Query 037424
Match_columns 231
No_of_seqs 224 out of 1180
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 12:05:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03140 ABC transporter G fam 100.0 1.3E-38 2.9E-43 336.1 13.5 197 20-219 8-213 (1470)
2 KOG0065 Pleiotropic drug resis 100.0 5.1E-29 1.1E-33 256.4 10.9 151 48-218 12-162 (1391)
3 TIGR00956 3a01205 Pleiotropic 99.7 9.5E-17 2.1E-21 170.3 10.6 106 112-219 2-109 (1394)
4 KOG0061 Transporter, ABC super 99.0 6.6E-10 1.4E-14 110.1 6.8 57 133-218 21-77 (613)
5 PF14510 ABC_trans_N: ABC-tran 98.9 2.2E-09 4.7E-14 80.6 5.7 53 112-166 33-85 (85)
6 PLN03211 ABC transporter G-25; 98.9 6.1E-09 1.3E-13 104.0 8.3 81 133-218 35-115 (659)
7 COG4559 ABC-type hemin transpo 98.8 6.8E-09 1.5E-13 91.4 5.2 35 184-218 14-48 (259)
8 PLN03140 ABC transporter G fam 98.8 9.9E-09 2.2E-13 110.2 7.3 67 132-219 862-928 (1470)
9 TIGR00955 3a01204 The Eye Pigm 98.8 5.2E-09 1.1E-13 103.4 4.5 39 181-219 35-73 (617)
10 COG1131 CcmA ABC-type multidru 98.6 2.1E-08 4.6E-13 90.9 4.0 36 183-218 17-52 (293)
11 cd03267 ABC_NatA_like Similar 98.6 3.3E-08 7.3E-13 86.0 4.5 37 183-219 33-69 (236)
12 TIGR00956 3a01205 Pleiotropic 98.6 6.3E-08 1.4E-12 103.7 6.6 37 183-219 775-811 (1394)
13 PRK14265 phosphate ABC transpo 98.6 7.2E-08 1.6E-12 86.0 5.8 35 185-219 34-68 (274)
14 cd03263 ABC_subfamily_A The AB 98.6 4.1E-08 8.9E-13 83.9 3.9 37 184-220 15-51 (220)
15 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.6 4.3E-08 9.4E-13 83.6 3.7 36 184-219 17-52 (218)
16 cd03213 ABCG_EPDR ABCG transpo 98.6 1.4E-07 2.9E-12 80.0 6.6 36 184-219 22-57 (194)
17 PRK10744 pstB phosphate transp 98.6 1E-07 2.2E-12 84.0 6.0 36 185-220 27-62 (260)
18 PRK13632 cbiO cobalt transport 98.6 1.1E-07 2.4E-12 84.5 6.2 37 184-220 22-58 (271)
19 PRK14273 phosphate ABC transpo 98.6 1.2E-07 2.7E-12 83.0 6.3 36 185-220 21-56 (254)
20 PRK14237 phosphate transporter 98.5 1.5E-07 3.1E-12 83.6 6.4 37 184-220 33-69 (267)
21 PRK14248 phosphate ABC transpo 98.5 1.9E-07 4.2E-12 82.6 7.1 36 185-220 35-70 (268)
22 PRK14259 phosphate ABC transpo 98.5 1.4E-07 2.9E-12 83.9 6.2 36 185-220 27-62 (269)
23 cd03225 ABC_cobalt_CbiO_domain 98.5 6.5E-08 1.4E-12 82.2 3.9 36 184-219 14-49 (211)
24 cd03301 ABC_MalK_N The N-termi 98.5 6.4E-08 1.4E-12 82.3 3.8 35 185-219 14-48 (213)
25 COG1136 SalX ABC-type antimicr 98.5 6.1E-08 1.3E-12 85.6 3.7 37 184-220 18-54 (226)
26 cd03226 ABC_cobalt_CbiO_domain 98.5 6.2E-08 1.4E-12 82.2 3.7 35 185-219 14-48 (205)
27 PRK14250 phosphate ABC transpo 98.5 1.4E-07 3.1E-12 82.2 5.8 35 185-219 17-51 (241)
28 TIGR02673 FtsE cell division A 98.5 6.9E-08 1.5E-12 82.2 3.7 37 184-220 15-51 (214)
29 COG1121 ZnuC ABC-type Mn/Zn tr 98.5 1.4E-07 3E-12 84.6 5.8 34 185-218 18-51 (254)
30 cd03257 ABC_NikE_OppD_transpor 98.5 6.6E-08 1.4E-12 82.8 3.6 35 185-219 19-53 (228)
31 cd03234 ABCG_White The White s 98.5 7.8E-08 1.7E-12 82.9 4.1 38 183-220 19-56 (226)
32 TIGR00960 3a0501s02 Type II (G 98.5 6.8E-08 1.5E-12 82.4 3.6 36 185-220 17-52 (216)
33 cd03292 ABC_FtsE_transporter F 98.5 7.3E-08 1.6E-12 81.9 3.8 37 184-220 14-50 (214)
34 TIGR01978 sufC FeS assembly AT 98.5 7E-08 1.5E-12 83.5 3.6 37 184-220 13-49 (243)
35 cd03247 ABCC_cytochrome_bd The 98.5 7.7E-08 1.7E-12 80.1 3.7 36 185-220 16-51 (178)
36 cd03261 ABC_Org_Solvent_Resist 98.5 7.4E-08 1.6E-12 83.4 3.7 35 185-219 14-48 (235)
37 cd03233 ABC_PDR_domain1 The pl 98.5 7.9E-08 1.7E-12 81.9 3.8 38 183-220 19-56 (202)
38 TIGR02211 LolD_lipo_ex lipopro 98.5 7.8E-08 1.7E-12 82.2 3.7 36 184-219 18-53 (221)
39 cd03265 ABC_DrrA DrrA is the A 98.5 7.8E-08 1.7E-12 82.4 3.7 35 185-219 14-48 (220)
40 cd03232 ABC_PDR_domain2 The pl 98.5 9.1E-08 2E-12 80.8 4.1 36 184-219 20-55 (192)
41 COG1120 FepC ABC-type cobalami 98.5 7.8E-08 1.7E-12 86.4 3.8 36 184-219 15-50 (258)
42 cd03293 ABC_NrtD_SsuB_transpor 98.5 8.6E-08 1.9E-12 82.2 3.9 36 184-219 17-52 (220)
43 PRK14255 phosphate ABC transpo 98.5 1.7E-07 3.8E-12 81.9 5.9 36 184-219 18-53 (252)
44 cd03262 ABC_HisP_GlnQ_permease 98.5 8.2E-08 1.8E-12 81.5 3.8 36 184-219 13-48 (213)
45 cd03259 ABC_Carb_Solutes_like 98.5 8.9E-08 1.9E-12 81.5 3.8 36 184-219 13-48 (213)
46 cd03260 ABC_PstB_phosphate_tra 98.5 8.7E-08 1.9E-12 82.4 3.7 37 185-221 14-50 (227)
47 KOG0065 Pleiotropic drug resis 98.5 5.7E-08 1.2E-12 102.2 3.0 37 182-218 802-838 (1391)
48 cd03224 ABC_TM1139_LivF_branch 98.5 9E-08 1.9E-12 81.8 3.8 35 185-219 14-48 (222)
49 cd03250 ABCC_MRP_domain1 Domai 98.5 8.9E-08 1.9E-12 81.2 3.7 36 185-220 19-54 (204)
50 cd03269 ABC_putative_ATPase Th 98.5 9.1E-08 2E-12 81.3 3.7 35 185-219 14-48 (210)
51 PRK14261 phosphate ABC transpo 98.5 9E-08 2E-12 83.8 3.7 36 184-219 19-54 (253)
52 PRK11629 lolD lipoprotein tran 98.5 9.4E-08 2E-12 82.7 3.7 36 184-219 22-57 (233)
53 TIGR03873 F420-0_ABC_ATP propo 98.5 1.5E-07 3.3E-12 82.6 5.1 36 184-219 14-49 (256)
54 TIGR03410 urea_trans_UrtE urea 98.5 9.2E-08 2E-12 82.4 3.6 35 185-219 14-48 (230)
55 TIGR02324 CP_lyasePhnL phospho 98.5 9.7E-08 2.1E-12 81.9 3.7 37 184-220 21-57 (224)
56 cd03218 ABC_YhbG The ABC trans 98.5 9.9E-08 2.1E-12 82.2 3.7 35 185-219 14-48 (232)
57 PRK14242 phosphate transporter 98.5 1.1E-07 2.3E-12 83.3 3.9 36 185-220 20-55 (253)
58 PRK14235 phosphate transporter 98.5 9.6E-08 2.1E-12 84.7 3.7 36 185-220 33-68 (267)
59 PRK10908 cell division protein 98.5 1E-07 2.2E-12 81.8 3.7 36 184-219 15-50 (222)
60 TIGR02315 ABC_phnC phosphonate 98.5 1E-07 2.2E-12 82.6 3.7 36 184-219 15-50 (243)
61 cd03296 ABC_CysA_sulfate_impor 98.5 1E-07 2.2E-12 82.8 3.7 37 184-220 15-51 (239)
62 cd03228 ABCC_MRP_Like The MRP 98.5 1.2E-07 2.6E-12 78.6 3.8 36 185-220 16-51 (171)
63 cd03258 ABC_MetN_methionine_tr 98.5 1.1E-07 2.4E-12 82.1 3.8 36 185-220 19-54 (233)
64 cd03216 ABC_Carb_Monos_I This 98.5 1.2E-07 2.6E-12 78.3 3.8 35 185-219 14-48 (163)
65 cd03219 ABC_Mj1267_LivG_branch 98.5 1.1E-07 2.3E-12 82.2 3.6 35 185-219 14-48 (236)
66 PRK13546 teichoic acids export 98.5 3.9E-07 8.4E-12 81.3 7.3 39 182-220 35-73 (264)
67 cd03256 ABC_PhnC_transporter A 98.5 1.1E-07 2.4E-12 82.1 3.7 36 184-219 14-49 (241)
68 PRK11701 phnK phosphonate C-P 98.5 1.2E-07 2.5E-12 83.4 3.8 37 184-220 19-55 (258)
69 PRK11248 tauB taurine transpor 98.5 1.1E-07 2.4E-12 84.0 3.6 36 184-219 14-49 (255)
70 PRK11264 putative amino-acid A 98.5 1.2E-07 2.6E-12 82.6 3.8 35 185-219 17-51 (250)
71 cd03268 ABC_BcrA_bacitracin_re 98.5 1.2E-07 2.7E-12 80.4 3.8 36 184-219 13-48 (208)
72 PRK13538 cytochrome c biogenes 98.5 1.2E-07 2.7E-12 80.5 3.8 35 185-219 15-49 (204)
73 COG1126 GlnQ ABC-type polar am 98.5 9.6E-08 2.1E-12 84.2 3.1 38 183-220 14-51 (240)
74 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.5 1.2E-07 2.6E-12 82.0 3.7 37 184-220 16-52 (238)
75 TIGR03411 urea_trans_UrtD urea 98.5 1.2E-07 2.6E-12 82.2 3.7 35 185-219 16-50 (242)
76 cd03215 ABC_Carb_Monos_II This 98.5 1.3E-07 2.8E-12 79.2 3.7 34 186-219 15-48 (182)
77 PRK10247 putative ABC transpor 98.5 1.3E-07 2.8E-12 81.7 3.8 37 184-220 20-56 (225)
78 PRK13540 cytochrome c biogenes 98.5 1.3E-07 2.8E-12 80.2 3.7 37 184-220 14-50 (200)
79 cd03295 ABC_OpuCA_Osmoprotecti 98.5 1.3E-07 2.7E-12 82.4 3.7 37 184-220 14-50 (242)
80 cd03291 ABCC_CFTR1 The CFTR su 98.5 2.9E-07 6.4E-12 83.1 6.2 35 185-219 51-85 (282)
81 PRK14267 phosphate ABC transpo 98.5 1.3E-07 2.7E-12 82.8 3.7 36 185-220 18-53 (253)
82 cd03244 ABCC_MRP_domain2 Domai 98.5 1.4E-07 3E-12 80.7 3.8 37 184-220 17-53 (221)
83 cd03230 ABC_DR_subfamily_A Thi 98.5 1.4E-07 3.1E-12 78.3 3.8 35 185-219 14-48 (173)
84 TIGR03005 ectoine_ehuA ectoine 98.4 1.3E-07 2.8E-12 82.8 3.6 35 185-219 14-48 (252)
85 PRK14241 phosphate transporter 98.4 1.4E-07 2.9E-12 83.0 3.8 36 185-220 18-53 (258)
86 cd03254 ABCC_Glucan_exporter_l 98.4 1.4E-07 3E-12 81.1 3.8 36 185-220 17-52 (229)
87 PRK11614 livF leucine/isoleuci 98.4 1.3E-07 2.8E-12 81.9 3.6 36 184-219 18-53 (237)
88 PRK14256 phosphate ABC transpo 98.4 1.4E-07 3E-12 82.6 3.8 37 184-220 17-53 (252)
89 TIGR03864 PQQ_ABC_ATP ABC tran 98.4 1.4E-07 3E-12 81.8 3.7 36 184-219 14-49 (236)
90 PRK14245 phosphate ABC transpo 98.4 1.4E-07 3.1E-12 82.4 3.8 36 184-219 16-51 (250)
91 PRK14275 phosphate ABC transpo 98.4 1E-07 2.2E-12 85.7 2.9 37 184-220 52-88 (286)
92 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.4 1.4E-07 3E-12 81.6 3.7 37 183-219 34-70 (224)
93 PRK14240 phosphate transporter 98.4 1.4E-07 3.1E-12 82.3 3.7 35 185-219 17-51 (250)
94 PRK13649 cbiO cobalt transport 98.4 1.4E-07 3E-12 84.0 3.7 36 184-219 20-55 (280)
95 PRK10584 putative ABC transpor 98.4 1.5E-07 3.3E-12 80.9 3.8 36 185-220 24-59 (228)
96 TIGR02769 nickel_nikE nickel i 98.4 1.5E-07 3.3E-12 83.3 3.8 37 184-220 24-60 (265)
97 PRK14274 phosphate ABC transpo 98.4 1.5E-07 3.3E-12 82.8 3.7 36 185-220 26-61 (259)
98 PRK09493 glnQ glutamine ABC tr 98.4 1.6E-07 3.4E-12 81.6 3.7 36 184-219 14-49 (240)
99 cd03223 ABCD_peroxisomal_ALDP 98.4 1.7E-07 3.7E-12 77.7 3.7 36 184-219 14-49 (166)
100 COG3638 ABC-type phosphate/pho 98.4 1.5E-07 3.2E-12 83.8 3.6 37 183-219 16-52 (258)
101 PRK13539 cytochrome c biogenes 98.4 1.7E-07 3.6E-12 80.0 3.8 36 184-219 15-50 (207)
102 cd03290 ABCC_SUR1_N The SUR do 98.4 1.6E-07 3.5E-12 80.3 3.7 36 184-219 14-49 (218)
103 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.4 1.6E-07 3.4E-12 76.3 3.4 35 185-219 14-48 (144)
104 TIGR01189 ccmA heme ABC export 98.4 1.7E-07 3.7E-12 79.2 3.7 36 184-219 13-48 (198)
105 cd03253 ABCC_ATM1_transporter 98.4 1.7E-07 3.6E-12 81.0 3.7 36 185-220 15-50 (236)
106 cd03229 ABC_Class3 This class 98.4 1.8E-07 3.9E-12 78.0 3.7 34 185-218 14-47 (178)
107 PRK10895 lipopolysaccharide AB 98.4 1.7E-07 3.6E-12 81.4 3.6 37 184-220 16-52 (241)
108 PRK09580 sufC cysteine desulfu 98.4 1.6E-07 3.4E-12 81.7 3.4 36 185-220 15-50 (248)
109 PRK11300 livG leucine/isoleuci 98.4 1.7E-07 3.7E-12 81.9 3.7 37 184-220 18-54 (255)
110 cd03266 ABC_NatA_sodium_export 98.4 1.8E-07 3.9E-12 79.8 3.8 36 185-220 19-54 (218)
111 TIGR02323 CP_lyasePhnK phospho 98.4 1.8E-07 4E-12 81.8 3.8 36 185-220 17-52 (253)
112 PRK11124 artP arginine transpo 98.4 1.8E-07 3.8E-12 81.3 3.7 35 185-219 16-50 (242)
113 PRK14247 phosphate ABC transpo 98.4 1.7E-07 3.8E-12 81.8 3.6 36 185-220 17-52 (250)
114 PRK14253 phosphate ABC transpo 98.4 1.9E-07 4.1E-12 81.5 3.8 37 184-220 16-52 (249)
115 COG0410 LivF ABC-type branched 98.4 1.8E-07 3.8E-12 82.8 3.6 36 184-219 16-51 (237)
116 PRK14270 phosphate ABC transpo 98.4 1.9E-07 4.1E-12 81.7 3.8 37 184-220 17-53 (251)
117 PRK13645 cbiO cobalt transport 98.4 1.9E-07 4E-12 83.8 3.8 36 184-219 24-59 (289)
118 PRK13648 cbiO cobalt transport 98.4 1.8E-07 4E-12 82.9 3.7 36 185-220 23-58 (269)
119 PRK14262 phosphate ABC transpo 98.4 1.8E-07 3.9E-12 81.6 3.6 36 184-219 16-51 (250)
120 PRK15056 manganese/iron transp 98.4 1.8E-07 3.8E-12 83.2 3.6 35 185-219 21-55 (272)
121 cd03289 ABCC_CFTR2 The CFTR su 98.4 4.3E-07 9.4E-12 81.7 6.1 36 185-220 18-53 (275)
122 cd03217 ABC_FeS_Assembly ABC-t 98.4 1.8E-07 3.9E-12 79.5 3.5 36 185-220 14-49 (200)
123 cd03246 ABCC_Protease_Secretio 98.4 2.1E-07 4.6E-12 77.3 3.7 37 184-220 15-51 (173)
124 PRK14239 phosphate transporter 98.4 2E-07 4.3E-12 81.4 3.7 35 185-219 19-53 (252)
125 COG2884 FtsE Predicted ATPase 98.4 2E-07 4.4E-12 80.9 3.6 37 184-220 15-51 (223)
126 PRK14244 phosphate ABC transpo 98.4 2E-07 4.4E-12 81.5 3.8 37 184-220 18-54 (251)
127 TIGR02982 heterocyst_DevA ABC 98.4 2.1E-07 4.5E-12 79.9 3.8 36 184-219 18-53 (220)
128 PRK13646 cbiO cobalt transport 98.4 2E-07 4.3E-12 83.7 3.8 36 184-219 20-55 (286)
129 PRK11831 putative ABC transpor 98.4 1.9E-07 4.2E-12 82.9 3.6 36 184-219 20-55 (269)
130 PRK14260 phosphate ABC transpo 98.4 2.1E-07 4.6E-12 82.0 3.9 36 185-220 21-56 (259)
131 cd03251 ABCC_MsbA MsbA is an e 98.4 2.1E-07 4.5E-12 80.3 3.7 37 184-220 15-51 (234)
132 PRK14268 phosphate ABC transpo 98.4 2E-07 4.4E-12 82.0 3.7 35 185-219 26-60 (258)
133 TIGR03740 galliderm_ABC gallid 98.4 2.2E-07 4.7E-12 79.8 3.8 36 184-219 13-48 (223)
134 cd03245 ABCC_bacteriocin_expor 98.4 2.3E-07 4.9E-12 79.3 3.8 37 184-220 17-53 (220)
135 PRK14269 phosphate ABC transpo 98.4 2.1E-07 4.7E-12 81.2 3.8 37 184-220 15-51 (246)
136 PRK11247 ssuB aliphatic sulfon 98.4 2.1E-07 4.5E-12 82.7 3.7 35 185-219 26-60 (257)
137 PRK10575 iron-hydroxamate tran 98.4 1.8E-07 4E-12 82.7 3.4 35 185-219 25-59 (265)
138 PRK14272 phosphate ABC transpo 98.4 2.3E-07 4.9E-12 81.0 3.8 37 184-220 17-53 (252)
139 PRK13547 hmuV hemin importer A 98.4 2.1E-07 4.5E-12 83.3 3.6 35 185-219 15-49 (272)
140 cd03294 ABC_Pro_Gly_Bertaine T 98.4 2.3E-07 4.9E-12 82.5 3.7 38 183-220 36-73 (269)
141 PRK13650 cbiO cobalt transport 98.4 2.3E-07 5E-12 83.0 3.8 35 185-219 21-55 (279)
142 cd03248 ABCC_TAP TAP, the Tran 98.4 2.4E-07 5.3E-12 79.6 3.8 36 185-220 28-63 (226)
143 CHL00131 ycf16 sulfate ABC tra 98.4 2.1E-07 4.6E-12 81.2 3.5 36 185-220 21-56 (252)
144 PRK13641 cbiO cobalt transport 98.4 2.4E-07 5.2E-12 83.2 3.9 36 184-219 20-55 (287)
145 cd03252 ABCC_Hemolysin The ABC 98.4 2.5E-07 5.3E-12 80.1 3.8 36 184-219 15-50 (237)
146 TIGR01288 nodI ATP-binding ABC 98.4 2.4E-07 5.2E-12 83.8 3.8 36 184-219 17-52 (303)
147 PRK14251 phosphate ABC transpo 98.4 2.5E-07 5.3E-12 80.8 3.7 37 184-220 17-53 (251)
148 PRK15112 antimicrobial peptide 98.4 2.5E-07 5.5E-12 82.0 3.8 37 184-220 26-62 (267)
149 cd03288 ABCC_SUR2 The SUR doma 98.4 2.4E-07 5.3E-12 81.6 3.7 37 184-220 34-70 (257)
150 PRK13638 cbiO cobalt transport 98.4 2.4E-07 5.2E-12 82.3 3.7 36 184-219 14-49 (271)
151 PRK10418 nikD nickel transport 98.4 2.6E-07 5.6E-12 81.2 3.8 36 185-220 17-52 (254)
152 cd03369 ABCC_NFT1 Domain 2 of 98.4 2.8E-07 6.1E-12 78.3 3.8 36 185-220 22-57 (207)
153 PRK13548 hmuV hemin importer A 98.4 2.6E-07 5.6E-12 81.6 3.7 36 184-219 15-50 (258)
154 PRK11231 fecE iron-dicitrate t 98.4 2.6E-07 5.6E-12 81.1 3.6 37 184-220 15-51 (255)
155 TIGR00972 3a0107s01c2 phosphat 98.4 2.7E-07 5.8E-12 80.6 3.7 35 185-219 15-49 (247)
156 PRK09544 znuC high-affinity zi 98.4 2.6E-07 5.7E-12 81.6 3.7 35 185-219 18-52 (251)
157 PRK14266 phosphate ABC transpo 98.4 2.7E-07 5.9E-12 80.5 3.7 36 185-220 17-52 (250)
158 PRK14271 phosphate ABC transpo 98.4 2.8E-07 6E-12 82.4 3.8 36 184-219 34-69 (276)
159 PRK13644 cbiO cobalt transport 98.4 2.9E-07 6.2E-12 82.2 3.9 35 185-219 16-50 (274)
160 COG4619 ABC-type uncharacteriz 98.4 2.7E-07 5.9E-12 79.1 3.5 39 183-221 15-53 (223)
161 PRK13634 cbiO cobalt transport 98.4 2.8E-07 6E-12 83.0 3.7 36 184-219 20-55 (290)
162 PRK13543 cytochrome c biogenes 98.4 2.9E-07 6.4E-12 78.9 3.7 35 185-219 25-59 (214)
163 PRK13639 cbiO cobalt transport 98.4 2.8E-07 6.1E-12 82.1 3.7 35 185-219 16-50 (275)
164 PRK09984 phosphonate/organopho 98.4 2.9E-07 6.2E-12 81.1 3.7 37 184-220 17-53 (262)
165 COG1134 TagH ABC-type polysacc 98.4 8.9E-07 1.9E-11 79.0 6.7 39 180-218 36-74 (249)
166 PRK11022 dppD dipeptide transp 98.4 5.4E-07 1.2E-11 82.8 5.5 37 184-220 20-56 (326)
167 PRK14263 phosphate ABC transpo 98.4 3.1E-07 6.8E-12 81.4 3.8 37 184-220 21-57 (261)
168 COG3842 PotA ABC-type spermidi 98.4 2.9E-07 6.2E-12 86.1 3.7 36 183-218 17-52 (352)
169 PRK14236 phosphate transporter 98.4 3.1E-07 6.6E-12 81.7 3.7 36 185-220 39-74 (272)
170 PRK15093 antimicrobial peptide 98.4 6.9E-07 1.5E-11 82.1 6.1 37 184-220 20-56 (330)
171 PRK13637 cbiO cobalt transport 98.4 3E-07 6.6E-12 82.6 3.7 36 184-219 20-55 (287)
172 TIGR00968 3a0106s01 sulfate AB 98.4 3.3E-07 7.1E-12 79.8 3.7 35 185-219 14-48 (237)
173 cd03300 ABC_PotA_N PotA is an 98.3 3.4E-07 7.3E-12 79.3 3.8 35 185-219 14-48 (232)
174 PRK14249 phosphate ABC transpo 98.3 3.3E-07 7.3E-12 80.1 3.8 36 185-220 18-53 (251)
175 cd03231 ABC_CcmA_heme_exporter 98.3 3.6E-07 7.8E-12 77.6 3.9 35 185-219 14-48 (201)
176 PRK13537 nodulation ABC transp 98.3 8.2E-07 1.8E-11 80.7 6.4 36 184-219 20-55 (306)
177 PRK10419 nikE nickel transport 98.3 3.6E-07 7.9E-12 81.2 4.0 37 184-220 25-61 (268)
178 PRK10253 iron-enterobactin tra 98.3 2.8E-07 6.1E-12 81.5 3.3 36 184-219 20-55 (265)
179 PRK14246 phosphate ABC transpo 98.3 3.5E-07 7.6E-12 80.9 3.7 35 184-218 23-57 (257)
180 PRK13635 cbiO cobalt transport 98.3 3.5E-07 7.5E-12 81.9 3.7 36 184-219 20-55 (279)
181 PRK14238 phosphate transporter 98.3 3.7E-07 8.1E-12 81.2 3.8 37 184-220 37-73 (271)
182 PRK14243 phosphate transporter 98.3 3.8E-07 8.2E-12 80.8 3.7 36 185-220 24-59 (264)
183 COG0396 sufC Cysteine desulfur 98.3 7.6E-07 1.6E-11 79.1 5.6 35 184-218 17-51 (251)
184 PRK13647 cbiO cobalt transport 98.3 3.7E-07 8E-12 81.4 3.6 35 185-219 19-53 (274)
185 TIGR03522 GldA_ABC_ATP gliding 98.3 4.1E-07 9E-12 82.3 4.0 36 184-219 15-50 (301)
186 PRK14252 phosphate ABC transpo 98.3 4.1E-07 8.8E-12 80.4 3.8 35 185-219 30-64 (265)
187 PRK13633 cobalt transporter AT 98.3 4.1E-07 8.9E-12 81.3 3.8 36 184-219 23-58 (280)
188 COG1117 PstB ABC-type phosphat 98.3 3.7E-07 8E-12 80.6 3.1 35 184-218 20-54 (253)
189 cd00267 ABC_ATPase ABC (ATP-bi 98.3 5E-07 1.1E-11 73.5 3.7 35 185-219 13-47 (157)
190 PRK11153 metN DL-methionine tr 98.3 4.4E-07 9.5E-12 83.9 3.7 37 184-220 18-54 (343)
191 PRK14254 phosphate ABC transpo 98.3 4.5E-07 9.8E-12 81.5 3.7 37 184-220 52-88 (285)
192 PRK09473 oppD oligopeptide tra 98.3 9.1E-07 2E-11 81.5 5.7 37 184-220 29-65 (330)
193 COG1116 TauB ABC-type nitrate/ 98.3 4.9E-07 1.1E-11 80.7 3.7 36 184-219 16-51 (248)
194 cd03236 ABC_RNaseL_inhibitor_d 98.3 3.3E-07 7.2E-12 81.4 2.6 35 185-220 15-49 (255)
195 PRK13643 cbiO cobalt transport 98.3 4.9E-07 1.1E-11 81.3 3.7 35 185-219 20-54 (288)
196 PRK14258 phosphate ABC transpo 98.3 5.3E-07 1.1E-11 79.6 3.8 36 185-220 21-56 (261)
197 PRK13636 cbiO cobalt transport 98.3 5.3E-07 1.1E-11 80.8 3.7 36 185-220 20-55 (283)
198 PRK10619 histidine/lysine/argi 98.3 5.4E-07 1.2E-11 79.2 3.7 37 184-220 18-54 (257)
199 PRK13652 cbiO cobalt transport 98.3 5.8E-07 1.3E-11 80.2 3.7 35 185-219 18-52 (277)
200 PRK11650 ugpC glycerol-3-phosp 98.3 5.7E-07 1.2E-11 83.7 3.7 36 184-219 17-52 (356)
201 PRK14264 phosphate ABC transpo 98.3 6.1E-07 1.3E-11 81.4 3.8 36 185-220 59-94 (305)
202 TIGR03265 PhnT2 putative 2-ami 98.3 6E-07 1.3E-11 83.5 3.7 36 184-219 17-52 (353)
203 PRK13651 cobalt transporter AT 98.3 6.6E-07 1.4E-11 81.5 3.8 37 184-220 20-56 (305)
204 cd00820 PEPCK_HprK Phosphoenol 98.3 7.9E-07 1.7E-11 70.1 3.8 34 185-218 3-36 (107)
205 PRK13631 cbiO cobalt transport 98.3 6.5E-07 1.4E-11 82.1 3.8 36 184-219 39-74 (320)
206 PRK13640 cbiO cobalt transport 98.2 7.4E-07 1.6E-11 79.8 3.7 36 185-220 21-56 (282)
207 PRK13642 cbiO cobalt transport 98.2 7.4E-07 1.6E-11 79.5 3.7 37 184-220 20-56 (277)
208 PRK13541 cytochrome c biogenes 98.2 8.2E-07 1.8E-11 75.0 3.6 34 186-220 16-49 (195)
209 PRK11000 maltose/maltodextrin 98.2 7.8E-07 1.7E-11 83.1 3.7 36 184-219 16-51 (369)
210 PRK09452 potA putrescine/sperm 98.2 7.9E-07 1.7E-11 83.5 3.8 36 184-219 27-62 (375)
211 PRK09536 btuD corrinoid ABC tr 98.2 7.1E-07 1.5E-11 84.6 3.5 36 184-219 16-51 (402)
212 TIGR02314 ABC_MetN D-methionin 98.2 8.6E-07 1.9E-11 82.3 3.7 37 184-220 18-54 (343)
213 TIGR03258 PhnT 2-aminoethylpho 98.2 9.1E-07 2E-11 82.7 3.7 36 184-219 18-53 (362)
214 PRK11432 fbpC ferric transport 98.2 9.3E-07 2E-11 82.2 3.7 36 184-219 19-54 (351)
215 PRK14257 phosphate ABC transpo 98.2 9.9E-07 2.1E-11 81.3 3.7 36 185-220 96-131 (329)
216 PRK10851 sulfate/thiosulfate t 98.2 1E-06 2.2E-11 82.0 3.7 36 184-219 15-50 (353)
217 PRK09700 D-allose transporter 98.2 9.7E-07 2.1E-11 85.0 3.5 37 184-220 18-54 (510)
218 PRK10938 putative molybdenum t 98.2 1E-06 2.2E-11 84.3 3.7 36 185-220 17-52 (490)
219 PRK13549 xylose transporter AT 98.2 1.2E-06 2.7E-11 84.3 4.1 36 184-219 18-53 (506)
220 PRK13536 nodulation factor exp 98.2 1.2E-06 2.6E-11 81.1 3.8 36 184-219 54-89 (340)
221 PRK11607 potG putrescine trans 98.2 1.3E-06 2.8E-11 82.1 3.7 37 184-220 32-68 (377)
222 COG1122 CbiO ABC-type cobalt t 98.2 1.4E-06 3E-11 77.2 3.5 37 184-220 17-53 (235)
223 PRK15439 autoinducer 2 ABC tra 98.2 1.4E-06 3E-11 84.2 3.8 36 184-219 24-59 (510)
224 PRK10762 D-ribose transporter 98.2 1.4E-06 3.1E-11 83.7 3.8 37 184-220 17-53 (501)
225 PRK10636 putative ABC transpor 98.2 2.7E-06 5.8E-11 84.7 5.8 36 184-219 14-49 (638)
226 TIGR03269 met_CoM_red_A2 methy 98.2 1.4E-06 3E-11 84.1 3.7 37 184-220 297-333 (520)
227 PRK15079 oligopeptide ABC tran 98.2 1.6E-06 3.4E-11 80.0 3.9 36 184-219 34-69 (331)
228 PRK11176 lipid transporter ATP 98.2 5.2E-06 1.1E-10 80.9 7.6 36 184-219 356-391 (582)
229 PRK11308 dppF dipeptide transp 98.2 1.6E-06 3.5E-11 79.8 3.8 36 184-219 28-63 (327)
230 PRK11160 cysteine/glutathione 98.1 2.7E-06 5.8E-11 83.3 5.6 34 185-218 354-387 (574)
231 PRK11819 putative ABC transpor 98.1 1.5E-06 3.3E-11 84.8 3.8 37 184-220 20-56 (556)
232 TIGR02633 xylG D-xylose ABC tr 98.1 1.6E-06 3.5E-11 83.2 3.8 36 184-219 14-49 (500)
233 PRK15134 microcin C ABC transp 98.1 1.7E-06 3.6E-11 83.8 3.9 37 184-220 299-335 (529)
234 TIGR02857 CydD thiol reductant 98.1 3E-06 6.6E-11 81.6 5.6 34 185-218 336-369 (529)
235 PRK11288 araG L-arabinose tran 98.1 1.6E-06 3.5E-11 83.4 3.7 36 185-220 18-53 (501)
236 TIGR03719 ABC_ABC_ChvD ATP-bin 98.1 1.7E-06 3.7E-11 84.3 3.8 36 184-219 18-53 (552)
237 PRK15064 ABC transporter ATP-b 98.1 1.8E-06 3.9E-11 83.6 3.8 35 185-219 15-49 (530)
238 KOG0057 Mitochondrial Fe/S clu 98.1 5E-06 1.1E-10 81.4 6.8 36 184-219 365-400 (591)
239 PRK10938 putative molybdenum t 98.1 1.7E-06 3.6E-11 82.9 3.5 36 184-219 273-308 (490)
240 COG3839 MalK ABC-type sugar tr 98.1 1.9E-06 4.2E-11 80.1 3.8 34 186-219 18-51 (338)
241 TIGR02633 xylG D-xylose ABC tr 98.1 1.9E-06 4.1E-11 82.7 3.8 35 184-218 273-307 (500)
242 TIGR03415 ABC_choXWV_ATP choli 98.1 1.8E-06 3.9E-11 81.4 3.5 38 182-219 35-72 (382)
243 COG1118 CysA ABC-type sulfate/ 98.1 2E-06 4.3E-11 79.3 3.7 37 183-219 14-50 (345)
244 PRK15134 microcin C ABC transp 98.1 2E-06 4.2E-11 83.3 3.8 37 184-220 22-58 (529)
245 COG4181 Predicted ABC-type tra 98.1 2.5E-06 5.5E-11 73.5 4.0 40 179-218 18-57 (228)
246 TIGR03797 NHPM_micro_ABC2 NHPM 98.1 3.8E-06 8.3E-11 83.7 5.8 35 184-218 466-500 (686)
247 COG1127 Ttg2A ABC-type transpo 98.1 2.1E-06 4.5E-11 76.8 3.6 37 183-219 20-56 (263)
248 cd03222 ABC_RNaseL_inhibitor T 98.1 2E-06 4.3E-11 72.9 3.1 35 184-219 13-47 (177)
249 TIGR03269 met_CoM_red_A2 methy 98.1 2.4E-06 5.1E-11 82.5 3.8 37 184-220 13-49 (520)
250 PRK13549 xylose transporter AT 98.1 2.4E-06 5.2E-11 82.3 3.8 36 184-219 275-310 (506)
251 PRK15064 ABC transporter ATP-b 98.1 2.5E-06 5.4E-11 82.6 3.8 36 184-219 332-367 (530)
252 TIGR02868 CydC thiol reductant 98.1 2.5E-06 5.4E-11 82.2 3.7 34 185-218 349-382 (529)
253 COG1132 MdlB ABC-type multidru 98.1 5.3E-06 1.1E-10 80.8 6.0 35 184-218 342-376 (567)
254 PRK11147 ABC transporter ATPas 98.1 2.4E-06 5.1E-11 84.8 3.6 36 184-219 16-51 (635)
255 COG4525 TauB ABC-type taurine 98.1 2.6E-06 5.6E-11 74.8 3.3 36 184-219 18-53 (259)
256 PRK10636 putative ABC transpor 98.1 2.6E-06 5.7E-11 84.8 3.7 36 184-219 325-360 (638)
257 PRK09700 D-allose transporter 98.1 2.8E-06 6.1E-11 81.8 3.7 35 185-219 277-311 (510)
258 TIGR03719 ABC_ABC_ChvD ATP-bin 98.1 2.7E-06 5.8E-11 83.0 3.5 36 184-219 335-370 (552)
259 TIGR01194 cyc_pep_trnsptr cycl 98.0 7.3E-06 1.6E-10 80.0 6.4 35 184-218 355-389 (555)
260 PRK10070 glycine betaine trans 98.0 2.8E-06 6.1E-11 80.5 3.3 36 184-219 41-76 (400)
261 PRK11819 putative ABC transpor 98.0 3.2E-06 6.9E-11 82.6 3.7 36 184-219 337-372 (556)
262 COG1125 OpuBA ABC-type proline 98.0 3.9E-06 8.5E-11 75.9 3.8 36 183-218 13-48 (309)
263 COG1124 DppF ABC-type dipeptid 98.0 4.6E-06 9.9E-11 74.5 4.0 38 183-220 19-56 (252)
264 PRK10762 D-ribose transporter 98.0 3.7E-06 8.1E-11 80.9 3.7 35 185-219 266-300 (501)
265 PRK11147 ABC transporter ATPas 98.0 3.7E-06 8.1E-11 83.4 3.7 36 184-219 332-367 (635)
266 TIGR03375 type_I_sec_LssB type 98.0 8E-06 1.7E-10 81.5 6.0 34 185-218 479-512 (694)
267 PRK13545 tagH teichoic acids e 98.0 4E-06 8.7E-11 82.3 3.7 37 184-220 37-73 (549)
268 PRK11288 araG L-arabinose tran 98.0 4.1E-06 8.9E-11 80.6 3.6 34 185-218 267-300 (501)
269 PRK11174 cysteine/glutathione 98.0 4.1E-06 9E-11 81.7 3.7 34 185-218 364-397 (588)
270 TIGR02204 MsbA_rel ABC transpo 98.0 4.5E-06 9.7E-11 81.1 3.9 35 184-218 353-387 (576)
271 PRK10261 glutathione transport 98.0 4.1E-06 8.8E-11 83.1 3.5 37 184-220 29-65 (623)
272 PRK10261 glutathione transport 98.0 4.5E-06 9.8E-11 82.8 3.8 36 184-219 337-372 (623)
273 COG2274 SunT ABC-type bacterio 98.0 8.5E-06 1.8E-10 82.4 5.8 34 185-218 487-520 (709)
274 COG4555 NatA ABC-type Na+ tran 98.0 5.4E-06 1.2E-10 72.9 3.7 39 183-221 14-52 (245)
275 PRK10982 galactose/methyl gala 98.0 4.8E-06 1E-10 79.8 3.6 34 185-218 262-295 (491)
276 PRK10522 multidrug transporter 98.0 5.1E-06 1.1E-10 80.8 3.7 34 185-218 337-370 (547)
277 PLN03073 ABC transporter F fam 98.0 8.4E-06 1.8E-10 82.5 5.3 35 184-218 190-224 (718)
278 TIGR00958 3a01208 Conjugate Tr 98.0 5.8E-06 1.3E-10 83.0 3.9 35 184-218 494-528 (711)
279 TIGR01193 bacteriocin_ABC ABC- 97.9 6.1E-06 1.3E-10 82.5 3.8 34 185-218 488-521 (708)
280 TIGR03796 NHPM_micro_ABC1 NHPM 97.9 6.2E-06 1.3E-10 82.4 3.7 35 184-218 492-526 (710)
281 PRK15439 autoinducer 2 ABC tra 97.9 6.3E-06 1.4E-10 79.6 3.6 35 185-219 277-311 (510)
282 COG0411 LivG ABC-type branched 97.9 2.9E-06 6.3E-11 75.7 1.1 36 183-218 16-51 (250)
283 PRK10789 putative multidrug tr 97.9 6.7E-06 1.5E-10 80.4 3.7 35 184-218 328-362 (569)
284 TIGR01842 type_I_sec_PrtD type 97.9 7.2E-06 1.6E-10 79.6 3.8 35 184-218 331-365 (544)
285 PRK13657 cyclic beta-1,2-gluca 97.9 6.9E-06 1.5E-10 80.3 3.7 34 185-218 349-382 (588)
286 COG4618 ArpD ABC-type protease 97.9 1.8E-05 3.9E-10 77.1 6.3 36 183-218 348-383 (580)
287 TIGR02203 MsbA_lipidA lipid A 97.9 7.5E-06 1.6E-10 79.3 3.8 34 185-218 346-379 (571)
288 PRK10790 putative multidrug tr 97.9 7.7E-06 1.7E-10 80.0 3.7 34 185-218 355-388 (592)
289 KOG0056 Heavy metal exporter H 97.9 3.2E-05 6.8E-10 75.6 7.7 37 184-220 551-587 (790)
290 TIGR01271 CFTR_protein cystic 97.9 1.6E-05 3.4E-10 86.1 6.1 37 184-220 1232-1268(1490)
291 PLN03073 ABC transporter F fam 97.9 8.1E-06 1.7E-10 82.6 3.6 35 185-219 523-557 (718)
292 TIGR00954 3a01203 Peroxysomal 97.9 1.1E-05 2.4E-10 80.6 3.7 35 185-219 466-500 (659)
293 KOG0058 Peptide exporter, ABC 97.8 1.7E-05 3.7E-10 79.6 4.9 36 182-217 479-514 (716)
294 TIGR00957 MRP_assoc_pro multi 97.8 2.3E-05 4.9E-10 85.0 6.2 35 185-219 1300-1334(1522)
295 PTZ00243 ABC transporter; Prov 97.8 2.3E-05 5E-10 85.2 6.0 35 185-219 1324-1358(1560)
296 PRK10535 macrolide transporter 97.8 1.3E-05 2.8E-10 80.0 3.8 37 184-220 21-57 (648)
297 PLN03232 ABC transporter C fam 97.8 2.4E-05 5.2E-10 84.7 6.0 34 185-218 1250-1283(1495)
298 PRK13409 putative ATPase RIL; 97.8 9.6E-06 2.1E-10 80.3 2.6 35 184-219 87-121 (590)
299 PRK13409 putative ATPase RIL; 97.8 1.2E-05 2.7E-10 79.5 3.4 34 186-219 354-387 (590)
300 COG4778 PhnL ABC-type phosphon 97.8 1.7E-05 3.8E-10 68.4 3.7 40 180-219 20-59 (235)
301 TIGR01192 chvA glucan exporter 97.8 1.4E-05 3E-10 78.6 3.6 34 185-218 349-382 (585)
302 PLN03130 ABC transporter C fam 97.8 2.6E-05 5.7E-10 85.1 5.9 35 185-219 1253-1287(1622)
303 TIGR01846 type_I_sec_HlyB type 97.8 1.6E-05 3.5E-10 79.4 3.8 35 184-218 470-504 (694)
304 COG4133 CcmA ABC-type transpor 97.8 2.3E-05 4.9E-10 68.0 3.9 38 183-220 14-51 (209)
305 cd03282 ABC_MSH4_euk MutS4 hom 97.8 3.3E-05 7.1E-10 66.7 4.9 41 183-223 15-55 (204)
306 COG4988 CydD ABC-type transpor 97.8 3.3E-05 7.1E-10 75.9 5.3 34 185-218 335-368 (559)
307 COG4987 CydC ABC-type transpor 97.8 1.9E-05 4E-10 77.3 3.5 37 182-218 349-385 (573)
308 COG4586 ABC-type uncharacteriz 97.8 1.9E-05 4E-10 72.1 3.2 41 180-220 33-73 (325)
309 COG2401 ABC-type ATPase fused 97.7 6.6E-05 1.4E-09 72.2 6.3 117 90-219 315-431 (593)
310 COG4178 ABC-type uncharacteriz 97.7 4.8E-05 1E-09 75.6 5.4 35 185-219 407-441 (604)
311 PF13555 AAA_29: P-loop contai 97.7 3.7E-05 8E-10 55.1 3.2 29 193-221 18-47 (62)
312 TIGR03238 dnd_assoc_3 dnd syst 97.7 2.2E-05 4.7E-10 76.3 2.6 32 184-215 19-50 (504)
313 COG1119 ModF ABC-type molybden 97.7 3.2E-05 6.8E-10 69.3 3.3 36 183-218 43-78 (257)
314 COG1135 AbcC ABC-type metal io 97.7 4E-05 8.6E-10 70.9 3.8 38 182-219 17-54 (339)
315 TIGR01271 CFTR_protein cystic 97.7 3.2E-05 7E-10 83.7 3.7 35 184-218 439-473 (1490)
316 COG4674 Uncharacterized ABC-ty 97.6 3.8E-05 8.3E-10 67.4 3.4 34 185-218 19-52 (249)
317 COG1123 ATPase components of v 97.6 7.7E-05 1.7E-09 73.3 5.9 35 184-218 22-56 (539)
318 PTZ00265 multidrug resistance 97.6 3.6E-05 7.9E-10 83.3 3.8 37 184-220 398-434 (1466)
319 COG4152 ABC-type uncharacteriz 97.6 4.8E-05 1E-09 68.7 3.8 37 182-218 13-49 (300)
320 KOG0054 Multidrug resistance-a 97.6 0.0001 2.2E-09 79.1 6.4 37 185-221 1154-1190(1381)
321 cd03280 ABC_MutS2 MutS2 homolo 97.6 0.0001 2.2E-09 62.7 5.2 37 187-223 17-54 (200)
322 COG1129 MglA ABC-type sugar tr 97.6 5.6E-05 1.2E-09 73.6 3.8 37 182-218 19-55 (500)
323 PTZ00243 ABC transporter; Prov 97.6 5.1E-05 1.1E-09 82.6 3.7 35 184-218 673-707 (1560)
324 COG0488 Uup ATPase components 97.6 5.9E-05 1.3E-09 74.1 3.8 35 184-218 335-369 (530)
325 PLN03232 ABC transporter C fam 97.6 5.6E-05 1.2E-09 81.9 3.8 35 184-218 630-664 (1495)
326 cd03287 ABC_MSH3_euk MutS3 hom 97.6 9.4E-05 2E-09 64.9 4.6 39 184-222 18-56 (222)
327 TIGR00957 MRP_assoc_pro multi 97.5 6.3E-05 1.4E-09 81.7 3.7 35 184-218 651-685 (1522)
328 cd03243 ABC_MutS_homologs The 97.5 0.00013 2.8E-09 62.0 4.6 36 185-222 19-54 (202)
329 cd03284 ABC_MutS1 MutS1 homolo 97.5 0.00012 2.5E-09 63.7 4.2 40 184-224 18-57 (216)
330 COG1123 ATPase components of v 97.5 9.4E-05 2E-09 72.7 4.0 39 182-220 302-340 (539)
331 PTZ00265 multidrug resistance 97.5 8.4E-05 1.8E-09 80.5 3.9 35 184-218 1181-1215(1466)
332 PLN03130 ABC transporter C fam 97.5 8.5E-05 1.8E-09 81.2 3.8 35 184-218 630-664 (1622)
333 TIGR01257 rim_protein retinal- 97.4 9.1E-05 2E-09 82.6 3.7 36 184-219 1952-1987(2272)
334 COG0488 Uup ATPase components 97.4 9.4E-05 2E-09 72.7 3.2 35 184-218 16-50 (530)
335 COG4161 ArtP ABC-type arginine 97.4 0.00012 2.6E-09 62.9 3.4 36 185-220 16-51 (242)
336 TIGR01257 rim_protein retinal- 97.4 0.0001 2.3E-09 82.1 3.7 37 184-220 943-979 (2272)
337 COG4107 PhnK ABC-type phosphon 97.4 0.00013 2.7E-09 63.4 3.3 32 187-218 22-53 (258)
338 COG1137 YhbG ABC-type (unclass 97.4 0.0001 2.3E-09 64.8 2.7 34 182-215 15-48 (243)
339 COG0444 DppD ABC-type dipeptid 97.4 0.00032 6.9E-09 64.9 5.8 38 183-220 17-54 (316)
340 COG4136 ABC-type uncharacteriz 97.4 0.00016 3.6E-09 61.4 3.6 34 184-217 15-48 (213)
341 COG3845 ABC-type uncharacteriz 97.3 0.00019 4.2E-09 69.6 3.5 37 183-219 16-52 (501)
342 cd03285 ABC_MSH2_euk MutS2 hom 97.3 0.00034 7.3E-09 61.1 4.8 40 184-223 17-56 (222)
343 KOG0055 Multidrug/pheromone ex 97.2 0.00022 4.7E-09 75.5 3.7 36 183-218 365-400 (1228)
344 COG4604 CeuD ABC-type enteroch 97.2 0.00027 5.8E-09 62.3 3.6 38 182-219 12-49 (252)
345 COG4598 HisP ABC-type histidin 97.2 0.0003 6.4E-09 61.4 3.6 39 182-220 17-55 (256)
346 cd01122 GP4d_helicase GP4d_hel 97.2 0.00049 1.1E-08 60.6 4.4 39 183-221 16-54 (271)
347 TIGR00750 lao LAO/AO transport 97.1 0.00027 5.8E-09 64.2 2.7 38 183-220 20-57 (300)
348 cd03286 ABC_MSH6_euk MutS6 hom 97.1 0.00074 1.6E-08 59.1 4.8 41 184-224 17-57 (218)
349 COG4608 AppF ABC-type oligopep 97.1 0.00055 1.2E-08 62.0 3.9 37 183-219 25-61 (268)
350 PF13481 AAA_25: AAA domain; P 97.0 0.00061 1.3E-08 56.5 3.4 31 192-222 27-57 (193)
351 COG5265 ATM1 ABC-type transpor 97.0 0.00052 1.1E-08 65.9 3.1 37 183-219 275-311 (497)
352 cd03279 ABC_sbcCD SbcCD and ot 97.0 0.00051 1.1E-08 58.9 2.7 25 195-219 26-50 (213)
353 TIGR02788 VirB11 P-type DNA tr 96.9 0.00039 8.5E-09 63.4 1.5 30 189-218 136-165 (308)
354 cd00009 AAA The AAA+ (ATPases 96.9 0.00077 1.7E-08 51.2 3.0 26 196-221 18-43 (151)
355 TIGR03015 pepcterm_ATPase puta 96.9 0.00022 4.7E-09 62.3 -0.3 36 184-219 29-65 (269)
356 KOG0054 Multidrug resistance-a 96.8 0.0009 1.9E-08 72.0 3.7 34 185-218 535-568 (1381)
357 TIGR02524 dot_icm_DotB Dot/Icm 96.8 0.00081 1.8E-08 63.0 2.9 25 194-218 131-155 (358)
358 PF13245 AAA_19: Part of AAA d 96.8 0.0013 2.9E-08 48.3 3.3 24 196-219 9-33 (76)
359 COG1101 PhnK ABC-type uncharac 96.7 0.001 2.2E-08 59.3 2.8 37 182-218 17-53 (263)
360 PRK14722 flhF flagellar biosyn 96.7 0.0011 2.3E-08 62.7 3.1 38 184-221 124-161 (374)
361 COG4175 ProV ABC-type proline/ 96.7 0.0013 2.8E-08 61.5 3.5 33 186-218 43-75 (386)
362 PRK05973 replicative DNA helic 96.7 0.001 2.2E-08 59.2 2.7 35 187-221 54-88 (237)
363 TIGR00150 HI0065_YjeE ATPase, 96.7 0.0013 2.9E-08 53.6 2.8 30 191-220 16-45 (133)
364 cd03281 ABC_MSH5_euk MutS5 hom 96.7 0.0022 4.7E-08 55.6 4.3 36 185-222 17-54 (213)
365 PRK09183 transposase/IS protei 96.6 0.0016 3.5E-08 58.2 3.3 37 184-221 90-126 (259)
366 TIGR01420 pilT_fam pilus retra 96.6 0.0014 3E-08 60.7 2.9 25 194-218 119-143 (343)
367 KOG0927 Predicted transporter 96.6 0.0029 6.3E-08 62.4 4.9 36 184-219 88-123 (614)
368 TIGR00630 uvra excinuclease AB 96.6 0.0026 5.7E-08 66.4 4.8 36 184-219 620-655 (924)
369 KOG2355 Predicted ABC-type tra 96.5 0.0015 3.2E-08 58.2 2.4 34 185-218 28-61 (291)
370 PRK09270 nucleoside triphospha 96.5 0.0022 4.7E-08 55.7 3.1 24 196-219 32-55 (229)
371 PRK13851 type IV secretion sys 96.5 0.0015 3.3E-08 61.0 2.1 28 191-218 156-183 (344)
372 TIGR02239 recomb_RAD51 DNA rep 96.4 0.0022 4.7E-08 59.1 2.9 36 187-222 85-121 (316)
373 COG3854 SpoIIIAA ncharacterize 96.4 0.0027 5.7E-08 57.3 3.3 28 196-223 135-163 (308)
374 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0025 5.4E-08 60.1 3.0 25 196-220 77-101 (361)
375 TIGR00767 rho transcription te 96.4 0.0034 7.3E-08 60.1 3.9 31 189-219 160-190 (415)
376 PF00437 T2SE: Type II/IV secr 96.4 0.0021 4.5E-08 56.8 2.3 31 188-218 118-148 (270)
377 cd02019 NK Nucleoside/nucleoti 96.3 0.003 6.5E-08 45.1 2.6 21 200-220 2-22 (69)
378 PRK10416 signal recognition pa 96.3 0.0035 7.6E-08 57.8 3.6 27 195-221 112-138 (318)
379 TIGR00665 DnaB replicative DNA 96.3 0.0031 6.7E-08 59.7 3.3 40 183-222 181-220 (434)
380 TIGR01069 mutS2 MutS2 family p 96.3 0.0057 1.2E-07 62.7 5.4 37 190-226 314-351 (771)
381 PLN02796 D-glycerate 3-kinase 96.3 0.0015 3.3E-08 61.2 1.1 23 199-221 102-124 (347)
382 PRK10463 hydrogenase nickel in 96.3 0.0034 7.3E-08 57.5 3.2 23 196-218 103-125 (290)
383 cd03227 ABC_Class2 ABC-type Cl 96.2 0.0046 1E-07 50.9 3.7 29 196-224 20-48 (162)
384 PRK06002 fliI flagellum-specif 96.2 0.0035 7.6E-08 60.7 3.3 35 184-219 153-187 (450)
385 PRK15494 era GTPase Era; Provi 96.2 0.0033 7.1E-08 58.2 2.9 33 186-218 34-73 (339)
386 cd01878 HflX HflX subfamily. 96.2 0.0032 6.9E-08 52.8 2.5 21 199-219 43-63 (204)
387 TIGR00602 rad24 checkpoint pro 96.2 0.0028 6.1E-08 63.7 2.5 36 185-220 98-133 (637)
388 PRK08149 ATP synthase SpaL; Va 96.2 0.0045 9.8E-08 59.5 3.6 34 184-218 139-172 (428)
389 TIGR02782 TrbB_P P-type conjug 96.2 0.003 6.4E-08 57.7 2.3 26 193-218 128-153 (299)
390 PRK00098 GTPase RsgA; Reviewed 96.1 0.0037 7.9E-08 56.8 2.7 23 196-218 163-185 (298)
391 PRK00349 uvrA excinuclease ABC 96.1 0.0064 1.4E-07 63.7 4.7 36 184-219 622-657 (943)
392 cd01136 ATPase_flagellum-secre 96.1 0.0052 1.1E-07 57.1 3.6 34 184-218 57-90 (326)
393 PF03193 DUF258: Protein of un 96.1 0.0044 9.5E-08 52.2 2.9 28 190-218 29-56 (161)
394 cd01129 PulE-GspE PulE/GspE Th 96.1 0.0045 9.7E-08 55.5 3.0 24 195-218 78-101 (264)
395 PLN02200 adenylate kinase fami 96.1 0.0051 1.1E-07 54.2 3.2 25 194-218 40-64 (234)
396 KOG0055 Multidrug/pheromone ex 96.1 0.005 1.1E-07 65.5 3.7 36 182-217 1001-1036(1228)
397 PRK13894 conjugal transfer ATP 96.0 0.0036 7.8E-08 57.8 2.2 26 193-218 144-169 (319)
398 TIGR02858 spore_III_AA stage I 96.0 0.0043 9.3E-08 56.1 2.5 22 198-219 112-133 (270)
399 PRK07196 fliI flagellum-specif 96.0 0.0066 1.4E-07 58.5 3.8 34 184-218 143-176 (434)
400 PRK00635 excinuclease ABC subu 96.0 0.0077 1.7E-07 66.6 4.7 35 184-218 608-642 (1809)
401 KOG2373 Predicted mitochondria 96.0 0.0019 4.1E-08 61.1 0.1 38 182-219 258-295 (514)
402 PRK07721 fliI flagellum-specif 96.0 0.0061 1.3E-07 58.8 3.5 35 184-219 146-180 (438)
403 TIGR01526 nadR_NMN_Atrans nico 95.9 0.003 6.6E-08 58.3 1.3 31 189-219 152-184 (325)
404 cd01858 NGP_1 NGP-1. Autoanti 95.9 0.0063 1.4E-07 49.4 3.0 20 199-218 104-123 (157)
405 KOG0060 Long-chain acyl-CoA tr 95.9 0.0066 1.4E-07 60.4 3.5 42 183-226 447-488 (659)
406 PRK13900 type IV secretion sys 95.9 0.004 8.7E-08 57.8 2.0 28 191-218 154-181 (332)
407 cd01882 BMS1 Bms1. Bms1 is an 95.9 0.0055 1.2E-07 53.3 2.7 28 192-219 34-61 (225)
408 cd01121 Sms Sms (bacterial rad 95.9 0.0053 1.2E-07 57.9 2.8 34 187-220 71-105 (372)
409 PTZ00035 Rad51 protein; Provis 95.9 0.0062 1.3E-07 56.6 3.1 31 191-221 112-142 (337)
410 TIGR03600 phage_DnaB phage rep 95.9 0.0053 1.1E-07 58.1 2.7 39 183-221 180-218 (421)
411 cd01854 YjeQ_engC YjeQ/EngC. 95.9 0.0058 1.2E-07 55.3 2.7 23 197-219 161-183 (287)
412 TIGR00554 panK_bact pantothena 95.9 0.0069 1.5E-07 55.4 3.2 23 198-220 63-85 (290)
413 PRK01889 GTPase RsgA; Reviewed 95.8 0.0032 6.9E-08 58.8 1.0 32 187-218 185-216 (356)
414 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.0089 1.9E-07 53.2 3.5 30 188-217 27-56 (259)
415 TIGR00416 sms DNA repair prote 95.8 0.0066 1.4E-07 58.6 2.8 34 186-219 82-116 (454)
416 TIGR02525 plasmid_TraJ plasmid 95.7 0.006 1.3E-07 57.6 2.4 24 195-218 147-170 (372)
417 PRK14721 flhF flagellar biosyn 95.7 0.0071 1.5E-07 58.0 2.9 27 193-219 187-213 (420)
418 COG4167 SapF ABC-type antimicr 95.7 0.0099 2.1E-07 52.2 3.5 38 182-219 24-61 (267)
419 PRK13833 conjugal transfer pro 95.7 0.0061 1.3E-07 56.6 2.2 28 193-220 140-167 (323)
420 PF00488 MutS_V: MutS domain V 95.7 0.011 2.4E-07 52.2 3.7 41 184-224 30-70 (235)
421 COG4615 PvdE ABC-type sideroph 95.7 0.011 2.3E-07 57.0 3.8 32 187-218 339-370 (546)
422 PF01580 FtsK_SpoIIIE: FtsK/Sp 95.7 0.0087 1.9E-07 50.6 2.9 37 186-222 27-63 (205)
423 PRK06995 flhF flagellar biosyn 95.6 0.0083 1.8E-07 58.6 3.0 36 185-220 244-279 (484)
424 KOG0059 Lipid exporter ABCA1 a 95.6 0.0098 2.1E-07 61.8 3.6 33 186-218 580-612 (885)
425 PTZ00454 26S protease regulato 95.6 0.008 1.7E-07 57.1 2.7 26 194-219 176-201 (398)
426 PRK09862 putative ATP-dependen 95.6 0.008 1.7E-07 59.0 2.7 35 184-218 197-231 (506)
427 PRK14723 flhF flagellar biosyn 95.6 0.009 2E-07 61.2 3.2 37 184-220 172-208 (767)
428 PRK06731 flhF flagellar biosyn 95.6 0.014 3.1E-07 52.8 4.0 25 196-220 74-98 (270)
429 PRK09165 replicative DNA helic 95.6 0.0079 1.7E-07 58.7 2.5 38 184-221 204-241 (497)
430 PRK08972 fliI flagellum-specif 95.6 0.011 2.5E-07 57.1 3.5 34 184-218 150-183 (444)
431 TIGR02546 III_secr_ATP type II 95.6 0.0094 2E-07 57.1 3.0 35 184-219 133-167 (422)
432 PRK09099 type III secretion sy 95.5 0.012 2.6E-07 56.8 3.6 35 184-219 151-185 (441)
433 PRK09435 membrane ATPase/prote 95.5 0.0078 1.7E-07 56.1 2.2 27 195-221 54-80 (332)
434 PRK07004 replicative DNA helic 95.4 0.01 2.2E-07 57.3 2.8 38 182-219 198-235 (460)
435 PRK07594 type III secretion sy 95.4 0.012 2.5E-07 56.9 3.1 34 184-218 143-176 (433)
436 PRK05595 replicative DNA helic 95.4 0.0091 2E-07 57.1 2.4 38 182-219 186-223 (444)
437 TIGR02236 recomb_radA DNA repa 95.4 0.012 2.6E-07 53.3 3.0 30 191-220 89-118 (310)
438 TIGR00368 Mg chelatase-related 95.4 0.0084 1.8E-07 58.7 2.1 34 185-218 199-232 (499)
439 PRK08760 replicative DNA helic 95.4 0.011 2.4E-07 57.3 2.9 39 183-221 215-253 (476)
440 cd01853 Toc34_like Toc34-like 95.4 0.01 2.3E-07 52.9 2.4 21 199-219 33-53 (249)
441 KOG0062 ATPase component of AB 95.4 0.011 2.4E-07 58.1 2.8 36 184-219 93-128 (582)
442 TIGR02012 tigrfam_recA protein 95.4 0.016 3.5E-07 53.8 3.7 26 192-217 50-75 (321)
443 PRK11823 DNA repair protein Ra 95.3 0.015 3.2E-07 56.1 3.5 36 185-220 67-103 (446)
444 PRK05636 replicative DNA helic 95.3 0.013 2.9E-07 57.3 3.2 37 184-220 252-288 (505)
445 PHA02542 41 41 helicase; Provi 95.3 0.011 2.5E-07 57.4 2.7 39 183-221 175-214 (473)
446 TIGR03420 DnaA_homol_Hda DnaA 95.3 0.014 3E-07 49.6 2.9 26 195-220 36-61 (226)
447 PRK05688 fliI flagellum-specif 95.3 0.016 3.4E-07 56.2 3.6 34 184-218 156-189 (451)
448 PF03215 Rad17: Rad17 cell cyc 95.3 0.012 2.6E-07 57.9 2.9 25 195-219 43-67 (519)
449 PRK00635 excinuclease ABC subu 95.3 0.017 3.7E-07 64.0 4.1 33 185-217 949-981 (1809)
450 TIGR03496 FliI_clade1 flagella 95.3 0.018 3.9E-07 55.1 3.8 34 184-218 125-158 (411)
451 PRK08506 replicative DNA helic 95.2 0.014 3E-07 56.6 3.0 40 182-221 177-216 (472)
452 TIGR01026 fliI_yscN ATPase Fli 95.2 0.013 2.9E-07 56.5 2.9 35 184-219 151-185 (440)
453 cd01849 YlqF_related_GTPase Yl 95.2 0.015 3.2E-07 47.2 2.7 23 196-218 99-121 (155)
454 PRK05748 replicative DNA helic 95.2 0.012 2.5E-07 56.4 2.5 39 183-221 189-227 (448)
455 PRK06936 type III secretion sy 95.2 0.018 3.8E-07 55.7 3.7 35 184-219 150-184 (439)
456 PLN02165 adenylate isopentenyl 95.2 0.014 3E-07 54.6 2.8 26 195-220 41-66 (334)
457 cd00983 recA RecA is a bacter 95.2 0.02 4.3E-07 53.3 3.8 29 192-220 50-78 (325)
458 PRK13477 bifunctional pantoate 95.2 0.016 3.5E-07 56.9 3.3 34 184-218 272-305 (512)
459 TIGR00157 ribosome small subun 95.1 0.015 3.3E-07 51.4 2.8 21 198-218 121-141 (245)
460 cd01855 YqeH YqeH. YqeH is an 95.1 0.0073 1.6E-07 50.5 0.7 24 197-220 127-150 (190)
461 PRK08472 fliI flagellum-specif 95.1 0.016 3.5E-07 55.8 3.1 35 184-219 145-179 (434)
462 PLN03186 DNA repair protein RA 95.1 0.014 3.1E-07 54.4 2.7 36 187-222 112-148 (342)
463 PRK06321 replicative DNA helic 95.1 0.012 2.5E-07 57.3 2.1 38 183-220 212-249 (472)
464 PRK08006 replicative DNA helic 95.1 0.014 3.1E-07 56.6 2.7 40 182-221 209-248 (471)
465 TIGR03497 FliI_clade2 flagella 95.1 0.02 4.2E-07 54.9 3.6 35 184-219 125-159 (413)
466 PRK13764 ATPase; Provisional 95.1 0.015 3.2E-07 58.3 2.7 25 195-219 255-279 (602)
467 COG4172 ABC-type uncharacteriz 95.1 0.023 5E-07 54.9 3.9 38 181-218 297-334 (534)
468 TIGR01242 26Sp45 26S proteasom 95.0 0.016 3.6E-07 53.7 2.8 25 195-219 154-178 (364)
469 KOG0064 Peroxisomal long-chain 95.0 0.022 4.8E-07 56.6 3.7 40 186-227 497-536 (728)
470 TIGR02238 recomb_DMC1 meiotic 95.0 0.019 4E-07 53.0 3.0 32 191-222 90-121 (313)
471 TIGR02881 spore_V_K stage V sp 95.0 0.017 3.6E-07 51.1 2.5 21 200-220 45-65 (261)
472 cd01857 HSR1_MMR1 HSR1/MMR1. 95.0 0.02 4.4E-07 45.8 2.7 20 199-218 85-104 (141)
473 TIGR02533 type_II_gspE general 94.8 0.019 4.1E-07 55.9 2.8 23 195-217 240-262 (486)
474 TIGR01243 CDC48 AAA family ATP 94.8 0.019 4.1E-07 58.3 2.8 26 194-219 209-234 (733)
475 PRK06904 replicative DNA helic 94.8 0.021 4.4E-07 55.5 3.0 39 183-221 207-245 (472)
476 PRK15455 PrkA family serine pr 94.8 0.021 4.5E-07 57.3 3.0 26 194-219 100-125 (644)
477 PLN03187 meiotic recombination 94.8 0.023 5E-07 53.2 3.1 31 191-221 120-150 (344)
478 PRK12288 GTPase RsgA; Reviewed 94.8 0.016 3.4E-07 54.2 2.0 21 198-218 206-226 (347)
479 PRK04301 radA DNA repair and r 94.8 0.024 5.1E-07 51.8 3.1 31 191-221 96-126 (317)
480 KOG1970 Checkpoint RAD17-RFC c 94.8 0.023 4.9E-07 56.4 3.1 24 196-219 109-132 (634)
481 PLN02674 adenylate kinase 94.7 0.025 5.4E-07 50.6 2.9 21 199-219 33-53 (244)
482 PTZ00361 26 proteosome regulat 94.7 0.022 4.7E-07 55.0 2.7 26 194-219 214-239 (438)
483 PHA02562 46 endonuclease subun 94.7 0.036 7.9E-07 53.7 4.3 27 195-221 25-51 (562)
484 PRK08154 anaerobic benzoate ca 94.6 0.025 5.4E-07 51.7 2.9 29 191-219 127-155 (309)
485 PF08298 AAA_PrkA: PrkA AAA do 94.6 0.024 5.1E-07 53.4 2.7 20 198-217 89-108 (358)
486 PRK12289 GTPase RsgA; Reviewed 94.6 0.021 4.6E-07 53.5 2.4 21 198-218 173-193 (352)
487 PRK08903 DnaA regulatory inact 94.6 0.027 6E-07 48.3 2.9 27 195-221 40-66 (227)
488 TIGR02655 circ_KaiC circadian 94.6 0.018 4E-07 55.7 2.0 31 187-217 252-283 (484)
489 PRK09302 circadian clock prote 94.6 0.024 5.1E-07 55.0 2.7 33 186-218 19-52 (509)
490 TIGR03185 DNA_S_dndD DNA sulfu 94.5 0.036 7.7E-07 55.6 3.9 32 189-220 19-51 (650)
491 COG4172 ABC-type uncharacteriz 94.5 0.07 1.5E-06 51.7 5.6 35 183-217 22-56 (534)
492 TIGR03498 FliI_clade3 flagella 94.4 0.03 6.5E-07 53.7 3.0 34 184-218 128-161 (418)
493 PF02367 UPF0079: Uncharacteri 94.4 0.028 6.1E-07 45.3 2.4 27 193-219 11-37 (123)
494 PRK08840 replicative DNA helic 94.4 0.027 5.8E-07 54.6 2.6 39 182-220 202-240 (464)
495 PRK12726 flagellar biosynthesi 94.4 0.046 1E-06 52.3 4.0 28 193-220 202-229 (407)
496 TIGR03499 FlhF flagellar biosy 94.4 0.04 8.7E-07 49.7 3.5 27 195-221 192-218 (282)
497 PRK13873 conjugal transfer ATP 94.4 0.031 6.8E-07 57.4 3.1 23 199-221 443-465 (811)
498 PRK04863 mukB cell division pr 94.3 0.027 5.8E-07 61.6 2.7 35 188-223 19-53 (1486)
499 PRK06820 type III secretion sy 94.3 0.044 9.5E-07 53.0 3.7 35 184-219 151-185 (440)
500 COG1855 ATPase (PilT family) [ 94.2 0.031 6.7E-07 54.6 2.6 27 186-219 259-285 (604)
No 1
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.3e-38 Score=336.08 Aligned_cols=197 Identities=36% Similarity=0.523 Sum_probs=159.4
Q ss_pred hhhhccccccccCCcc--cccccccC-CC----CCcchHHhhHHHHHhhCCchhhhhcccccccCCCccccc-cCccccc
Q 037424 20 IGRSLKSSFRLQTSSF--RSSSAISS-RR----EDTDVENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDN-QGKQAIN 91 (231)
Q Consensus 20 ~~~~~~~~~~~~~~~~--~~~~~~~~-~~----~~~~dee~l~waaierLPt~~r~r~~~l~~~~~~~g~~~-~~~~~vd 91 (231)
+.|+++++. +.++| +++|++.+ ++ ..+||||+|+|||+||||||+|+|++++.....++|.+. ....++|
T Consensus 8 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1470)
T PLN03140 8 MRRSISRSV--SRSSRNMEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVD 85 (1470)
T ss_pred HHHHHHHHh--hhhhhhhhhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccc
Confidence 445544333 23356 78885532 21 256889999999999999999999999954210122110 0011499
Q ss_pred ccCCChhhhhHHHHHHHhhcccCHHHHHHHHHHhhhhcCCCCCeeEEEEEeEEEEEeeeeccCCCCCCchhhhhhhhhhc
Q 037424 92 VTKLGALERHVFIEKLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVL 171 (231)
Q Consensus 92 v~~L~~~~~~~l~~~l~~~~~~D~~~~L~~lr~r~drvGi~lp~ieVrfenLsV~a~~~~vg~~~lPTL~n~~~~~~~~l 171 (231)
+.+|+.++++.+++++++++++|+++|++++++|.+++|+++|++||+|+||+|+|++ +++++++||++|.+.+.++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~-~~~~~~~~t~~~~~~~~~~~~ 164 (1470)
T PLN03140 86 VTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADC-YIGSRALPTLPNAARNIAESA 164 (1470)
T ss_pred cccCChHHHHHHHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEe-cCCcccCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 899999999999999988866
Q ss_pred ccccCC-CCccccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 172 PKLSGY-KSLEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 172 ~~~~~~-~~kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
...++. .+++.+++||+||||.|+||||++||||||||||||||+|+=
T Consensus 165 ~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG 213 (1470)
T PLN03140 165 LGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAG 213 (1470)
T ss_pred HHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhC
Confidence 554443 344567889999999999999999999999999999999873
No 2
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=5.1e-29 Score=256.42 Aligned_cols=151 Identities=42% Similarity=0.604 Sum_probs=133.5
Q ss_pred cchHHhhHHHHHhhCCchhhhhcccccccCCCccccccCcccccccCCChhhhhHHHHHHHhhcccCHHHHHHHHHHhhh
Q 037424 48 TDVENALQWAEIERLPTYDRLKTSLFDVNSNKDLVDNQGKQAINVTKLGALERHVFIEKLIKHIEHDNLQLLRKIRKRMD 127 (231)
Q Consensus 48 ~~dee~l~waaierLPt~~r~r~~~l~~~~~~~g~~~~~~~~vdv~~L~~~~~~~l~~~l~~~~~~D~~~~L~~lr~r~d 127 (231)
+|||++|||||+|||||++| +++.... ++ ++|+.+++..+++.++++.++..++|+++++.+++++++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~--~~-------~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~ 79 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIF--ES-------EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERID 79 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhc--cC-------cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcC
Confidence 45999999999999999999 6664321 11 499999999999999999999999999999999999999
Q ss_pred hcCCCCCeeEEEEEeEEEEEeeeeccCCCCCCchhhhhhhhhhcccccCCCCccccccccccceeEEeCCeEEEEecCCC
Q 037424 128 KVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNRVSGILKPGSVNLADCLTF 207 (231)
Q Consensus 128 rvGi~lp~ieVrfenLsV~a~~~~vg~~~lPTL~n~~~~~~~~l~~~~~~~~kk~~~~IL~dVSGiiKPGeMTLVLGrPG 207 (231)
++ +.|+++++|+++.++|++ ..| ||++|.+.+.++..++..+.. ++++++||+|++|+++||||||||||||
T Consensus 80 ~~--~~p~~~~~~~~~gv~a~~-~~~----~t~~n~~~~~~~~~~~~~~~~-~~~~~~il~~~sg~~~pg~m~lvLG~pg 151 (1391)
T KOG0065|consen 80 RV--ELPTIEVRFSALGVEADV-TYG----PTLVNILSNPLESILRMLGKR-KKKKIQILKDISGIIKPGEMTLVLGPPG 151 (1391)
T ss_pred cc--cCCceEEEeeeccccccc-ccc----hhhhhhhhhHHHHHhhhcccc-ccccceeecCcceeEcCCceEEEecCCC
Confidence 97 899999999999999998 555 999999999888766544333 5667899999999999999999999999
Q ss_pred CCchhHHHHHH
Q 037424 208 LHPLDVFQVLF 218 (231)
Q Consensus 208 SGcSTlLK~L~ 218 (231)
||||||||+|+
T Consensus 152 sG~ttllkal~ 162 (1391)
T KOG0065|consen 152 SGKTTLLKALA 162 (1391)
T ss_pred CchHHHHHHHh
Confidence 99999999986
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.68 E-value=9.5e-17 Score=170.33 Aligned_cols=106 Identities=18% Similarity=0.162 Sum_probs=84.6
Q ss_pred ccCHHHHHHHHHHhhhhcC--CCCCeeEEEEEeEEEEEeeeeccCCCCCCchhhhhhhhhhcccccCCCCcccccccccc
Q 037424 112 EHDNLQLLRKIRKRMDKVG--VKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNR 189 (231)
Q Consensus 112 ~~D~~~~L~~lr~r~drvG--i~lp~ieVrfenLsV~a~~~~vg~~~lPTL~n~~~~~~~~l~~~~~~~~kk~~~~IL~d 189 (231)
++|+++|++.+.++.++.+ ++.++++|+|+||+|++. ..+...+||++|.+.+.+......+..++++++++||+|
T Consensus 2 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 79 (1394)
T TIGR00956 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGV--AADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKP 79 (1394)
T ss_pred CCCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEEE--eccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeC
Confidence 4788999987666555555 445599999999999995 477788999999988876633322211334456889999
Q ss_pred ceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 190 VSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 190 VSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
|||.++||||++|+||||||||||||+|+-
T Consensus 80 vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG 109 (1394)
T TIGR00956 80 MDGLIKPGELTVVLGRPGSGCSTLLKTIAS 109 (1394)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 999999999999999999999999999873
No 4
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.99 E-value=6.6e-10 Score=110.06 Aligned_cols=57 Identities=26% Similarity=0.287 Sum_probs=48.8
Q ss_pred CCeeEEEEEeEEEEEeeeeccCCCCCCchhhhhhhhhhcccccCCCCccccccccccceeEEeCCeEEEEecCCCCCchh
Q 037424 133 LPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNRVSGILKPGSVNLADCLTFLHPLD 212 (231)
Q Consensus 133 lp~ieVrfenLsV~a~~~~vg~~~lPTL~n~~~~~~~~l~~~~~~~~kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcST 212 (231)
...+.+.|+|+++.+.. +.+ ..++||+||||.++||||+.+|||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~----------------------------~~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKE----------------------------KSK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecC----------------------------CCC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 45577889999998865 111 4578999999999999999999999999999
Q ss_pred HHHHHH
Q 037424 213 VFQVLF 218 (231)
Q Consensus 213 lLK~L~ 218 (231)
||++|+
T Consensus 72 LL~~La 77 (613)
T KOG0061|consen 72 LLNALA 77 (613)
T ss_pred HHHHHh
Confidence 999986
No 5
>PF14510 ABC_trans_N: ABC-transporter extracellular N-terminal
Probab=98.91 E-value=2.2e-09 Score=80.65 Aligned_cols=53 Identities=26% Similarity=0.310 Sum_probs=50.3
Q ss_pred ccCHHHHHHHHHHhhhhcCCCCCeeEEEEEeEEEEEeeeeccCCCCCCchhhhhh
Q 037424 112 EHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKG 166 (231)
Q Consensus 112 ~~D~~~~L~~lr~r~drvGi~lp~ieVrfenLsV~a~~~~vg~~~lPTL~n~~~~ 166 (231)
+||+++|+++++++.++.|++.|++||.|+||+|.|.+ .+..++||++|.+++
T Consensus 33 ~Fdl~~~lr~~~~~~~~~g~~~r~~GV~fknLtV~G~g--~~~~~q~Tv~n~~l~ 85 (85)
T PF14510_consen 33 DFDLRRWLRNFVRRAEEQGIKPRKAGVSFKNLTVYGVG--AGAQYQPTVGNVLLN 85 (85)
T ss_pred cccHHHHHHHHHHHHHhCCCCCCeEEEEEeCCeEEEEe--cCccccCchhhhhcC
Confidence 79999999999999999999999999999999999997 889999999998864
No 6
>PLN03211 ABC transporter G-25; Provisional
Probab=98.86 E-value=6.1e-09 Score=103.96 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=51.9
Q ss_pred CCeeEEEEEeEEEEEeeeeccCCCCCCchhhhhhhhhhcccccCCCCccccccccccceeEEeCCeEEEEecCCCCCchh
Q 037424 133 LPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNRVSGILKPGSVNLADCLTFLHPLD 212 (231)
Q Consensus 133 lp~ieVrfenLsV~a~~~~vg~~~lPTL~n~~~~~~~~l~~~~~~~~kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcST 212 (231)
.+.+.++|.|+++.+.. .....+... +...+..........++...+.||+|||+.++|||++.|+||+||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~-~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKF-ENMKNKGSN----IKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEcc-CCCcccccc----cccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 35689999999999764 110111111 1111111000000011122467999999999999999999999999999
Q ss_pred HHHHHH
Q 037424 213 VFQVLF 218 (231)
Q Consensus 213 lLK~L~ 218 (231)
|||+|+
T Consensus 110 LL~iLa 115 (659)
T PLN03211 110 LLNALA 115 (659)
T ss_pred HHHHHh
Confidence 999996
No 7
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.79 E-value=6.8e-09 Score=91.44 Aligned_cols=35 Identities=23% Similarity=0.108 Sum_probs=33.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.+|++||-.++||||+.|+||.|||||||||.|.
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~Ls 48 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALS 48 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhh
Confidence 45899999999999999999999999999999984
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=98.78 E-value=9.9e-09 Score=110.23 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=50.3
Q ss_pred CCCeeEEEEEeEEEEEeeeeccCCCCCCchhhhhhhhhhcccccCCCCccccccccccceeEEeCCeEEEEecCCCCCch
Q 037424 132 KLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNRVSGILKPGSVNLADCLTFLHPL 211 (231)
Q Consensus 132 ~lp~ieVrfenLsV~a~~~~vg~~~lPTL~n~~~~~~~~l~~~~~~~~kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcS 211 (231)
+...+.+.|+||++.... ....+. ......++.||+||||.|+||++++|+||+|||||
T Consensus 862 ~~~~~~~~~~~v~y~v~~-~~~~~~--------------------~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKT 920 (1470)
T PLN03140 862 PFTPLAMSFDDVNYFVDM-PAEMKE--------------------QGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKT 920 (1470)
T ss_pred CCCcceEEEEEEEEEEcc-Cccccc--------------------cccCcCCceEeeCcEEEEECCeEEEEECCCCCCHH
Confidence 444567899999999864 111000 01112345799999999999999999999999999
Q ss_pred hHHHHHHH
Q 037424 212 DVFQVLFL 219 (231)
Q Consensus 212 TlLK~L~~ 219 (231)
||||+|+=
T Consensus 921 TLL~~LaG 928 (1470)
T PLN03140 921 TLMDVLAG 928 (1470)
T ss_pred HHHHHHcC
Confidence 99999874
No 9
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.77 E-value=5.2e-09 Score=103.38 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=35.8
Q ss_pred cccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 181 EAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 181 k~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.++.||+|+||.|+||||++|+||+||||||||++|+-
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g 73 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAF 73 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence 445779999999999999999999999999999999973
No 10
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.64 E-value=2.1e-08 Score=90.91 Aligned_cols=36 Identities=17% Similarity=0.052 Sum_probs=34.4
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+.+|+|||..|+||+++.+|||+|||||||||+|.
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~ 52 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILA 52 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 477999999999999999999999999999999986
No 11
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.62 E-value=3.3e-08 Score=86.03 Aligned_cols=37 Identities=11% Similarity=-0.014 Sum_probs=34.5
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+.||+|+|..|+||+++.|+|+.|||||||||+|+-
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~G 69 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSG 69 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3569999999999999999999999999999999974
No 12
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.59 E-value=6.3e-08 Score=103.73 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=34.6
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+.||+||||.|+||+++.|+||+|||||||||+|+=
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag 811 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE 811 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 3569999999999999999999999999999999974
No 13
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=7.2e-08 Score=86.01 Aligned_cols=35 Identities=6% Similarity=-0.213 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|+|-.|+||+++.|+|++|||||||||+|+-
T Consensus 34 ~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999999999999999999983
No 14
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.58 E-value=4.1e-08 Score=83.89 Aligned_cols=37 Identities=8% Similarity=-0.181 Sum_probs=34.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
++||+|+|..|+||+++.|+||+|||||||||+|+-+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4599999999999999999999999999999999743
No 15
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.57 E-value=4.3e-08 Score=83.64 Aligned_cols=36 Identities=14% Similarity=-0.023 Sum_probs=33.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|+|..|+||+++.|+||+|||||||||+|+=
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 459999999999999999999999999999999974
No 16
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.56 E-value=1.4e-07 Score=80.01 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|+|-.|+||+.++|+|++|||||||||+|+-
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 458999999999999999999999999999999974
No 17
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.56 E-value=1e-07 Score=84.01 Aligned_cols=36 Identities=6% Similarity=-0.076 Sum_probs=33.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|+||+++.|+||+|||||||||+|+=+
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 489999999999999999999999999999999744
No 18
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=1.1e-07 Score=84.52 Aligned_cols=37 Identities=19% Similarity=-0.042 Sum_probs=34.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|+|..|+||+++.|+||+|||||||||+|+-+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3589999999999999999999999999999999754
No 19
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=1.2e-07 Score=83.02 Aligned_cols=36 Identities=11% Similarity=-0.024 Sum_probs=33.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|||-.|+||+++.|+|++|||||||||+|+-+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 489999999999999999999999999999999743
No 20
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.5e-07 Score=83.57 Aligned_cols=37 Identities=3% Similarity=-0.105 Sum_probs=34.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|||-.|+||+++.|+|++|||||||||+|+-+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999999999999999999754
No 21
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.9e-07 Score=82.62 Aligned_cols=36 Identities=8% Similarity=-0.063 Sum_probs=33.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus 35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 489999999999999999999999999999999754
No 22
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.4e-07 Score=83.94 Aligned_cols=36 Identities=14% Similarity=-0.022 Sum_probs=33.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 489999999999999999999999999999999743
No 23
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.53 E-value=6.5e-08 Score=82.15 Aligned_cols=36 Identities=17% Similarity=0.011 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 359999999999999999999999999999999974
No 24
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.53 E-value=6.4e-08 Score=82.32 Aligned_cols=35 Identities=6% Similarity=-0.078 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|+||++++|+|++|||||||||+|+=
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG 48 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999999999999999999974
No 25
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.53 E-value=6.1e-08 Score=85.56 Aligned_cols=37 Identities=14% Similarity=-0.002 Sum_probs=35.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.++|+|||-.|++||++.|+||+||||||||+.|..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 7899999999999999999999999999999998754
No 26
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.53 E-value=6.2e-08 Score=82.16 Aligned_cols=35 Identities=17% Similarity=0.018 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 48999999999999999999999999999999974
No 27
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=1.4e-07 Score=82.23 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 48999999999999999999999999999999974
No 28
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.52 E-value=6.9e-08 Score=82.17 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=34.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3599999999999999999999999999999998743
No 29
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.52 E-value=1.4e-07 Score=84.58 Aligned_cols=34 Identities=9% Similarity=0.085 Sum_probs=32.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+|+|||..|++|+++.|+||.|||||||+|+|.
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iL 51 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAIL 51 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3899999999999999999999999999999985
No 30
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.52 E-value=6.6e-08 Score=82.76 Aligned_cols=35 Identities=14% Similarity=-0.073 Sum_probs=33.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILG 53 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 59999999999999999999999999999999974
No 31
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.52 E-value=7.8e-08 Score=82.86 Aligned_cols=38 Identities=18% Similarity=-0.012 Sum_probs=34.8
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+++|+|+|..|+||+++.|+||+|||||||||+|.-+
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc
Confidence 35699999999999999999999999999999998743
No 32
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.52 E-value=6.8e-08 Score=82.43 Aligned_cols=36 Identities=6% Similarity=0.023 Sum_probs=33.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|+||+++.|+||+|||||||||+|+=+
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 599999999999999999999999999999998743
No 33
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.52 E-value=7.3e-08 Score=81.88 Aligned_cols=37 Identities=5% Similarity=0.037 Sum_probs=34.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3589999999999999999999999999999999743
No 34
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.51 E-value=7e-08 Score=83.52 Aligned_cols=37 Identities=14% Similarity=-0.034 Sum_probs=34.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|+|-.|+||+++.|+||+|||||||||+|+=+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3589999999999999999999999999999999743
No 35
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.51 E-value=7.7e-08 Score=80.14 Aligned_cols=36 Identities=19% Similarity=-0.032 Sum_probs=33.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+|+|+|..|+||++++|+|++|||||||||+|+=+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 489999999999999999999999999999999743
No 36
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=7.4e-08 Score=83.37 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999999999999999999973
No 37
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=7.9e-08 Score=81.92 Aligned_cols=38 Identities=29% Similarity=0.261 Sum_probs=34.8
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+.||+|+|..|+||+++.|+|++||||||||++|+=+
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhccc
Confidence 35699999999999999999999999999999998643
No 38
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.51 E-value=7.8e-08 Score=82.21 Aligned_cols=36 Identities=14% Similarity=-0.024 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+|+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G 53 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999999999999999999863
No 39
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=7.8e-08 Score=82.42 Aligned_cols=35 Identities=11% Similarity=-0.082 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999999999999999999974
No 40
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=9.1e-08 Score=80.83 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|+|..|+||+++.|+|++|||||||||+|+-
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999999999999999999984
No 41
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.51 E-value=7.8e-08 Score=86.38 Aligned_cols=36 Identities=14% Similarity=-0.052 Sum_probs=34.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|+|-.|++|++|.|+||.|||||||||+|+=
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 569999999999999999999999999999999873
No 42
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=8.6e-08 Score=82.17 Aligned_cols=36 Identities=8% Similarity=-0.004 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|-.|+||+.+.|+||+|||||||||+|+=
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G 52 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 469999999999999999999999999999999874
No 43
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1.7e-07 Score=81.86 Aligned_cols=36 Identities=6% Similarity=-0.105 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|+|..|.||+.+.|+|++|||||||||+|+-
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999999999999999999974
No 44
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.51 E-value=8.2e-08 Score=81.51 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 348999999999999999999999999999999974
No 45
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=8.9e-08 Score=81.55 Aligned_cols=36 Identities=11% Similarity=0.058 Sum_probs=33.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999999999999999999863
No 46
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.50 E-value=8.7e-08 Score=82.37 Aligned_cols=37 Identities=14% Similarity=0.019 Sum_probs=34.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.+|+|+|-.|.||+++.|+|++|||||||||+|+=+.
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5899999999999999999999999999999998653
No 47
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.50 E-value=5.7e-08 Score=102.16 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=35.4
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.++.||+||+|.+|||-||.|+|.+||||||||++|+
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA 838 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLA 838 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHh
Confidence 5688999999999999999999999999999999986
No 48
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.50 E-value=9e-08 Score=81.77 Aligned_cols=35 Identities=14% Similarity=-0.006 Sum_probs=33.2
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|+|-.|+||+++.|+||+|||||||||+|+-
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999999999999999999874
No 49
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.50 E-value=8.9e-08 Score=81.15 Aligned_cols=36 Identities=8% Similarity=-0.113 Sum_probs=33.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|+||+++.|+||+|||||||||+|+=+
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 599999999999999999999999999999998743
No 50
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=9.1e-08 Score=81.33 Aligned_cols=35 Identities=9% Similarity=-0.050 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|+|-.|.||+++.|+|++|||||||||+|+=
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 48999999999999999999999999999999974
No 51
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=9e-08 Score=83.81 Aligned_cols=36 Identities=6% Similarity=-0.119 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|-.|+||+++.|+||+|||||||||+|+-
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999999999999999999984
No 52
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=9.4e-08 Score=82.73 Aligned_cols=36 Identities=14% Similarity=-0.011 Sum_probs=33.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 459999999999999999999999999999999974
No 53
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.49 E-value=1.5e-07 Score=82.61 Aligned_cols=36 Identities=17% Similarity=-0.015 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|-.|+||+.+.|+|++|||||||||+|+=
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 49 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAG 49 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 359999999999999999999999999999999863
No 54
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.49 E-value=9.2e-08 Score=82.39 Aligned_cols=35 Identities=20% Similarity=0.088 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|..|+||+.++|+|++|||||||||+|+=
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG 48 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 59999999999999999999999999999999873
No 55
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.48 E-value=9.7e-08 Score=81.93 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=34.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4699999999999999999999999999999999744
No 56
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.48 E-value=9.9e-08 Score=82.17 Aligned_cols=35 Identities=17% Similarity=0.028 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 59999999999999999999999999999999973
No 57
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.48 E-value=1.1e-07 Score=83.27 Aligned_cols=36 Identities=11% Similarity=-0.036 Sum_probs=33.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 489999999999999999999999999999999743
No 58
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.48 E-value=9.6e-08 Score=84.73 Aligned_cols=36 Identities=11% Similarity=-0.123 Sum_probs=33.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 489999999999999999999999999999999754
No 59
>PRK10908 cell division protein FtsE; Provisional
Probab=98.48 E-value=1e-07 Score=81.77 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999999999999999999863
No 60
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.48 E-value=1e-07 Score=82.61 Aligned_cols=36 Identities=8% Similarity=-0.004 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|-.|+||++++|+||+|||||||||+|+-
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999999999999999999974
No 61
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=1e-07 Score=82.80 Aligned_cols=37 Identities=14% Similarity=-0.018 Sum_probs=34.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..||+|||-.|+||+++.|+||+|||||||||+|+-+
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3589999999999999999999999999999999743
No 62
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=1.2e-07 Score=78.62 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=33.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|+||+++.|+||+|||||||||+|+-+
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 589999999999999999999999999999999754
No 63
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=1.1e-07 Score=82.06 Aligned_cols=36 Identities=14% Similarity=-0.068 Sum_probs=33.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|+||+++.|+||+|||||||||+|+=+
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 699999999999999999999999999999999743
No 64
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.47 E-value=1.2e-07 Score=78.34 Aligned_cols=35 Identities=17% Similarity=0.033 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++|+|+|-.|+||+++.|+|++|||||||||+|+-
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSG 48 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999999999999999999874
No 65
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.47 E-value=1.1e-07 Score=82.19 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=33.2
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|+|-.|+||+++.|+|++|||||||||+|+-
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcC
Confidence 48999999999999999999999999999999973
No 66
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.47 E-value=3.9e-07 Score=81.32 Aligned_cols=39 Identities=10% Similarity=-0.162 Sum_probs=35.4
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+.+|+|+|-.|+||+++.|+||+|||||||||+|+=+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345799999999999999999999999999999999743
No 67
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=1.1e-07 Score=82.12 Aligned_cols=36 Identities=17% Similarity=0.003 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|-.|.||+++.|+|++|||||||||+|+-
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999999999999999999974
No 68
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.47 E-value=1.2e-07 Score=83.43 Aligned_cols=37 Identities=19% Similarity=-0.122 Sum_probs=34.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3589999999999999999999999999999999743
No 69
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.1e-07 Score=83.99 Aligned_cols=36 Identities=8% Similarity=-0.011 Sum_probs=33.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAG 49 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999999999999999999973
No 70
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.46 E-value=1.2e-07 Score=82.63 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=33.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|||-.|+||+++.|+|++|||||||||+|+-
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINL 51 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999999999999999999974
No 71
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.46 E-value=1.2e-07 Score=80.37 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|-.+.||+++.|+|++|||||||||+|+-
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 359999999999999999999999999999999973
No 72
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.46 E-value=1.2e-07 Score=80.54 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=33.1
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|||-.|+||+++.|+|++|||||||||+|+=
T Consensus 15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 49 (204)
T PRK13538 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAG 49 (204)
T ss_pred EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999999999999999999863
No 73
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.46 E-value=9.6e-08 Score=84.20 Aligned_cols=38 Identities=16% Similarity=0.042 Sum_probs=35.1
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..++|+|||-.|++||.+.++||+||||||||++|-.|
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 46799999999999999999999999999999998643
No 74
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.46 E-value=1.2e-07 Score=82.02 Aligned_cols=37 Identities=19% Similarity=0.092 Sum_probs=34.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|+|-.|+||++++|+|++|||||||||+|+-+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 4589999999999999999999999999999999854
No 75
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.46 E-value=1.2e-07 Score=82.25 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=33.5
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|+|..|+||+++.|+|++|||||||||+|+-
T Consensus 16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (242)
T TIGR03411 16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITG 50 (242)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999999999999999999974
No 76
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.46 E-value=1.3e-07 Score=79.17 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=32.7
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+|+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 8999999999999999999999999999999973
No 77
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.46 E-value=1.3e-07 Score=81.70 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=34.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|+|-.|+||+++.|+||+|||||||||+|+=+
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3589999999999999999999999999999998743
No 78
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.46 E-value=1.3e-07 Score=80.18 Aligned_cols=37 Identities=14% Similarity=0.046 Sum_probs=34.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3599999999999999999999999999999998743
No 79
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=1.3e-07 Score=82.36 Aligned_cols=37 Identities=8% Similarity=-0.045 Sum_probs=34.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..||+|+|-.|+||+++.|+||+|||||||||+|+-+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3599999999999999999999999999999999743
No 80
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.45 E-value=2.9e-07 Score=83.06 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=33.1
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|+|..|+||+.+.|+|++|||||||||+|+-
T Consensus 51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~G 85 (282)
T cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG 85 (282)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 48999999999999999999999999999999874
No 81
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=1.3e-07 Score=82.77 Aligned_cols=36 Identities=8% Similarity=-0.049 Sum_probs=33.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|..|+||+++.|+|++|||||||||+|+=+
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 589999999999999999999999999999998743
No 82
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.45 E-value=1.4e-07 Score=80.70 Aligned_cols=37 Identities=24% Similarity=0.127 Sum_probs=34.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3589999999999999999999999999999999743
No 83
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=1.4e-07 Score=78.26 Aligned_cols=35 Identities=9% Similarity=0.017 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|+|..+.||+++.|+|++|||||||||+|+-
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G 48 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG 48 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999999999999999999874
No 84
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.45 E-value=1.3e-07 Score=82.81 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMT 48 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999999999999999999974
No 85
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.45 E-value=1.4e-07 Score=83.03 Aligned_cols=36 Identities=17% Similarity=0.040 Sum_probs=34.0
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|+||+.+.|+|++|||||||||+|+=+
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 589999999999999999999999999999999854
No 86
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=1.4e-07 Score=81.09 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=33.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|..|+||+++.|+||+|||||||||+|+=+
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 489999999999999999999999999999999743
No 87
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=1.3e-07 Score=81.93 Aligned_cols=36 Identities=17% Similarity=0.026 Sum_probs=33.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+|+|+|..|+||+++.|+|++|||||||||+|+-
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 358999999999999999999999999999999863
No 88
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=1.4e-07 Score=82.59 Aligned_cols=37 Identities=14% Similarity=-0.066 Sum_probs=34.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..||+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3599999999999999999999999999999999754
No 89
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.45 E-value=1.4e-07 Score=81.79 Aligned_cols=36 Identities=19% Similarity=0.088 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+|+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 359999999999999999999999999999999973
No 90
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1.4e-07 Score=82.43 Aligned_cols=36 Identities=11% Similarity=-0.078 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+|+|+|..|+||+++.|+|++|||||||||+|+-
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 358999999999999999999999999999999974
No 91
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1e-07 Score=85.66 Aligned_cols=37 Identities=5% Similarity=-0.051 Sum_probs=34.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|+|-.|+||++++|+|++|||||||||+|+-+
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3599999999999999999999999999999999753
No 92
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.44 E-value=1.4e-07 Score=81.63 Aligned_cols=37 Identities=14% Similarity=-0.149 Sum_probs=34.6
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+.||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus 34 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3569999999999999999999999999999999974
No 93
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1.4e-07 Score=82.31 Aligned_cols=35 Identities=9% Similarity=-0.057 Sum_probs=33.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 48999999999999999999999999999999974
No 94
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=1.4e-07 Score=84.01 Aligned_cols=36 Identities=19% Similarity=-0.071 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 55 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNG 55 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999999999999999999874
No 95
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.44 E-value=1.5e-07 Score=80.88 Aligned_cols=36 Identities=19% Similarity=0.057 Sum_probs=33.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+|+|+|-.|+||+++.|+||+|||||||||+|+-+
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 489999999999999999999999999999999753
No 96
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.44 E-value=1.5e-07 Score=83.27 Aligned_cols=37 Identities=16% Similarity=-0.007 Sum_probs=34.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4699999999999999999999999999999998743
No 97
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1.5e-07 Score=82.79 Aligned_cols=36 Identities=11% Similarity=0.006 Sum_probs=33.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+|+|+|-.|.||+++.|+|++|||||||||+|+-+
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 589999999999999999999999999999999854
No 98
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.43 E-value=1.6e-07 Score=81.56 Aligned_cols=36 Identities=8% Similarity=0.022 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|+|-.|+||+.+.|+|++|||||||||+|+-
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 49 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINK 49 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 359999999999999999999999999999999974
No 99
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.43 E-value=1.7e-07 Score=77.66 Aligned_cols=36 Identities=22% Similarity=0.118 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+|+|+|-.|+||+.++|+|++|||||||||+|+-
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG 49 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999999999999999999874
No 100
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.43 E-value=1.5e-07 Score=83.82 Aligned_cols=37 Identities=11% Similarity=-0.091 Sum_probs=34.4
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
...+|+|||-.|++|||+.++|++|||||||||+|.=
T Consensus 16 ~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 3569999999999999999999999999999999864
No 101
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.43 E-value=1.7e-07 Score=80.01 Aligned_cols=36 Identities=8% Similarity=-0.039 Sum_probs=33.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus 15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (207)
T PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAG 50 (207)
T ss_pred eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999999999999999999874
No 102
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.43 E-value=1.6e-07 Score=80.34 Aligned_cols=36 Identities=6% Similarity=0.035 Sum_probs=34.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 49 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILG 49 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 469999999999999999999999999999999974
No 103
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.43 E-value=1.6e-07 Score=76.35 Aligned_cols=35 Identities=11% Similarity=-0.011 Sum_probs=33.1
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|..++||+.+.|+|++|||||||+++|+-
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 58999999999999999999999999999999863
No 104
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.43 E-value=1.7e-07 Score=79.19 Aligned_cols=36 Identities=11% Similarity=0.021 Sum_probs=33.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|-.|+||+++.|+||.|||||||||+|+=
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG 48 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999999999999999999863
No 105
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=1.7e-07 Score=80.97 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=33.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+|+|+|-.|+||++++|+|++|||||||||+|+-+
T Consensus 15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 489999999999999999999999999999999743
No 106
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.42 E-value=1.8e-07 Score=78.03 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=32.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.||+|+|-.++||+.+.|+|++|||||||||+|+
T Consensus 14 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (178)
T cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4899999999999999999999999999999986
No 107
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=1.7e-07 Score=81.43 Aligned_cols=37 Identities=11% Similarity=-0.008 Sum_probs=34.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3599999999999999999999999999999999753
No 108
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.42 E-value=1.6e-07 Score=81.71 Aligned_cols=36 Identities=17% Similarity=0.001 Sum_probs=33.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|..|+||+++.|+|++|||||||||+|+-+
T Consensus 15 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 489999999999999999999999999999999754
No 109
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=1.7e-07 Score=81.91 Aligned_cols=37 Identities=14% Similarity=-0.033 Sum_probs=34.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..||+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3589999999999999999999999999999998743
No 110
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.42 E-value=1.8e-07 Score=79.79 Aligned_cols=36 Identities=22% Similarity=0.088 Sum_probs=33.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|+||+.+.|+|++|||||||||+|+-+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 599999999999999999999999999999999743
No 111
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.42 E-value=1.8e-07 Score=81.75 Aligned_cols=36 Identities=19% Similarity=-0.153 Sum_probs=33.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|..|+||+.++|+|++|||||||||+|+-+
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 489999999999999999999999999999998743
No 112
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=1.8e-07 Score=81.32 Aligned_cols=35 Identities=14% Similarity=-0.037 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|+||+.+.|+|++|||||||||+|+=
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 59999999999999999999999999999999873
No 113
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=1.7e-07 Score=81.76 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=33.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+|+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 589999999999999999999999999999999743
No 114
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=1.9e-07 Score=81.49 Aligned_cols=37 Identities=8% Similarity=-0.076 Sum_probs=34.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.+|+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4589999999999999999999999999999999754
No 115
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.41 E-value=1.8e-07 Score=82.84 Aligned_cols=36 Identities=14% Similarity=0.012 Sum_probs=34.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+||++||-.+++||++.||||.|+|||||||+|+=
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~G 51 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG 51 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 679999999999999999999999999999999973
No 116
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=1.9e-07 Score=81.71 Aligned_cols=37 Identities=8% Similarity=-0.070 Sum_probs=34.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999999999999999999843
No 117
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=1.9e-07 Score=83.80 Aligned_cols=36 Identities=19% Similarity=-0.033 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|..|+||+.+.|+|++|||||||||+|+-
T Consensus 24 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 59 (289)
T PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNG 59 (289)
T ss_pred cceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999999999999999999974
No 118
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=1.8e-07 Score=82.91 Aligned_cols=36 Identities=11% Similarity=-0.086 Sum_probs=33.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+|+|+|-.|+||+++.|+||+|||||||||+|+-+
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 489999999999999999999999999999999743
No 119
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=1.8e-07 Score=81.64 Aligned_cols=36 Identities=3% Similarity=-0.123 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|+|..|+||+.+.|+|++|||||||||+|+=
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999999999999999999984
No 120
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.41 E-value=1.8e-07 Score=83.23 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|.||+++.|+||+|||||||||+|+=
T Consensus 21 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (272)
T PRK15056 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMG 55 (272)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999999999999999999974
No 121
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.41 E-value=4.3e-07 Score=81.69 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=34.0
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+|+|||-.|+||+.+.|+||+||||||||++|+=+
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 489999999999999999999999999999999855
No 122
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.41 E-value=1.8e-07 Score=79.51 Aligned_cols=36 Identities=17% Similarity=0.033 Sum_probs=33.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+|+|+|..++||+++.|+|++|||||||||+|+-+
T Consensus 14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 489999999999999999999999999999998754
No 123
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.41 E-value=2.1e-07 Score=77.26 Aligned_cols=37 Identities=16% Similarity=0.042 Sum_probs=34.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999999999999999999754
No 124
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.41 E-value=2e-07 Score=81.37 Aligned_cols=35 Identities=14% Similarity=-0.016 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999999999999999999973
No 125
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.40 E-value=2e-07 Score=80.94 Aligned_cols=37 Identities=11% Similarity=0.016 Sum_probs=34.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|||-.|.||||+-|.||+|||||||||.|+.-
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh
Confidence 5589999999999999999999999999999999853
No 126
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=2e-07 Score=81.48 Aligned_cols=37 Identities=8% Similarity=-0.138 Sum_probs=34.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.+|+|+|..|+||+.+.|+|++|||||||||+|+=+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4589999999999999999999999999999999854
No 127
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.40 E-value=2.1e-07 Score=79.88 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=34.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|..+++|+.++|+|++|||||||||+|+-
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G 53 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGG 53 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 569999999999999999999999999999999974
No 128
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=2e-07 Score=83.66 Aligned_cols=36 Identities=11% Similarity=-0.057 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|||..|+||+.+.|+|++|||||||||+|+-
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~G 55 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA 55 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 359999999999999999999999999999999974
No 129
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.40 E-value=1.9e-07 Score=82.87 Aligned_cols=36 Identities=8% Similarity=0.021 Sum_probs=33.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|||-.|+||+++.|+|++|||||||||+|+=
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGG 55 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 348999999999999999999999999999999974
No 130
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=2.1e-07 Score=81.96 Aligned_cols=36 Identities=8% Similarity=-0.093 Sum_probs=34.1
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 489999999999999999999999999999999864
No 131
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.40 E-value=2.1e-07 Score=80.28 Aligned_cols=37 Identities=8% Similarity=-0.074 Sum_probs=34.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|+|-.++||+++.|+|++|||||||||+|+-+
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3589999999999999999999999999999999743
No 132
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=2e-07 Score=82.05 Aligned_cols=35 Identities=17% Similarity=-0.047 Sum_probs=33.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|+||+++.|+|++|||||||||+|+-
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 48999999999999999999999999999999974
No 133
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.40 E-value=2.2e-07 Score=79.81 Aligned_cols=36 Identities=11% Similarity=-0.105 Sum_probs=33.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|+|-.|+||+.++|+|++|||||||||+|+-
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999999999999999999874
No 134
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.40 E-value=2.3e-07 Score=79.32 Aligned_cols=37 Identities=19% Similarity=0.048 Sum_probs=34.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.+|+|+|-.|+||+++.|+||+|||||||||+|+-+
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3589999999999999999999999999999999743
No 135
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=2.1e-07 Score=81.23 Aligned_cols=37 Identities=3% Similarity=-0.094 Sum_probs=34.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3589999999999999999999999999999999854
No 136
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.40 E-value=2.1e-07 Score=82.67 Aligned_cols=35 Identities=11% Similarity=0.028 Sum_probs=33.2
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|.||+++.|+||+|||||||||+|+=
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999999999999999999973
No 137
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=1.8e-07 Score=82.71 Aligned_cols=35 Identities=14% Similarity=-0.015 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 59 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGR 59 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 59999999999999999999999999999999873
No 138
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=2.3e-07 Score=81.00 Aligned_cols=37 Identities=11% Similarity=-0.002 Sum_probs=34.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3589999999999999999999999999999999753
No 139
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.39 E-value=2.1e-07 Score=83.30 Aligned_cols=35 Identities=20% Similarity=0.087 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|||-.|+||+++.|+||+|||||||||+|+-
T Consensus 15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG 49 (272)
T PRK13547 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG 49 (272)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999999999999999999974
No 140
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.39 E-value=2.3e-07 Score=82.53 Aligned_cols=38 Identities=16% Similarity=0.043 Sum_probs=34.8
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
...||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35699999999999999999999999999999998743
No 141
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=2.3e-07 Score=82.96 Aligned_cols=35 Identities=17% Similarity=-0.135 Sum_probs=33.2
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|||-.|+||+++.|+|++|||||||||+|+=
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDG 55 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 48999999999999999999999999999999874
No 142
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.39 E-value=2.4e-07 Score=79.55 Aligned_cols=36 Identities=25% Similarity=0.112 Sum_probs=33.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+|+|+|-.|+||+.+.|+||+|||||||||+|+=+
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 589999999999999999999999999999999743
No 143
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.39 E-value=2.1e-07 Score=81.18 Aligned_cols=36 Identities=11% Similarity=-0.023 Sum_probs=33.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|||-.|+||+.+.|+|++|||||||||+|+-+
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 489999999999999999999999999999998753
No 144
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=2.4e-07 Score=83.19 Aligned_cols=36 Identities=19% Similarity=-0.060 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|+|-.|+||+++.|+||+|||||||||+|+-
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~G 55 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNA 55 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 459999999999999999999999999999999974
No 145
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.38 E-value=2.5e-07 Score=80.07 Aligned_cols=36 Identities=19% Similarity=0.044 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQR 50 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999999999999999999973
No 146
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.38 E-value=2.4e-07 Score=83.78 Aligned_cols=36 Identities=11% Similarity=-0.098 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|||-.|+||+++.|+||+|||||||||+|+=
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~G 52 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLG 52 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999999999999999999974
No 147
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=2.5e-07 Score=80.84 Aligned_cols=37 Identities=8% Similarity=-0.086 Sum_probs=34.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|+|-.|+||+.+.|+|++|||||||||+|+=+
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3589999999999999999999999999999999854
No 148
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.38 E-value=2.5e-07 Score=82.04 Aligned_cols=37 Identities=11% Similarity=-0.049 Sum_probs=34.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..||+|+|-.|+||+.+.|+||+|||||||||+|+-+
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4599999999999999999999999999999998743
No 149
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.38 E-value=2.4e-07 Score=81.60 Aligned_cols=37 Identities=19% Similarity=0.105 Sum_probs=34.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..||+|+|-.|+||++++|+|++|||||||||+|+=+
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 3589999999999999999999999999999999754
No 150
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=2.4e-07 Score=82.25 Aligned_cols=36 Identities=11% Similarity=-0.157 Sum_probs=33.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|+|-.|.||+++.|+|++|||||||||+|+-
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 358999999999999999999999999999999874
No 151
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.38 E-value=2.6e-07 Score=81.17 Aligned_cols=36 Identities=14% Similarity=-0.103 Sum_probs=33.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|+||+.+.|+|++|||||||||+|+-+
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 489999999999999999999999999999999754
No 152
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.37 E-value=2.8e-07 Score=78.26 Aligned_cols=36 Identities=22% Similarity=0.049 Sum_probs=33.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+|+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 589999999999999999999999999999999743
No 153
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.37 E-value=2.6e-07 Score=81.57 Aligned_cols=36 Identities=22% Similarity=0.110 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 50 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSG 50 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999999999999999999974
No 154
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=2.6e-07 Score=81.13 Aligned_cols=37 Identities=19% Similarity=0.068 Sum_probs=34.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..||+|+|..|+||+.+.|+|++|||||||||+|+=+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3599999999999999999999999999999999743
No 155
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.37 E-value=2.7e-07 Score=80.57 Aligned_cols=35 Identities=9% Similarity=-0.090 Sum_probs=33.1
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 48999999999999999999999999999999873
No 156
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.37 E-value=2.6e-07 Score=81.58 Aligned_cols=35 Identities=23% Similarity=0.131 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|+||+.+.|+|++|||||||||+|+=
T Consensus 18 ~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~G 52 (251)
T PRK09544 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG 52 (251)
T ss_pred eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999999999999999999874
No 157
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.37 E-value=2.7e-07 Score=80.51 Aligned_cols=36 Identities=17% Similarity=-0.009 Sum_probs=33.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+|+|+|-.|.||+++.|+|++|||||||||+|+=+
T Consensus 17 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 489999999999999999999999999999999843
No 158
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.37 E-value=2.8e-07 Score=82.42 Aligned_cols=36 Identities=17% Similarity=-0.034 Sum_probs=33.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|-.|+||+++.|+|++|||||||||+|+=
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~G 69 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNR 69 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 459999999999999999999999999999999974
No 159
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=2.9e-07 Score=82.16 Aligned_cols=35 Identities=11% Similarity=-0.160 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|||..|+||+++.|+|++|||||||||+|+=
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNG 50 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 48999999999999999999999999999999974
No 160
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.37 E-value=2.7e-07 Score=79.15 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=36.1
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
...||+++|-.++|||-.++-||+|||||||||.++.|.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 356999999999999999999999999999999998863
No 161
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=2.8e-07 Score=83.01 Aligned_cols=36 Identities=19% Similarity=-0.098 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|||..|+||+.+.|+|++|||||||||+|.-
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNG 55 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 358999999999999999999999999999999864
No 162
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.36 E-value=2.9e-07 Score=78.87 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|+||+.+.|+|++|||||||||+|+-
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 58999999999999999999999999999999974
No 163
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=2.8e-07 Score=82.15 Aligned_cols=35 Identities=9% Similarity=-0.138 Sum_probs=33.1
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|||..|+||+++.|+|++|||||||||+|+=
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~G 50 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG 50 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 48999999999999999999999999999999863
No 164
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.36 E-value=2.9e-07 Score=81.14 Aligned_cols=37 Identities=14% Similarity=-0.078 Sum_probs=34.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..||+|+|-.|+||+.++|+|++|||||||||+|+-+
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3589999999999999999999999999999999743
No 165
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.36 E-value=8.9e-07 Score=78.97 Aligned_cols=39 Identities=10% Similarity=-0.121 Sum_probs=36.4
Q ss_pred ccccccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 180 LEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 180 kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.....+|+|||-.+.+|+-+.++|++|||||||||.|+
T Consensus 36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlklia 74 (249)
T COG1134 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIA 74 (249)
T ss_pred CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHh
Confidence 456688999999999999999999999999999999986
No 166
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=5.4e-07 Score=82.78 Aligned_cols=37 Identities=16% Similarity=-0.047 Sum_probs=34.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|||-.|++|+++.|+|++|||||||+|+|.=+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 4699999999999999999999999999999998643
No 167
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=3.1e-07 Score=81.39 Aligned_cols=37 Identities=5% Similarity=-0.131 Sum_probs=34.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|+|-.|+||+.+.|+|++|||||||||+|+=+
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRM 57 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 5699999999999999999999999999999999643
No 168
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.35 E-value=2.9e-07 Score=86.06 Aligned_cols=36 Identities=8% Similarity=0.004 Sum_probs=34.0
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
...+|+|+|-.|+|||.+-+|||+||||||+||+|+
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHh
Confidence 356899999999999999999999999999999997
No 169
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.35 E-value=3.1e-07 Score=81.70 Aligned_cols=36 Identities=8% Similarity=-0.094 Sum_probs=33.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999999999999999999743
No 170
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=6.9e-07 Score=82.05 Aligned_cols=37 Identities=14% Similarity=0.018 Sum_probs=34.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|||-.|++|+++.|+|++|||||||+|+|.-+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 4589999999999999999999999999999998743
No 171
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=3e-07 Score=82.61 Aligned_cols=36 Identities=17% Similarity=-0.115 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+|+|||..|+||+.+.|+|++|||||||||+|+=
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~G 55 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG 55 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 358999999999999999999999999999999974
No 172
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.35 E-value=3.3e-07 Score=79.76 Aligned_cols=35 Identities=11% Similarity=-0.030 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+||+|+|-.|+||+.+.|+|++|||||||||+|+-
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 48 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG 48 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 59999999999999999999999999999999973
No 173
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.35 E-value=3.4e-07 Score=79.33 Aligned_cols=35 Identities=14% Similarity=-0.066 Sum_probs=33.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|+||+.+.|+|++|||||||||+|+-
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g 48 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG 48 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 59999999999999999999999999999999974
No 174
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=3.3e-07 Score=80.12 Aligned_cols=36 Identities=6% Similarity=-0.027 Sum_probs=33.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|.||+.+.|+||+|||||||||+|+=+
T Consensus 18 ~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 489999999999999999999999999999999743
No 175
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.35 E-value=3.6e-07 Score=77.62 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=33.1
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|+|-.|+||+.+.|+|++|||||||||+|+=
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999999999999999999863
No 176
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.35 E-value=8.2e-07 Score=80.75 Aligned_cols=36 Identities=8% Similarity=-0.115 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|||-.|+||+++.++||.|||||||+|+|+=
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~G 55 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG 55 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 459999999999999999999999999999999863
No 177
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.35 E-value=3.6e-07 Score=81.15 Aligned_cols=37 Identities=24% Similarity=0.074 Sum_probs=34.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|+|-.|+||+.+.|+|++|||||||||+|+-+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4699999999999999999999999999999998743
No 178
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.35 E-value=2.8e-07 Score=81.52 Aligned_cols=36 Identities=6% Similarity=-0.066 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSR 55 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 359999999999999999999999999999999874
No 179
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=3.5e-07 Score=80.90 Aligned_cols=35 Identities=14% Similarity=-0.043 Sum_probs=33.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|||..|.||+++.|+|++|||||||||+|+
T Consensus 23 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~ia 57 (257)
T PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLN 57 (257)
T ss_pred ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45899999999999999999999999999999987
No 180
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=3.5e-07 Score=81.94 Aligned_cols=36 Identities=14% Similarity=-0.172 Sum_probs=33.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+|+|+|-.|++|+++.|+|++|||||||||+|+-
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G 55 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNG 55 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 348999999999999999999999999999999874
No 181
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.33 E-value=3.7e-07 Score=81.22 Aligned_cols=37 Identities=8% Similarity=-0.102 Sum_probs=34.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus 37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3589999999999999999999999999999999854
No 182
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.33 E-value=3.8e-07 Score=80.78 Aligned_cols=36 Identities=6% Similarity=-0.153 Sum_probs=33.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|||-.|+||+.+.|+|++|||||||||+|+-+
T Consensus 24 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 589999999999999999999999999999999843
No 183
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=7.6e-07 Score=79.10 Aligned_cols=35 Identities=17% Similarity=0.039 Sum_probs=33.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.||++||-.|++||+-.++||.|||||||.++|.
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~ 51 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIM 51 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 57999999999999999999999999999999985
No 184
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.33 E-value=3.7e-07 Score=81.45 Aligned_cols=35 Identities=14% Similarity=-0.122 Sum_probs=33.2
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|+|..|+||+.+.|+|++|||||||||+|+=
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG 53 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 48999999999999999999999999999999973
No 185
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.33 E-value=4.1e-07 Score=82.28 Aligned_cols=36 Identities=14% Similarity=-0.092 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|+|-.|+||+++.|+||+|||||||||+|.-
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999999999999999999874
No 186
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=4.1e-07 Score=80.42 Aligned_cols=35 Identities=6% Similarity=-0.060 Sum_probs=33.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++|+|+|-.|+||+++.|+|++|||||||||+|+-
T Consensus 30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 64 (265)
T PRK14252 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNR 64 (265)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999999999999999999974
No 187
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=4.1e-07 Score=81.30 Aligned_cols=36 Identities=11% Similarity=-0.125 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+|+|||..|+||+++.|+|++|||||||||+|+=
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 58 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNA 58 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999999999999999999973
No 188
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.31 E-value=3.7e-07 Score=80.63 Aligned_cols=35 Identities=9% Similarity=-0.083 Sum_probs=33.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+++|+|||.-|.++.+|.++||+|||||||||+|=
T Consensus 20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred hhhhccCceeccCCceEEEECCCCcCHHHHHHHHH
Confidence 56899999999999999999999999999999974
No 189
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.31 E-value=5e-07 Score=73.53 Aligned_cols=35 Identities=17% Similarity=0.031 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|++-.|.||++++|+|++|||||||||+|+-
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g 47 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 59999999999999999999999999999999864
No 190
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=4.4e-07 Score=83.86 Aligned_cols=37 Identities=22% Similarity=0.115 Sum_probs=34.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.+|+|+|-.|+||+++.|+||+|||||||||+|+-+
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4699999999999999999999999999999998743
No 191
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.31 E-value=4.5e-07 Score=81.50 Aligned_cols=37 Identities=11% Similarity=-0.068 Sum_probs=34.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..||+|+|-.|+||+.+.|+|++|||||||||+|+-+
T Consensus 52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3589999999999999999999999999999999843
No 192
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.30 E-value=9.1e-07 Score=81.46 Aligned_cols=37 Identities=14% Similarity=-0.059 Sum_probs=34.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|||-.|++|+.+.|+|++|||||||+|+|+-+
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl 65 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL 65 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 4589999999999999999999999999999999743
No 193
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.30 E-value=4.9e-07 Score=80.71 Aligned_cols=36 Identities=6% Similarity=0.004 Sum_probs=34.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|+|-.|.+||.+-|+||+|||||||||+|+=
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 568999999999999999999999999999999873
No 194
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.30 E-value=3.3e-07 Score=81.43 Aligned_cols=35 Identities=14% Similarity=0.004 Sum_probs=32.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+|+|+| .++||+++.|+||+|||||||||+|+-+
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999 7999999999999999999999999743
No 195
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=4.9e-07 Score=81.29 Aligned_cols=35 Identities=20% Similarity=-0.081 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|||..|.+|+.+.|+|++|||||||||+|+=
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~G 54 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNG 54 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence 59999999999999999999999999999999974
No 196
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=5.3e-07 Score=79.64 Aligned_cols=36 Identities=17% Similarity=-0.009 Sum_probs=33.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|+||+++.|+|++|||||||||+|+=+
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM 56 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 489999999999999999999999999999999854
No 197
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=5.3e-07 Score=80.83 Aligned_cols=36 Identities=19% Similarity=0.032 Sum_probs=33.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+|+|||-.|+||+++.|+|++|||||||||+|+-+
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 489999999999999999999999999999999744
No 198
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.29 E-value=5.4e-07 Score=79.21 Aligned_cols=37 Identities=16% Similarity=0.012 Sum_probs=34.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|+|-.|+||+.+.|+|++|||||||||+|+-+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3599999999999999999999999999999998743
No 199
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.28 E-value=5.8e-07 Score=80.22 Aligned_cols=35 Identities=14% Similarity=-0.095 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|||..|.||+.+.|+|++|||||||+|+|+-
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G 52 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG 52 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 48999999999999999999999999999999974
No 200
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.28 E-value=5.7e-07 Score=83.73 Aligned_cols=36 Identities=3% Similarity=-0.070 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+|+|+|-.|++|+++.|+||+|||||||||+|+-
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaG 52 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG 52 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHC
Confidence 458999999999999999999999999999999974
No 201
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=6.1e-07 Score=81.40 Aligned_cols=36 Identities=17% Similarity=-0.048 Sum_probs=33.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|+||+++.|+|++|||||||||+|+-+
T Consensus 59 ~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 59 HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 489999999999999999999999999999999743
No 202
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.27 E-value=6e-07 Score=83.48 Aligned_cols=36 Identities=11% Similarity=-0.012 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+|+|+|..|+||+++.|+||+|||||||||+|+=
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaG 52 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG 52 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 458999999999999999999999999999999974
No 203
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=6.6e-07 Score=81.49 Aligned_cols=37 Identities=19% Similarity=0.033 Sum_probs=34.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|||..|+||+.+.|+|++|||||||||+|.=+
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3589999999999999999999999999999999743
No 204
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.27 E-value=7.9e-07 Score=70.11 Aligned_cols=34 Identities=12% Similarity=-0.151 Sum_probs=31.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..|++++-.+++|+.++++||+||||||||+++.
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 4799999999999999999999999999999964
No 205
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.26 E-value=6.5e-07 Score=82.10 Aligned_cols=36 Identities=8% Similarity=-0.087 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|||..|+||+.+.|+|++|||||||||+|+=
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~G 74 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG 74 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999999999999999999874
No 206
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=7.4e-07 Score=79.82 Aligned_cols=36 Identities=17% Similarity=-0.053 Sum_probs=33.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+|+|||..|.||+++.|+|++|||||||||+|+=+
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~ 56 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL 56 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcc
Confidence 489999999999999999999999999999998743
No 207
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=7.4e-07 Score=79.54 Aligned_cols=37 Identities=19% Similarity=-0.066 Sum_probs=34.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|+|-.|+||+.+.|+|++||||||||++|+-+
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3589999999999999999999999999999998743
No 208
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.24 E-value=8.2e-07 Score=74.96 Aligned_cols=34 Identities=6% Similarity=0.085 Sum_probs=30.8
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
++ ++|-.|+||+++.|+|++|||||||||+|+=+
T Consensus 16 l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 16 LF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45 49999999999999999999999999999743
No 209
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.24 E-value=7.8e-07 Score=83.10 Aligned_cols=36 Identities=6% Similarity=-0.065 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+|+|+|-.|++|+++.|+||+|||||||||+|+-
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaG 51 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 358999999999999999999999999999999974
No 210
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.24 E-value=7.9e-07 Score=83.48 Aligned_cols=36 Identities=6% Similarity=-0.041 Sum_probs=33.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+++|+|+|-.|++|+++.|+||+|||||||||+|+=
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaG 62 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG 62 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence 348999999999999999999999999999999974
No 211
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.24 E-value=7.1e-07 Score=84.63 Aligned_cols=36 Identities=11% Similarity=-0.025 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|+|-.|+||+++.++||+|||||||||+|+=
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaG 51 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING 51 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence 459999999999999999999999999999999974
No 212
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.22 E-value=8.6e-07 Score=82.33 Aligned_cols=37 Identities=22% Similarity=0.108 Sum_probs=34.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|||-.|+||+++.|+|++|||||||||+|.-+
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4699999999999999999999999999999999753
No 213
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.21 E-value=9.1e-07 Score=82.66 Aligned_cols=36 Identities=8% Similarity=-0.033 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|+|-.|.+|+++.|+||+|||||||||+|+-
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 53 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999999999999999999974
No 214
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.21 E-value=9.3e-07 Score=82.23 Aligned_cols=36 Identities=8% Similarity=0.017 Sum_probs=33.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|+|-.|+||+.+.|+||+|||||||||+|+=
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG 54 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHC
Confidence 358999999999999999999999999999999863
No 215
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=9.9e-07 Score=81.27 Aligned_cols=36 Identities=14% Similarity=-0.025 Sum_probs=33.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+|+|+|-.|+||+.+.|+||+||||||||++|+-+
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~ 131 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQL 131 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 489999999999999999999999999999999743
No 216
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.20 E-value=1e-06 Score=82.00 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+++|+|+|-.|++|+.+.|+||+|||||||||+|+-
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG 50 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG 50 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999999999999999999974
No 217
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.20 E-value=9.7e-07 Score=84.98 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=34.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|||..|++|+++.|+||.|||||||||+|+=+
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 54 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI 54 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3599999999999999999999999999999998743
No 218
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.19 E-value=1e-06 Score=84.28 Aligned_cols=36 Identities=14% Similarity=-0.177 Sum_probs=33.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|-.|.||+.+.|+||.|||||||||+|+-+
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~ 52 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE 52 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 499999999999999999999999999999999754
No 219
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.19 E-value=1.2e-06 Score=84.29 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|||-.|++|+.+.|+||.|||||||||+|+-
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG 53 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence 359999999999999999999999999999999974
No 220
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.19 E-value=1.2e-06 Score=81.10 Aligned_cols=36 Identities=8% Similarity=-0.095 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+|+|||-.|.||+++.|+||.|||||||||+|.=
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~G 89 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILG 89 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 458999999999999999999999999999999864
No 221
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.17 E-value=1.3e-06 Score=82.11 Aligned_cols=37 Identities=11% Similarity=-0.024 Sum_probs=34.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|+|-.|++|+++.|+||+|||||||||+|+-+
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 68 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF 68 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3589999999999999999999999999999999743
No 222
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.16 E-value=1.4e-06 Score=77.23 Aligned_cols=37 Identities=19% Similarity=-0.023 Sum_probs=34.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|+|-.|++|+.++++|++|||||||+|.|.-+
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL 53 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL 53 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc
Confidence 5689999999999999999999999999999998754
No 223
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.16 E-value=1.4e-06 Score=84.18 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|+|-.|++|+++.|+||.|||||||||+|+=
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G 59 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG 59 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 359999999999999999999999999999999974
No 224
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.16 E-value=1.4e-06 Score=83.73 Aligned_cols=37 Identities=16% Similarity=0.039 Sum_probs=34.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|+|-.|.+|+++.|+||.|||||||||+|+-+
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 53 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI 53 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3589999999999999999999999999999999743
No 225
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.16 E-value=2.7e-06 Score=84.71 Aligned_cols=36 Identities=11% Similarity=0.007 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|||-.|.||+.+.|+||.|||||||||+|+=
T Consensus 14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G 49 (638)
T PRK10636 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKN 49 (638)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999999999999999999974
No 226
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.15 E-value=1.4e-06 Score=84.07 Aligned_cols=37 Identities=11% Similarity=-0.006 Sum_probs=34.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|+|-.|++|+++.|+||+|||||||||+|+-+
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl 333 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV 333 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4699999999999999999999999999999999743
No 227
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.15 E-value=1.6e-06 Score=79.98 Aligned_cols=36 Identities=8% Similarity=-0.121 Sum_probs=33.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|||-.|++|+++.|+|++|||||||+|+|+-
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~G 69 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIG 69 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 569999999999999999999999999999999874
No 228
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.15 E-value=5.2e-06 Score=80.86 Aligned_cols=36 Identities=8% Similarity=-0.060 Sum_probs=33.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|-.|+||+.++|.|+.|||||||+|.|.=
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~g 391 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTR 391 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 359999999999999999999999999999999863
No 229
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.15 E-value=1.6e-06 Score=79.77 Aligned_cols=36 Identities=17% Similarity=0.052 Sum_probs=33.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|||-.|++|+++.|+|++|||||||+|+|.-
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~g 63 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTM 63 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHc
Confidence 469999999999999999999999999999999864
No 230
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.15 E-value=2.7e-06 Score=83.35 Aligned_cols=34 Identities=21% Similarity=0.043 Sum_probs=32.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.||+|+|-.|+||+.++|.||+|||||||+|.|.
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~ 387 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT 387 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 5899999999999999999999999999999985
No 231
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.15 E-value=1.5e-06 Score=84.79 Aligned_cols=37 Identities=16% Similarity=0.054 Sum_probs=34.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|||-.|.||+++.|+||.|||||||||+|+-+
T Consensus 20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~ 56 (556)
T PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV 56 (556)
T ss_pred CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4589999999999999999999999999999999743
No 232
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.14 E-value=1.6e-06 Score=83.15 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|||-.|++|+++.|+||.|||||||||+|+=
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G 49 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG 49 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 359999999999999999999999999999999974
No 233
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.14 E-value=1.7e-06 Score=83.83 Aligned_cols=37 Identities=16% Similarity=-0.029 Sum_probs=34.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|||-.|++|+++.|+||.|||||||||+|+-+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 335 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL 335 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4699999999999999999999999999999999743
No 234
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.14 E-value=3e-06 Score=81.64 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=32.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.||+|+|-.|+||+.++|.|++|||||||+|.|.
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~ 369 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLL 369 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 5899999999999999999999999999999985
No 235
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.14 E-value=1.6e-06 Score=83.35 Aligned_cols=36 Identities=14% Similarity=-0.024 Sum_probs=33.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.||+|+|..|+||+++.|+|+.|||||||||+|+=+
T Consensus 18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 53 (501)
T PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGN 53 (501)
T ss_pred EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 599999999999999999999999999999999743
No 236
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.13 E-value=1.7e-06 Score=84.28 Aligned_cols=36 Identities=17% Similarity=0.040 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|+|..|.+|+++.|+||.|||||||||+|+=
T Consensus 18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G 53 (552)
T TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG 53 (552)
T ss_pred CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 359999999999999999999999999999999974
No 237
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.13 E-value=1.8e-06 Score=83.61 Aligned_cols=35 Identities=9% Similarity=-0.129 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|+|-.|+||+.+.|+||.|||||||||+|+=
T Consensus 15 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G 49 (530)
T PRK15064 15 PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGG 49 (530)
T ss_pred EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 59999999999999999999999999999999973
No 238
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=5e-06 Score=81.36 Aligned_cols=36 Identities=14% Similarity=0.020 Sum_probs=34.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++||++||+.|..|+-+.+.|+|||||||+||+||=
T Consensus 365 ~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH
Confidence 459999999999999999999999999999999974
No 239
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.12 E-value=1.7e-06 Score=82.89 Aligned_cols=36 Identities=14% Similarity=-0.015 Sum_probs=34.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|+|-.|+||+++.|+||.|||||||||+|+=
T Consensus 273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G 308 (490)
T PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 459999999999999999999999999999999974
No 240
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.12 E-value=1.9e-06 Score=80.12 Aligned_cols=34 Identities=9% Similarity=-0.020 Sum_probs=32.8
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+|+|+|-.|++||...+|||+|||||||||+|+=
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 8999999999999999999999999999999974
No 241
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.12 E-value=1.9e-06 Score=82.70 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=33.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..||+|+|-.|++|+++.|+||.|||||||||+|+
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~ 307 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALF 307 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHh
Confidence 45999999999999999999999999999999997
No 242
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.12 E-value=1.8e-06 Score=81.44 Aligned_cols=38 Identities=8% Similarity=-0.066 Sum_probs=34.9
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
....+|+|+|-.|+||+++.|+|++|||||||||+|.=
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~G 72 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNG 72 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 34668999999999999999999999999999999864
No 243
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.12 E-value=2e-06 Score=79.29 Aligned_cols=37 Identities=11% Similarity=0.010 Sum_probs=33.9
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
....++||+-.|+.||++.||||+||||||+|++|+=
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhC
Confidence 3557889999999999999999999999999999974
No 244
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.12 E-value=2e-06 Score=83.33 Aligned_cols=37 Identities=14% Similarity=-0.063 Sum_probs=34.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.+|+|+|-.|.+|+++.|+||.|||||||||+|+-+
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~ 58 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRL 58 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4599999999999999999999999999999999754
No 245
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.11 E-value=2.5e-06 Score=73.50 Aligned_cols=40 Identities=20% Similarity=0.112 Sum_probs=36.5
Q ss_pred CccccccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 179 SLEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 179 ~kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
....+.+||++|+-+|+|||-+.+.||+||||||||-+|+
T Consensus 18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlA 57 (228)
T COG4181 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLA 57 (228)
T ss_pred CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHh
Confidence 4456789999999999999999999999999999998876
No 246
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.11 E-value=3.8e-06 Score=83.65 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=33.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|+|-.|+||+.+.|.|++|||||||+|.|.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~ 500 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLL 500 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 35899999999999999999999999999999985
No 247
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.11 E-value=2.1e-06 Score=76.78 Aligned_cols=37 Identities=11% Similarity=-0.059 Sum_probs=34.4
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+.||+|++-.|++||.+.|+|++|||||||||+|.-
T Consensus 20 ~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~G 56 (263)
T COG1127 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILG 56 (263)
T ss_pred CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhc
Confidence 4679999999999999999999999999999999864
No 248
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.10 E-value=2e-06 Score=72.87 Aligned_cols=35 Identities=17% Similarity=0.066 Sum_probs=31.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+|+|+ -.|+||+++.|+||.|||||||||+|+=
T Consensus 13 ~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 13 FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 4578885 6999999999999999999999999863
No 249
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.09 E-value=2.4e-06 Score=82.50 Aligned_cols=37 Identities=16% Similarity=-0.006 Sum_probs=34.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|+|-.|.+|+++.|+||.|||||||||+|+-+
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3589999999999999999999999999999999865
No 250
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.09 E-value=2.4e-06 Score=82.29 Aligned_cols=36 Identities=25% Similarity=0.167 Sum_probs=33.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+|+|||-.|++|+++.|+|+.|||||||||+|+=
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 310 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG 310 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhC
Confidence 459999999999999999999999999999999973
No 251
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.08 E-value=2.5e-06 Score=82.60 Aligned_cols=36 Identities=8% Similarity=-0.024 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|+|-.|++|+++.|+||+|||||||||+|+=
T Consensus 332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G 367 (530)
T PRK15064 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG 367 (530)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999999999999999999873
No 252
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.08 E-value=2.5e-06 Score=82.24 Aligned_cols=34 Identities=21% Similarity=0.047 Sum_probs=32.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.||+|+|-.|+||+.+++.||+|||||||+|.|.
T Consensus 349 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3899999999999999999999999999999885
No 253
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.08 E-value=5.3e-06 Score=80.81 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=33.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|+|-.|+||+.+.+.||+||||||++|.|.
T Consensus 342 ~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~ 376 (567)
T COG1132 342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLL 376 (567)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999999999999999999885
No 254
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.07 E-value=2.4e-06 Score=84.85 Aligned_cols=36 Identities=6% Similarity=-0.129 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|||..|.||+.+.|+||.|||||||||+|+=
T Consensus 16 ~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG 51 (635)
T PRK11147 16 APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNG 51 (635)
T ss_pred ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 459999999999999999999999999999999864
No 255
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.07 E-value=2.6e-06 Score=74.76 Aligned_cols=36 Identities=11% Similarity=-0.001 Sum_probs=33.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|||-.|+||+.+.||||+||||||+|+.++=
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhc
Confidence 669999999999999999999999999999999873
No 256
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.07 E-value=2.6e-06 Score=84.76 Aligned_cols=36 Identities=19% Similarity=-0.050 Sum_probs=33.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|||..|+||+++.|+||.|||||||||+|+=
T Consensus 325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 360 (638)
T PRK10636 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG 360 (638)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 469999999999999999999999999999999974
No 257
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.06 E-value=2.8e-06 Score=81.81 Aligned_cols=35 Identities=14% Similarity=0.015 Sum_probs=33.2
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|+|-.|++|+++.|+||.|||||||||+|+-
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 311 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFG 311 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 48999999999999999999999999999999973
No 258
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.06 E-value=2.7e-06 Score=82.96 Aligned_cols=36 Identities=14% Similarity=0.037 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|||-.|++|+++.|+||.|||||||||+|+-
T Consensus 335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G 370 (552)
T TIGR03719 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370 (552)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 469999999999999999999999999999999863
No 259
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.05 E-value=7.3e-06 Score=79.96 Aligned_cols=35 Identities=6% Similarity=-0.099 Sum_probs=33.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..||+|+|-.|+||+.+.+.||+|||||||+|.|.
T Consensus 355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~ 389 (555)
T TIGR01194 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC 389 (555)
T ss_pred CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 35899999999999999999999999999999985
No 260
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=2.8e-06 Score=80.54 Aligned_cols=36 Identities=11% Similarity=-0.051 Sum_probs=33.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
...|+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~G 76 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNR 76 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 347999999999999999999999999999999874
No 261
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.04 E-value=3.2e-06 Score=82.59 Aligned_cols=36 Identities=14% Similarity=0.028 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+|+|||-.|+||+++.|+|+.|||||||||+|+-
T Consensus 337 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 372 (556)
T PRK11819 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITG 372 (556)
T ss_pred eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999999999999999999973
No 262
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.03 E-value=3.9e-06 Score=75.93 Aligned_cols=36 Identities=6% Similarity=-0.022 Sum_probs=33.7
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+.+++|||-.|.+||++.++||+||||||+||.|=
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMIN 48 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMIN 48 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHh
Confidence 467999999999999999999999999999999874
No 263
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.02 E-value=4.6e-06 Score=74.52 Aligned_cols=38 Identities=18% Similarity=-0.034 Sum_probs=34.8
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
...+|+|||-.|.+||...++|++|||||||.++|+-+
T Consensus 19 ~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 19 AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 34799999999999999999999999999999998743
No 264
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.02 E-value=3.7e-06 Score=80.87 Aligned_cols=35 Identities=23% Similarity=0.154 Sum_probs=32.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|+|-.|+||+++.|+||+|||||||||+|+=
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G 300 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYG 300 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhC
Confidence 47999999999999999999999999999999873
No 265
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.01 E-value=3.7e-06 Score=83.45 Aligned_cols=36 Identities=6% Similarity=-0.024 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++||+|||-.|+||+++.|+||.|||||||||+|+=
T Consensus 332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 367 (635)
T PRK11147 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLG 367 (635)
T ss_pred eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 469999999999999999999999999999999973
No 266
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.01 E-value=8e-06 Score=81.48 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=32.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+|+|+|-.|+||+.+.+.|++|||||||+|.|+
T Consensus 479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~ 512 (694)
T TIGR03375 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLL 512 (694)
T ss_pred cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 5899999999999999999999999999999986
No 267
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.01 E-value=4e-06 Score=82.32 Aligned_cols=37 Identities=14% Similarity=-0.078 Sum_probs=34.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|+|..|+||+++.|+|++|||||||||+|+=+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4699999999999999999999999999999998743
No 268
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.00 E-value=4.1e-06 Score=80.59 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=32.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+|+|+|-.|+||+++.|+||.|||||||||+|.
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~ 300 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLY 300 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHc
Confidence 4899999999999999999999999999999986
No 269
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.00 E-value=4.1e-06 Score=81.72 Aligned_cols=34 Identities=9% Similarity=-0.022 Sum_probs=32.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.||+|+|-.|+||+.++|.|++|||||||+|.|.
T Consensus 364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~ 397 (588)
T PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALL 397 (588)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4899999999999999999999999999999884
No 270
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.00 E-value=4.5e-06 Score=81.09 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=33.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..||+|+|-.|+||+.++|.|++|||||||+|.|.
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~ 387 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLL 387 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 35899999999999999999999999999999985
No 271
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.00 E-value=4.1e-06 Score=83.08 Aligned_cols=37 Identities=16% Similarity=-0.071 Sum_probs=34.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|||-.|++|+++.|+|++|||||||||+|+-+
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl 65 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL 65 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 4599999999999999999999999999999999754
No 272
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.99 E-value=4.5e-06 Score=82.76 Aligned_cols=36 Identities=17% Similarity=-0.028 Sum_probs=34.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|||-.|++|+++.|+|++|||||||||+|+=
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~G 372 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR 372 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 469999999999999999999999999999999974
No 273
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.99 E-value=8.5e-06 Score=82.39 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=32.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+|+|+|-.|+|||.+.+.|++|||||||+|.|.
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~ 520 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLL 520 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHh
Confidence 5899999999999999999999999999999874
No 274
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.99 E-value=5.4e-06 Score=72.88 Aligned_cols=39 Identities=13% Similarity=0.036 Sum_probs=35.3
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
+.+.++|||..++.|++|.|||+.||||||+||+|+-+.
T Consensus 14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL 52 (245)
T COG4555 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL 52 (245)
T ss_pred HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc
Confidence 344789999999999999999999999999999998653
No 275
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.98 E-value=4.8e-06 Score=79.83 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=32.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+|+|||-.|++|+++.|+|+.|||||||||+|+
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 295 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLF 295 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHc
Confidence 5899999999999999999999999999999997
No 276
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.97 E-value=5.1e-06 Score=80.77 Aligned_cols=34 Identities=9% Similarity=-0.116 Sum_probs=32.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+|+|+|-.|+||+.++|.||+|||||||+|.|.
T Consensus 337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~ 370 (547)
T PRK10522 337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370 (547)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4899999999999999999999999999999986
No 277
>PLN03073 ABC transporter F family; Provisional
Probab=97.97 E-value=8.4e-06 Score=82.48 Aligned_cols=35 Identities=9% Similarity=-0.139 Sum_probs=33.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..||+|+|-.|.+|+.+.|+||.|||||||||.|+
T Consensus 190 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~ 224 (718)
T PLN03073 190 RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMA 224 (718)
T ss_pred CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 34999999999999999999999999999999996
No 278
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.96 E-value=5.8e-06 Score=83.04 Aligned_cols=35 Identities=20% Similarity=0.111 Sum_probs=33.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..||+|+|-.|+||+.++|.||+|||||||+|.|.
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~ 528 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ 528 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 45899999999999999999999999999999986
No 279
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.95 E-value=6.1e-06 Score=82.52 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=32.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.||+|+|-.|+||+.+.|.|++|||||||+|.|.
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~ 521 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLV 521 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 5899999999999999999999999999999985
No 280
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.94 E-value=6.2e-06 Score=82.39 Aligned_cols=35 Identities=11% Similarity=-0.014 Sum_probs=33.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..||+|+|-.|+||+.+.|.|++|||||||+|.|.
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~ 526 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVA 526 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35899999999999999999999999999999986
No 281
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.94 E-value=6.3e-06 Score=79.62 Aligned_cols=35 Identities=9% Similarity=0.016 Sum_probs=32.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|||-.|++|+++.|+||.|||||||||+|+=
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 311 (510)
T PRK15439 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYG 311 (510)
T ss_pred CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 37999999999999999999999999999999973
No 282
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.93 E-value=2.9e-06 Score=75.72 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=33.6
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
-...|+|||-.++|||++.|.||.|||||||+++|.
T Consensus 16 Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlit 51 (250)
T COG0411 16 GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLIT 51 (250)
T ss_pred CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeec
Confidence 367899999999999999999999999999999875
No 283
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.93 E-value=6.7e-06 Score=80.36 Aligned_cols=35 Identities=20% Similarity=0.044 Sum_probs=33.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|+|-.|+||+.+.|.||+|||||||+|.|.
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~ 362 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQ 362 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 35899999999999999999999999999999986
No 284
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.93 E-value=7.2e-06 Score=79.59 Aligned_cols=35 Identities=11% Similarity=-0.066 Sum_probs=33.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.++|+|+|-.++||+.+.|.|++|||||||+|.|+
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~ 365 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIV 365 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35899999999999999999999999999999986
No 285
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.93 E-value=6.9e-06 Score=80.33 Aligned_cols=34 Identities=21% Similarity=0.002 Sum_probs=32.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.||+|+|-.++||+.++|.|++|||||||+|.|.
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~ 382 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQ 382 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4899999999999999999999999999999985
No 286
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.92 E-value=1.8e-05 Score=77.12 Aligned_cols=36 Identities=19% Similarity=0.009 Sum_probs=33.5
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
++.||+|+|..+.||+-+.|+||+|||||||.|.|.
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHH
Confidence 367999999999999999999999999999999864
No 287
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.92 E-value=7.5e-06 Score=79.35 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=32.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.||+|+|-.|+||+.++|.|++|||||||+|.|.
T Consensus 346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~ 379 (571)
T TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIP 379 (571)
T ss_pred ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 5899999999999999999999999999999986
No 288
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.91 E-value=7.7e-06 Score=79.98 Aligned_cols=34 Identities=9% Similarity=-0.087 Sum_probs=32.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.||+|+|-.|+||+.++|.|++|||||||+|.|+
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~ 388 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLM 388 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4899999999999999999999999999999985
No 289
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=97.91 E-value=3.2e-05 Score=75.60 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=34.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.+|+|||.++.||..+.+.||+|+||||+++.||=.
T Consensus 551 k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf 587 (790)
T KOG0056|consen 551 KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF 587 (790)
T ss_pred CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHH
Confidence 5689999999999999999999999999999999843
No 290
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.90 E-value=1.6e-05 Score=86.12 Aligned_cols=37 Identities=16% Similarity=-0.042 Sum_probs=34.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..||+|||-.|+||+.+.|.||+|||||||+++|+=+
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl 1268 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL 1268 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 3589999999999999999999999999999999854
No 291
>PLN03073 ABC transporter F family; Provisional
Probab=97.89 E-value=8.1e-06 Score=82.60 Aligned_cols=35 Identities=3% Similarity=-0.156 Sum_probs=33.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|||-.|++|+.+.|+||+|||||||||+|+=
T Consensus 523 ~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~G 557 (718)
T PLN03073 523 LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISG 557 (718)
T ss_pred eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 59999999999999999999999999999999973
No 292
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=97.85 E-value=1.1e-05 Score=80.64 Aligned_cols=35 Identities=14% Similarity=-0.001 Sum_probs=33.2
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|+|-.|+||+.++|+||+|||||||+|+|+=
T Consensus 466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~G 500 (659)
T TIGR00954 466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGE 500 (659)
T ss_pred eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 59999999999999999999999999999999863
No 293
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=1.7e-05 Score=79.57 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=32.4
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L 217 (231)
+...||+|+|-.|+||+.|.+.||+||||||+...|
T Consensus 479 p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL 514 (716)
T KOG0058|consen 479 PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLL 514 (716)
T ss_pred CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHH
Confidence 346799999999999999999999999999987654
No 294
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.84 E-value=2.3e-05 Score=85.02 Aligned_cols=35 Identities=14% Similarity=-0.059 Sum_probs=33.2
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|+|-.|+||+.+.|.||.|||||||+++|+=
T Consensus 1300 ~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r 1334 (1522)
T TIGR00957 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR 1334 (1522)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 48999999999999999999999999999999873
No 295
>PTZ00243 ABC transporter; Provisional
Probab=97.83 E-value=2.3e-05 Score=85.21 Aligned_cols=35 Identities=14% Similarity=-0.101 Sum_probs=33.1
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|||-.|+||+.+.|.||+|||||||+++|+=
T Consensus 1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlr 1358 (1560)
T PTZ00243 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMR 1358 (1560)
T ss_pred ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 49999999999999999999999999999999863
No 296
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.83 E-value=1.3e-05 Score=79.97 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=34.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.+|+|+|-.|+||+.++|+|++|||||||||+|+-+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 57 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL 57 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4599999999999999999999999999999998743
No 297
>PLN03232 ABC transporter C family member; Provisional
Probab=97.83 E-value=2.4e-05 Score=84.73 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=32.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+|+|+|-.|+||+.+.|.||+|||||||++.|+
T Consensus 1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~ 1283 (1495)
T PLN03232 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF 1283 (1495)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4899999999999999999999999999999987
No 298
>PRK13409 putative ATPase RIL; Provisional
Probab=97.82 E-value=9.6e-06 Score=80.29 Aligned_cols=35 Identities=17% Similarity=-0.073 Sum_probs=32.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|++++ .++||+++.|+||.|||||||||+|+=
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G 121 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSG 121 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999 999999999999999999999999974
No 299
>PRK13409 putative ATPase RIL; Provisional
Probab=97.81 E-value=1.2e-05 Score=79.52 Aligned_cols=34 Identities=15% Similarity=-0.077 Sum_probs=32.1
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.|+++|+.|++||++.|+|+.|||||||||+|+=
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~G 387 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAG 387 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999999999999999973
No 300
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.81 E-value=1.7e-05 Score=68.37 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=36.4
Q ss_pred ccccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 180 LEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 180 kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.-...++|+|+|-.++.||-+.+=||+|||||||||+|+-
T Consensus 20 ~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYa 59 (235)
T COG4778 20 GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYA 59 (235)
T ss_pred CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHh
Confidence 3456889999999999999999999999999999999973
No 301
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.81 E-value=1.4e-05 Score=78.55 Aligned_cols=34 Identities=18% Similarity=-0.100 Sum_probs=32.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+|+|+|-.|+||+.+.+.||+|||||||+|.|.
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~ 382 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQ 382 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 4899999999999999999999999999999885
No 302
>PLN03130 ABC transporter C family member; Provisional
Probab=97.80 E-value=2.6e-05 Score=85.06 Aligned_cols=35 Identities=17% Similarity=0.032 Sum_probs=33.1
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|+|-.|+|||.+.|.||+|||||||++.|+=
T Consensus 1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~r 1287 (1622)
T PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR 1287 (1622)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 48999999999999999999999999999999873
No 303
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.79 E-value=1.6e-05 Score=79.39 Aligned_cols=35 Identities=14% Similarity=0.010 Sum_probs=33.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..||+|+|-.|+||+.+.|.|++|||||||+|.|+
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~ 504 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQ 504 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 35899999999999999999999999999999986
No 304
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=2.3e-05 Score=68.03 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=35.2
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
...|+.++|..+.|||++-|-||.||||||||++|+=+
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL 51 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL 51 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc
Confidence 45799999999999999999999999999999999754
No 305
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.77 E-value=3.3e-05 Score=66.73 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=37.4
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLW 223 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~ 223 (231)
+..|.+|++-.+++|++++|.||.|+|||||||++.++++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l 55 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM 55 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999887754
No 306
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=3.3e-05 Score=75.92 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=32.2
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..++|+|-.++||+.|.++|++|||||||+.+|.
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~ 368 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLL 368 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHh
Confidence 5789999999999999999999999999999885
No 307
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.9e-05 Score=77.28 Aligned_cols=37 Identities=14% Similarity=-0.015 Sum_probs=34.0
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
++.++|+|+|-.++|||-+.|+||+||||||+++.|.
T Consensus 349 ~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~ 385 (573)
T COG4987 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLA 385 (573)
T ss_pred CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHH
Confidence 3456999999999999999999999999999999875
No 308
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.75 E-value=1.9e-05 Score=72.14 Aligned_cols=41 Identities=15% Similarity=-0.025 Sum_probs=36.3
Q ss_pred ccccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 180 LEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 180 kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+++.....+|+|--|.||++++++|+.||||||.||.|.=+
T Consensus 33 k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl 73 (325)
T COG4586 33 KERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL 73 (325)
T ss_pred hhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc
Confidence 34456689999999999999999999999999999998743
No 309
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.71 E-value=6.6e-05 Score=72.15 Aligned_cols=117 Identities=18% Similarity=0.164 Sum_probs=68.7
Q ss_pred ccccCCChhhhhHHHHHHHhhcccCHHHHHHHHHHhhhhcCCCCCeeEEEEEeEEEEEeeeeccCCCCCCchhhhhhhhh
Q 037424 90 INVTKLGALERHVFIEKLIKHIEHDNLQLLRKIRKRMDKVGVKLPTIEVRYKNLWVEAKCEVVHGKPLPTLWNSFKGMIS 169 (231)
Q Consensus 90 vdv~~L~~~~~~~l~~~l~~~~~~D~~~~L~~lr~r~drvGi~lp~ieVrfenLsV~a~~~~vg~~~lPTL~n~~~~~~~ 169 (231)
+-++-| .+|.+..++|+++...--....|.+-|-| .+ ++=.-.+.|+|++-.-.. .-..+. +.|.+...++
T Consensus 315 vl~~pl-teEa~r~i~rf~~~d~~A~~h~L~~pRyr--~v--e~L~~p~~~~~v~k~faS-~ld~~~---lp~e~~~Ile 385 (593)
T COG2401 315 VLPTPL-TEEAKRYIDRFVGEDPMAYPHLLLAPRYR--MV--EKLEGPIKFKNVTKTFAS-ELDIKG---LPNEFQDILE 385 (593)
T ss_pred eeccch-hHHHHHHHHHHhccCccccccceeccccc--cc--cccCCccccceeeeeeee-eeeccc---CChHHHHHHH
Confidence 333333 35667778888865433333333222222 11 111112445555443322 122223 3344444333
Q ss_pred hcccccCCCCccccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 170 VLPKLSGYKSLEAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 170 ~l~~~~~~~~kk~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.++..++......|+|+|-.||||+...|.|++||||||||+.|.=
T Consensus 386 ----SFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G 431 (593)
T COG2401 386 ----SFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG 431 (593)
T ss_pred ----HhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHH
Confidence 3444566778889999999999999999999999999999998853
No 310
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.70 E-value=4.8e-05 Score=75.58 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=33.0
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..|++.+-.|+||+=+||.|++|+|||||||+|+=
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaG 441 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAG 441 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 57899999999999999999999999999999974
No 311
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.68 E-value=3.7e-05 Score=55.09 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=24.2
Q ss_pred EEeC-CeEEEEecCCCCCchhHHHHHHHHH
Q 037424 193 ILKP-GSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 193 iiKP-GeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
-+.| |.+|+|.|+.||||||+|.++..+.
T Consensus 18 ~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 18 DFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred eecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444 4699999999999999999997764
No 312
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.68 E-value=2.2e-05 Score=76.28 Aligned_cols=32 Identities=13% Similarity=-0.020 Sum_probs=30.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQ 215 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK 215 (231)
..+|++||-.+.+|+++.|+||+||||||||+
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 56899999999999999999999999999999
No 313
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.67 E-value=3.2e-05 Score=69.34 Aligned_cols=36 Identities=17% Similarity=0.043 Sum_probs=33.9
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.++||+|+|=.|.|||=-.|+|+.|||||||||.|.
T Consensus 43 gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~ 78 (257)
T COG1119 43 GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLT 78 (257)
T ss_pred CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHh
Confidence 467999999999999999999999999999999875
No 314
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.66 E-value=4e-05 Score=70.86 Aligned_cols=38 Identities=13% Similarity=0.064 Sum_probs=34.7
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.....|+|||-.|++|++..|.|++|||||||++.+=.
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~ 54 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL 54 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhc
Confidence 45678999999999999999999999999999998754
No 315
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.65 E-value=3.2e-05 Score=83.72 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=33.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|+|-.|+||+++.|+||.|||||||||+|.
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~ 473 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIM 473 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 45999999999999999999999999999999986
No 316
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=97.65 E-value=3.8e-05 Score=67.42 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=31.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..|+|+|-.|.|||+-.|+||.|+||||||.+|.
T Consensus 19 ~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~It 52 (249)
T COG4674 19 KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVIT 52 (249)
T ss_pred eeeeeeEEEecCCeEEEEECCCCCCceeeeeeec
Confidence 3689999999999999999999999999998874
No 317
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.64 E-value=7.7e-05 Score=73.26 Aligned_cols=35 Identities=14% Similarity=-0.005 Sum_probs=32.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+++|||..|.|||.+.++|.+||||||+.++|-
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~ 56 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALM 56 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHh
Confidence 56899999999999999999999999999998874
No 318
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.64 E-value=3.6e-05 Score=83.28 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=34.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..||+|+|-.|+||+.+.|+||+|||||||+|.|.=+
T Consensus 398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl 434 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL 434 (1466)
T ss_pred CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4599999999999999999999999999999998753
No 319
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.62 E-value=4.8e-05 Score=68.66 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=34.1
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..++.++|+|-.++||||+-+||+.||||||.++.|.
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmIL 49 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMIL 49 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHh
Confidence 3467899999999999999999999999999999875
No 320
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.60 E-value=0.0001 Score=79.06 Aligned_cols=37 Identities=27% Similarity=0.160 Sum_probs=34.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.+|+|+|-.|+|||-+.|.||.|||||||..+||=++
T Consensus 1154 ~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~ 1190 (1381)
T KOG0054|consen 1154 LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV 1190 (1381)
T ss_pred chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc
Confidence 3899999999999999999999999999999999654
No 321
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.59 E-value=0.0001 Score=62.75 Aligned_cols=37 Identities=16% Similarity=-0.041 Sum_probs=31.8
Q ss_pred cccceeEEeCC-eEEEEecCCCCCchhHHHHHHHHHHH
Q 037424 187 LNRVSGILKPG-SVNLADCLTFLHPLDVFQVLFLLVLW 223 (231)
Q Consensus 187 L~dVSGiiKPG-eMTLVLGrPGSGcSTlLK~L~~~~~~ 223 (231)
.-+++-.+.+| ++++|.||.|||||||||+|.+.++.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~ 54 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM 54 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH
Confidence 45788889999 69999999999999999999965543
No 322
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.57 E-value=5.6e-05 Score=73.63 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=34.6
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
...+.|+|||-.++|||+..|+|-.|||||||+|+|+
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLs 55 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILS 55 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHh
Confidence 3467999999999999999999999999999999986
No 323
>PTZ00243 ABC transporter; Provisional
Probab=97.56 E-value=5.1e-05 Score=82.59 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=33.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.||+|+|-.|+||+++.|+|+.|||||||||+|.
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~ 707 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLL 707 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHh
Confidence 56999999999999999999999999999999986
No 324
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.56 E-value=5.9e-05 Score=74.09 Aligned_cols=35 Identities=11% Similarity=-0.068 Sum_probs=33.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.|++|+|..|.||+...|+||.|+|||||||+|.
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~ 369 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLA 369 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHh
Confidence 67999999999999999999999999999999984
No 325
>PLN03232 ABC transporter C family member; Provisional
Probab=97.55 E-value=5.6e-05 Score=81.90 Aligned_cols=35 Identities=11% Similarity=-0.045 Sum_probs=32.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|+|-.|+||+.+.|.||+||||||||++|.
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLl 664 (1495)
T PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAML 664 (1495)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 35899999999999999999999999999999884
No 326
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.55 E-value=9.4e-05 Score=64.91 Aligned_cols=39 Identities=8% Similarity=0.008 Sum_probs=36.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
..|.+|++-.+++|++++|.||.|+|||||||++.+.++
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~ 56 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITI 56 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999998654
No 327
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.52 E-value=6.3e-05 Score=81.66 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=33.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|+|-.|+||+++.|.||+|||||||||+|.
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~ 685 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALL 685 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35899999999999999999999999999999986
No 328
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.50 E-value=0.00013 Score=62.03 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=29.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
.|.+|++ +.+|+.++|.||.|||||||||+|....+
T Consensus 19 ~~~~~~~--l~~~~~~~l~G~Ng~GKStll~~i~~~~~ 54 (202)
T cd03243 19 FVPNDIN--LGSGRLLLITGPNMGGKSTYLRSIGLAVL 54 (202)
T ss_pred eEeeeEE--EcCCeEEEEECCCCCccHHHHHHHHHHHH
Confidence 4556654 45899999999999999999999996554
No 329
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.48 E-value=0.00012 Score=63.67 Aligned_cols=40 Identities=10% Similarity=-0.033 Sum_probs=35.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWC 224 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~~ 224 (231)
..+.+|++-.+++ ++++|.||+|||||||||++.+++++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~ 57 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA 57 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh
Confidence 4588999988877 999999999999999999999877664
No 330
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.48 E-value=9.4e-05 Score=72.65 Aligned_cols=39 Identities=15% Similarity=-0.021 Sum_probs=35.5
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.....++|||--+++||.+.|.|.+||||||+.|+|.=+
T Consensus 302 ~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL 340 (539)
T COG1123 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340 (539)
T ss_pred cceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456789999999999999999999999999999998643
No 331
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.47 E-value=8.4e-05 Score=80.53 Aligned_cols=35 Identities=11% Similarity=-0.036 Sum_probs=32.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..||+|+|-.|+||+.+.+.|++||||||+++.|.
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~ 1215 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLM 1215 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 35999999999999999999999999999999885
No 332
>PLN03130 ABC transporter C family member; Provisional
Probab=97.46 E-value=8.5e-05 Score=81.18 Aligned_cols=35 Identities=11% Similarity=-0.040 Sum_probs=32.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|+|-.|+||+.+.|.||.||||||||++|.
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLl 664 (1622)
T PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAML 664 (1622)
T ss_pred CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 35899999999999999999999999999999985
No 333
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.44 E-value=9.1e-05 Score=82.59 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=33.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+|+|+|-.|++||++.|+|+.||||||+||+|.=
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~G 1987 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTG 1987 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhC
Confidence 569999999999999999999999999999999863
No 334
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.42 E-value=9.4e-05 Score=72.69 Aligned_cols=35 Identities=20% Similarity=0.070 Sum_probs=33.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.|++|+|-.|.||+-+.|+|+.|+|||||||+|+
T Consensus 16 ~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkila 50 (530)
T COG0488 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILA 50 (530)
T ss_pred ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHc
Confidence 56999999999999999999999999999999986
No 335
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00012 Score=62.88 Aligned_cols=36 Identities=17% Similarity=-0.002 Sum_probs=33.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..|.|++--...|+.+.+|||+|+||||||++|-|+
T Consensus 16 q~lfdi~l~~~~getlvllgpsgagkssllr~lnll 51 (242)
T COG4161 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHH
Confidence 368899999999999999999999999999999886
No 336
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.41 E-value=0.0001 Score=82.13 Aligned_cols=37 Identities=8% Similarity=-0.070 Sum_probs=34.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|+|-.+.+|+++.|+|+.|||||||||+|+-+
T Consensus 943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGL 979 (2272)
T TIGR01257 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGL 979 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcC
Confidence 5699999999999999999999999999999998743
No 337
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00013 Score=63.44 Aligned_cols=32 Identities=19% Similarity=-0.048 Sum_probs=30.3
Q ss_pred cccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 187 LNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 187 L~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
-+|||.-+.|||.+.+.|-+||||||||+.|.
T Consensus 22 c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is 53 (258)
T COG4107 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCIS 53 (258)
T ss_pred ccccceeecCCcEEEEEecCCCcHHhHHHHHh
Confidence 47999999999999999999999999999985
No 338
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.38 E-value=0.0001 Score=64.81 Aligned_cols=34 Identities=18% Similarity=0.012 Sum_probs=30.9
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQ 215 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK 215 (231)
+++++++|||-.+++||++-+|||.||||||-+-
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fy 48 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFY 48 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEE
Confidence 4577999999999999999999999999999653
No 339
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00032 Score=64.87 Aligned_cols=38 Identities=16% Similarity=-0.041 Sum_probs=34.8
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
...+++|||-.|++||.+.|.|-+||||||+.++|.-+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~l 54 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGL 54 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhc
Confidence 45689999999999999999999999999999998654
No 340
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.37 E-value=0.00016 Score=61.39 Aligned_cols=34 Identities=9% Similarity=-0.034 Sum_probs=31.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L 217 (231)
.-+|-|||-.|-|||++-++||+|+||||||-.+
T Consensus 15 ~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~ 48 (213)
T COG4136 15 SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWM 48 (213)
T ss_pred ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHH
Confidence 3478999999999999999999999999999754
No 341
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.29 E-value=0.00019 Score=69.57 Aligned_cols=37 Identities=16% Similarity=0.058 Sum_probs=34.3
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
-...++|||-.|++||+..+||-.|||||||+|+||=
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G 52 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFG 52 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhC
Confidence 3567899999999999999999999999999999984
No 342
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.28 E-value=0.00034 Score=61.07 Aligned_cols=40 Identities=13% Similarity=-0.044 Sum_probs=36.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLW 223 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~ 223 (231)
..|.+|++-.+.+++.++|.||.||||||+||++.++++.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l 56 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLM 56 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999987653
No 343
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.25 E-value=0.00022 Score=75.49 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=33.6
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
...||+|+|-.|+||+.+.|.|++||||||+++.|.
T Consensus 365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~ 400 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLA 400 (1228)
T ss_pred cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHH
Confidence 467999999999999999999999999999999874
No 344
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.00027 Score=62.26 Aligned_cols=38 Identities=11% Similarity=-0.021 Sum_probs=34.0
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
....||+|+|-.|.+|-+|-+.||.||||||||-...=
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sR 49 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSR 49 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHH
Confidence 34679999999999999999999999999999977653
No 345
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.22 E-value=0.0003 Score=61.42 Aligned_cols=39 Identities=15% Similarity=0.026 Sum_probs=35.8
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
....+|++||-..+.|...-++|-+||||||||+.|-+|
T Consensus 17 G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~L 55 (256)
T COG4598 17 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL 55 (256)
T ss_pred ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhh
Confidence 357799999999999999999999999999999998665
No 346
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.15 E-value=0.00049 Score=60.55 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=34.0
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
...-|+++.|=+.||++++|.|+||+|||||+..++.-+
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789988999999999999999999999998876544
No 347
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.14 E-value=0.00027 Score=64.18 Aligned_cols=38 Identities=8% Similarity=-0.088 Sum_probs=34.6
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
...+|++++....++..+.|.|+||||||||++.|.-.
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999999999999988764
No 348
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.08 E-value=0.00074 Score=59.09 Aligned_cols=41 Identities=10% Similarity=-0.024 Sum_probs=37.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWC 224 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~~ 224 (231)
..|-+|++-.+++|++++|.||.++|||||||++.+.++..
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la 57 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA 57 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999987754
No 349
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.06 E-value=0.00055 Score=61.99 Aligned_cols=37 Identities=11% Similarity=-0.091 Sum_probs=34.2
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
....++|||-.|++||.+.|+|.+||||||+-|+|.-
T Consensus 25 ~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~ 61 (268)
T COG4608 25 YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILG 61 (268)
T ss_pred ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHc
Confidence 4678999999999999999999999999999998853
No 350
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.00 E-value=0.00061 Score=56.52 Aligned_cols=31 Identities=16% Similarity=0.060 Sum_probs=26.8
Q ss_pred eEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424 192 GILKPGSVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
|.+.+|+++++.|+||+|||||+-.++.-++
T Consensus 27 g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 27 GLLPRGELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp TEE-TTSEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred CcccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 6888999999999999999999988877554
No 351
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00052 Score=65.92 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=34.7
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.++||+++|-.+.||+++.+.|++|+||||+++.||=
T Consensus 275 ~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfR 311 (497)
T COG5265 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFR 311 (497)
T ss_pred cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHH
Confidence 4679999999999999999999999999999999973
No 352
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=96.96 E-value=0.00051 Score=58.94 Aligned_cols=25 Identities=8% Similarity=-0.084 Sum_probs=22.8
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+.+.++||.||||||||++|..
T Consensus 26 ~~~~~~~i~G~NGsGKSTll~~i~~ 50 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTILDAITY 50 (213)
T ss_pred CccCEEEEECCCCCCHHHHHHHhee
Confidence 4599999999999999999999974
No 353
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.90 E-value=0.00039 Score=63.38 Aligned_cols=30 Identities=7% Similarity=-0.166 Sum_probs=26.9
Q ss_pred cceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 189 RVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 189 dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
=++-.+++|+.+++.|++||||||||++|.
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~ 165 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLV 165 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHH
Confidence 356788999999999999999999999875
No 354
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.90 E-value=0.00077 Score=51.22 Aligned_cols=26 Identities=8% Similarity=-0.196 Sum_probs=22.6
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
++..++|.|+||+||||+++.+.-.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 67789999999999999999987543
No 355
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.88 E-value=0.00022 Score=62.27 Aligned_cols=36 Identities=8% Similarity=-0.120 Sum_probs=27.8
Q ss_pred ccccccceeEEeCCe-EEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGS-VNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGe-MTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+++.+.-.++++. +.+|.|+||+||||+++.++-
T Consensus 29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346666665566554 899999999999999998753
No 356
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.82 E-value=0.0009 Score=72.00 Aligned_cols=34 Identities=9% Similarity=0.008 Sum_probs=31.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.-|+|+|-.||+|+++.|.|+.||||||||.+|.
T Consensus 535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiL 568 (1381)
T KOG0054|consen 535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAIL 568 (1381)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHh
Confidence 3799999999999999999999999999999873
No 357
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.81 E-value=0.00081 Score=63.01 Aligned_cols=25 Identities=4% Similarity=-0.063 Sum_probs=22.7
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+||.+++|.||+||||||+|++|.
T Consensus 131 ~~~~glilI~GpTGSGKTTtL~aLl 155 (358)
T TIGR02524 131 APQEGIVFITGATGSGKSTLLAAII 155 (358)
T ss_pred hccCCEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999999965
No 358
>PF13245 AAA_19: Part of AAA domain
Probab=96.78 E-value=0.0013 Score=48.33 Aligned_cols=24 Identities=0% Similarity=-0.251 Sum_probs=17.8
Q ss_pred CCeEEEEecCCCCCchh-HHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLD-VFQVLFL 219 (231)
Q Consensus 196 PGeMTLVLGrPGSGcST-lLK~L~~ 219 (231)
++.+++|.||||||||+ +++.+.-
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46688899999999994 4444443
No 359
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.74 E-value=0.001 Score=59.29 Aligned_cols=37 Identities=11% Similarity=-0.051 Sum_probs=34.9
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+.||+++|-.|..|+.+-|+|-.||||||||++|+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~ia 53 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIA 53 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhh
Confidence 4577999999999999999999999999999999986
No 360
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.0011 Score=62.75 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=33.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
+.++++.+-.+..|++++++||||+||||++.-|+-..
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788888889999999999999999999999887643
No 361
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0013 Score=61.46 Aligned_cols=33 Identities=15% Similarity=0.007 Sum_probs=30.6
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
=++|+|-.|..||+..++|-+|||||||++.|-
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~N 75 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLN 75 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHh
Confidence 378999999999999999999999999999763
No 362
>PRK05973 replicative DNA helicase; Provisional
Probab=96.72 E-value=0.001 Score=59.15 Aligned_cols=35 Identities=17% Similarity=0.002 Sum_probs=29.3
Q ss_pred cccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 187 LNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 187 L~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.+.+.|=+.||.+++|.|+||+|||||.--++.-+
T Consensus 54 ~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 54 AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56788888999999999999999999876665433
No 363
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.66 E-value=0.0013 Score=53.63 Aligned_cols=30 Identities=20% Similarity=-0.053 Sum_probs=25.7
Q ss_pred eeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 191 SGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.-.++||.+.+|.|+.|||||||.|.++-.
T Consensus 16 ~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 16 AKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 334688999999999999999999998753
No 364
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.66 E-value=0.0022 Score=55.58 Aligned_cols=36 Identities=14% Similarity=0.019 Sum_probs=28.2
Q ss_pred cccccceeEEeCC--eEEEEecCCCCCchhHHHHHHHHHH
Q 037424 185 NILNRVSGILKPG--SVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 185 ~IL~dVSGiiKPG--eMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
.|=+|++- .++ +.++|.||.|+|||||||++.+.++
T Consensus 17 ~vpnd~~l--~~~~~~~~~itGpNg~GKStlLk~i~~~~~ 54 (213)
T cd03281 17 FVPNDTEI--GGGGPSIMVITGPNSSGKSVYLKQVALIVF 54 (213)
T ss_pred eEcceEEe--cCCCceEEEEECCCCCChHHHHHHHHHHHH
Confidence 35566652 333 8899999999999999999997654
No 365
>PRK09183 transposase/IS protein; Provisional
Probab=96.62 E-value=0.0016 Score=58.16 Aligned_cols=37 Identities=8% Similarity=-0.136 Sum_probs=30.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
..-|.+++- ++.|+.+++.||||+|||+|..+|...+
T Consensus 90 i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 90 LQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred HHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 334556665 8899999999999999999999996554
No 366
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.61 E-value=0.0014 Score=60.75 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=22.5
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+|+.+++|.||+||||||+|++|.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~ 143 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMI 143 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHH
Confidence 4678899999999999999999864
No 367
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.58 E-value=0.0029 Score=62.42 Aligned_cols=36 Identities=8% Similarity=-0.090 Sum_probs=33.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+++|++--+.+||-..++|+.||||||||++|+.
T Consensus 88 ~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~ 123 (614)
T KOG0927|consen 88 VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAG 123 (614)
T ss_pred ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhc
Confidence 457899999999999999999999999999999874
No 368
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.56 E-value=0.0026 Score=66.37 Aligned_cols=36 Identities=8% Similarity=-0.027 Sum_probs=32.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
...|+|++-.|++|+++.|.|+.|||||||++-...
T Consensus 620 ~~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~ 655 (924)
T TIGR00630 620 ENNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLY 655 (924)
T ss_pred cCCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999999999999985543
No 369
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=96.54 E-value=0.0015 Score=58.16 Aligned_cols=34 Identities=18% Similarity=0.005 Sum_probs=31.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+|.-|+|-.+..|.-+||.|..|||||||||.|.
T Consensus 28 P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLs 61 (291)
T KOG2355|consen 28 PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILS 61 (291)
T ss_pred ceEEEEeeccCCCceEEEEecCCCchhhhHHHhc
Confidence 5788999999999999999999999999999985
No 370
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.49 E-value=0.0022 Score=55.74 Aligned_cols=24 Identities=4% Similarity=-0.267 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCCCchhHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+..++.|.|++|||||||.+.|.=
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998874
No 371
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.46 E-value=0.0015 Score=60.98 Aligned_cols=28 Identities=11% Similarity=-0.177 Sum_probs=24.9
Q ss_pred eeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 191 SGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
...++++..+||.|++||||||||++|.
T Consensus 156 ~~~v~~~~nilI~G~tGSGKTTll~aLl 183 (344)
T PRK13851 156 HACVVGRLTMLLCGPTGSGKTTMSKTLI 183 (344)
T ss_pred HHHHHcCCeEEEECCCCccHHHHHHHHH
Confidence 3457889999999999999999999975
No 372
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.43 E-value=0.0022 Score=59.09 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=30.2
Q ss_pred ccc-ceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424 187 LNR-VSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 187 L~d-VSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
|+. +.|=+.||++|.|.|+||+|||||...++.-+.
T Consensus 85 lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~ 121 (316)
T TIGR02239 85 LDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQ 121 (316)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHh
Confidence 555 567789999999999999999999988876443
No 373
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.42 E-value=0.0027 Score=57.30 Aligned_cols=28 Identities=11% Similarity=-0.057 Sum_probs=24.3
Q ss_pred CCeE-EEEecCCCCCchhHHHHHHHHHHH
Q 037424 196 PGSV-NLADCLTFLHPLDVFQVLFLLVLW 223 (231)
Q Consensus 196 PGeM-TLVLGrPGSGcSTlLK~L~~~~~~ 223 (231)
-|.. ||++||||+||||+|+-|+=++-.
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~ 163 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSD 163 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhc
Confidence 4777 999999999999999999876543
No 374
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.37 E-value=0.0025 Score=60.07 Aligned_cols=25 Identities=4% Similarity=-0.352 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.+++++.||||||||||.+.|+-.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578899999999999999998643
No 375
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.37 E-value=0.0034 Score=60.12 Aligned_cols=31 Identities=10% Similarity=-0.056 Sum_probs=28.8
Q ss_pred cceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 189 RVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 189 dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
|+.--|.+|+..+|+||||+||||+++.|+=
T Consensus 160 d~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~ 190 (415)
T TIGR00767 160 DLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQ 190 (415)
T ss_pred eeEEEeCCCCEEEEECCCCCChhHHHHHHHH
Confidence 8889999999999999999999999998764
No 376
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.36 E-value=0.0021 Score=56.78 Aligned_cols=31 Identities=10% Similarity=-0.018 Sum_probs=25.3
Q ss_pred ccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 188 NRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 188 ~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+=+...++.+..+++-|++||||||+|++|.
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all 148 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALL 148 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHh
Confidence 3344456778899999999999999999884
No 377
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.32 E-value=0.003 Score=45.09 Aligned_cols=21 Identities=10% Similarity=-0.360 Sum_probs=18.0
Q ss_pred EEEecCCCCCchhHHHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+.|+|||||||+.+.|.-.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999998754
No 378
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.31 E-value=0.0035 Score=57.83 Aligned_cols=27 Identities=15% Similarity=-0.139 Sum_probs=24.1
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
++|++++++|||||||||++..|+...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999999999998653
No 379
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.30 E-value=0.0031 Score=59.72 Aligned_cols=40 Identities=8% Similarity=0.014 Sum_probs=33.5
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
...-|+++.|=+.||++++|-|+||+|||||.--++.-+.
T Consensus 181 G~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a 220 (434)
T TIGR00665 181 GFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAA 220 (434)
T ss_pred CchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHH
Confidence 3556888877789999999999999999999988765443
No 380
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.30 E-value=0.0057 Score=62.73 Aligned_cols=37 Identities=19% Similarity=-0.093 Sum_probs=31.1
Q ss_pred ceeEEeCC-eEEEEecCCCCCchhHHHHHHHHHHHHHh
Q 037424 190 VSGILKPG-SVNLADCLTFLHPLDVFQVLFLLVLWCLH 226 (231)
Q Consensus 190 VSGiiKPG-eMTLVLGrPGSGcSTlLK~L~~~~~~~~~ 226 (231)
++-.+.++ +.++|.||.|+|||||||+|.+.++..-+
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~ 351 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQS 351 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHh
Confidence 56667777 99999999999999999999998665544
No 381
>PLN02796 D-glycerate 3-kinase
Probab=96.28 E-value=0.0015 Score=61.15 Aligned_cols=23 Identities=13% Similarity=-0.117 Sum_probs=20.1
Q ss_pred EEEEecCCCCCchhHHHHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
++.|.|++|||||||++.|.-+.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 48999999999999999887553
No 382
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.26 E-value=0.0034 Score=57.53 Aligned_cols=23 Identities=4% Similarity=-0.291 Sum_probs=20.1
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+.++-|+|+|||||||||+.|.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~ 125 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETL 125 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46688899999999999998775
No 383
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.25 E-value=0.0046 Score=50.87 Aligned_cols=29 Identities=10% Similarity=-0.023 Sum_probs=24.5
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLLVLWC 224 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~~~~~ 224 (231)
++.++.|-||.||||||+||++.+++.-.
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~ 48 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGA 48 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 44799999999999999999987776544
No 384
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.24 E-value=0.0035 Score=60.65 Aligned_cols=35 Identities=9% Similarity=-0.029 Sum_probs=30.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+++.++ .|.+|+.++|+|++|+||||||+.|.-
T Consensus 153 i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~ 187 (450)
T PRK06002 153 VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLAR 187 (450)
T ss_pred cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45677787 689999999999999999999998764
No 385
>PRK15494 era GTPase Era; Provisional
Probab=96.22 E-value=0.0033 Score=58.23 Aligned_cols=33 Identities=6% Similarity=-0.127 Sum_probs=27.4
Q ss_pred ccccceeEEeCCe-------EEEEecCCCCCchhHHHHHH
Q 037424 186 ILNRVSGILKPGS-------VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 186 IL~dVSGiiKPGe-------MTLVLGrPGSGcSTlLK~L~ 218 (231)
.+.+++-.+++|+ -++|+|+||+|||||++.|.
T Consensus 34 ~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~ 73 (339)
T PRK15494 34 STSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRII 73 (339)
T ss_pred cccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHh
Confidence 4566666678888 78999999999999999874
No 386
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.20 E-value=0.0032 Score=52.75 Aligned_cols=21 Identities=14% Similarity=-0.130 Sum_probs=18.7
Q ss_pred EEEEecCCCCCchhHHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~~ 219 (231)
-++|+|+||+|||||++.|.-
T Consensus 43 ~I~iiG~~g~GKStLl~~l~~ 63 (204)
T cd01878 43 TVALVGYTNAGKSTLFNALTG 63 (204)
T ss_pred eEEEECCCCCCHHHHHHHHhc
Confidence 678999999999999998764
No 387
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.19 E-value=0.0028 Score=63.69 Aligned_cols=36 Identities=11% Similarity=-0.110 Sum_probs=29.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+|++++--..||++++|.||||+||||++++|+=.
T Consensus 98 ~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 98 TWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345666555789999999999999999999999844
No 388
>PRK08149 ATP synthase SpaL; Validated
Probab=96.17 E-value=0.0045 Score=59.53 Aligned_cols=34 Identities=6% Similarity=-0.075 Sum_probs=31.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+++ -.+..|+.+.|+|++|+||||||+.|+
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~ 172 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLI 172 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHh
Confidence 4689999 889999999999999999999999875
No 389
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.16 E-value=0.003 Score=57.72 Aligned_cols=26 Identities=12% Similarity=-0.173 Sum_probs=23.2
Q ss_pred EEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 193 ILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 193 iiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.++++..++|-|++||||||||++|.
T Consensus 128 ~v~~~~~ilI~G~tGSGKTTll~al~ 153 (299)
T TIGR02782 128 AVLARKNILVVGGTGSGKTTLANALL 153 (299)
T ss_pred HHHcCCeEEEECCCCCCHHHHHHHHH
Confidence 46678889999999999999999975
No 390
>PRK00098 GTPase RsgA; Reviewed
Probab=96.14 E-value=0.0037 Score=56.85 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+|.++.++|+||+|||||++.|.
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~ 185 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALA 185 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999999985
No 391
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=96.12 E-value=0.0064 Score=63.65 Aligned_cols=36 Identities=11% Similarity=-0.004 Sum_probs=32.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+.|+|++-.|.+|+++.|.|..|||||||++.+..
T Consensus 622 ~~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~ 657 (943)
T PRK00349 622 ENNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLY 657 (943)
T ss_pred cCCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346999999999999999999999999999997754
No 392
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.11 E-value=0.0052 Score=57.13 Aligned_cols=34 Identities=3% Similarity=-0.089 Sum_probs=31.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+++ -.+.+|+.+.|+|++|+||||||+.|.
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia 90 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIA 90 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHh
Confidence 5689999 899999999999999999999999876
No 393
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.10 E-value=0.0044 Score=52.20 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=22.6
Q ss_pred ceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 190 VSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 190 VSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.-.+++ +.++++|++|+|||||++.|.
T Consensus 29 l~~~l~~-k~~vl~G~SGvGKSSLiN~L~ 56 (161)
T PF03193_consen 29 LKELLKG-KTSVLLGQSGVGKSSLINALL 56 (161)
T ss_dssp HHHHHTT-SEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhcC-CEEEEECCCCCCHHHHHHHHH
Confidence 3334444 789999999999999999985
No 394
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.08 E-value=0.0045 Score=55.51 Aligned_cols=24 Identities=17% Similarity=0.029 Sum_probs=21.2
Q ss_pred eCCeEEEEecCCCCCchhHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+++.+++|-|++||||||+|+++.
T Consensus 78 ~~~GlilisG~tGSGKTT~l~all 101 (264)
T cd01129 78 KPHGIILVTGPTGSGKTTTLYSAL 101 (264)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHH
Confidence 566789999999999999999864
No 395
>PLN02200 adenylate kinase family protein
Probab=96.07 E-value=0.0051 Score=54.22 Aligned_cols=25 Identities=4% Similarity=-0.285 Sum_probs=20.9
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.|+..+.+|+|+|||||||+-+.|+
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La 64 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIV 64 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3444678999999999999988876
No 396
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.06 E-value=0.005 Score=65.53 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=32.1
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L 217 (231)
+...||+|+|-.|++|+-+.+.||+||||||..-.|
T Consensus 1001 P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LL 1036 (1228)
T KOG0055|consen 1001 PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLL 1036 (1228)
T ss_pred CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 446799999999999999999999999999986543
No 397
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.04 E-value=0.0036 Score=57.85 Aligned_cols=26 Identities=8% Similarity=-0.129 Sum_probs=23.5
Q ss_pred EEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 193 ILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 193 iiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.++++.-++|.|+|||||||||++|.
T Consensus 144 ~v~~~~~ilI~G~tGSGKTTll~aL~ 169 (319)
T PRK13894 144 AVRAHRNILVIGGTGSGKTTLVNAII 169 (319)
T ss_pred HHHcCCeEEEECCCCCCHHHHHHHHH
Confidence 56788899999999999999999986
No 398
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.99 E-value=0.0043 Score=56.09 Aligned_cols=22 Identities=9% Similarity=-0.179 Sum_probs=19.5
Q ss_pred eEEEEecCCCCCchhHHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.-++++|+|||||||||++|+=
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~ 133 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLAR 133 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC
Confidence 4578999999999999999874
No 399
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.99 E-value=0.0066 Score=58.51 Aligned_cols=34 Identities=9% Similarity=-0.039 Sum_probs=31.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.+|+++ -.|.+|+.+.++|++|+||||+++.|.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~ 176 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMIT 176 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHh
Confidence 5689999 999999999999999999999999875
No 400
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=95.97 E-value=0.0077 Score=66.59 Aligned_cols=35 Identities=9% Similarity=0.014 Sum_probs=31.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|+|-.|++|+++.|.|+.|||||||++-+.
T Consensus 608 ~~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L 642 (1809)
T PRK00635 608 KHNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTL 642 (1809)
T ss_pred cCCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHH
Confidence 35799999999999999999999999999999433
No 401
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=95.97 E-value=0.0019 Score=61.11 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=31.0
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++..+||-+=+=-+|||||.+-||.||||||||---.|
T Consensus 258 kRFpvLNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsL 295 (514)
T KOG2373|consen 258 KRFPVLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSL 295 (514)
T ss_pred hhhhHHHHHhccCCCCceEEEecCCCCCceeEehHhhH
Confidence 34667777777789999999999999999999865443
No 402
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.96 E-value=0.0061 Score=58.77 Aligned_cols=35 Identities=3% Similarity=-0.096 Sum_probs=32.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+++++ -.+.+|+.+.++|++|+||||||+.|.-
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~ 180 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIAR 180 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 5689999 9999999999999999999999998763
No 403
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.95 E-value=0.003 Score=58.26 Aligned_cols=31 Identities=6% Similarity=-0.128 Sum_probs=26.4
Q ss_pred cceeEEeC--CeEEEEecCCCCCchhHHHHHHH
Q 037424 189 RVSGILKP--GSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 189 dVSGiiKP--GeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+++-.++| ++...|+|+||+|||||.+.|.-
T Consensus 152 ~i~~~~~~~~~~~~~~~G~~~~gkstl~~~l~~ 184 (325)
T TIGR01526 152 HIPREVRPFFVKTVAILGGESTGKSTLVNKLAA 184 (325)
T ss_pred hCCHHHHhhcCcEEEEECCCCCCHHHHHHHHHH
Confidence 35566777 88999999999999999999875
No 404
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.94 E-value=0.0063 Score=49.42 Aligned_cols=20 Identities=5% Similarity=-0.245 Sum_probs=17.5
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
..+++|+||+|||||+++|.
T Consensus 104 ~v~~~G~~nvGKStliN~l~ 123 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLR 123 (157)
T ss_pred EEEEEeCCCCChHHHHHHHh
Confidence 34689999999999999984
No 405
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=95.92 E-value=0.0066 Score=60.38 Aligned_cols=42 Identities=17% Similarity=0.056 Sum_probs=36.7
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHHHHh
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWCLH 226 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~~~~ 226 (231)
...|.+|.|--|..|.-+||.||+|+|||+||++|. -||-+|
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlg--gLWp~~ 488 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLG--GLWPST 488 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHh--cccccC
Confidence 455889999999999999999999999999999986 356554
No 406
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.92 E-value=0.004 Score=57.80 Aligned_cols=28 Identities=4% Similarity=-0.202 Sum_probs=24.0
Q ss_pred eeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 191 SGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
...++.+..+||-|++||||||||++|.
T Consensus 154 ~~~v~~~~nili~G~tgSGKTTll~aL~ 181 (332)
T PRK13900 154 EHAVISKKNIIISGGTSTGKTTFTNAAL 181 (332)
T ss_pred HHHHHcCCcEEEECCCCCCHHHHHHHHH
Confidence 3356788899999999999999999974
No 407
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.91 E-value=0.0055 Score=53.32 Aligned_cols=28 Identities=11% Similarity=-0.142 Sum_probs=25.4
Q ss_pred eEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 192 GILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
|...|++++.|+|+||+|||||++.|.-
T Consensus 34 ~~~~~~~~i~ivG~~~~GKstl~~~l~~ 61 (225)
T cd01882 34 PEEPPPLVVAVVGPPGVGKTTLIKSLVK 61 (225)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 7789999999999999999999988753
No 408
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.91 E-value=0.0053 Score=57.88 Aligned_cols=34 Identities=29% Similarity=0.211 Sum_probs=27.4
Q ss_pred cccce-eEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 187 LNRVS-GILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 187 L~dVS-GiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
|+.+- |=+.||+++||-|+||+|||||+..++--
T Consensus 71 LD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~ 105 (372)
T cd01121 71 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR 105 (372)
T ss_pred HHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45543 45779999999999999999999887643
No 409
>PTZ00035 Rad51 protein; Provisional
Probab=95.89 E-value=0.0062 Score=56.61 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=26.7
Q ss_pred eeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 191 SGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.|=|.+|++|.|.|+||||||||...+...+
T Consensus 112 gGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 112 GGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred CCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 4668899999999999999999998776544
No 410
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.89 E-value=0.0053 Score=58.05 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=33.2
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
...-|+++.|=++||++++|-||||+|||||.-.++.-+
T Consensus 180 G~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~ 218 (421)
T TIGR03600 180 GLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENV 218 (421)
T ss_pred CChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 356688888778999999999999999999998887443
No 411
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=95.87 E-value=0.0058 Score=55.27 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=20.7
Q ss_pred CeEEEEecCCCCCchhHHHHHHH
Q 037424 197 GSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++++.++|+||+|||||+++|.=
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~ 183 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLP 183 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhc
Confidence 37999999999999999999863
No 412
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.85 E-value=0.0069 Score=55.37 Aligned_cols=23 Identities=9% Similarity=-0.099 Sum_probs=20.3
Q ss_pred eEEEEecCCCCCchhHHHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.++.|.|+||||||||.+.|.-+
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 68899999999999999987644
No 413
>PRK01889 GTPase RsgA; Reviewed
Probab=95.84 E-value=0.0032 Score=58.80 Aligned_cols=32 Identities=13% Similarity=0.054 Sum_probs=27.0
Q ss_pred cccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 187 LNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 187 L~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
++.+.-.++||+++.++|+||+|||||+++|.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~ 216 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALL 216 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHH
Confidence 34444557899999999999999999999986
No 414
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.77 E-value=0.0089 Score=53.23 Aligned_cols=30 Identities=10% Similarity=-0.108 Sum_probs=24.9
Q ss_pred ccceeEEeCCeEEEEecCCCCCchhHHHHH
Q 037424 188 NRVSGILKPGSVNLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 188 ~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L 217 (231)
+-..|=+.+|.+|||.|+||+|||||---+
T Consensus 27 ~~~~GGip~gs~~lI~G~pGtGKT~l~~qf 56 (259)
T TIGR03878 27 RKPLGGIPAYSVINITGVSDTGKSLMVEQF 56 (259)
T ss_pred cccCCCeECCcEEEEEcCCCCCHHHHHHHH
Confidence 345666889999999999999999986654
No 415
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.75 E-value=0.0066 Score=58.60 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=28.0
Q ss_pred ccccc-eeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 186 ILNRV-SGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 186 IL~dV-SGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
=|+.+ .|=+.||+++||.|+||+|||||+..++-
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~ 116 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVAC 116 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 36665 35688999999999999999999987643
No 416
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.75 E-value=0.006 Score=57.59 Aligned_cols=24 Identities=8% Similarity=-0.063 Sum_probs=20.7
Q ss_pred eCCeEEEEecCCCCCchhHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+++-++||-||+||||||+|++|.
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~al~ 170 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAASIY 170 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHH
Confidence 345589999999999999999974
No 417
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.73 E-value=0.0071 Score=58.03 Aligned_cols=27 Identities=19% Similarity=-0.016 Sum_probs=24.3
Q ss_pred EEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 193 ILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 193 iiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++.+|+.+.++||+|+||||+++.|+-
T Consensus 187 ~~~~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 187 IIEQGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999998875
No 418
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.73 E-value=0.0099 Score=52.20 Aligned_cols=38 Identities=13% Similarity=-0.059 Sum_probs=34.4
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
...+..+.||..++.|..+.+.|..|||||||-|.|+=
T Consensus 24 ~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaG 61 (267)
T COG4167 24 QTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred hhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhc
Confidence 44667899999999999999999999999999999863
No 419
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.69 E-value=0.0061 Score=56.58 Aligned_cols=28 Identities=4% Similarity=-0.224 Sum_probs=22.7
Q ss_pred EEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 193 ILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 193 iiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.++.+...||-|++||||||||++|.-.
T Consensus 140 ~v~~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 140 AIDSRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred HHHcCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4455667899999999999999997643
No 420
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=95.68 E-value=0.011 Score=52.20 Aligned_cols=41 Identities=7% Similarity=0.002 Sum_probs=30.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWC 224 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~~ 224 (231)
..|-+|+.-.-...++++|-||..||||||||++.+.++.+
T Consensus 30 ~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ila 70 (235)
T PF00488_consen 30 KFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILA 70 (235)
T ss_dssp SC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHH
T ss_pred ceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhh
Confidence 33556665433334699999999999999999999998865
No 421
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=95.67 E-value=0.011 Score=56.99 Aligned_cols=32 Identities=9% Similarity=-0.064 Sum_probs=29.4
Q ss_pred cccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 187 LNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 187 L~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+..||-.||.||++.+.|..|||||||+|.|.
T Consensus 339 vgPiNl~ikrGelvFliG~NGsGKST~~~LLt 370 (546)
T COG4615 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLT 370 (546)
T ss_pred ecceeeEEecCcEEEEECCCCCcHHHHHHHHh
Confidence 56788999999999999999999999999875
No 422
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=95.67 E-value=0.0087 Score=50.59 Aligned_cols=37 Identities=19% Similarity=-0.036 Sum_probs=24.7
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
..+.+..-++..--+||.|.||||||++|++|..-++
T Consensus 27 ~~~~v~~dl~~~~h~li~G~tgsGKS~~l~~ll~~l~ 63 (205)
T PF01580_consen 27 RGDPVVLDLKKNPHLLIAGATGSGKSTLLRTLLLSLA 63 (205)
T ss_dssp TS-EEEEEGGGS-SEEEE--TTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCceEEEEcCCCCCccHHHHHHHHHHH
Confidence 3445555555555789999999999999998766543
No 423
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.64 E-value=0.0083 Score=58.58 Aligned_cols=36 Identities=17% Similarity=0.015 Sum_probs=29.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.++++.+-.+..|++.+++||+|+||||.+.-|+-.
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHH
Confidence 355666666778899999999999999999988843
No 424
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=95.62 E-value=0.0098 Score=61.76 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=31.2
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+++|..|+|||...+||+.||||||++|.|.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mlt 612 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLT 612 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHh
Confidence 899999999999999999999999999999653
No 425
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.61 E-value=0.008 Score=57.15 Aligned_cols=26 Identities=8% Similarity=-0.185 Sum_probs=22.9
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.|++-+|+.||||+|||++.|+++-
T Consensus 176 l~~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46778889999999999999999864
No 426
>PRK09862 putative ATP-dependent protease; Provisional
Probab=95.60 E-value=0.008 Score=58.98 Aligned_cols=35 Identities=6% Similarity=-0.330 Sum_probs=31.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..++++++=.+.+|+.+++.|+||+|||||+|.|.
T Consensus 197 ~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~ 231 (506)
T PRK09862 197 EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRIN 231 (506)
T ss_pred HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHh
Confidence 44778888889999999999999999999999886
No 427
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.59 E-value=0.009 Score=61.22 Aligned_cols=37 Identities=16% Similarity=0.021 Sum_probs=31.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.++++++..+++|++++++||.|+||||.+.-|+-.
T Consensus 172 l~il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 172 LPVLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred hhhccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhh
Confidence 3467788877888999999999999999999888754
No 428
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.57 E-value=0.014 Score=52.83 Aligned_cols=25 Identities=4% Similarity=-0.300 Sum_probs=22.8
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
||+.++++|++|+||||+++.|+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 7799999999999999999998754
No 429
>PRK09165 replicative DNA helicase; Provisional
Probab=95.56 E-value=0.0079 Score=58.67 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=32.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
+.=|+++.|=++||++++|-||||.|||||.=-++.-+
T Consensus 204 ~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~ 241 (497)
T PRK09165 204 LRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNA 241 (497)
T ss_pred hHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHH
Confidence 55688988779999999999999999999987666543
No 430
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.55 E-value=0.011 Score=57.07 Aligned_cols=34 Identities=6% Similarity=-0.095 Sum_probs=30.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.+|+.+ -.+.+|+.+.|+|++|+||||||+.|.
T Consensus 150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~ 183 (444)
T PRK08972 150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMT 183 (444)
T ss_pred ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhc
Confidence 5567777 889999999999999999999999886
No 431
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=95.55 E-value=0.0094 Score=57.13 Aligned_cols=35 Identities=3% Similarity=-0.145 Sum_probs=31.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+++ -.+.+|+.+.+.|++|+||||||++|.-
T Consensus 133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~ 167 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIAR 167 (422)
T ss_pred ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhC
Confidence 5689999 8899999999999999999999998863
No 432
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.53 E-value=0.012 Score=56.84 Aligned_cols=35 Identities=9% Similarity=-0.034 Sum_probs=32.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+++++ -.+.+|+.+.|+|++|+||||||+.|+-
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~ 185 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFAR 185 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhC
Confidence 6689999 7889999999999999999999999874
No 433
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.50 E-value=0.0078 Score=56.06 Aligned_cols=27 Identities=4% Similarity=-0.204 Sum_probs=21.9
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
++.-...|.|+||||||||++.|.-..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345688899999999999999876543
No 434
>PRK07004 replicative DNA helicase; Provisional
Probab=95.43 E-value=0.01 Score=57.32 Aligned_cols=38 Identities=8% Similarity=-0.034 Sum_probs=32.9
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.-..-|++++|=++||++++|-|+||.|||+|.-.++.
T Consensus 198 TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~ 235 (460)
T PRK07004 198 TGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGE 235 (460)
T ss_pred CCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHH
Confidence 34667999988799999999999999999999877764
No 435
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.42 E-value=0.012 Score=56.85 Aligned_cols=34 Identities=12% Similarity=0.015 Sum_probs=31.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.+|+++ -.+.+|+.+.|+|++|+||||||+.|.
T Consensus 143 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~ 176 (433)
T PRK07594 143 IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLC 176 (433)
T ss_pred ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhc
Confidence 5689999 889999999999999999999999875
No 436
>PRK05595 replicative DNA helicase; Provisional
Probab=95.42 E-value=0.0091 Score=57.13 Aligned_cols=38 Identities=8% Similarity=-0.012 Sum_probs=32.7
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
....-|++..|=++||++++|.||||.|||||.--++.
T Consensus 186 tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~ 223 (444)
T PRK05595 186 SGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAE 223 (444)
T ss_pred CChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHH
Confidence 33566888888899999999999999999999877764
No 437
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.42 E-value=0.012 Score=53.28 Aligned_cols=30 Identities=7% Similarity=-0.120 Sum_probs=24.9
Q ss_pred eeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 191 SGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.|=+..|.+|+|.|+||||||||.-.++.-
T Consensus 89 ~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~ 118 (310)
T TIGR02236 89 GGGIETQAITEVFGEFGSGKTQICHQLAVN 118 (310)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345668999999999999999998777544
No 438
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=95.40 E-value=0.0084 Score=58.67 Aligned_cols=34 Identities=9% Similarity=-0.268 Sum_probs=30.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+.++++=.+.+|+.++++|+||+|||||+|.|.
T Consensus 199 ~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~ 232 (499)
T TIGR00368 199 HAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQ 232 (499)
T ss_pred HHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHh
Confidence 3567788888999999999999999999999986
No 439
>PRK08760 replicative DNA helicase; Provisional
Probab=95.39 E-value=0.011 Score=57.31 Aligned_cols=39 Identities=8% Similarity=0.012 Sum_probs=33.0
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
-..-|+++.|=++||++++|-||||.|||||.--++.-+
T Consensus 215 G~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~ 253 (476)
T PRK08760 215 GYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYA 253 (476)
T ss_pred CcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHH
Confidence 356688887669999999999999999999998887544
No 440
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=95.37 E-value=0.01 Score=52.85 Aligned_cols=21 Identities=14% Similarity=-0.080 Sum_probs=18.5
Q ss_pred EEEEecCCCCCchhHHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~~ 219 (231)
-.+|+|++|+|||||.++|+=
T Consensus 33 ~IllvG~tGvGKSSliNaLlg 53 (249)
T cd01853 33 TILVLGKTGVGKSSTINSIFG 53 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 557899999999999999873
No 441
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=95.37 E-value=0.011 Score=58.13 Aligned_cols=36 Identities=11% Similarity=-0.046 Sum_probs=33.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||++-+-.+.-||-..|.||.|+|||||||+|+=
T Consensus 93 k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 93 KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 458999999999999999999999999999999975
No 442
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.35 E-value=0.016 Score=53.79 Aligned_cols=26 Identities=12% Similarity=-0.164 Sum_probs=21.9
Q ss_pred eEEeCCeEEEEecCCCCCchhHHHHH
Q 037424 192 GILKPGSVNLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 192 GiiKPGeMTLVLGrPGSGcSTlLK~L 217 (231)
|=+.+|++|+|.||||||||||.-.+
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~ 75 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHA 75 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHH
Confidence 34679999999999999999995443
No 443
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.32 E-value=0.015 Score=56.07 Aligned_cols=36 Identities=28% Similarity=0.206 Sum_probs=29.1
Q ss_pred cccccc-eeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRV-SGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dV-SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.-|+.+ .|=+.||+++||.|+||+|||||+-.++.-
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~ 103 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR 103 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 346665 356779999999999999999999887654
No 444
>PRK05636 replicative DNA helicase; Provisional
Probab=95.31 E-value=0.013 Score=57.31 Aligned_cols=37 Identities=8% Similarity=0.017 Sum_probs=31.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..=|+++.|=++||++++|-|+||.|||||.--++.-
T Consensus 252 ~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~ 288 (505)
T PRK05636 252 FKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRS 288 (505)
T ss_pred hHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 5568898888999999999999999999997666543
No 445
>PHA02542 41 41 helicase; Provisional
Probab=95.31 E-value=0.011 Score=57.37 Aligned_cols=39 Identities=18% Similarity=0.064 Sum_probs=34.3
Q ss_pred cccccccce-eEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 183 KINILNRVS-GILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 183 ~~~IL~dVS-GiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
-..-|+.+. |=++||+|++|-||||.|||||.--++.-+
T Consensus 175 G~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~ 214 (473)
T PHA02542 175 KLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADY 214 (473)
T ss_pred CcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHH
Confidence 366799998 788999999999999999999998887654
No 446
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.31 E-value=0.014 Score=49.58 Aligned_cols=26 Identities=8% Similarity=-0.252 Sum_probs=22.4
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.+.-++|.|+||+|||++++.++--
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 56778899999999999999988743
No 447
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.30 E-value=0.016 Score=56.19 Aligned_cols=34 Identities=12% Similarity=-0.099 Sum_probs=31.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.+|+++ -.|.+|+.++++|++|+|||||++.|.
T Consensus 156 i~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~ 189 (451)
T PRK05688 156 IRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMT 189 (451)
T ss_pred eeeecce-EEecCCcEEEEECCCCCCHHHHHHHHh
Confidence 5688999 889999999999999999999999885
No 448
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.30 E-value=0.012 Score=57.87 Aligned_cols=25 Identities=16% Similarity=0.017 Sum_probs=22.1
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+++++||=|||||||||.+|+|+=
T Consensus 43 ~~~~iLlLtGP~G~GKtttv~~La~ 67 (519)
T PF03215_consen 43 SPKRILLLTGPSGCGKTTTVKVLAK 67 (519)
T ss_pred CCcceEEEECCCCCCHHHHHHHHHH
Confidence 4667999999999999999999873
No 449
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=95.27 E-value=0.017 Score=63.99 Aligned_cols=33 Identities=6% Similarity=-0.048 Sum_probs=30.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L 217 (231)
+.|+|++-.|.+|++|.|.|+.|||||||++.+
T Consensus 949 ~~lk~isl~i~~gei~~itG~nGsGKStL~~~~ 981 (1809)
T PRK00635 949 HNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI 981 (1809)
T ss_pred ccccceeEEecCCcEEEEECCCCCChhHHHHHH
Confidence 469999999999999999999999999988766
No 450
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.25 E-value=0.018 Score=55.11 Aligned_cols=34 Identities=6% Similarity=-0.069 Sum_probs=30.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+++.+ -.+.+|+.++|+|++|+||||||+.|.
T Consensus 125 i~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~ 158 (411)
T TIGR03496 125 VRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMA 158 (411)
T ss_pred EEeecce-EEEecCcEEEEECCCCCCHHHHHHHHh
Confidence 5678888 889999999999999999999999876
No 451
>PRK08506 replicative DNA helicase; Provisional
Probab=95.24 E-value=0.014 Score=56.63 Aligned_cols=40 Identities=10% Similarity=0.072 Sum_probs=34.1
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.-..-|+++.|=++||++++|-||||.|||+|.--++.=+
T Consensus 177 TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~ 216 (472)
T PRK08506 177 TGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKA 216 (472)
T ss_pred CChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHH
Confidence 3466788888779999999999999999999998887653
No 452
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=95.23 E-value=0.013 Score=56.45 Aligned_cols=35 Identities=3% Similarity=-0.115 Sum_probs=31.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+++ -.+.+|+.+.|+|++|+||||||+.|.-
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~ 185 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIAR 185 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 5688888 8899999999999999999999998763
No 453
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.23 E-value=0.015 Score=47.23 Aligned_cols=23 Identities=9% Similarity=-0.112 Sum_probs=19.7
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+..++++|+||+|||||+++|.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~ 121 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALL 121 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHH
Confidence 34567899999999999999986
No 454
>PRK05748 replicative DNA helicase; Provisional
Probab=95.23 E-value=0.012 Score=56.36 Aligned_cols=39 Identities=10% Similarity=0.064 Sum_probs=32.8
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
-..-|+++.|=++||++++|-||||.|||||.--++.=+
T Consensus 189 G~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~ 227 (448)
T PRK05748 189 GFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNV 227 (448)
T ss_pred ChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHH
Confidence 355688888778999999999999999999987776543
No 455
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.22 E-value=0.018 Score=55.68 Aligned_cols=35 Identities=6% Similarity=-0.105 Sum_probs=31.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+++++ -.+..|+.+.+.|++|+||||||+.|+-
T Consensus 150 i~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~ 184 (439)
T PRK06936 150 VRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIR 184 (439)
T ss_pred cceeeee-EEecCCCEEEEECCCCCChHHHHHHHhc
Confidence 5589999 8899999999999999999999999874
No 456
>PLN02165 adenylate isopentenyltransferase
Probab=95.21 E-value=0.014 Score=54.58 Aligned_cols=26 Identities=12% Similarity=-0.299 Sum_probs=22.0
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
++|+++.|+||+|||||||.+.|+-.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHH
Confidence 35668999999999999999988754
No 457
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.20 E-value=0.02 Score=53.27 Aligned_cols=29 Identities=7% Similarity=-0.223 Sum_probs=24.3
Q ss_pred eEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 192 GILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
|=+.+|++|+|.||||||||||.-.+..-
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~ 78 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAE 78 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45779999999999999999997766543
No 458
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.16 E-value=0.016 Score=56.92 Aligned_cols=34 Identities=9% Similarity=-0.056 Sum_probs=29.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+++|+.-.+ +|.++.|.|+|||||||+.|.|+
T Consensus 272 ~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la 305 (512)
T PRK13477 272 TRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVA 305 (512)
T ss_pred eEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHH
Confidence 44789986644 88999999999999999999997
No 459
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=95.14 E-value=0.015 Score=51.41 Aligned_cols=21 Identities=5% Similarity=-0.045 Sum_probs=19.5
Q ss_pred eEEEEecCCCCCchhHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~ 218 (231)
.++.++|+||.|||||++.|.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~ 141 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALD 141 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 588999999999999999986
No 460
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.14 E-value=0.0073 Score=50.48 Aligned_cols=24 Identities=13% Similarity=-0.020 Sum_probs=20.1
Q ss_pred CeEEEEecCCCCCchhHHHHHHHH
Q 037424 197 GSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+..+.++|.||+|||||+++|+-.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHh
Confidence 345778899999999999999753
No 461
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=95.14 E-value=0.016 Score=55.84 Aligned_cols=35 Identities=3% Similarity=-0.121 Sum_probs=31.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
...|+++ -.+..|+.+.++|++|+|||||+++|.-
T Consensus 145 i~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~ 179 (434)
T PRK08472 145 VKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVK 179 (434)
T ss_pred hHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4478888 7888999999999999999999999863
No 462
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.13 E-value=0.014 Score=54.45 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=29.8
Q ss_pred ccc-ceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424 187 LNR-VSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 187 L~d-VSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
|+. +.|=+.+|++|.|-|+||+|||+|.-.|+.-+.
T Consensus 112 LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~ 148 (342)
T PLN03186 112 LDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQ 148 (342)
T ss_pred HHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhh
Confidence 555 467788999999999999999999977765443
No 463
>PRK06321 replicative DNA helicase; Provisional
Probab=95.12 E-value=0.012 Score=57.27 Aligned_cols=38 Identities=5% Similarity=-0.022 Sum_probs=32.5
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
-..-|+++.|=++||++++|.||||.|||+|.--|+.-
T Consensus 212 G~~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~ 249 (472)
T PRK06321 212 HFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAEN 249 (472)
T ss_pred CcHHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 35668999888999999999999999999997776543
No 464
>PRK08006 replicative DNA helicase; Provisional
Probab=95.12 E-value=0.014 Score=56.62 Aligned_cols=40 Identities=13% Similarity=0.055 Sum_probs=34.3
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.-..-|++++|=++||+++.|-||||.|||||.--|+.-+
T Consensus 209 TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~ 248 (471)
T PRK08006 209 TGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENA 248 (471)
T ss_pred CCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4466799998889999999999999999999977776544
No 465
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.10 E-value=0.02 Score=54.90 Aligned_cols=35 Identities=6% Similarity=-0.077 Sum_probs=31.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+++++ -.+.+|+.+.+.|++|+||||||+.|+-
T Consensus 125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~ 159 (413)
T TIGR03497 125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIAR 159 (413)
T ss_pred ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5678889 8899999999999999999999997763
No 466
>PRK13764 ATPase; Provisional
Probab=95.08 E-value=0.015 Score=58.27 Aligned_cols=25 Identities=12% Similarity=-0.214 Sum_probs=21.2
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+.-.||-|+|||||||||++|.-
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~ 279 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAE 279 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHH
Confidence 4556789999999999999999663
No 467
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=95.07 E-value=0.023 Score=54.88 Aligned_cols=38 Identities=11% Similarity=-0.072 Sum_probs=34.0
Q ss_pred cccccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 181 EAKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 181 k~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.......++||-.+++|+.+.|.|.+|||||||=.+|.
T Consensus 297 ~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~all 334 (534)
T COG4172 297 VDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALL 334 (534)
T ss_pred chheEEeccceeEecCCCeEEEEecCCCCcchHHHHHH
Confidence 34577899999999999999999999999999987764
No 468
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.03 E-value=0.016 Score=53.68 Aligned_cols=25 Identities=8% Similarity=-0.230 Sum_probs=20.3
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.|..=+|+.||||+|||++.|+++-
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~ 178 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAH 178 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3444578889999999999999863
No 469
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=95.02 E-value=0.022 Score=56.57 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=34.7
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHHHHhh
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLWCLHA 227 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~~~~~ 227 (231)
+....+-.|+||-=+|+.||.|+|||+|+++|. -||-.|.
T Consensus 497 vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILg--gLWPvy~ 536 (728)
T KOG0064|consen 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILG--GLWPVYN 536 (728)
T ss_pred eecceeEEecCCceEEEECCCCccHHHHHHHHh--ccCcccC
Confidence 678899999999999999999999999999975 4565553
No 470
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.99 E-value=0.019 Score=52.95 Aligned_cols=32 Identities=9% Similarity=-0.098 Sum_probs=26.6
Q ss_pred eeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424 191 SGILKPGSVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
.|=|.+|.+|+|-|+||||||+|.-.+++-+.
T Consensus 90 gGGi~~G~iteI~G~~GsGKTql~lqla~~~~ 121 (313)
T TIGR02238 90 GGGIESMSITEVFGEFRCGKTQLSHTLCVTAQ 121 (313)
T ss_pred CCCCcCCeEEEEECCCCCCcCHHHHHHHHHHh
Confidence 45577999999999999999999977766443
No 471
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.97 E-value=0.017 Score=51.15 Aligned_cols=21 Identities=14% Similarity=-0.148 Sum_probs=18.4
Q ss_pred EEEecCCCCCchhHHHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~~~ 220 (231)
+++.||||+||||+.+.++-.
T Consensus 45 vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 578899999999999999754
No 472
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.95 E-value=0.02 Score=45.76 Aligned_cols=20 Identities=5% Similarity=-0.170 Sum_probs=18.3
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
.++++|+||+|||||+++|.
T Consensus 85 ~~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALV 104 (141)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999999984
No 473
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.85 E-value=0.019 Score=55.94 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=20.2
Q ss_pred eCCeEEEEecCCCCCchhHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L 217 (231)
+|+-|+||-||+||||||+|+++
T Consensus 240 ~~~GlilitGptGSGKTTtL~a~ 262 (486)
T TIGR02533 240 RPHGIILVTGPTGSGKTTTLYAA 262 (486)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHH
Confidence 45568999999999999999975
No 474
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.84 E-value=0.019 Score=58.27 Aligned_cols=26 Identities=8% Similarity=-0.199 Sum_probs=23.5
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++|++-+|+.||||+|||||+++|+=
T Consensus 209 i~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 209 IEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred CCCCceEEEECCCCCChHHHHHHHHH
Confidence 57888999999999999999999864
No 475
>PRK06904 replicative DNA helicase; Validated
Probab=94.84 E-value=0.021 Score=55.51 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=32.7
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
-..-|+++.|=++||++++|-||||.|||+|.--++.-+
T Consensus 207 G~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~ 245 (472)
T PRK06904 207 GFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENA 245 (472)
T ss_pred ChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 356688888889999999999999999999986665543
No 476
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.82 E-value=0.021 Score=57.26 Aligned_cols=26 Identities=4% Similarity=-0.354 Sum_probs=22.9
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
=.++++++++||||+|||||-+.|+=
T Consensus 100 ~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 100 EEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred CCCCceEEEecCCCCCchHHHHHHHH
Confidence 34778999999999999999999874
No 477
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.81 E-value=0.023 Score=53.17 Aligned_cols=31 Identities=10% Similarity=-0.061 Sum_probs=26.7
Q ss_pred eeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 191 SGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.|=|.+|.+|.|-|+||||||+|.-.+++-+
T Consensus 120 gGGi~~G~ItEI~G~~GsGKTql~lqlav~~ 150 (344)
T PLN03187 120 GGGIETRCITEAFGEFRSGKTQLAHTLCVTT 150 (344)
T ss_pred CCCCCCCeEEEEecCCCCChhHHHHHHHHHH
Confidence 4568899999999999999999997776654
No 478
>PRK12288 GTPase RsgA; Reviewed
Probab=94.80 E-value=0.016 Score=54.19 Aligned_cols=21 Identities=5% Similarity=0.032 Sum_probs=18.8
Q ss_pred eEEEEecCCCCCchhHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~ 218 (231)
.++.++|+||.|||||+++|.
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll 226 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALL 226 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhc
Confidence 467899999999999999984
No 479
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.80 E-value=0.024 Score=51.79 Aligned_cols=31 Identities=13% Similarity=-0.076 Sum_probs=25.9
Q ss_pred eeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 191 SGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.|=+.+|.+|+|.|+||||||+|.--++.-+
T Consensus 96 ~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 96 GGGIETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred cCCccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 4556789999999999999999988776544
No 480
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.78 E-value=0.023 Score=56.39 Aligned_cols=24 Identities=13% Similarity=-0.108 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCCCchhHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+++|+||-||+|+||||.+|+|+=
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHH
Confidence 578999999999999999999874
No 481
>PLN02674 adenylate kinase
Probab=94.69 E-value=0.025 Score=50.56 Aligned_cols=21 Identities=0% Similarity=-0.488 Sum_probs=17.7
Q ss_pred EEEEecCCCCCchhHHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~~ 219 (231)
-.+|+|+|||||+|.-+.|+=
T Consensus 33 ~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 33 RLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999887753
No 482
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.69 E-value=0.022 Score=54.98 Aligned_cols=26 Identities=8% Similarity=-0.189 Sum_probs=22.7
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++|++=+|+.||||+|||++.|+++-
T Consensus 214 i~~p~gVLL~GPPGTGKT~LAraIA~ 239 (438)
T PTZ00361 214 IKPPKGVILYGPPGTGKTLLAKAVAN 239 (438)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46777788999999999999999875
No 483
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.68 E-value=0.036 Score=53.71 Aligned_cols=27 Identities=7% Similarity=-0.066 Sum_probs=23.1
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.|+.+++|.|+.||||||+|.+|....
T Consensus 25 ~~~g~~~i~G~NG~GKStll~aI~~~l 51 (562)
T PHA02562 25 DKVKKTLITGKNGAGKSTMLEALTFAL 51 (562)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 345699999999999999999998654
No 484
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.65 E-value=0.025 Score=51.67 Aligned_cols=29 Identities=7% Similarity=-0.298 Sum_probs=25.4
Q ss_pred eeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 191 SGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+-.+.|+....|.|.|||||||+-+.|+-
T Consensus 127 ~~~~~~~~~I~l~G~~GsGKStvg~~La~ 155 (309)
T PRK08154 127 GRRAARRRRIALIGLRGAGKSTLGRMLAA 155 (309)
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 44578999999999999999999999863
No 485
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.64 E-value=0.024 Score=53.44 Aligned_cols=20 Identities=10% Similarity=-0.194 Sum_probs=17.8
Q ss_pred eEEEEecCCCCCchhHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L 217 (231)
++++++||+|+|||||...|
T Consensus 89 rIl~L~GPvg~GKSsl~~~L 108 (358)
T PF08298_consen 89 RILLLLGPVGGGKSSLAELL 108 (358)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999998876
No 486
>PRK12289 GTPase RsgA; Reviewed
Probab=94.63 E-value=0.021 Score=53.48 Aligned_cols=21 Identities=5% Similarity=0.034 Sum_probs=18.9
Q ss_pred eEEEEecCCCCCchhHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~ 218 (231)
.++.++|+||.|||||++.|.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~ 193 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLI 193 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHc
Confidence 368999999999999999985
No 487
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.61 E-value=0.027 Score=48.29 Aligned_cols=27 Identities=7% Similarity=-0.253 Sum_probs=22.7
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.+++-+++.|+||+|||+|+++++--+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456778999999999999999987543
No 488
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.59 E-value=0.018 Score=55.72 Aligned_cols=31 Identities=19% Similarity=0.046 Sum_probs=24.4
Q ss_pred ccc-ceeEEeCCeEEEEecCCCCCchhHHHHH
Q 037424 187 LNR-VSGILKPGSVNLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 187 L~d-VSGiiKPGeMTLVLGrPGSGcSTlLK~L 217 (231)
|+. +.|=+-||..|||.|+||+|||||.--.
T Consensus 252 lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f 283 (484)
T TIGR02655 252 LDEMCGGGFFKDSIILATGATGTGKTLLVSKF 283 (484)
T ss_pred HHHHhcCCccCCcEEEEECCCCCCHHHHHHHH
Confidence 444 3455789999999999999999976443
No 489
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.59 E-value=0.024 Score=55.00 Aligned_cols=33 Identities=12% Similarity=0.011 Sum_probs=27.2
Q ss_pred ccccce-eEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 186 ILNRVS-GILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 186 IL~dVS-GiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
=|+++- |=+.+|+++||.|+||+|||||...++
T Consensus 19 ~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~ 52 (509)
T PRK09302 19 GFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFL 52 (509)
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 466663 568899999999999999999987664
No 490
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.53 E-value=0.036 Score=55.57 Aligned_cols=32 Identities=9% Similarity=-0.048 Sum_probs=24.4
Q ss_pred cceeEEeCCe-EEEEecCCCCCchhHHHHHHHH
Q 037424 189 RVSGILKPGS-VNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 189 dVSGiiKPGe-MTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.|+-...+|+ +++|.|+.||||||||+++.++
T Consensus 19 ~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~ 51 (650)
T TIGR03185 19 TFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLA 51 (650)
T ss_pred eeeeecCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3333334444 8899999999999999999764
No 491
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=94.51 E-value=0.07 Score=51.67 Aligned_cols=35 Identities=6% Similarity=-0.146 Sum_probs=30.7
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L 217 (231)
...++++||--|++||.+.|.|-+|||||-...++
T Consensus 22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~si 56 (534)
T COG4172 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSI 56 (534)
T ss_pred ceEeeccceeeecCCCEEEEEecCCCCccHHHHHH
Confidence 35689999999999999999999999999765554
No 492
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.43 E-value=0.03 Score=53.75 Aligned_cols=34 Identities=9% Similarity=-0.081 Sum_probs=29.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.+++ .+-.+.+|+.+.|+|++|+||||||+.|.
T Consensus 128 i~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~ 161 (418)
T TIGR03498 128 VRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLA 161 (418)
T ss_pred cEEEe-eeccccCCcEEEEECCCCCChHHHHHHHh
Confidence 34554 68899999999999999999999999876
No 493
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.42 E-value=0.028 Score=45.29 Aligned_cols=27 Identities=30% Similarity=0.134 Sum_probs=23.2
Q ss_pred EEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 193 ILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 193 iiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.++||.+.++=|+=|||||||-|.|+-
T Consensus 11 ~l~~g~vi~L~GdLGaGKTtf~r~l~~ 37 (123)
T PF02367_consen 11 ILKPGDVILLSGDLGAGKTTFVRGLAR 37 (123)
T ss_dssp HHSS-EEEEEEESTTSSHHHHHHHHHH
T ss_pred hCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999998764
No 494
>PRK08840 replicative DNA helicase; Provisional
Probab=94.40 E-value=0.027 Score=54.62 Aligned_cols=39 Identities=10% Similarity=-0.023 Sum_probs=32.2
Q ss_pred ccccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 182 AKINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 182 ~~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+-.+-|+.+.|=++||++++|-||||.|||||.=-|+.-
T Consensus 202 TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~ 240 (464)
T PRK08840 202 TGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCEN 240 (464)
T ss_pred CCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHH
Confidence 446679998877999999999999999999998544443
No 495
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.37 E-value=0.046 Score=52.30 Aligned_cols=28 Identities=11% Similarity=-0.253 Sum_probs=25.0
Q ss_pred EEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 193 ILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 193 iiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+.+|+++++.||+|+||||++..|+.-
T Consensus 202 ~~~~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 202 DLSNHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999998853
No 496
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.36 E-value=0.04 Score=49.73 Aligned_cols=27 Identities=15% Similarity=-0.080 Sum_probs=22.4
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
+.|+..+++||+|+||||++..|+.-+
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999998776543
No 497
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=94.35 E-value=0.031 Score=57.41 Aligned_cols=23 Identities=13% Similarity=-0.100 Sum_probs=19.9
Q ss_pred EEEEecCCCCCchhHHHHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
-++|+|+||||||||++.|..-+
T Consensus 443 n~~I~G~tGsGKS~l~~~l~~~~ 465 (811)
T PRK13873 443 HTLVVGPTGAGKSVLLALMALQF 465 (811)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999966543
No 498
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.34 E-value=0.027 Score=61.61 Aligned_cols=35 Identities=6% Similarity=-0.258 Sum_probs=27.7
Q ss_pred ccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHH
Q 037424 188 NRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLW 223 (231)
Q Consensus 188 ~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~ 223 (231)
.+.+-.+.|| +++|+|+.||||||+|++|..+..+
T Consensus 19 ~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~ 53 (1486)
T PRK04863 19 FARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIP 53 (1486)
T ss_pred cceEEEecCC-eEEEECCCCCCHHHHHHHHHccccC
Confidence 3445556666 8899999999999999999876654
No 499
>PRK06820 type III secretion system ATPase; Validated
Probab=94.26 E-value=0.044 Score=53.01 Aligned_cols=35 Identities=9% Similarity=-0.070 Sum_probs=31.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+|+++ -.+..|+-++++|++|+|||||++.|+-
T Consensus 151 i~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~ 185 (440)
T PRK06820 151 IRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCA 185 (440)
T ss_pred Cceecce-EEecCCCEEEEECCCCCChHHHHHHHhc
Confidence 5678888 8899999999999999999999997753
No 500
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.23 E-value=0.031 Score=54.56 Aligned_cols=27 Identities=22% Similarity=0.068 Sum_probs=21.8
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+..--.|+ ||-|+||+|||||-++|+=
T Consensus 259 L~eraeGI-------LIAG~PGaGKsTFaqAlAe 285 (604)
T COG1855 259 LEERAEGI-------LIAGAPGAGKSTFAQALAE 285 (604)
T ss_pred HHhhhcce-------EEecCCCCChhHHHHHHHH
Confidence 44456776 5999999999999999864
Done!