Query 037425
Match_columns 141
No_of_seqs 115 out of 1027
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 12:05:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03157 spermidine hydroxycin 100.0 5.1E-34 1.1E-38 238.2 12.2 135 5-141 1-137 (447)
2 PLN02663 hydroxycinnamoyl-CoA: 100.0 5.3E-32 1.2E-36 224.9 12.1 135 5-141 1-136 (431)
3 PF02458 Transferase: Transfer 100.0 4.1E-31 8.9E-36 218.0 9.8 134 5-141 1-138 (432)
4 PLN02481 Omega-hydroxypalmitat 100.0 1.9E-29 4.1E-34 210.3 12.6 134 5-141 12-149 (436)
5 PLN00140 alcohol acetyltransfe 100.0 1.7E-29 3.7E-34 211.2 9.5 131 5-141 1-139 (444)
6 PF11631 DUF3255: Protein of u 39.4 24 0.00051 24.2 1.8 29 66-94 77-105 (123)
7 PRK09294 acyltransferase PapA5 39.2 45 0.00098 27.4 3.9 37 55-91 34-70 (416)
8 PRK02801 primosomal replicatio 35.0 37 0.0008 22.8 2.3 22 73-98 6-27 (101)
9 COG0771 MurD UDP-N-acetylmuram 31.2 52 0.0011 28.3 3.0 31 61-99 295-325 (448)
10 KOG1209 1-Acyl dihydroxyaceton 29.5 34 0.00073 27.1 1.5 36 76-111 72-107 (289)
11 PRK15322 invasion protein OrgB 25.6 86 0.0019 24.2 3.1 67 27-98 94-162 (210)
12 PF00380 Ribosomal_S9: Ribosom 22.7 56 0.0012 22.9 1.5 18 56-73 66-83 (121)
13 COG0736 AcpS Phosphopantethein 22.2 1.7E+02 0.0038 20.6 3.9 24 55-80 48-73 (127)
14 PRK00070 acpS 4'-phosphopantet 20.9 1.3E+02 0.0029 20.3 3.1 12 59-70 54-65 (126)
15 PF05132 RNA_pol_Rpc4: RNA pol 20.8 1E+02 0.0022 21.5 2.5 24 76-101 70-93 (131)
16 TIGR00516 acpS holo-[acyl-carr 20.4 1.8E+02 0.0039 19.9 3.7 36 59-99 53-88 (121)
17 PF03007 WES_acyltransf: Wax e 20.3 3.5E+02 0.0076 20.9 5.8 44 39-82 18-63 (263)
18 KOG4745 Metalloproteinase inhi 20.2 64 0.0014 23.3 1.4 35 70-111 33-68 (141)
No 1
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=100.00 E-value=5.1e-34 Score=238.22 Aligned_cols=135 Identities=21% Similarity=0.293 Sum_probs=116.3
Q ss_pred cceEEEeeEEEeCCCCCCCCceeeCCccccccccccceEEEEecCCCCC--CchHHHHHHHHHhhchhcccCCceeeeCC
Q 037425 5 LLIHSIRLSSVGPGKATGSDVVHELSGMDLAMKLHYLKGFYIFRSHAVQ--GLSVKLIKESTFYLFNNYYWTCARLRRSD 82 (141)
Q Consensus 5 ~~V~i~~~~~V~P~~~~~~~~~~~LS~lD~~~~~~~~~~v~fy~~~~~~--~~~~~~Lk~sLa~~L~~fyplAGRl~~~~ 82 (141)
|.|+|.++++|+|+.|||. +.++||+||+....+|++.||||+.+... ...+++||+|||+||++||||||||++.+
T Consensus 1 ~~v~~~~~~~v~Ps~ptp~-~~~~LS~lD~~~~~~~v~~v~fy~~~~~~~~~~~~~~Lk~sLs~~L~~fyplAGRl~~~~ 79 (447)
T PLN03157 1 MVVILKASYTVKPAKPTWT-GRRSLSEWDQVGTITHVPTIYFYSPPWNTSSGSIIEILKDSLSRALVPFYPLAGRLRWIG 79 (447)
T ss_pred CeEEEeccEEECCCCCCCC-CccCCChhhhccccccCCEEEEEeCCCccccccHHHHHHHHHHHHHhhccccCEEEEEcC
Confidence 3499999999999999987 68999999997667899999999764321 24589999999999999999999999998
Q ss_pred CCCeEEEeCCCCcEEEEEEcCCChHHHhcCCCCCCccccccccCCCCCCCCCCCceeeC
Q 037425 83 SGRPYLKCNDCGARFVEAQCDKTVDELLEMGDYSSFPNLLVYHQPIGPDLAFSPPIYLQ 141 (141)
Q Consensus 83 ~g~~~i~cn~~Gv~fv~A~~~~~l~~l~~~~~~~~~~~~l~p~~~~~~~~~~~pll~vQ 141 (141)
+|+++|+|||+||+|+||+++++|+|+++..+.+.+++ |+|..+...+....|++.+|
T Consensus 80 ~g~~~i~c~~~Gv~fveA~~~~~l~~~~~~~~~~~~~~-l~P~~~~~~~~~~~Pll~vQ 137 (447)
T PLN03157 80 GGRLELECNAMGVLLIEAESEAKLDDFGDFSPTPEFEY-LIPSVDYTKPIHELPLLLVQ 137 (447)
T ss_pred CCcEEEEECCCCeEEEEEEeCCcHHHhhccCCCHHHHh-hcCCCCcccccccCceEEEE
Confidence 89999999999999999999999999987666667888 88865443444567999998
No 2
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=99.97 E-value=5.3e-32 Score=224.94 Aligned_cols=135 Identities=22% Similarity=0.315 Sum_probs=115.2
Q ss_pred cceEEEeeEEEeCCCCCCCCceeeCCccccccccccceEEEEecCCCCC-CchHHHHHHHHHhhchhcccCCceeeeCCC
Q 037425 5 LLIHSIRLSSVGPGKATGSDVVHELSGMDLAMKLHYLKGFYIFRSHAVQ-GLSVKLIKESTFYLFNNYYWTCARLRRSDS 83 (141)
Q Consensus 5 ~~V~i~~~~~V~P~~~~~~~~~~~LS~lD~~~~~~~~~~v~fy~~~~~~-~~~~~~Lk~sLa~~L~~fyplAGRl~~~~~ 83 (141)
|+|+|+++++|+|+.|||+ ++++||+||+.....|++.+|||+.+... .+..++||+|||++|++||||||||+.+++
T Consensus 1 ~~v~~~~~~~V~Ps~ptp~-~~~~LS~lD~~~~~~~~~~v~fY~~~~~~~~~~~~~Lk~sLs~~L~~~yplaGRl~~~~~ 79 (431)
T PLN02663 1 MIINVRESTMVRPAEETPR-RGLWNSNVDLVVPRFHTPSVYFYRPTGASNFFDPQVMKEALSKALVPFYPMAGRLRRDED 79 (431)
T ss_pred CeEEEcCcEEECCCCCCCC-CcccCChhhcccccccccEEEEEcCCCCCCccCHHHHHHHHHHHHhhccccceeeeECCC
Confidence 5699999999999999987 79999999997778899999999864322 246799999999999999999999999989
Q ss_pred CCeEEEeCCCCcEEEEEEcCCChHHHhcCCCCCCccccccccCCCCCCCCCCCceeeC
Q 037425 84 GRPYLKCNDCGARFVEAQCDKTVDELLEMGDYSSFPNLLVYHQPIGPDLAFSPPIYLQ 141 (141)
Q Consensus 84 g~~~i~cn~~Gv~fv~A~~~~~l~~l~~~~~~~~~~~~l~p~~~~~~~~~~~pll~vQ 141 (141)
|+++|+||++||.|+||+++++++|+.+..+...+++ |+|..+...+..+.|+|.+|
T Consensus 80 g~~~i~c~~~Gv~fv~A~~~~~l~~~~~~~~~~~~~~-l~P~~~~~~~~~~~P~l~vQ 136 (431)
T PLN02663 80 GRIEIDCNAEGVLFVEADTPSVIDDFGDFAPTLELRQ-LIPTVDYSGGISSYPLLVLQ 136 (431)
T ss_pred CCEEEEECCCCceEEEEecCCCHHHhhccCCCHHHHh-hcCCCCCccccccCceEEEE
Confidence 9999999999999999999999999987655555667 88764332334468999998
No 3
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=99.97 E-value=4.1e-31 Score=217.97 Aligned_cols=134 Identities=30% Similarity=0.408 Sum_probs=103.8
Q ss_pred cceEEEeeEEEeCCCCCCCCceeeCCccc-cccccccceEEEEecCCCCCC--chHHHHHHHHHhhchhcccCCceeeeC
Q 037425 5 LLIHSIRLSSVGPGKATGSDVVHELSGMD-LAMKLHYLKGFYIFRSHAVQG--LSVKLIKESTFYLFNNYYWTCARLRRS 81 (141)
Q Consensus 5 ~~V~i~~~~~V~P~~~~~~~~~~~LS~lD-~~~~~~~~~~v~fy~~~~~~~--~~~~~Lk~sLa~~L~~fyplAGRl~~~ 81 (141)
|+|+|.++++|+|+.++|+ .+++||+|| +.....|++.+|||+.+.... ..++.||+|||++|++|||||||| ++
T Consensus 1 m~v~v~~~~~V~Ps~~tp~-~~~~LS~lD~~~~~~~~~~~~~~y~~~~~~~~~~~~~~Lk~sLs~~L~~~~~lAGrl-~~ 78 (432)
T PF02458_consen 1 MKVTVLSRSLVKPSSPTPP-HTLPLSNLDLQLMPPYYVPVLLFYRPPSSSDDSDIVDNLKESLSKTLVHYYPLAGRL-RD 78 (432)
T ss_dssp ---EEEEECEEE-STTS-T-CEEE--HHHHHCCGCSEEEEEEEEE--SSCHHHHHHHHHHHHHHHHHTTSGGGGSEE-ES
T ss_pred CCCEEecCEEEECCCCCCC-CcccCchhhcCcccccEEEEEEEecCccccccchHHHHHHHHHHHhHhhCcccCcEE-cc
Confidence 6799999999999999988 599999999 555567899999999765432 248999999999999999999999 77
Q ss_pred CCCCeEEEeCCCCcEEEEEEcCCChHHHhcCCCCC-CccccccccCCCCCCCCCCCceeeC
Q 037425 82 DSGRPYLKCNDCGARFVEAQCDKTVDELLEMGDYS-SFPNLLVYHQPIGPDLAFSPPIYLQ 141 (141)
Q Consensus 82 ~~g~~~i~cn~~Gv~fv~A~~~~~l~~l~~~~~~~-~~~~~l~p~~~~~~~~~~~pll~vQ 141 (141)
++|+++|+|||+||+|++|+++.+++|+....+.. .... |+|..+...+....|++.||
T Consensus 79 ~~~~~~i~c~d~Gv~f~~a~~~~~l~~~~~~~~~~~~~~~-l~p~~~~~~~~~~~Pll~vQ 138 (432)
T PF02458_consen 79 PDGRLEIDCNDDGVEFVEAEADGTLDDLLDLEPPSEFLRD-LVPQLPVSSEGEDAPLLAVQ 138 (432)
T ss_dssp SCTTTEEEECTTTEEEEEEEESS-HHHHCSSSCCGGGGGG-GSSS-SSSEEETTEBSEEEE
T ss_pred cccceEEEEecCCCEEEEEecccceeeccccccchHHHHH-HhhhcccCCcccccceeEee
Confidence 79999999999999999999999999998776332 3454 88865554444568999998
No 4
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=99.96 E-value=1.9e-29 Score=210.26 Aligned_cols=134 Identities=25% Similarity=0.381 Sum_probs=113.2
Q ss_pred cceEEEeeEEEeCCCCCCCCceeeCCccccccccccceEEEEecCCCC--CCchHHHHHHHHHhhchhcccCCceeeeCC
Q 037425 5 LLIHSIRLSSVGPGKATGSDVVHELSGMDLAMKLHYLKGFYIFRSHAV--QGLSVKLIKESTFYLFNNYYWTCARLRRSD 82 (141)
Q Consensus 5 ~~V~i~~~~~V~P~~~~~~~~~~~LS~lD~~~~~~~~~~v~fy~~~~~--~~~~~~~Lk~sLa~~L~~fyplAGRl~~~~ 82 (141)
++|++.++++|+|+.|||. ++++||++|+.+ ..|++.+|||+.+.. ....+++||+||+++|++||||||||+.++
T Consensus 12 ~~v~~~~~~~V~Ps~ptp~-~~~~LS~lD~~~-~~~~~~~~fy~~~~~~~~~~~~~~Lk~sLs~~L~~~~plAGRL~~~~ 89 (436)
T PLN02481 12 LVVKQKEPELVPPAEETPK-GLYFLSNLDQNI-AVIVRTVYCFKSEERGSNEDPVDVIKKALSKVLVHYYPLAGRLTISS 89 (436)
T ss_pred eEEEEcCCEEeCCCCCCCC-CceecCccccCc-ceeeeEEEEECCCCcccccCHHHHHHHHHHHHhccccCCCCeeeeCC
Confidence 5799999999999999987 799999999975 468999999987532 235799999999999999999999999998
Q ss_pred CCCeEEEeCCCCcEEEEEEcCCChHHHhcC-CC-CCCccccccccCCCCCCCCCCCceeeC
Q 037425 83 SGRPYLKCNDCGARFVEAQCDKTVDELLEM-GD-YSSFPNLLVYHQPIGPDLAFSPPIYLQ 141 (141)
Q Consensus 83 ~g~~~i~cn~~Gv~fv~A~~~~~l~~l~~~-~~-~~~~~~~l~p~~~~~~~~~~~pll~vQ 141 (141)
+|+++|+||++||.|+||+++++++|+.+. .+ ...+++ |+|..+...+....|++++|
T Consensus 90 ~g~~~i~c~~~Gv~fvea~~d~~l~~l~~~~~p~~~~~~~-l~~~~~~~~~~~~~Pll~vQ 149 (436)
T PLN02481 90 EGKLIVDCTGEGVVFVEAEANCSIEEIGDITKPDPETLGK-LVYDVPGAKNILEIPPLTAQ 149 (436)
T ss_pred CCcEEEEEcCCCeEEEEEEecCcHHHhccccCCCCHHHHH-hCCCCCCcccccccceeeec
Confidence 999999999999999999999999999764 33 335676 77755443344457999998
No 5
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=99.96 E-value=1.7e-29 Score=211.17 Aligned_cols=131 Identities=15% Similarity=0.214 Sum_probs=107.2
Q ss_pred cceEEEeeEEEeCCCCCCCC-ceeeCCccccccccccceEEEEecCCCCC----CchHHHHHHHHHhhchhcccCCceee
Q 037425 5 LLIHSIRLSSVGPGKATGSD-VVHELSGMDLAMKLHYLKGFYIFRSHAVQ----GLSVKLIKESTFYLFNNYYWTCARLR 79 (141)
Q Consensus 5 ~~V~i~~~~~V~P~~~~~~~-~~~~LS~lD~~~~~~~~~~v~fy~~~~~~----~~~~~~Lk~sLa~~L~~fyplAGRl~ 79 (141)
|+|+++++++|+|+.||+.+ +.++||+||+....+|++.+|||+.+... ...+++||+|||++|++||||||||+
T Consensus 1 ~~v~~~s~~~V~Ps~ptp~~~~~~~LS~lD~~~~~~~~~~~~fY~~~~~~~~~~~~~~~~Lk~sLs~~L~~fyplAGRl~ 80 (444)
T PLN00140 1 MEVSIISRELIKPSSPSIHHLKPFKLSLLDQLTPTTYIPMIFFYPTNNNQNFKGLQISIQLKRSLSETLSTFYPFSGRVK 80 (444)
T ss_pred CeeEEeccceeccCCCCccccccCCCChHHhcccccccceEEEeeCCCcccccchhHHHHHHHHHHHHHhhhhccCcccc
Confidence 57999999999999999864 58899999997778899999999864321 13679999999999999999999998
Q ss_pred eCCCCCeEEEeCCCCcEEEEEEcCCChHHHhcCCCCC-CccccccccCCCC--CCCCCCCceeeC
Q 037425 80 RSDSGRPYLKCNDCGARFVEAQCDKTVDELLEMGDYS-SFPNLLVYHQPIG--PDLAFSPPIYLQ 141 (141)
Q Consensus 80 ~~~~g~~~i~cn~~Gv~fv~A~~~~~l~~l~~~~~~~-~~~~~l~p~~~~~--~~~~~~pll~vQ 141 (141)
. +++|+|||+||.|+||+++++++|++. .+.. .+.+ |+|..+.. .+....|++.+|
T Consensus 81 ~----~~~i~cn~~Gv~fveA~~~~~l~d~l~-~~~~~~~~~-l~p~~~~~~~~~~~~~Pll~vQ 139 (444)
T PLN00140 81 D----NLIIDNYEEGVPFFETRVKGSLSDFLK-HPQLELLNK-FLPCQPFSYESDPEAIPQVAIQ 139 (444)
T ss_pred C----CceeEccCCCceEEEEEecCcHHHhcC-CCCHHHHHh-hCCCCcccccCCccCCceEEEE
Confidence 5 489999999999999999999999965 3333 4555 88754321 133457999998
No 6
>PF11631 DUF3255: Protein of unknown function (DUF3255); InterPro: IPR021664 Members in this family of proteins are annotated as YxeF however no function is currently known. The family appears to be restricted to Bacillus. ; PDB: 2JOZ_A.
Probab=39.37 E-value=24 Score=24.19 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=21.0
Q ss_pred hhchhcccCCceeeeCCCCCeEEEeCCCC
Q 037425 66 YLFNNYYWTCARLRRSDSGRPYLKCNDCG 94 (141)
Q Consensus 66 ~~L~~fyplAGRl~~~~~g~~~i~cn~~G 94 (141)
+-|.+|||+-..|.+.++|-+-..-|++-
T Consensus 77 qylg~~~plkstlkrgen~tliw~~~g~t 105 (123)
T PF11631_consen 77 QYLGPYYPLKSTLKRGENGTLIWEQNGQT 105 (123)
T ss_dssp EEESTT-S-EEEEEE-STT-EEEEETTEE
T ss_pred EEcCCCcchhhHhhcCCCCcEEEEecCce
Confidence 46889999999999999998888888764
No 7
>PRK09294 acyltransferase PapA5; Provisional
Probab=39.21 E-value=45 Score=27.40 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=30.6
Q ss_pred chHHHHHHHHHhhchhcccCCceeeeCCCCCeEEEeC
Q 037425 55 LSVKLIKESTFYLFNNYYWTCARLRRSDSGRPYLKCN 91 (141)
Q Consensus 55 ~~~~~Lk~sLa~~L~~fyplAGRl~~~~~g~~~i~cn 91 (141)
.+.+.|++||.+++..|+-|..|+..+++|.+.+...
T Consensus 34 lD~~~L~~Al~~l~~rhp~Lr~~~~~~~~~~~~~~~~ 70 (416)
T PRK09294 34 LDIDALSDAFDALLRAHPVLAAHLEQDSDGGWELVAD 70 (416)
T ss_pred CCHHHHHHHHHHHHHhCHHhhEEEEECCCCceEEeeC
Confidence 4699999999999999999999997666666555544
No 8
>PRK02801 primosomal replication protein N; Provisional
Probab=35.04 E-value=37 Score=22.75 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=14.2
Q ss_pred cCCceeeeCCCCCeEEEeCCCCcEEE
Q 037425 73 WTCARLRRSDSGRPYLKCNDCGARFV 98 (141)
Q Consensus 73 plAGRl~~~~~g~~~i~cn~~Gv~fv 98 (141)
-|.|||..+ +++.++..|...+
T Consensus 6 ~L~Grl~~d----pelr~Tp~G~~v~ 27 (101)
T PRK02801 6 VLSGTVCRT----PKRKVSPSGIPHC 27 (101)
T ss_pred EEEEEECcC----cceEECCCCCeEE
Confidence 367999876 5566666565443
No 9
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=31.21 E-value=52 Score=28.27 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=24.0
Q ss_pred HHHHHhhchhcccCCceeeeCCCCCeEEEeCCCCcEEEE
Q 037425 61 KESTFYLFNNYYWTCARLRRSDSGRPYLKCNDCGARFVE 99 (141)
Q Consensus 61 k~sLa~~L~~fyplAGRl~~~~~g~~~i~cn~~Gv~fv~ 99 (141)
.+++.++|..|.++++|+. ..++.+|+.|+-
T Consensus 295 ~e~i~~~L~~F~gl~HR~e--------~v~~~~gv~f~N 325 (448)
T COG0771 295 PEAILEALSSFTGLPHRLE--------FVGEKDGVLFIN 325 (448)
T ss_pred HHHHHHHHHhCCCCCcceE--------EEEecCCEEEec
Confidence 5668999999999988875 456667777765
No 10
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.54 E-value=34 Score=27.11 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=28.7
Q ss_pred ceeeeCCCCCeEEEeCCCCcEEEEEEcCCChHHHhc
Q 037425 76 ARLRRSDSGRPYLKCNDCGARFVEAQCDKTVDELLE 111 (141)
Q Consensus 76 GRl~~~~~g~~~i~cn~~Gv~fv~A~~~~~l~~l~~ 111 (141)
|-++..++|++.+-.|++|+.-+--..|.++++...
T Consensus 72 ~evr~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~ 107 (289)
T KOG1209|consen 72 GEVRANPDGKLDLLYNNAGQSCTFPALDATIAAVEQ 107 (289)
T ss_pred HHHhhCCCCceEEEEcCCCCCcccccccCCHHHHHh
Confidence 345556899999999999998887777888877643
No 11
>PRK15322 invasion protein OrgB; Provisional
Probab=25.56 E-value=86 Score=24.20 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=40.8
Q ss_pred eeCCccccccc--cccceEEEEecCCCCCCchHHHHHHHHHhhchhcccCCceeeeCCCCCeEEEeCCCCcEEE
Q 037425 27 HELSGMDLAMK--LHYLKGFYIFRSHAVQGLSVKLIKESTFYLFNNYYWTCARLRRSDSGRPYLKCNDCGARFV 98 (141)
Q Consensus 27 ~~LS~lD~~~~--~~~~~~v~fy~~~~~~~~~~~~Lk~sLa~~L~~fyplAGRl~~~~~g~~~i~cn~~Gv~fv 98 (141)
+.|.++|.+.. ..+..-+.+|=+.. .+...-.|...|+.+++..=.|...++.++.+.|+++=|+|.
T Consensus 94 ~LL~~le~Wl~~l~~~~~pL~l~lP~~-----ak~~~~~L~~~l~e~w~~~~~i~yhd~~rFV~~~g~qIaEFs 162 (210)
T PRK15322 94 TLLTVLDEWLRDFDKPEGQLFLTLPVN-----AKKDHQKLMVLLMENWPGTFNLKYHQEQRFIMSCGDQIAEFS 162 (210)
T ss_pred HHHHHHHHHHHhCccccCceeEecChh-----hhhhHHHHHHHHHHhcCCCeEEEEcCCCceEEEeCCchhccC
Confidence 55667776543 22345555553322 334444455555656654445677777899999999988884
No 12
>PF00380 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: IPR000754 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S9 is one of the proteins from the small ribosomal subunit. It belongs to the S9P family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial; algal chloroplast; cyanelle and archaeal S9 proteins; and mammalian; plant; and yeast mitochondrial ribosomal S9 proteins. These proteins adopt a beta-alpha-beta fold similar to that found in numerous RNA/DNA-binding proteins, as well as in kinases from the GHMP kinase family [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V46_I 3T1H_I 3MR8_I 3F1G_I 3D5C_I 3D5A_I 2WDG_I 3MS0_I 2WDM_I 2J02_I ....
Probab=22.72 E-value=56 Score=22.88 Aligned_cols=18 Identities=6% Similarity=-0.064 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhhchhccc
Q 037425 56 SVKLIKESTFYLFNNYYW 73 (141)
Q Consensus 56 ~~~~Lk~sLa~~L~~fyp 73 (141)
...+++.++|++|+.|+|
T Consensus 66 Qa~Air~aiaraL~~~~~ 83 (121)
T PF00380_consen 66 QAGAIRLAIARALVKFNP 83 (121)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred ehHHHHHHHHHHHHHHhH
Confidence 588999999999999999
No 13
>COG0736 AcpS Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism]
Probab=22.16 E-value=1.7e+02 Score=20.64 Aligned_cols=24 Identities=8% Similarity=-0.122 Sum_probs=16.3
Q ss_pred chHHH--HHHHHHhhchhcccCCceeee
Q 037425 55 LSVKL--IKESTFYLFNNYYWTCARLRR 80 (141)
Q Consensus 55 ~~~~~--Lk~sLa~~L~~fyplAGRl~~ 80 (141)
+...+ .|+|+++||.. .+.+.+.+
T Consensus 48 ~lAgrfAaKEA~~KAlgt--gi~~~~~~ 73 (127)
T COG0736 48 FLAGRFAAKEAVSKALGT--GIGKGVSF 73 (127)
T ss_pred HHHHHHHHHHHHHHHhcc--Ccccceee
Confidence 44443 79999999998 44444544
No 14
>PRK00070 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=20.87 E-value=1.3e+02 Score=20.31 Aligned_cols=12 Identities=17% Similarity=0.016 Sum_probs=10.1
Q ss_pred HHHHHHHhhchh
Q 037425 59 LIKESTFYLFNN 70 (141)
Q Consensus 59 ~Lk~sLa~~L~~ 70 (141)
..|+++.++|..
T Consensus 54 aaKEA~~Kalg~ 65 (126)
T PRK00070 54 AAKEAFSKALGT 65 (126)
T ss_pred HHHHHHHHHhcc
Confidence 479999999965
No 15
>PF05132 RNA_pol_Rpc4: RNA polymerase III RPC4; InterPro: IPR007811 This family comprises a specific subunit for Pol III, the tRNA specific polymerase.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006383 transcription from RNA polymerase III promoter, 0005666 DNA-directed RNA polymerase III complex
Probab=20.83 E-value=1e+02 Score=21.54 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=16.4
Q ss_pred ceeeeCCCCCeEEEeCCCCcEEEEEE
Q 037425 76 ARLRRSDSGRPYLKCNDCGARFVEAQ 101 (141)
Q Consensus 76 GRl~~~~~g~~~i~cn~~Gv~fv~A~ 101 (141)
|+|+...+|+.+++.+ |+.|-...
T Consensus 70 GkL~V~kSGkv~l~iG--~~~~dV~~ 93 (131)
T PF05132_consen 70 GKLRVHKSGKVTLKIG--GVVFDVSP 93 (131)
T ss_pred EEEEEEeCCcEEEEEC--CEEEEecC
Confidence 4445567899999998 66665443
No 16
>TIGR00516 acpS holo-[acyl-carrier-protein] synthase. Formerly dpj. This enzyme adds the prosthetic group, phosphopantethiene, to the acyl carrier protein (ACP) apo-enzyme to generate the holo-enzyme. Related phosphopantethiene--protein transferases also exist. There is an orthologous domain in eukaryotic proteins.
Probab=20.37 E-value=1.8e+02 Score=19.94 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=24.5
Q ss_pred HHHHHHHhhchhcccCCceeeeCCCCCeEEEeCCCCcEEEE
Q 037425 59 LIKESTFYLFNNYYWTCARLRRSDSGRPYLKCNDCGARFVE 99 (141)
Q Consensus 59 ~Lk~sLa~~L~~fyplAGRl~~~~~g~~~i~cn~~Gv~fv~ 99 (141)
..|+|+.+||.. .+...+.+. .++|..+..|.+.+.
T Consensus 53 AaKEA~~KAlg~--g~~~~~~~~---diei~~~~~G~P~v~ 88 (121)
T TIGR00516 53 AAKEAFSKAFGT--GIGRQLSFQ---DIEIRKDQNGKPLIT 88 (121)
T ss_pred HHHHHHHHHhcc--ccCCCccce---EEEEEECCCcCeEEE
Confidence 379999999984 223334333 477777777888776
No 17
>PF03007 WES_acyltransf: Wax ester synthase-like Acyl-CoA acyltransferase domain; InterPro: IPR004255 This entry represents the N terminus (approximately 170 residues) of a number of hypothetical plant proteins. O-acyltransferase WSD1 is a bifunctional wax ester synthase/diacylglycerol acyltransferase, which is involved in cuticular wax biosynthesis [].; GO: 0004144 diacylglycerol O-acyltransferase activity
Probab=20.34 E-value=3.5e+02 Score=20.92 Aligned_cols=44 Identities=14% Similarity=0.027 Sum_probs=34.7
Q ss_pred ccceEEEEecCCCCC--CchHHHHHHHHHhhchhcccCCceeeeCC
Q 037425 39 HYLKGFYIFRSHAVQ--GLSVKLIKESTFYLFNNYYWTCARLRRSD 82 (141)
Q Consensus 39 ~~~~~v~fy~~~~~~--~~~~~~Lk~sLa~~L~~fyplAGRl~~~~ 82 (141)
.++-.+.+|+.+... ....+.|++.+...+..++.|.-|++...
T Consensus 18 mhv~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~p~fr~rv~~~~ 63 (263)
T PF03007_consen 18 MHVGALAIFDPPTDGAPPLDVERLRARLEARLARHPRFRQRVVRVP 63 (263)
T ss_pred ceEEEEEEEEcCCCCCCcchHHHHHHHHHHhhccCCccccceecCC
Confidence 367788899876322 23689999999999999999999998753
No 18
>KOG4745 consensus Metalloproteinase inhibitor TIMP and related proteins [General function prediction only]
Probab=20.17 E-value=64 Score=23.31 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=22.1
Q ss_pred hcccCCceeeeCCCCCeEE-EeCCCCcEEEEEEcCCChHHHhc
Q 037425 70 NYYWTCARLRRSDSGRPYL-KCNDCGARFVEAQCDKTVDELLE 111 (141)
Q Consensus 70 ~fyplAGRl~~~~~g~~~i-~cn~~Gv~fv~A~~~~~l~~l~~ 111 (141)
.=|-+|||+. .||.+.| -|| |++---..++.++..
T Consensus 33 keYLlaGrv~--~dg~l~itlC~-----~v~pwd~ls~~qre~ 68 (141)
T KOG4745|consen 33 KEYLLAGRVE--GDGKLLITLCD-----FVVPWDRLSLTQREG 68 (141)
T ss_pred EEEEEeeeec--CCCcEEEEeec-----eEeechhcchHHhcc
Confidence 4599999994 4678888 675 444333455555543
Done!