Query 037425
Match_columns 141
No_of_seqs 115 out of 1027
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 20:49:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037425.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037425hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f7la_ d.150.1.2 (A:) Holo-(a 38.8 35 0.0025 20.8 5.4 34 59-94 55-95 (118)
2 d1q9ja1 c.43.1.2 (A:1-175) Pol 35.5 36 0.0026 21.3 5.2 60 28-91 9-70 (175)
3 d2joza1 b.60.1.1 (A:2-127) Hyp 33.0 12 0.00089 23.0 2.2 30 66-95 77-106 (126)
4 d1zq1c3 d.128.1.5 (C:5-276,C:4 29.8 20 0.0014 26.4 3.3 21 84-104 170-190 (321)
5 d2d6fc3 d.128.1.5 (C:1-270,C:3 24.0 27 0.002 25.6 3.2 20 85-104 170-189 (319)
6 d1bvsa3 b.40.4.2 (A:1-63) DNA 23.5 17 0.0012 19.9 1.5 22 73-94 4-25 (63)
7 d2f2ab2 d.128.1.5 (B:4-293) As 22.4 33 0.0024 24.8 3.3 18 86-103 134-151 (290)
8 d2vqei1 d.14.1.1 (I:2-128) Rib 20.8 20 0.0015 22.6 1.6 18 56-73 72-89 (127)
9 d1ftha_ d.150.1.2 (A:) Holo-(a 19.3 59 0.0043 19.6 3.7 35 59-99 55-89 (117)
10 d1zxoa1 c.55.1.5 (A:3-106) Hyp 18.5 24 0.0017 21.5 1.5 44 32-80 47-90 (104)
No 1
>d1f7la_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Bacillus subtilis [TaxId: 1423]}
Probab=38.81 E-value=35 Score=20.77 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=19.4
Q ss_pred HHHHHHHhhchhcccCCcee-------eeCCCCCeEEEeCCCC
Q 037425 59 LIKESTFYLFNNYYWTCARL-------RRSDSGRPYLKCNDCG 94 (141)
Q Consensus 59 ~Lk~sLa~~L~~fyplAGRl-------~~~~~g~~~i~cn~~G 94 (141)
..|+|+.++|.. .+...+ ..+++|++.+.+++.|
T Consensus 55 AaKEA~~Kalg~--g~~~~~~~~dieI~~~~~G~P~~~~~~~~ 95 (118)
T d1f7la_ 55 AAKEAFSKAFGT--GIGRQLSFQDIEIRKDQNGKPYIICTKLS 95 (118)
T ss_dssp HHHHHHHHHHTS--CSBTTBCGGGCEEEECTTSCEEEEETTTE
T ss_pred HHHHHHHHhccc--CCCCCCcccEEEEEECCCCCcEEEecCCc
Confidence 479999999964 122222 2334566666665443
No 2
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=35.48 E-value=36 Score=21.32 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=40.5
Q ss_pred eCCccccccccc--cceEEEEecCCCCCCchHHHHHHHHHhhchhcccCCceeeeCCCCCeEEEeC
Q 037425 28 ELSGMDLAMKLH--YLKGFYIFRSHAVQGLSVKLIKESTFYLFNNYYWTCARLRRSDSGRPYLKCN 91 (141)
Q Consensus 28 ~LS~lD~~~~~~--~~~~v~fy~~~~~~~~~~~~Lk~sLa~~L~~fyplAGRl~~~~~g~~~i~cn 91 (141)
.|+..+...... ++...+-.+.+ ...+.|++++..++..++-|-.+++.+++|.+.....
T Consensus 9 ~l~~~e~~~~~~~~~~~~~~~l~g~----ld~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~~~~~~ 70 (175)
T d1q9ja1 9 KLSHSEEVFAQYEVFTSMTIQLRGV----IDVDALSDAFDALLETHPVLASHLEQSSDGGWNLVAD 70 (175)
T ss_dssp ECCHHHHHHHHTTCEEEEEEEEESC----CCHHHHHHHHHHHHHHCGGGSEEEEECTTSSEEEEEC
T ss_pred HhCHHhhhcccCceEEEEEEEEcCC----CCHHHHHHHHHHHHHhchhheEEEEEeCCeeEEEEEC
Confidence 477777754322 33322222322 3599999999999999999999999887666554433
No 3
>d2joza1 b.60.1.1 (A:2-127) Hypothetical protein YxeF {Bacillus subtilis [TaxId: 1423]}
Probab=33.01 E-value=12 Score=23.05 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=25.6
Q ss_pred hhchhcccCCceeeeCCCCCeEEEeCCCCc
Q 037425 66 YLFNNYYWTCARLRRSDSGRPYLKCNDCGA 95 (141)
Q Consensus 66 ~~L~~fyplAGRl~~~~~g~~~i~cn~~Gv 95 (141)
+-|.+|||+-..|.+.++|.+...-|++--
T Consensus 77 ~ylg~~~p~kstlkrg~n~tliw~~~g~~k 106 (126)
T d2joza1 77 QYLGPYYPLKSTLKRGENGTLIWEQNGQRK 106 (126)
T ss_dssp EEESTTCSCEEEEEECSTTCEEEEETTEEE
T ss_pred EEcCCCcchhhHHhCCCCCcEEEEecCcee
Confidence 468899999999999999998888887643
No 4
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]}
Probab=29.75 E-value=20 Score=26.41 Aligned_cols=21 Identities=10% Similarity=0.165 Sum_probs=16.7
Q ss_pred CCeEEEeCCCCcEEEEEEcCC
Q 037425 84 GRPYLKCNDCGARFVEAQCDK 104 (141)
Q Consensus 84 g~~~i~cn~~Gv~fv~A~~~~ 104 (141)
+...+|.|-.|++++|=.+.-
T Consensus 170 ~~~lvD~NRaGvPLiEIVTeP 190 (321)
T d1zq1c3 170 KEVIYRLDRLGIPLIEISTTP 190 (321)
T ss_dssp TEEEEESTTTTCEEEEEECCT
T ss_pred CceEEeecccCcceEEEeccc
Confidence 345679999999999988753
No 5
>d2d6fc3 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.97 E-value=27 Score=25.57 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=16.0
Q ss_pred CeEEEeCCCCcEEEEEEcCC
Q 037425 85 RPYLKCNDCGARFVEAQCDK 104 (141)
Q Consensus 85 ~~~i~cn~~Gv~fv~A~~~~ 104 (141)
...|+.|-.||+++|=.++-
T Consensus 170 ~~~vD~NRaGvPLiEIVTeP 189 (319)
T d2d6fc3 170 GVVFRLDRLGIPLVEITTDP 189 (319)
T ss_dssp EEEEETTSTTCEEEEEECCS
T ss_pred ceEecccccCceeEEEEeec
Confidence 34579999999999988753
No 6
>d1bvsa3 b.40.4.2 (A:1-63) DNA helicase RuvA subunit, N-terminal domain {Mycobacterium leprae [TaxId: 1769]}
Probab=23.50 E-value=17 Score=19.93 Aligned_cols=22 Identities=5% Similarity=0.028 Sum_probs=17.9
Q ss_pred cCCceeeeCCCCCeEEEeCCCC
Q 037425 73 WTCARLRRSDSGRPYLKCNDCG 94 (141)
Q Consensus 73 plAGRl~~~~~g~~~i~cn~~G 94 (141)
-+.|++...+.+.+.|+||+=|
T Consensus 4 ~i~G~i~~~~~~~ivi~v~GvG 25 (63)
T d1bvsa3 4 SVRGEVLEVALDHAVIEAAGIG 25 (63)
T ss_dssp EECEEEEEECSSCEEEEETTEE
T ss_pred EEEEEEEEECCCEEEEEECCEE
Confidence 4679998877889999998655
No 7
>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=22.36 E-value=33 Score=24.77 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=15.1
Q ss_pred eEEEeCCCCcEEEEEEcC
Q 037425 86 PYLKCNDCGARFVEAQCD 103 (141)
Q Consensus 86 ~~i~cn~~Gv~fv~A~~~ 103 (141)
-.|+.|-.|++++|=.++
T Consensus 134 slvD~NRaGvPLiEIVTe 151 (290)
T d2f2ab2 134 SLVDLNRQGTPLIEIVSE 151 (290)
T ss_dssp EEEECSSTTCEEEEEEEC
T ss_pred cEEeeccCCCceeeeecc
Confidence 447899999999998775
No 8
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]}
Probab=20.80 E-value=20 Score=22.62 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhhchhccc
Q 037425 56 SVKLIKESTFYLFNNYYW 73 (141)
Q Consensus 56 ~~~~Lk~sLa~~L~~fyp 73 (141)
..++++.++|++|+.|.|
T Consensus 72 Qa~Air~aIaRaL~~~~~ 89 (127)
T d2vqei1 72 QIDAIKLGIARALVQYNP 89 (127)
T ss_dssp HHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHCH
Confidence 688999999999999976
No 9
>d1ftha_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Streptococcus pneumoniae [TaxId: 1313]}
Probab=19.30 E-value=59 Score=19.63 Aligned_cols=35 Identities=17% Similarity=0.047 Sum_probs=22.2
Q ss_pred HHHHHHHhhchhcccCCceeeeCCCCCeEEEeCCCCcEEEE
Q 037425 59 LIKESTFYLFNNYYWTCARLRRSDSGRPYLKCNDCGARFVE 99 (141)
Q Consensus 59 ~Lk~sLa~~L~~fyplAGRl~~~~~g~~~i~cn~~Gv~fv~ 99 (141)
..|+|+.+||..- +.| +.+. .++|..+..|.+++.
T Consensus 55 AaKEA~~KAlg~g--~~~-~~~~---dIeI~~~~~G~P~~~ 89 (117)
T d1ftha_ 55 SAKEAFSKAMGTG--ISK-LGFQ---DLEVLNNERGAPYFS 89 (117)
T ss_dssp HHHHHHHHHHTSC--SSS-SCGG---GCEEEECTTSCEEEE
T ss_pred HHHHHHHHHhhcC--ccc-cccc---eEEEEECCCCCEEEE
Confidence 4799999999742 233 4333 466666666776553
No 10
>d1zxoa1 c.55.1.5 (A:3-106) Hypothetical protein BT3618 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=18.50 E-value=24 Score=21.49 Aligned_cols=44 Identities=5% Similarity=0.018 Sum_probs=16.5
Q ss_pred cccccccccceEEEEecCCCCCCchHHHHHHHHHhhchhcccCCceeee
Q 037425 32 MDLAMKLHYLKGFYIFRSHAVQGLSVKLIKESTFYLFNNYYWTCARLRR 80 (141)
Q Consensus 32 lD~~~~~~~~~~v~fy~~~~~~~~~~~~Lk~sLa~~L~~fyplAGRl~~ 80 (141)
++......-+..||||-........... +.++|..|++-| .+..
T Consensus 47 ~~~~~~~~~v~~V~FYGAGC~~~~~~~~----~~~~l~~~f~~a-~I~V 90 (104)
T d1zxoa1 47 LLPQLPEGKFNAVYFYGAGCTPEKAPVL----RRAIADSLPVIG-NIKA 90 (104)
T ss_dssp ------------CEEECTTCCTTTTHHH----HHHHHHHSCCCS-CCEE
T ss_pred cchhhhhccccEEEEEccCCCCccHHHH----HHHHHHhCCCCC-EEEE
Confidence 3433334568999999765432222223 344555566654 4433
Done!