BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037425
(141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 30 SGMDLAMKLHYLKGFYIFRSHAVQGL-SVKLIKESTFYLFNNYYWTCARLRRSDSGRPYL 88
S +DL + + Y +R K++K++ +Y RL+R + GR +
Sbjct: 30 SNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEI 89
Query: 89 KCNDCGARFVEAQCDKTVDELLEMGDYS 116
+CN G FVEA+ D VD+ GD++
Sbjct: 90 ECNGEGVLFVEAESDGVVDDF---GDFA 114
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 30 SGMDLAMKLHYLKGFYIFRSHAVQGL-SVKLIKESTFYLFNNYYWTCARLRRSDSGRPYL 88
S +DL + + Y +R K++K++ +Y RL+R + GR +
Sbjct: 30 SNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEI 89
Query: 89 KCNDCGARFVEAQCDKTVDELLEMGDYS 116
+CN G FVEA+ D VD+ GD++
Sbjct: 90 ECNGEGVLFVEAESDGVVDDF---GDFA 114
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 30 SGMDLAMKLHYLKGFYIFRSHAVQGL-SVKLIKESTFYLFNNYYWTCARLRRSDSGRPYL 88
S +DL + + Y +R K++K++ +Y RL+R + GR +
Sbjct: 27 SNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEI 86
Query: 89 KCNDCGARFVEAQCDKTVDELLEMGDYS 116
+CN G FVEA+ D VD+ GD++
Sbjct: 87 ECNGEGVLFVEAESDGVVDDF---GDFA 111
>pdb|2RE1|A Chain A, Crystal Structure Of Aspartokinase Alpha And Beta Subunits
pdb|2RE1|B Chain B, Crystal Structure Of Aspartokinase Alpha And Beta Subunits
Length = 167
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 5 LLIHSIRLSSVGPGKATGSDVVHELSGMDLAMKLHYLKGFYIFRSHAVQGLSVKLIKEST 64
L I S R S+G G D V ++S + L + H IFR+ A +G++++ I S
Sbjct: 82 LEILSERQDSIGAASIDGDDTVCKVSAVGLGXRSHVGVAAKIFRTLAEEGINIQXISTSE 141
Query: 65 FYL 67
+
Sbjct: 142 IKV 144
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex
With A H3k4me3 Peptide
Length = 75
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 68 FNNYYWTCARLRRSDSGRPYLKCNDC 93
+ N W C + D G P + C+DC
Sbjct: 14 WGNQIWICPGCNKPDDGSPMIGCDDC 39
>pdb|3N09|A Chain A, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|B Chain B, Atomic Model Of An Infectious Rotavirus Particle
Length = 800
Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 106 VDELLEMGDYSSFPNLLVYHQPIG 129
++EL+ GDY+ N+L+ +QP+
Sbjct: 655 LEELMRTGDYAQITNMLLNNQPVA 678
>pdb|3KZ4|A Chain A, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|B Chain B, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|4F5X|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 880
Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 106 VDELLEMGDYSSFPNLLVYHQPIG 129
++EL+ GDY+ N+L+ +QP+
Sbjct: 735 LEELMRTGDYAQITNMLLNNQPVA 758
>pdb|3GZU|A Chain A, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|B Chain B, Vp7 Recoated Rotavirus Dlp
Length = 800
Score = 28.1 bits (61), Expect = 1.7, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 106 VDELLEMGDYSSFPNLLVYHQPIG 129
++EL+ GDY+ N+L+ +QP+
Sbjct: 655 LEELMRTGDYAQITNMLLNNQPVA 678
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 85 RPYLKCNDCGARFVEAQCDKTVDELLEMGDYSSFPN 120
+PY KCN+CG F A + T +++ G+ S P+
Sbjct: 11 KPY-KCNECGKAF-RAHSNLTTHQVIHTGEKPSGPS 44
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 60 IKESTFYLFNNYYWTCARLRRSDSGRPYLKCNDCGARFVEAQCDKTVDELLE 111
+K+S + ++Y R+ + S + CND G FVEA+ + + ++
Sbjct: 63 LKQSLSKVLTHFYPLAGRINVNSS----VDCNDSGVPFVEARVQAQLSQAIQ 110
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 26.2 bits (56), Expect = 7.2, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 83 SGRPYLKCNDCGARFVEAQC 102
SG+ L CN+CG F ++ C
Sbjct: 6 SGKKPLVCNECGKTFRQSSC 25
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,344,237
Number of Sequences: 62578
Number of extensions: 162930
Number of successful extensions: 503
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 494
Number of HSP's gapped (non-prelim): 12
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)