Query 037424
Match_columns 231
No_of_seqs 224 out of 1180
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 20:47:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 98.7 1.8E-08 6.2E-13 86.7 6.0 36 184-219 18-53 (235)
2 4g1u_C Hemin import ATP-bindin 98.6 4.2E-08 1.4E-12 86.2 5.5 36 184-219 24-59 (266)
3 2zu0_C Probable ATP-dependent 98.6 4.4E-08 1.5E-12 85.9 5.3 37 184-220 33-69 (267)
4 2pcj_A ABC transporter, lipopr 98.6 2.7E-08 9.4E-13 84.9 3.3 36 184-219 17-52 (224)
5 1mv5_A LMRA, multidrug resista 98.5 3.9E-08 1.3E-12 84.8 3.5 35 184-218 15-49 (243)
6 2cbz_A Multidrug resistance-as 98.5 3.8E-08 1.3E-12 84.8 3.2 35 184-218 18-52 (237)
7 2d2e_A SUFC protein; ABC-ATPas 98.5 5E-08 1.7E-12 84.6 3.8 37 184-220 16-52 (250)
8 2ff7_A Alpha-hemolysin translo 98.5 4.2E-08 1.4E-12 85.1 3.3 36 184-219 22-57 (247)
9 2pze_A Cystic fibrosis transme 98.5 4.6E-08 1.6E-12 83.8 3.4 35 184-218 21-55 (229)
10 1ji0_A ABC transporter; ATP bi 98.5 4.6E-08 1.6E-12 84.4 3.3 36 184-219 19-54 (240)
11 1g6h_A High-affinity branched- 98.5 3.9E-08 1.3E-12 85.6 2.9 35 185-219 21-55 (257)
12 1b0u_A Histidine permease; ABC 98.5 4.6E-08 1.6E-12 85.6 3.2 36 184-219 19-54 (262)
13 3tui_C Methionine import ATP-b 98.5 1.5E-07 5.1E-12 86.9 6.4 38 183-220 40-77 (366)
14 1sgw_A Putative ABC transporte 98.5 5.1E-08 1.7E-12 83.2 2.9 34 185-218 23-56 (214)
15 2olj_A Amino acid ABC transpor 98.5 5.5E-08 1.9E-12 85.5 3.2 36 184-219 37-72 (263)
16 1vpl_A ABC transporter, ATP-bi 98.5 5.7E-08 1.9E-12 85.0 3.2 36 184-219 28-63 (256)
17 2ixe_A Antigen peptide transpo 98.5 5.9E-08 2E-12 85.4 3.2 36 184-219 32-67 (271)
18 3gfo_A Cobalt import ATP-bindi 98.5 6.2E-08 2.1E-12 85.7 3.3 35 185-219 22-56 (275)
19 2ghi_A Transport protein; mult 98.5 6E-08 2.1E-12 84.7 3.2 36 184-219 33-68 (260)
20 2ihy_A ABC transporter, ATP-bi 98.5 6.8E-08 2.3E-12 85.5 3.4 35 184-218 34-68 (279)
21 2nq2_C Hypothetical ABC transp 98.5 7.1E-08 2.4E-12 84.1 3.4 35 184-218 18-52 (253)
22 2yz2_A Putative ABC transporte 98.5 6.6E-08 2.2E-12 84.7 3.1 36 184-219 20-55 (266)
23 2qi9_C Vitamin B12 import ATP- 98.4 7.6E-08 2.6E-12 83.8 3.4 34 185-218 14-47 (249)
24 1z47_A CYSA, putative ABC-tran 98.4 1.6E-07 5.3E-12 86.3 3.9 36 184-219 28-63 (355)
25 3fvq_A Fe(3+) IONS import ATP- 98.4 1.4E-07 4.9E-12 86.8 3.5 36 184-219 17-52 (359)
26 1cr0_A DNA primase/helicase; R 98.4 1.1E-07 3.6E-12 83.1 2.2 40 183-222 21-60 (296)
27 2yyz_A Sugar ABC transporter, 98.3 1.9E-07 6.5E-12 85.8 3.7 36 184-219 16-51 (359)
28 2bbs_A Cystic fibrosis transme 98.3 1.6E-07 5.5E-12 83.7 3.1 35 184-218 51-85 (290)
29 1g29_1 MALK, maltose transport 98.3 2.1E-07 7.2E-12 85.8 3.8 36 184-219 16-51 (372)
30 3rlf_A Maltose/maltodextrin im 98.3 2.1E-07 7.1E-12 86.3 3.7 36 184-219 16-51 (381)
31 2it1_A 362AA long hypothetical 98.3 2.2E-07 7.7E-12 85.4 3.7 36 184-219 16-51 (362)
32 1v43_A Sugar-binding transport 98.3 2.3E-07 7.9E-12 85.6 3.7 36 184-219 24-59 (372)
33 3nh6_A ATP-binding cassette SU 98.3 1.5E-07 5.2E-12 84.6 1.8 34 185-218 68-101 (306)
34 1htw_A HI0065; nucleotide-bind 98.3 1.5E-07 5.1E-12 76.7 1.3 37 184-220 20-56 (158)
35 3gd7_A Fusion complex of cysti 98.3 3.1E-07 1.1E-11 85.2 3.6 36 184-219 34-69 (390)
36 2pjz_A Hypothetical protein ST 98.3 2.7E-07 9.4E-12 81.0 3.0 35 184-219 18-52 (263)
37 1oxx_K GLCV, glucose, ABC tran 98.3 1.9E-07 6.7E-12 85.4 1.8 34 186-219 20-53 (353)
38 3d31_A Sulfate/molybdate ABC t 98.3 2.6E-07 9E-12 84.5 2.4 34 186-219 15-48 (348)
39 2ehv_A Hypothetical protein PH 98.2 6E-07 2E-11 74.9 3.5 34 187-220 19-53 (251)
40 2v9p_A Replication protein E1; 98.2 2E-07 7E-12 83.9 0.5 37 184-220 113-149 (305)
41 3lnc_A Guanylate kinase, GMP k 98.1 9.6E-07 3.3E-11 74.2 2.8 35 184-218 14-48 (231)
42 2yl4_A ATP-binding cassette SU 98.1 1.3E-06 4.6E-11 84.1 3.5 35 184-218 357-391 (595)
43 3b60_A Lipid A export ATP-bind 98.1 1.3E-06 4.4E-11 84.1 3.1 35 184-218 356-390 (582)
44 3b5x_A Lipid A export ATP-bind 98.1 1.6E-06 5.5E-11 83.4 3.8 36 184-219 356-391 (582)
45 1tf7_A KAIC; homohexamer, hexa 98.1 1.2E-06 4.1E-11 83.2 2.4 38 183-220 24-62 (525)
46 3qf4_B Uncharacterized ABC tra 98.0 2E-06 6.7E-11 83.2 3.4 35 184-218 368-402 (598)
47 2iw3_A Elongation factor 3A; a 98.0 1.2E-05 4E-10 82.5 8.9 35 184-218 448-482 (986)
48 1yqt_A RNAse L inhibitor; ATP- 98.0 2E-06 6.8E-11 82.5 2.7 34 185-219 36-69 (538)
49 4a82_A Cystic fibrosis transme 98.0 1.7E-06 5.8E-11 83.2 2.1 35 184-218 354-388 (578)
50 3qf4_A ABC transporter, ATP-bi 98.0 2.1E-06 7.1E-11 82.9 2.3 35 184-218 356-390 (587)
51 3bk7_A ABC transporter ATP-bin 97.9 3E-06 1E-10 82.6 2.2 34 185-219 106-139 (607)
52 2qm8_A GTPase/ATPase; G protei 97.9 2.6E-06 9E-11 76.9 1.5 37 184-220 42-78 (337)
53 3ux8_A Excinuclease ABC, A sub 97.9 5E-06 1.7E-10 81.1 3.3 35 184-218 335-369 (670)
54 2qag_B Septin-6, protein NEDD5 97.9 2.8E-06 9.5E-11 79.9 1.3 34 187-220 30-65 (427)
55 2gza_A Type IV secretion syste 97.8 2.1E-06 7.1E-11 78.2 -0.2 33 186-218 164-196 (361)
56 2pt7_A CAG-ALFA; ATPase, prote 97.8 1.4E-06 4.6E-11 78.7 -1.8 33 186-218 160-192 (330)
57 1tq4_A IIGP1, interferon-induc 97.8 2.9E-06 9.8E-11 79.3 -0.4 36 183-218 35-90 (413)
58 3bk7_A ABC transporter ATP-bin 97.8 1.2E-05 4.2E-10 78.2 3.7 34 186-219 371-404 (607)
59 2iw3_A Elongation factor 3A; a 97.8 6.6E-06 2.2E-10 84.4 1.9 36 184-219 686-721 (986)
60 4f4c_A Multidrug resistance pr 97.7 1.1E-05 3.9E-10 84.6 3.6 35 184-218 1092-1126(1321)
61 2ewv_A Twitching motility prot 97.7 7.3E-06 2.5E-10 75.0 1.8 33 186-220 127-159 (372)
62 1svm_A Large T antigen; AAA+ f 97.7 6.2E-06 2.1E-10 76.1 0.9 36 184-219 156-191 (377)
63 1yqt_A RNAse L inhibitor; ATP- 97.7 1.6E-05 5.6E-10 76.1 3.7 33 186-218 301-333 (538)
64 3ux8_A Excinuclease ABC, A sub 97.7 1.6E-05 5.4E-10 77.6 3.5 32 183-214 30-61 (670)
65 3ozx_A RNAse L inhibitor; ATP 97.7 1.5E-05 5.2E-10 76.5 3.2 33 186-218 283-315 (538)
66 3g5u_A MCG1178, multidrug resi 97.7 1.4E-05 4.9E-10 83.6 2.8 35 184-218 403-437 (1284)
67 3euj_A Chromosome partition pr 97.7 2.1E-05 7.3E-10 74.9 3.8 36 184-220 17-52 (483)
68 4f4c_A Multidrug resistance pr 97.7 1.8E-05 6.2E-10 83.1 3.6 35 184-218 431-465 (1321)
69 4eun_A Thermoresistant glucoki 97.7 1.9E-05 6.6E-10 64.9 3.0 26 194-219 26-51 (200)
70 1nlf_A Regulatory protein REPA 97.7 1.9E-05 6.4E-10 68.3 3.1 28 193-220 26-53 (279)
71 1pzn_A RAD51, DNA repair and r 97.7 1.3E-05 4.6E-10 72.6 2.2 35 186-220 119-154 (349)
72 2x8a_A Nuclear valosin-contain 97.7 9.1E-06 3.1E-10 71.1 1.0 34 184-219 33-66 (274)
73 1p9r_A General secretion pathw 97.6 1.2E-05 4E-10 75.2 1.3 34 184-219 156-189 (418)
74 3thx_A DNA mismatch repair pro 97.6 2.5E-05 8.5E-10 79.7 3.6 40 184-223 649-688 (934)
75 4aby_A DNA repair protein RECN 97.6 8.9E-06 3E-10 73.8 0.1 37 184-221 48-84 (415)
76 3g5u_A MCG1178, multidrug resi 97.6 2.9E-05 1E-09 81.3 3.9 35 184-218 1046-1080(1284)
77 3thx_B DNA mismatch repair pro 97.6 1.7E-05 5.9E-10 80.8 1.9 40 184-223 660-699 (918)
78 3nwj_A ATSK2; P loop, shikimat 97.6 7.6E-06 2.6E-10 71.3 -0.7 36 184-219 32-70 (250)
79 3kta_A Chromosome segregation 97.6 4.8E-05 1.6E-09 61.0 3.9 33 188-221 18-50 (182)
80 3j16_B RLI1P; ribosome recycli 97.6 2.6E-05 8.9E-10 76.1 2.7 33 186-219 93-125 (608)
81 1sq5_A Pantothenate kinase; P- 97.6 1.3E-05 4.6E-10 70.9 0.6 26 195-220 78-103 (308)
82 1wb9_A DNA mismatch repair pro 97.6 3.7E-05 1.3E-09 77.2 3.9 38 184-222 595-632 (800)
83 1ixz_A ATP-dependent metallopr 97.6 1.7E-05 5.8E-10 67.2 1.2 33 185-219 39-71 (254)
84 3jvv_A Twitching mobility prot 97.5 1.9E-05 6.5E-10 72.2 1.5 33 186-220 114-146 (356)
85 2kjq_A DNAA-related protein; s 97.5 3.8E-05 1.3E-09 61.3 2.9 34 183-221 27-60 (149)
86 2npi_A Protein CLP1; CLP1-PCF1 97.5 1.7E-05 5.9E-10 74.8 0.5 34 188-221 129-162 (460)
87 3aez_A Pantothenate kinase; tr 97.5 5.1E-05 1.7E-09 67.9 3.5 27 194-220 87-113 (312)
88 1iy2_A ATP-dependent metallopr 97.5 2.2E-05 7.7E-10 67.7 1.2 35 184-220 62-96 (278)
89 2obl_A ESCN; ATPase, hydrolase 97.5 3.4E-05 1.2E-09 70.2 2.1 36 184-220 59-94 (347)
90 3ec2_A DNA replication protein 97.5 3.2E-05 1.1E-09 62.2 1.7 28 194-221 35-62 (180)
91 3b9q_A Chloroplast SRP recepto 97.4 5.3E-05 1.8E-09 67.5 2.9 33 188-220 91-123 (302)
92 3j16_B RLI1P; ribosome recycli 97.4 6.3E-05 2.2E-09 73.4 3.7 35 185-219 361-400 (608)
93 2dpy_A FLII, flagellum-specifi 97.4 3.4E-05 1.2E-09 72.3 1.6 36 184-220 145-180 (438)
94 2bbw_A Adenylate kinase 4, AK4 97.4 6.1E-05 2.1E-09 63.8 3.0 23 196-218 26-48 (246)
95 2oap_1 GSPE-2, type II secreti 97.4 1.7E-05 5.9E-10 75.7 -0.6 35 184-218 247-281 (511)
96 2r6a_A DNAB helicase, replicat 97.4 5.7E-05 1.9E-09 70.4 2.3 40 183-222 189-228 (454)
97 1lw7_A Transcriptional regulat 97.4 4.6E-05 1.6E-09 68.8 1.5 36 185-220 156-193 (365)
98 1in4_A RUVB, holliday junction 97.4 1.7E-05 5.7E-10 70.8 -1.4 36 185-220 32-74 (334)
99 1ewq_A DNA mismatch repair pro 97.3 8.8E-05 3E-09 74.2 3.5 36 184-222 566-601 (765)
100 1tf7_A KAIC; homohexamer, hexa 97.3 9E-05 3.1E-09 70.2 3.2 35 187-221 270-305 (525)
101 1pui_A ENGB, probable GTP-bind 97.3 4.5E-05 1.6E-09 61.8 1.0 32 185-218 16-47 (210)
102 2o8b_B DNA mismatch repair pro 97.3 0.0001 3.4E-09 75.9 3.6 39 184-222 769-814 (1022)
103 3lda_A DNA repair protein RAD5 97.3 6.9E-05 2.4E-09 69.5 2.0 35 187-221 167-202 (400)
104 2yhs_A FTSY, cell division pro 97.3 0.00012 4E-09 70.3 3.4 33 188-220 284-316 (503)
105 2o5v_A DNA replication and rep 97.2 0.0002 7E-09 65.5 4.0 36 185-221 15-50 (359)
106 4e22_A Cytidylate kinase; P-lo 97.2 0.00012 4E-09 62.9 2.2 30 186-218 19-48 (252)
107 3bh0_A DNAB-like replicative h 97.2 0.00012 4.2E-09 65.0 2.3 38 184-221 55-92 (315)
108 2og2_A Putative signal recogni 97.2 0.00019 6.6E-09 65.7 3.4 32 189-220 149-180 (359)
109 2ygr_A Uvrabc system protein A 97.2 0.00013 4.6E-09 74.8 2.6 34 185-218 656-689 (993)
110 3pih_A Uvrabc system protein A 97.2 0.0003 1E-08 71.7 5.1 43 184-226 597-640 (916)
111 2vf7_A UVRA2, excinuclease ABC 97.1 8.9E-05 3E-09 75.0 0.8 35 184-218 510-545 (842)
112 2r6f_A Excinuclease ABC subuni 97.1 0.00013 4.4E-09 74.8 2.0 34 185-218 638-671 (972)
113 3hr8_A Protein RECA; alpha and 97.1 0.00028 9.6E-09 64.6 3.5 30 192-221 56-85 (356)
114 1rj9_A FTSY, signal recognitio 97.0 0.00035 1.2E-08 62.3 3.4 25 196-220 101-125 (304)
115 2rcn_A Probable GTPase ENGC; Y 97.0 0.0003 1E-08 64.6 2.9 31 187-218 206-236 (358)
116 3e70_C DPA, signal recognition 97.0 0.00042 1.4E-08 62.6 3.8 26 195-220 127-152 (328)
117 1u0l_A Probable GTPase ENGC; p 97.0 0.0003 1E-08 62.1 2.7 23 196-218 168-190 (301)
118 4a1f_A DNAB helicase, replicat 97.0 0.00026 8.8E-09 64.5 2.3 38 184-221 33-70 (338)
119 2p5t_B PEZT; postsegregational 97.0 0.00027 9.1E-09 60.5 2.2 33 186-219 22-54 (253)
120 1udx_A The GTP-binding protein 97.0 0.00024 8.3E-09 66.2 2.1 32 187-218 147-178 (416)
121 2yv5_A YJEQ protein; hydrolase 97.0 0.00034 1.2E-08 61.9 2.9 23 196-218 164-186 (302)
122 1sxj_C Activator 1 40 kDa subu 97.0 0.00011 3.8E-09 65.1 -0.3 38 184-221 31-70 (340)
123 1t9h_A YLOQ, probable GTPase E 96.9 0.0001 3.6E-09 66.2 -0.6 24 195-218 171-194 (307)
124 2p67_A LAO/AO transport system 96.9 0.00022 7.6E-09 64.0 1.3 37 184-220 43-79 (341)
125 2qag_C Septin-7; cell cycle, c 96.9 0.00041 1.4E-08 64.7 3.1 29 184-218 24-52 (418)
126 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00069 2.3E-08 53.9 3.9 27 194-221 21-47 (149)
127 2zr9_A Protein RECA, recombina 96.9 0.0005 1.7E-08 62.4 3.3 30 192-221 56-85 (349)
128 2q6t_A DNAB replication FORK h 96.8 0.00043 1.5E-08 64.2 2.3 39 184-222 187-225 (444)
129 2www_A Methylmalonic aciduria 96.8 0.00062 2.1E-08 61.5 3.2 25 195-219 72-96 (349)
130 1lv7_A FTSH; alpha/beta domain 96.8 0.00048 1.7E-08 58.2 2.4 31 187-219 37-67 (257)
131 3m6a_A ATP-dependent protease 96.8 0.00033 1.1E-08 66.9 1.5 36 185-221 97-132 (543)
132 1v5w_A DMC1, meiotic recombina 96.8 0.00061 2.1E-08 61.2 3.0 34 187-220 111-145 (343)
133 2dhr_A FTSH; AAA+ protein, hex 96.8 0.00047 1.6E-08 65.8 2.3 34 185-220 54-87 (499)
134 2zts_A Putative uncharacterize 96.7 0.00072 2.5E-08 55.9 3.0 35 185-219 17-52 (251)
135 1zu4_A FTSY; GTPase, signal re 96.7 0.00069 2.4E-08 60.8 3.0 35 186-220 94-128 (320)
136 1w1w_A Structural maintenance 96.7 0.00068 2.3E-08 62.4 2.5 30 194-223 23-52 (430)
137 3tqc_A Pantothenate kinase; bi 96.6 0.00037 1.3E-08 62.9 0.7 22 199-220 94-115 (321)
138 2z43_A DNA repair and recombin 96.6 0.00057 1.9E-08 60.7 1.8 35 186-220 95-130 (324)
139 4eaq_A DTMP kinase, thymidylat 96.6 0.00098 3.3E-08 56.6 3.1 26 194-219 23-48 (229)
140 2i1q_A DNA repair and recombin 96.6 0.00077 2.6E-08 59.4 2.3 35 186-220 86-121 (322)
141 1gvn_B Zeta; postsegregational 96.6 0.0012 4.1E-08 58.0 3.5 23 196-218 32-54 (287)
142 1oix_A RAS-related protein RAB 96.6 0.00088 3E-08 54.1 2.4 20 199-218 31-50 (191)
143 3k1j_A LON protease, ATP-depen 96.6 0.00034 1.1E-08 67.5 -0.2 37 184-220 47-83 (604)
144 3cf0_A Transitional endoplasmi 96.5 0.001 3.5E-08 58.2 2.7 26 194-219 46-71 (301)
145 3b9p_A CG5977-PA, isoform A; A 96.5 0.00088 3E-08 57.6 1.9 26 194-219 51-76 (297)
146 3cr8_A Sulfate adenylyltranfer 96.4 0.00072 2.5E-08 65.2 1.3 28 193-220 365-392 (552)
147 3umf_A Adenylate kinase; rossm 96.4 0.0014 4.8E-08 55.9 2.7 24 195-218 27-50 (217)
148 3bos_A Putative DNA replicatio 96.4 0.0017 5.8E-08 52.9 2.9 25 196-220 51-75 (242)
149 3bgw_A DNAB-like replicative h 96.3 0.0012 4.1E-08 61.7 2.1 39 183-221 183-221 (444)
150 1jbk_A CLPB protein; beta barr 96.3 0.002 6.9E-08 50.0 3.0 25 196-220 42-66 (195)
151 1vma_A Cell division protein F 96.2 0.0027 9.4E-08 56.6 3.7 28 194-221 101-128 (306)
152 3h4m_A Proteasome-activating n 96.2 0.002 6.8E-08 54.9 2.7 26 194-219 48-73 (285)
153 4ad8_A DNA repair protein RECN 96.1 0.0012 4.1E-08 62.4 0.9 36 184-220 48-83 (517)
154 2px0_A Flagellar biosynthesis 96.1 0.003 1E-07 55.9 3.3 26 195-220 103-128 (296)
155 1odf_A YGR205W, hypothetical 3 96.1 0.0031 1.1E-07 55.7 3.2 27 195-221 29-55 (290)
156 2qby_A CDC6 homolog 1, cell di 96.1 0.0024 8.1E-08 55.8 2.4 26 195-220 43-68 (386)
157 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.0021 7.2E-08 57.1 2.0 28 192-219 40-67 (322)
158 4fcw_A Chaperone protein CLPB; 96.0 0.0033 1.1E-07 54.0 3.1 26 196-221 46-71 (311)
159 1njg_A DNA polymerase III subu 96.0 0.0033 1.1E-07 50.3 2.9 24 198-221 46-69 (250)
160 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.0032 1.1E-07 52.6 2.8 25 195-219 37-61 (262)
161 1qhl_A Protein (cell division 96.0 0.00045 1.5E-08 59.4 -2.5 24 198-221 28-51 (227)
162 3tlx_A Adenylate kinase 2; str 96.0 0.0036 1.2E-07 53.2 3.1 23 196-218 28-50 (243)
163 2ged_A SR-beta, signal recogni 96.0 0.0031 1.1E-07 50.0 2.6 21 198-218 49-69 (193)
164 1u94_A RECA protein, recombina 96.0 0.0039 1.3E-07 56.8 3.5 35 187-221 51-87 (356)
165 3t15_A Ribulose bisphosphate c 95.9 0.0034 1.2E-07 54.9 2.7 26 194-219 33-58 (293)
166 1sxj_E Activator 1 40 kDa subu 95.9 0.0012 4E-08 58.0 -0.3 20 200-219 39-58 (354)
167 2vhj_A Ntpase P4, P4; non- hyd 95.9 0.0036 1.2E-07 57.0 2.9 28 192-219 118-145 (331)
168 3lxx_A GTPase IMAP family memb 95.8 0.0037 1.3E-07 52.2 2.6 19 200-218 32-50 (239)
169 1fnn_A CDC6P, cell division co 95.8 0.0041 1.4E-07 54.6 2.7 25 195-219 40-66 (389)
170 2p65_A Hypothetical protein PF 95.8 0.0036 1.2E-07 48.8 2.1 25 196-220 42-66 (187)
171 2ce7_A Cell division protein F 95.8 0.0027 9.4E-08 60.1 1.6 32 186-219 40-71 (476)
172 2w58_A DNAI, primosome compone 95.7 0.0051 1.7E-07 49.8 2.9 24 198-221 55-78 (202)
173 1q57_A DNA primase/helicase; d 95.7 0.0021 7.2E-08 60.2 0.7 37 184-220 229-265 (503)
174 2qag_A Septin-2, protein NEDD5 95.7 0.0029 9.8E-08 57.4 1.5 30 184-219 30-59 (361)
175 4ag6_A VIRB4 ATPase, type IV s 95.7 0.0056 1.9E-07 55.2 3.3 26 196-221 34-59 (392)
176 1ypw_A Transitional endoplasmi 95.7 0.0043 1.5E-07 62.1 2.6 27 193-219 234-260 (806)
177 1xp8_A RECA protein, recombina 95.6 0.0067 2.3E-07 55.5 3.3 30 192-221 69-98 (366)
178 1ls1_A Signal recognition part 95.5 0.0087 3E-07 52.7 3.8 32 188-221 91-122 (295)
179 1l8q_A Chromosomal replication 95.5 0.0048 1.6E-07 53.9 2.0 25 196-220 36-60 (324)
180 3uk6_A RUVB-like 2; hexameric 95.5 0.0064 2.2E-07 53.5 2.8 28 194-221 67-94 (368)
181 3syl_A Protein CBBX; photosynt 95.5 0.0067 2.3E-07 52.1 2.8 27 195-221 65-91 (309)
182 2v1u_A Cell division control p 95.4 0.0058 2E-07 53.4 2.3 26 195-220 42-67 (387)
183 2atv_A RERG, RAS-like estrogen 95.4 0.0069 2.4E-07 48.4 2.6 19 200-218 31-49 (196)
184 3t34_A Dynamin-related protein 95.4 0.0057 2E-07 54.7 2.2 32 184-218 24-55 (360)
185 2p5s_A RAS and EF-hand domain 95.3 0.0075 2.6E-07 48.4 2.5 20 199-218 30-49 (199)
186 3zvl_A Bifunctional polynucleo 95.3 0.0065 2.2E-07 56.0 2.4 23 196-218 257-279 (416)
187 3eie_A Vacuolar protein sortin 95.3 0.0061 2.1E-07 53.6 2.0 26 194-219 48-73 (322)
188 2chg_A Replication factor C sm 95.2 0.0084 2.9E-07 47.6 2.5 21 200-220 41-61 (226)
189 2il1_A RAB12; G-protein, GDP, 95.2 0.0082 2.8E-07 48.0 2.3 19 200-218 29-47 (192)
190 3szr_A Interferon-induced GTP- 95.2 0.0066 2.2E-07 58.8 1.9 21 200-220 48-68 (608)
191 3llm_A ATP-dependent RNA helic 95.1 0.0092 3.1E-07 49.9 2.4 27 195-221 74-100 (235)
192 2wsm_A Hydrogenase expression/ 95.1 0.01 3.6E-07 48.2 2.7 22 198-219 31-52 (221)
193 2zan_A Vacuolar protein sortin 95.1 0.007 2.4E-07 56.1 1.9 28 192-219 162-189 (444)
194 2b6h_A ADP-ribosylation factor 95.1 0.009 3.1E-07 48.0 2.2 18 200-217 32-49 (192)
195 1d2n_A N-ethylmaleimide-sensit 95.0 0.011 3.8E-07 50.3 2.8 26 195-220 62-87 (272)
196 2qp9_X Vacuolar protein sortin 95.0 0.008 2.7E-07 54.0 2.0 26 194-219 81-106 (355)
197 2r62_A Cell division protease 95.0 0.0049 1.7E-07 52.1 0.5 20 200-219 47-66 (268)
198 1gwn_A RHO-related GTP-binding 95.0 0.0098 3.3E-07 48.6 2.4 19 200-218 31-49 (205)
199 2qby_B CDC6 homolog 3, cell di 95.0 0.011 3.8E-07 52.0 2.8 25 196-220 44-68 (384)
200 1mky_A Probable GTP-binding pr 95.0 0.0095 3.3E-07 54.9 2.5 20 199-218 182-201 (439)
201 3n70_A Transport activator; si 95.0 0.011 3.9E-07 45.9 2.5 22 197-218 24-45 (145)
202 1zcb_A G alpha I/13; GTP-bindi 95.0 0.011 3.9E-07 53.8 2.9 22 198-219 34-55 (362)
203 2j1l_A RHO-related GTP-binding 95.0 0.011 3.6E-07 48.4 2.4 19 200-218 37-55 (214)
204 2ew1_A RAS-related protein RAB 94.9 0.011 3.7E-07 48.3 2.4 19 200-218 29-47 (201)
205 2aka_B Dynamin-1; fusion prote 94.9 0.0098 3.3E-07 50.8 2.2 20 199-218 28-47 (299)
206 1j8m_F SRP54, signal recogniti 94.9 0.014 4.7E-07 51.7 3.2 31 190-221 92-122 (297)
207 2qu8_A Putative nucleolar GTP- 94.9 0.0093 3.2E-07 49.2 2.0 20 199-218 31-50 (228)
208 1ofh_A ATP-dependent HSL prote 94.9 0.011 3.9E-07 50.2 2.5 22 198-219 51-72 (310)
209 3d8b_A Fidgetin-like protein 1 94.9 0.0089 3E-07 53.6 1.8 25 195-219 115-139 (357)
210 2ius_A DNA translocase FTSK; n 94.8 0.012 4.1E-07 56.4 2.7 31 193-223 163-193 (512)
211 2qtf_A Protein HFLX, GTP-bindi 94.8 0.012 4E-07 53.6 2.5 20 199-218 181-200 (364)
212 2hup_A RAS-related protein RAB 94.8 0.012 4.2E-07 47.5 2.4 19 200-218 32-50 (201)
213 1sxj_D Activator 1 41 kDa subu 94.8 0.013 4.3E-07 51.0 2.5 22 200-221 61-82 (353)
214 4gzl_A RAS-related C3 botulinu 94.7 0.013 4.5E-07 47.4 2.4 20 199-218 32-51 (204)
215 2e87_A Hypothetical protein PH 94.6 0.013 4.5E-07 52.4 2.3 23 196-218 166-188 (357)
216 1h65_A Chloroplast outer envel 94.6 0.014 4.9E-07 49.8 2.4 20 199-218 41-60 (270)
217 2qmh_A HPR kinase/phosphorylas 94.5 0.034 1.2E-06 47.4 4.6 33 185-218 23-55 (205)
218 3ice_A Transcription terminati 94.5 0.014 4.9E-07 54.7 2.3 32 189-220 166-197 (422)
219 3kl4_A SRP54, signal recogniti 94.5 0.022 7.6E-07 53.3 3.6 25 196-220 96-120 (433)
220 4b4t_K 26S protease regulatory 94.5 0.018 6E-07 54.0 2.9 26 194-219 203-228 (428)
221 4dhe_A Probable GTP-binding pr 94.5 0.0072 2.5E-07 49.1 0.2 20 199-218 31-50 (223)
222 1ypw_A Transitional endoplasmi 94.4 0.0084 2.9E-07 59.9 0.7 30 191-220 505-534 (806)
223 3hws_A ATP-dependent CLP prote 94.3 0.018 6.2E-07 51.3 2.5 25 195-219 49-73 (363)
224 2hf9_A Probable hydrogenase ni 94.3 0.019 6.4E-07 46.9 2.4 20 199-218 40-59 (226)
225 3q3j_B RHO-related GTP-binding 94.3 0.02 6.8E-07 46.9 2.5 19 200-218 30-48 (214)
226 2f6r_A COA synthase, bifunctio 94.3 0.022 7.6E-07 49.5 2.9 21 198-218 76-96 (281)
227 1hqc_A RUVB; extended AAA-ATPa 94.3 0.017 6E-07 49.7 2.3 24 196-219 37-60 (324)
228 2z4s_A Chromosomal replication 94.2 0.019 6.4E-07 53.2 2.5 25 197-221 130-154 (440)
229 2qgz_A Helicase loader, putati 94.2 0.023 7.9E-07 50.2 2.9 27 196-222 151-177 (308)
230 3vkw_A Replicase large subunit 94.1 0.01 3.5E-07 56.0 0.4 25 194-218 158-182 (446)
231 3th5_A RAS-related C3 botulinu 93.1 0.0093 3.2E-07 47.9 0.0 20 199-218 32-51 (204)
232 1g8p_A Magnesium-chelatase 38 94.0 0.019 6.4E-07 49.9 1.9 20 200-219 48-67 (350)
233 2qen_A Walker-type ATPase; unk 94.0 0.025 8.7E-07 48.5 2.8 22 197-218 31-52 (350)
234 1um8_A ATP-dependent CLP prote 94.0 0.023 7.8E-07 50.7 2.5 26 194-219 69-94 (376)
235 4b4t_L 26S protease subunit RP 94.0 0.025 8.6E-07 53.1 2.8 26 194-219 212-237 (437)
236 3l0i_B RAS-related protein RAB 94.0 0.0092 3.2E-07 47.9 -0.1 19 199-217 35-53 (199)
237 3def_A T7I23.11 protein; chlor 93.9 0.024 8.3E-07 48.3 2.4 19 200-218 39-57 (262)
238 4b4t_M 26S protease regulatory 93.9 0.026 9E-07 52.9 2.8 26 194-219 212-237 (434)
239 3pfi_A Holliday junction ATP-d 93.9 0.024 8.4E-07 49.3 2.4 20 199-218 57-76 (338)
240 2g3y_A GTP-binding protein GEM 93.8 0.029 1E-06 46.7 2.6 18 200-217 40-57 (211)
241 3pvs_A Replication-associated 93.7 0.017 5.9E-07 53.9 1.2 27 193-219 44-72 (447)
242 3cmw_A Protein RECA, recombina 93.7 0.026 8.8E-07 61.0 2.6 36 187-222 720-757 (1706)
243 2bjv_A PSP operon transcriptio 93.7 0.03 1E-06 47.2 2.6 22 198-219 30-51 (265)
244 2r44_A Uncharacterized protein 93.7 0.019 6.4E-07 50.1 1.3 22 198-219 47-68 (331)
245 3io5_A Recombination and repai 93.7 0.033 1.1E-06 50.8 2.9 25 192-217 24-48 (333)
246 2ffh_A Protein (FFH); SRP54, s 93.6 0.044 1.5E-06 51.2 3.7 25 196-220 97-121 (425)
247 3vfd_A Spastin; ATPase, microt 93.6 0.025 8.5E-07 51.0 2.0 24 195-218 146-169 (389)
248 4b4t_J 26S protease regulatory 93.6 0.028 9.7E-07 52.3 2.3 26 194-219 179-204 (405)
249 1jr3_A DNA polymerase III subu 93.6 0.036 1.2E-06 48.5 2.9 22 199-220 40-61 (373)
250 3cnl_A YLQF, putative uncharac 93.6 0.03 1E-06 48.5 2.4 20 199-218 101-120 (262)
251 3upu_A ATP-dependent DNA helic 93.5 0.035 1.2E-06 51.3 2.9 21 199-219 47-67 (459)
252 2c9o_A RUVB-like 1; hexameric 93.4 0.038 1.3E-06 51.1 3.0 25 196-220 62-86 (456)
253 3p32_A Probable GTPase RV1496/ 93.4 0.044 1.5E-06 49.1 3.2 23 198-220 80-102 (355)
254 3co5_A Putative two-component 93.4 0.018 6.2E-07 44.7 0.6 23 196-218 26-48 (143)
255 1w5s_A Origin recognition comp 93.4 0.039 1.3E-06 48.8 2.8 24 196-219 49-74 (412)
256 3lv8_A DTMP kinase, thymidylat 93.3 0.042 1.4E-06 47.2 2.8 24 196-219 26-49 (236)
257 1puj_A YLQF, conserved hypothe 93.3 0.036 1.2E-06 48.5 2.4 20 199-218 122-141 (282)
258 1sxj_A Activator 1 95 kDa subu 93.3 0.04 1.4E-06 51.9 2.9 24 196-219 76-99 (516)
259 2fna_A Conserved hypothetical 93.1 0.042 1.4E-06 47.2 2.6 22 198-219 31-52 (357)
260 1bif_A 6-phosphofructo-2-kinas 93.1 0.05 1.7E-06 50.6 3.2 24 197-220 39-62 (469)
261 1iqp_A RFCS; clamp loader, ext 93.0 0.045 1.5E-06 46.7 2.6 21 200-220 49-69 (327)
262 1e9r_A Conjugal transfer prote 92.9 0.053 1.8E-06 49.3 3.1 23 198-220 54-76 (437)
263 3a8t_A Adenylate isopentenyltr 92.9 0.055 1.9E-06 49.3 3.2 23 196-218 39-61 (339)
264 1tue_A Replication protein E1; 92.9 0.035 1.2E-06 47.6 1.7 22 198-219 59-80 (212)
265 4b4t_H 26S protease regulatory 92.9 0.044 1.5E-06 52.0 2.5 26 194-219 240-265 (467)
266 2qpt_A EH domain-containing pr 92.7 0.046 1.6E-06 52.4 2.5 20 199-218 67-86 (550)
267 3cmu_A Protein RECA, recombina 92.7 0.042 1.4E-06 60.3 2.5 37 185-221 718-756 (2050)
268 2x2e_A Dynamin-1; nitration, h 92.6 0.032 1.1E-06 49.8 1.1 20 199-218 33-52 (353)
269 3cmw_A Protein RECA, recombina 92.6 0.049 1.7E-06 58.9 2.6 39 184-222 19-59 (1706)
270 3cmu_A Protein RECA, recombina 92.5 0.049 1.7E-06 59.8 2.6 38 184-221 1066-1105(2050)
271 3hu3_A Transitional endoplasmi 92.5 0.059 2E-06 50.9 2.8 25 194-218 235-259 (489)
272 3e1s_A Exodeoxyribonuclease V, 92.4 0.07 2.4E-06 51.3 3.4 23 197-219 204-226 (574)
273 3geh_A MNME, tRNA modification 92.4 0.053 1.8E-06 50.9 2.4 19 200-218 227-245 (462)
274 3ec1_A YQEH GTPase; atnos1, at 92.4 0.055 1.9E-06 49.0 2.5 24 197-220 162-185 (369)
275 2wkq_A NPH1-1, RAS-related C3 92.4 0.057 1.9E-06 46.3 2.4 25 194-218 152-176 (332)
276 2chq_A Replication factor C sm 92.3 0.06 2E-06 45.8 2.5 21 200-220 41-61 (319)
277 1g41_A Heat shock protein HSLU 92.3 0.059 2E-06 50.7 2.5 25 195-220 49-73 (444)
278 3h2y_A GTPase family protein; 92.2 0.053 1.8E-06 49.2 2.1 24 196-219 159-182 (368)
279 3cf2_A TER ATPase, transitiona 92.2 0.066 2.3E-06 53.9 2.9 25 194-218 235-259 (806)
280 4b4t_I 26S protease regulatory 92.1 0.068 2.3E-06 50.3 2.8 26 194-219 213-238 (437)
281 2vf7_A UVRA2, excinuclease ABC 92.0 0.08 2.7E-06 53.5 3.2 33 186-218 25-58 (842)
282 1sxj_B Activator 1 37 kDa subu 92.0 0.076 2.6E-06 45.2 2.7 21 200-220 45-65 (323)
283 3pxg_A Negative regulator of g 91.9 0.078 2.7E-06 49.4 2.9 22 199-220 203-224 (468)
284 2v3c_C SRP54, signal recogniti 91.8 0.089 3.1E-06 49.0 3.2 25 197-221 99-123 (432)
285 1lnz_A SPO0B-associated GTP-bi 91.7 0.056 1.9E-06 48.7 1.6 18 200-217 161-178 (342)
286 3u61_B DNA polymerase accessor 91.7 0.082 2.8E-06 45.7 2.6 21 198-218 49-69 (324)
287 2iut_A DNA translocase FTSK; n 91.7 0.095 3.3E-06 50.9 3.3 26 198-223 215-240 (574)
288 3o47_A ADP-ribosylation factor 91.7 0.059 2E-06 47.8 1.7 19 199-217 167-185 (329)
289 3nbx_X ATPase RAVA; AAA+ ATPas 91.6 0.058 2E-06 51.3 1.7 23 197-219 41-63 (500)
290 1f5n_A Interferon-induced guan 91.5 0.062 2.1E-06 52.3 1.8 30 186-218 30-59 (592)
291 3dm5_A SRP54, signal recogniti 91.5 0.12 4.3E-06 48.5 3.8 24 196-219 99-122 (443)
292 1cip_A Protein (guanine nucleo 91.5 0.094 3.2E-06 47.5 2.9 21 199-219 34-54 (353)
293 2axn_A 6-phosphofructo-2-kinas 91.5 0.1 3.5E-06 49.6 3.2 25 196-220 34-58 (520)
294 2j69_A Bacterial dynamin-like 91.4 0.097 3.3E-06 51.5 3.0 24 195-218 67-90 (695)
295 4b3f_X DNA-binding protein smu 91.3 0.12 4E-06 49.9 3.5 19 198-216 206-224 (646)
296 3gee_A MNME, tRNA modification 91.2 0.066 2.3E-06 50.4 1.6 19 200-218 236-254 (476)
297 3te6_A Regulatory protein SIR3 91.1 0.071 2.4E-06 47.9 1.6 23 196-218 44-66 (318)
298 3dpu_A RAB family protein; roc 91.0 0.096 3.3E-06 49.3 2.5 19 200-218 44-62 (535)
299 2gk6_A Regulator of nonsense t 90.9 0.14 4.7E-06 49.4 3.5 21 198-218 196-216 (624)
300 2hjg_A GTP-binding protein ENG 90.9 0.1 3.5E-06 47.9 2.5 20 199-218 177-196 (436)
301 3lvq_E ARF-GAP with SH3 domain 90.7 0.11 3.7E-06 48.2 2.5 20 199-218 324-343 (497)
302 2j37_W Signal recognition part 90.7 0.12 4.1E-06 49.3 2.8 24 196-219 100-123 (504)
303 1x6v_B Bifunctional 3'-phospho 90.3 0.15 5E-06 50.1 3.2 23 197-219 52-74 (630)
304 1xzp_A Probable tRNA modificat 90.3 0.05 1.7E-06 51.4 -0.1 20 199-218 245-264 (482)
305 2ygr_A Uvrabc system protein A 90.3 0.14 4.8E-06 52.7 3.1 28 186-213 35-62 (993)
306 4a9a_A Ribosome-interacting GT 90.2 0.082 2.8E-06 48.5 1.3 19 200-218 75-93 (376)
307 2r6f_A Excinuclease ABC subuni 90.2 0.14 4.9E-06 52.5 3.1 28 186-213 33-60 (972)
308 1ko7_A HPR kinase/phosphatase; 89.8 0.23 7.9E-06 44.6 3.8 33 184-217 132-164 (314)
309 1u0j_A DNA replication protein 89.8 0.15 5.1E-06 44.9 2.5 21 199-219 106-126 (267)
310 1r6b_X CLPA protein; AAA+, N-t 89.6 0.17 5.8E-06 49.5 2.9 26 196-221 206-231 (758)
311 1m8p_A Sulfate adenylyltransfe 89.5 0.18 6E-06 48.7 3.0 26 196-221 395-420 (573)
312 1w36_D RECD, exodeoxyribonucle 89.5 0.2 7E-06 48.2 3.4 24 196-219 163-186 (608)
313 1qvr_A CLPB protein; coiled co 89.4 0.13 4.3E-06 51.4 1.9 23 199-221 193-215 (854)
314 2xau_A PRE-mRNA-splicing facto 89.0 0.13 4.5E-06 51.2 1.7 26 194-219 106-131 (773)
315 2xzl_A ATP-dependent helicase 89.0 0.23 7.8E-06 49.7 3.4 22 197-218 375-396 (802)
316 3pxi_A Negative regulator of g 88.9 0.2 6.7E-06 49.2 2.9 22 199-220 203-224 (758)
317 3q5d_A Atlastin-1; G protein, 88.9 0.18 6.2E-06 47.4 2.5 25 196-220 66-90 (447)
318 1z6t_A APAF-1, apoptotic prote 88.9 0.23 7.9E-06 46.5 3.2 23 196-218 146-168 (591)
319 2gks_A Bifunctional SAT/APS ki 88.9 0.21 7.3E-06 47.7 3.1 25 195-219 370-394 (546)
320 2wjy_A Regulator of nonsense t 88.5 0.27 9.1E-06 49.3 3.6 22 197-218 371-392 (800)
321 1r6b_X CLPA protein; AAA+, N-t 88.4 0.24 8.2E-06 48.4 3.1 25 196-220 487-511 (758)
322 3f9v_A Minichromosome maintena 88.4 0.11 3.8E-06 50.1 0.7 24 195-218 325-348 (595)
323 1azs_C GS-alpha; complex (lyas 88.1 0.24 8.1E-06 45.9 2.7 22 199-220 42-63 (402)
324 1qvr_A CLPB protein; coiled co 87.3 0.29 9.9E-06 48.8 2.9 24 198-221 589-612 (854)
325 1sky_E F1-ATPase, F1-ATP synth 87.2 0.36 1.2E-05 45.8 3.4 35 185-220 140-174 (473)
326 3pxi_A Negative regulator of g 86.8 0.35 1.2E-05 47.4 3.2 23 199-221 523-545 (758)
327 2j9r_A Thymidine kinase; TK1, 86.7 0.33 1.1E-05 41.4 2.6 26 194-219 25-50 (214)
328 3e2i_A Thymidine kinase; Zn-bi 86.4 0.4 1.4E-05 41.1 3.0 29 190-218 21-50 (219)
329 4akg_A Glutathione S-transfera 85.9 0.31 1.1E-05 54.9 2.5 20 200-219 926-945 (2695)
330 1g8f_A Sulfate adenylyltransfe 85.2 0.44 1.5E-05 45.5 2.9 27 195-221 393-419 (511)
331 4dcu_A GTP-binding protein ENG 84.8 0.42 1.4E-05 44.0 2.5 22 197-218 195-216 (456)
332 3izq_1 HBS1P, elongation facto 84.7 0.42 1.5E-05 46.3 2.6 24 195-218 165-188 (611)
333 1knx_A Probable HPR(Ser) kinas 84.2 0.76 2.6E-05 41.2 3.8 31 185-216 136-166 (312)
334 3cf2_A TER ATPase, transitiona 83.8 0.37 1.2E-05 48.5 1.7 26 194-219 508-533 (806)
335 3p26_A Elongation factor 1 alp 83.5 0.39 1.3E-05 44.7 1.7 20 199-218 35-54 (483)
336 2xxa_A Signal recognition part 81.7 0.98 3.3E-05 41.9 3.6 25 195-219 98-122 (433)
337 3vkg_A Dynein heavy chain, cyt 81.0 0.64 2.2E-05 53.2 2.5 19 201-219 910-928 (3245)
338 3qq5_A Small GTP-binding prote 79.7 0.34 1.2E-05 44.9 -0.2 20 199-218 36-55 (423)
339 3zvr_A Dynamin-1; hydrolase, D 78.7 0.99 3.4E-05 45.2 2.7 20 199-218 53-72 (772)
340 3mca_A HBS1, elongation factor 78.4 1 3.4E-05 43.4 2.6 20 199-218 179-198 (592)
341 3l0o_A Transcription terminati 75.3 1.5 5.2E-05 41.0 2.8 36 184-220 163-198 (427)
342 2a5y_B CED-4; apoptosis; HET: 72.9 2.1 7E-05 40.2 3.1 22 197-218 152-173 (549)
343 1r5b_A Eukaryotic peptide chai 72.8 1.2 4E-05 41.5 1.4 23 196-218 42-64 (467)
344 4akg_A Glutathione S-transfera 72.4 1.2 4.1E-05 50.3 1.6 25 193-217 1263-1287(2695)
345 3rc3_A ATP-dependent RNA helic 68.5 3.1 0.00011 40.8 3.4 17 196-212 154-170 (677)
346 4ido_A Atlastin-1; GTPase, GTP 68.4 2.7 9.1E-05 39.7 2.8 26 196-221 66-91 (457)
347 3c5h_A Glucocorticoid receptor 68.3 2 6.7E-05 36.1 1.7 16 203-218 34-49 (255)
348 1ii2_A Phosphoenolpyruvate car 67.4 2.1 7.2E-05 41.1 1.9 20 195-214 211-230 (524)
349 2olr_A Phosphoenolpyruvate car 67.3 2.1 7.2E-05 41.2 1.9 20 195-214 239-258 (540)
350 1vt4_I APAF-1 related killer D 67.3 2.6 9E-05 44.2 2.7 23 196-218 149-171 (1221)
351 1of1_A Thymidine kinase; trans 65.4 2.7 9.3E-05 38.6 2.2 23 196-218 48-70 (376)
352 1vec_A ATP-dependent RNA helic 64.9 4.4 0.00015 31.9 3.1 15 198-212 41-55 (206)
353 1j3b_A ATP-dependent phosphoen 63.9 2.6 9E-05 40.4 1.8 20 195-214 223-242 (529)
354 1ytm_A Phosphoenolpyruvate car 63.6 3.5 0.00012 39.7 2.6 20 195-214 232-252 (532)
355 3b6e_A Interferon-induced heli 60.8 2.6 9E-05 33.2 1.0 19 198-216 49-67 (216)
356 3end_A Light-independent proto 60.4 6.8 0.00023 33.3 3.7 26 195-220 39-64 (307)
357 2fz4_A DNA repair protein RAD2 60.4 4.6 0.00016 33.6 2.5 16 200-215 111-126 (237)
358 2gxq_A Heat resistant RNA depe 59.9 4.1 0.00014 32.1 2.0 17 197-213 38-54 (207)
359 3sfz_A APAF-1, apoptotic pepti 58.0 4.5 0.00016 40.4 2.4 23 196-218 146-168 (1249)
360 3avx_A Elongation factor TS, e 57.5 5 0.00017 42.4 2.7 21 199-219 298-318 (1289)
361 2ck3_D ATP synthase subunit be 54.4 6.5 0.00022 37.3 2.7 35 184-219 141-175 (482)
362 2pl3_A Probable ATP-dependent 54.0 9.4 0.00032 30.8 3.3 17 197-213 62-78 (236)
363 2va8_A SSO2462, SKI2-type heli 52.2 7.5 0.00026 37.3 2.8 18 197-214 46-63 (715)
364 2wv9_A Flavivirin protease NS2 50.0 9.3 0.00032 37.3 3.1 21 194-214 238-258 (673)
365 3eiq_A Eukaryotic initiation f 48.7 9.8 0.00034 33.0 2.8 16 198-213 78-93 (414)
366 1qde_A EIF4A, translation init 48.4 9.9 0.00034 30.3 2.6 16 198-213 52-67 (224)
367 2z0m_A 337AA long hypothetical 47.4 10 0.00035 31.7 2.6 17 197-213 31-47 (337)
368 3f8t_A Predicted ATPase involv 47.2 4.3 0.00015 38.8 0.2 18 199-217 241-258 (506)
369 1hv8_A Putative ATP-dependent 46.5 11 0.00037 31.8 2.7 16 198-213 45-60 (367)
370 3vkg_A Dynein heavy chain, cyt 46.3 6.5 0.00022 45.3 1.5 23 194-216 1301-1323(3245)
371 3vr4_A V-type sodium ATPase ca 46.0 11 0.00038 36.7 2.9 33 185-218 221-253 (600)
372 3oiy_A Reverse gyrase helicase 45.8 9.8 0.00034 33.5 2.4 16 197-212 36-51 (414)
373 3iuy_A Probable ATP-dependent 45.3 15 0.0005 29.5 3.2 16 198-213 58-73 (228)
374 2c61_A A-type ATP synthase non 44.9 7 0.00024 36.9 1.3 35 184-219 140-174 (469)
375 2whx_A Serine protease/ntpase/ 44.8 12 0.00042 35.9 3.0 20 194-213 183-202 (618)
376 3gqb_A V-type ATP synthase alp 44.4 11 0.00039 36.5 2.7 34 184-218 209-242 (578)
377 2r9v_A ATP synthase subunit al 44.2 10 0.00036 36.2 2.4 34 184-218 163-197 (515)
378 3o8b_A HCV NS3 protease/helica 44.2 10 0.00035 37.2 2.4 19 195-213 230-248 (666)
379 3ber_A Probable ATP-dependent 43.1 17 0.00059 30.0 3.3 16 198-213 81-96 (249)
380 1t6n_A Probable ATP-dependent 42.5 14 0.00049 29.3 2.6 15 198-212 52-66 (220)
381 2zj8_A DNA helicase, putative 42.3 11 0.00039 36.2 2.4 18 197-214 39-56 (720)
382 3ly5_A ATP-dependent RNA helic 42.1 12 0.00043 31.1 2.3 16 198-213 92-107 (262)
383 3cio_A ETK, tyrosine-protein k 42.0 18 0.0006 31.3 3.3 25 196-220 103-128 (299)
384 3fe2_A Probable ATP-dependent 41.9 17 0.00057 29.6 3.0 17 197-213 66-82 (242)
385 1xti_A Probable ATP-dependent 41.8 16 0.00053 31.4 3.0 15 198-212 46-60 (391)
386 3mfy_A V-type ATP synthase alp 41.6 9.8 0.00034 37.0 1.8 34 184-218 215-248 (588)
387 1fx0_B ATP synthase beta chain 41.2 12 0.00041 35.7 2.2 35 184-219 153-187 (498)
388 2qe7_A ATP synthase subunit al 41.2 10 0.00035 36.1 1.8 33 185-218 151-184 (502)
389 1rif_A DAR protein, DNA helica 41.0 17 0.00059 30.4 3.0 14 201-214 132-145 (282)
390 2gol_A Matrix protein P17 (MA) 40.1 12 0.0004 29.7 1.7 14 214-227 76-91 (133)
391 2ck3_A ATP synthase subunit al 39.9 11 0.00037 36.0 1.8 35 185-220 151-186 (510)
392 3bfv_A CAPA1, CAPB2, membrane 39.8 21 0.00071 30.3 3.4 26 196-221 81-107 (271)
393 3dkp_A Probable ATP-dependent 39.8 20 0.00068 29.0 3.2 17 197-213 66-82 (245)
394 1fx0_A ATP synthase alpha chai 38.9 9.7 0.00033 36.3 1.2 34 184-218 151-185 (507)
395 2i4i_A ATP-dependent RNA helic 38.1 18 0.0006 31.4 2.7 17 196-212 51-67 (417)
396 3pey_A ATP-dependent RNA helic 37.9 18 0.00063 30.7 2.8 17 196-212 43-59 (395)
397 1kjw_A Postsynaptic density pr 37.8 15 0.00051 32.0 2.2 21 195-218 103-123 (295)
398 4a4z_A Antiviral helicase SKI2 36.9 20 0.00068 36.5 3.2 18 196-213 53-70 (997)
399 1s2m_A Putative ATP-dependent 36.6 19 0.00064 31.1 2.6 15 198-212 59-73 (400)
400 3bor_A Human initiation factor 36.5 10 0.00036 30.8 0.9 16 198-213 68-83 (237)
401 1ny5_A Transcriptional regulat 35.9 17 0.00059 32.5 2.3 20 200-219 163-182 (387)
402 1wrb_A DJVLGB; RNA helicase, D 35.9 24 0.00083 28.7 3.1 17 197-213 60-76 (253)
403 3fht_A ATP-dependent RNA helic 35.8 21 0.0007 30.8 2.8 18 196-213 63-80 (412)
404 3oaa_A ATP synthase subunit al 35.7 14 0.00047 35.4 1.7 32 186-218 152-184 (513)
405 3fmp_B ATP-dependent RNA helic 35.5 23 0.00078 31.9 3.1 18 196-213 130-147 (479)
406 1ed1_A GAG polyprotein, SIV MA 34.8 20 0.00067 28.4 2.2 17 211-227 72-90 (135)
407 2p6r_A Afuhel308 helicase; pro 34.3 9.5 0.00032 36.6 0.4 18 197-214 40-57 (702)
408 3ug7_A Arsenical pump-driving 33.2 33 0.0011 30.2 3.7 26 196-221 25-50 (349)
409 1q0u_A Bstdead; DEAD protein, 32.8 14 0.00049 29.4 1.2 15 198-212 42-56 (219)
410 3fkq_A NTRC-like two-domain pr 32.8 31 0.0011 30.4 3.5 26 195-220 141-167 (373)
411 3fmo_B ATP-dependent RNA helic 32.3 25 0.00086 30.1 2.7 18 196-213 130-147 (300)
412 3vr4_D V-type sodium ATPase su 31.9 15 0.00051 34.7 1.3 34 184-218 139-172 (465)
413 3i5x_A ATP-dependent RNA helic 31.2 42 0.0014 30.7 4.2 17 196-212 110-126 (563)
414 2oxc_A Probable ATP-dependent 31.2 27 0.00092 28.1 2.6 17 197-213 61-77 (230)
415 1ihu_A Arsenical pump-driving 30.8 36 0.0012 32.0 3.7 25 196-220 326-350 (589)
416 2oca_A DAR protein, ATP-depend 30.7 32 0.0011 31.1 3.3 16 199-214 130-145 (510)
417 3gqb_B V-type ATP synthase bet 30.1 14 0.00048 34.8 0.8 34 184-218 135-168 (464)
418 2oze_A ORF delta'; para, walke 28.2 32 0.0011 28.8 2.6 23 197-219 34-59 (298)
419 3dzd_A Transcriptional regulat 27.7 29 0.001 30.8 2.4 19 200-218 155-173 (368)
420 4ds7_E Spindle POLE BODY compo 27.5 33 0.0011 23.0 2.0 14 214-227 12-25 (55)
421 2j0s_A ATP-dependent RNA helic 27.0 33 0.0011 29.7 2.6 16 198-213 75-90 (410)
422 2v1x_A ATP-dependent DNA helic 26.7 35 0.0012 32.4 2.9 18 197-214 59-76 (591)
423 3la6_A Tyrosine-protein kinase 26.1 42 0.0014 28.8 3.0 24 197-220 92-116 (286)
424 3vqt_A RF-3, peptide chain rel 25.4 37 0.0013 32.1 2.8 20 200-219 34-53 (548)
425 1gku_B Reverse gyrase, TOP-RG; 24.8 34 0.0012 35.0 2.5 16 197-212 71-86 (1054)
426 3l9o_A ATP-dependent RNA helic 24.4 28 0.00096 35.9 1.8 19 195-213 197-215 (1108)
427 1fuu_A Yeast initiation factor 24.1 23 0.00077 30.3 0.9 15 199-213 60-74 (394)
428 3k9g_A PF-32 protein; ssgcid, 23.9 58 0.002 26.6 3.4 24 197-220 27-51 (267)
429 3fho_A ATP-dependent RNA helic 23.8 43 0.0015 30.7 2.8 18 196-213 157-174 (508)
430 3sqw_A ATP-dependent RNA helic 23.8 67 0.0023 29.8 4.2 18 196-213 59-76 (579)
431 4ddu_A Reverse gyrase; topoiso 22.5 45 0.0015 34.4 2.9 16 198-213 94-109 (1104)
432 2xgj_A ATP-dependent RNA helic 22.1 58 0.002 33.2 3.6 18 197-214 101-118 (1010)
433 3ez2_A Plasmid partition prote 21.1 66 0.0022 28.4 3.4 25 196-220 107-132 (398)
434 2fwr_A DNA repair protein RAD2 20.7 54 0.0019 29.2 2.8 14 200-213 111-124 (472)
435 2ykg_A Probable ATP-dependent 20.5 59 0.002 30.5 3.1 17 197-213 28-44 (696)
436 1g5t_A COB(I)alamin adenosyltr 20.1 63 0.0022 26.7 2.9 25 198-222 29-53 (196)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.68 E-value=1.8e-08 Score=86.74 Aligned_cols=36 Identities=14% Similarity=-0.020 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|||-.|+||+++.|+||.|||||||||+|.-
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 569999999999999999999999999999999863
No 2
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.59 E-value=4.2e-08 Score=86.18 Aligned_cols=36 Identities=14% Similarity=-0.004 Sum_probs=33.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|||-.|+||+++.|+||.|||||||||+|+-
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 458999999999999999999999999999999863
No 3
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.57 E-value=4.4e-08 Score=85.90 Aligned_cols=37 Identities=19% Similarity=-0.035 Sum_probs=34.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.||+|||-.|++|+++.|+||.|||||||||+|+-+
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3589999999999999999999999999999998753
No 4
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.55 E-value=2.7e-08 Score=84.91 Aligned_cols=36 Identities=19% Similarity=0.043 Sum_probs=33.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|||-.|+||+++.|+||+|||||||||+|+-
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999999999999999999863
No 5
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.52 E-value=3.9e-08 Score=84.83 Aligned_cols=35 Identities=20% Similarity=0.060 Sum_probs=33.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..||+|||-.|+||+++.|+||.|||||||||+|+
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHT
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45899999999999999999999999999999986
No 6
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.51 E-value=3.8e-08 Score=84.80 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=33.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..||+|||-.|+||+++.|+||+|||||||||+|+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 45899999999999999999999999999999985
No 7
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.51 E-value=5e-08 Score=84.58 Aligned_cols=37 Identities=16% Similarity=-0.039 Sum_probs=34.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..||+|||-.|++|+++.|+||.|||||||||+|+-+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3589999999999999999999999999999998743
No 8
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.51 E-value=4.2e-08 Score=85.13 Aligned_cols=36 Identities=14% Similarity=-0.040 Sum_probs=33.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|||-.|+||+++.|+||+|||||||||+|+-
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999999999999999999863
No 9
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.50 E-value=4.6e-08 Score=83.75 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=33.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..||+|||-.|++|+++.|+||.|||||||||+|+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45899999999999999999999999999999986
No 10
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.50 E-value=4.6e-08 Score=84.35 Aligned_cols=36 Identities=6% Similarity=-0.073 Sum_probs=33.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|||-.|++|+++.|+||.|||||||||+|+-
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999999999999999999863
No 11
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.50 E-value=3.9e-08 Score=85.57 Aligned_cols=35 Identities=20% Similarity=0.048 Sum_probs=33.1
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.||+|||-.|++|+++.|+||.|||||||||+|+-
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999999999999999999863
No 12
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.49 E-value=4.6e-08 Score=85.57 Aligned_cols=36 Identities=14% Similarity=-0.007 Sum_probs=33.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|||-.|++|+++.|+||.|||||||||+|+-
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999999999999999999863
No 13
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.48 E-value=1.5e-07 Score=86.90 Aligned_cols=38 Identities=21% Similarity=0.106 Sum_probs=34.8
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
...+|+|||-.|++|+++.|+||+|||||||||+|.-+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 35699999999999999999999999999999998743
No 14
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.47 E-value=5.1e-08 Score=83.24 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=32.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.||+|||-.|++|+++.|+||.|||||||||+|+
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHT
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5899999999999999999999999999999985
No 15
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.47 E-value=5.5e-08 Score=85.48 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=33.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|||-.|++|+++.|+||.|||||||||+|+-
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 358999999999999999999999999999999863
No 16
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.47 E-value=5.7e-08 Score=84.97 Aligned_cols=36 Identities=11% Similarity=-0.028 Sum_probs=33.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|||-.|++|+++.|+||.|||||||||+|+-
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999999999999999999863
No 17
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.46 E-value=5.9e-08 Score=85.37 Aligned_cols=36 Identities=19% Similarity=0.084 Sum_probs=33.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|||-.|+||+++.|+||+|||||||||+|+-
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 458999999999999999999999999999999863
No 18
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.46 E-value=6.2e-08 Score=85.72 Aligned_cols=35 Identities=17% Similarity=0.022 Sum_probs=33.0
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|||-.|++|+++.|+||.|||||||||+|+-
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 48999999999999999999999999999999863
No 19
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.46 E-value=6e-08 Score=84.74 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=33.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..||+|||-.|+||+++.|+||+|||||||||+|+-
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 459999999999999999999999999999999863
No 20
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.46 E-value=6.8e-08 Score=85.49 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=33.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..||+|||-.|++|+++.|+||.|||||||||+|+
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 35899999999999999999999999999999986
No 21
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.45 E-value=7.1e-08 Score=84.06 Aligned_cols=35 Identities=9% Similarity=-0.000 Sum_probs=33.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..||+|+|-.|++|+++.|+||.|||||||||+|+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHT
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 35899999999999999999999999999999986
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.45 E-value=6.6e-08 Score=84.67 Aligned_cols=36 Identities=19% Similarity=0.085 Sum_probs=33.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|||-.|++|+++.|+||.|||||||||+|+-
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 458999999999999999999999999999999863
No 23
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.45 E-value=7.6e-08 Score=83.85 Aligned_cols=34 Identities=12% Similarity=0.032 Sum_probs=32.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+|+|+|-.|++|+++.|+||.|||||||||+|+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 5899999999999999999999999999999986
No 24
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.38 E-value=1.6e-07 Score=86.30 Aligned_cols=36 Identities=8% Similarity=-0.090 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|+|-.|++|+++.|+||+|||||||||+|+=
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 458999999999999999999999999999999873
No 25
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.38 E-value=1.4e-07 Score=86.77 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|||-.|++||++.|+||+|||||||||+|+-
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhc
Confidence 458999999999999999999999999999999874
No 26
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.36 E-value=1.1e-07 Score=83.05 Aligned_cols=40 Identities=10% Similarity=-0.134 Sum_probs=36.2
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
...+|++++|-++||++++|+||||||||||++.|+..+.
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999987653
No 27
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.35 E-value=1.9e-07 Score=85.79 Aligned_cols=36 Identities=14% Similarity=-0.063 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|+|-.|++|+++.|+||+|||||||||+|+-
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHC
Confidence 458999999999999999999999999999999873
No 28
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.35 E-value=1.6e-07 Score=83.66 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=33.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..||+|+|-.|++|+++.|+||.|||||||||+|+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHT
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 35899999999999999999999999999999985
No 29
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.34 E-value=2.1e-07 Score=85.78 Aligned_cols=36 Identities=8% Similarity=-0.025 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|||-.|++|+++.|+||+|||||||||+|+-
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHc
Confidence 458999999999999999999999999999999873
No 30
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.34 E-value=2.1e-07 Score=86.33 Aligned_cols=36 Identities=3% Similarity=-0.073 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|||-.|++||++.|+||+|||||||||+|+=
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHc
Confidence 458999999999999999999999999999999873
No 31
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.33 E-value=2.2e-07 Score=85.41 Aligned_cols=36 Identities=11% Similarity=-0.054 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|+|-.|++|+++.|+||+|||||||||+|+-
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence 458999999999999999999999999999999873
No 32
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.33 E-value=2.3e-07 Score=85.60 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|+|-.|++|+++.|+||+|||||||||+|+-
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 458999999999999999999999999999999874
No 33
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.30 E-value=1.5e-07 Score=84.58 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=32.5
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+|+|||-.|+||+++.|+||+|||||||||+|+
T Consensus 68 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHT
T ss_pred ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHH
Confidence 4899999999999999999999999999999985
No 34
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.29 E-value=1.5e-07 Score=76.68 Aligned_cols=37 Identities=0% Similarity=-0.361 Sum_probs=34.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+++++|-.|+||+++.|+||.|||||||+|+|+=+
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4589999999999999999999999999999998754
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.29 E-value=3.1e-07 Score=85.23 Aligned_cols=36 Identities=17% Similarity=0.009 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|||-.|++|+++.|+||+|||||||||+|+=
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 458999999999999999999999999999999873
No 36
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.28 E-value=2.7e-07 Score=80.99 Aligned_cols=35 Identities=6% Similarity=-0.141 Sum_probs=32.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|+|-.|+ |+.+.|+||.|||||||||+|+=
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTT
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhC
Confidence 458999999999 99999999999999999999863
No 37
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.27 E-value=1.9e-07 Score=85.38 Aligned_cols=34 Identities=9% Similarity=-0.113 Sum_probs=32.7
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+|+|+|-.|++|+++.|+||+|||||||||+|+=
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 8999999999999999999999999999999873
No 38
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.26 E-value=2.6e-07 Score=84.47 Aligned_cols=34 Identities=12% Similarity=-0.082 Sum_probs=32.7
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+|+|+|-.|++|+++.|+||+|||||||||+|+-
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHc
Confidence 8999999999999999999999999999999873
No 39
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.22 E-value=6e-07 Score=74.95 Aligned_cols=34 Identities=12% Similarity=0.018 Sum_probs=28.9
Q ss_pred cccc-eeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 187 LNRV-SGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 187 L~dV-SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
|+++ .|-|++|++++|+||||||||||+|.|+..
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4444 357999999999999999999999999843
No 40
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.21 E-value=2e-07 Score=83.88 Aligned_cols=37 Identities=11% Similarity=-0.173 Sum_probs=34.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|||-.|+||+++.|+||+|||||||+|+|.=+
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4699999999999999999999999999999998754
No 41
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.12 E-value=9.6e-07 Score=74.24 Aligned_cols=35 Identities=11% Similarity=-0.056 Sum_probs=22.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
-++.+++|-.+++|+++.|+||+||||||++|.|.
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHH
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999999999999999999987
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.09 E-value=1.3e-06 Score=84.15 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=32.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|+|-.|+||+++.|+||+|||||||+|.|.
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~ 391 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL 391 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHT
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35899999999999999999999999999999985
No 43
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.08 E-value=1.3e-06 Score=84.08 Aligned_cols=35 Identities=6% Similarity=-0.050 Sum_probs=33.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|+|-.|+||+.+.|+||+|||||||+|.|.
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 390 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHT
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35899999999999999999999999999999985
No 44
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.08 E-value=1.6e-06 Score=83.40 Aligned_cols=36 Identities=11% Similarity=-0.106 Sum_probs=33.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|+|-.|+||+.+.|+||+|||||||+|.|.=
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999999999999999999863
No 45
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.06 E-value=1.2e-06 Score=83.17 Aligned_cols=38 Identities=13% Similarity=-0.060 Sum_probs=34.0
Q ss_pred ccccccccee-EEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 183 KINILNRVSG-ILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 183 ~~~IL~dVSG-iiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
...+|+||++ -|.+|++++|+|+||||||||+|.+.+.
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~ 62 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3668999997 9999999999999999999999997543
No 46
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.03 E-value=2e-06 Score=83.21 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=32.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|+|-.|+||+.+.|+||+|||||||+|.|.
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHT
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 35899999999999999999999999999999885
No 47
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.01 E-value=1.2e-05 Score=82.53 Aligned_cols=35 Identities=11% Similarity=-0.116 Sum_probs=33.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.||+|+|-.|++|+.+.|+||.|||||||||+|+
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35899999999999999999999999999999997
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.00 E-value=2e-06 Score=82.49 Aligned_cols=34 Identities=18% Similarity=0.033 Sum_probs=32.0
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+||| .|+|||.+.|+||.|||||||||+|+=
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4899999 999999999999999999999999874
No 49
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.99 E-value=1.7e-06 Score=83.22 Aligned_cols=35 Identities=9% Similarity=-0.006 Sum_probs=32.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|+|-.|+||+++.|+||+|||||||+|.|.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 45899999999999999999999999999999764
No 50
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.97 E-value=2.1e-06 Score=82.92 Aligned_cols=35 Identities=20% Similarity=0.066 Sum_probs=32.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|+|-.|+||+.+.|+||+|||||||+|.|.
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTT
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45899999999999999999999999999999874
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.91 E-value=3e-06 Score=82.64 Aligned_cols=34 Identities=21% Similarity=0.047 Sum_probs=31.9
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|+| .|+||+.+.|+||.|||||||||+|+=
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhC
Confidence 4899999 999999999999999999999999863
No 52
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.90 E-value=2.6e-06 Score=76.90 Aligned_cols=37 Identities=8% Similarity=-0.124 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|++++-.+++|+++.|+|+|||||||||+.|.-+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4589999999999999999999999999999998744
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.88 E-value=5e-06 Score=81.13 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=32.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|||-.|++|+++.|+||+|||||||||+|.
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 45799999999999999999999999999999874
No 54
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.88 E-value=2.8e-06 Score=79.91 Aligned_cols=34 Identities=21% Similarity=0.038 Sum_probs=31.3
Q ss_pred cccceeEEeCCeE--EEEecCCCCCchhHHHHHHHH
Q 037424 187 LNRVSGILKPGSV--NLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 187 L~dVSGiiKPGeM--TLVLGrPGSGcSTlLK~L~~~ 220 (231)
|+|||-.|++|+. +.|+||+|||||||||+|+-+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 9999999999999 999999999999999999754
No 55
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.84 E-value=2.1e-06 Score=78.18 Aligned_cols=33 Identities=9% Similarity=-0.003 Sum_probs=31.0
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
++++++-.|+||++++|.||+|||||||||+|.
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHH
Confidence 459999999999999999999999999999985
No 56
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.82 E-value=1.4e-06 Score=78.68 Aligned_cols=33 Identities=6% Similarity=-0.066 Sum_probs=31.7
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+|++++-.++||++++|+||+|||||||||+|.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGG
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHh
Confidence 899999999999999999999999999999975
No 57
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.78 E-value=2.9e-06 Score=79.31 Aligned_cols=36 Identities=17% Similarity=0.025 Sum_probs=33.8
Q ss_pred cccccccceeEEeCCe--------------------EEEEecCCCCCchhHHHHHH
Q 037424 183 KINILNRVSGILKPGS--------------------VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGe--------------------MTLVLGrPGSGcSTlLK~L~ 218 (231)
...+|+|++-.|++|+ .+.|+||||||||||||+|+
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHh
Confidence 4569999999999999 99999999999999999986
No 58
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.76 E-value=1.2e-05 Score=78.25 Aligned_cols=34 Identities=15% Similarity=-0.012 Sum_probs=31.0
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.|+++++.|++||++.|+||.|||||||||+|+=
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4778888899999999999999999999999873
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.76 E-value=6.6e-06 Score=84.39 Aligned_cols=36 Identities=8% Similarity=-0.236 Sum_probs=33.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.||+|+|-.|++|+.+.|+||.|||||||||+|+-
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaG 721 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTT
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999999999999999999963
No 60
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.75 E-value=1.1e-05 Score=84.58 Aligned_cols=35 Identities=23% Similarity=0.101 Sum_probs=33.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..||+|||-.|+||+.+.|.||+|||||||++.|+
T Consensus 1092 ~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHT
T ss_pred CccccceeEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 45899999999999999999999999999999885
No 61
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.75 E-value=7.3e-06 Score=75.01 Aligned_cols=33 Identities=6% Similarity=-0.143 Sum_probs=29.6
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+|++++ ++||++++|.||+||||||+|++|.=+
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 678877 899999999999999999999998654
No 62
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.72 E-value=6.2e-06 Score=76.10 Aligned_cols=36 Identities=8% Similarity=-0.141 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|++++-.+++|+.++|.||||||||||+|+|+-
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 568999999999999999999999999999999874
No 63
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.71 E-value=1.6e-05 Score=76.14 Aligned_cols=33 Identities=18% Similarity=0.034 Sum_probs=30.2
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.|++++..|++||++.|+||.|||||||||+|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~ 333 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLA 333 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHh
Confidence 467777788999999999999999999999987
No 64
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.70 E-value=1.6e-05 Score=77.60 Aligned_cols=32 Identities=9% Similarity=0.037 Sum_probs=30.2
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVF 214 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlL 214 (231)
..++|+|||-.|++|+++.|+||.||||||||
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 35689999999999999999999999999997
No 65
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.69 E-value=1.5e-05 Score=76.50 Aligned_cols=33 Identities=15% Similarity=-0.036 Sum_probs=29.9
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.|+++++.|++||++.|+||.|||||||||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~ 315 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILV 315 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHh
Confidence 466677889999999999999999999999986
No 66
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.67 E-value=1.4e-05 Score=83.64 Aligned_cols=35 Identities=14% Similarity=0.031 Sum_probs=32.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|||-.|+||+.+.|+||+|||||||+|.|.
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~ 437 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ 437 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTT
T ss_pred CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45899999999999999999999999999999874
No 67
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.67 E-value=2.1e-05 Score=74.91 Aligned_cols=36 Identities=6% Similarity=-0.280 Sum_probs=33.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+|+|-.|++ +++.|+||+|||||||||+|+-+
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 4579999999999 99999999999999999999865
No 68
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.67 E-value=1.8e-05 Score=83.07 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=32.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|+|-.|+||+++.|.||+|||||||++.|.
T Consensus 431 ~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~ 465 (1321)
T 4f4c_A 431 VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL 465 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHT
T ss_pred CceeeceEEeecCCcEEEEEecCCCcHHHHHHHhc
Confidence 46899999999999999999999999999999873
No 69
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.67 E-value=1.9e-05 Score=64.88 Aligned_cols=26 Identities=4% Similarity=-0.219 Sum_probs=22.5
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.++|+++.|+|+|||||||++|.|+=
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999999963
No 70
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.66 E-value=1.9e-05 Score=68.34 Aligned_cols=28 Identities=11% Similarity=-0.191 Sum_probs=25.7
Q ss_pred EEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 193 ILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 193 iiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
-+.+|++++|.||||||||||++.|+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999999998864
No 71
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.66 E-value=1.3e-05 Score=72.56 Aligned_cols=35 Identities=9% Similarity=0.024 Sum_probs=30.2
Q ss_pred ccccc-eeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 186 ILNRV-SGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 186 IL~dV-SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
-|+++ .|-|.+|++++|.||||||||||++.|+..
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35555 588999999999999999999999998765
No 72
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.66 E-value=9.1e-06 Score=71.08 Aligned_cols=34 Identities=6% Similarity=-0.139 Sum_probs=30.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..++++++-.+.+| +||.||||+|||||+|+|+-
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHH
Confidence 45889999888888 89999999999999999874
No 73
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.63 E-value=1.2e-05 Score=75.19 Aligned_cols=34 Identities=15% Similarity=0.049 Sum_probs=30.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+++ ..+||++++|.||+||||||||++|.=
T Consensus 156 ~~~L~~l--~~~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 156 HDNFRRL--IKRPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp HHHHHHH--HTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHHH--HHhcCCeEEEECCCCCCHHHHHHHHHh
Confidence 5588888 458999999999999999999999864
No 74
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.61 E-value=2.5e-05 Score=79.75 Aligned_cols=40 Identities=13% Similarity=-0.103 Sum_probs=36.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLW 223 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~ 223 (231)
..|++|++-.+.+|++++|+||.|||||||||+++++++.
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~ 688 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM 688 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4588999999999999999999999999999999877654
No 75
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.60 E-value=8.9e-06 Score=73.80 Aligned_cols=37 Identities=16% Similarity=0.007 Sum_probs=34.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
+.+|+|++-.+.|| ++.|+|+.||||||||++|.++.
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999 99999999999999999998764
No 76
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.60 E-value=2.9e-05 Score=81.30 Aligned_cols=35 Identities=23% Similarity=0.044 Sum_probs=33.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+|+|||-.|+|||.+.|+||.|||||||+|+|+
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~ 1080 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE 1080 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHT
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35999999999999999999999999999999986
No 77
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.59 E-value=1.7e-05 Score=80.80 Aligned_cols=40 Identities=8% Similarity=-0.047 Sum_probs=36.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVLW 223 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~ 223 (231)
..|++||+-.+.+|++++|+||.|||||||||++.++++.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~ 699 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM 699 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999887654
No 78
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.58 E-value=7.6e-06 Score=71.31 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=33.6
Q ss_pred ccccccceeEEeC---CeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKP---GSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKP---GeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+|+|-.|++ |+.+.|.|+|||||||+.|.|+=
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999 99999999999999999999974
No 79
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.56 E-value=4.8e-05 Score=60.95 Aligned_cols=33 Identities=6% Similarity=0.002 Sum_probs=28.2
Q ss_pred ccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 188 NRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 188 ~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
++++-.+.|| +++|.|+.||||||||++|..+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 3566677788 99999999999999999998763
No 80
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.56 E-value=2.6e-05 Score=76.08 Aligned_cols=33 Identities=18% Similarity=0.111 Sum_probs=29.1
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.|++++ .++||+++.|+||.|||||||||+|+-
T Consensus 93 ~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 93 KLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred eecCCC-CCCCCCEEEEECCCCChHHHHHHHHhc
Confidence 566666 689999999999999999999999874
No 81
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.56 E-value=1.3e-05 Score=70.94 Aligned_cols=26 Identities=12% Similarity=-0.102 Sum_probs=24.1
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
++|+++.|+|++|||||||+|.|.-+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999998754
No 82
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.56 E-value=3.7e-05 Score=77.19 Aligned_cols=38 Identities=11% Similarity=-0.066 Sum_probs=34.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
..|++|++-. ++|++++|+||.|||||||||+|+++++
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 4589999988 9999999999999999999999998764
No 83
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.55 E-value=1.7e-05 Score=67.20 Aligned_cols=33 Identities=6% Similarity=-0.060 Sum_probs=29.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.++++++..+.+| ++|.||||+|||||+|+|+-
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHH
Confidence 5788999888888 88999999999999999874
No 84
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.55 E-value=1.9e-05 Score=72.16 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=28.3
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+|+++ .++||.+++|.||+||||||||++|.=.
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 56666 6789999999999999999999998643
No 85
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.53 E-value=3.8e-05 Score=61.29 Aligned_cols=34 Identities=9% Similarity=-0.075 Sum_probs=28.8
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
....|+++ +|+.+++.||||+|||||+++|+-.+
T Consensus 27 ~~~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 27 LVYVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp HHHHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred HHHHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567777 89999999999999999999988654
No 86
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.50 E-value=1.7e-05 Score=74.82 Aligned_cols=34 Identities=6% Similarity=-0.140 Sum_probs=30.6
Q ss_pred ccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 188 NRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 188 ~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.|+|-.+++|+.++|+||.|||||||||+|+=++
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4788889999999999999999999999997554
No 87
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.50 E-value=5.1e-05 Score=67.95 Aligned_cols=27 Identities=11% Similarity=-0.185 Sum_probs=25.0
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+++|+++.|+||+|||||||+|.|.-+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 689999999999999999999998765
No 88
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.49 E-value=2.2e-05 Score=67.68 Aligned_cols=35 Identities=6% Similarity=-0.108 Sum_probs=30.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..++++++..+.+| ++|.||||+|||||+|+|+-.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence 35788999888888 889999999999999998743
No 89
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.47 E-value=3.4e-05 Score=70.21 Aligned_cols=36 Identities=3% Similarity=-0.186 Sum_probs=33.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.+|+++ -.|.+|+.+.|+|++|||||||||.|+=+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5689999 99999999999999999999999998754
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.47 E-value=3.2e-05 Score=62.17 Aligned_cols=28 Identities=4% Similarity=-0.228 Sum_probs=24.4
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
+.+|+.++|.||||+|||||+++|+-.+
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999987544
No 91
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.44 E-value=5.3e-05 Score=67.54 Aligned_cols=33 Identities=6% Similarity=-0.193 Sum_probs=28.9
Q ss_pred ccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 188 NRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 188 ~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
++++-.+++|++++++||+||||||+++.|+-+
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 456666899999999999999999999998755
No 92
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.44 E-value=6.3e-05 Score=73.37 Aligned_cols=35 Identities=6% Similarity=-0.117 Sum_probs=30.7
Q ss_pred cccccceeEEeCC-----eEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVSGILKPG-----SVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVSGiiKPG-----eMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|+|++-.+++| |++.|+||.|||||||||+|+=
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHT
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhc
Confidence 4688888888887 7899999999999999999873
No 93
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.43 E-value=3.4e-05 Score=72.32 Aligned_cols=36 Identities=6% Similarity=-0.112 Sum_probs=33.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+|+++ -.|.+|+.+.|+|++|||||||||.|+=+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5689999 99999999999999999999999998753
No 94
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.43 E-value=6.1e-05 Score=63.80 Aligned_cols=23 Identities=9% Similarity=-0.380 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+++.+.|+|+|||||||++|.|+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999998
No 95
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.42 E-value=1.7e-05 Score=75.73 Aligned_cols=35 Identities=6% Similarity=-0.075 Sum_probs=32.1
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..++++++-.+++|+.++|+||+||||||||++|.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHG
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999999999999999874
No 96
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.37 E-value=5.7e-05 Score=70.36 Aligned_cols=40 Identities=8% Similarity=-0.009 Sum_probs=35.5
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
-...|+++.|-+.||++++|.||||+|||||+..++.-+.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4667999999899999999999999999999998877554
No 97
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.36 E-value=4.6e-05 Score=68.77 Aligned_cols=36 Identities=6% Similarity=-0.155 Sum_probs=32.0
Q ss_pred cccccceeEEeC--CeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKP--GSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKP--GeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+.+.|+-.|++ |+.+.|+|++|||||||+|.|+=+
T Consensus 156 ~~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 156 QYWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp GGGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 356788999999 999999999999999999998754
No 98
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.35 E-value=1.7e-05 Score=70.81 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=30.6
Q ss_pred cccccceeEEeCC-------eEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPG-------SVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPG-------eMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.++++++-.+++| +.+++.||||+|||||+|+|+=.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4777787777766 78999999999999999999754
No 99
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.35 E-value=8.8e-05 Score=74.18 Aligned_cols=36 Identities=11% Similarity=-0.000 Sum_probs=32.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
..|++|++-. |++++|+||.|||||||||+|+.+++
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 4688899876 99999999999999999999998765
No 100
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.33 E-value=9e-05 Score=70.24 Aligned_cols=35 Identities=17% Similarity=0.001 Sum_probs=29.7
Q ss_pred cccc-eeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 187 LNRV-SGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 187 L~dV-SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
|+.+ +|-|.||++++|.|+||||||||++.++-..
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3443 6789999999999999999999999987653
No 101
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.33 E-value=4.5e-05 Score=61.83 Aligned_cols=32 Identities=6% Similarity=-0.191 Sum_probs=27.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+|++ -.+.+|..+.|+|+||||||||++.|.
T Consensus 16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 46777 447899999999999999999999874
No 102
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.31 E-value=0.0001 Score=75.91 Aligned_cols=39 Identities=13% Similarity=-0.115 Sum_probs=35.0
Q ss_pred ccccccceeEEeC-------CeEEEEecCCCCCchhHHHHHHHHHH
Q 037424 184 INILNRVSGILKP-------GSVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 184 ~~IL~dVSGiiKP-------GeMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
..|++|++-.+.+ |++++|.||.|||||||||+|.++++
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iGl~~~ 814 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAV 814 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 4589999998887 99999999999999999999977664
No 103
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.30 E-value=6.9e-05 Score=69.54 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=29.1
Q ss_pred cccc-eeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 187 LNRV-SGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 187 L~dV-SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
|+.+ .|=|.||++++|.||||||||||++.|++.+
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 4443 3678999999999999999999999886544
No 104
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.29 E-value=0.00012 Score=70.27 Aligned_cols=33 Identities=12% Similarity=-0.177 Sum_probs=30.1
Q ss_pred ccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 188 NRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 188 ~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+++|-.+++|++++|+|++|||||||++.|+-+
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHH
Confidence 578888999999999999999999999998754
No 105
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.21 E-value=0.0002 Score=65.46 Aligned_cols=36 Identities=11% Similarity=-0.025 Sum_probs=32.7
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
..+++++-.+.|| ++.++||.||||||+|++|..+.
T Consensus 15 ~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 15 RNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp TTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 3568999999999 99999999999999999998764
No 106
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.20 E-value=0.00012 Score=62.87 Aligned_cols=30 Identities=10% Similarity=-0.124 Sum_probs=24.1
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
++++++ ++|+++.|.|++||||||++|.|+
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHH
Confidence 455544 789999999999999999999998
No 107
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.19 E-value=0.00012 Score=64.98 Aligned_cols=38 Identities=11% Similarity=-0.092 Sum_probs=32.9
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
..-|+++.|=+.||++++|-|+||+|||||+..++.-+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45688888889999999999999999999988877544
No 108
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.17 E-value=0.00019 Score=65.75 Aligned_cols=32 Identities=6% Similarity=-0.204 Sum_probs=28.2
Q ss_pred cceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 189 RVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 189 dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+++-.++||++++|+||+||||||+++.|+-+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 45556889999999999999999999998865
No 109
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.17 E-value=0.00013 Score=74.83 Aligned_cols=34 Identities=6% Similarity=-0.001 Sum_probs=32.0
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
++|+|||-.|++|+++.|+|+.|||||||+|.|.
T Consensus 656 ~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 656 HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4699999999999999999999999999999964
No 110
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.16 E-value=0.0003 Score=71.73 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=34.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHH-HHHHHHHHHHh
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQ-VLFLLVLWCLH 226 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK-~L~~~~~~~~~ 226 (231)
.+.|+|||-.|++|+++.|+|+.|||||||++ +|+=.++.+++
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~ 640 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLH 640 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHH
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhc
Confidence 35699999999999999999999999999984 34333444443
No 111
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.13 E-value=8.9e-05 Score=74.96 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=32.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHH-HH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQV-LF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~-L~ 218 (231)
...|+|||-.|++|+++.|.|+.|||||||+|. |+
T Consensus 510 ~~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~ 545 (842)
T 2vf7_A 510 RNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALV 545 (842)
T ss_dssp ETTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCH
T ss_pred ecccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHH
Confidence 357999999999999999999999999999996 54
No 112
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.12 E-value=0.00013 Score=74.75 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=32.1
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.|+|||-.|++|+++.|+|+.|||||||++.|.
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4699999999999999999999999999999964
No 113
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.07 E-value=0.00028 Score=64.61 Aligned_cols=30 Identities=7% Similarity=-0.222 Sum_probs=26.7
Q ss_pred eEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 192 GILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
|=+.||++++|.||||||||||+..++..+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999887654
No 114
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.00 E-value=0.00035 Score=62.31 Aligned_cols=25 Identities=16% Similarity=-0.031 Sum_probs=23.2
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+|++++|+||+||||||+++.|+-+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 7899999999999999999999854
No 115
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.99 E-value=0.0003 Score=64.57 Aligned_cols=31 Identities=10% Similarity=0.157 Sum_probs=25.8
Q ss_pred cccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 187 LNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 187 L~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
|++++-. .+|+.+.|+|+||+|||||+|+|.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHh
Confidence 4455543 389999999999999999999986
No 116
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.99 E-value=0.00042 Score=62.56 Aligned_cols=26 Identities=8% Similarity=-0.224 Sum_probs=24.2
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+||++++++||+||||||+++.|+-+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999864
No 117
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.98 E-value=0.0003 Score=62.10 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+|+++.++|||||||||||++|.
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHS
T ss_pred cCCeEEEECCCCCcHHHHHHHhc
Confidence 68899999999999999999986
No 118
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.97 E-value=0.00026 Score=64.46 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=33.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
..-|+.+.|=+.||++++|.||||+|||||+..++.-+
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 55678888889999999999999999999998887654
No 119
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.97 E-value=0.00027 Score=60.46 Aligned_cols=33 Identities=6% Similarity=-0.157 Sum_probs=26.3
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++++.+ ..+++.+++|.|+|||||||+.+.|+=
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444444 456778999999999999999999864
No 120
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.96 E-value=0.00024 Score=66.22 Aligned_cols=32 Identities=6% Similarity=-0.255 Sum_probs=29.9
Q ss_pred cccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 187 LNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 187 L~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
-++++-.+++|+.+.|+|+|||||||||++|.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Ls 178 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMT 178 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence 37999999999999999999999999999874
No 121
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.96 E-value=0.00034 Score=61.92 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+|+++.|+|++|||||||+|+|.
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999999987
No 122
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.95 E-value=0.00011 Score=65.09 Aligned_cols=38 Identities=11% Similarity=-0.002 Sum_probs=32.4
Q ss_pred ccccccceeEEeCCeE--EEEecCCCCCchhHHHHHHHHH
Q 037424 184 INILNRVSGILKPGSV--NLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeM--TLVLGrPGSGcSTlLK~L~~~~ 221 (231)
..+++.++-.++.|++ +|+.||||+||||++++++=..
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3477778888888998 9999999999999999987654
No 123
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.93 E-value=0.0001 Score=66.15 Aligned_cols=24 Identities=0% Similarity=-0.110 Sum_probs=22.4
Q ss_pred eCCeEEEEecCCCCCchhHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+|+++.|+|+||+|||||+|+|.
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHhc
Confidence 479999999999999999999985
No 124
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.91 E-value=0.00022 Score=63.99 Aligned_cols=37 Identities=5% Similarity=-0.126 Sum_probs=31.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..++++++-.+++|..+.++|+||+|||||++.|+-.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4577777777789999999999999999999998643
No 125
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.91 E-value=0.00041 Score=64.71 Aligned_cols=29 Identities=14% Similarity=0.031 Sum_probs=25.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.+|+|++-.| +|+|++|+|||||+++|+
T Consensus 24 ~~vl~~vsf~I------~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 24 KSVKRGFEFTL------MVVGESGLGKSTLINSLF 52 (418)
T ss_dssp TTCC-CCCEEE------EEECCTTSSHHHHHHHHT
T ss_pred EEEecCCCEEE------EEECCCCCcHHHHHHHHh
Confidence 56899999887 899999999999999986
No 126
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.90 E-value=0.00069 Score=53.90 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=22.7
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
+.|| +++|.||.||||||+|++|..+.
T Consensus 21 f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 21 FKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 3344 99999999999999999998743
No 127
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.87 E-value=0.0005 Score=62.36 Aligned_cols=30 Identities=17% Similarity=-0.165 Sum_probs=26.1
Q ss_pred eEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 192 GILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
|=+.||++++|.||||||||||+..++.-+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999988876544
No 128
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.80 E-value=0.00043 Score=64.19 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=33.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
..-|+.+.|=+.||++++|.||||+|||||...++.-+.
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456888888899999999999999999999988876554
No 129
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.79 E-value=0.00062 Score=61.50 Aligned_cols=25 Identities=0% Similarity=-0.433 Sum_probs=22.2
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+++..+.|+|+|||||||||+.|.-
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4677899999999999999999874
No 130
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.79 E-value=0.00048 Score=58.23 Aligned_cols=31 Identities=10% Similarity=-0.022 Sum_probs=21.1
Q ss_pred cccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 187 LNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 187 L~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++++++.+.+| +|+.||||+||||+.|+|+-
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHH
Confidence 44554444444 88999999999999999874
No 131
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.79 E-value=0.00033 Score=66.93 Aligned_cols=36 Identities=6% Similarity=-0.025 Sum_probs=30.1
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.++++++..+ ||+.+|+.||||+|||||+|+|+-..
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3566777666 89999999999999999999997543
No 132
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.77 E-value=0.00061 Score=61.23 Aligned_cols=34 Identities=9% Similarity=-0.003 Sum_probs=28.8
Q ss_pred cccce-eEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 187 LNRVS-GILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 187 L~dVS-GiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
|+.+- |-+.+|++++|.||||||||||+..++.-
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44443 67999999999999999999999988764
No 133
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.76 E-value=0.00047 Score=65.75 Aligned_cols=34 Identities=6% Similarity=-0.086 Sum_probs=29.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.++++++..+.+| +||.||||+|||||+|+|+-.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHH
Confidence 4688999888888 889999999999999998743
No 134
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.74 E-value=0.00072 Score=55.88 Aligned_cols=35 Identities=11% Similarity=-0.033 Sum_probs=28.1
Q ss_pred cccccce-eEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 185 NILNRVS-GILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 185 ~IL~dVS-GiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.-|+++- |=+.||++++|-|+||+|||||.--++.
T Consensus 17 ~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 17 PGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3466654 5689999999999999999999866554
No 135
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.73 E-value=0.00069 Score=60.80 Aligned_cols=35 Identities=3% Similarity=-0.237 Sum_probs=29.7
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
++++++-.+++|++++|.|++|+||||++..|+..
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44677777899999999999999999999998864
No 136
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.66 E-value=0.00068 Score=62.36 Aligned_cols=30 Identities=0% Similarity=-0.159 Sum_probs=26.5
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFLLVLW 223 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~~~~~ 223 (231)
+.+|+++.|+||.||||||||++|+.+.-.
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 567899999999999999999999987543
No 137
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.65 E-value=0.00037 Score=62.90 Aligned_cols=22 Identities=14% Similarity=-0.123 Sum_probs=19.9
Q ss_pred EEEEecCCCCCchhHHHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~~~ 220 (231)
++.|.|++|||||||++.|.-+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8899999999999999998654
No 138
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.64 E-value=0.00057 Score=60.73 Aligned_cols=35 Identities=9% Similarity=-0.118 Sum_probs=29.1
Q ss_pred ccccce-eEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 186 ILNRVS-GILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 186 IL~dVS-GiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
-|+.+- |-+.+|++++|.|+||||||||...++.-
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 355543 67899999999999999999999887754
No 139
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.63 E-value=0.00098 Score=56.57 Aligned_cols=26 Identities=4% Similarity=-0.185 Sum_probs=23.0
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+++|.+..+.|+|||||||+++.|.=
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 45788999999999999999999864
No 140
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.59 E-value=0.00077 Score=59.38 Aligned_cols=35 Identities=17% Similarity=0.004 Sum_probs=28.9
Q ss_pred ccccce-eEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 186 ILNRVS-GILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 186 IL~dVS-GiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
-|+.+- |-+.||++++|.|+||||||||...++.-
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344444 67899999999999999999999887754
No 141
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.58 E-value=0.0012 Score=57.96 Aligned_cols=23 Identities=9% Similarity=-0.065 Sum_probs=20.8
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
++.+++|.|+|||||||+.+.|+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999985
No 142
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.58 E-value=0.00088 Score=54.07 Aligned_cols=20 Identities=0% Similarity=-0.248 Sum_probs=18.0
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
.++|+|++|||||||++.|.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 46899999999999999875
No 143
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.57 E-value=0.00034 Score=67.48 Aligned_cols=37 Identities=8% Similarity=-0.218 Sum_probs=33.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..++++++-.+++|+.+++.||||+|||||+|+|+-+
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 4577889999999999999999999999999999753
No 144
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.53 E-value=0.001 Score=58.23 Aligned_cols=26 Identities=8% Similarity=-0.192 Sum_probs=23.5
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++|++-+|+.||||+||||+.|+|+-
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHH
Confidence 57888899999999999999999874
No 145
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.48 E-value=0.00088 Score=57.60 Aligned_cols=26 Identities=8% Similarity=-0.289 Sum_probs=22.7
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
-.|+.-+|+.||||+||||+.++|+=
T Consensus 51 ~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 51 RAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 35778889999999999999999863
No 146
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.45 E-value=0.00072 Score=65.22 Aligned_cols=28 Identities=11% Similarity=-0.104 Sum_probs=25.5
Q ss_pred EEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 193 ILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 193 iiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+++|+++.|+|++||||||++|.|+=.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHh
Confidence 4789999999999999999999999754
No 147
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.41 E-value=0.0014 Score=55.87 Aligned_cols=24 Identities=8% Similarity=-0.273 Sum_probs=19.9
Q ss_pred eCCeEEEEecCCCCCchhHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+..++.+|+|||||||+|.-+.|+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 444677899999999999988775
No 148
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.36 E-value=0.0017 Score=52.91 Aligned_cols=25 Identities=0% Similarity=-0.369 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
++.-++|.||||+|||||++.++--
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5678899999999999999988754
No 149
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.35 E-value=0.0012 Score=61.72 Aligned_cols=39 Identities=10% Similarity=-0.099 Sum_probs=32.9
Q ss_pred cccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 183 KINILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 183 ~~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
-..-|+.+.|=+.||++++|-||||+|||||.--++.-+
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 355688888779999999999999999999987776644
No 150
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.32 E-value=0.002 Score=50.04 Aligned_cols=25 Identities=4% Similarity=-0.245 Sum_probs=20.8
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+..++|.|+||+||||+++.++=-
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999988654
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.22 E-value=0.0027 Score=56.64 Aligned_cols=28 Identities=11% Similarity=-0.102 Sum_probs=24.9
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.++|+++++.|+|||||||+++.|+-..
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 5789999999999999999999998543
No 152
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.22 E-value=0.002 Score=54.90 Aligned_cols=26 Identities=8% Similarity=-0.185 Sum_probs=22.0
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++++.-+|+.||||+||||+.++|+-
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 35666789999999999999999863
No 153
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.13 E-value=0.0012 Score=62.38 Aligned_cols=36 Identities=17% Similarity=-0.009 Sum_probs=32.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+..+++++-.+.|| ++++.|+.||||||||++|.++
T Consensus 48 f~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp BTTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ccceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 44678888889999 9999999999999999999876
No 154
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.10 E-value=0.003 Score=55.92 Aligned_cols=26 Identities=8% Similarity=-0.233 Sum_probs=23.5
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
++|++++++|++||||||+++.|+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999998854
No 155
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.08 E-value=0.0031 Score=55.70 Aligned_cols=27 Identities=4% Similarity=-0.338 Sum_probs=23.2
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
+++.++.|.|++|||||||.+.|.-..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999886543
No 156
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.06 E-value=0.0024 Score=55.77 Aligned_cols=26 Identities=12% Similarity=-0.095 Sum_probs=22.6
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+++.++|.||||+|||||++.++=.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999987643
No 157
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.04 E-value=0.0021 Score=57.05 Aligned_cols=28 Identities=11% Similarity=-0.238 Sum_probs=24.1
Q ss_pred eEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 192 GILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
|..+|.+-+|+.||||+|||+|.++++=
T Consensus 40 ~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 40 GKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp TTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 4467888889999999999999998874
No 158
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.03 E-value=0.0033 Score=54.01 Aligned_cols=26 Identities=15% Similarity=-0.083 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
|..-+|+.||||+||||+.+.|+-..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHH
Confidence 55678999999999999999988654
No 159
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.01 E-value=0.0033 Score=50.34 Aligned_cols=24 Identities=8% Similarity=-0.107 Sum_probs=20.5
Q ss_pred eEEEEecCCCCCchhHHHHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
..++|.|+||+||||+++.++=-.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999987443
No 160
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.01 E-value=0.0032 Score=52.63 Aligned_cols=25 Identities=8% Similarity=-0.314 Sum_probs=21.0
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++..-+|+.||||+|||++.++|+-
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4455678999999999999999864
No 161
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.00 E-value=0.00045 Score=59.36 Aligned_cols=24 Identities=4% Similarity=-0.187 Sum_probs=21.4
Q ss_pred eEEEEecCCCCCchhHHHHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
++++|+||+||||||||++|+-+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 678899999999999999998753
No 162
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.99 E-value=0.0036 Score=53.20 Aligned_cols=23 Identities=9% Similarity=-0.330 Sum_probs=19.9
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
++-...|.|+|||||||+-+.|+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45567899999999999999886
No 163
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.0031 Score=49.98 Aligned_cols=21 Identities=5% Similarity=-0.102 Sum_probs=18.5
Q ss_pred eEEEEecCCCCCchhHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~ 218 (231)
-.++|+|+||+|||||++.|.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 367899999999999999875
No 164
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.97 E-value=0.0039 Score=56.77 Aligned_cols=35 Identities=11% Similarity=-0.091 Sum_probs=27.8
Q ss_pred cccce--eEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 187 LNRVS--GILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 187 L~dVS--GiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
|+.+- |=+.||++++|.|+||+|||||...++.-+
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44443 458899999999999999999987776543
No 165
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.91 E-value=0.0034 Score=54.88 Aligned_cols=26 Identities=8% Similarity=-0.300 Sum_probs=21.7
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+++...+|+-||||+|||++.++|+=
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34556788889999999999999874
No 166
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.90 E-value=0.0012 Score=58.01 Aligned_cols=20 Identities=10% Similarity=-0.295 Sum_probs=18.5
Q ss_pred EEEecCCCCCchhHHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~~ 219 (231)
+|+.||||+||||+++.|+=
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998875
No 167
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.90 E-value=0.0036 Score=57.02 Aligned_cols=28 Identities=7% Similarity=-0.136 Sum_probs=24.7
Q ss_pred eEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 192 GILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
|-+.||..++|.||||+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5577899999999999999999988764
No 168
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.85 E-value=0.0037 Score=52.24 Aligned_cols=19 Identities=5% Similarity=-0.316 Sum_probs=17.2
Q ss_pred EEEecCCCCCchhHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~ 218 (231)
++|+|+||+|||||++.|.
T Consensus 32 i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 32 IVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 5788999999999999875
No 169
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.78 E-value=0.0041 Score=54.62 Aligned_cols=25 Identities=4% Similarity=-0.300 Sum_probs=21.2
Q ss_pred eCCe--EEEEecCCCCCchhHHHHHHH
Q 037424 195 KPGS--VNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 195 KPGe--MTLVLGrPGSGcSTlLK~L~~ 219 (231)
.++. .++|.||||+|||||++.++=
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3455 899999999999999998864
No 170
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.78 E-value=0.0036 Score=48.78 Aligned_cols=25 Identities=4% Similarity=-0.190 Sum_probs=20.6
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+.-++|.|+||+||||+++.++--
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456689999999999999988654
No 171
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.78 E-value=0.0027 Score=60.11 Aligned_cols=32 Identities=13% Similarity=-0.065 Sum_probs=25.2
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++++++..+..| +|+.||||+|||||.|+|+=
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHH
Confidence 456666655555 78999999999999999874
No 172
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.75 E-value=0.0051 Score=49.77 Aligned_cols=24 Identities=0% Similarity=-0.310 Sum_probs=20.4
Q ss_pred eEEEEecCCCCCchhHHHHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.-+++.|+||+|||||++.|+--+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999887543
No 173
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.74 E-value=0.0021 Score=60.23 Aligned_cols=37 Identities=11% Similarity=-0.094 Sum_probs=30.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..-|+.+.|=+.||++++|-|+||+|||||.--++.-
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 4456777666999999999999999999998776653
No 174
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.72 E-value=0.0029 Score=57.36 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=25.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.++++++-.| +|+|++|+|||||++.||.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTT
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhC
Confidence 45777877765 8999999999999999864
No 175
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.68 E-value=0.0056 Score=55.23 Aligned_cols=26 Identities=12% Similarity=-0.240 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.+.-++|+|+||||||||+|.|....
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 44567899999999999999987654
No 176
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.66 E-value=0.0043 Score=62.06 Aligned_cols=27 Identities=11% Similarity=-0.230 Sum_probs=24.5
Q ss_pred EEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 193 ILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 193 iiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.++||+-+||.||||+|||||+|+|+=
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 378999999999999999999999863
No 177
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.57 E-value=0.0067 Score=55.46 Aligned_cols=30 Identities=7% Similarity=-0.105 Sum_probs=25.6
Q ss_pred eEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 192 GILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
|=+.+|++++|.||||+|||||.-.++.-+
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 357899999999999999999987776543
No 178
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.51 E-value=0.0087 Score=52.72 Aligned_cols=32 Identities=9% Similarity=-0.248 Sum_probs=26.4
Q ss_pred ccceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 188 NRVSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 188 ~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
++++-. +|+++.+.|++|+||||+++.|+-+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445444 89999999999999999999998654
No 179
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.50 E-value=0.0048 Score=53.87 Aligned_cols=25 Identities=4% Similarity=-0.406 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
++.-+++.||||+|||||++.|+-.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457889999999999999998753
No 180
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.48 E-value=0.0064 Score=53.51 Aligned_cols=28 Identities=7% Similarity=-0.167 Sum_probs=23.7
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
..||.-+|+.||||+|||++.+.++=.+
T Consensus 67 ~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 67 KIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567889999999999999999987543
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.47 E-value=0.0067 Score=52.08 Aligned_cols=27 Identities=11% Similarity=-0.233 Sum_probs=22.2
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
+|+.-+|+.||||+|||++.+.++=.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 455568899999999999999887543
No 182
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.43 E-value=0.0058 Score=53.42 Aligned_cols=26 Identities=19% Similarity=-0.037 Sum_probs=22.2
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.++..++|.||||+||||+++.++=-
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999999988743
No 183
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.41 E-value=0.0069 Score=48.38 Aligned_cols=19 Identities=0% Similarity=-0.321 Sum_probs=17.2
Q ss_pred EEEecCCCCCchhHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~ 218 (231)
.+|+|+||+|||||++.|.
T Consensus 31 i~v~G~~~vGKSsli~~l~ 49 (196)
T 2atv_A 31 LAIFGRAGVGKSALVVRFL 49 (196)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999999875
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.40 E-value=0.0057 Score=54.72 Aligned_cols=32 Identities=9% Similarity=-0.114 Sum_probs=23.2
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
...|++++-.+. .+.|+|++||||||||++|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~ 55 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIV 55 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHh
Confidence 347788877664 77888999999999999985
No 185
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.33 E-value=0.0075 Score=48.41 Aligned_cols=20 Identities=5% Similarity=-0.187 Sum_probs=17.7
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-++|+|+||+|||||++.|.
T Consensus 30 ki~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 45789999999999999885
No 186
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.32 E-value=0.0065 Score=55.95 Aligned_cols=23 Identities=13% Similarity=-0.116 Sum_probs=20.5
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.++++|.|+|||||||+.+.|+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999875
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.31 E-value=0.0061 Score=53.63 Aligned_cols=26 Identities=15% Similarity=-0.185 Sum_probs=22.3
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|..-+|+.||||+|||++.++++=
T Consensus 48 ~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 48 RKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 45667789999999999999999864
No 188
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.24 E-value=0.0084 Score=47.56 Aligned_cols=21 Identities=10% Similarity=-0.373 Sum_probs=18.6
Q ss_pred EEEecCCCCCchhHHHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~~~ 220 (231)
++|.|+||+||||+++.++=-
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988643
No 189
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.19 E-value=0.0082 Score=47.99 Aligned_cols=19 Identities=0% Similarity=-0.200 Sum_probs=17.1
Q ss_pred EEEecCCCCCchhHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~ 218 (231)
++|+|+||+|||||++.|.
T Consensus 29 i~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEECSTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5789999999999999874
No 190
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.15 E-value=0.0066 Score=58.83 Aligned_cols=21 Identities=10% Similarity=-0.257 Sum_probs=18.8
Q ss_pred EEEecCCCCCchhHHHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.|+|++||||||||++|.-+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSC
T ss_pred EEEECCCCChHHHHHHHHhCC
Confidence 789999999999999998743
No 191
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.09 E-value=0.0092 Score=49.93 Aligned_cols=27 Identities=15% Similarity=-0.100 Sum_probs=22.0
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
..|+.+++.|++||||||++..+.+-.
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~ 100 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDD 100 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcc
Confidence 457899999999999999888665443
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.09 E-value=0.01 Score=48.23 Aligned_cols=22 Identities=0% Similarity=-0.434 Sum_probs=18.8
Q ss_pred eEEEEecCCCCCchhHHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..++|+|+||+|||||++.|.-
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3678899999999999998763
No 193
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.09 E-value=0.007 Score=56.11 Aligned_cols=28 Identities=11% Similarity=-0.238 Sum_probs=23.8
Q ss_pred eEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 192 GILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 192 GiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
|..+|..-+|+.||||+|||+|.++|+-
T Consensus 162 ~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 162 GKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp GGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456777889999999999999999874
No 194
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.06 E-value=0.009 Score=47.97 Aligned_cols=18 Identities=17% Similarity=-0.025 Sum_probs=16.7
Q ss_pred EEEecCCCCCchhHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L 217 (231)
++|+|+||+|||||++.+
T Consensus 32 i~v~G~~~vGKSsLi~~l 49 (192)
T 2b6h_A 32 ILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999999987
No 195
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.04 E-value=0.011 Score=50.25 Aligned_cols=26 Identities=8% Similarity=-0.162 Sum_probs=21.7
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
++..-+|+.||||+|||++.+.|+-.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45567889999999999999988753
No 196
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.04 E-value=0.008 Score=53.97 Aligned_cols=26 Identities=15% Similarity=-0.185 Sum_probs=22.1
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+|..-+|+.||||+|||+|.++|+-
T Consensus 81 ~~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 81 RKPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHH
Confidence 45666788999999999999998874
No 197
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.03 E-value=0.0049 Score=52.09 Aligned_cols=20 Identities=5% Similarity=-0.398 Sum_probs=18.2
Q ss_pred EEEecCCCCCchhHHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~~ 219 (231)
+|+.||||+|||+|.++|+-
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 67889999999999999864
No 198
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.03 E-value=0.0098 Score=48.63 Aligned_cols=19 Identities=5% Similarity=-0.136 Sum_probs=17.2
Q ss_pred EEEecCCCCCchhHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~ 218 (231)
++|+|+||+|||||++.|.
T Consensus 31 i~vvG~~~vGKSsLi~~l~ 49 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFA 49 (205)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5789999999999999875
No 199
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.02 E-value=0.011 Score=51.99 Aligned_cols=25 Identities=24% Similarity=-0.130 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
++..++|.||||+||||+++.++=-
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998743
No 200
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.01 E-value=0.0095 Score=54.93 Aligned_cols=20 Identities=5% Similarity=-0.062 Sum_probs=17.9
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-+.|+|+||+|||||++.|.
T Consensus 182 kvaivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHh
Confidence 56789999999999999875
No 201
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.98 E-value=0.011 Score=45.86 Aligned_cols=22 Identities=5% Similarity=-0.283 Sum_probs=18.9
Q ss_pred CeEEEEecCCCCCchhHHHHHH
Q 037424 197 GSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.=+|+.|+||+|||++.++|.
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 3447899999999999999875
No 202
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.97 E-value=0.011 Score=53.80 Aligned_cols=22 Identities=5% Similarity=-0.248 Sum_probs=19.1
Q ss_pred eEEEEecCCCCCchhHHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~~ 219 (231)
--+||||.+|||||||+|-+-|
T Consensus 34 ~killlG~~~SGKST~~kq~~i 55 (362)
T 1zcb_A 34 VKILLLGAGESGKSTFLKQMRI 55 (362)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 4578999999999999999853
No 203
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.97 E-value=0.011 Score=48.36 Aligned_cols=19 Identities=5% Similarity=-0.263 Sum_probs=17.2
Q ss_pred EEEecCCCCCchhHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~ 218 (231)
++|+|+||+|||||++.|.
T Consensus 37 i~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5788999999999999875
No 204
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.94 E-value=0.011 Score=48.34 Aligned_cols=19 Identities=0% Similarity=-0.332 Sum_probs=17.1
Q ss_pred EEEecCCCCCchhHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~ 218 (231)
++|+|+||+|||||++.|.
T Consensus 29 i~lvG~~~vGKSsLi~~l~ 47 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999999875
No 205
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.94 E-value=0.0098 Score=50.79 Aligned_cols=20 Identities=5% Similarity=-0.252 Sum_probs=17.8
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-++|+|+||+|||||++.|.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~ 47 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFV 47 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHH
Confidence 46788999999999999985
No 206
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.94 E-value=0.014 Score=51.68 Aligned_cols=31 Identities=10% Similarity=-0.261 Sum_probs=24.7
Q ss_pred ceeEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 190 VSGILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 190 VSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
++-.++ |+++++.|+||+||||++..|+...
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 333345 8999999999999999999987543
No 207
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.93 E-value=0.0093 Score=49.20 Aligned_cols=20 Identities=0% Similarity=-0.067 Sum_probs=17.4
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-.+|+|+||+|||||++.|.
T Consensus 31 kI~vvG~~~vGKSsLin~l~ 50 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVS 50 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 35789999999999999874
No 208
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.91 E-value=0.011 Score=50.24 Aligned_cols=22 Identities=14% Similarity=-0.168 Sum_probs=18.9
Q ss_pred eEEEEecCCCCCchhHHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.-+|+.||||+|||++.+.|+-
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3567889999999999998864
No 209
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.87 E-value=0.0089 Score=53.57 Aligned_cols=25 Identities=8% Similarity=-0.303 Sum_probs=21.7
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+|..-+||.||||+|||++.++|+-
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 5666789999999999999999863
No 210
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.85 E-value=0.012 Score=56.38 Aligned_cols=31 Identities=16% Similarity=-0.065 Sum_probs=26.4
Q ss_pred EEeCCeEEEEecCCCCCchhHHHHHHHHHHH
Q 037424 193 ILKPGSVNLADCLTFLHPLDVFQVLFLLVLW 223 (231)
Q Consensus 193 iiKPGeMTLVLGrPGSGcSTlLK~L~~~~~~ 223 (231)
-+..+.-+||.|.+||||||+|++|.+-++.
T Consensus 163 dL~~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 163 DLAKMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp EGGGSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EcccCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3456788999999999999999999876664
No 211
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.84 E-value=0.012 Score=53.63 Aligned_cols=20 Identities=15% Similarity=-0.149 Sum_probs=18.2
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
.+.|+|+||+||||||+.|.
T Consensus 181 ~V~lvG~~naGKSTLln~L~ 200 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLT 200 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999986
No 212
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.83 E-value=0.012 Score=47.51 Aligned_cols=19 Identities=11% Similarity=-0.265 Sum_probs=17.2
Q ss_pred EEEecCCCCCchhHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~ 218 (231)
++|+|+||+|||||++.|.
T Consensus 32 i~vvG~~~vGKSsli~~l~ 50 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFK 50 (201)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 5789999999999999874
No 213
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.77 E-value=0.013 Score=50.99 Aligned_cols=22 Identities=9% Similarity=-0.278 Sum_probs=19.6
Q ss_pred EEEecCCCCCchhHHHHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~~~~ 221 (231)
+|+.||||+||||+.+.|+=..
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987654
No 214
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.72 E-value=0.013 Score=47.41 Aligned_cols=20 Identities=0% Similarity=-0.328 Sum_probs=17.2
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-.+|+|+||+|||||++.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~ 51 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYT 51 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 45789999999999998764
No 215
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.63 E-value=0.013 Score=52.44 Aligned_cols=23 Identities=4% Similarity=-0.115 Sum_probs=19.3
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..-.++|+|+||+|||||++.|.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~ 188 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALT 188 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34467899999999999999874
No 216
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.58 E-value=0.014 Score=49.83 Aligned_cols=20 Identities=5% Similarity=-0.169 Sum_probs=17.8
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-++|+|++|+|||||++.|+
T Consensus 41 ~I~vvG~~g~GKSSLin~l~ 60 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSII 60 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 35788999999999999986
No 217
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.55 E-value=0.034 Score=47.41 Aligned_cols=33 Identities=9% Similarity=-0.187 Sum_probs=25.6
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..++. +.+...|...++.||||||||||...|+
T Consensus 23 ~~lHa-~~v~~~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 23 RSMHG-VLVDIYGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp CCEES-EEEEETTEEEEEECCCTTTTHHHHHHHH
T ss_pred eeeeE-EEEEECCEEEEEECCCCCCHHHHHHHHH
Confidence 34554 4556688999999999999999977664
No 218
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.52 E-value=0.014 Score=54.68 Aligned_cols=32 Identities=9% Similarity=-0.046 Sum_probs=29.2
Q ss_pred cceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 189 RVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 189 dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
|+.--|.+|+..++.|+||+|||||++.|+=.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 88899999999999999999999999987643
No 219
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.49 E-value=0.022 Score=53.35 Aligned_cols=25 Identities=4% Similarity=-0.261 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
++.++++.|+|||||||++..|+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999998854
No 220
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.48 E-value=0.018 Score=53.96 Aligned_cols=26 Identities=8% Similarity=-0.169 Sum_probs=22.6
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++|.+=.|+-||||+|||++-|+|+=
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46777788999999999999999874
No 221
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.46 E-value=0.0072 Score=49.06 Aligned_cols=20 Identities=10% Similarity=-0.184 Sum_probs=17.5
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-++|+|++|+|||||++.|.
T Consensus 31 ~i~v~G~~~~GKSslin~l~ 50 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLC 50 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHh
Confidence 46789999999999999874
No 222
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.45 E-value=0.0084 Score=59.94 Aligned_cols=30 Identities=7% Similarity=-0.303 Sum_probs=25.7
Q ss_pred eeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 191 SGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 191 SGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.-++|++-+|+.||||+|||||.|+|+=.
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 334678999999999999999999999854
No 223
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.34 E-value=0.018 Score=51.26 Aligned_cols=25 Identities=16% Similarity=-0.320 Sum_probs=21.2
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.|+.-+|+.||||+|||++.|+|+=
T Consensus 49 ~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 49 LGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4556678899999999999999874
No 224
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.31 E-value=0.019 Score=46.87 Aligned_cols=20 Identities=5% Similarity=-0.378 Sum_probs=17.6
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
.++|+|.||+|||||++.|.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~ 59 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLI 59 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 56788999999999998875
No 225
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.30 E-value=0.02 Score=46.90 Aligned_cols=19 Identities=16% Similarity=-0.130 Sum_probs=16.9
Q ss_pred EEEecCCCCCchhHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~ 218 (231)
++|+|+||+|||||++.|.
T Consensus 30 i~vvG~~~vGKSsL~~~l~ 48 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLA 48 (214)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 5789999999999999874
No 226
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.30 E-value=0.022 Score=49.49 Aligned_cols=21 Identities=19% Similarity=-0.206 Sum_probs=19.0
Q ss_pred eEEEEecCCCCCchhHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+..|.|+|||||||+.+.|.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999997
No 227
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.29 E-value=0.017 Score=49.68 Aligned_cols=24 Identities=17% Similarity=-0.126 Sum_probs=20.6
Q ss_pred CCeEEEEecCCCCCchhHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+..-+|+.|+||+||||+.+.++-
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 445688999999999999999864
No 228
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.23 E-value=0.019 Score=53.25 Aligned_cols=25 Identities=12% Similarity=-0.217 Sum_probs=21.0
Q ss_pred CeEEEEecCCCCCchhHHHHHHHHH
Q 037424 197 GSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
+.-+++.||||+|||||+++|+-.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999987543
No 229
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.22 E-value=0.023 Score=50.16 Aligned_cols=27 Identities=0% Similarity=-0.347 Sum_probs=22.6
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
++.-+++.||||+|||+|+++|+--+.
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 367788999999999999999876543
No 230
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.10 E-value=0.01 Score=55.98 Aligned_cols=25 Identities=12% Similarity=-0.028 Sum_probs=20.8
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
....++++|.|+|||||||+++.++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~ 182 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRV 182 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHh
Confidence 3455689999999999999998764
No 231
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.10 E-value=0.0093 Score=47.92 Aligned_cols=20 Identities=0% Similarity=-0.328 Sum_probs=17.1
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-.+|+|+||+|||||++.+.
T Consensus 32 ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 36789999999999997764
No 232
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.04 E-value=0.019 Score=49.93 Aligned_cols=20 Identities=10% Similarity=-0.282 Sum_probs=18.4
Q ss_pred EEEecCCCCCchhHHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~~ 219 (231)
+|+.||||+|||++.+.|+-
T Consensus 48 vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 78899999999999999875
No 233
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.04 E-value=0.025 Score=48.53 Aligned_cols=22 Identities=5% Similarity=0.040 Sum_probs=20.0
Q ss_pred CeEEEEecCCCCCchhHHHHHH
Q 037424 197 GSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlLK~L~ 218 (231)
|..++|-|++|+|||||++.++
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHH
Confidence 5799999999999999999875
No 234
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.02 E-value=0.023 Score=50.73 Aligned_cols=26 Identities=19% Similarity=-0.307 Sum_probs=21.3
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.++..-+|+.||||+||||+.+.|+-
T Consensus 69 ~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 69 ELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 34555678899999999999999874
No 235
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.99 E-value=0.025 Score=53.06 Aligned_cols=26 Identities=12% Similarity=-0.151 Sum_probs=22.7
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++|-+=+|+-||||+|||+|-|+|+=
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 56777788899999999999999874
No 236
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.98 E-value=0.0092 Score=47.86 Aligned_cols=19 Identities=5% Similarity=-0.325 Sum_probs=16.5
Q ss_pred EEEEecCCCCCchhHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L 217 (231)
-.+|+|+||+|||||++.|
T Consensus 35 ki~vvG~~~~GKSsli~~l 53 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRF 53 (199)
T ss_dssp EEEEECCTTSCCTTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678999999999999865
No 237
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.95 E-value=0.024 Score=48.28 Aligned_cols=19 Identities=11% Similarity=-0.164 Sum_probs=17.2
Q ss_pred EEEecCCCCCchhHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~ 218 (231)
++|+|.+|+|||||++.|+
T Consensus 39 I~lvG~~g~GKSSLin~l~ 57 (262)
T 3def_A 39 VLVLGKGGVGKSSTVNSLI 57 (262)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5788999999999999885
No 238
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.92 E-value=0.026 Score=52.87 Aligned_cols=26 Identities=4% Similarity=-0.262 Sum_probs=21.8
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++|.+=.|+-||||+|||+|-|+|+=
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 45666678899999999999999874
No 239
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.88 E-value=0.024 Score=49.34 Aligned_cols=20 Identities=10% Similarity=-0.122 Sum_probs=18.0
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-+||.|+||+|||++.+.|+
T Consensus 57 ~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 47899999999999999984
No 240
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.77 E-value=0.029 Score=46.68 Aligned_cols=18 Identities=0% Similarity=-0.226 Sum_probs=16.4
Q ss_pred EEEecCCCCCchhHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L 217 (231)
++|+|+||+|||||++.+
T Consensus 40 VvlvG~~~vGKSSLl~r~ 57 (211)
T 2g3y_A 40 VVLIGEQGVGKSTLANIF 57 (211)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 678999999999999875
No 241
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.72 E-value=0.017 Score=53.90 Aligned_cols=27 Identities=7% Similarity=-0.061 Sum_probs=21.0
Q ss_pred EEeCCeE--EEEecCCCCCchhHHHHHHH
Q 037424 193 ILKPGSV--NLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 193 iiKPGeM--TLVLGrPGSGcSTlLK~L~~ 219 (231)
.++.|++ +|+.||||+||||+.+.|+=
T Consensus 44 ~i~~~~~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 44 AIEAGHLHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp HHHHTCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHcCCCcEEEEECCCCCcHHHHHHHHHH
Confidence 3344444 78889999999999998864
No 242
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.72 E-value=0.026 Score=61.01 Aligned_cols=36 Identities=11% Similarity=-0.103 Sum_probs=29.4
Q ss_pred ccccee--EEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424 187 LNRVSG--ILKPGSVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 187 L~dVSG--iiKPGeMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
|+.+.| =+.||++++|.||||+|||||+..++.-+.
T Consensus 720 LD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 455553 489999999999999999999988876543
No 243
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.71 E-value=0.03 Score=47.20 Aligned_cols=22 Identities=9% Similarity=-0.328 Sum_probs=19.3
Q ss_pred eEEEEecCCCCCchhHHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.-+|+.|+||+|||++.+.|.-
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHH
Confidence 4578999999999999999864
No 244
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.66 E-value=0.019 Score=50.11 Aligned_cols=22 Identities=14% Similarity=-0.111 Sum_probs=19.1
Q ss_pred eEEEEecCCCCCchhHHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.=+|+.||||+|||++.+.|+-
T Consensus 47 ~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4578899999999999999864
No 245
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.65 E-value=0.033 Score=50.77 Aligned_cols=25 Identities=8% Similarity=0.013 Sum_probs=20.3
Q ss_pred eEEeCCeEEEEecCCCCCchhHHHHH
Q 037424 192 GILKPGSVNLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 192 GiiKPGeMTLVLGrPGSGcSTlLK~L 217 (231)
|=+.|| +|+|-|+||+|||||+-.+
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~ 48 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTM 48 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHH
Confidence 345678 8999999999999995444
No 246
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.61 E-value=0.044 Score=51.16 Aligned_cols=25 Identities=12% Similarity=-0.154 Sum_probs=22.7
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
||+++++.|++||||||++..|+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 8899999999999999999988754
No 247
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.58 E-value=0.025 Score=50.97 Aligned_cols=24 Identities=8% Similarity=-0.255 Sum_probs=21.4
Q ss_pred eCCeEEEEecCCCCCchhHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.|+.-+|+.||||+|||+|.++|+
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 567788999999999999999985
No 248
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.58 E-value=0.028 Score=52.35 Aligned_cols=26 Identities=0% Similarity=-0.321 Sum_probs=21.8
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++|.+=+|+-||||+|||++-|+|+=
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 45656678889999999999999874
No 249
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.57 E-value=0.036 Score=48.47 Aligned_cols=22 Identities=9% Similarity=-0.141 Sum_probs=19.4
Q ss_pred EEEEecCCCCCchhHHHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..|+-||||+||||+++.++=-
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988643
No 250
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.56 E-value=0.03 Score=48.45 Aligned_cols=20 Identities=10% Similarity=-0.142 Sum_probs=17.9
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-++|+|.||+|||||++.|+
T Consensus 101 ~v~~vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred heEEeCCCCCCHHHHHHHHh
Confidence 46788999999999999986
No 251
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.54 E-value=0.035 Score=51.31 Aligned_cols=21 Identities=0% Similarity=-0.227 Sum_probs=18.8
Q ss_pred EEEEecCCCCCchhHHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~~ 219 (231)
.++|.|+||+||||+++.+.-
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 889999999999999987654
No 252
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.44 E-value=0.038 Score=51.14 Aligned_cols=25 Identities=8% Similarity=-0.172 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
|++=.|+.||||+|||++-++|+-.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHH
Confidence 5556788999999999999998754
No 253
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.39 E-value=0.044 Score=49.08 Aligned_cols=23 Identities=4% Similarity=-0.208 Sum_probs=19.7
Q ss_pred eEEEEecCCCCCchhHHHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+.|.|+||+|||||+..|+..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999998643
No 254
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.38 E-value=0.018 Score=44.66 Aligned_cols=23 Identities=9% Similarity=-0.269 Sum_probs=18.8
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+.=+|+.|+||+|||++.+.|.
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCcEEEECCCCccHHHHHHHHH
Confidence 34447899999999999998764
No 255
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.36 E-value=0.039 Score=48.81 Aligned_cols=24 Identities=0% Similarity=-0.277 Sum_probs=20.5
Q ss_pred CCeEEEE--ecCCCCCchhHHHHHHH
Q 037424 196 PGSVNLA--DCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 196 PGeMTLV--LGrPGSGcSTlLK~L~~ 219 (231)
.+..++| -|+||+|||||++.++=
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHH
Confidence 4567888 89999999999998763
No 256
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.31 E-value=0.042 Score=47.17 Aligned_cols=24 Identities=13% Similarity=-0.020 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCCCchhHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+|.+..+.|+|||||||+.+.|.=
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 577889999999999999998864
No 257
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.28 E-value=0.036 Score=48.48 Aligned_cols=20 Identities=10% Similarity=-0.067 Sum_probs=17.8
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-++|+|.||+|||||+++|.
T Consensus 122 ~v~~vG~~nvGKSsliN~l~ 141 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLA 141 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEecCCCchHHHHHHHh
Confidence 46788999999999999985
No 258
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.26 E-value=0.04 Score=51.85 Aligned_cols=24 Identities=0% Similarity=-0.272 Sum_probs=20.7
Q ss_pred CCeEEEEecCCCCCchhHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+...+|+-||||+||||+.++|+=
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446789999999999999998864
No 259
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.15 E-value=0.042 Score=47.18 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=19.7
Q ss_pred eEEEEecCCCCCchhHHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.+++|.|++|+|||||++.++=
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4999999999999999998753
No 260
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.09 E-value=0.05 Score=50.56 Aligned_cols=24 Identities=8% Similarity=-0.160 Sum_probs=20.4
Q ss_pred CeEEEEecCCCCCchhHHHHHHHH
Q 037424 197 GSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+++++|.|||||||+.+.|+--
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999998743
No 261
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.00 E-value=0.045 Score=46.72 Aligned_cols=21 Identities=10% Similarity=-0.306 Sum_probs=18.9
Q ss_pred EEEecCCCCCchhHHHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~~~ 220 (231)
.|+-||||+||||+.+.++=-
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 789999999999999988754
No 262
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=92.95 E-value=0.053 Score=49.33 Aligned_cols=23 Identities=13% Similarity=-0.132 Sum_probs=18.5
Q ss_pred eEEEEecCCCCCchhHHHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.=++|+|+||||||++++.+..-
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~ 76 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYT 76 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999998766543
No 263
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.93 E-value=0.055 Score=49.26 Aligned_cols=23 Identities=9% Similarity=-0.295 Sum_probs=20.0
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+.+..|+||+|||||||-+.|+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA 61 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLA 61 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999998886
No 264
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.89 E-value=0.035 Score=47.55 Aligned_cols=22 Identities=0% Similarity=-0.402 Sum_probs=18.6
Q ss_pred eEEEEecCCCCCchhHHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~~ 219 (231)
..+|+-||||+|||||-.+|+=
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999888754
No 265
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.88 E-value=0.044 Score=52.01 Aligned_cols=26 Identities=8% Similarity=-0.239 Sum_probs=22.1
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++|-+=+|+-||||+|||+|-|+|+=
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 45666778999999999999999874
No 266
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=92.74 E-value=0.046 Score=52.38 Aligned_cols=20 Identities=15% Similarity=-0.006 Sum_probs=18.5
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
.++|+|+||+|||||++.|.
T Consensus 67 ~V~vvG~~n~GKSTLIN~Ll 86 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLL 86 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78899999999999999984
No 267
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.73 E-value=0.042 Score=60.26 Aligned_cols=37 Identities=11% Similarity=-0.129 Sum_probs=31.8
Q ss_pred ccccccee--EEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 185 NILNRVSG--ILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 185 ~IL~dVSG--iiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.=|+.+.| =+.||++++|-|+||+|||||+..++.-+
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34788885 69999999999999999999998887654
No 268
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=92.57 E-value=0.032 Score=49.80 Aligned_cols=20 Identities=5% Similarity=-0.252 Sum_probs=17.4
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-.+|+|+||+|||||++.|.
T Consensus 33 ~I~vvG~~~~GKSSLln~L~ 52 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFV 52 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTT
T ss_pred eEEEECCCCCCHHHHHHHHh
Confidence 46788999999999999874
No 269
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.56 E-value=0.049 Score=58.92 Aligned_cols=39 Identities=10% Similarity=-0.130 Sum_probs=30.9
Q ss_pred ccccccc-e-eEEeCCeEEEEecCCCCCchhHHHHHHHHHH
Q 037424 184 INILNRV-S-GILKPGSVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 184 ~~IL~dV-S-GiiKPGeMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
...|+++ . |=+.+|++++|.|+||+|||+|.-.+..-++
T Consensus 19 i~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~ 59 (1706)
T 3cmw_A 19 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 59 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3346665 3 5699999999999999999999888766543
No 270
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.55 E-value=0.049 Score=59.78 Aligned_cols=38 Identities=11% Similarity=-0.141 Sum_probs=32.7
Q ss_pred ccccccce--eEEeCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 184 INILNRVS--GILKPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 184 ~~IL~dVS--GiiKPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
...|+++. |-+.+|+.+||.|+||+|||||...+..-+
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea 1105 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1105 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 55688998 579999999999999999999988776544
No 271
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.45 E-value=0.059 Score=50.91 Aligned_cols=25 Identities=12% Similarity=-0.149 Sum_probs=21.6
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
++|..-+|+.||||+|||++.++|+
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia 259 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVA 259 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHH
Confidence 4566678999999999999999985
No 272
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.44 E-value=0.07 Score=51.32 Aligned_cols=23 Identities=0% Similarity=-0.336 Sum_probs=20.0
Q ss_pred CeEEEEecCCCCCchhHHHHHHH
Q 037424 197 GSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+..++|.|+||+||||+++.|.-
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46889999999999999988753
No 273
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=92.44 E-value=0.053 Score=50.91 Aligned_cols=19 Identities=0% Similarity=-0.260 Sum_probs=17.5
Q ss_pred EEEecCCCCCchhHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~ 218 (231)
+.|+|+||+|||||++.|.
T Consensus 227 V~ivG~~nvGKSSLln~L~ 245 (462)
T 3geh_A 227 VAIVGRPNVGKSSLLNAWS 245 (462)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 7899999999999999875
No 274
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=92.43 E-value=0.055 Score=49.01 Aligned_cols=24 Identities=8% Similarity=-0.126 Sum_probs=20.0
Q ss_pred CeEEEEecCCCCCchhHHHHHHHH
Q 037424 197 GSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+.-.+++|+||+|||||+++|+=.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhh
Confidence 345678899999999999998753
No 275
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=92.38 E-value=0.057 Score=46.27 Aligned_cols=25 Identities=4% Similarity=-0.324 Sum_probs=19.7
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+..--++|+|.||+|||||++.+.
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~ 176 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYT 176 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHH
T ss_pred ccceeEEEEECCCCCChHHHHHHHH
Confidence 3344457899999999999998764
No 276
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.35 E-value=0.06 Score=45.76 Aligned_cols=21 Identities=10% Similarity=-0.373 Sum_probs=18.7
Q ss_pred EEEecCCCCCchhHHHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~~~ 220 (231)
.|+-||||+||||+.+.++=-
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHH
Confidence 789999999999999988654
No 277
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.28 E-value=0.059 Score=50.65 Aligned_cols=25 Identities=20% Similarity=0.033 Sum_probs=20.0
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.|+- .|+.||||+||||+.++|+=.
T Consensus 49 ~~~~-iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 49 TPKN-ILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp CCCC-EEEECCTTSSHHHHHHHHHHH
T ss_pred CCce-EEEEcCCCCCHHHHHHHHHHH
Confidence 3443 567899999999999998754
No 278
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=92.22 E-value=0.053 Score=49.17 Aligned_cols=24 Identities=8% Similarity=-0.104 Sum_probs=20.3
Q ss_pred CCeEEEEecCCCCCchhHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++.-.+++|+||+|||||+++|+=
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~ 182 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIK 182 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHh
Confidence 345678889999999999999874
No 279
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.17 E-value=0.066 Score=53.88 Aligned_cols=25 Identities=12% Similarity=-0.149 Sum_probs=22.1
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
++|-+=+|+-||||+|||+|.|+|+
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHH
Confidence 5677778899999999999999986
No 280
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.14 E-value=0.068 Score=50.30 Aligned_cols=26 Identities=8% Similarity=-0.175 Sum_probs=22.2
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++|.+=.|+-||||.|||+|-|+|+-
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHH
Confidence 46667788889999999999999874
No 281
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=91.97 E-value=0.08 Score=53.52 Aligned_cols=33 Identities=9% Similarity=0.004 Sum_probs=29.2
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHH-HHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVF-QVLF 218 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlL-K~L~ 218 (231)
=|+||+-.|.-+.+|.|-|.+|||||||. .+||
T Consensus 25 NLkni~v~iP~~~l~viTGvSGSGKSSLafdtl~ 58 (842)
T 2vf7_A 25 NLKDISVKVPRDALVVFTGVSGSGKSSLAFGTLY 58 (842)
T ss_dssp TCCSEEEEEESSSEEEEESSTTSSHHHHHTTTHH
T ss_pred CCCCeeEEecCCCEEEEECCCCCCHHHHHHHHHH
Confidence 48999999999999999999999999985 3443
No 282
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.97 E-value=0.076 Score=45.16 Aligned_cols=21 Identities=5% Similarity=-0.111 Sum_probs=18.9
Q ss_pred EEEecCCCCCchhHHHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~~~ 220 (231)
.|+.||||+||||+.+.++=-
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 789999999999999988754
No 283
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.93 E-value=0.078 Score=49.38 Aligned_cols=22 Identities=5% Similarity=-0.304 Sum_probs=19.0
Q ss_pred EEEEecCCCCCchhHHHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~~~ 220 (231)
=.|+.||||+|||++.+.|+-.
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 3478899999999999998764
No 284
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.83 E-value=0.089 Score=48.98 Aligned_cols=25 Identities=12% Similarity=-0.144 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCCchhHHHHHHHHH
Q 037424 197 GSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
...+++.|+||+||||+...|+..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999887643
No 285
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=91.73 E-value=0.056 Score=48.75 Aligned_cols=18 Identities=6% Similarity=-0.118 Sum_probs=16.3
Q ss_pred EEEecCCCCCchhHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L 217 (231)
++|+|.|++|||||++.|
T Consensus 161 V~lvG~~nvGKSTLln~L 178 (342)
T 1lnz_A 161 VGLVGFPSVGKSTLLSVV 178 (342)
T ss_dssp EEEESSTTSSHHHHHHHS
T ss_pred eeeeCCCCCCHHHHHHHH
Confidence 568999999999999986
No 286
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.67 E-value=0.082 Score=45.75 Aligned_cols=21 Identities=14% Similarity=-0.080 Sum_probs=18.1
Q ss_pred eEEEEecCCCCCchhHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+.|+-||||+||||+.++|+
T Consensus 49 ~~~L~~G~~G~GKT~la~~la 69 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALC 69 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHH
Confidence 467788889999999999985
No 287
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.66 E-value=0.095 Score=50.89 Aligned_cols=26 Identities=15% Similarity=-0.009 Sum_probs=22.5
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLFLLVLW 223 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~~~~~~ 223 (231)
-=+||.|.+|||||++|++|.+-++.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 35799999999999999999887664
No 288
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=91.66 E-value=0.059 Score=47.80 Aligned_cols=19 Identities=16% Similarity=-0.059 Sum_probs=16.8
Q ss_pred EEEEecCCCCCchhHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L 217 (231)
-++|+|+||+|||||++.|
T Consensus 167 kI~ivG~~~vGKSsLl~~l 185 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKL 185 (329)
T ss_dssp EEEEEESTTSSHHHHHHHT
T ss_pred eEEEECCCCccHHHHHHHH
Confidence 3688999999999999876
No 289
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.62 E-value=0.058 Score=51.26 Aligned_cols=23 Identities=9% Similarity=-0.152 Sum_probs=19.6
Q ss_pred CeEEEEecCCCCCchhHHHHHHH
Q 037424 197 GSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
|.=+|+.||||.|||+|.++|+-
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGG
T ss_pred CCeeEeecCchHHHHHHHHHHHH
Confidence 34578899999999999999864
No 290
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=91.50 E-value=0.062 Score=52.28 Aligned_cols=30 Identities=20% Similarity=0.048 Sum_probs=22.6
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+|.++.+ |--.+.|+|+|++|||||++.|+
T Consensus 30 ~L~~i~~---~~~~VaivG~pnvGKStLiN~L~ 59 (592)
T 1f5n_A 30 ILSAITQ---PMVVVAIVGLYRTGKSYLMNKLA 59 (592)
T ss_dssp HHHTCCS---BEEEEEEEEBTTSSHHHHHHHHT
T ss_pred HHHhccC---CCcEEEEECCCCCCHHHHHHhHc
Confidence 4555432 33467899999999999999985
No 291
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.50 E-value=0.12 Score=48.45 Aligned_cols=24 Identities=8% Similarity=-0.168 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCCCchhHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++..+++.|+||+||||+...|+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 567999999999999999988874
No 292
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=91.48 E-value=0.094 Score=47.51 Aligned_cols=21 Identities=5% Similarity=-0.232 Sum_probs=18.1
Q ss_pred EEEEecCCCCCchhHHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~~ 219 (231)
-+||||..+|||||++|-+=|
T Consensus 34 klLlLG~geSGKST~~KQmki 54 (353)
T 1cip_A 34 KLLLLGAGESGKSTIVKQMKI 54 (353)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEcCCCCCchhHHHHHHH
Confidence 468999999999999987654
No 293
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.45 E-value=0.1 Score=49.56 Aligned_cols=25 Identities=12% Similarity=-0.126 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
...++++.|.|||||||+-+.|+=-
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999998643
No 294
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=91.36 E-value=0.097 Score=51.46 Aligned_cols=24 Identities=8% Similarity=-0.266 Sum_probs=20.3
Q ss_pred eCCeEEEEecCCCCCchhHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+++=.++|+|+||+|||||+++|.
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLl 90 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALI 90 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 344467899999999999999986
No 295
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.33 E-value=0.12 Score=49.93 Aligned_cols=19 Identities=0% Similarity=-0.228 Sum_probs=16.0
Q ss_pred eEEEEecCCCCCchhHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQV 216 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~ 216 (231)
..+||.||||+|||+.+-.
T Consensus 206 ~~~lI~GPPGTGKT~ti~~ 224 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVE 224 (646)
T ss_dssp SEEEEECCTTSCHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 4889999999999987543
No 296
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=91.22 E-value=0.066 Score=50.43 Aligned_cols=19 Identities=5% Similarity=-0.010 Sum_probs=17.4
Q ss_pred EEEecCCCCCchhHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~ 218 (231)
+.|+|+||+|||||++.|.
T Consensus 236 V~ivG~~nvGKSSLln~L~ 254 (476)
T 3gee_A 236 TVIAGKPNAGKSTLLNTLL 254 (476)
T ss_dssp EEEECCTTSSHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999874
No 297
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.11 E-value=0.071 Score=47.88 Aligned_cols=23 Identities=0% Similarity=-0.088 Sum_probs=19.1
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
++.-++|-||||.|||++.|.++
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~ 66 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVM 66 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34456888999999999999876
No 298
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=91.00 E-value=0.096 Score=49.32 Aligned_cols=19 Identities=5% Similarity=-0.169 Sum_probs=16.9
Q ss_pred EEEecCCCCCchhHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~ 218 (231)
++|+|.||+|||||++.|.
T Consensus 44 V~lvG~~~vGKSSLl~~l~ 62 (535)
T 3dpu_A 44 VHLIGDGMAGKTSLLKQLI 62 (535)
T ss_dssp EEEESSSCSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4688999999999999875
No 299
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.89 E-value=0.14 Score=49.43 Aligned_cols=21 Identities=5% Similarity=-0.153 Sum_probs=18.1
Q ss_pred eEEEEecCCCCCchhHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~ 218 (231)
..++|.||||+||||++..+.
T Consensus 196 ~~~li~GppGTGKT~~~~~~i 216 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIV 216 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHH
Confidence 478999999999999887654
No 300
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.85 E-value=0.1 Score=47.89 Aligned_cols=20 Identities=0% Similarity=-0.207 Sum_probs=17.5
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-..|+|+||+|||||++.|.
T Consensus 177 ki~lvG~~nvGKSSLin~l~ 196 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAML 196 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHh
Confidence 46788999999999999874
No 301
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=90.71 E-value=0.11 Score=48.17 Aligned_cols=20 Identities=15% Similarity=-0.129 Sum_probs=17.7
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-++|+|+||+|||||++.|.
T Consensus 324 ki~lvG~~nvGKSsLl~~l~ 343 (497)
T 3lvq_E 324 RILMLGLDAAGKTTILYKLK 343 (497)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHh
Confidence 46789999999999999874
No 302
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.71 E-value=0.12 Score=49.26 Aligned_cols=24 Identities=13% Similarity=-0.160 Sum_probs=19.4
Q ss_pred CCeEEEEecCCCCCchhHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+...+++.|+||+||||+...|+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445778889999999999999874
No 303
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.34 E-value=0.15 Score=50.05 Aligned_cols=23 Identities=17% Similarity=-0.093 Sum_probs=20.2
Q ss_pred CeEEEEecCCCCCchhHHHHHHH
Q 037424 197 GSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
|.+..|.|.|||||||+.+.|.=
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHH
Confidence 56788999999999999999864
No 304
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=90.34 E-value=0.05 Score=51.37 Aligned_cols=20 Identities=5% Similarity=-0.114 Sum_probs=17.9
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-+.|+|+|++||||||+.|.
T Consensus 245 kV~ivG~pnvGKSSLln~L~ 264 (482)
T 1xzp_A 245 RMVIVGKPNVGKSTLLNRLL 264 (482)
T ss_dssp EEEEECCHHHHTCHHHHHHH
T ss_pred EEEEECcCCCcHHHHHHHHH
Confidence 47799999999999999875
No 305
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=90.29 E-value=0.14 Score=52.69 Aligned_cols=28 Identities=14% Similarity=-0.073 Sum_probs=26.9
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDV 213 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTl 213 (231)
=|+||+=.|.-+++|.+-|.+|||||||
T Consensus 35 NLkni~v~iP~~~lvv~tG~SGSGKSSL 62 (993)
T 2ygr_A 35 NLRSVDLDLPRDALIVFTGLSGSGKSSL 62 (993)
T ss_dssp SCCSEEEEEESSSEEEEEESTTSSHHHH
T ss_pred ccCceeeeccCCCEEEEECCCCCcHHHH
Confidence 3899999999999999999999999998
No 306
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=90.24 E-value=0.082 Score=48.55 Aligned_cols=19 Identities=5% Similarity=-0.220 Sum_probs=16.8
Q ss_pred EEEecCCCCCchhHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~ 218 (231)
+.++|+|.+||||||++|.
T Consensus 75 V~ivG~PNvGKSTL~n~Lt 93 (376)
T 4a9a_A 75 VGFVGFPSVGKSTLLSKLT 93 (376)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4577999999999999985
No 307
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=90.18 E-value=0.14 Score=52.51 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=26.8
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDV 213 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTl 213 (231)
=|+||+=.|.-+++|.+-|.+|||||||
T Consensus 33 NLkni~v~iP~~~lvv~tG~SGSGKSSL 60 (972)
T 2r6f_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSL 60 (972)
T ss_dssp SCCSEEEEEETTSEEEEEESTTSSHHHH
T ss_pred cCCceeeeccCCcEEEEECCCCCCHHHH
Confidence 3899999999999999999999999998
No 308
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=89.84 E-value=0.23 Score=44.63 Aligned_cols=33 Identities=15% Similarity=-0.087 Sum_probs=26.3
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L 217 (231)
...+|++. +.-.|+-+|+.|++|+||||+...|
T Consensus 132 ~~~~H~~~-v~~~g~~vl~~G~sG~GKSt~a~~l 164 (314)
T 1ko7_A 132 TTSLHGVL-VDVYGVGVLITGDSGIGKSETALEL 164 (314)
T ss_dssp EEEEESEE-EEETTEEEEEEESTTSSHHHHHHHH
T ss_pred ceeeeEEE-EEECCEEEEEEeCCCCCHHHHHHHH
Confidence 44677754 4458999999999999999987665
No 309
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.83 E-value=0.15 Score=44.90 Aligned_cols=21 Identities=0% Similarity=-0.255 Sum_probs=18.3
Q ss_pred EEEEecCCCCCchhHHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~~ 219 (231)
-+++-||||+|||+|.++|+-
T Consensus 106 ~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 467889999999999998874
No 310
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.55 E-value=0.17 Score=49.46 Aligned_cols=26 Identities=8% Similarity=-0.170 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
++.-.||.|+||+||||+.+.|+-.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 44556899999999999999988643
No 311
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=89.50 E-value=0.18 Score=48.65 Aligned_cols=26 Identities=8% Similarity=-0.079 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.|.+..+-|.|||||||+.|.|.=-.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 45578889999999999999987543
No 312
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.49 E-value=0.2 Score=48.22 Aligned_cols=24 Identities=4% Similarity=-0.118 Sum_probs=20.3
Q ss_pred CCeEEEEecCCCCCchhHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
.++.++|-|+||+||||+++.+.-
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHH
Confidence 367899999999999999987643
No 313
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.37 E-value=0.13 Score=51.43 Aligned_cols=23 Identities=4% Similarity=-0.220 Sum_probs=19.6
Q ss_pred EEEEecCCCCCchhHHHHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
-.+|.||||+||||+++.|+--.
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH
Confidence 46888999999999999988643
No 314
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=88.98 E-value=0.13 Score=51.16 Aligned_cols=26 Identities=8% Similarity=-0.129 Sum_probs=21.1
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++.|+.++|.||+||||||++..+.+
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34578899999999999998777633
No 315
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=88.97 E-value=0.23 Score=49.72 Aligned_cols=22 Identities=5% Similarity=-0.161 Sum_probs=18.5
Q ss_pred CeEEEEecCCCCCchhHHHHHH
Q 037424 197 GSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+..++|.||||+|||+++..+.
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i 396 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIV 396 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999887654
No 316
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.93 E-value=0.2 Score=49.18 Aligned_cols=22 Identities=5% Similarity=-0.304 Sum_probs=19.2
Q ss_pred EEEEecCCCCCchhHHHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~~~ 220 (231)
=.|+.||||+||||+.+.|+-.
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 3688999999999999998754
No 317
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=88.91 E-value=0.18 Score=47.37 Aligned_cols=25 Identities=0% Similarity=-0.283 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
|--.+.|+|+|.+||||||+.|+-.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3446789999999999999999853
No 318
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=88.91 E-value=0.23 Score=46.49 Aligned_cols=23 Identities=0% Similarity=-0.347 Sum_probs=20.3
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+++++|.|++|.|||||.+.++
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHH
Confidence 46799999999999999998764
No 319
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=88.90 E-value=0.21 Score=47.73 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=21.2
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.|....+.|.|||||||+-+.|.=
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~ 394 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILAT 394 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHH
Confidence 3466788899999999999999864
No 320
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=88.51 E-value=0.27 Score=49.26 Aligned_cols=22 Identities=5% Similarity=-0.161 Sum_probs=18.7
Q ss_pred CeEEEEecCCCCCchhHHHHHH
Q 037424 197 GSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+..++|.||||+||||++..+.
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i 392 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIV 392 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 4588999999999999887664
No 321
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.40 E-value=0.24 Score=48.36 Aligned_cols=25 Identities=20% Similarity=-0.100 Sum_probs=20.3
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
|.--+|+.||||+|||++.++|+=.
T Consensus 487 p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 487 PVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHHHH
Confidence 3335788999999999999988753
No 322
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.38 E-value=0.11 Score=50.10 Aligned_cols=24 Identities=8% Similarity=-0.200 Sum_probs=19.3
Q ss_pred eCCeEEEEecCCCCCchhHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
++.-=+|+.||||.|||+|+|.|+
T Consensus 325 r~~~~vLL~GppGtGKT~LAr~la 348 (595)
T 3f9v_A 325 RGDIHILIIGDPGTAKSQMLQFIS 348 (595)
T ss_dssp CCSCCEEEEESSCCTHHHHHHSSS
T ss_pred CCCcceEEECCCchHHHHHHHHHH
Confidence 333357889999999999999875
No 323
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=88.13 E-value=0.24 Score=45.89 Aligned_cols=22 Identities=9% Similarity=-0.164 Sum_probs=18.6
Q ss_pred EEEEecCCCCCchhHHHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~~~ 220 (231)
-+||||..+|||||++|-+=|+
T Consensus 42 klLLLG~geSGKSTi~KQmkii 63 (402)
T 1azs_C 42 RLLLLGAGESGKSTIVKQMRIL 63 (402)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEecCCCCchhhHHHHHHHH
Confidence 4789999999999999977543
No 324
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.28 E-value=0.29 Score=48.82 Aligned_cols=24 Identities=13% Similarity=-0.133 Sum_probs=20.5
Q ss_pred eEEEEecCCCCCchhHHHHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
.-.|+.||||+|||++.|+|+-..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999987543
No 325
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=87.15 E-value=0.36 Score=45.79 Aligned_cols=35 Identities=11% Similarity=-0.083 Sum_probs=27.8
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
.+++.+.-++|-+ -+++.|+||.|||||++.|+.-
T Consensus 140 r~ID~L~pi~kGq-~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 140 KVVDLLAPYIKGG-KIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHHHSCEETTC-EEEEECCSSSCHHHHHHHHHHH
T ss_pred hHHHHHhhhccCC-EEEEECCCCCCccHHHHHHHhh
Confidence 4577777777655 5678899999999999988754
No 326
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.78 E-value=0.35 Score=47.42 Aligned_cols=23 Identities=9% Similarity=-0.177 Sum_probs=19.9
Q ss_pred EEEEecCCCCCchhHHHHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
-.|+.||||+|||++.|+|+=..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987544
No 327
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=86.70 E-value=0.33 Score=41.38 Aligned_cols=26 Identities=8% Similarity=-0.082 Sum_probs=21.4
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
-++|.+.++-|+.||||||.|--++.
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~ 50 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVR 50 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHH
Confidence 36789999999999999998765544
No 328
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=86.44 E-value=0.4 Score=41.12 Aligned_cols=29 Identities=10% Similarity=0.073 Sum_probs=20.2
Q ss_pred ceeEEeCCeEEEEecCCCCCchh-HHHHHH
Q 037424 190 VSGILKPGSVNLADCLTFLHPLD-VFQVLF 218 (231)
Q Consensus 190 VSGiiKPGeMTLVLGrPGSGcST-lLK~L~ 218 (231)
+.+.-..|.+.++-|+.|||||| ||+.+.
T Consensus 21 m~~~~~~G~I~vitG~M~sGKTT~Llr~~~ 50 (219)
T 3e2i_A 21 MYETYHSGWIECITGSMFSGKSEELIRRLR 50 (219)
T ss_dssp ------CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred EeeccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 33444678999999999999999 777753
No 329
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=85.93 E-value=0.31 Score=54.91 Aligned_cols=20 Identities=0% Similarity=-0.233 Sum_probs=18.0
Q ss_pred EEEecCCCCCchhHHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~~ 219 (231)
++|+|||||||||+.|+|+=
T Consensus 926 vmlvGptgsGKTt~~~~La~ 945 (2695)
T 4akg_A 926 LILVGKAGCGKTATWKTVID 945 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999874
No 330
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=85.24 E-value=0.44 Score=45.45 Aligned_cols=27 Identities=11% Similarity=-0.059 Sum_probs=22.8
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
+.|....+.|.|||||||+=+.|+=-.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHH
Confidence 566778899999999999999987543
No 331
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=84.78 E-value=0.42 Score=44.02 Aligned_cols=22 Identities=0% Similarity=-0.265 Sum_probs=18.5
Q ss_pred CeEEEEecCCCCCchhHHHHHH
Q 037424 197 GSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..-..|+|.||+|||||++.|.
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~ 216 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAML 216 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred cceeEEecCCCCCHHHHHHHHh
Confidence 3456789999999999999874
No 332
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=84.67 E-value=0.42 Score=46.25 Aligned_cols=24 Identities=8% Similarity=-0.157 Sum_probs=19.1
Q ss_pred eCCeEEEEecCCCCCchhHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+|.=-..|+|.|++|||||++.|.
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll 188 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLL 188 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHHHHH
Confidence 333346788999999999999874
No 333
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=84.16 E-value=0.76 Score=41.23 Aligned_cols=31 Identities=6% Similarity=-0.217 Sum_probs=25.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQV 216 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~ 216 (231)
..+|. +.+..-|.=+|+.|+||+||||+--.
T Consensus 136 ~~~H~-~~v~~~g~gvli~G~sG~GKStlal~ 166 (312)
T 1knx_A 136 AQIHG-VLLEVFGVGVLLTGRSGIGKSECALD 166 (312)
T ss_dssp EEEEE-EEEEETTEEEEEEESSSSSHHHHHHH
T ss_pred ceeEE-EEEEECCEEEEEEcCCCCCHHHHHHH
Confidence 45666 67778899999999999999998643
No 334
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=83.77 E-value=0.37 Score=48.53 Aligned_cols=26 Identities=8% Similarity=-0.192 Sum_probs=21.4
Q ss_pred EeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++|.+=+|+-||||+|||.+-|+|+-
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAkaiA~ 533 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHHHHH
T ss_pred CCCCceEEEecCCCCCchHHHHHHHH
Confidence 45555678899999999999999873
No 335
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=83.48 E-value=0.39 Score=44.72 Aligned_cols=20 Identities=5% Similarity=-0.222 Sum_probs=17.3
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-..|+|.|++|||||++.|.
T Consensus 35 ki~iiG~~~~GKSTLi~~Ll 54 (483)
T 3p26_A 35 SFVVLGHVDAGKSTLMGRLL 54 (483)
T ss_dssp EEEEESCGGGTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35688999999999999874
No 336
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=81.68 E-value=0.98 Score=41.92 Aligned_cols=25 Identities=20% Similarity=-0.021 Sum_probs=20.1
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
++.+..++.|++|+||||+.--|+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3556777889999999999877764
No 337
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=81.00 E-value=0.64 Score=53.22 Aligned_cols=19 Identities=5% Similarity=-0.165 Sum_probs=16.9
Q ss_pred EEecCCCCCchhHHHHHHH
Q 037424 201 LADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 201 LVLGrPGSGcSTlLK~L~~ 219 (231)
.|+|||||||||..|+|+=
T Consensus 910 mlVGp~gsGKTt~~~~L~~ 928 (3245)
T 3vkg_A 910 MMVGPSGGGKTTSWEVYLE 928 (3245)
T ss_dssp EEECSSSSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3889999999999999874
No 338
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=79.73 E-value=0.34 Score=44.94 Aligned_cols=20 Identities=5% Similarity=-0.081 Sum_probs=17.0
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-.+|+|++|+|||||++.|.
T Consensus 36 kI~IvG~~~vGKSTLin~L~ 55 (423)
T 3qq5_A 36 YIVVAGRRNVGKSSFMNALV 55 (423)
T ss_dssp EEEEECSCSTTTTTTTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46789999999999998763
No 339
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=78.69 E-value=0.99 Score=45.25 Aligned_cols=20 Identities=5% Similarity=-0.252 Sum_probs=17.7
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
...|+|.++|||||||++|.
T Consensus 53 ~I~vvG~~saGKSSllnaL~ 72 (772)
T 3zvr_A 53 QIAVVGGQSAGKSSVLENFV 72 (772)
T ss_dssp EEEEEECTTTCHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 45788999999999999984
No 340
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=78.43 E-value=1 Score=43.41 Aligned_cols=20 Identities=0% Similarity=-0.208 Sum_probs=17.7
Q ss_pred EEEEecCCCCCchhHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~ 218 (231)
-..|+|.|++|||||+..|.
T Consensus 179 ~I~iiG~~d~GKSTLi~~Ll 198 (592)
T 3mca_A 179 HLVVTGHVDSGKSTMLGRIM 198 (592)
T ss_dssp EEEEECCSSSTHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999884
No 341
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=75.32 E-value=1.5 Score=41.05 Aligned_cols=36 Identities=8% Similarity=0.005 Sum_probs=26.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
..+++-+.=+.| |.-.++.|+||.|||+|++.|+=-
T Consensus 163 iraID~l~Pigr-GQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 163 TRLIDLFAPIGK-GQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHSCCBT-TCEEEEEECTTCCHHHHHHHHHHH
T ss_pred chhhhhcccccC-CceEEEecCCCCChhHHHHHHHHH
Confidence 335555555554 666788899999999999887643
No 342
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=72.88 E-value=2.1 Score=40.23 Aligned_cols=22 Identities=0% Similarity=-0.325 Sum_probs=19.2
Q ss_pred CeEEEEecCCCCCchhHHHHHH
Q 037424 197 GSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+++.|.|.+|.|||||-+.++
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~ 173 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQAL 173 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 4788999999999999988665
No 343
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=72.82 E-value=1.2 Score=41.47 Aligned_cols=23 Identities=0% Similarity=-0.398 Sum_probs=19.1
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+---..++|.+++|||||++.|.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll 64 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNIL 64 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHH
T ss_pred CeeEEEEEECCCCCHHHHHHHHH
Confidence 33457899999999999999874
No 344
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=72.44 E-value=1.2 Score=50.30 Aligned_cols=25 Identities=4% Similarity=-0.221 Sum_probs=20.8
Q ss_pred EEeCCeEEEEecCCCCCchhHHHHH
Q 037424 193 ILKPGSVNLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 193 iiKPGeMTLVLGrPGSGcSTlLK~L 217 (231)
.+++|+=+|+.||||+|||++.+.+
T Consensus 1263 ~l~~~~~vLL~GPpGtGKT~la~~~ 1287 (2695)
T 4akg_A 1263 LLNSKRGIILCGPPGSGKTMIMNNA 1287 (2695)
T ss_dssp HHHHTCEEEEECSTTSSHHHHHHHH
T ss_pred HHHCCCeEEEECCCCCCHHHHHHHH
Confidence 3567788899999999999999554
No 345
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=68.48 E-value=3.1 Score=40.79 Aligned_cols=17 Identities=6% Similarity=-0.236 Sum_probs=15.6
Q ss_pred CCeEEEEecCCCCCchh
Q 037424 196 PGSVNLADCLTFLHPLD 212 (231)
Q Consensus 196 PGeMTLVLGrPGSGcST 212 (231)
.|+.+++.||+|||||+
T Consensus 154 ~rk~vlv~apTGSGKT~ 170 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTY 170 (677)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCCEEEEEcCCCCCHHH
Confidence 57889999999999998
No 346
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=68.41 E-value=2.7 Score=39.65 Aligned_cols=26 Identities=0% Similarity=-0.252 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
|=-++-|+|++++|||+||+.|+-++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~ 91 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYM 91 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHh
Confidence 33467799999999999999987554
No 347
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=68.29 E-value=2 Score=36.11 Aligned_cols=16 Identities=0% Similarity=-0.236 Sum_probs=14.1
Q ss_pred ecCCCCCchhHHHHHH
Q 037424 203 DCLTFLHPLDVFQVLF 218 (231)
Q Consensus 203 LGrPGSGcSTlLK~L~ 218 (231)
=|.+|+|||||++.+.
T Consensus 34 ~~~~~vGKSsLi~~l~ 49 (255)
T 3c5h_A 34 KGQCGIGKSCLCNRFV 49 (255)
T ss_dssp TTTCCCSHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHH
Confidence 4889999999999875
No 348
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=67.37 E-value=2.1 Score=41.05 Aligned_cols=20 Identities=20% Similarity=0.031 Sum_probs=18.0
Q ss_pred eCCeEEEEecCCCCCchhHH
Q 037424 195 KPGSVNLADCLTFLHPLDVF 214 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlL 214 (231)
+.|..+++.|.+|+|||||.
T Consensus 211 ~~g~~~~ffGlSGtGKTTLs 230 (524)
T 1ii2_A 211 KQGDVTVFFGLSGTGKTTLS 230 (524)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEEccCCcchhhhh
Confidence 57789999999999999974
No 349
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=67.32 E-value=2.1 Score=41.25 Aligned_cols=20 Identities=15% Similarity=-0.022 Sum_probs=17.8
Q ss_pred eCCeEEEEecCCCCCchhHH
Q 037424 195 KPGSVNLADCLTFLHPLDVF 214 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlL 214 (231)
+.|..+++.|++|+|||||.
T Consensus 239 ~~g~~~lffGlSGtGKTTLs 258 (540)
T 2olr_A 239 EKGDVAVFFGLSGTGKTTLS 258 (540)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCHHHHh
Confidence 46789999999999999974
No 350
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=67.29 E-value=2.6 Score=44.19 Aligned_cols=23 Identities=17% Similarity=-0.113 Sum_probs=20.6
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.+++.|.|++|.|||||.+.++
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy 171 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVC 171 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCccHHHHHHHHH
Confidence 46799999999999999999776
No 351
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=65.45 E-value=2.7 Score=38.56 Aligned_cols=23 Identities=13% Similarity=-0.151 Sum_probs=19.1
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+|...-|=|+-||||||++|.|.
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~La 70 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLV 70 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34456778999999999999885
No 352
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=64.93 E-value=4.4 Score=31.90 Aligned_cols=15 Identities=13% Similarity=-0.250 Sum_probs=12.7
Q ss_pred eEEEEecCCCCCchh
Q 037424 198 SVNLADCLTFLHPLD 212 (231)
Q Consensus 198 eMTLVLGrPGSGcST 212 (231)
+=++|.+|+|||||.
T Consensus 41 ~~~lv~apTGsGKT~ 55 (206)
T 1vec_A 41 RDILARAKNGTGKSG 55 (206)
T ss_dssp CCEEEECCSSSTTHH
T ss_pred CCEEEECCCCCchHH
Confidence 457899999999994
No 353
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=63.89 E-value=2.6 Score=40.45 Aligned_cols=20 Identities=20% Similarity=0.012 Sum_probs=17.5
Q ss_pred eCCeEEEEecCCCCCchhHH
Q 037424 195 KPGSVNLADCLTFLHPLDVF 214 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlL 214 (231)
+.|+.+++.|++|+|||||-
T Consensus 223 ~~g~~~~ffGlSGtGKTtLs 242 (529)
T 1j3b_A 223 KEGDVAVFFGLSGTGKTTLS 242 (529)
T ss_dssp TTCCEEEEEECTTSCHHHHT
T ss_pred CCCcEEEEEccccCChhhHh
Confidence 46789999999999999963
No 354
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=63.60 E-value=3.5 Score=39.65 Aligned_cols=20 Identities=10% Similarity=-0.109 Sum_probs=17.7
Q ss_pred eCC-eEEEEecCCCCCchhHH
Q 037424 195 KPG-SVNLADCLTFLHPLDVF 214 (231)
Q Consensus 195 KPG-eMTLVLGrPGSGcSTlL 214 (231)
+.| +.+++.|.+|+|||||.
T Consensus 232 ~~g~~~~~ffGlSGtGKTTLs 252 (532)
T 1ytm_A 232 LEGKNTAIFFGLSGTGKTTLS 252 (532)
T ss_dssp TTSCSEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEEEecCCCCHHHHh
Confidence 466 89999999999999975
No 355
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=60.79 E-value=2.6 Score=33.19 Aligned_cols=19 Identities=11% Similarity=-0.344 Sum_probs=15.0
Q ss_pred eEEEEecCCCCCchhHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQV 216 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~ 216 (231)
+-++|.+|+|+|||...-.
T Consensus 49 ~~~li~~~tGsGKT~~~~~ 67 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVY 67 (216)
T ss_dssp CCEEEECSCHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHH
Confidence 4578899999999986533
No 356
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=60.44 E-value=6.8 Score=33.34 Aligned_cols=26 Identities=8% Similarity=-0.281 Sum_probs=19.4
Q ss_pred eCCeEEEEecCCCCCchhHHHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
++++...|.|+.|.||||+--.|+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH
Confidence 35666777799999999987666643
No 357
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=60.37 E-value=4.6 Score=33.56 Aligned_cols=16 Identities=13% Similarity=-0.334 Sum_probs=13.4
Q ss_pred EEEecCCCCCchhHHH
Q 037424 200 NLADCLTFLHPLDVFQ 215 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK 215 (231)
.+|.|++|+|||.+.-
T Consensus 111 ~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp EEEEESSSTTHHHHHH
T ss_pred EEEEeCCCCCHHHHHH
Confidence 6788999999998743
No 358
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=59.90 E-value=4.1 Score=32.06 Aligned_cols=17 Identities=12% Similarity=-0.152 Sum_probs=13.7
Q ss_pred CeEEEEecCCCCCchhH
Q 037424 197 GSVNLADCLTFLHPLDV 213 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTl 213 (231)
|+-+++.+|+|||||..
T Consensus 38 ~~~~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLA 54 (207)
T ss_dssp TCCEEEECCTTSCHHHH
T ss_pred CCCEEEECCCCChHHHH
Confidence 35578899999999864
No 359
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=58.02 E-value=4.5 Score=40.38 Aligned_cols=23 Identities=0% Similarity=-0.393 Sum_probs=19.2
Q ss_pred CCeEEEEecCCCCCchhHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+++.|.|++|.|||||.+-++
T Consensus 146 ~~~~v~i~G~gG~GKTtLa~~~~ 168 (1249)
T 3sfz_A 146 EPGWVTIYGMAGCGKSVLAAEAV 168 (1249)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHh
Confidence 44788999999999999987553
No 360
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=57.48 E-value=5 Score=42.42 Aligned_cols=21 Identities=0% Similarity=-0.421 Sum_probs=18.4
Q ss_pred EEEEecCCCCCchhHHHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L~~ 219 (231)
-..++|.+++|||||++.|.-
T Consensus 298 nIvIIGhvDvGKSTLInrLt~ 318 (1289)
T 3avx_A 298 NVGTIGHVDHGKTTLTAAITT 318 (1289)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHh
Confidence 467999999999999999853
No 361
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=54.42 E-value=6.5 Score=37.29 Aligned_cols=35 Identities=11% Similarity=-0.083 Sum_probs=25.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+++-+.=+.|=++ .++.|+||.|||+|+..|+.
T Consensus 141 ir~ID~l~pigkGQr-~~Ifgg~G~GKT~L~~~i~~ 175 (482)
T 2ck3_D 141 IKVVDLLAPYAKGGK-IGLFGGAGVGKTVLIMELIN 175 (482)
T ss_dssp CHHHHHHSCEETTCE-EEEEECTTSSHHHHHHHHHH
T ss_pred eEEEecccccccCCe-eeeecCCCCChHHHHHHHHH
Confidence 345666666665554 56779999999999988765
No 362
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=54.03 E-value=9.4 Score=30.85 Aligned_cols=17 Identities=18% Similarity=-0.150 Sum_probs=13.7
Q ss_pred CeEEEEecCCCCCchhH
Q 037424 197 GSVNLADCLTFLHPLDV 213 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTl 213 (231)
|+=+++.+|+|||||..
T Consensus 62 ~~~~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLA 78 (236)
T ss_dssp TCCEEEECCTTSCHHHH
T ss_pred CCCEEEEeCCCCcHHHH
Confidence 34578899999999974
No 363
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=52.23 E-value=7.5 Score=37.32 Aligned_cols=18 Identities=17% Similarity=-0.149 Sum_probs=16.0
Q ss_pred CeEEEEecCCCCCchhHH
Q 037424 197 GSVNLADCLTFLHPLDVF 214 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlL 214 (231)
|+-++|.||+|||||+..
T Consensus 46 ~~~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIA 63 (715)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCcEEEEcCCCCcHHHHH
Confidence 678899999999999875
No 364
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=50.01 E-value=9.3 Score=37.30 Aligned_cols=21 Identities=14% Similarity=-0.012 Sum_probs=18.2
Q ss_pred EeCCeEEEEecCCCCCchhHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVF 214 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlL 214 (231)
+..|+-++|.+++|||||+..
T Consensus 238 l~~g~dvlv~apTGSGKTl~~ 258 (673)
T 2wv9_A 238 LKKRQLTVLDLHPGAGKTRRI 258 (673)
T ss_dssp GSTTCEEEECCCTTTTTTTTH
T ss_pred HhcCCeEEEEeCCCCCHHHHH
Confidence 347899999999999999964
No 365
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=48.72 E-value=9.8 Score=32.95 Aligned_cols=16 Identities=6% Similarity=-0.218 Sum_probs=12.9
Q ss_pred eEEEEecCCCCCchhH
Q 037424 198 SVNLADCLTFLHPLDV 213 (231)
Q Consensus 198 eMTLVLGrPGSGcSTl 213 (231)
+-++|-+|+|||||..
T Consensus 78 ~~~lv~a~TGsGKT~~ 93 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTAT 93 (414)
T ss_dssp CCEEECCCSCSSSHHH
T ss_pred CCEEEECCCCCcccHH
Confidence 3368899999999954
No 366
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=48.43 E-value=9.9 Score=30.28 Aligned_cols=16 Identities=13% Similarity=-0.149 Sum_probs=13.0
Q ss_pred eEEEEecCCCCCchhH
Q 037424 198 SVNLADCLTFLHPLDV 213 (231)
Q Consensus 198 eMTLVLGrPGSGcSTl 213 (231)
+=++|.+|+|||||..
T Consensus 52 ~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CCEEEECCCCCcHHHH
Confidence 3478999999999854
No 367
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=47.41 E-value=10 Score=31.68 Aligned_cols=17 Identities=12% Similarity=-0.115 Sum_probs=13.9
Q ss_pred CeEEEEecCCCCCchhH
Q 037424 197 GSVNLADCLTFLHPLDV 213 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTl 213 (231)
|+=++|.+|+|||||..
T Consensus 31 ~~~~lv~~~TGsGKT~~ 47 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAA 47 (337)
T ss_dssp TCCEEEECCTTSSHHHH
T ss_pred CCCEEEEcCCCCcHHHH
Confidence 45578999999999964
No 368
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=47.15 E-value=4.3 Score=38.82 Aligned_cols=18 Identities=6% Similarity=0.037 Sum_probs=16.4
Q ss_pred EEEEecCCCCCchhHHHHH
Q 037424 199 VNLADCLTFLHPLDVFQVL 217 (231)
Q Consensus 199 MTLVLGrPGSGcSTlLK~L 217 (231)
=+|+.|+||. ||+|+|.+
T Consensus 241 hVLL~G~PGt-KS~Lar~i 258 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHV 258 (506)
T ss_dssp CEEEESCHHH-HHHHHHHH
T ss_pred eEEEECCCCh-HHHHHHHH
Confidence 3688899999 99999998
No 369
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=46.47 E-value=11 Score=31.82 Aligned_cols=16 Identities=13% Similarity=-0.265 Sum_probs=13.2
Q ss_pred eEEEEecCCCCCchhH
Q 037424 198 SVNLADCLTFLHPLDV 213 (231)
Q Consensus 198 eMTLVLGrPGSGcSTl 213 (231)
+-++|.+|+|||||..
T Consensus 45 ~~~l~~~~TGsGKT~~ 60 (367)
T 1hv8_A 45 YNIVAQARTGSGKTAS 60 (367)
T ss_dssp SEEEEECCSSSSHHHH
T ss_pred CCEEEECCCCChHHHH
Confidence 4577889999999964
No 370
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.33 E-value=6.5 Score=45.26 Aligned_cols=23 Identities=4% Similarity=-0.304 Sum_probs=18.0
Q ss_pred EeCCeEEEEecCCCCCchhHHHH
Q 037424 194 LKPGSVNLADCLTFLHPLDVFQV 216 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTlLK~ 216 (231)
++-|.=+|+.||||+|||++++.
T Consensus 1301 l~~~~pvLL~GptGtGKT~li~~ 1323 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTMTLTS 1323 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHHHHHH
T ss_pred HHCCCcEEEECCCCCCHHHHHHH
Confidence 34456678999999999988754
No 371
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=45.98 E-value=11 Score=36.69 Aligned_cols=33 Identities=9% Similarity=-0.040 Sum_probs=24.0
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
.+++-+.=+.| |.-.++.|++|+|||+++..|+
T Consensus 221 rvID~l~Pigr-Gqr~~Ifgg~g~GKT~L~~~ia 253 (600)
T 3vr4_A 221 RVIDTFFPVTK-GGAAAVPGPFGAGKTVVQHQIA 253 (600)
T ss_dssp HHHHHHSCCBT-TCEEEEECCTTSCHHHHHHHHH
T ss_pred hhhhccCCccC-CCEEeeecCCCccHHHHHHHHH
Confidence 35555555665 4455777999999999999764
No 372
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=45.84 E-value=9.8 Score=33.47 Aligned_cols=16 Identities=13% Similarity=-0.170 Sum_probs=13.3
Q ss_pred CeEEEEecCCCCCchh
Q 037424 197 GSVNLADCLTFLHPLD 212 (231)
Q Consensus 197 GeMTLVLGrPGSGcST 212 (231)
|+=+++.+|+|||||.
T Consensus 36 ~~~~lv~apTGsGKT~ 51 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTT 51 (414)
T ss_dssp TCCEECCSCSSSSHHH
T ss_pred CCCEEEEeCCCCCHHH
Confidence 3456899999999997
No 373
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=45.29 E-value=15 Score=29.48 Aligned_cols=16 Identities=6% Similarity=-0.436 Sum_probs=12.9
Q ss_pred eEEEEecCCCCCchhH
Q 037424 198 SVNLADCLTFLHPLDV 213 (231)
Q Consensus 198 eMTLVLGrPGSGcSTl 213 (231)
+=+++.+|+|||||..
T Consensus 58 ~~~l~~apTGsGKT~~ 73 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLS 73 (228)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CCEEEECCCCChHHHH
Confidence 4468899999999864
No 374
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=44.88 E-value=7 Score=36.90 Aligned_cols=35 Identities=6% Similarity=0.001 Sum_probs=25.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+++-+.=+.|=+++ ++.|.+|.|||+|+..|+-
T Consensus 140 ir~ID~l~pigrGQr~-~Ifgg~G~GKt~Ll~~Ia~ 174 (469)
T 2c61_A 140 ISTIDGTNTLVRGQKL-PIFSASGLPHNEIALQIAR 174 (469)
T ss_dssp CHHHHTTSCCBTTCBC-CEEECTTSCHHHHHHHHHH
T ss_pred eEeeeeeeccccCCEE-EEECCCCCCHHHHHHHHHH
Confidence 3456666666666665 4569999999999997764
No 375
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=44.79 E-value=12 Score=35.93 Aligned_cols=20 Identities=5% Similarity=-0.041 Sum_probs=17.2
Q ss_pred EeCCeEEEEecCCCCCchhH
Q 037424 194 LKPGSVNLADCLTFLHPLDV 213 (231)
Q Consensus 194 iKPGeMTLVLGrPGSGcSTl 213 (231)
+..|+-+++.+|+|||||+.
T Consensus 183 l~~g~dvlv~a~TGSGKT~~ 202 (618)
T 2whx_A 183 FRKKRLTIMDLHPGAGKTKR 202 (618)
T ss_dssp GSTTCEEEECCCTTSSTTTT
T ss_pred HhcCCeEEEEcCCCCCHHHH
Confidence 34688999999999999985
No 376
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=44.42 E-value=11 Score=36.50 Aligned_cols=34 Identities=15% Similarity=-0.086 Sum_probs=25.6
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+++-+.=+.|=+ -.++.|++|+|||+++..|+
T Consensus 209 irvID~l~PigrGq-r~~Ifg~~g~GKT~l~~~ia 242 (578)
T 3gqb_A 209 MRILDVLFPVAMGG-TAAIPGPFGSGKSVTQQSLA 242 (578)
T ss_dssp CHHHHTTSCEETTC-EEEECCCTTSCHHHHHHHHH
T ss_pred chhhhhcccccCCC-EEeeeCCCCccHHHHHHHHH
Confidence 44666777677655 45677999999999999763
No 377
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=44.23 E-value=10 Score=36.19 Aligned_cols=34 Identities=9% Similarity=0.004 Sum_probs=24.4
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhH-HHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDV-FQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTl-LK~L~ 218 (231)
+.+++-+.=+.|=+ -.++.|+||.|||++ +.+|+
T Consensus 163 iraID~l~PigrGQ-R~~I~g~~g~GKT~Lal~~I~ 197 (515)
T 2r9v_A 163 IKAIDSMIPIGRGQ-RELIIGDRQTGKTAIAIDTII 197 (515)
T ss_dssp CHHHHHHSCEETTC-BEEEEEETTSSHHHHHHHHHH
T ss_pred ccccccccccccCC-EEEEEcCCCCCccHHHHHHHH
Confidence 33566666666544 557779999999999 77765
No 378
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=44.21 E-value=10 Score=37.24 Aligned_cols=19 Identities=11% Similarity=-0.262 Sum_probs=16.0
Q ss_pred eCCeEEEEecCCCCCchhH
Q 037424 195 KPGSVNLADCLTFLHPLDV 213 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTl 213 (231)
..|+-+++.+|.|||||+.
T Consensus 230 ~~~~~vlv~ApTGSGKT~a 248 (666)
T 3o8b_A 230 QSFQVAHLHAPTGSGKSTK 248 (666)
T ss_dssp SSCEEEEEECCTTSCTTTH
T ss_pred HcCCeEEEEeCCchhHHHH
Confidence 3577889999999999964
No 379
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=43.06 E-value=17 Score=29.99 Aligned_cols=16 Identities=6% Similarity=-0.346 Sum_probs=13.0
Q ss_pred eEEEEecCCCCCchhH
Q 037424 198 SVNLADCLTFLHPLDV 213 (231)
Q Consensus 198 eMTLVLGrPGSGcSTl 213 (231)
+=+++.+|+|||||..
T Consensus 81 ~~~lv~a~TGsGKT~~ 96 (249)
T 3ber_A 81 RDIIGLAETGSGKTGA 96 (249)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CCEEEEcCCCCCchhH
Confidence 4478889999999953
No 380
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=42.50 E-value=14 Score=29.31 Aligned_cols=15 Identities=7% Similarity=-0.157 Sum_probs=12.3
Q ss_pred eEEEEecCCCCCchh
Q 037424 198 SVNLADCLTFLHPLD 212 (231)
Q Consensus 198 eMTLVLGrPGSGcST 212 (231)
+=+++.+|+|||||.
T Consensus 52 ~~~li~~~TGsGKT~ 66 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTA 66 (220)
T ss_dssp CCEEEECCTTSCHHH
T ss_pred CCEEEECCCCCchhh
Confidence 337888999999984
No 381
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=42.33 E-value=11 Score=36.19 Aligned_cols=18 Identities=17% Similarity=-0.070 Sum_probs=15.5
Q ss_pred CeEEEEecCCCCCchhHH
Q 037424 197 GSVNLADCLTFLHPLDVF 214 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlL 214 (231)
|+-++|.||+|||||+..
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 677899999999999754
No 382
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=42.15 E-value=12 Score=31.12 Aligned_cols=16 Identities=19% Similarity=-0.280 Sum_probs=13.0
Q ss_pred eEEEEecCCCCCchhH
Q 037424 198 SVNLADCLTFLHPLDV 213 (231)
Q Consensus 198 eMTLVLGrPGSGcSTl 213 (231)
+=+++-+|+|||||..
T Consensus 92 ~~~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLA 107 (262)
T ss_dssp CCCEECCCTTSCHHHH
T ss_pred CcEEEEccCCCCchHH
Confidence 3467899999999964
No 383
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=41.96 E-value=18 Score=31.27 Aligned_cols=25 Identities=8% Similarity=-0.150 Sum_probs=19.5
Q ss_pred CCeEEEEecC-CCCCchhHHHHHHHH
Q 037424 196 PGSVNLADCL-TFLHPLDVFQVLFLL 220 (231)
Q Consensus 196 PGeMTLVLGr-PGSGcSTlLK~L~~~ 220 (231)
+++..+|.|. ||.||||+--.|+..
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~ 128 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAV 128 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHH
Confidence 4567788875 999999998777654
No 384
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=41.93 E-value=17 Score=29.63 Aligned_cols=17 Identities=12% Similarity=-0.298 Sum_probs=13.5
Q ss_pred CeEEEEecCCCCCchhH
Q 037424 197 GSVNLADCLTFLHPLDV 213 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTl 213 (231)
|+=+++.+|+|||||..
T Consensus 66 g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp TCCEEEEECTTSCHHHH
T ss_pred CCCEEEECCCcCHHHHH
Confidence 44567889999999865
No 385
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=41.76 E-value=16 Score=31.37 Aligned_cols=15 Identities=7% Similarity=-0.157 Sum_probs=12.4
Q ss_pred eEEEEecCCCCCchh
Q 037424 198 SVNLADCLTFLHPLD 212 (231)
Q Consensus 198 eMTLVLGrPGSGcST 212 (231)
+=++|.+|+|||||.
T Consensus 46 ~~~lv~a~TGsGKT~ 60 (391)
T 1xti_A 46 MDVLCQAKSGMGKTA 60 (391)
T ss_dssp CCEEEECSSCSSHHH
T ss_pred CcEEEECCCCCcHHH
Confidence 447888999999984
No 386
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=41.63 E-value=9.8 Score=37.00 Aligned_cols=34 Identities=9% Similarity=-0.118 Sum_probs=24.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..+++-+.=+.| |.-.++.|++|+|||+++..|+
T Consensus 215 irvID~l~Pigk-Gqr~~I~g~~g~GKT~L~~~ia 248 (588)
T 3mfy_A 215 QRVIDTFFPQAK-GGTAAIPGPAGSGKTVTQHQLA 248 (588)
T ss_dssp CHHHHHHSCEET-TCEEEECSCCSHHHHHHHHHHH
T ss_pred cchhhccCCccc-CCeEEeecCCCCCHHHHHHHHH
Confidence 345666666665 4455778999999999998863
No 387
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=41.24 E-value=12 Score=35.66 Aligned_cols=35 Identities=11% Similarity=-0.082 Sum_probs=25.0
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~~ 219 (231)
+.+++-+.=+.|=++ .++.|++|.|||+|+.-|+.
T Consensus 153 irvID~l~pigkGqr-~gIfgg~GvGKT~L~~~l~~ 187 (498)
T 1fx0_B 153 IKVVNLLAPYRRGGK-IGLFGGAGVGKTVLIMELIN 187 (498)
T ss_dssp CTTHHHHSCCCTTCC-EEEEECSSSSHHHHHHHHHH
T ss_pred eeEeeeecccccCCe-EEeecCCCCCchHHHHHHHH
Confidence 334555555555554 56779999999999988765
No 388
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=41.24 E-value=10 Score=36.12 Aligned_cols=33 Identities=6% Similarity=-0.034 Sum_probs=23.4
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhH-HHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDV-FQVLF 218 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTl-LK~L~ 218 (231)
.+++-+.=+.|=+ -.++.|+||.|||++ +..|+
T Consensus 151 raID~l~PigrGQ-R~~Ifg~~g~GKT~Lal~~I~ 184 (502)
T 2qe7_A 151 KAIDSMIPIGRGQ-RELIIGDRQTGKTTIAIDTII 184 (502)
T ss_dssp HHHHHSSCCBTTC-BCEEEECSSSCHHHHHHHHHH
T ss_pred eecccccccccCC-EEEEECCCCCCchHHHHHHHH
Confidence 3455555555544 457779999999999 77765
No 389
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=41.03 E-value=17 Score=30.35 Aligned_cols=14 Identities=7% Similarity=-0.221 Sum_probs=12.3
Q ss_pred EEecCCCCCchhHH
Q 037424 201 LADCLTFLHPLDVF 214 (231)
Q Consensus 201 LVLGrPGSGcSTlL 214 (231)
+|.+++|||||...
T Consensus 132 ll~~~tGsGKT~~~ 145 (282)
T 1rif_A 132 ILNLPTSAGRSLIQ 145 (282)
T ss_dssp EECCCTTSCHHHHH
T ss_pred EEEcCCCCCcHHHH
Confidence 67899999999876
No 390
>2gol_A Matrix protein P17 (MA); viral maturation, immature, GAG, HIV-1, viral protein; 2.20A {Human immunodeficiency virus 1} SCOP: a.61.1.1 PDB: 1hiw_A 2hmx_A 2h3f_A 2h3i_A* 2h3q_A* 2h3v_A* 2h3z_A* 1uph_A* 2nv3_A* 2jmg_A* 1tam_A
Probab=40.05 E-value=12 Score=29.66 Aligned_cols=14 Identities=36% Similarity=1.042 Sum_probs=10.3
Q ss_pred HHHHH--HHHHHHHhh
Q 037424 214 FQVLF--LLVLWCLHA 227 (231)
Q Consensus 214 LK~L~--~~~~~~~~~ 227 (231)
||+|| +.+|||+|.
T Consensus 76 LkSL~NtvatLyCVHq 91 (133)
T 2gol_A 76 LRSLYNTIAVLYCVHQ 91 (133)
T ss_dssp THHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhheeeeee
Confidence 56666 457999996
No 391
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=39.94 E-value=11 Score=36.02 Aligned_cols=35 Identities=6% Similarity=-0.071 Sum_probs=24.3
Q ss_pred cccccceeEEeCCeEEEEecCCCCCchhH-HHHHHHH
Q 037424 185 NILNRVSGILKPGSVNLADCLTFLHPLDV-FQVLFLL 220 (231)
Q Consensus 185 ~IL~dVSGiiKPGeMTLVLGrPGSGcSTl-LK~L~~~ 220 (231)
.+++-+.=+.|=+ -.++.|+||.|||++ |..|+=-
T Consensus 151 raID~l~PigrGQ-R~~I~g~~g~GKT~Lal~~I~~q 186 (510)
T 2ck3_A 151 KAVDSLVPIGRGQ-RELIIGDRQTGKTSIAIDTIINQ 186 (510)
T ss_dssp HHHHHHSCCBTTC-BCEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeccccccccCC-EEEEecCCCCCchHHHHHHHHHH
Confidence 3455555555444 457779999999999 7776543
No 392
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=39.85 E-value=21 Score=30.31 Aligned_cols=26 Identities=4% Similarity=-0.221 Sum_probs=19.6
Q ss_pred CCeEEEEec-CCCCCchhHHHHHHHHH
Q 037424 196 PGSVNLADC-LTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 196 PGeMTLVLG-rPGSGcSTlLK~L~~~~ 221 (231)
+.+..+|.| .||.||||+--.|+..+
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~l 107 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAY 107 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence 456677776 59999999987777543
No 393
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=39.81 E-value=20 Score=29.02 Aligned_cols=17 Identities=24% Similarity=-0.103 Sum_probs=13.4
Q ss_pred CeEEEEecCCCCCchhH
Q 037424 197 GSVNLADCLTFLHPLDV 213 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTl 213 (231)
|+=+++.+|+|||||..
T Consensus 66 ~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLA 82 (245)
T ss_dssp TCCEEEECCTTSCHHHH
T ss_pred CCCEEEECCCCCcHHHH
Confidence 34468999999999863
No 394
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=38.85 E-value=9.7 Score=36.35 Aligned_cols=34 Identities=6% Similarity=-0.057 Sum_probs=24.7
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhH-HHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDV-FQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTl-LK~L~ 218 (231)
+.+++-+.=+.|=++ .++.|+||.|||++ +..|+
T Consensus 151 iraID~l~PigrGQR-~~Ifg~~g~GKT~Lal~~I~ 185 (507)
T 1fx0_A 151 LIAIDAMIPVGRGQR-ELIIGDRQTGKTAVATDTIL 185 (507)
T ss_dssp CTTTTTTSCCBTTCB-CBEEESSSSSHHHHHHHHHH
T ss_pred ceecccccccccCCE-EEEecCCCCCccHHHHHHHH
Confidence 445666666665554 46779999999999 77765
No 395
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=38.05 E-value=18 Score=31.42 Aligned_cols=17 Identities=12% Similarity=-0.295 Sum_probs=14.1
Q ss_pred CCeEEEEecCCCCCchh
Q 037424 196 PGSVNLADCLTFLHPLD 212 (231)
Q Consensus 196 PGeMTLVLGrPGSGcST 212 (231)
.|+=++|.+|+|||||.
T Consensus 51 ~~~~~lv~a~TGsGKT~ 67 (417)
T 2i4i_A 51 EKRDLMACAQTGSGKTA 67 (417)
T ss_dssp TTCCEEEECCTTSCHHH
T ss_pred cCCCEEEEcCCCCHHHH
Confidence 35667899999999985
No 396
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=37.92 E-value=18 Score=30.73 Aligned_cols=17 Identities=12% Similarity=-0.048 Sum_probs=13.9
Q ss_pred CCeEEEEecCCCCCchh
Q 037424 196 PGSVNLADCLTFLHPLD 212 (231)
Q Consensus 196 PGeMTLVLGrPGSGcST 212 (231)
+++-++|-+|+|||||.
T Consensus 43 ~~~~~lv~a~TGsGKT~ 59 (395)
T 3pey_A 43 PPRNMIAQSQSGTGKTA 59 (395)
T ss_dssp SCCCEEEECCTTSCHHH
T ss_pred CCCeEEEECCCCCcHHH
Confidence 44667889999999985
No 397
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=37.83 E-value=15 Score=32.03 Aligned_cols=21 Identities=5% Similarity=-0.271 Sum_probs=17.6
Q ss_pred eCCeEEEEecCCCCCchhHHHHHH
Q 037424 195 KPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
..|+++.|+|| ||+|+++.|.
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~ 123 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLL 123 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHH
T ss_pred CCCCEEEEECC---CHHHHHHHHH
Confidence 46789999997 7999999864
No 398
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=36.89 E-value=20 Score=36.55 Aligned_cols=18 Identities=17% Similarity=-0.001 Sum_probs=15.2
Q ss_pred CCeEEEEecCCCCCchhH
Q 037424 196 PGSVNLADCLTFLHPLDV 213 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTl 213 (231)
.|+-++|.+|+|||||+.
T Consensus 53 ~g~~vlv~apTGsGKTlv 70 (997)
T 4a4z_A 53 QGDSVFVAAHTSAGKTVV 70 (997)
T ss_dssp TTCEEEEECCTTSCSHHH
T ss_pred cCCCEEEEECCCCcHHHH
Confidence 356789999999999974
No 399
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=36.55 E-value=19 Score=31.10 Aligned_cols=15 Identities=13% Similarity=-0.241 Sum_probs=12.4
Q ss_pred eEEEEecCCCCCchh
Q 037424 198 SVNLADCLTFLHPLD 212 (231)
Q Consensus 198 eMTLVLGrPGSGcST 212 (231)
+=++|.+|+|||||.
T Consensus 59 ~~~li~a~TGsGKT~ 73 (400)
T 1s2m_A 59 RDILARAKNGTGKTA 73 (400)
T ss_dssp CCEEEECCTTSCHHH
T ss_pred CCEEEECCCCcHHHH
Confidence 337889999999995
No 400
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=36.51 E-value=10 Score=30.85 Aligned_cols=16 Identities=6% Similarity=-0.218 Sum_probs=12.8
Q ss_pred eEEEEecCCCCCchhH
Q 037424 198 SVNLADCLTFLHPLDV 213 (231)
Q Consensus 198 eMTLVLGrPGSGcSTl 213 (231)
+=+++.+|+|||||..
T Consensus 68 ~~~li~apTGsGKT~~ 83 (237)
T 3bor_A 68 YDVIAQAQSGTGKTAT 83 (237)
T ss_dssp CCEEECCCSSHHHHHH
T ss_pred CCEEEECCCCCcHHHH
Confidence 3478899999999954
No 401
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=35.88 E-value=17 Score=32.49 Aligned_cols=20 Identities=10% Similarity=-0.137 Sum_probs=17.0
Q ss_pred EEEecCCCCCchhHHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~~ 219 (231)
+|+.|.+|+||+++-+.|.-
T Consensus 163 vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 163 VLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred eEEecCCCcCHHHHHHHHHH
Confidence 58999999999998887653
No 402
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=35.86 E-value=24 Score=28.69 Aligned_cols=17 Identities=12% Similarity=-0.285 Sum_probs=13.3
Q ss_pred CeEEEEecCCCCCchhH
Q 037424 197 GSVNLADCLTFLHPLDV 213 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTl 213 (231)
|+=+++.+|+|||||..
T Consensus 60 ~~~~l~~a~TGsGKT~~ 76 (253)
T 1wrb_A 60 HRDIMACAQTGSGKTAA 76 (253)
T ss_dssp TCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCChHHHH
Confidence 34578889999999843
No 403
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=35.84 E-value=21 Score=30.76 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=14.5
Q ss_pred CCeEEEEecCCCCCchhH
Q 037424 196 PGSVNLADCLTFLHPLDV 213 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTl 213 (231)
.++-++|.+|+|||||..
T Consensus 63 ~~~~~lv~apTGsGKT~~ 80 (412)
T 3fht_A 63 PPQNLIAQSQSGTGKTAA 80 (412)
T ss_dssp SCCCEEEECCTTSCHHHH
T ss_pred CCCeEEEECCCCchHHHH
Confidence 456778999999999854
No 404
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=35.67 E-value=14 Score=35.39 Aligned_cols=32 Identities=9% Similarity=0.029 Sum_probs=22.5
Q ss_pred ccccceeEEeCCeEEEEecCCCCCchhH-HHHHH
Q 037424 186 ILNRVSGILKPGSVNLADCLTFLHPLDV-FQVLF 218 (231)
Q Consensus 186 IL~dVSGiiKPGeMTLVLGrPGSGcSTl-LK~L~ 218 (231)
+++-+.=+.| |.-.++.|.+|.|||++ +.+|+
T Consensus 152 aID~l~Pigr-GQR~~Ifg~~g~GKT~l~l~~I~ 184 (513)
T 3oaa_A 152 AVDSMIPIGR-GQRELIIGDRQTGKTALAIDAII 184 (513)
T ss_dssp HHHHHSCCBT-TCBCEEEESSSSSHHHHHHHHHH
T ss_pred eecccccccc-CCEEEeecCCCCCcchHHHHHHH
Confidence 4555554554 44557789999999999 67764
No 405
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=35.45 E-value=23 Score=31.86 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=15.3
Q ss_pred CCeEEEEecCCCCCchhH
Q 037424 196 PGSVNLADCLTFLHPLDV 213 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTl 213 (231)
+++-+++-+|+|||||..
T Consensus 130 ~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 130 PPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp SCCEEEEECCSSSSHHHH
T ss_pred CCCcEEEEcCCCCchhHH
Confidence 567889999999999854
No 406
>1ed1_A GAG polyprotein, SIV MA; trimeric association, viral protein; 2.10A {Simian immunodeficiency virus - mac} SCOP: a.61.1.1 PDB: 1ecw_A 2k4e_A 2k4h_A* 2k4i_A*
Probab=34.78 E-value=20 Score=28.43 Aligned_cols=17 Identities=35% Similarity=1.046 Sum_probs=12.7
Q ss_pred hhHHHHHH--HHHHHHHhh
Q 037424 211 LDVFQVLF--LLVLWCLHA 227 (231)
Q Consensus 211 STlLK~L~--~~~~~~~~~ 227 (231)
|-=||+|| +.+|||+|.
T Consensus 72 SeeLkSL~ntva~LyCvH~ 90 (135)
T 1ed1_A 72 SENLKSLYNTVCVIWCIHA 90 (135)
T ss_dssp CHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhheeeEeEe
Confidence 44577777 567999996
No 407
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=34.29 E-value=9.5 Score=36.65 Aligned_cols=18 Identities=17% Similarity=-0.145 Sum_probs=15.5
Q ss_pred CeEEEEecCCCCCchhHH
Q 037424 197 GSVNLADCLTFLHPLDVF 214 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlL 214 (231)
|+-++|.+|+|||||+..
T Consensus 40 ~~~~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLA 57 (702)
T ss_dssp CSCEEEECSSHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 677899999999999854
No 408
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=33.15 E-value=33 Score=30.19 Aligned_cols=26 Identities=0% Similarity=-0.279 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLLV 221 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~~ 221 (231)
+-.+..+-|++|.||||+--.|+..+
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~l 50 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYL 50 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHH
Confidence 34577888999999999988887653
No 409
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=32.82 E-value=14 Score=29.39 Aligned_cols=15 Identities=7% Similarity=-0.179 Sum_probs=12.3
Q ss_pred eEEEEecCCCCCchh
Q 037424 198 SVNLADCLTFLHPLD 212 (231)
Q Consensus 198 eMTLVLGrPGSGcST 212 (231)
+=+++.+|+|||||.
T Consensus 42 ~~~lv~a~TGsGKT~ 56 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTH 56 (219)
T ss_dssp CCEEEECCSSHHHHH
T ss_pred CCEEEECCCCChHHH
Confidence 446788999999985
No 410
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=32.82 E-value=31 Score=30.45 Aligned_cols=26 Identities=12% Similarity=-0.078 Sum_probs=20.1
Q ss_pred eCCeEEEEec-CCCCCchhHHHHHHHH
Q 037424 195 KPGSVNLADC-LTFLHPLDVFQVLFLL 220 (231)
Q Consensus 195 KPGeMTLVLG-rPGSGcSTlLK~L~~~ 220 (231)
++++...|.| ..|.||||+--.|+..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~ 167 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIA 167 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHH
Confidence 4567778875 9999999997776653
No 411
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=32.34 E-value=25 Score=30.06 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=15.1
Q ss_pred CCeEEEEecCCCCCchhH
Q 037424 196 PGSVNLADCLTFLHPLDV 213 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTl 213 (231)
||+=+++.+|+|||||..
T Consensus 130 ~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 130 PPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp SCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCccHH
Confidence 567788999999998864
No 412
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=31.86 E-value=15 Score=34.66 Aligned_cols=34 Identities=6% Similarity=-0.006 Sum_probs=24.8
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.+++-+.=+.|=++ .++.|.+|.|||+|+..|+
T Consensus 139 iraID~l~pigrGQr-~~Ifgg~G~GKt~L~~~Ia 172 (465)
T 3vr4_D 139 ISAIDHLNTLVRGQK-LPVFSGSGLPHKELAAQIA 172 (465)
T ss_dssp CHHHHTTSCCBTTCB-CCEEECTTSCHHHHHHHHH
T ss_pred ceEEecccccccCCE-EEEeCCCCcChHHHHHHHH
Confidence 345666666666555 4677999999999998754
No 413
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=31.17 E-value=42 Score=30.75 Aligned_cols=17 Identities=12% Similarity=-0.275 Sum_probs=14.8
Q ss_pred CCeEEEEecCCCCCchh
Q 037424 196 PGSVNLADCLTFLHPLD 212 (231)
Q Consensus 196 PGeMTLVLGrPGSGcST 212 (231)
.|+-++|.+|+|||||.
T Consensus 110 ~~~~~lv~apTGsGKTl 126 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTF 126 (563)
T ss_dssp SSEEEEEECCTTSCHHH
T ss_pred CCCeEEEECCCCCCccH
Confidence 56788999999999985
No 414
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=31.16 E-value=27 Score=28.10 Aligned_cols=17 Identities=12% Similarity=-0.140 Sum_probs=13.3
Q ss_pred CeEEEEecCCCCCchhH
Q 037424 197 GSVNLADCLTFLHPLDV 213 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTl 213 (231)
|+=+++.+|+|||||..
T Consensus 61 ~~~~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCV 77 (230)
T ss_dssp TCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCcHHHH
Confidence 34478899999999853
No 415
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=30.77 E-value=36 Score=31.96 Aligned_cols=25 Identities=0% Similarity=-0.217 Sum_probs=20.1
Q ss_pred CCeEEEEecCCCCCchhHHHHHHHH
Q 037424 196 PGSVNLADCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTlLK~L~~~ 220 (231)
+..++++.|++|.||||+--.|+..
T Consensus 326 ~~~~~~~~~~~g~Gktt~a~~lA~~ 350 (589)
T 1ihu_A 326 EHGLIMLMGKGGVGKTTMAAAIAVR 350 (589)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCChhhHHHHHHHH
Confidence 3467888999999999997776654
No 416
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=30.67 E-value=32 Score=31.08 Aligned_cols=16 Identities=6% Similarity=-0.228 Sum_probs=13.5
Q ss_pred EEEEecCCCCCchhHH
Q 037424 199 VNLADCLTFLHPLDVF 214 (231)
Q Consensus 199 MTLVLGrPGSGcSTlL 214 (231)
-.+|.|++|||||...
T Consensus 130 ~~ll~~~tGsGKT~~~ 145 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQ 145 (510)
T ss_dssp EEEEECCSTTTHHHHH
T ss_pred CcEEEeCCCCCHHHHH
Confidence 3588999999999876
No 417
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=30.13 E-value=14 Score=34.84 Aligned_cols=34 Identities=6% Similarity=-0.023 Sum_probs=24.5
Q ss_pred ccccccceeEEeCCeEEEEecCCCCCchhHHHHHH
Q 037424 184 INILNRVSGILKPGSVNLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 184 ~~IL~dVSGiiKPGeMTLVLGrPGSGcSTlLK~L~ 218 (231)
+.+++-+.=+.|=++ .++.|.+|.|||+|+..|+
T Consensus 135 iraID~l~pigrGQr-~~Ifgg~G~GKt~L~~~Ia 168 (464)
T 3gqb_B 135 ISTIDVMNTLVRGQK-LPIFSGSGLPANEIAAQIA 168 (464)
T ss_dssp CHHHHTTSCCBTTCB-CCEEEETTSCHHHHHHHHH
T ss_pred ceeeecccccccCCE-EEEecCCCCCchHHHHHHH
Confidence 345666666666454 4677999999999997654
No 418
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=28.15 E-value=32 Score=28.77 Aligned_cols=23 Identities=0% Similarity=-0.240 Sum_probs=17.7
Q ss_pred CeEEEEec---CCCCCchhHHHHHHH
Q 037424 197 GSVNLADC---LTFLHPLDVFQVLFL 219 (231)
Q Consensus 197 GeMTLVLG---rPGSGcSTlLK~L~~ 219 (231)
++...|.+ +.|.||||+--.|+.
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~ 59 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAY 59 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHH
Confidence 45666665 999999999777764
No 419
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=27.67 E-value=29 Score=30.83 Aligned_cols=19 Identities=11% Similarity=-0.178 Sum_probs=16.7
Q ss_pred EEEecCCCCCchhHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLF 218 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~ 218 (231)
+|+.|.||+||+++-+.|.
T Consensus 155 vli~GesGtGKe~lAr~ih 173 (368)
T 3dzd_A 155 VLITGESGTGKEIVARLIH 173 (368)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred heEEeCCCchHHHHHHHHH
Confidence 6788999999999988764
No 420
>4ds7_E Spindle POLE BODY component 110; protein binding, metal binding, structura; 2.15A {Saccharomyces cerevisiae S288C}
Probab=27.53 E-value=33 Score=22.98 Aligned_cols=14 Identities=43% Similarity=0.785 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhh
Q 037424 214 FQVLFLLVLWCLHA 227 (231)
Q Consensus 214 LK~L~~~~~~~~~~ 227 (231)
+|+++|+||-|.-.
T Consensus 12 FKTVAL~VlaciRM 25 (55)
T 4ds7_E 12 FKTVALLVLACVRM 25 (55)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 79999999999753
No 421
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=26.98 E-value=33 Score=29.67 Aligned_cols=16 Identities=6% Similarity=-0.191 Sum_probs=12.7
Q ss_pred eEEEEecCCCCCchhH
Q 037424 198 SVNLADCLTFLHPLDV 213 (231)
Q Consensus 198 eMTLVLGrPGSGcSTl 213 (231)
+=++|-+|+|||||..
T Consensus 75 ~~~lv~a~TGsGKT~~ 90 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTAT 90 (410)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CCEEEECCCCCCchHH
Confidence 3478889999999853
No 422
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=26.65 E-value=35 Score=32.43 Aligned_cols=18 Identities=11% Similarity=-0.234 Sum_probs=14.7
Q ss_pred CeEEEEecCCCCCchhHH
Q 037424 197 GSVNLADCLTFLHPLDVF 214 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlL 214 (231)
|+=++|..|+|+|||...
T Consensus 59 g~d~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 59 GKEVFLVMPTGGGKSLCY 76 (591)
T ss_dssp TCCEEEECCTTSCTTHHH
T ss_pred CCCEEEEECCCChHHHHH
Confidence 556899999999999643
No 423
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=26.12 E-value=42 Score=28.76 Aligned_cols=24 Identities=13% Similarity=-0.099 Sum_probs=17.4
Q ss_pred CeEEEEec-CCCCCchhHHHHHHHH
Q 037424 197 GSVNLADC-LTFLHPLDVFQVLFLL 220 (231)
Q Consensus 197 GeMTLVLG-rPGSGcSTlLK~L~~~ 220 (231)
++.++|.| .||.||||+--.|+..
T Consensus 92 ~kvI~vts~kgG~GKTtva~nLA~~ 116 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFVCANLAAV 116 (286)
T ss_dssp CCEEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHH
Confidence 44555665 6999999987777654
No 424
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=25.45 E-value=37 Score=32.08 Aligned_cols=20 Identities=10% Similarity=-0.164 Sum_probs=17.0
Q ss_pred EEEecCCCCCchhHHHHHHH
Q 037424 200 NLADCLTFLHPLDVFQVLFL 219 (231)
Q Consensus 200 TLVLGrPGSGcSTlLK~L~~ 219 (231)
..|+|-++||||||.-.|..
T Consensus 34 iaIiaHvdaGKTTLtE~lL~ 53 (548)
T 3vqt_A 34 FAIISHPDAGKTTLTEKLLL 53 (548)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 45889999999999988753
No 425
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=24.82 E-value=34 Score=34.98 Aligned_cols=16 Identities=13% Similarity=-0.191 Sum_probs=13.3
Q ss_pred CeEEEEecCCCCCchh
Q 037424 197 GSVNLADCLTFLHPLD 212 (231)
Q Consensus 197 GeMTLVLGrPGSGcST 212 (231)
|+=+++.+|+|||||.
T Consensus 71 g~dvlv~apTGSGKTl 86 (1054)
T 1gku_B 71 KESFAATAPTGVGKTS 86 (1054)
T ss_dssp TCCEECCCCBTSCSHH
T ss_pred CCCEEEEcCCCCCHHH
Confidence 3557899999999995
No 426
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=24.42 E-value=28 Score=35.93 Aligned_cols=19 Identities=21% Similarity=0.039 Sum_probs=15.8
Q ss_pred eCCeEEEEecCCCCCchhH
Q 037424 195 KPGSVNLADCLTFLHPLDV 213 (231)
Q Consensus 195 KPGeMTLVLGrPGSGcSTl 213 (231)
..|+-++|.++.|||||+.
T Consensus 197 ~~g~dvLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 197 DRGESVLVSAHTSAGKTVV 215 (1108)
T ss_dssp TTTCCEEEECCSSSHHHHH
T ss_pred HcCCCEEEECCCCCChHHH
Confidence 4567789999999999975
No 427
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=24.10 E-value=23 Score=30.29 Aligned_cols=15 Identities=13% Similarity=-0.155 Sum_probs=12.4
Q ss_pred EEEEecCCCCCchhH
Q 037424 199 VNLADCLTFLHPLDV 213 (231)
Q Consensus 199 MTLVLGrPGSGcSTl 213 (231)
=++|.+|+|||||..
T Consensus 60 ~~lv~~~TGsGKT~~ 74 (394)
T 1fuu_A 60 DVLAQAQSGTGKTGT 74 (394)
T ss_dssp CEEECCCSSHHHHHH
T ss_pred CEEEECCCCChHHHH
Confidence 368899999999854
No 428
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=23.93 E-value=58 Score=26.65 Aligned_cols=24 Identities=8% Similarity=-0.168 Sum_probs=17.3
Q ss_pred CeEEEE-ecCCCCCchhHHHHHHHH
Q 037424 197 GSVNLA-DCLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 197 GeMTLV-LGrPGSGcSTlLK~L~~~ 220 (231)
++...| =++.|+||||+--.|+..
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~ 51 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATL 51 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHH
Confidence 444444 578899999998777653
No 429
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=23.85 E-value=43 Score=30.72 Aligned_cols=18 Identities=6% Similarity=-0.079 Sum_probs=14.5
Q ss_pred CCeEEEEecCCCCCchhH
Q 037424 196 PGSVNLADCLTFLHPLDV 213 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTl 213 (231)
.++-++|.+|+|||||..
T Consensus 157 ~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 157 PPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp SCCCEEEECCSSTTSHHH
T ss_pred CCCCEEEECCCCccHHHH
Confidence 346778899999999963
No 430
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=23.83 E-value=67 Score=29.80 Aligned_cols=18 Identities=11% Similarity=-0.258 Sum_probs=15.0
Q ss_pred CCeEEEEecCCCCCchhH
Q 037424 196 PGSVNLADCLTFLHPLDV 213 (231)
Q Consensus 196 PGeMTLVLGrPGSGcSTl 213 (231)
.|+-+++.+|+|||||..
T Consensus 59 ~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCCeEEEEcCCCcHHHHH
Confidence 567788999999999863
No 431
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=22.54 E-value=45 Score=34.42 Aligned_cols=16 Identities=6% Similarity=-0.305 Sum_probs=13.2
Q ss_pred eEEEEecCCCCCchhH
Q 037424 198 SVNLADCLTFLHPLDV 213 (231)
Q Consensus 198 eMTLVLGrPGSGcSTl 213 (231)
+=+++.+|+|||||.+
T Consensus 94 ~dvlv~ApTGSGKTl~ 109 (1104)
T 4ddu_A 94 KSFTMVAPTGVGKTTF 109 (1104)
T ss_dssp CCEEECCSTTCCHHHH
T ss_pred CCEEEEeCCCCcHHHH
Confidence 4467999999999983
No 432
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=22.10 E-value=58 Score=33.23 Aligned_cols=18 Identities=22% Similarity=0.006 Sum_probs=15.2
Q ss_pred CeEEEEecCCCCCchhHH
Q 037424 197 GSVNLADCLTFLHPLDVF 214 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTlL 214 (231)
|+=++|-+|+|||||...
T Consensus 101 g~~vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 101 GESVLVSAHTSAGKTVVA 118 (1010)
T ss_dssp TCEEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCChHHHH
Confidence 456889999999999865
No 433
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=21.10 E-value=66 Score=28.37 Aligned_cols=25 Identities=8% Similarity=-0.261 Sum_probs=18.5
Q ss_pred CCeEEEEe-cCCCCCchhHHHHHHHH
Q 037424 196 PGSVNLAD-CLTFLHPLDVFQVLFLL 220 (231)
Q Consensus 196 PGeMTLVL-GrPGSGcSTlLK~L~~~ 220 (231)
+++...|. |+.|.||||+--.|+..
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~ 132 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHA 132 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHH
Confidence 45555565 89999999987777653
No 434
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=20.70 E-value=54 Score=29.20 Aligned_cols=14 Identities=14% Similarity=-0.304 Sum_probs=12.3
Q ss_pred EEEecCCCCCchhH
Q 037424 200 NLADCLTFLHPLDV 213 (231)
Q Consensus 200 TLVLGrPGSGcSTl 213 (231)
.+|.+++|||||..
T Consensus 111 ~ll~~~TGsGKT~~ 124 (472)
T 2fwr_A 111 GCIVLPTGSGKTHV 124 (472)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEEeCCCCCHHHH
Confidence 67889999999975
No 435
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=20.48 E-value=59 Score=30.54 Aligned_cols=17 Identities=18% Similarity=-0.127 Sum_probs=14.0
Q ss_pred CeEEEEecCCCCCchhH
Q 037424 197 GSVNLADCLTFLHPLDV 213 (231)
Q Consensus 197 GeMTLVLGrPGSGcSTl 213 (231)
|+=++|.+|.|||||..
T Consensus 28 g~~~iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 28 GKNTIICAPTGCGKTFV 44 (696)
T ss_dssp TCCEEEECCTTSSHHHH
T ss_pred CCCEEEEcCCCchHHHH
Confidence 44578999999999984
No 436
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=20.10 E-value=63 Score=26.65 Aligned_cols=25 Identities=0% Similarity=-0.384 Sum_probs=19.8
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHH
Q 037424 198 SVNLADCLTFLHPLDVFQVLFLLVL 222 (231)
Q Consensus 198 eMTLVLGrPGSGcSTlLK~L~~~~~ 222 (231)
-+++|.+.+|-||||.-=.+++=++
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~ 53 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV 53 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3889999999999998766665543
Done!