BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037427
(829 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 199/704 (28%), Positives = 312/704 (44%), Gaps = 111/704 (15%)
Query: 139 NNSIFSSLAGL---SSLRTLSLGYNRLKGSIDVKETLDN-----FTNLEDLTLDYSSLHI 190
N+ I S++G +SL +L L N L G + +L + F N+ TLD+
Sbjct: 86 NSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 145
Query: 191 SILKSIAAFTSLKRLSIQNGRVDGA--LGDDEEGLCRLGHLQELHMGGNDLRGTLP---C 245
LK SL+ L + + GA +G C G L+ L + GN + G + C
Sbjct: 146 GGLK----LNSLEVLDLSANSISGANVVGWVLSDGC--GELKHLAISGNKISGDVDVSRC 199
Query: 246 L---YLNQLTGNISSS-PLI-HLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNE 300
+ +L+ + N S+ P + ++++ L +S N+ FS ++LK+ + N+
Sbjct: 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQ 258
Query: 301 IYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHD-LELVDFSDSNLKGEFPNWL 359
+V P P L+ +SL+ + P FL D L +D S ++ G P +
Sbjct: 259 -FVGP---IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 360 LKNNPNLSTLVLRNNSLSG--PFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLA 417
+ S + NN SG P T ++ L L +S N F G +P + ++L+
Sbjct: 315 GSCSLLESLALSSNN-FSGELPMDTLLKMR-GLKVLDLSFNEFSGELPESL-----TNLS 367
Query: 418 MGCFNLEYLVLSENSLHGQLFSK--KNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLY 475
L+ LS N+ G + +N L L+L N FTG+IP +LSNCS L L+
Sbjct: 368 ASLLTLD---LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 476 MSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPS 535
+S N L G IP+ LG+LS L D+ + N L+G IP E + LE L L N+++G +PS
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 536 CSSHST-IQQVHLSKNMLYG--PLKYGTFFNRSSIVTLDLSYNSFSGNIPYWXXXXXXXX 592
S+ T + + LS N L G P G N + L LS NSFSGNIP
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLEN---LAILKLSNNSFSGNIPA--------- 532
Query: 593 XXXXXXXXXEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTF 652
+L + L +DL+ N G IP + S G A F
Sbjct: 533 ---------------ELGDCRSLIWLDLNTNLFNGTIPAAMFKQS--------GKIAANF 569
Query: 653 NPNRRTTYFVGPSILEKE--------ESIMFTTKEISFSYKGKPLN---KMYG------- 694
+R Y ++KE E +++++ P N ++YG
Sbjct: 570 IAGKRYVYIKNDG-MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628
Query: 695 --------VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVS 746
+D+S N L+G IP +IG + + LN HN+++G IP +L + LD+S
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 747 HNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWP 790
N L+G+IP + L L +++NNLS G + +T+P
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF--ETFP 730
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 123/461 (26%), Positives = 199/461 (43%), Gaps = 46/461 (9%)
Query: 346 FSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQT--PIQPHWHLDALHVSKNFFQGN 403
S+S++ G + K + +L++L L NSLSGP T + L L+VS N
Sbjct: 84 LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 139
Query: 404 IPLEIGVYFPSHLAMGCF--NLEYLVLSENSLHGQ---LFSKKNYLRKLARLHLDANYFT 458
FP ++ G +LE L LS NS+ G + + +L L + N +
Sbjct: 140 --------FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191
Query: 459 GEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNY 518
G++ +S C LE L +S NN IP LG+ S+L + ++ N L G
Sbjct: 192 GDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 248
Query: 519 LEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 578
L++L++S N G +P S +Q + L++N G + ++ LDLS N F
Sbjct: 249 LKLLNISSNQFVGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Query: 579 GNIPYWXXXXXXXXXXXXXXXXXEGEVP-NQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS 637
G +P + GE+P + L ++ L+++DLS N G++P L N S
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 638 -----LHNNGDNV-GSSAPTFNPNRRTTY---------FVGPSILEKEESIMFTTKEISF 682
L + +N G P N + T F G + +SF
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 683 SYKGK-------PLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFS 735
+Y L+K+ + L N L GEIP ++ + + L N+LTG IP S
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 736 NLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA 776
N + + +S+N L G+IP + L L + +++N+ S
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 115/449 (25%), Positives = 178/449 (39%), Gaps = 92/449 (20%)
Query: 145 SLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHIS--ILKSIA--AFT 200
+L + L+ L L +N G ++ E+L N + LTLD SS + S IL ++
Sbjct: 338 TLLKMRGLKVLDLSFNEFSG--ELPESLTNLS-ASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 201 SLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPL 260
+L+ L +QN +G G L L LH+ N L GT+P S L
Sbjct: 395 TLQELYLQN---NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP-------------SSL 438
Query: 261 IHLTSIE--RLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLE 318
L+ + +L+L+ + +IP L +YV+ LE
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQEL------------------MYVK-----------TLE 469
Query: 319 SVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSG 378
++ L +D+ P L N +L + S++ L GE P W+ + NL+ L L NNS SG
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSG 528
Query: 379 PFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLF 438
+ L L ++ N F G IP + A Y+ + + + +
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588
Query: 439 SKKNYLR-------KLARLH----------------------------LDANY--FTGEI 461
N L +L RL LD +Y +G I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648
Query: 462 PKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEI 521
PK + + L L + N++ G+IP +G+L LN + ++SN L G IP L L
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708
Query: 522 LDLSENNISGSLPSCSSHSTIQQVHLSKN 550
+DLS NN+SG +P T N
Sbjct: 709 IDLSNNNLSGPIPEMGQFETFPPAKFLNN 737
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 199/704 (28%), Positives = 312/704 (44%), Gaps = 111/704 (15%)
Query: 139 NNSIFSSLAGL---SSLRTLSLGYNRLKGSIDVKETLDN-----FTNLEDLTLDYSSLHI 190
N+ I S++G +SL +L L N L G + +L + F N+ TLD+
Sbjct: 83 NSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 142
Query: 191 SILKSIAAFTSLKRLSIQNGRVDGA--LGDDEEGLCRLGHLQELHMGGNDLRGTLP---C 245
LK SL+ L + + GA +G C G L+ L + GN + G + C
Sbjct: 143 GGLK----LNSLEVLDLSANSISGANVVGWVLSDGC--GELKHLAISGNKISGDVDVSRC 196
Query: 246 L---YLNQLTGNISSS-PLI-HLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNE 300
+ +L+ + N S+ P + ++++ L +S N+ FS ++LK+ + N+
Sbjct: 197 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQ 255
Query: 301 IYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHD-LELVDFSDSNLKGEFPNWL 359
+V P P L+ +SL+ + P FL D L +D S ++ G P +
Sbjct: 256 -FVGP---IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 360 LKNNPNLSTLVLRNNSLSG--PFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLA 417
+ S + NN SG P T ++ L L +S N F G +P + ++L+
Sbjct: 312 GSCSLLESLALSSNN-FSGELPMDTLLKMR-GLKVLDLSFNEFSGELPESL-----TNLS 364
Query: 418 MGCFNLEYLVLSENSLHGQLFSK--KNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLY 475
L+ LS N+ G + +N L L+L N FTG+IP +LSNCS L L+
Sbjct: 365 ASLLTLD---LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 421
Query: 476 MSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPS 535
+S N L G IP+ LG+LS L D+ + N L+G IP E + LE L L N+++G +PS
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 536 CSSHST-IQQVHLSKNMLYG--PLKYGTFFNRSSIVTLDLSYNSFSGNIPYWXXXXXXXX 592
S+ T + + LS N L G P G N + L LS NSFSGNIP
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIGRLEN---LAILKLSNNSFSGNIPA--------- 529
Query: 593 XXXXXXXXXEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTF 652
+L + L +DL+ N G IP + S G A F
Sbjct: 530 ---------------ELGDCRSLIWLDLNTNLFNGTIPAAMFKQS--------GKIAANF 566
Query: 653 NPNRRTTYFVGPSILEKE--------ESIMFTTKEISFSYKGKPLN---KMYG------- 694
+R Y ++KE E +++++ P N ++YG
Sbjct: 567 IAGKRYVYIKNDG-MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 625
Query: 695 --------VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVS 746
+D+S N L+G IP +IG + + LN HN+++G IP +L + LD+S
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 685
Query: 747 HNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWP 790
N L+G+IP + L L +++NNLS G + +T+P
Sbjct: 686 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF--ETFP 727
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 123/461 (26%), Positives = 199/461 (43%), Gaps = 46/461 (9%)
Query: 346 FSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQT--PIQPHWHLDALHVSKNFFQGN 403
S+S++ G + K + +L++L L NSLSGP T + L L+VS N
Sbjct: 81 LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 136
Query: 404 IPLEIGVYFPSHLAMGCF--NLEYLVLSENSLHGQ---LFSKKNYLRKLARLHLDANYFT 458
FP ++ G +LE L LS NS+ G + + +L L + N +
Sbjct: 137 --------FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 188
Query: 459 GEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNY 518
G++ +S C LE L +S NN IP LG+ S+L + ++ N L G
Sbjct: 189 GDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 245
Query: 519 LEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 578
L++L++S N G +P S +Q + L++N G + ++ LDLS N F
Sbjct: 246 LKLLNISSNQFVGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 304
Query: 579 GNIPYWXXXXXXXXXXXXXXXXXEGEVP-NQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS 637
G +P + GE+P + L ++ L+++DLS N G++P L N S
Sbjct: 305 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 638 -----LHNNGDNV-GSSAPTFNPNRRTTY---------FVGPSILEKEESIMFTTKEISF 682
L + +N G P N + T F G + +SF
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 683 SYKGK-------PLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFS 735
+Y L+K+ + L N L GEIP ++ + + L N+LTG IP S
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 736 NLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA 776
N + + +S+N L G+IP + L L + +++N+ S
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 112/273 (41%), Gaps = 57/273 (20%)
Query: 485 IPARLGNLSSLNDIMMAS-NHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQ 543
IP+ L NL LN + + N+L GPIP +L L L ++ N+SG++P +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-----LS 122
Query: 544 QVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWXXXXXXXXXXXXXXXXXEG 603
Q+ ++VTLD SYN+ SG +P G
Sbjct: 123 QIK-------------------TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 604 EVPNQLCGLKQL-RLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFV 662
+P+ +L + +S N L G+IP PTF +
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIP-------------------PTFANLNLAFVDL 204
Query: 663 GPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFS 722
++LE + S++F + + + L+ N L ++ ++G N+ L+
Sbjct: 205 SRNMLEGDASVLFGSDK-----------NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLR 252
Query: 723 HNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP 755
+N + G +P + L + SL+VS NNL G+IP
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 112/275 (40%), Gaps = 61/275 (22%)
Query: 461 IPKSLSNCSRLEGLYMSD-NNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYL 519
IP SL+N L LY+ NNL G IP + L+ L+ + + ++ G IP Q+ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 520 EILDLSENNISGSL-PSCSSHSTIQQVHLSKNMLYG--PLKYGTFFNRSSIVTLDLSYNS 576
LD S N +SG+L PS SS + + N + G P YG+F ++ +S N
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF--SKLFTSMTISRNR 185
Query: 577 FSGNIPYWXXXXXXXXXXXXXXXXXEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNT 636
+G IP L +DLS N L
Sbjct: 186 LTGKIPPTFANL-------------------------NLAFVDLSRNML----------- 209
Query: 637 SLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVD 696
G ++ F ++ T I + S+ F ++ S K LN G+D
Sbjct: 210 --------EGDASVLFGSDKNTQ-----KIHLAKNSLAFDLGKVGLS---KNLN---GLD 250
Query: 697 LSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIP 731
L N++ G +P + +L + +LN S NNL G IP
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%)
Query: 700 NKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLV 759
N L G IPP I KLT + L +H N++G IP S + + +LD S+N L+G +PP +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 760 ELNALVVFSVAHNNLSAA 777
L LV + N +S A
Sbjct: 147 SLPNLVGITFDGNRISGA 164
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 119/272 (43%), Gaps = 34/272 (12%)
Query: 276 FQIPFSLE--PFFNLSKLKVFSGEFNEIY--VEPESSHSTTPKFQLESVSLSGSDIHATF 331
+ IP SL P+ N ++ G N + + P + T QL + ++ +++
Sbjct: 66 YPIPSSLANLPYLNF----LYIGGINNLVGPIPPAIAKLT----QLHYLYITHTNVSGAI 117
Query: 332 PKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHL- 390
P FL L +DFS + L G P + + PNL + N +SG L
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176
Query: 391 DALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARL 450
++ +S+N G IP P+ + NL ++ LS N L G + ++
Sbjct: 177 TSMTISRNRLTGKIP-------PTFANL---NLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 451 HLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIP 510
HL N ++ K + L GL + +N +YG +P L L L+ + ++ N+L G IP
Sbjct: 227 HLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 511 LEFCQLNYLEILDLS--ENN--ISGS-LPSCS 537
Q L+ D+S NN + GS LP+C+
Sbjct: 286 ----QGGNLQRFDVSAYANNKCLCGSPLPACT 313
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 25/103 (24%)
Query: 689 LNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNL----------N 738
L +++ + ++ ++G IP + ++ + L+FS+N L+G +P S S+L N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 739 QVE---------------SLDVSHNNLNGKIPPQLVELNALVV 766
++ S+ +S N L GKIPP LN V
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 104/295 (35%), Gaps = 79/295 (26%)
Query: 19 EGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCC--KWEGVECNTSTG--RVKALY 74
E C Q++ ALL++K D N P L +W+ +DCC W GV C+T T RV L
Sbjct: 1 ELCNPQDKQALLQIKKDLGN-PTTLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLD 56
Query: 75 LSSKR-----------------QFLYSTAGQLN------ASLLTPFQQLETLHLDSNNIA 111
LS FLY G +N + QL L++ N++
Sbjct: 57 LSGLNLPKPYPIPSSLANLPYLNFLY--IGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 112 GFVENXXXXXXXXXXXXXXXXXXXXXFNNSIFS--------------------SLAGLSS 151
G + + SI S S S
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 152 LRT-LSLGYNRLKGSI---------------------DVKETLDNFTNLEDLTLDYSSLH 189
L T +++ NRL G I D + N + + L +SL
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 190 ISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP 244
+ K + +L L ++N R+ G L +GL +L L L++ N+L G +P
Sbjct: 235 FDLGK-VGLSKNLNGLDLRNNRIYGTL---PQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 695 VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
D S KLT ++P + TNI LN +HN L + +F+ +Q+ SLDV N + K+
Sbjct: 14 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKL 69
Query: 755 PPQLVE-LNALVVFSVAHNNLSAAERNPGPYC 785
P+L + L L V ++ HN LS +C
Sbjct: 70 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 101
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 512 EFCQ-LNYLEILDLSENNISG-SLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVT 569
E CQ L L++L+L N +S S + + + + ++HL N + +K F + +++T
Sbjct: 72 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI-QKIKNNPFVKQKNLIT 130
Query: 570 LDLSYNSFSG 579
LDLS+N S
Sbjct: 131 LDLSHNGLSS 140
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 695 VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
D S KLT ++P + TNI LN +HN L + +F+ +Q+ SLDV N + K+
Sbjct: 9 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKL 64
Query: 755 PPQLVE-LNALVVFSVAHNNLSAAERNPGPYC 785
P+L + L L V ++ HN LS +C
Sbjct: 65 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 512 EFCQ-LNYLEILDLSENNISG-SLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVT 569
E CQ L L++L+L N +S S + + + + ++HL N + +K F + +++T
Sbjct: 67 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI-QKIKNNPFVKQKNLIT 125
Query: 570 LDLSYNSFSG 579
LDLS+N S
Sbjct: 126 LDLSHNGLSS 135
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 695 VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
D S KLT ++P + TNI LN +HN L + +F+ +Q+ SLDV N + K+
Sbjct: 19 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKL 74
Query: 755 PPQLVE-LNALVVFSVAHNNLSAAERNPGPYC 785
P+L + L L V ++ HN LS +C
Sbjct: 75 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 106
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 512 EFCQ-LNYLEILDLSENNISG-SLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVT 569
E CQ L L++L+L N +S S + + + + ++HL N + +K F + +++T
Sbjct: 77 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLIT 135
Query: 570 LDLSYNSFSG 579
LDLS+N S
Sbjct: 136 LDLSHNGLSS 145
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 77/172 (44%), Gaps = 23/172 (13%)
Query: 139 NNSI--FSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSI 196
NN I + L L++L LSL N+LK D+ TL + TNL DL D ++ IS L +
Sbjct: 203 NNQISDITPLGILTNLDELSLNGNQLK---DIG-TLASLTNLTDL--DLANNQISNLAPL 256
Query: 197 AAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT---- 252
+ T L L + ++ L L L L + N L P L LT
Sbjct: 257 SGLTKLTELKLGANQISNI-----SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 311
Query: 253 --GNISS-SPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEI 301
NIS SP+ LT ++RLF S N+ SL NL+ + S N+I
Sbjct: 312 YFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLA---NLTNINWLSAGHNQI 360
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 23/130 (17%)
Query: 172 LDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQE 231
L N TNL LTL + I+ + + T+L RL + + + D L L LQ+
Sbjct: 103 LANLTNLTGLTLFNN--QITDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQ 155
Query: 232 LHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKL 291
L+ G NQ+T PL +LT++ERL +S N+ L NL L
Sbjct: 156 LNFG-------------NQVT---DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 199
Query: 292 KVFSGEFNEI 301
+ + ++I
Sbjct: 200 IATNNQISDI 209
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 138/337 (40%), Gaps = 64/337 (18%)
Query: 221 EGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISS-------SPLIHLTSIERLFLSY 273
+G+ L +L +++ N L P L +L + + +PL +LT++ L L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 116
Query: 274 NQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPK 333
NQ L+ NL++L++ S ++I S+ S Q + +D+ K
Sbjct: 117 NQITDIDPLKNLTNLNRLELSSNTISDI-----SALSGLTSLQQLNFGNQVTDL-----K 166
Query: 334 FLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDAL 393
L N LE +D S SN + +L NL +L+ NN +S TP+ +LD L
Sbjct: 167 PLANLTTLERLDIS-SNKVSDIS--VLAKLTNLESLIATNNQISDI--TPLGILTNLDEL 221
Query: 394 HVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLD 453
++ N + +IG NL L L+ N + + + L KL L L
Sbjct: 222 SLNGNQLK-----DIGTL------ASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLG 268
Query: 454 ANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEF 513
AN +SN S L G L++L ++ + N L+ P+
Sbjct: 269 ANQ--------ISNISPLAG------------------LTALTNLELNENQLEDISPI-- 300
Query: 514 CQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKN 550
L L L L NNIS P SS + +Q++ S N
Sbjct: 301 SNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFSNN 336
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 77/172 (44%), Gaps = 23/172 (13%)
Query: 139 NNSI--FSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSI 196
NN I + L L++L LSL N+LK D+ TL + TNL DL D ++ IS L +
Sbjct: 204 NNQISDITPLGILTNLDELSLNGNQLK---DIG-TLASLTNLTDL--DLANNQISNLAPL 257
Query: 197 AAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT---- 252
+ T L L + ++ L L L L + N L P L LT
Sbjct: 258 SGLTKLTELKLGANQISNI-----SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 312
Query: 253 --GNISS-SPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEI 301
NIS SP+ LT ++RLF S N+ SL NL+ + S N+I
Sbjct: 313 YFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLA---NLTNINWLSAGHNQI 361
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 28/133 (21%)
Query: 172 LDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQE 231
L N TNL LTL + I+ + + T+L RL + + + D L L LQ+
Sbjct: 103 LANLTNLTGLTLFNN--QITDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQ 155
Query: 232 LHMGGN---DLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNL 288
L N DL+ PL +LT++ERL +S N+ L NL
Sbjct: 156 LSFSSNQVTDLK------------------PLANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 289 SKLKVFSGEFNEI 301
L + + ++I
Sbjct: 198 ESLIATNNQISDI 210
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 414 SHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEG 473
S C L+ +V N G K R + L+LD N FT +PK LSN L
Sbjct: 2 SRCPTECTCLDTVVRCSN--KGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTL 58
Query: 474 LYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNIS 530
+ +S+N + N++ L ++++ N L+ P F L L +L L N+IS
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 706 IPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVE-LNAL 764
+P ++ ++ ++ S+N ++ + SFSN+ Q+ +L +S+N L IPP+ + L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL 104
Query: 765 VVFSVAHNNLSAA 777
+ S+ N++S
Sbjct: 105 RLLSLHGNDISVV 117
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 695 VDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754
D S KLT IP + +NI LN +HN L + P +F+ +Q+ LD N++ K+
Sbjct: 9 ADCSHLKLT-HIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSI-SKL 64
Query: 755 PPQLVELNALV-VFSVAHNNLSAAERNPGPYC 785
P+L ++ L+ V ++ HN LS +C
Sbjct: 65 EPELCQILPLLKVLNLQHNELSQISDQTFVFC 96
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 29/231 (12%)
Query: 145 SLAGLSSLRTLSLGYNRLKGSIDVKE--TLDNFT-----NLEDLTLDYSSLHISILKSIA 197
S GLS+LR LSL K S+ + +D+F+ LE L +D +++ + +
Sbjct: 291 SFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFT 350
Query: 198 AFTSLKRLSIQNGRVDGALGDDEEGLC-----------RLGHLQELHMGGNDLRGTLPCL 246
SLK LS+ +E + H+ ++ G G L L
Sbjct: 351 GLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRIL 410
Query: 247 YL--NQLTGNISSSPLIHLTSIERLFLSYNQF----QIPFSLEPFFNLSKLKVFSGEFNE 300
L N++ +S L +I ++LSYN++ F+L P +L +L +
Sbjct: 411 DLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVP--SLQRLMLRRVALKN 468
Query: 301 IYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNL 351
+ + P P L + LS ++I L +LE++DF +NL
Sbjct: 469 VDISPSPFR---PLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNL 516
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 119/311 (38%), Gaps = 36/311 (11%)
Query: 451 HLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIP 510
HL + ++P S + L ++ N L P S L + N + P
Sbjct: 13 HLKLTHIPDDLP------SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP 66
Query: 511 LEFCQ-LNYLEILDLSENNISG-SLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIV 568
E CQ L L++L+L N +S S + + + ++ L N ++ +K F N+ +++
Sbjct: 67 -ELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHK-IKSNPFKNQKNLI 124
Query: 569 TLDLSYNSFS----GNIPYWXXXXXXXXXXXXXXXXXEGEVPNQLCGLKQLRLIDLSNNN 624
LDLS+N S G E+ + G LR +DLS+N
Sbjct: 125 KLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEEL--EFLGNSSLRKLDLSSNP 182
Query: 625 LFGQIPGCLDNTS-----LHNNGDNVGSSAPTFNPN---RRTTYFVGPSI--LEKEESIM 674
L PGC L NN NP+ + SI L + +
Sbjct: 183 LKEFSPGCFQTIGKLFALLLNNAQ--------LNPHLTEKLCWELSNTSIQNLSLANNQL 234
Query: 675 FTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSF 734
T E +FS G + +DLS N L L ++R L+ +NN+ + P SF
Sbjct: 235 LATSESTFS--GLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSF 292
Query: 735 SNLNQVESLDV 745
L+ + L +
Sbjct: 293 YGLSNLRYLSL 303
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 143/352 (40%), Gaps = 66/352 (18%)
Query: 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNL 481
NL L LS N+LH +YL L L L+ N P+S S L Y+S
Sbjct: 249 NLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLR--YLSLKRA 306
Query: 482 YGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHS- 540
+ L + +++D F L YLE L++ +NNI PS S++
Sbjct: 307 FTKQSVSLASHPNIDDF-------------SFQWLKYLEYLNMDDNNI----PSTKSNTF 349
Query: 541 ----TIQQVHLSKNML-YGPLKYGTFFN--RSSIVTLDLSYNSFSGNIPYWXXXXXXXXX 593
+++ + LSK L TF + S ++TL+L+ N S
Sbjct: 350 TGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHIS--------------- 394
Query: 594 XXXXXXXXEGEVPN-QLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTF 652
++ N L QLR++DL N + ++ G + L N + + S +
Sbjct: 395 ----------KIANGTFSWLGQLRILDLGLNEIEQKLSGQ-EWRGLRNIFE-IYLSYNKY 442
Query: 653 NPNRRTTYFVGPSILEKEESIMFTTKEISFSYKG-KPLNKMYGVDLSCNKLTGEIPPQIG 711
+++ + PS L++ K + S +PL + +DLS N + +
Sbjct: 443 LQLSTSSFALVPS-LQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLE 501
Query: 712 KLTNIRALNFSHNNLTGVI-------PVSF-SNLNQVESLDVSHNNLNGKIP 755
L N+ L+F HNNL + PV+F L+ + L++ N L+ +IP
Sbjct: 502 GLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLD-EIP 552
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 144 SSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLK 203
SSL+G+ +LR LSLG N +K ++ D LE+L + Y+ I+ L I +L+
Sbjct: 65 SSLSGMENLRILSLGRNLIKKIENLDAVAD---TLEELWISYN--QIASLSGIEKLVNLR 119
Query: 204 RLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDL 239
L + N ++ D+ L L L++L + GN L
Sbjct: 120 VLYMSNNKITNWGEIDK--LAALDKLEDLLLAGNPL 153
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 144 SSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLK 203
SSL+G+ +LR LSLG N +K ++ D LE+L + Y+ I+ L I +L+
Sbjct: 64 SSLSGMENLRILSLGRNLIKKIENLDAVAD---TLEELWISYN--QIASLSGIEKLVNLR 118
Query: 204 RLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDL 239
L + N ++ D+ L L L++L + GN L
Sbjct: 119 VLYMSNNKITNWGEIDK--LAALDKLEDLLLAGNPL 152
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 689 LNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHN 748
L+ + +D+S NK+ + L N+++L N+L + +FS LN +E L +
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 749 NLNGKIPPQLVELNALVVFSVAHNNLSA 776
NL L L+ L+V + H N++A
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINA 190
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 82/368 (22%), Positives = 138/368 (37%), Gaps = 91/368 (24%)
Query: 426 LVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNI 485
LV+ N+ G L L L LD N F + + + LE L ++ NL G +
Sbjct: 68 LVIRNNTFRG--------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119
Query: 486 PARLGN----LSSLNDIMMASNHLQGPIPLEF-CQLNYLEILDLSEN-----------NI 529
+ GN L+SL +++ N+++ P F + +LDL+ N N
Sbjct: 120 LS--GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177
Query: 530 SGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWXXXXX 589
G + S+I +++ L G K G F +SI TLDLS N F ++
Sbjct: 178 QGKHFTLLRLSSITLQDMNEYWL-GWEKCGNPFKNTSITTLDLSGNGFKESMA------- 229
Query: 590 XXXXXXXXXXXXEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSA 649
F I G + + +N N+GSS
Sbjct: 230 ---------------------------------KRFFDAIAGTKIQSLILSNSYNMGSSF 256
Query: 650 PTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQ 709
N F P +F++KG + + DLS +K+ +
Sbjct: 257 GHTN-------FKDPD---------------NFTFKGLEASGVKTCDLSKSKIFALLKSV 294
Query: 710 IGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVE-LNALVVFS 768
T++ L + N + + +F L + L++S N L G I ++ E L+ L V
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLD 353
Query: 769 VAHNNLSA 776
+++N++ A
Sbjct: 354 LSYNHIRA 361
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 143 FSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSL 202
S LAGL++L L L N+L+ D+ + N NL LTL ++ +IS + +++ T L
Sbjct: 279 ISPLAGLTALTNLELNENQLE---DISP-ISNLKNLTYLTLYFN--NISDISPVSSLTKL 332
Query: 203 KRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT 252
+RL N +V D L L ++ L G N + P L ++T
Sbjct: 333 QRLFFANNKV-----SDVSSLANLTNINWLSAGHNQISDLTPLANLTRIT 377
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 23/130 (17%)
Query: 172 LDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQE 231
L N TNL LTL + I+ + + T+L RL + + + D L L LQ+
Sbjct: 107 LANLTNLTGLTLFNN--QITDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQ 159
Query: 232 LHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKL 291
L G NQ+T PL +LT++ERL +S N+ L NL L
Sbjct: 160 LSFG-------------NQVT---DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 203
Query: 292 KVFSGEFNEI 301
+ + ++I
Sbjct: 204 IATNNQISDI 213
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 143 FSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSL 202
S LAGL++L L L N+L+ D+ + N NL LTL ++ +IS + +++ T L
Sbjct: 276 ISPLAGLTALTNLELNENQLE---DISP-ISNLKNLTYLTLYFN--NISDISPVSSLTKL 329
Query: 203 KRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT 252
+RL N +V D L L ++ L G N + P L ++T
Sbjct: 330 QRLFFYNNKV-----SDVSSLANLTNINWLSAGHNQISDLTPLANLTRIT 374
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 172 LDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQE 231
L N TNL LTL + I+ + + T+L RL + + + D L L LQ+
Sbjct: 103 LANLTNLTGLTLFNN--QITDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQ 155
Query: 232 LHMGGN---DLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNL 288
L+ N DL+ PL +LT++ERL +S N+ L NL
Sbjct: 156 LNFSSNQVTDLK------------------PLANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 289 SKLKVFSGEFNEI 301
L + + ++I
Sbjct: 198 ESLIATNNQISDI 210
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 143 FSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSL 202
S LAGL++L L L N+L+ D+ + N NL LTL ++ +IS + +++ T L
Sbjct: 275 ISPLAGLTALTNLELNENQLE---DISP-ISNLKNLTYLTLYFN--NISDISPVSSLTKL 328
Query: 203 KRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT 252
+RL N +V D L L ++ L G N + P L ++T
Sbjct: 329 QRLFFYNNKV-----SDVSSLANLTNINWLSAGHNQISDLTPLANLTRIT 373
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 23/130 (17%)
Query: 172 LDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQE 231
L N TNL LTL + I+ + + T+L RL + + + D L L LQ+
Sbjct: 103 LANLTNLTGLTLFNN--QITDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQ 155
Query: 232 LHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKL 291
L+ G NQ+T PL +LT++ERL +S N+ L NL L
Sbjct: 156 LNFG-------------NQVT---DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 199
Query: 292 KVFSGEFNEI 301
+ + ++I
Sbjct: 200 IATNNQISDI 209
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 121/283 (42%), Gaps = 38/283 (13%)
Query: 221 EGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISS-------SPLIHLTSIERLFLSY 273
+G+ L +L +++ N L P L +L + + +PL +LT++ L L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 116
Query: 274 NQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPK 333
NQ L+ NL++L++ S ++I S+ S Q + +D+ K
Sbjct: 117 NQITDIDPLKNLTNLNRLELSSNTISDI-----SALSGLTSLQQLNFGNQVTDL-----K 166
Query: 334 FLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDAL 393
L N LE +D S SN + +L NL +L+ NN +S TP+ +LD L
Sbjct: 167 PLANLTTLERLDIS-SNKVSDIS--VLAKLTNLESLIATNNQISDI--TPLGILTNLDEL 221
Query: 394 HVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLD 453
++ N + +IG NL L L+ N + + + L KL L L
Sbjct: 222 SLNGNQLK-----DIGTL------ASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLG 268
Query: 454 ANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIP-ARLGNLSSL 495
AN + P L+ + L L +++N L P + L NL+ L
Sbjct: 269 ANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYL 309
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 143 FSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSL 202
S LAGL++L L L N+L+ D+ + N NL LTL ++ +IS + +++ T L
Sbjct: 276 ISPLAGLTALTNLELNENQLE---DISP-ISNLKNLTYLTLYFN--NISDISPVSSLTKL 329
Query: 203 KRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT 252
+RL N +V D L L ++ L G N + P L ++T
Sbjct: 330 QRLFFYNNKV-----SDVSSLANLTNINWLSAGHNQISDLTPLANLTRIT 374
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 28/133 (21%)
Query: 172 LDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQE 231
L N TNL LTL + I+ + + T+L RL + + + D L L LQ+
Sbjct: 103 LANLTNLTGLTLFNN--QITDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQ 155
Query: 232 LHMGGN---DLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNL 288
L N DL+ PL +LT++ERL +S N+ L NL
Sbjct: 156 LSFSSNQVTDLK------------------PLANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 289 SKLKVFSGEFNEI 301
L + + ++I
Sbjct: 198 ESLIATNNQISDI 210
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 143 FSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSL 202
S LAGL++L L L N+L+ D+ + N NL LTL ++ +IS + +++ T L
Sbjct: 280 ISPLAGLTALTNLELNENQLE---DISP-ISNLKNLTYLTLYFN--NISDISPVSSLTKL 333
Query: 203 KRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT 252
+RL N +V D L L ++ L G N + P L ++T
Sbjct: 334 QRLFFYNNKV-----SDVSSLANLTNINWLSAGHNQISDLTPLANLTRIT 378
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 23/130 (17%)
Query: 172 LDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQE 231
L N TNL LTL + I+ + + T+L RL + + + D L L LQ+
Sbjct: 108 LANLTNLTGLTLFNN--QITDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQ 160
Query: 232 LHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKL 291
L G NQ+T PL +LT++ERL +S N+ L NL L
Sbjct: 161 LSFG-------------NQVT---DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 204
Query: 292 KVFSGEFNEI 301
+ + ++I
Sbjct: 205 IATNNQISDI 214
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 143 FSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSL 202
S++AGL S++TL L ++ DV L +NL+ L LD + I+ + +A T+L
Sbjct: 106 VSAIAGLQSIKTLDLTSTQIT---DVTP-LAGLSNLQVLYLDLN--QITNISPLAGLTNL 159
Query: 203 KRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIH 262
+ LSI N +V +D L L L L N + SPL
Sbjct: 160 QYLSIGNNQV-----NDLTPLANLSKLTTLRADDNKISDI---------------SPLAS 199
Query: 263 LTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFS 295
L ++ + L NQ + P NLS L + +
Sbjct: 200 LPNLIEVHLKDNQIS---DVSPLANLSNLFIVT 229
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 143 FSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSL 202
S++AGL S++TL L ++ DV L +NL+ L LD + I+ + +A T+L
Sbjct: 100 VSAIAGLQSIKTLDLTSTQIT---DVTP-LAGLSNLQVLYLDLN--QITNISPLAGLTNL 153
Query: 203 KRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQL 251
+ LSI N +V D L L L L N + P L L
Sbjct: 154 QYLSIGNAQV-----SDLTPLANLSKLTTLKADDNKISDISPLASLPNL 197
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%)
Query: 412 FPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRL 471
P+ + NLE L +++N L + L LA L LD N P+ + ++L
Sbjct: 76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 472 EGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNIS 530
L + N L L+SL ++ + +N L+ F +L L+ L L N +
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 11/139 (7%)
Query: 449 RLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARL-GNLSSLNDIMMASNHLQG 507
+L L +N + K+ ++L LY++DN L +PA + L +L + + N LQ
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99
Query: 508 -PIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLK---YGTFFN 563
PI + F QL L L L N + SLP S + +LS + Y L+ G F
Sbjct: 100 LPIGV-FDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLS--LGYNELQSLPKGVFDK 155
Query: 564 RSSIVTLDLSYNSFSGNIP 582
+S+ L L YN+ +P
Sbjct: 156 LTSLKELRL-YNNQLKRVP 173
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 90/227 (39%), Gaps = 37/227 (16%)
Query: 340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNF 399
D L+D ++ + E + KN NL TL+L NN +S P L+ L++SKN
Sbjct: 53 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 400 FQ---GNIP-----LEIGVYFPSHLAMGCFN-LEYLVLSE---NSLHG--------QLFS 439
+ +P L + + + FN L +++ E N L Q
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 440 KKNYLR---------------KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGN 484
K +Y+R L LHLD N T SL + L L +S N++
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 485 IPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISG 531
L N L ++ + +N L +P Y++++ L NNIS
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 90/227 (39%), Gaps = 37/227 (16%)
Query: 340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNF 399
D L+D ++ + E + KN NL TL+L NN +S P L+ L++SKN
Sbjct: 53 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 400 FQ---GNIP-----LEIGVYFPSHLAMGCFN-LEYLVLSE---NSLHG--------QLFS 439
+ +P L + + + FN L +++ E N L Q
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 440 KKNYLR---------------KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGN 484
K +Y+R L LHLD N T SL + L L +S N++
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 485 IPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISG 531
L N L ++ + +N L +P Y++++ L NNIS
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 277
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 689 LNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHN 748
L ++ ++LS N+L P LT++R L H + + +F +L +E L++SHN
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 749 NL 750
NL
Sbjct: 237 NL 238
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 695 VDLSCN---KLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN 751
+DLS N +L E P +LTN+ +L SHN+L + +F + + LD+S N+L+
Sbjct: 44 LDLSHNNLSRLRAEWTP--TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101
Query: 752 GKIPPQLVELNALVVFSVAHNNLSAAERN 780
+L AL V + +N++ +RN
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRN 130
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 689 LNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHN 748
L ++ ++LS N+L P LT++R L H + + +F +L +E L++SHN
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 749 NL 750
NL
Sbjct: 237 NL 238
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 263 LTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVS 321
L + L LS+NQ Q +P + L L V FN + P + +L+ +
Sbjct: 77 LPVLGTLDLSHNQLQSLPLLGQ---TLPALTVLDVSFNRLTSLPLGALRGL--GELQELY 131
Query: 322 LSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
L G+++ P L LE + +++NL E P LL NL TL+L+ NSL
Sbjct: 132 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 422 NLEYLVLSENSLHGQLFSKK-NYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNN 480
+LE L +S NSL+ + + + + L+L +N TG + + L ++ L+ NN
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH---NN 460
Query: 481 LYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLP 534
+IP + +L +L ++ +ASN L+ F +L L+ + L +N + P
Sbjct: 461 RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 668 EKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLT 727
E E + ++ + ++ K P + + LS N ++ P I L+ +R L SHN +
Sbjct: 31 ELESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR 89
Query: 728 GVIPVSFSNLNQVESLDVSHNNL 750
+ F +E LDVSHN L
Sbjct: 90 SLDFHVFLFNQDLEYLDVSHNRL 112
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 659 TYFVGPSILEKEESIMFTTKEISFSYK----GKPLNKMYGVDLSCNKLTGEIPPQIGKLT 714
+ F G S L++ ++++ + +K K ++ + +D+S N L +
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427
Query: 715 -NIRALNFSHNNLTGVIPVSFSNLN-QVESLDVSHNNLNGKIPPQLVELNALVVFSVAHN 772
+I LN S N LTG + F L +V+ LD+ HNN IP + L AL +VA N
Sbjct: 428 ESILVLNLSSNMLTGSV---FRCLPPKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASN 483
Query: 773 NLSAA 777
L +
Sbjct: 484 QLKSV 488
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 263 LTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVS 321
L + L LS+NQ Q +P + L L V FN + P + +L+ +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQ---TLPALTVLDVSFNRLTSLPLGALRGL--GELQELY 130
Query: 322 LSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
L G+++ P L LE + +++NL E P LL NL TL+L+ NSL
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 88/225 (39%), Gaps = 36/225 (16%)
Query: 340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNF 399
D L+D ++++ E K +L LVL NN +S + P L L++SKN
Sbjct: 55 DTTLLDLQNNDI-SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 400 F---QGNIP---LEIGVY------FPSHLAMGCFNLEYLVLSENSLHGQLFS-------K 440
N+P +E+ ++ P + G N+ + + N L F K
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173
Query: 441 KNYLR---------------KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNI 485
NYLR L LHLD N + L S+L L + N +
Sbjct: 174 LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233
Query: 486 PARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNIS 530
L L +L ++ + +N L +P L L+++ L NNI+
Sbjct: 234 NGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT 277
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 263 LTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVS 321
L + L LS+NQ Q +P + L L V FN + P + +L+ +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQ---TLPALTVLDVSFNRLTSLPLGALRGL--GELQELY 130
Query: 322 LSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
L G+++ P L LE + +++NL E P LL NL TL+L+ NSL
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 263 LTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVS 321
L + L LS+NQ Q +P + L L V FN + P + +L+ +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQ---TLPALTVLDVSFNRLTSLPLGALRGL--GELQELY 130
Query: 322 LSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
L G+++ P L LE + +++NL E P LL NL TL+L+ NSL
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 692 MYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN 751
+ +DLS N++T + + N++AL + N + + SFS+L +E LD+S+N L+
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 27/168 (16%)
Query: 426 LVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNI 485
LV+ N+ G L L L LD N F + + + LE L ++ NL G +
Sbjct: 68 LVIRNNTFRG--------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119
Query: 486 PARLGN----LSSLNDIMMASNHLQGPIPLEF-CQLNYLEILDLSEN-----------NI 529
+ GN L+SL +++ N+++ P F + +LDL+ N N
Sbjct: 120 LS--GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177
Query: 530 SGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSF 577
G + S+I +++ L G K G F +SI TLDLS N F
Sbjct: 178 QGKHFTLLRLSSITLQDMNEYWL-GWEKCGNPFKNTSITTLDLSGNGF 224
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 694 GVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN 751
+DLS N++T + + N++AL + N + + SFS+L +E LD+S+N L+
Sbjct: 30 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 263 LTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVS 321
L + L LS+NQ Q +P + L L V FN + P + +L+ +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQ---TLPALTVLDVSFNRLTSLPLGALRGL--GELQELY 130
Query: 322 LSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
L G+++ P L LE + +++NL E P LL NL TL+L+ NSL
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 689 LNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGV 729
L ++Y L+ N LT E+P +I L+N+R L+ SHN LT +
Sbjct: 249 LTRLY---LNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL 285
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 710 IGKLTNIRALNFSHNNLTGV-IPVSFSNLNQVESLDVSHNNLNG 752
IG L ++ LN +HN + +P FSNL +E LD+S N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 710 IGKLTNIRALNFSHNNLTGV-IPVSFSNLNQVESLDVSHNNLNG 752
IG L ++ LN +HN + +P FSNL +E LD+S N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 710 IGKLTNIRALNFSHNNLTGV-IPVSFSNLNQVESLDVSHNNLNG 752
IG L ++ LN +HN + +P FSNL +E LD+S N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 710 IGKLTNIRALNFSHNNLTGV-IPVSFSNLNQVESLDVSHNNLNG 752
IG L ++ LN +HN + +P FSNL +E LD+S N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 710 IGKLTNIRALNFSHNNLTGV-IPVSFSNLNQVESLDVSHNNLNG 752
IG L ++ LN +HN + +P FSNL +E LD+S N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 710 IGKLTNIRALNFSHNNLTGV-IPVSFSNLNQVESLDVSHNNLNG 752
IG L ++ LN +HN + +P FSNL +E LD+S N +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 689 LNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHN 748
L + +DLS +L P L++++ LN SHNN + + LN ++ LD S N
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552
Query: 749 NL 750
++
Sbjct: 553 HI 554
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%)
Query: 706 IPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALV 765
+P +L N+ L+ S L + P +F++L+ ++ L++SHNN LN+L
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 766 VFSVAHNNLSAAER 779
V + N++ +++
Sbjct: 546 VLDYSLNHIMTSKK 559
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 710 IGKLTNIRALNFSHNNLTGV-IPVSFSNLNQVESLDVSHNNLNG 752
IG L ++ LN +HN + +P FSNL +E LD+S N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 689 LNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHN 748
L + +DLS +L P L++++ LN SHNN + + LN ++ LD S N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528
Query: 749 NL 750
++
Sbjct: 529 HI 530
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%)
Query: 706 IPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALV 765
+P +L N+ L+ S L + P +F++L+ ++ L++SHNN LN+L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 766 VFSVAHNNLSAAER 779
V + N++ +++
Sbjct: 522 VLDYSLNHIMTSKK 535
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 219 DEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT------GNISS-SPLIHLTSIERLFL 271
D GL L L+ L++G N + L +L IS PL LT ++ L+L
Sbjct: 121 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 180
Query: 272 SYNQFQIPFSLEPFFNLSKLKVFSGE 297
S N +L NL L++FS E
Sbjct: 181 SKNHISDLRALAGLKNLDVLELFSQE 206
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 710 IGKLTNIRALNFSHNNLTGV-IPVSFSNLNQVESLDVSHNNL 750
IG L ++ LN +HN + +P FSNL +E LD+S N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 219 DEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT------GNISS-SPLIHLTSIERLFL 271
D GL L L+ L++G N + L +L IS PL LT ++ L+L
Sbjct: 146 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 205
Query: 272 SYNQFQIPFSLEPFFNLSKLKVFSGE 297
S N +L NL L++FS E
Sbjct: 206 SKNHISDLRALAGLKNLDVLELFSQE 231
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 219 DEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQL-TGNISSS------PLIHLTSIERLFL 271
D GL L L+ L++G N + L +L T ++ + PL LT ++ L+L
Sbjct: 124 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARLTKLQNLYL 183
Query: 272 SYNQFQIPFSLEPFFNLSKLKVFSGE 297
S N +L NL L++FS E
Sbjct: 184 SKNHISDLRALRGLKNLDVLELFSQE 209
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 219 DEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT------GNISS-SPLIHLTSIERLFL 271
D GL L L+ L++G N + L +L IS PL LT ++ L+L
Sbjct: 123 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 182
Query: 272 SYNQFQIPFSLEPFFNLSKLKVFSGE 297
S N +L NL L++FS E
Sbjct: 183 SKNHISDLRALAGLKNLDVLELFSQE 208
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 219 DEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT------GNISS-SPLIHLTSIERLFL 271
D GL L L+ L++G N + L +L IS PL LT ++ L+L
Sbjct: 144 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 203
Query: 272 SYNQFQIPFSLEPFFNLSKLKVFSGE 297
S N +L NL L++FS E
Sbjct: 204 SKNHISDLRALAGLKNLDVLELFSQE 229
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 219 DEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT------GNISS-SPLIHLTSIERLFL 271
D GL L L+ L++G N + L +L IS PL LT ++ L+L
Sbjct: 144 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 203
Query: 272 SYNQFQIPFSLEPFFNLSKLKVFSGE 297
S N +L NL L++FS E
Sbjct: 204 SKNHISDLRALAGLKNLDVLELFSQE 229
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 219 DEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT------GNISS-SPLIHLTSIERLFL 271
D GL L L+ L++G N + L +L IS PL LT ++ L+L
Sbjct: 144 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 203
Query: 272 SYNQFQIPFSLEPFFNLSKLKVFSGE 297
S N +L NL L++FS E
Sbjct: 204 SKNHISDLRALAGLKNLDVLELFSQE 229
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 689 LNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHN 748
L + +DLS +L P L++++ LN SHNN + + LN ++ LD S N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Query: 749 NL 750
++
Sbjct: 234 HI 235
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%)
Query: 706 IPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALV 765
+P +L N+ L+ S L + P +F++L+ ++ L++SHNN LN+L
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 766 VFSVAHNNLSAAER 779
V + N++ +++
Sbjct: 227 VLDYSLNHIMTSKK 240
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 219 DEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT------GNISS-SPLIHLTSIERLFL 271
D GL L L+ L++G N + L +L IS PL LT ++ L+L
Sbjct: 124 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 183
Query: 272 SYNQFQIPFSLEPFFNLSKLKVFSGE 297
S N +L NL L++FS E
Sbjct: 184 SKNHISDLRALAGLKNLDVLELFSQE 209
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 219 DEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT------GNISS-SPLIHLTSIERLFL 271
D GL L L+ L++G N + L +L IS PL LT ++ L+L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 185
Query: 272 SYNQFQIPFSLEPFFNLSKLKVFSGE 297
S N +L NL L++FS E
Sbjct: 186 SKNHISDLRALAGLKNLDVLELFSQE 211
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 219 DEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT------GNISS-SPLIHLTSIERLFL 271
D GL L L+ L++G N + L +L IS PL LT ++ L+L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 185
Query: 272 SYNQFQIPFSLEPFFNLSKLKVFSGE 297
S N +L NL L++FS E
Sbjct: 186 SKNHISDLRALAGLKNLDVLELFSQE 211
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 263 LTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVS 321
L + L LS+NQ Q +P + L L V FN + P + +L+ +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQ---TLPALTVLDVSFNRLTSLPLGALRGL--GELQELY 130
Query: 322 LSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
L G+++ P L LE + ++++L E P LL NL TL+L+ NSL
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 697 LSC--NKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLN-QVESLDVSHNNLNGK 753
L C N+L G++P G + +LN ++N +T IP +F QVE+L +HN L K
Sbjct: 335 LECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKL--K 390
Query: 754 IPPQLVELNALVVFSV 769
P + + ++ V S
Sbjct: 391 YIPNIFDAKSVSVXSA 406
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 263 LTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVS 321
L + L LS+NQ Q +P + L L V FN + P + +L+ +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQ---TLPALTVLDVSFNRLTSLPLGALRGL--GELQELY 130
Query: 322 LSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
L G+++ P L LE + +++ L E P LL NL TL+L+ NSL
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 263 LTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVS 321
L + L LS+NQ Q +P + L L V FN + P + +L+ +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQ---TLPALTVLDVSFNRLTSLPLGALRGL--GELQELY 130
Query: 322 LSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
L G+++ P L LE + +++ L E P LL NL TL+L+ NSL
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 89/232 (38%), Gaps = 50/232 (21%)
Query: 355 FPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKN------------FFQG 402
P + N P L+TL + NN+L Q L L +S N F
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 197
Query: 403 N----------IPLEIGVYFPSH----LAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLA 448
N IP+ + SH + G N+E +L H L L
Sbjct: 198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ--HNNLTDTAWLLNYPG 255
Query: 449 RLHLDANYFTGEIPKSL----SNCSRLEGLYMSDN-----NLYGN-IPARLGNLSSLNDI 498
+ +D +Y E+ K + RLE LY+S+N NLYG IP +L +
Sbjct: 256 LVEVDLSY--NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP-------TLKVL 306
Query: 499 MMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKN 550
++ NHL + Q + LE L L N+I S+H T++ + LS N
Sbjct: 307 DLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL--KLSTHHTLKNLTLSHN 355
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 692 MYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNL-TGVIPVSFSNLNQVESLDVSHNNL 750
+ + LS N+LT + + ++ N S+N L T IP++ VE LD SHN++
Sbjct: 173 LQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIPIA------VEELDASHNSI 223
Query: 751 NGKIPPQLVELNALVVFSVAHNNLS 775
N P VE L + + HNNL+
Sbjct: 224 NVVRGPVNVE---LTILKLQHNNLT 245
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 712 KLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNL 750
KLTN+ LN +HN L + F L + LD+S+N L
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 263 LTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVS 321
L + L LS+NQ Q +P + L L V FN + P + +L+ +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQ---TLPALTVLDVSFNRLTSLPLGALRGL--GELQELY 130
Query: 322 LSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
L G+++ P L LE + +++ L E P LL NL TL+L+ NSL
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 263 LTSIERLFLSYNQFQ-IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVS 321
L + L LS+NQ Q +P + L L V FN + P + +L+ +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQ---TLPALTVLDVSFNRLTSLPLGALRGL--GELQELY 130
Query: 322 LSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSL 376
L G+++ P L LE + +++ L E P LL NL TL+L+ NSL
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 708 PQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNA---- 763
P + L + L+ S N+L+ + P SF L ++ L + + + Q++E NA
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI------QVIERNAFDNL 254
Query: 764 --LVVFSVAHNNLS 775
LV ++AHNNL+
Sbjct: 255 QSLVEINLAHNNLT 268
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 688 PLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSH 747
PL K+ +DLS N L+ P L +++ L + + + +F NL + ++++H
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264
Query: 748 NNL 750
NNL
Sbjct: 265 NNL 267
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 90/234 (38%), Gaps = 50/234 (21%)
Query: 353 GEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKN------------FF 400
P + N P L+TL + NN+L Q L L +S N F
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 189
Query: 401 QGN----------IPLEIGVYFPSH----LAMGCFNLEYLVLSENSLHGQLFSKKNYLRK 446
N IP+ + SH + G N+E +L H L L
Sbjct: 190 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ--HNNLTDTAWLLNY 247
Query: 447 LARLHLDANYFTGEIPKSLSN----CSRLEGLYMSDN-----NLYGN-IPARLGNLSSLN 496
+ +D +Y E+ K + + RLE LY+S+N NLYG IP +L
Sbjct: 248 PGLVEVDLSY--NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP-------TLK 298
Query: 497 DIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKN 550
+ ++ NHL + Q + LE L L N+I S+H T++ + LS N
Sbjct: 299 VLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL--KLSTHHTLKNLTLSHN 349
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 692 MYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNL-TGVIPVSFSNLNQVESLDVSHNNL 750
+ + LS N+LT + + ++ N S+N L T IP++ VE LD SHN++
Sbjct: 167 LQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIPIA------VEELDASHNSI 217
Query: 751 NGKIPPQLVELNALVVFSVAHNNLS 775
N P VE L + + HNNL+
Sbjct: 218 NVVRGPVNVE---LTILKLQHNNLT 239
>pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution.
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
Length = 814
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 35 DFFNDPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLN--AS 92
D +ND + N+V D N S+ K T+ ++A+ L S R FL+ LN A
Sbjct: 87 DKWND-VTIGNYVYDTNDSNMQKLNQKLDETNAKNIEAIKLDSNRTFLWKDLDNLNNSAQ 145
Query: 93 LLTPFQQLETL 103
L +++LE L
Sbjct: 146 LTATYRRLEDL 156
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 710 IGKLTNIRALNFSHNNLTGV-IPVSFSNLNQVESLDVSHN 748
IG+L ++ LN +HN + +P FSNL + +D+S+N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 710 IGKLTNIRALNFSHNNLTGV-IPVSFSNLNQVESLDVSHN 748
IG+L ++ LN +HN + +P FSNL + +D+S+N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 687 KPLNKMYGVDLSCNKLTGE--IPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLD 744
+ L + +DLS N + Q+ L++++ LN SHN G+ +F Q+E LD
Sbjct: 344 EKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLD 403
Query: 745 VSHNNLNGKIP 755
++ L+ P
Sbjct: 404 LAFTRLHINAP 414
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 474 LYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPL-EFCQLNYLEILDLSENNISGS 532
LY+ DN + P +L +L ++ + SN L G +P+ F L L +LDL N ++
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-V 102
Query: 533 LPS 535
LPS
Sbjct: 103 LPS 105
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 22/131 (16%)
Query: 708 PQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNA---- 763
P + L + L S N+ + P SF L+ ++ L V +N ++ L+E NA
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV----MNSQV--SLIERNAFDGL 265
Query: 764 --LVVFSVAHNNLSAAERN---PGPYCLKTWPCNGDYQCRIDCSTMYNGEGHCKYVTAIY 818
LV ++AHNNLS+ + P Y ++ + + C DC ++ + Y
Sbjct: 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC--DCDILW-----LAWWLREY 318
Query: 819 APHTCICKYKC 829
P C +C
Sbjct: 319 IPTNSTCCGRC 329
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 700 NKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNL 750
N++T P L N++ L F+ N LT + F L Q+ LD++ N+L
Sbjct: 43 NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 709 QIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVE-LNALVVF 767
Q+ L +++ LN S+N G+ +F Q+E LDV+ +L+ K P + L+ L V
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 768 SVAH 771
+++H
Sbjct: 430 NLSH 433
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 713 LTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN 751
L ++ LN N ++ V+P SF +LN + SL+++ N N
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 219 DEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLT------GNISS-SPLIHLTSIERLFL 271
D GL L L+ L++G N + L +L IS PL LT ++ L+L
Sbjct: 121 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACLTKLQNLYL 180
Query: 272 SYNQFQIPFSLEPFFNLSKLKVFSGE 297
S N +L NL L++FS E
Sbjct: 181 SKNHISDLRALCGLKNLDVLELFSQE 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,006,372
Number of Sequences: 62578
Number of extensions: 992224
Number of successful extensions: 2714
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1994
Number of HSP's gapped (non-prelim): 513
length of query: 829
length of database: 14,973,337
effective HSP length: 107
effective length of query: 722
effective length of database: 8,277,491
effective search space: 5976348502
effective search space used: 5976348502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)