Query 037427
Match_columns 829
No_of_seqs 904 out of 4854
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 12:07:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-68 2.3E-73 656.6 47.2 567 22-786 27-595 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.2E-58 9.1E-63 563.1 37.3 514 69-777 94-610 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.7E-39 1E-43 332.0 5.9 352 366-781 80-435 (873)
4 KOG4194 Membrane glycoprotein 100.0 4E-38 8.7E-43 325.1 5.3 371 315-748 78-449 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 8.6E-41 1.9E-45 330.5 -17.7 489 98-775 45-541 (565)
6 KOG0618 Serine/threonine phosp 100.0 1.4E-36 3E-41 330.7 -6.0 417 128-626 23-443 (1081)
7 KOG0472 Leucine-rich repeat pr 100.0 3.1E-37 6.8E-42 305.4 -15.7 478 70-626 47-541 (565)
8 KOG0618 Serine/threonine phosp 100.0 1.4E-35 3.1E-40 322.8 -6.2 416 130-626 2-420 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.4E-32 3.1E-37 285.7 -2.5 362 317-751 9-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2.6E-32 5.5E-37 283.8 -3.2 344 331-746 47-394 (1255)
11 PLN03210 Resistant to P. syrin 99.9 2.5E-22 5.5E-27 246.6 28.0 342 331-749 550-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 3.2E-22 7E-27 245.7 27.7 342 355-773 549-904 (1153)
13 PRK15387 E3 ubiquitin-protein 99.9 1.4E-21 3E-26 222.0 17.7 226 445-760 242-467 (788)
14 PRK15387 E3 ubiquitin-protein 99.9 1.7E-21 3.6E-26 221.4 18.3 263 422-781 202-464 (788)
15 KOG4237 Extracellular matrix p 99.9 1.7E-24 3.7E-29 215.2 -5.2 388 340-772 68-498 (498)
16 KOG4237 Extracellular matrix p 99.9 5.5E-24 1.2E-28 211.6 -2.6 397 315-748 67-498 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 3.6E-19 7.9E-24 204.0 14.2 246 422-751 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.7E-19 5.8E-24 205.1 12.3 250 446-780 221-475 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.6E-19 3.5E-24 193.2 -0.8 83 691-773 222-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 6.9E-18 1.5E-22 180.6 1.6 280 319-624 2-318 (319)
21 KOG0617 Ras suppressor protein 99.7 1.4E-18 3E-23 153.5 -3.4 188 533-780 26-217 (264)
22 KOG0617 Ras suppressor protein 99.6 6.1E-18 1.3E-22 149.4 -4.4 167 561-785 29-196 (264)
23 PLN03150 hypothetical protein; 99.5 1E-13 2.3E-18 159.1 14.7 153 19-211 367-526 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 1.8E-13 4E-18 143.4 -4.2 171 544-777 79-249 (722)
25 COG4886 Leucine-rich repeat (L 99.3 7.6E-12 1.6E-16 137.8 7.9 199 497-757 97-296 (394)
26 PLN03150 hypothetical protein; 99.2 3.8E-11 8.2E-16 138.1 8.5 113 614-779 419-532 (623)
27 COG4886 Leucine-rich repeat (L 99.2 4.7E-11 1E-15 131.5 8.9 201 473-735 97-298 (394)
28 KOG0532 Leucine-rich repeat (L 99.2 6.8E-13 1.5E-17 139.2 -5.8 191 472-749 78-271 (722)
29 KOG1259 Nischarin, modulator o 99.2 6.1E-12 1.3E-16 121.7 0.8 85 691-778 330-415 (490)
30 KOG3207 Beta-tubulin folding c 99.1 3.2E-11 6.9E-16 123.2 0.4 138 466-626 118-259 (505)
31 KOG1909 Ran GTPase-activating 99.0 2.1E-11 4.6E-16 121.2 -3.3 96 94-189 26-133 (382)
32 PF14580 LRR_9: Leucine-rich r 99.0 3.7E-10 8E-15 105.9 5.0 111 122-240 15-126 (175)
33 PF14580 LRR_9: Leucine-rich r 99.0 6.4E-10 1.4E-14 104.3 6.6 126 98-234 19-147 (175)
34 KOG1909 Ran GTPase-activating 99.0 6E-11 1.3E-15 118.0 -1.6 175 441-626 26-226 (382)
35 KOG3207 Beta-tubulin folding c 99.0 8.6E-11 1.9E-15 120.1 -0.8 182 316-530 122-314 (505)
36 KOG0531 Protein phosphatase 1, 99.0 9.4E-11 2E-15 129.1 -0.8 266 422-779 50-322 (414)
37 KOG1259 Nischarin, modulator o 98.9 2.2E-10 4.7E-15 111.1 1.1 62 561-625 303-364 (490)
38 KOG4658 Apoptotic ATPase [Sign 98.8 3.7E-09 8.1E-14 124.1 5.8 104 127-236 546-651 (889)
39 PF13855 LRR_8: Leucine rich r 98.8 2.7E-09 5.9E-14 82.1 3.0 59 691-749 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 2.7E-09 5.7E-14 82.2 2.9 61 714-774 1-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.8 4.7E-09 1E-13 123.3 6.0 129 68-211 523-653 (889)
42 PF08263 LRRNT_2: Leucine rich 98.8 1.1E-08 2.4E-13 71.7 4.4 40 23-64 2-43 (43)
43 KOG0531 Protein phosphatase 1, 98.7 1.6E-09 3.5E-14 119.4 -0.9 195 420-626 71-268 (414)
44 COG5238 RNA1 Ran GTPase-activa 98.4 3.7E-08 8E-13 94.7 -1.4 237 97-378 29-286 (388)
45 KOG2120 SCF ubiquitin ligase, 98.4 2.1E-08 4.6E-13 97.7 -3.3 203 128-375 138-349 (419)
46 KOG4579 Leucine-rich repeat (L 98.3 1.7E-08 3.6E-13 87.0 -4.4 90 691-783 78-167 (177)
47 KOG1859 Leucine-rich repeat pr 98.3 1.5E-08 3.3E-13 109.9 -5.9 182 92-304 103-294 (1096)
48 KOG1859 Leucine-rich repeat pr 98.3 3.4E-08 7.5E-13 107.2 -4.4 124 422-552 165-291 (1096)
49 KOG2120 SCF ubiquitin ligase, 98.2 3.4E-08 7.4E-13 96.2 -6.8 65 262-327 311-375 (419)
50 KOG4579 Leucine-rich repeat (L 98.0 4.6E-07 1E-11 78.3 -2.8 68 691-760 101-168 (177)
51 KOG2982 Uncharacterized conser 98.0 1.3E-06 2.8E-11 85.5 -0.3 84 492-575 70-156 (418)
52 KOG2982 Uncharacterized conser 98.0 2.8E-06 6.1E-11 83.1 1.9 200 420-619 70-285 (418)
53 COG5238 RNA1 Ran GTPase-activa 98.0 6.2E-07 1.3E-11 86.5 -3.0 47 383-434 87-133 (388)
54 PRK15386 type III secretion pr 97.9 3.3E-05 7E-10 81.8 7.8 73 539-625 51-124 (426)
55 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.6E-10 56.4 3.1 36 715-751 2-37 (44)
56 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.6E-10 56.4 3.1 38 691-729 2-39 (44)
57 KOG1644 U2-associated snRNP A' 97.6 0.00015 3.3E-09 67.6 6.1 11 224-234 137-147 (233)
58 KOG1644 U2-associated snRNP A' 97.5 0.0001 2.3E-09 68.6 5.0 108 97-211 41-151 (233)
59 KOG3665 ZYG-1-like serine/thre 97.5 5.6E-05 1.2E-09 87.1 2.6 157 126-294 122-280 (699)
60 PRK15386 type III secretion pr 97.4 0.0006 1.3E-08 72.4 9.0 31 691-724 157-187 (426)
61 KOG4341 F-box protein containi 97.4 1.3E-05 2.9E-10 82.3 -3.4 64 336-399 369-437 (483)
62 KOG4341 F-box protein containi 97.3 1.5E-05 3.3E-10 82.0 -4.4 39 337-375 292-331 (483)
63 KOG2739 Leucine-rich acidic nu 97.1 0.00028 6.1E-09 68.8 2.9 86 97-189 42-129 (260)
64 KOG3665 ZYG-1-like serine/thre 97.1 0.00036 7.8E-09 80.6 3.9 140 97-243 121-266 (699)
65 PF13306 LRR_5: Leucine rich r 96.8 0.0027 5.8E-08 57.3 6.6 11 361-371 9-19 (129)
66 KOG2123 Uncharacterized conser 96.8 4.4E-05 9.5E-10 74.3 -5.3 84 97-189 18-101 (388)
67 PF13306 LRR_5: Leucine rich r 96.8 0.003 6.5E-08 57.0 6.7 62 558-621 5-66 (129)
68 KOG2739 Leucine-rich acidic nu 96.7 0.00042 9.1E-09 67.6 0.4 86 124-213 41-129 (260)
69 KOG2123 Uncharacterized conser 95.9 0.00038 8.1E-09 68.0 -5.0 80 515-595 39-123 (388)
70 PF00560 LRR_1: Leucine Rich R 95.6 0.0046 1E-07 35.9 0.5 12 740-751 2-13 (22)
71 PF00560 LRR_1: Leucine Rich R 95.3 0.0056 1.2E-07 35.6 0.3 19 716-735 2-20 (22)
72 KOG1947 Leucine rich repeat pr 95.3 0.0026 5.7E-08 72.2 -2.1 35 567-601 403-439 (482)
73 KOG4308 LRR-containing protein 93.9 0.00059 1.3E-08 75.4 -11.1 69 94-162 111-184 (478)
74 KOG0473 Leucine-rich repeat pr 92.9 0.0043 9.3E-08 59.2 -5.5 83 690-775 42-124 (326)
75 KOG1947 Leucine rich repeat pr 92.8 0.02 4.4E-07 64.9 -1.5 17 561-577 358-374 (482)
76 KOG4308 LRR-containing protein 91.5 0.001 2.2E-08 73.6 -13.5 38 316-353 263-304 (478)
77 PF13504 LRR_7: Leucine rich r 91.2 0.14 3.1E-06 27.5 1.4 11 716-726 3-13 (17)
78 KOG0473 Leucine-rich repeat pr 90.9 0.0066 1.4E-07 58.0 -6.7 86 95-189 39-124 (326)
79 smart00369 LRR_TYP Leucine-ric 87.9 0.44 9.4E-06 28.9 2.0 13 715-727 3-15 (26)
80 smart00370 LRR Leucine-rich re 87.9 0.44 9.4E-06 28.9 2.0 13 715-727 3-15 (26)
81 KOG3864 Uncharacterized conser 86.1 0.18 3.9E-06 47.7 -0.6 81 128-209 103-185 (221)
82 smart00370 LRR Leucine-rich re 85.8 0.57 1.2E-05 28.3 1.7 19 737-756 1-19 (26)
83 smart00369 LRR_TYP Leucine-ric 85.8 0.57 1.2E-05 28.3 1.7 19 737-756 1-19 (26)
84 PF13516 LRR_6: Leucine Rich r 85.7 0.38 8.2E-06 28.5 0.8 21 176-196 2-22 (24)
85 PF13516 LRR_6: Leucine Rich r 81.8 0.44 9.6E-06 28.2 -0.0 18 565-582 2-19 (24)
86 KOG3864 Uncharacterized conser 73.1 0.54 1.2E-05 44.6 -2.1 80 422-501 102-184 (221)
87 smart00365 LRR_SD22 Leucine-ri 72.8 2.7 5.9E-05 25.5 1.6 14 738-751 2-15 (26)
88 KOG4242 Predicted myosin-I-bin 71.7 21 0.00045 38.8 8.8 21 389-409 215-235 (553)
89 smart00364 LRR_BAC Leucine-ric 69.1 3.4 7.3E-05 25.0 1.4 13 715-727 3-15 (26)
90 KOG4242 Predicted myosin-I-bin 69.1 12 0.00026 40.5 6.4 60 447-506 415-481 (553)
91 smart00368 LRR_RI Leucine rich 60.0 8.1 0.00017 23.8 2.0 13 177-189 3-15 (28)
92 KOG3763 mRNA export factor TAP 52.8 6.8 0.00015 43.2 1.3 65 688-752 216-284 (585)
93 KOG3763 mRNA export factor TAP 34.3 20 0.00044 39.7 1.4 16 262-277 216-231 (585)
94 smart00367 LRR_CC Leucine-rich 32.1 48 0.001 19.8 2.2 10 177-186 3-12 (26)
95 TIGR00864 PCC polycystin catio 25.1 40 0.00087 45.2 1.9 32 696-727 1-32 (2740)
96 TIGR00864 PCC polycystin catio 21.5 54 0.0012 44.1 2.1 33 720-752 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-68 Score=656.64 Aligned_cols=567 Identities=32% Similarity=0.484 Sum_probs=348.2
Q ss_pred hHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCcccccccccccCcccccCCCCCc
Q 037427 22 LEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLE 101 (829)
Q Consensus 22 ~~~~~~~ll~~k~~~~~~~~~l~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~ 101 (829)
.++|++||++||+++.++...+.+|. ..++||.|+||+|++ .++|+.|+|+++++. +. + +..|..+++|+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~---~~--~-~~~~~~l~~L~ 96 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGKNIS---GK--I-SSAIFRLPYIQ 96 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCCCcc---cc--C-ChHHhCCCCCC
Confidence 46899999999999976555788996 467899999999985 579999999887541 11 1 22344445555
Q ss_pred EEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhc-CCCCCCEEEcCCCcCCccCCccccccCCCCCCE
Q 037427 102 TLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLA-GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLED 180 (829)
Q Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~ 180 (829)
+|+|++|.+.+ .+|..+. ++++|++|+|++|.+++.+| .+.+++|++
T Consensus 97 ~L~Ls~n~~~~----------------------------~ip~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~l~~L~~ 144 (968)
T PLN00113 97 TINLSNNQLSG----------------------------PIPDDIFTTSSSLRYLNLSNNNFTGSIP----RGSIPNLET 144 (968)
T ss_pred EEECCCCccCC----------------------------cCChHHhccCCCCCEEECcCCccccccC----ccccCCCCE
Confidence 55555554444 4443322 45555555555555544444 133444555
Q ss_pred EecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccC-CccCcccccccCCCC
Q 037427 181 LTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP-CLYLNQLTGNISSSP 259 (829)
Q Consensus 181 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p-~l~~~~~~g~i~~~~ 259 (829)
|+|++|.+++.+|..++++++|++|++++|.+.+.+|. .++++++|++|++++|.+.+.+| .+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~L~~n~l~~~~p~~l------------- 208 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN---SLTNLTSLEFLTLASNQLVGQIPREL------------- 208 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCCh---hhhhCcCCCeeeccCCCCcCcCChHH-------------
Confidence 55555555444445555555555555555555544444 44455555555555555444433 22
Q ss_pred CCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCC
Q 037427 260 LIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQH 339 (829)
Q Consensus 260 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~ 339 (829)
+++++|++|++++|.+.+.+|. .++++++|+ +|++++|.+.+.+|..+..++
T Consensus 209 -~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~--------------------------~L~L~~n~l~~~~p~~l~~l~ 260 (968)
T PLN00113 209 -GQMKSLKWIYLGYNNLSGEIPY-EIGGLTSLN--------------------------HLDLVYNNLTGPIPSSLGNLK 260 (968)
T ss_pred -cCcCCccEEECcCCccCCcCCh-hHhcCCCCC--------------------------EEECcCceeccccChhHhCCC
Confidence 3444444444444443322221 111221111 111112222223334444444
Q ss_pred CcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccC
Q 037427 340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMG 419 (829)
Q Consensus 340 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~ 419 (829)
+|+.|++++|.+.+.+|.+ +.++++|++|++++|.+.+.+|..+..+
T Consensus 261 ~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-------------------------------- 307 (968)
T PLN00113 261 NLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSGEIPELVIQL-------------------------------- 307 (968)
T ss_pred CCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeeccCCChhHcCC--------------------------------
Confidence 5555555555554444444 2334444444444443333322222222
Q ss_pred CCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEE
Q 037427 420 CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIM 499 (829)
Q Consensus 420 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 499 (829)
++|++|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|+
T Consensus 308 -~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 386 (968)
T PLN00113 308 -QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386 (968)
T ss_pred -CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence 3444444444444444444444455555555555555555555555555555555555555555555555555555555
Q ss_pred ccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCC
Q 037427 500 MASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG 579 (829)
Q Consensus 500 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 579 (829)
+++|++.+.+|..+..+++|+.|++++|+++ +.+|.. +..++.|+.|++++|.+++
T Consensus 387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~-----------------------~~~p~~-~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFS-----------------------GELPSE-FTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred CcCCEecccCCHHHhCCCCCCEEECcCCEee-----------------------eECChh-HhcCCCCCEEECcCCcccC
Confidence 5555555555555555555555555555444 444444 6677777888888888887
Q ss_pred cchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccc
Q 037427 580 NIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTT 659 (829)
Q Consensus 580 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (829)
.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+.++.
T Consensus 443 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~---------------------- 499 (968)
T PLN00113 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS---------------------- 499 (968)
T ss_pred ccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh----------------------
Confidence 777777778888888888888887777655 457889999999999888887666544
Q ss_pred eecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCcccccccccc
Q 037427 660 YFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQ 739 (829)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 739 (829)
+|+.|+|++|++++.+|..++.+++|++|+|++|.+++.+|..|+.+++
T Consensus 500 -------------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 548 (968)
T PLN00113 500 -------------------------------ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548 (968)
T ss_pred -------------------------------ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCccc
Confidence 7888999999999999999999999999999999999999999999999
Q ss_pred CCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCCCCCCC
Q 037427 740 VESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCL 786 (829)
Q Consensus 740 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~ 786 (829)
|+.|||++|+++|.+|..+..+++|+++++++|+++|.+|..++|..
T Consensus 549 L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~ 595 (968)
T PLN00113 549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLA 595 (968)
T ss_pred CCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcc
Confidence 99999999999999999999999999999999999999999888753
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.2e-58 Score=563.08 Aligned_cols=514 Identities=32% Similarity=0.506 Sum_probs=354.0
Q ss_pred cEEEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcC
Q 037427 69 RVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAG 148 (829)
Q Consensus 69 ~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 148 (829)
+++.|+|+++.+ . +.++...+..+++||+|+|++|++++.+|. ..+++|++|+|++|.+.+.+|..+++
T Consensus 94 ~L~~L~Ls~n~~---~--~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~------~~l~~L~~L~Ls~n~~~~~~p~~~~~ 162 (968)
T PLN00113 94 YIQTINLSNNQL---S--GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR------GSIPNLETLDLSNNMLSGEIPNDIGS 162 (968)
T ss_pred CCCEEECCCCcc---C--CcCChHHhccCCCCCEEECcCCccccccCc------cccCCCCEEECcCCcccccCChHHhc
Confidence 678899998865 2 234555667899999999999999887773 56889999999999998888989999
Q ss_pred CCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCC
Q 037427 149 LSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGH 228 (829)
Q Consensus 149 L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~ 228 (829)
+++|++|+|++|.+.+.+| ..++++++|++|+|++|.+.+.+|..++++++|++|++++|.+.+.+|. .++++++
T Consensus 163 l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~ 237 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIP--NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY---EIGGLTS 237 (968)
T ss_pred CCCCCEEECccCcccccCC--hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh---hHhcCCC
Confidence 9999999999999888877 7788888899999988888888888888888888888888888887777 6777888
Q ss_pred CcEEECCCccCccccC-CccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCC
Q 037427 229 LQELHMGGNDLRGTLP-CLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPES 307 (829)
Q Consensus 229 L~~L~L~~n~l~g~~p-~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 307 (829)
|++|++++|.+++.+| .+ .++++|+.|++++|.+.
T Consensus 238 L~~L~L~~n~l~~~~p~~l--------------~~l~~L~~L~L~~n~l~------------------------------ 273 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSL--------------GNLKNLQYLFLYQNKLS------------------------------ 273 (968)
T ss_pred CCEEECcCceeccccChhH--------------hCCCCCCEEECcCCeee------------------------------
Confidence 8888888887776655 33 55666666666655543
Q ss_pred CCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCC
Q 037427 308 SHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPH 387 (829)
Q Consensus 308 ~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 387 (829)
+.+|.++..+++|++|++++|.+.+.+|.+ +.++++|++|++++|.+++..+..+..+
T Consensus 274 ---------------------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l 331 (968)
T PLN00113 274 ---------------------GPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKIPVALTSL 331 (968)
T ss_pred ---------------------ccCchhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccCCcCChhHhcC
Confidence 345566778889999999999999999987 6789999999999999988777777777
Q ss_pred CCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCC
Q 037427 388 WHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSN 467 (829)
Q Consensus 388 ~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 467 (829)
++|+.|++++|.+.+.+|.. +..+++|+.|++++|++++.+|..+..
T Consensus 332 ~~L~~L~L~~n~l~~~~p~~---------------------------------l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIPKN---------------------------------LGKHNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred CCCCEEECcCCCCcCcCChH---------------------------------HhCCCCCcEEECCCCeeEeeCChhHhC
Confidence 66666666666666555544 344445555555555555555555555
Q ss_pred CCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEE
Q 037427 468 CSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVH 546 (829)
Q Consensus 468 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~ 546 (829)
+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..++.|+.|++++|.+++.+|..+ .+++|+.|+
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 458 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEE
Confidence 5566666666666666666666666666666666666666666666666666666666666665444322 233333333
Q ss_pred ccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCc
Q 037427 547 LSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLF 626 (829)
Q Consensus 547 L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 626 (829)
+++|++.+.+ |..+ ..++|+.|++++|++++.+|..+..+++|+.|++++|++.
T Consensus 459 L~~n~~~~~~-------------------------p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 512 (968)
T PLN00113 459 LARNKFFGGL-------------------------PDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512 (968)
T ss_pred CcCceeeeec-------------------------Cccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce
Confidence 3333333333 3322 1234455555555555455555555555555555555555
Q ss_pred cCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCC
Q 037427 627 GQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEI 706 (829)
Q Consensus 627 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~i 706 (829)
+.+|..+..+. +|++|+|++|.++|.+
T Consensus 513 ~~~p~~~~~l~-----------------------------------------------------~L~~L~Ls~N~l~~~~ 539 (968)
T PLN00113 513 GEIPDELSSCK-----------------------------------------------------KLVSLDLSHNQLSGQI 539 (968)
T ss_pred eeCChHHcCcc-----------------------------------------------------CCCEEECCCCcccccC
Confidence 55555444333 5566666666666677
Q ss_pred CcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCc-ceee
Q 037427 707 PPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNN-LSAA 777 (829)
Q Consensus 707 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~-l~g~ 777 (829)
|..++.+++|+.|+|++|++++.+|..+.++++|+.|++++|+++|.+|.. ..+..+....+.+|+ ++|.
T Consensus 540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~ 610 (968)
T PLN00113 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGG 610 (968)
T ss_pred ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCC
Confidence 777777777777777777777777777777777777777777777777754 223344445556664 4443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-39 Score=332.01 Aligned_cols=352 Identities=22% Similarity=0.227 Sum_probs=295.6
Q ss_pred CCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCcccccccc
Q 037427 366 LSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLR 445 (829)
Q Consensus 366 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 445 (829)
-+.|++++|++..+.+..|.++++|+++++.+|.++ .||..... ..+|+.|+|.+|.|+..-.+.+..++
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~---------sghl~~L~L~~N~I~sv~se~L~~l~ 149 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE---------SGHLEKLDLRHNLISSVTSEELSALP 149 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc---------ccceeEEeeeccccccccHHHHHhHh
Confidence 445666666666655555666666666666666665 45543332 23688899999988877778888899
Q ss_pred CCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCC
Q 037427 446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLS 525 (829)
Q Consensus 446 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 525 (829)
.|+.|||+.|.++...-..|..-.++++|+|++|+|+..-...|..+.+|.+|.|++|+++...+..|.++++|+.|||.
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 99999999999986555677777889999999999998888889999999999999999998888889999999999999
Q ss_pred CCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCccccc
Q 037427 526 ENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE 604 (829)
Q Consensus 526 ~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 604 (829)
.|+|.-.--..+ ++++|+.|.|..|.+. .+..++|..+.++++|+|+.|++...-..|+-++++|+.|++++|.|...
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence 999873322333 8899999999999994 56667799999999999999999988889999999999999999999988
Q ss_pred CCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeee
Q 037427 605 VPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSY 684 (829)
Q Consensus 605 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (829)
-++.+...++|++|||++|+|+..-++.|..++
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~----------------------------------------------- 341 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS----------------------------------------------- 341 (873)
T ss_pred ecchhhhcccceeEeccccccccCChhHHHHHH-----------------------------------------------
Confidence 889999999999999999999866665555444
Q ss_pred cCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccc---cccccccCCeeecCCCcCcccCCcccccC
Q 037427 685 KGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPV---SFSNLNQVESLDVSHNNLNGKIPPQLVEL 761 (829)
Q Consensus 685 ~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~LdLs~N~l~~~ip~~l~~l 761 (829)
.|++|+|++|+++..-...|..+++|+.|||++|.++..|-+ .|..|++|+.|+|.+|+|....-.+|..+
T Consensus 342 ------~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl 415 (873)
T KOG4194|consen 342 ------QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGL 415 (873)
T ss_pred ------HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccC
Confidence 789999999999977788899999999999999999987754 47889999999999999996666889999
Q ss_pred CCCcEEeccCCcceeecCCC
Q 037427 762 NALVVFSVAHNNLSAAERNP 781 (829)
Q Consensus 762 ~~L~~L~ls~N~l~g~ip~~ 781 (829)
..|++|||.+|.+...-|..
T Consensus 416 ~~LE~LdL~~NaiaSIq~nA 435 (873)
T KOG4194|consen 416 EALEHLDLGDNAIASIQPNA 435 (873)
T ss_pred cccceecCCCCcceeecccc
Confidence 99999999999999887753
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4e-38 Score=325.12 Aligned_cols=371 Identities=21% Similarity=0.268 Sum_probs=319.8
Q ss_pred cCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEE
Q 037427 315 FQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALH 394 (829)
Q Consensus 315 ~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 394 (829)
..-+.|++++|++...-+..|.++++|+++++..|.++ .||.. .....+|+.|+|.+|.|+......+..++.|++||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRF-GHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccc-cccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 45677999999999999999999999999999999998 89973 33445699999999999988888899999999999
Q ss_pred ccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEE
Q 037427 395 VSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGL 474 (829)
Q Consensus 395 ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 474 (829)
|+.|.++ .+| ...|..-.++++|+|++|.|+......|..+.+|.+|.|+.|+++...+..|.++++|+.|
T Consensus 156 LSrN~is-~i~--------~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 156 LSRNLIS-EIP--------KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred hhhchhh-ccc--------CCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence 9999987 333 2333334689999999999998888889999999999999999997777889999999999
Q ss_pred ECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCccc
Q 037427 475 YMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLY 553 (829)
Q Consensus 475 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~ 553 (829)
+|..|+|.-.--..|.++++|+.|.+..|++...-...|..+.++++|+|+.|+++..-..++ ++++|+.|+++.|.+.
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence 999999984435689999999999999999998888889999999999999999986655555 9999999999999996
Q ss_pred CcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCc
Q 037427 554 GPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCL 633 (829)
Q Consensus 554 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 633 (829)
.. ..+.+..+++|++|||++|+|+...+..|..+..|++|+|++|.++..-...|..+++|++|||++|.+++.+-+.-
T Consensus 307 ri-h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa 385 (873)
T KOG4194|consen 307 RI-HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA 385 (873)
T ss_pred ee-ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch
Confidence 54 44448889999999999999999999999999999999999999997777889999999999999999987665421
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccC
Q 037427 634 DNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKL 713 (829)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l 713 (829)
.. | ..+++|+.|+|.+|++..+...+|.++
T Consensus 386 ~~------------------------------------------------f--~gl~~LrkL~l~gNqlk~I~krAfsgl 415 (873)
T KOG4194|consen 386 VA------------------------------------------------F--NGLPSLRKLRLTGNQLKSIPKRAFSGL 415 (873)
T ss_pred hh------------------------------------------------h--ccchhhhheeecCceeeecchhhhccC
Confidence 10 1 235689999999999996666889999
Q ss_pred CCCCEEECCCCCCCCCccccccccccCCeeecCCC
Q 037427 714 TNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHN 748 (829)
Q Consensus 714 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N 748 (829)
.+|+.|||.+|.|..+.|.+|..+ .|+.|-+..-
T Consensus 416 ~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 416 EALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred cccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 999999999999999999999988 8888877543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.6e-41 Score=330.54 Aligned_cols=489 Identities=25% Similarity=0.352 Sum_probs=298.4
Q ss_pred CCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCC
Q 037427 98 QQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTN 177 (829)
Q Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~ 177 (829)
..|+.+++++|.+....++ +.++..|.+|++++|.+. ..|++++.+..++.|+.++|+++ .+| +.+..+.+
T Consensus 45 v~l~~lils~N~l~~l~~d-----l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp--~~i~s~~~ 115 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLRED-----LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELP--EQIGSLIS 115 (565)
T ss_pred cchhhhhhccCchhhccHh-----hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hcc--HHHhhhhh
Confidence 3467788888888766654 788888999999999887 56788899999999999999887 666 78888888
Q ss_pred CCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccCC
Q 037427 178 LEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISS 257 (829)
Q Consensus 178 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~ 257 (829)
|+.|+.++|.+. ..|++++.+..|..++..+|+++. .|. ++..+.+|..|++.+|++....|..
T Consensus 116 l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~---~~~~~~~l~~l~~~~n~l~~l~~~~----------- 179 (565)
T KOG0472|consen 116 LVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPE---DMVNLSKLSKLDLEGNKLKALPENH----------- 179 (565)
T ss_pred hhhhhcccccee-ecCchHHHHhhhhhhhcccccccc-Cch---HHHHHHHHHHhhccccchhhCCHHH-----------
Confidence 888888888877 455677888888888888888773 454 5777777888888888776332222
Q ss_pred CCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhC
Q 037427 258 SPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYN 337 (829)
Q Consensus 258 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~ 337 (829)
-+++.|++||...|-+. .+|.+ ++.+.+|+.|++..|++...+ .|.+
T Consensus 180 ---i~m~~L~~ld~~~N~L~-tlP~~-lg~l~~L~~LyL~~Nki~~lP----------------------------ef~g 226 (565)
T KOG0472|consen 180 ---IAMKRLKHLDCNSNLLE-TLPPE-LGGLESLELLYLRRNKIRFLP----------------------------EFPG 226 (565)
T ss_pred ---HHHHHHHhcccchhhhh-cCChh-hcchhhhHHHHhhhcccccCC----------------------------CCCc
Confidence 34677777777776654 34432 555555555555555443222 2444
Q ss_pred CCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccc
Q 037427 338 QHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLA 417 (829)
Q Consensus 338 ~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~ 417 (829)
+..|.+++++.|++. .+|+...++++++.+||+..|++. .+|++
T Consensus 227 cs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-------------------------e~Pde---------- 270 (565)
T KOG0472|consen 227 CSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-------------------------EVPDE---------- 270 (565)
T ss_pred cHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-------------------------cCchH----------
Confidence 444555555555554 455544444444444443333332 23333
Q ss_pred cCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCC---C
Q 037427 418 MGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLS---S 494 (829)
Q Consensus 418 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~---~ 494 (829)
+..+.+|+.||+++|.++ .+|..++++ .|+.|.+.+|.+.. +-..+-+.. -
T Consensus 271 -----------------------~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~v 324 (565)
T KOG0472|consen 271 -----------------------ICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEV 324 (565)
T ss_pred -----------------------HHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHH
Confidence 333344444444444444 233344444 44555555554431 111110000 0
Q ss_pred CCEEE--ccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCC--CCccEE
Q 037427 495 LNDIM--MASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNR--SSIVTL 570 (829)
Q Consensus 495 L~~L~--l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l--~~L~~L 570 (829)
|++|. +..-.++.. +. +... . .....+..|+.....+.+.|++++-++ ..+|...|... .-....
T Consensus 325 LKyLrs~~~~dglS~s--e~-~~e~---~----~t~~~~~~~~~~~~i~tkiL~~s~~ql-t~VPdEVfea~~~~~Vt~V 393 (565)
T KOG0472|consen 325 LKYLRSKIKDDGLSQS--EG-GTET---A----MTLPSESFPDIYAIITTKILDVSDKQL-TLVPDEVFEAAKSEIVTSV 393 (565)
T ss_pred HHHHHHhhccCCCCCC--cc-cccc---c----CCCCCCcccchhhhhhhhhhccccccc-ccCCHHHHHHhhhcceEEE
Confidence 00000 000000000 00 0000 0 000011122222333445555555554 34555433322 125677
Q ss_pred EccCCcCCCcchhhhhcCCCCCE-EEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCC
Q 037427 571 DLSYNSFSGNIPYWIERLIRLRY-LILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSA 649 (829)
Q Consensus 571 ~Ls~n~l~~~~~~~l~~l~~L~~-L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~ 649 (829)
+++.|++. ++|..+..+..+.. +.+++|.+. .+|..++.+++|..|+|++|.+. .+|..++.+.
T Consensus 394 nfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv------------ 458 (565)
T KOG0472|consen 394 NFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV------------ 458 (565)
T ss_pred ecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhh------------
Confidence 77777776 56666655555444 445555554 77777888888888888877765 5665555443
Q ss_pred CCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCC
Q 037427 650 PTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGV 729 (829)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 729 (829)
.|+.||+|+|+|. .+|..+..+..|+.+-.++|++...
T Consensus 459 -----------------------------------------~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 459 -----------------------------------------RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV 496 (565)
T ss_pred -----------------------------------------hhheecccccccc-cchHHHhhHHHHHHHHhcccccccc
Confidence 6778888888887 7888888888888888888888877
Q ss_pred ccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcce
Q 037427 730 IPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775 (829)
Q Consensus 730 ~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 775 (829)
.|+.+.++.+|..|||.+|.+. .||+.++++++|++|++++|++.
T Consensus 497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 7877888999999999999888 78888899999999999999888
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-36 Score=330.72 Aligned_cols=417 Identities=26% Similarity=0.319 Sum_probs=232.6
Q ss_pred CCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEc
Q 037427 128 LKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSI 207 (829)
Q Consensus 128 L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 207 (829)
+..|+++.|.+-....+.+.+.-+|+.||+++|.+. ..| ..+..+.+|+.|.++.|.+. ..|.+..++.+|++|.|
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp--~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFP--IQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCC--chhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhee
Confidence 555555555544322333444444666666666554 334 44555555555555555554 23355555566666666
Q ss_pred ccccCccccCCCccccCCCCCCcEEECCCccCccccC-CccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhc
Q 037427 208 QNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP-CLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFF 286 (829)
Q Consensus 208 ~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p-~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~ 286 (829)
.+|.+. ..|. ++..+++|++|+++.|++. .+| .+ ..++.++.+..++|... .
T Consensus 99 ~~n~l~-~lP~---~~~~lknl~~LdlS~N~f~-~~Pl~i--------------~~lt~~~~~~~s~N~~~-----~--- 151 (1081)
T KOG0618|consen 99 KNNRLQ-SLPA---SISELKNLQYLDLSFNHFG-PIPLVI--------------EVLTAEEELAASNNEKI-----Q--- 151 (1081)
T ss_pred ccchhh-cCch---hHHhhhcccccccchhccC-CCchhH--------------HhhhHHHHHhhhcchhh-----h---
Confidence 555544 3444 4555556666666665554 333 22 34444444444444110 0
Q ss_pred CCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCC
Q 037427 287 NLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNL 366 (829)
Q Consensus 287 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L 366 (829)
..+...++.+++..+.+.+.++..+..++. .|||++|.+. ... ...+++|
T Consensus 152 ------------------------~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l 201 (1081)
T KOG0618|consen 152 ------------------------RLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANL 201 (1081)
T ss_pred ------------------------hhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccch
Confidence 001112445555555555656555555555 5777777776 222 4466777
Q ss_pred CEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccC
Q 037427 367 STLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRK 446 (829)
Q Consensus 367 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 446 (829)
+.|....|++.... ..-++++.|+.++|.++...+... | .+|+++++++|++++. |+++..+.+
T Consensus 202 ~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~p~----p-------~nl~~~dis~n~l~~l-p~wi~~~~n 265 (1081)
T KOG0618|consen 202 EVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVHPV----P-------LNLQYLDISHNNLSNL-PEWIGACAN 265 (1081)
T ss_pred hhhhhhhcccceEE----ecCcchheeeeccCcceeeccccc----c-------ccceeeecchhhhhcc-hHHHHhccc
Confidence 77777777665321 123456677777776653222111 1 2677777777777754 377777777
Q ss_pred CcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCC-CCEEeCC
Q 037427 447 LARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNY-LEILDLS 525 (829)
Q Consensus 447 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls 525 (829)
|+.++..+|+++ .+|..+...++|+.|.+.+|.+. -+|.....+++|++|+|..|++....+..+..+.. |..|+.+
T Consensus 266 le~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 266 LEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVS 343 (1081)
T ss_pred ceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhh
Confidence 777777777775 56666667777777777777776 55666666777777777777776443333333333 5666666
Q ss_pred CCcCcccCCCCC--CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccc
Q 037427 526 ENNISGSLPSCS--SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG 603 (829)
Q Consensus 526 ~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 603 (829)
.|++. ..|... ..+.|+.|++.+|.++...-.- +.+.++|++|+|++|++.......+.++..|++|+|++|+++
T Consensus 344 ~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~- 420 (1081)
T KOG0618|consen 344 SNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT- 420 (1081)
T ss_pred hcccc-ccccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-
Confidence 66665 233222 4455666666666654432222 555556666666666655433444555555666666666655
Q ss_pred cCCcccCCCCCCCEEECcCCcCc
Q 037427 604 EVPNQLCGLKQLRLIDLSNNNLF 626 (829)
Q Consensus 604 ~~~~~l~~l~~L~~L~Ls~N~l~ 626 (829)
.+|..+..++.|++|...+|++.
T Consensus 421 ~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 421 TLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred hhhHHHHhhhhhHHHhhcCCcee
Confidence 45555555555555555555543
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.1e-37 Score=305.35 Aligned_cols=478 Identities=26% Similarity=0.317 Sum_probs=302.7
Q ss_pred EEEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCC
Q 037427 70 VKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGL 149 (829)
Q Consensus 70 v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L 149 (829)
...+.++++.+. .-...+..+..|.+|++++|++....+. ++.+..++.|+.++|.++ .+|..++.+
T Consensus 47 l~~lils~N~l~-------~l~~dl~nL~~l~vl~~~~n~l~~lp~a-----ig~l~~l~~l~vs~n~ls-~lp~~i~s~ 113 (565)
T KOG0472|consen 47 LQKLILSHNDLE-------VLREDLKNLACLTVLNVHDNKLSQLPAA-----IGELEALKSLNVSHNKLS-ELPEQIGSL 113 (565)
T ss_pred hhhhhhccCchh-------hccHhhhcccceeEEEeccchhhhCCHH-----HHHHHHHHHhhcccchHh-hccHHHhhh
Confidence 345667766542 1234567889999999999999877664 788999999999999998 689999999
Q ss_pred CCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCC
Q 037427 150 SSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHL 229 (829)
Q Consensus 150 ~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L 229 (829)
..|+.|+.++|.+. .+| +.++.+..|+.|+..+|+++ ..|++++.+.+|..+++.+|.+....|. .-+++.|
T Consensus 114 ~~l~~l~~s~n~~~-el~--~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~----~i~m~~L 185 (565)
T KOG0472|consen 114 ISLVKLDCSSNELK-ELP--DSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN----HIAMKRL 185 (565)
T ss_pred hhhhhhhcccccee-ecC--chHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH----HHHHHHH
Confidence 99999999999998 455 68999999999999999998 5678899999999999999999855444 3448999
Q ss_pred cEEECCCccCccccC-CccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCC
Q 037427 230 QELHMGGNDLRGTLP-CLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESS 308 (829)
Q Consensus 230 ~~L~L~~n~l~g~~p-~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~ 308 (829)
++||...|-++ .+| .+ +.+.+|+.|+|..|++. ..| .|..|..|+.+..+.|.|...+.
T Consensus 186 ~~ld~~~N~L~-tlP~~l--------------g~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~lpa-- 245 (565)
T KOG0472|consen 186 KHLDCNSNLLE-TLPPEL--------------GGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEMLPA-- 245 (565)
T ss_pred Hhcccchhhhh-cCChhh--------------cchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHhhHH--
Confidence 99999999776 565 55 89999999999999987 444 48899988888888887764432
Q ss_pred CCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCC
Q 037427 309 HSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHW 388 (829)
Q Consensus 309 ~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 388 (829)
....++.++.+||+++|++. +.|..+ ..+.+|++||+++|.+++ .|..++++
T Consensus 246 ------------------------e~~~~L~~l~vLDLRdNklk-e~Pde~-clLrsL~rLDlSNN~is~-Lp~sLgnl- 297 (565)
T KOG0472|consen 246 ------------------------EHLKHLNSLLVLDLRDNKLK-EVPDEI-CLLRSLERLDLSNNDISS-LPYSLGNL- 297 (565)
T ss_pred ------------------------HHhcccccceeeeccccccc-cCchHH-HHhhhhhhhcccCCcccc-CCcccccc-
Confidence 22345666777777777776 666663 356667777777777764 45566666
Q ss_pred CCCEEEccCCcccccCchhhhhccccccccCCCcccE----EEcccc---ccc-----ccCccccccccCCcEEeccccc
Q 037427 389 HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEY----LVLSEN---SLH-----GQLFSKKNYLRKLARLHLDANY 456 (829)
Q Consensus 389 ~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~----L~L~~n---~l~-----~~~~~~~~~l~~L~~L~L~~n~ 456 (829)
.|+.|.+.+|.+.. |..++-. .....-++.|+. =.++.. .-+ .........+.+.+.|+++.-+
T Consensus 298 hL~~L~leGNPlrT-iRr~ii~---~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 298 HLKFLALEGNPLRT-IRREIIS---KGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred eeeehhhcCCchHH-HHHHHHc---ccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 67777777776541 1111110 000000000000 000000 000 0001111223344555555555
Q ss_pred CCCccCccCCCCC---CCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccC
Q 037427 457 FTGEIPKSLSNCS---RLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSL 533 (829)
Q Consensus 457 l~~~~~~~l~~l~---~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 533 (829)
++ .+|+....-. -.+..+++.|++. .+|..+..++.+.+.-+..|+..+.+|..++.+++|..|++++|.+. .+
T Consensus 374 lt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~L 450 (565)
T KOG0472|consen 374 LT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DL 450 (565)
T ss_pred cc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hc
Confidence 55 2332221111 1445555555554 44544444444333333333333355555555555555555555554 23
Q ss_pred CCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCC
Q 037427 534 PSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGL 612 (829)
Q Consensus 534 ~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 612 (829)
|..+ .+..|+.|+++.|+| ..+|.- +.....++.+-.++|++....|+.+.++.+|..|||.+|.+. .+|..++++
T Consensus 451 P~e~~~lv~Lq~LnlS~NrF-r~lP~~-~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm 527 (565)
T KOG0472|consen 451 PEEMGSLVRLQTLNLSFNRF-RMLPEC-LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM 527 (565)
T ss_pred chhhhhhhhhheeccccccc-ccchHH-HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence 3322 444555555555555 334432 333445555555666776666666777777777777777776 666677777
Q ss_pred CCCCEEECcCCcCc
Q 037427 613 KQLRLIDLSNNNLF 626 (829)
Q Consensus 613 ~~L~~L~Ls~N~l~ 626 (829)
.+|++|++++|+|.
T Consensus 528 tnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR 541 (565)
T ss_pred cceeEEEecCCccC
Confidence 77777777777775
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-35 Score=322.80 Aligned_cols=416 Identities=24% Similarity=0.312 Sum_probs=235.1
Q ss_pred EEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEccc
Q 037427 130 LLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQN 209 (829)
Q Consensus 130 ~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 209 (829)
.+|.+...+. .+|..+..-..++.|++++|.+. ..| .+.+.+..+|+.||+++|.+. ..|..+..+.+|+.|+++.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~ 77 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSR 77 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccc-cCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccch
Confidence 3566776666 46666655556888888888765 334 345666666888888888776 5667788888888888888
Q ss_pred ccCccccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCC
Q 037427 210 GRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLS 289 (829)
Q Consensus 210 n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~ 289 (829)
|.+. .+|. ++.++.+|++|.|.+|.+. .+| ..+..+++|+.|+++.|.+. .+|.- +..+.
T Consensus 78 n~i~-~vp~---s~~~~~~l~~lnL~~n~l~-~lP-------------~~~~~lknl~~LdlS~N~f~-~~Pl~-i~~lt 137 (1081)
T KOG0618|consen 78 NYIR-SVPS---SCSNMRNLQYLNLKNNRLQ-SLP-------------ASISELKNLQYLDLSFNHFG-PIPLV-IEVLT 137 (1081)
T ss_pred hhHh-hCch---hhhhhhcchhheeccchhh-cCc-------------hhHHhhhcccccccchhccC-CCchh-HHhhh
Confidence 8776 3454 6778888888888888766 333 33367777888888887775 34422 22333
Q ss_pred CCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEE
Q 037427 290 KLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTL 369 (829)
Q Consensus 290 ~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L 369 (829)
.+ +.+..++|..... ++.. .++.+++..|.+.+.++.. ...+.. .|
T Consensus 138 ~~--------------------------~~~~~s~N~~~~~----lg~~-~ik~~~l~~n~l~~~~~~~-i~~l~~--~l 183 (1081)
T KOG0618|consen 138 AE--------------------------EELAASNNEKIQR----LGQT-SIKKLDLRLNVLGGSFLID-IYNLTH--QL 183 (1081)
T ss_pred HH--------------------------HHHhhhcchhhhh----hccc-cchhhhhhhhhcccchhcc-hhhhhe--ee
Confidence 32 3333344411111 1111 1666777777777666654 233333 47
Q ss_pred EccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcE
Q 037427 370 VLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLAR 449 (829)
Q Consensus 370 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 449 (829)
+|.+|.+. ...+..+.+|+.+....|++..-. ..-++|+.|+.++|.++...+. ....+|++
T Consensus 184 dLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~-------------~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~ 245 (1081)
T KOG0618|consen 184 DLRYNEME---VLDLSNLANLEVLHCERNQLSELE-------------ISGPSLTALYADHNPLTTLDVH--PVPLNLQY 245 (1081)
T ss_pred ecccchhh---hhhhhhccchhhhhhhhcccceEE-------------ecCcchheeeeccCcceeeccc--ccccccee
Confidence 77777766 234455666666666666654210 0124566666666666522211 12345666
Q ss_pred EecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcC
Q 037427 450 LHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNI 529 (829)
Q Consensus 450 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 529 (829)
+++++|+++ .+|+++..+.+|+.++..+|.++ .+|..+....+|+.|.+..|.+. .+|.....++.|++|||..|++
T Consensus 246 ~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 246 LDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred eecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccc
Confidence 666666666 34466666666666666666664 55555555666666666666665 3444455566666666666666
Q ss_pred cccCCCCC---CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCC
Q 037427 530 SGSLPSCS---SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVP 606 (829)
Q Consensus 530 ~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 606 (829)
. .+|..+ -...|+.++.+.|++......+ =...+.|+.|.+.+|.+++..-..+.+.+.|+.|+|++|++.....
T Consensus 323 ~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~-e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa 400 (1081)
T KOG0618|consen 323 P-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYE-ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA 400 (1081)
T ss_pred c-ccchHHHhhhhHHHHHHhhhhcccccccccc-chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence 5 333322 1122445555555543221111 1233445555555555555444445555555555555555542223
Q ss_pred cccCCCCCCCEEECcCCcCc
Q 037427 607 NQLCGLKQLRLIDLSNNNLF 626 (829)
Q Consensus 607 ~~l~~l~~L~~L~Ls~N~l~ 626 (829)
..+.++..|+.|+||+|+++
T Consensus 401 s~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred HHHhchHHhHHHhcccchhh
Confidence 33445555555555555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.4e-32 Score=285.66 Aligned_cols=362 Identities=22% Similarity=0.313 Sum_probs=245.8
Q ss_pred ccEEEccCCCCC-CCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEc
Q 037427 317 LESVSLSGSDIH-ATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHV 395 (829)
Q Consensus 317 L~~L~Ls~~~l~-~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 395 (829)
.+-.++++|.+. +.+|.....++.++.|.|...++. .+|.. ++.+.+|++|.+++|++.. +...+..++.|+.+.+
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeE-L~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEE-LSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIV 85 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHH-HHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhh
Confidence 455678888887 579999999999999999999998 89998 6789999999999999874 3456777888888888
Q ss_pred cCCcccc-cCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEE
Q 037427 396 SKNFFQG-NIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGL 474 (829)
Q Consensus 396 s~n~l~~-~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 474 (829)
..|++.. .||+.+.. +..|+.|||++|++. +.|..+..-.++-.|+|++|+|..+....|-+++.|-.|
T Consensus 86 R~N~LKnsGiP~diF~---------l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFR---------LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred hccccccCCCCchhcc---------cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence 8887753 45666543 356777888888776 566677777777778888887774333455677777777
Q ss_pred ECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCc-ccCCCCC-CCCcccEEEccCCcc
Q 037427 475 YMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNIS-GSLPSCS-SHSTIQQVHLSKNML 552 (829)
Q Consensus 475 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~-~~~~L~~L~L~~n~l 552 (829)
||++|++. .+|..+..+..|++|+|++|.+...--.-+..+++|++|.+++.+-+ ..+|... .+.+|..++++.|.+
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 88877776 56666777777777777777765332233345566666777766543 2344444 566666666666666
Q ss_pred cCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCc-cCCCC
Q 037427 553 YGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLF-GQIPG 631 (829)
Q Consensus 553 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~ 631 (829)
. .+|.. +.++++|+.|+||+|+|+ .+....+...+|+.|+++.|+++ .+|++++.++.|+.|.+.+|+++ .-||+
T Consensus 235 p-~vPec-ly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 235 P-IVPEC-LYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred C-cchHH-HhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCcc
Confidence 2 34433 566666666666666666 33333444456666666666666 66666666666666666666664 22454
Q ss_pred CccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccc
Q 037427 632 CLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIG 711 (829)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~ 711 (829)
.++.+. .|+.+..++|++. ..|+.+.
T Consensus 311 GIGKL~-----------------------------------------------------~Levf~aanN~LE-lVPEglc 336 (1255)
T KOG0444|consen 311 GIGKLI-----------------------------------------------------QLEVFHAANNKLE-LVPEGLC 336 (1255)
T ss_pred chhhhh-----------------------------------------------------hhHHHHhhccccc-cCchhhh
Confidence 444433 5556666666666 6666666
Q ss_pred cCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCc
Q 037427 712 KLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN 751 (829)
Q Consensus 712 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 751 (829)
.+..|+.|.|++|++. ..|+++.-++.|+.|||..|.--
T Consensus 337 RC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 6666666666666666 56666666666666666666543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.6e-32 Score=283.81 Aligned_cols=344 Identities=26% Similarity=0.329 Sum_probs=221.7
Q ss_pred cChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCc-CCCCCCCCCCCCCCEEEccCCcccccCchhhh
Q 037427 331 FPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLS-GPFQTPIQPHWHLDALHVSKNFFQGNIPLEIG 409 (829)
Q Consensus 331 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~ 409 (829)
+|+.++.+.+|+.|.+++|++. .+-.. +..+|.|+.+.+..|++. .-+|..+..+..|+.||||+|+++ .+|..+.
T Consensus 47 vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE 123 (1255)
T KOG0444|consen 47 VPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE 123 (1255)
T ss_pred ChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh
Confidence 3444455555555555555544 12111 234455555555555543 223444555555555555555555 4444443
Q ss_pred hccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCccccc
Q 037427 410 VYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARL 489 (829)
Q Consensus 410 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l 489 (829)
. ..++-.|+|++|+|..+....|.+++.|-.|||++|++. .+|..+..+..|++|+|++|.+.-.--..+
T Consensus 124 ~---------AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL 193 (1255)
T KOG0444|consen 124 Y---------AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQL 193 (1255)
T ss_pred h---------hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcC
Confidence 2 135556666666665554445555666666666666665 455555666666666666665542222233
Q ss_pred CCCCCCCEEEccCCccc-CCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCc
Q 037427 490 GNLSSLNDIMMASNHLQ-GPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSI 567 (829)
Q Consensus 490 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L 567 (829)
..+++|++|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. .+|.+. .+++|+.|+|++|+++. +... .....+|
T Consensus 194 PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~-~~~W~~l 270 (1255)
T KOG0444|consen 194 PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMT-EGEWENL 270 (1255)
T ss_pred ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eecc-HHHHhhh
Confidence 34555566666655432 235566666666666666666665 555555 66666677777766632 2222 4455789
Q ss_pred cEEEccCCcCCCcchhhhhcCCCCCEEEccCCccc-ccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCC
Q 037427 568 VTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLE-GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVG 646 (829)
Q Consensus 568 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 646 (829)
++|++|.|+++ .+|+++.++++|+.|.+.+|+++ .-+|+.++.+.+|+++..++|++. ..|..+..+.
T Consensus 271 EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~--------- 339 (1255)
T KOG0444|consen 271 ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCV--------- 339 (1255)
T ss_pred hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhH---------
Confidence 99999999998 88999999999999999999886 347999999999999999999986 6676665554
Q ss_pred CCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCC
Q 037427 647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNL 726 (829)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 726 (829)
.|+.|.|++|++. ..|+.|.-++.|+.||+..|.-
T Consensus 340 --------------------------------------------kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 340 --------------------------------------------KLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred --------------------------------------------HHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 7889999999998 8999999999999999999987
Q ss_pred CCCccccccccccCCeeecC
Q 037427 727 TGVIPVSFSNLNQVESLDVS 746 (829)
Q Consensus 727 ~~~~p~~l~~l~~L~~LdLs 746 (829)
.-..|.-=..-++|+.-++.
T Consensus 375 LVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 375 LVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred ccCCCCcchhhhcceeeecc
Confidence 75555432222455554443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.5e-22 Score=246.63 Aligned_cols=342 Identities=20% Similarity=0.220 Sum_probs=254.6
Q ss_pred cChhhhCCCCcCEEEcCCCCC------CCCCchHHhhcC-CCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCccccc
Q 037427 331 FPKFLYNQHDLELVDFSDSNL------KGEFPNWLLKNN-PNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGN 403 (829)
Q Consensus 331 ~p~~l~~~~~L~~L~Ls~n~l------~~~~p~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 403 (829)
.+..|..+++|+.|.+..+.. ...+|.. +..+ ++|+.|.+.++.+.. +|..+ ...+|+.|++.+|.+. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-c
Confidence 345678888999988866532 2345665 3344 468999998887764 34444 4678899999988876 3
Q ss_pred CchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCC
Q 037427 404 IPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYG 483 (829)
Q Consensus 404 ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 483 (829)
++..+. .+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|....
T Consensus 626 L~~~~~---------~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 626 LWDGVH---------SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred cccccc---------cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC
Confidence 443332 357889999988765555553 6778899999999887767888888889999999999876555
Q ss_pred CcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccC------cCC
Q 037427 484 NIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYG------PLK 557 (829)
Q Consensus 484 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~------~~~ 557 (829)
.+|..+ ++++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|....+++|+.|.+.++.... .++
T Consensus 696 ~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 770 (1153)
T PLN03210 696 ILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLT 770 (1153)
T ss_pred ccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccc
Confidence 777655 7888999999988766566542 467888999999886 56776677888888887643211 111
Q ss_pred ccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCC
Q 037427 558 YGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTS 637 (829)
Q Consensus 558 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 637 (829)
...+...++|+.|++++|...+.+|.+++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----- 844 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----- 844 (1153)
T ss_pred hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----
Confidence 1112345789999999998888889899999999999999886555777765 7889999999988654444421
Q ss_pred ccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCC
Q 037427 638 LHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIR 717 (829)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 717 (829)
.++|+.|+|++|.++ .+|..+..+++|+
T Consensus 845 ---------------------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~ 872 (1153)
T PLN03210 845 ---------------------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLS 872 (1153)
T ss_pred ---------------------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCC
Confidence 126788999999998 7899999999999
Q ss_pred EEECCCCCCCCCccccccccccCCeeecCCCc
Q 037427 718 ALNFSHNNLTGVIPVSFSNLNQVESLDVSHNN 749 (829)
Q Consensus 718 ~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~ 749 (829)
.|+|++|+-...+|..+..+++|+.+++++|.
T Consensus 873 ~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 873 FLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99999854444678888899999999999885
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.2e-22 Score=245.69 Aligned_cols=342 Identities=20% Similarity=0.214 Sum_probs=265.6
Q ss_pred CchHHhhcCCCCCEEEccCCcC------cCCCCCCCCCC-CCCCEEEccCCcccccCchhhhhccccccccCCCcccEEE
Q 037427 355 FPNWLLKNNPNLSTLVLRNNSL------SGPFQTPIQPH-WHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLV 427 (829)
Q Consensus 355 ~p~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l-~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~ 427 (829)
+....|.++++|+.|.+..+.. ...+|..+..+ .+|+.|++.++.+. .+|..+. ..+|+.|+
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~----------~~~L~~L~ 617 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR----------PENLVKLQ 617 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC----------ccCCcEEE
Confidence 4445578899999999976643 22345555554 46999999998875 5565432 35899999
Q ss_pred cccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccC
Q 037427 428 LSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQG 507 (829)
Q Consensus 428 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 507 (829)
+.+|.+.. ++..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..++++++|+.|++++|...+
T Consensus 618 L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 618 MQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred CcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC
Confidence 99998874 566677899999999998876556774 7888999999999988777889999999999999999987666
Q ss_pred CChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCC-------Cc
Q 037427 508 PIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS-------GN 580 (829)
Q Consensus 508 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~-------~~ 580 (829)
.+|..+ ++++|+.|++++|...+.+|.. ..+|+.|++++|.+ ..+|.. ..+++|+.|++.++... ..
T Consensus 696 ~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i-~~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 696 ILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAI-EEFPSN--LRLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred ccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcc-cccccc--ccccccccccccccchhhcccccccc
Confidence 777655 7899999999999776666653 46789999999987 456654 35788888888774321 12
Q ss_pred chhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccce
Q 037427 581 IPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTY 660 (829)
Q Consensus 581 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (829)
.+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|...
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--------------------------- 822 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--------------------------- 822 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC---------------------------
Confidence 22223345789999999998877899999999999999999987655666432
Q ss_pred ecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccC
Q 037427 661 FVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQV 740 (829)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 740 (829)
.+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|.++..+++|
T Consensus 823 ---------------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L 871 (1153)
T PLN03210 823 ---------------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNL 871 (1153)
T ss_pred ---------------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCC
Confidence 1348899999998766566653 368999999999999 789999999999
Q ss_pred CeeecCCCcCcccCCcccccCCCCcEEeccCCc
Q 037427 741 ESLDVSHNNLNGKIPPQLVELNALVVFSVAHNN 773 (829)
Q Consensus 741 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~ 773 (829)
+.|+|++|+--..+|..+..+++|+.++++++.
T Consensus 872 ~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 872 SFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 999999954444688888899999999998873
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.4e-21 Score=222.04 Aligned_cols=226 Identities=26% Similarity=0.323 Sum_probs=121.8
Q ss_pred cCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeC
Q 037427 445 RKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDL 524 (829)
Q Consensus 445 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 524 (829)
++|++|++++|+++ .+|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|+++. +|. .+++|+.|++
T Consensus 242 ~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdL 309 (788)
T PRK15387 242 PELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSV 309 (788)
T ss_pred CCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeEC
Confidence 44555555555554 23321 234555555555554 23321 1345555555555552 232 1345666666
Q ss_pred CCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCccccc
Q 037427 525 SENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE 604 (829)
Q Consensus 525 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 604 (829)
++|++++ +|.. ...|+.|++++|.+.+ +|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|+++ .
T Consensus 310 S~N~L~~-Lp~l--p~~L~~L~Ls~N~L~~-LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~ 376 (788)
T PRK15387 310 SDNQLAS-LPAL--PSELCKLWAYNNQLTS-LPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-S 376 (788)
T ss_pred CCCcccc-CCCC--cccccccccccCcccc-cccc----ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-c
Confidence 6666553 2321 2345555666665532 3321 1356667777776663 3322 235666677777766 3
Q ss_pred CCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeee
Q 037427 605 VPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSY 684 (829)
Q Consensus 605 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (829)
+|.. ..+|+.|++++|++++ +|...
T Consensus 377 LP~l---~~~L~~LdLs~N~Lt~-LP~l~--------------------------------------------------- 401 (788)
T PRK15387 377 LPAL---PSGLKELIVSGNRLTS-LPVLP--------------------------------------------------- 401 (788)
T ss_pred Cccc---ccccceEEecCCcccC-CCCcc---------------------------------------------------
Confidence 4432 2456677777777653 33211
Q ss_pred cCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCccccc
Q 037427 685 KGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVE 760 (829)
Q Consensus 685 ~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~ 760 (829)
+.|+.|++++|+++ .+|... .+|+.|++++|+|+ .+|+.+.++++|+.|+|++|++++.+|..+..
T Consensus 402 -----s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 402 -----SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred -----cCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 14566777777776 355432 35666777777776 56777777777777777777777766665533
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.7e-21 Score=221.35 Aligned_cols=263 Identities=25% Similarity=0.294 Sum_probs=205.0
Q ss_pred cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA 501 (829)
Q Consensus 422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 501 (829)
.-..|+++++.++ .+|..+. ++|+.|++.+|+++ .+|. .+++|++|++++|+++ .+|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 4567888888887 4555543 47889999999988 4564 2578999999999998 45643 4689999999
Q ss_pred CCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcc
Q 037427 502 SNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI 581 (829)
Q Consensus 502 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 581 (829)
+|.+.. +|.. ..+|+.|++++|+++ .+|. .+++|+.|++++|++.+ +|.. ..+|+.|++++|++++ +
T Consensus 271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~--~p~~L~~LdLS~N~L~~-Lp~l----p~~L~~L~Ls~N~L~~-L 337 (788)
T PRK15387 271 SNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV--LPPGLQELSVSDNQLAS-LPAL----PSELCKLWAYNNQLTS-L 337 (788)
T ss_pred CCchhh-hhhc---hhhcCEEECcCCccc-cccc--cccccceeECCCCcccc-CCCC----cccccccccccCcccc-c
Confidence 999874 4443 367889999999998 4554 34789999999999965 4432 2468889999999985 4
Q ss_pred hhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCcccee
Q 037427 582 PYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYF 661 (829)
Q Consensus 582 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (829)
|.. ..+|++|+|++|+++ .+|.. .++|+.|++++|++++ +|...
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l~---------------------------- 381 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPALP---------------------------- 381 (788)
T ss_pred ccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Ccccc----------------------------
Confidence 532 247999999999998 45643 3578889999999873 45311
Q ss_pred cCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCC
Q 037427 662 VGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVE 741 (829)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 741 (829)
..|+.|++++|+|+ .+|.. .++|+.|++++|++++ +|... .+|+
T Consensus 382 ----------------------------~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~ 425 (788)
T PRK15387 382 ----------------------------SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLP---SGLL 425 (788)
T ss_pred ----------------------------cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcch---hhhh
Confidence 26788999999999 46654 3689999999999995 67543 5788
Q ss_pred eeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCC
Q 037427 742 SLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNP 781 (829)
Q Consensus 742 ~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 781 (829)
.|++++|+|+ .+|..+.+++.|+.+++++|+|+|.+|..
T Consensus 426 ~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 426 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred hhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 9999999998 78999999999999999999999998763
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=1.7e-24 Score=215.20 Aligned_cols=388 Identities=18% Similarity=0.180 Sum_probs=206.6
Q ss_pred CcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccC-CcccccCchhhhhcccccccc
Q 037427 340 DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSK-NFFQGNIPLEIGVYFPSHLAM 418 (829)
Q Consensus 340 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~-n~l~~~ip~~~~~~l~~~~~~ 418 (829)
.-..++|..|+|+ .+|+..|+.+++|++|+|++|.|+.+.|.+|..++++..|-+.+ |+|+. ++...|.
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~---------l~k~~F~ 137 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD---------LPKGAFG 137 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh---------hhhhHhh
Confidence 4577888888887 78887788888888888888888888888888887777666655 77762 4455555
Q ss_pred CCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCC------------Ccc
Q 037427 419 GCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYG------------NIP 486 (829)
Q Consensus 419 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------------~~p 486 (829)
++.+|+.|.+.-|++.....+.|..+++|..|.+..|.+..+.-..|..+..++.+.+..|.+.. ..|
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP 217 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence 66777777777777777777777777777777777777763333467777777777777776321 111
Q ss_pred cccCCCCCCCEEEccCCcccCCChhhhhC-CCCCCEEeCCCCcCcccCCC-CC-CCCcccEEEccCCcccCcCCccccCC
Q 037427 487 ARLGNLSSLNDIMMASNHLQGPIPLEFCQ-LNYLEILDLSENNISGSLPS-CS-SHSTIQQVHLSKNMLYGPLKYGTFFN 563 (829)
Q Consensus 487 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~~-~~~~L~~L~L~~n~l~~~~~~~~l~~ 563 (829)
..+++..-..-..+.+.++..+.+..|.. +..+..=-.+.+...+..|. ++ .+++|++|+|++|++++ +..++|.+
T Consensus 218 ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aFe~ 296 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-IEDGAFEG 296 (498)
T ss_pred hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-hhhhhhcc
Confidence 22222222222233333333222222211 11111111111111112221 12 44444444444444432 22222444
Q ss_pred CCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCC
Q 037427 564 RSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGD 643 (829)
Q Consensus 564 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 643 (829)
...+++|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+..|.+|++-.|++.
T Consensus 297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~----------------- 359 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN----------------- 359 (498)
T ss_pred hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc-----------------
Confidence 444444444444444333344444444444444444444444444444444444444444431
Q ss_pred CCCCCCCCCCCCCccce----ecCCCc--------cccccceeeecccce-ee-------------ecCCCCCCcc-eEE
Q 037427 644 NVGSSAPTFNPNRRTTY----FVGPSI--------LEKEESIMFTTKEIS-FS-------------YKGKPLNKMY-GVD 696 (829)
Q Consensus 644 ~~~~~~~~~~~~~~~~~----~~~~~~--------~~~~~~~~~~~~~~~-~~-------------~~~~~l~~L~-~L~ 696 (829)
...+-.| +++... ......+++.....+ +. +.-...+-+. ...
T Consensus 360 ----------CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvR 429 (498)
T KOG4237|consen 360 ----------CNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVR 429 (498)
T ss_pred ----------CccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHh
Confidence 1111111 111100 001111111110000 00 0001112222 233
Q ss_pred cCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCC
Q 037427 697 LSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHN 772 (829)
Q Consensus 697 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 772 (829)
.|+..+. .+|..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+|+|+++..---.|.++++|.+|-+|||
T Consensus 430 cSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 430 CSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 4444444 4554433 24567889999999 66766 56788 8999999998666677889999999999887
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=5.5e-24 Score=211.61 Aligned_cols=397 Identities=21% Similarity=0.207 Sum_probs=278.7
Q ss_pred cCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccC-CcCcCCCCCCCCCCCCCCEE
Q 037427 315 FQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRN-NSLSGPFQTPIQPHWHLDAL 393 (829)
Q Consensus 315 ~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 393 (829)
..-.+++|..|.|+...|..|..+++|+.||||+|.|+..-|. .|++++++.+|.+.+ |+|+......|..+..++.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~-AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD-AFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChH-hhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 4678999999999999999999999999999999999944454 488999988887776 99999888899999999999
Q ss_pred EccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCC------------Ccc
Q 037427 394 HVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFT------------GEI 461 (829)
Q Consensus 394 ~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~ 461 (829)
.+.-|++.-. +...+..++++..|.+.+|.+....-..|..+..++.+.+..|.+. ...
T Consensus 146 llNan~i~Ci---------r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 146 LLNANHINCI---------RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred hcChhhhcch---------hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 9999988742 2333445678999999999998666668888999999999998842 122
Q ss_pred CccCCCCCCCcEEECCCCcCCCCcccccCC-CCCCCEEEccCCcccCCCh-hhhhCCCCCCEEeCCCCcCcccCCCCC-C
Q 037427 462 PKSLSNCSRLEGLYMSDNNLYGNIPARLGN-LSSLNDIMMASNHLQGPIP-LEFCQLNYLEILDLSENNISGSLPSCS-S 538 (829)
Q Consensus 462 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~ 538 (829)
|..+++.....-..+.+.++..+-+..|.. +.++..=..+.+...++.| ..|..+++|+.|++++|++++.-+..+ .
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 333444444444455555555433333322 1222222233444444544 568999999999999999998888888 8
Q ss_pred CCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCccccc-----CCcccC---
Q 037427 539 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE-----VPNQLC--- 610 (829)
Q Consensus 539 ~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~--- 610 (829)
...++.|.|..|++ ..+....|.++..|+.|+|.+|+|+...|.+|..+.+|.+|+|-.|.+.-. .-+++.
T Consensus 297 ~a~l~eL~L~~N~l-~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 297 AAELQELYLTRNKL-EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred hhhhhhhhcCcchH-HHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 89999999999999 456666799999999999999999999999999999999999998877510 001110
Q ss_pred --------CCCCCCEEECcCCcCccC---CCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeeccc
Q 037427 611 --------GLKQLRLIDLSNNNLFGQ---IPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKE 679 (829)
Q Consensus 611 --------~l~~L~~L~Ls~N~l~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (829)
.-..++.+++++..+... .|+..+-.. ....++.-.. ....+....+.
T Consensus 376 ~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~-------s~~cP~~c~c--------------~~tVvRcSnk~ 434 (498)
T KOG4237|consen 376 VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLT-------SSPCPPPCTC--------------LDTVVRCSNKL 434 (498)
T ss_pred CCCCCCCCCCchhccccchhccccccccCCccccCCCC-------CCCCCCCcch--------------hhhhHhhcccc
Confidence 112344555554443211 111111000 0000000000 00001111111
Q ss_pred ceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCC
Q 037427 680 ISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHN 748 (829)
Q Consensus 680 ~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N 748 (829)
... +........+++++.+|.++ .+|.+ .+.+| .+|+|+|+++...-..|.++++|.+|-||+|
T Consensus 435 lk~-lp~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 435 LKL-LPRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhh-cCCCCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 111 11122335678999999999 78887 67788 9999999999888889999999999999987
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=3.6e-19 Score=204.03 Aligned_cols=246 Identities=26% Similarity=0.381 Sum_probs=157.5
Q ss_pred cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA 501 (829)
Q Consensus 422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 501 (829)
+...|+++++.++. +|..+ .+.|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 56788888888874 34433 357888888888888 4565443 57888888888887 4565443 468888888
Q ss_pred CCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcc
Q 037427 502 SNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI 581 (829)
Q Consensus 502 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 581 (829)
+|++. .+|..+. .+|+.|++++|+++ .+|..+ .++|+.|++++|++.+ +|.. + .++|+.|++++|+++. +
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l-~~sL~~L~Ls~N~Lt~-LP~~-l--p~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL-PEELRYLSVYDNSIRT-LPAH-L--PSGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-cccccc-CCCCcEEECCCCcccc-Cccc-c--hhhHHHHHhcCCcccc-C
Confidence 88887 5565553 47888888888887 455433 2467777777777753 4432 2 1457777777777764 3
Q ss_pred hhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCcccee
Q 037427 582 PYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYF 661 (829)
Q Consensus 582 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (829)
|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+
T Consensus 320 P~~l~--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---------------------------- 365 (754)
T PRK15370 320 PETLP--PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL---------------------------- 365 (754)
T ss_pred Ccccc--ccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh----------------------------
Confidence 43332 46777777777776 3555443 56777777777765 233211
Q ss_pred cCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccc----ccc
Q 037427 662 VGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSF----SNL 737 (829)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~~l 737 (829)
.++|+.|++++|+++ .+|..+. ..|+.|++++|+++ .+|..+ +.+
T Consensus 366 ---------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~ 414 (754)
T PRK15370 366 ---------------------------PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEG 414 (754)
T ss_pred ---------------------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcC
Confidence 115666777777776 4555543 25667777777776 444433 333
Q ss_pred ccCCeeecCCCcCc
Q 037427 738 NQVESLDVSHNNLN 751 (829)
Q Consensus 738 ~~L~~LdLs~N~l~ 751 (829)
+++..|++.+|+++
T Consensus 415 ~~l~~L~L~~Npls 428 (754)
T PRK15370 415 PQPTRIIVEYNPFS 428 (754)
T ss_pred CCccEEEeeCCCcc
Confidence 56667777777766
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=2.7e-19 Score=205.12 Aligned_cols=250 Identities=21% Similarity=0.334 Sum_probs=147.5
Q ss_pred CCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCC
Q 037427 446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLS 525 (829)
Q Consensus 446 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 525 (829)
+|++|++++|.++ .+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|+++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY 291 (754)
T ss_pred CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence 4555555555554 2333322 24555555555555 3444332 35566666666555 2344332 356666666
Q ss_pred CCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccC
Q 037427 526 ENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEV 605 (829)
Q Consensus 526 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 605 (829)
+|++++ +|..+ .++|+.|++++|.+.. +|.. + .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+
T Consensus 292 ~N~Lt~-LP~~l-p~sL~~L~Ls~N~Lt~-LP~~-l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~L 361 (754)
T PRK15370 292 DNSIRT-LPAHL-PSGITHLNVQSNSLTA-LPET-L--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VL 361 (754)
T ss_pred CCcccc-Ccccc-hhhHHHHHhcCCcccc-CCcc-c--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cC
Confidence 666653 33322 2356677777777643 4432 2 2578888888888874 555553 68888888888887 56
Q ss_pred CcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeec
Q 037427 606 PNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYK 685 (829)
Q Consensus 606 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (829)
|..+. ++|+.|++++|+++ .+|..+.
T Consensus 362 P~~lp--~~L~~LdLs~N~Lt-~LP~~l~--------------------------------------------------- 387 (754)
T PRK15370 362 PETLP--PTITTLDVSRNALT-NLPENLP--------------------------------------------------- 387 (754)
T ss_pred Chhhc--CCcCEEECCCCcCC-CCCHhHH---------------------------------------------------
Confidence 66553 57888999998887 3443221
Q ss_pred CCCCCCcceEEcCCCcCCCCCCccc----ccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcc-cCCccccc
Q 037427 686 GKPLNKMYGVDLSCNKLTGEIPPQI----GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG-KIPPQLVE 760 (829)
Q Consensus 686 ~~~l~~L~~L~Ls~N~l~~~ip~~l----~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~-~ip~~l~~ 760 (829)
..|+.|++++|+++ .+|..+ +.++.+..|++.+|.++. ..+.+|+.| ++.+...| .++..+..
T Consensus 388 ----~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~~~~~ 455 (754)
T PRK15370 388 ----AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLFAMGD 455 (754)
T ss_pred ----HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCcccccccc
Confidence 15677889999888 556544 445788899999999882 234455555 44555554 34444555
Q ss_pred CCCCcEEeccCCcceeecCC
Q 037427 761 LNALVVFSVAHNNLSAAERN 780 (829)
Q Consensus 761 l~~L~~L~ls~N~l~g~ip~ 780 (829)
+..++....-.+.+.+-+|.
T Consensus 456 ~~~l~~~~~l~~a~~~Wl~~ 475 (754)
T PRK15370 456 FSIVRVTRPLHQAVQGWLTN 475 (754)
T ss_pred cccccccchHHHHHhccCCc
Confidence 55555444445555555544
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=1.6e-19 Score=193.21 Aligned_cols=83 Identities=19% Similarity=0.267 Sum_probs=44.0
Q ss_pred CcceEEcCCCcCCCCCCccccc-----CCCCCEEECCCCCCCC----CccccccccccCCeeecCCCcCccc----CCcc
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGK-----LTNIRALNFSHNNLTG----VIPVSFSNLNQVESLDVSHNNLNGK----IPPQ 757 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~LdLs~N~l~~~----ip~~ 757 (829)
+|+.|++++|.+++..+..+.. .+.|+.|++++|.++. .++..+..+++|+.+|+++|.++.. ....
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 4555555555555422222211 2566666666666652 2233445556667777777776633 3333
Q ss_pred cccC-CCCcEEeccCCc
Q 037427 758 LVEL-NALVVFSVAHNN 773 (829)
Q Consensus 758 l~~l-~~L~~L~ls~N~ 773 (829)
+... +.|+++++.+|+
T Consensus 302 ~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 302 LLEPGNELESLWVKDDS 318 (319)
T ss_pred HhhcCCchhhcccCCCC
Confidence 3333 566666666665
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=6.9e-18 Score=180.61 Aligned_cols=280 Identities=21% Similarity=0.257 Sum_probs=139.7
Q ss_pred EEEccCCCCC-CCcChhhhCCCCcCEEEcCCCCCCCC----CchHHhhcCCCCCEEEccCCcCcC------CCCCCCCCC
Q 037427 319 SVSLSGSDIH-ATFPKFLYNQHDLELVDFSDSNLKGE----FPNWLLKNNPNLSTLVLRNNSLSG------PFQTPIQPH 387 (829)
Q Consensus 319 ~L~Ls~~~l~-~~~p~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l 387 (829)
.|+|..+.+. ...+..+..+..|+.++++++.+++. ++.. +...+.+++++++++.+.+ .++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 4667777766 44556667777788888888887532 3333 4456678888887776652 111233445
Q ss_pred CCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEccccccccc----Cccccccc-cCCcEEecccccCCCc--
Q 037427 388 WHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQ----LFSKKNYL-RKLARLHLDANYFTGE-- 460 (829)
Q Consensus 388 ~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~-- 460 (829)
++|+.|++++|.+.+..+..+..... . ++|++|++++|.+++. +...+..+ ++|+.|++++|.+++.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~-----~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLR-----S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhc-----c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 56666666666665444333332110 1 2356666666655421 11222333 4555555555555421
Q ss_pred --cCccCCCCCCCcEEECCCCcCCCC----cccccCCCCCCCEEEccCCcccCCC----hhhhhCCCCCCEEeCCCCcCc
Q 037427 461 --IPKSLSNCSRLEGLYMSDNNLYGN----IPARLGNLSSLNDIMMASNHLQGPI----PLEFCQLNYLEILDLSENNIS 530 (829)
Q Consensus 461 --~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~ 530 (829)
++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+.. ...+..+++|++|++++|.++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 122333444555555555554421 1122333344555555544443221 122233344444444444433
Q ss_pred ccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCC----cchhhhhcCCCCCEEEccCCccccc--
Q 037427 531 GSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG----NIPYWIERLIRLRYLILANNNLEGE-- 604 (829)
Q Consensus 531 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~-- 604 (829)
+.... .+........+.|+.|++++|.+++ .+...+..+++|+++++++|.++..
T Consensus 235 ~~~~~-------------------~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 235 DAGAA-------------------ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred hHHHH-------------------HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence 21000 0000001123567777777777652 2233445566777777777777643
Q ss_pred --CCcccCCC-CCCCEEECcCCc
Q 037427 605 --VPNQLCGL-KQLRLIDLSNNN 624 (829)
Q Consensus 605 --~~~~l~~l-~~L~~L~Ls~N~ 624 (829)
....+... +.|+.+|+.+|.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 296 QLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhhcCCchhhcccCCCC
Confidence 23333334 567777777765
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=1.4e-18 Score=153.51 Aligned_cols=188 Identities=28% Similarity=0.444 Sum_probs=151.5
Q ss_pred CCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCC
Q 037427 533 LPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGL 612 (829)
Q Consensus 533 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 612 (829)
+|..+.+..++.|-+++|+++ .+|.. +..+.+|++|++++|++. ..|..++.+++|+.|+++-|++. ..|..|+.+
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~-~vppn-ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLT-VVPPN-IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred cccccchhhhhhhhcccCcee-ecCCc-HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence 444555666677777777774 45555 788999999999999998 67888999999999999999997 889999999
Q ss_pred CCCCEEECcCCcCcc-CCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCC
Q 037427 613 KQLRLIDLSNNNLFG-QIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNK 691 (829)
Q Consensus 613 ~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 691 (829)
+.|++||+.+|++.. .+|+.|..++ .
T Consensus 102 p~levldltynnl~e~~lpgnff~m~-----------------------------------------------------t 128 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMT-----------------------------------------------------T 128 (264)
T ss_pred chhhhhhccccccccccCCcchhHHH-----------------------------------------------------H
Confidence 999999999999863 3454443322 6
Q ss_pred cceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCC---CcEEe
Q 037427 692 MYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNA---LVVFS 768 (829)
Q Consensus 692 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~---L~~L~ 768 (829)
|+.|+|+.|.+. .+|..++++++|+.|.+..|.+. ..|..++.+++|+.|.+.+|+++ .+|+.++++.- =+++.
T Consensus 129 lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r 205 (264)
T KOG0617|consen 129 LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMR 205 (264)
T ss_pred HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHh
Confidence 778899999998 88999999999999999999999 78999999999999999999998 67777766542 24566
Q ss_pred ccCCcceeecCC
Q 037427 769 VAHNNLSAAERN 780 (829)
Q Consensus 769 ls~N~l~g~ip~ 780 (829)
+.+|+...+|.+
T Consensus 206 ~E~NPwv~pIae 217 (264)
T KOG0617|consen 206 MEENPWVNPIAE 217 (264)
T ss_pred hhhCCCCChHHH
Confidence 777777655543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=6.1e-18 Score=149.43 Aligned_cols=167 Identities=27% Similarity=0.444 Sum_probs=151.2
Q ss_pred cCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccC
Q 037427 561 FFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHN 640 (829)
Q Consensus 561 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 640 (829)
+.+++.++.|.+++|+++ .+|..+..+.+|+.|++.+|++. ..|..++.+++|+.|+++-|++. ..|..|+.+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p--- 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP--- 102 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc---
Confidence 567788999999999999 56667999999999999999998 88999999999999999999986 6787777655
Q ss_pred CCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCC-CCCcccccCCCCCEE
Q 037427 641 NGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG-EIPPQIGKLTNIRAL 719 (829)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~L 719 (829)
.|+.|||++|++.. ..|..|-.++.|+.|
T Consensus 103 --------------------------------------------------~levldltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 103 --------------------------------------------------ALEVLDLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred --------------------------------------------------hhhhhhccccccccccCCcchhHHHHHHHH
Confidence 78899999999974 589999999999999
Q ss_pred ECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCCCCCC
Q 037427 720 NFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYC 785 (829)
Q Consensus 720 ~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~ 785 (829)
+|++|.+. .+|..++++++|+.|.++.|.+- .+|..++.++.|++|.+.+|+|+-..|+-++..
T Consensus 133 yl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~ 196 (264)
T KOG0617|consen 133 YLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLD 196 (264)
T ss_pred HhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhh
Confidence 99999999 88999999999999999999998 789999999999999999999999999876553
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.51 E-value=1e-13 Score=159.10 Aligned_cols=153 Identities=29% Similarity=0.460 Sum_probs=98.9
Q ss_pred CCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCC----ccccceEecCC--CCcEEEEEcCCCcccccccccccCcc
Q 037427 19 EGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDC----CKWEGVECNTS--TGRVKALYLSSKRQFLYSTAGQLNAS 92 (829)
Q Consensus 19 ~~~~~~~~~~ll~~k~~~~~~~~~l~~w~~~~~~~~~----c~w~gv~c~~~--~~~v~~L~L~~~~~~~~~~~~~~~~~ 92 (829)
..+.++|.+||+++|+++..+. ..+|.+ ..| |.|.||.|... .+.
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~--~~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~----------------------- 417 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL--RFGWNG----DPCVPQQHPWSGADCQFDSTKGK----------------------- 417 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc--cCCCCC----CCCCCcccccccceeeccCCCCc-----------------------
Confidence 3566789999999999986432 248963 234 37999999531 110
Q ss_pred cccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccc
Q 037427 93 LLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETL 172 (829)
Q Consensus 93 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l 172 (829)
..++.|+|++|.+.+.++.. +..+++|++|+|++|.+.+.+|..++.+++|++|+|++|.++|.+| ..+
T Consensus 418 -----~~v~~L~L~~n~L~g~ip~~----i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP--~~l 486 (623)
T PLN03150 418 -----WFIDGLGLDNQGLRGFIPND----ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP--ESL 486 (623)
T ss_pred -----eEEEEEECCCCCccccCCHH----HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc--hHH
Confidence 01334444555555555543 6677777777777777777777777777777777777777777766 566
Q ss_pred cCCCCCCEEecCCCCCCchhhHhhhcC-CCCCEEEccccc
Q 037427 173 DNFTNLEDLTLDYSSLHISILKSIAAF-TSLKRLSIQNGR 211 (829)
Q Consensus 173 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~L~~n~ 211 (829)
+++++|++|+|++|.+++.+|..++.+ .++..+++.+|.
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 667777777777776666666666543 344555555554
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=1.8e-13 Score=143.39 Aligned_cols=171 Identities=30% Similarity=0.448 Sum_probs=104.0
Q ss_pred EEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCC
Q 037427 544 QVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNN 623 (829)
Q Consensus 544 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 623 (829)
..+++.|++ ..+|.. +..+..|+.+.+..|.+. .+|..+.++..|.+|+|+.|+++ ..|..++.++ |+.|-+++|
T Consensus 79 ~aDlsrNR~-~elp~~-~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRNRF-SELPEE-ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhcccccc-ccCchH-HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 344444444 334444 445555666666666665 55666666666666666666665 5555555554 566666666
Q ss_pred cCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCC
Q 037427 624 NLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT 703 (829)
Q Consensus 624 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 703 (829)
+++ .+|..++... .|..||.|.|.+.
T Consensus 154 kl~-~lp~~ig~~~-----------------------------------------------------tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLP-----------------------------------------------------TLAHLDVSKNEIQ 179 (722)
T ss_pred ccc-cCCcccccch-----------------------------------------------------hHHHhhhhhhhhh
Confidence 665 4454444211 4556666666666
Q ss_pred CCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceee
Q 037427 704 GEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAA 777 (829)
Q Consensus 704 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 777 (829)
.+|..++.+.+|+.|+++.|++. ..|+.+..| .|..||+|+|+++ .||-.|.++..|++|-|.+|+|..+
T Consensus 180 -slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 180 -SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred -hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 56666677777777777777776 344455533 4666777777776 5677777777777777777776644
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=7.6e-12 Score=137.78 Aligned_cols=199 Identities=31% Similarity=0.521 Sum_probs=121.5
Q ss_pred EEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCC-cccEEEccCCcccCcCCccccCCCCCccEEEccCC
Q 037427 497 DIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHS-TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN 575 (829)
Q Consensus 497 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n 575 (829)
.+++..|.+...+ ..+..++.++.|++.+|.++...+...... +|+.|++++|.+. .++.. +..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhh-hhccccccccccCCc
Confidence 5777777764332 234455778888888888874333333442 6777777777773 33322 567777777777777
Q ss_pred cCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCC
Q 037427 576 SFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPN 655 (829)
Q Consensus 576 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (829)
+++ .+|......+.|+.|++++|++. .+|........|++|++++|++. ..+..+..
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~-------------------- 230 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN-------------------- 230 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh--------------------
Confidence 776 34444445667777777777776 55555445555777777777422 12222211
Q ss_pred CccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCcccccc
Q 037427 656 RRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFS 735 (829)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 735 (829)
+..+..+.+++|++. .++..++.+++++.|++++|.++...+ ++
T Consensus 231 ---------------------------------~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~ 274 (394)
T COG4886 231 ---------------------------------LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LG 274 (394)
T ss_pred ---------------------------------cccccccccCCceee-eccchhccccccceecccccccccccc--cc
Confidence 224455556667666 335666677777777777777774433 66
Q ss_pred ccccCCeeecCCCcCcccCCcc
Q 037427 736 NLNQVESLDVSHNNLNGKIPPQ 757 (829)
Q Consensus 736 ~l~~L~~LdLs~N~l~~~ip~~ 757 (829)
.+.+++.||+++|.++...|..
T Consensus 275 ~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 275 SLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccCccCEEeccCccccccchhh
Confidence 7777777777777776555433
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.18 E-value=3.8e-11 Score=138.11 Aligned_cols=113 Identities=27% Similarity=0.474 Sum_probs=90.1
Q ss_pred CCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcc
Q 037427 614 QLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMY 693 (829)
Q Consensus 614 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 693 (829)
.++.|+|++|.+.|.+|..+..+. +|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~-----------------------------------------------------~L~ 445 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR-----------------------------------------------------HLQ 445 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC-----------------------------------------------------CCC
Confidence 367788888888888887666554 788
Q ss_pred eEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccC-CCCcEEeccCC
Q 037427 694 GVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVEL-NALVVFSVAHN 772 (829)
Q Consensus 694 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N 772 (829)
.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ .++..+++++|
T Consensus 446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 88888888888888888888888888888888888888888888888888888888888888877653 45677888888
Q ss_pred cceeecC
Q 037427 773 NLSAAER 779 (829)
Q Consensus 773 ~l~g~ip 779 (829)
...+.+|
T Consensus 526 ~~lc~~p 532 (623)
T PLN03150 526 AGLCGIP 532 (623)
T ss_pred ccccCCC
Confidence 6444444
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=4.7e-11 Score=131.50 Aligned_cols=201 Identities=34% Similarity=0.425 Sum_probs=127.1
Q ss_pred EEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCC-CCCEEeCCCCcCcccCCCCCCCCcccEEEccCCc
Q 037427 473 GLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLN-YLEILDLSENNISGSLPSCSSHSTIQQVHLSKNM 551 (829)
Q Consensus 473 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~ 551 (829)
.+++..|.+... ...+..++.++.|++.+|.++ .++....... +|+.|++++|++.........++.|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 567777766422 223445567777777777777 3444455553 7777888888776322233467777888888877
Q ss_pred ccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCC
Q 037427 552 LYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPG 631 (829)
Q Consensus 552 l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 631 (829)
+. .++.. ....+.|+.|++++|++. .+|........|++|.+++|.+. ..+..+..+.++..+.+.+|++... +.
T Consensus 175 l~-~l~~~-~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 175 LS-DLPKL-LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hh-hhhhh-hhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc
Confidence 74 34432 236677777888888777 44544444556777777777543 4556667777777777777776421 22
Q ss_pred CccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccc
Q 037427 632 CLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIG 711 (829)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~ 711 (829)
.++. ++.++.|++++|.++ .++. ++
T Consensus 250 ~~~~-----------------------------------------------------l~~l~~L~~s~n~i~-~i~~-~~ 274 (394)
T COG4886 250 SIGN-----------------------------------------------------LSNLETLDLSNNQIS-SISS-LG 274 (394)
T ss_pred hhcc-----------------------------------------------------ccccceecccccccc-cccc-cc
Confidence 2222 225677778888777 4444 77
Q ss_pred cCCCCCEEECCCCCCCCCcccccc
Q 037427 712 KLTNIRALNFSHNNLTGVIPVSFS 735 (829)
Q Consensus 712 ~l~~L~~L~Ls~N~l~~~~p~~l~ 735 (829)
.+.+++.|++++|.++...|....
T Consensus 275 ~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 275 SLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred ccCccCEEeccCccccccchhhhc
Confidence 777788888888877766665443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=6.8e-13 Score=139.19 Aligned_cols=191 Identities=26% Similarity=0.399 Sum_probs=102.7
Q ss_pred cEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCc
Q 037427 472 EGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNM 551 (829)
Q Consensus 472 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~ 551 (829)
...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|++||++.|+++ ..|.....--|+.|.+++|+
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNNK 154 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecCc
Confidence 44566666665 55555555566666666666665 55666666666666666666665 33332212223444444444
Q ss_pred ccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCC
Q 037427 552 LYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPG 631 (829)
Q Consensus 552 l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 631 (829)
+ +.+|.+ ++....|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|.
T Consensus 155 l-~~lp~~-ig~~~tl~~ld~s~nei~-------------------------slpsql~~l~slr~l~vrRn~l~-~lp~ 206 (722)
T KOG0532|consen 155 L-TSLPEE-IGLLPTLAHLDVSKNEIQ-------------------------SLPSQLGYLTSLRDLNVRRNHLE-DLPE 206 (722)
T ss_pred c-ccCCcc-cccchhHHHhhhhhhhhh-------------------------hchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence 4 233333 344444555555555444 44444444555555555555443 2232
Q ss_pred CccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccc
Q 037427 632 CLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIG 711 (829)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~ 711 (829)
.+..+ .|..||+|+|+++ .||-.|.
T Consensus 207 El~~L------------------------------------------------------pLi~lDfScNkis-~iPv~fr 231 (722)
T KOG0532|consen 207 ELCSL------------------------------------------------------PLIRLDFSCNKIS-YLPVDFR 231 (722)
T ss_pred HHhCC------------------------------------------------------ceeeeecccCcee-ecchhhh
Confidence 22222 3556777777776 6777777
Q ss_pred cCCCCCEEECCCCCCCCCcccccc---ccccCCeeecCCCc
Q 037427 712 KLTNIRALNFSHNNLTGVIPVSFS---NLNQVESLDVSHNN 749 (829)
Q Consensus 712 ~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~LdLs~N~ 749 (829)
+|+.|++|-|.+|.++ ..|..+. ...--++|+..-++
T Consensus 232 ~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 7777777777777777 4554442 22233555555553
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=6.1e-12 Score=121.71 Aligned_cols=85 Identities=25% Similarity=0.292 Sum_probs=41.7
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccC-CcccccCCCCcEEec
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI-PPQLVELNALVVFSV 769 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~l 769 (829)
+|+.||||+|.++ .+-.+-..+-+.+.|+|+.|.|... ++++++-+|..||+++|+|...- -..+++++.|+++.+
T Consensus 330 ~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 330 QLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred cceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence 3444444444444 2333333444555555555555433 34555555555555555554211 134555555666666
Q ss_pred cCCcceeec
Q 037427 770 AHNNLSAAE 778 (829)
Q Consensus 770 s~N~l~g~i 778 (829)
.+|+|++.+
T Consensus 407 ~~NPl~~~v 415 (490)
T KOG1259|consen 407 TGNPLAGSV 415 (490)
T ss_pred cCCCccccc
Confidence 666665543
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.2e-11 Score=123.18 Aligned_cols=138 Identities=24% Similarity=0.162 Sum_probs=77.0
Q ss_pred CCCCCCcEEECCCCcCCCCcc-cccCCCCCCCEEEccCCcccCCC--hhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcc
Q 037427 466 SNCSRLEGLYMSDNNLYGNIP-ARLGNLSSLNDIMMASNHLQGPI--PLEFCQLNYLEILDLSENNISGSLPSCSSHSTI 542 (829)
Q Consensus 466 ~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 542 (829)
+++.+|+.+.|.++.+..... .....+++++.|+|+.|-+..-. .+....+++|+.|+++.|++........
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~----- 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT----- 192 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-----
Confidence 456778888888877652211 35566777777777777665322 2334467777777777777652221111
Q ss_pred cEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchh-hhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECc
Q 037427 543 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY-WIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLS 621 (829)
Q Consensus 543 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 621 (829)
-..+++|+.|.++.|.++...-. ....+|+|+.|+|.+|.....-.....-++.|+.|||+
T Consensus 193 ------------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 193 ------------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred ------------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence 12345566666666666532222 23345666666666664222222233345566666666
Q ss_pred CCcCc
Q 037427 622 NNNLF 626 (829)
Q Consensus 622 ~N~l~ 626 (829)
+|++.
T Consensus 255 ~N~li 259 (505)
T KOG3207|consen 255 NNNLI 259 (505)
T ss_pred CCccc
Confidence 66653
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.00 E-value=2.1e-11 Score=121.20 Aligned_cols=96 Identities=26% Similarity=0.338 Sum_probs=47.4
Q ss_pred ccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCC---CCccchh-------hhcCCCCCCEEEcCCCcCC
Q 037427 94 LTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNL---FNNSIFS-------SLAGLSSLRTLSLGYNRLK 163 (829)
Q Consensus 94 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~-------~l~~L~~L~~L~Ls~n~i~ 163 (829)
+.++..++.++||+|.+.........+.+.+.+.|+..++|.-. ....+|. ++..+++|++||||.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 44566777777777776544332222335666667776666431 1112332 2334456666666666553
Q ss_pred ccCC--ccccccCCCCCCEEecCCCCCC
Q 037427 164 GSID--VKETLDNFTNLEDLTLDYSSLH 189 (829)
Q Consensus 164 ~~~p--~~~~l~~l~~L~~L~Ls~n~l~ 189 (829)
-.-+ ....+..++.|++|.|.+|.+.
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 1111 1223344455555555555443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=3.7e-10 Score=105.94 Aligned_cols=111 Identities=24% Similarity=0.316 Sum_probs=33.8
Q ss_pred cCCCCCCCEEECCCCCCCccchhhhc-CCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCC
Q 037427 122 LSGLSKLKLLNLGRNLFNNSIFSSLA-GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFT 200 (829)
Q Consensus 122 l~~l~~L~~L~Ls~n~l~~~~~~~l~-~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 200 (829)
+.+..++++|+|++|.|+.+ ..++ .+.+|+.|+|++|.|+. + +.+..+++|++|++++|.++...+.....++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l---~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L---EGLPGLPRLKTLDLSNNRISSISEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S------TT----TT--EEE--SS---S-CHHHHHH-T
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c---cCccChhhhhhcccCCCCCCccccchHHhCC
Confidence 44455667777777776642 2344 46677777777777762 2 3566677777777777777654322224577
Q ss_pred CCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCc
Q 037427 201 SLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLR 240 (829)
Q Consensus 201 ~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 240 (829)
+|++|++++|+|...- ....+..+++|++|++.+|.++
T Consensus 89 ~L~~L~L~~N~I~~l~--~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 89 NLQELYLSNNKISDLN--ELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp T--EEE-TTS---SCC--CCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCEEECcCCcCCChH--HhHHHHcCCCcceeeccCCccc
Confidence 7777777777776421 2234566777777777777665
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=6.4e-10 Score=104.30 Aligned_cols=126 Identities=29% Similarity=0.402 Sum_probs=37.4
Q ss_pred CCCcEEeCCCCCCCCcCCCccccccC-CCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccc-cCC
Q 037427 98 QQLETLHLDSNNIAGFVENGGLERLS-GLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETL-DNF 175 (829)
Q Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l-~~l 175 (829)
..+++|+|.+|.|..+-. ++ .+.+|++|||++|.++.. +.+..+++|++|++++|+|+. ++ +.+ ..+
T Consensus 19 ~~~~~L~L~~n~I~~Ie~------L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~--~~l~~~l 87 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIEN------LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-IS--EGLDKNL 87 (175)
T ss_dssp -----------------S--------TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--C--HHHHHH-
T ss_pred cccccccccccccccccc------hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cc--cchHHhC
Confidence 345666666666654322 33 356666666666666542 235566666666666666652 22 223 245
Q ss_pred CCCCEEecCCCCCCch-hhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEEC
Q 037427 176 TNLEDLTLDYSSLHIS-ILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHM 234 (829)
Q Consensus 176 ~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L 234 (829)
++|++|++++|.|... ....++.+++|++|++.+|.+...---....+..+|+|+.||-
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 6666666666666432 1244556666677777666665331111113455677777664
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.96 E-value=6e-11 Score=118.04 Aligned_cols=175 Identities=19% Similarity=0.190 Sum_probs=85.6
Q ss_pred cccccCCcEEecccccCCCc----cCccCCCCCCCcEEECCCCc---CCCCccc-------ccCCCCCCCEEEccCCccc
Q 037427 441 KNYLRKLARLHLDANYFTGE----IPKSLSNCSRLEGLYMSDNN---LYGNIPA-------RLGNLSSLNDIMMASNHLQ 506 (829)
Q Consensus 441 ~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~---l~~~~p~-------~l~~l~~L~~L~l~~n~l~ 506 (829)
...+..++.+++++|.+... +...+...+.|+..++++-- ....+|. .+..++.|++|+||+|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34456677777777766422 22344555666666666521 1122332 2233445555555555554
Q ss_pred CCChhh----hhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcc-
Q 037427 507 GPIPLE----FCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI- 581 (829)
Q Consensus 507 ~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~- 581 (829)
...+.. +.++..|++|.|.+|.+.-. ....--..|..|. .++ ....-+.|++++...|++....
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~-ag~~l~~al~~l~--~~k--------k~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPE-AGGRLGRALFELA--VNK--------KAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChh-HHHHHHHHHHHHH--HHh--------ccCCCcceEEEEeeccccccccH
Confidence 333322 23444555555555544310 0000000011000 000 0233456777777777765432
Q ss_pred ---hhhhhcCCCCCEEEccCCccccc----CCcccCCCCCCCEEECcCCcCc
Q 037427 582 ---PYWIERLIRLRYLILANNNLEGE----VPNQLCGLKQLRLIDLSNNNLF 626 (829)
Q Consensus 582 ---~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~ 626 (829)
...|...+.|+.+.+..|.|... +...+.++++|++|||.+|-++
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 23345566777777777766421 2234566777777777777665
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=8.6e-11 Score=120.05 Aligned_cols=182 Identities=25% Similarity=0.229 Sum_probs=84.3
Q ss_pred CccEEEccCCCCCCCcC-hhhhCCCCcCEEEcCCCCCCCCCch-HHhhcCCCCCEEEccCCcCcCCCCCCC-CCCCCCCE
Q 037427 316 QLESVSLSGSDIHATFP-KFLYNQHDLELVDFSDSNLKGEFPN-WLLKNNPNLSTLVLRNNSLSGPFQTPI-QPHWHLDA 392 (829)
Q Consensus 316 ~L~~L~Ls~~~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~ 392 (829)
+|+++.|.++.+..... .....+++++.|||+.|-+..-.|. .+...+|+|+.|+++.|++........ ..+
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l----- 196 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL----- 196 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh-----
Confidence 56666666666533221 2445566666666666655421111 234455666666666665543211111 122
Q ss_pred EEccCCcccccCchhhhhccccccccCCCcccEEEccccccccc-CccccccccCCcEEecccccCCCccCccCCCCCCC
Q 037427 393 LHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQ-LFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRL 471 (829)
Q Consensus 393 L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 471 (829)
+.|+.|.|+.|.++.. +......+|+|+.|++..|...........-++.|
T Consensus 197 ----------------------------~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 197 ----------------------------SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred ----------------------------hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence 3455555555555421 11122345555555555553221222222334455
Q ss_pred cEEECCCCcCCCCc-ccccCCCCCCCEEEccCCcccCCC-hhh-----hhCCCCCCEEeCCCCcCc
Q 037427 472 EGLYMSDNNLYGNI-PARLGNLSSLNDIMMASNHLQGPI-PLE-----FCQLNYLEILDLSENNIS 530 (829)
Q Consensus 472 ~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~-~~~-----~~~l~~L~~L~Ls~n~l~ 530 (829)
+.|||++|.+.... -...+.++.|+.|+++.+.+...- |+. ....++|++|++..|++.
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 66666666554211 023445555555555555554321 111 123455666666666553
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.95 E-value=9.4e-11 Score=129.11 Aligned_cols=266 Identities=23% Similarity=0.244 Sum_probs=134.8
Q ss_pred cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA 501 (829)
Q Consensus 422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 501 (829)
.++.++..++.+....-. ...+..++.+.+..|.+.. +-..+..+++|+.|++.+|++... ...+..+++|++|+++
T Consensus 50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls 126 (414)
T KOG0531|consen 50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLS 126 (414)
T ss_pred hhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecc
Confidence 445555555443322111 1234455555555555552 222344555555566665555522 2123444455555555
Q ss_pred CCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcc
Q 037427 502 SNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI 581 (829)
Q Consensus 502 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 581 (829)
+|.|+...+ +..++. |+.|++++|.+.. +.. +..++.|+.+++++|++...-
T Consensus 127 ~N~I~~i~~--l~~l~~-----------------------L~~L~l~~N~i~~-~~~--~~~l~~L~~l~l~~n~i~~ie 178 (414)
T KOG0531|consen 127 FNKITKLEG--LSTLTL-----------------------LKELNLSGNLISD-ISG--LESLKSLKLLDLSYNRIVDIE 178 (414)
T ss_pred ccccccccc--hhhccc-----------------------hhhheeccCcchh-ccC--CccchhhhcccCCcchhhhhh
Confidence 555443221 333333 4444444444422 111 444666666777777666443
Q ss_pred h-hhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccce
Q 037427 582 P-YWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTY 660 (829)
Q Consensus 582 ~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (829)
+ . ...+.+++.+.+.+|.+. ....+..+..+..+++..|.++..-+-.
T Consensus 179 ~~~-~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~~~l~~n~i~~~~~l~---------------------------- 227 (414)
T KOG0531|consen 179 NDE-LSELISLEELDLGGNSIR--EIEGLDLLKKLVLLSLLDNKISKLEGLN---------------------------- 227 (414)
T ss_pred hhh-hhhccchHHHhccCCchh--cccchHHHHHHHHhhcccccceeccCcc----------------------------
Confidence 3 2 355666667777777664 2223334444555566666654211100
Q ss_pred ecCCCccccccceeeecccceeeecCCCCC--CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccc
Q 037427 661 FVGPSILEKEESIMFTTKEISFSYKGKPLN--KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLN 738 (829)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 738 (829)
.+. .|+.+++++|.+. .++..+..+..+..|++++|++... ..+....
T Consensus 228 ---------------------------~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~ 277 (414)
T KOG0531|consen 228 ---------------------------ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLP 277 (414)
T ss_pred ---------------------------cchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccc
Confidence 000 2566777777766 4445566667777777777777654 2344556
Q ss_pred cCCeeecCCCcCccc---CCcc-cccCCCCcEEeccCCcceeecC
Q 037427 739 QVESLDVSHNNLNGK---IPPQ-LVELNALVVFSVAHNNLSAAER 779 (829)
Q Consensus 739 ~L~~LdLs~N~l~~~---ip~~-l~~l~~L~~L~ls~N~l~g~ip 779 (829)
.+..+.+..|.+... .... ......+....+.+|+.....+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 278 KLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 666666666666521 1111 3455666777777777665544
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=2.2e-10 Score=111.13 Aligned_cols=62 Identities=23% Similarity=0.205 Sum_probs=35.3
Q ss_pred cCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcC
Q 037427 561 FFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625 (829)
Q Consensus 561 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 625 (829)
..-.|.++.|++|+|.|... . .+..+++|+.|||++|.++ .+..+-..+-+.++|.|++|.+
T Consensus 303 vKL~Pkir~L~lS~N~i~~v-~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNRIRTV-Q-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKI 364 (490)
T ss_pred hhhccceeEEeccccceeee-h-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhH
Confidence 34455666666666666522 2 2555666666666666665 4444444555556666666554
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.81 E-value=3.7e-09 Score=124.13 Aligned_cols=104 Identities=20% Similarity=0.207 Sum_probs=55.9
Q ss_pred CCCEEECCCCC--CCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCE
Q 037427 127 KLKLLNLGRNL--FNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKR 204 (829)
Q Consensus 127 ~L~~L~Ls~n~--l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 204 (829)
.|++|-+..|. +.......|..++.|++|||++|.--+.+| ..++.+-+||+|+|++..+. .+|..++++++|.+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP--~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP--SSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC--hHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 45555555553 332333445556666666666554444555 55566666666666665555 45556666666666
Q ss_pred EEcccccCccccCCCccccCCCCCCcEEECCC
Q 037427 205 LSIQNGRVDGALGDDEEGLCRLGHLQELHMGG 236 (829)
Q Consensus 205 L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~ 236 (829)
|++..+.....+|. ....+++|++|.+..
T Consensus 623 Lnl~~~~~l~~~~~---i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 623 LNLEVTGRLESIPG---ILLELQSLRVLRLPR 651 (889)
T ss_pred eccccccccccccc---hhhhcccccEEEeec
Confidence 66655543333333 333456666665543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=2.7e-09 Score=82.12 Aligned_cols=59 Identities=44% Similarity=0.631 Sum_probs=28.8
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCc
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNN 749 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~ 749 (829)
+|++|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555555553333444455555555555555554444444555555555555444
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=2.7e-09 Score=82.17 Aligned_cols=61 Identities=41% Similarity=0.620 Sum_probs=57.5
Q ss_pred CCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcc
Q 037427 714 TNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNL 774 (829)
Q Consensus 714 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 774 (829)
++|++|++++|+++...++.|.++++|++||+++|+++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999988778999999999999999999988889999999999999999986
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=4.7e-09 Score=123.27 Aligned_cols=129 Identities=22% Similarity=0.249 Sum_probs=100.1
Q ss_pred CcEEEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCC--CCCcCCCccccccCCCCCCCEEECCCCCCCccchhh
Q 037427 68 GRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNN--IAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSS 145 (829)
Q Consensus 68 ~~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 145 (829)
..|+++.+.++.... + ..-...+.|++|-+.+|. +...... .|..++.|++||||+|.--+.+|..
T Consensus 523 ~~~rr~s~~~~~~~~------~--~~~~~~~~L~tLll~~n~~~l~~is~~----ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH------I--AGSSENPKLRTLLLQRNSDWLLEISGE----FFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred hheeEEEEeccchhh------c--cCCCCCCccceEEEeecchhhhhcCHH----HHhhCcceEEEECCCCCccCcCChH
Confidence 456777766654321 0 011234579999988886 3333222 3788999999999998777789999
Q ss_pred hcCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEccccc
Q 037427 146 LAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGR 211 (829)
Q Consensus 146 l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 211 (829)
++.|-+||||+|+++.+. .+| ..++++..|.+|++..+.-...+|.....+++||+|.+....
T Consensus 591 I~~Li~LryL~L~~t~I~-~LP--~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTGIS-HLP--SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HhhhhhhhcccccCCCcc-ccc--hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 999999999999999998 677 899999999999999988776677778889999999987654
No 42
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.75 E-value=1.1e-08 Score=71.72 Aligned_cols=40 Identities=38% Similarity=0.765 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhcCC-CCCCCCCCCCCCCC-CCCCccccceEec
Q 037427 23 EQERSALLRLKHDFF-NDPFNLENWVDDEN-HSDCCKWEGVECN 64 (829)
Q Consensus 23 ~~~~~~ll~~k~~~~-~~~~~l~~w~~~~~-~~~~c~w~gv~c~ 64 (829)
++|++||++||+++. ++...+.+|.. . ..+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence 689999999999998 45578999972 2 2799999999995
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.72 E-value=1.6e-09 Score=119.39 Aligned_cols=195 Identities=26% Similarity=0.269 Sum_probs=138.6
Q ss_pred CCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEE
Q 037427 420 CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIM 499 (829)
Q Consensus 420 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 499 (829)
+..++.+.+..|.+.. .-..+..+.+|+.+++.+|.+... ...+..+++|++|++++|.|+.. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 4578888899998875 223466789999999999999854 33377899999999999999855 3467788899999
Q ss_pred ccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCC-CCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCC
Q 037427 500 MASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPS-CSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 578 (829)
Q Consensus 500 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~ 578 (829)
+++|.+... ..+..++.|+.+++++|.+...-+. .-.+.+++.+++.+|.+...-. +..+..+..+++..|.++
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~---~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG---LDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc---hHHHHHHHHhhcccccce
Confidence 999999843 3466689999999999999854442 2466778888888887743222 334445555577777766
Q ss_pred CcchhhhhcCCC--CCEEEccCCcccccCCcccCCCCCCCEEECcCCcCc
Q 037427 579 GNIPYWIERLIR--LRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLF 626 (829)
Q Consensus 579 ~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 626 (829)
..-+ +..+.. |+.+++++|++. ..+..+..+..+..|++.+|++.
T Consensus 222 ~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 222 KLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred eccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 3322 122222 677777777776 44355666777777777777764
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.39 E-value=3.7e-08 Score=94.70 Aligned_cols=237 Identities=17% Similarity=0.201 Sum_probs=113.7
Q ss_pred CCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCC---Cccc-------hhhhcCCCCCCEEEcCCCcCCccC
Q 037427 97 FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLF---NNSI-------FSSLAGLSSLRTLSLGYNRLKGSI 166 (829)
Q Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l---~~~~-------~~~l~~L~~L~~L~Ls~n~i~~~~ 166 (829)
+..+..+|||+|.|...........+.+-++|++.++|.-.. ...+ ..++-+|++|+..+||.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 456666666666665543333233355566667666665321 1112 234456677777777777665443
Q ss_pred C--ccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccC
Q 037427 167 D--VKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP 244 (829)
Q Consensus 167 p--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p 244 (829)
| ..+.++.-+.|++|.|++|.+.-..-..+++ .|.+ |..|+ ....-|.|+......|++.. .|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~nK----------Kaa~kp~Le~vicgrNRlen-gs 173 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYNK----------KAADKPKLEVVICGRNRLEN-GS 173 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHHh----------hhccCCCceEEEeccchhcc-Cc
Confidence 3 2334555666666666666543221111110 0000 00000 11233455555555555531 01
Q ss_pred CccCcccccccCCCCCCCCCCCCEEEcccccCccc----cCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEE
Q 037427 245 CLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIP----FSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESV 320 (829)
Q Consensus 245 ~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~----~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L 320 (829)
-...+..+..-..|+.+.+..|.|... .....+..+.+|++|++..|.++....
T Consensus 174 --------~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS-------------- 231 (388)
T COG5238 174 --------KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS-------------- 231 (388)
T ss_pred --------HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH--------------
Confidence 000011112224566666666655411 000113345555555555554432110
Q ss_pred EccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhc-----CCCCCEEEccCCcCcC
Q 037427 321 SLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKN-----NPNLSTLVLRNNSLSG 378 (829)
Q Consensus 321 ~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-----l~~L~~L~L~~n~l~~ 378 (829)
..+...+..++.|+.|.+.+|-++......++.. .|+|..|-..+|...+
T Consensus 232 --------~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 232 --------RYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred --------HHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 1122334455667888888887776555554432 4677777777777664
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.1e-08 Score=97.66 Aligned_cols=203 Identities=18% Similarity=0.183 Sum_probs=113.9
Q ss_pred CCEEECCCCCCCccchhhhcCC--CCCCEEEcCCCcCCccCC-ccccccCC-CCCCEEecCCCCCCch-hhHhhhcCCCC
Q 037427 128 LKLLNLGRNLFNNSIFSSLAGL--SSLRTLSLGYNRLKGSID-VKETLDNF-TNLEDLTLDYSSLHIS-ILKSIAAFTSL 202 (829)
Q Consensus 128 L~~L~Ls~n~l~~~~~~~l~~L--~~L~~L~Ls~n~i~~~~p-~~~~l~~l-~~L~~L~Ls~n~l~~~-~~~~l~~l~~L 202 (829)
=+.||+.+-.+. |.+++.+ ....++.+....+.. | ..+.+.-+ +.||+||||...|+.. .-..+..+.+|
T Consensus 138 W~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~--prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kL 212 (419)
T KOG2120|consen 138 WQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQ--PRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKL 212 (419)
T ss_pred eeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcC--chhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhh
Confidence 356777776554 5555554 344555555443331 2 11233333 3589999999888743 33446788888
Q ss_pred CEEEcccccCccccCCCccccCCCCCCcEEECCCcc-CccccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccC
Q 037427 203 KRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGND-LRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFS 281 (829)
Q Consensus 203 ~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~-l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~ 281 (829)
+.|.+.+++++..+.. .+.+-.+|+.|+++.+. ++. .. + ..-+.+++.|.+|+|+||.+..+.-
T Consensus 213 k~lSlEg~~LdD~I~~---~iAkN~~L~~lnlsm~sG~t~-n~-~----------~ll~~scs~L~~LNlsWc~l~~~~V 277 (419)
T KOG2120|consen 213 KNLSLEGLRLDDPIVN---TIAKNSNLVRLNLSMCSGFTE-NA-L----------QLLLSSCSRLDELNLSWCFLFTEKV 277 (419)
T ss_pred hhccccccccCcHHHH---HHhccccceeeccccccccch-hH-H----------HHHHHhhhhHhhcCchHhhccchhh
Confidence 8888888888876555 67777888888888763 221 00 0 1123567777777777776543221
Q ss_pred chhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCC---CCcChhhhCCCCcCEEEcCCCCCCCCCchH
Q 037427 282 LEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIH---ATFPKFLYNQHDLELVDFSDSNLKGEFPNW 358 (829)
Q Consensus 282 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~---~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 358 (829)
...+ ..-..+|+.|+|+|+.-. ..+......+++|..|||++|.....--..
T Consensus 278 tv~V-------------------------~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~ 332 (419)
T KOG2120|consen 278 TVAV-------------------------AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 332 (419)
T ss_pred hHHH-------------------------hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH
Confidence 1111 111235667777766421 122223345677777777776532221111
Q ss_pred HhhcCCCCCEEEccCCc
Q 037427 359 LLKNNPNLSTLVLRNNS 375 (829)
Q Consensus 359 ~~~~l~~L~~L~L~~n~ 375 (829)
.+-+++.|++|.++.|.
T Consensus 333 ~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HHHhcchheeeehhhhc
Confidence 23456666666666664
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.34 E-value=1.7e-08 Score=86.99 Aligned_cols=90 Identities=18% Similarity=0.321 Sum_probs=74.2
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA 770 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 770 (829)
.++.|+|++|.++ .+|.++..++.|+.||++.|.+. ..|..+..|.+|-.||..+|.+. +||..+..-+.....++.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg 154 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG 154 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence 5677899999998 88999999999999999999999 67888888999999999999998 677665444455556677
Q ss_pred CCcceeecCCCCC
Q 037427 771 HNNLSAAERNPGP 783 (829)
Q Consensus 771 ~N~l~g~ip~~~~ 783 (829)
++++.+.-|-++|
T Consensus 155 nepl~~~~~~klq 167 (177)
T KOG4579|consen 155 NEPLGDETKKKLQ 167 (177)
T ss_pred CCcccccCccccc
Confidence 8888887776654
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=1.5e-08 Score=109.87 Aligned_cols=182 Identities=27% Similarity=0.328 Sum_probs=104.5
Q ss_pred ccccCCCCCcEEeCCCCCCCCcCCCccccccCCC-CCCCEEECCCCCCC---ccchhhhcCC------CCCCEEEcCCCc
Q 037427 92 SLLTPFQQLETLHLDSNNIAGFVENGGLERLSGL-SKLKLLNLGRNLFN---NSIFSSLAGL------SSLRTLSLGYNR 161 (829)
Q Consensus 92 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~---~~~~~~l~~L------~~L~~L~Ls~n~ 161 (829)
-.+.+|+.||+|.|.++.+..... +..+ ..|++|-.++ .+. ..+....+.. ..|.+.+.+.|+
T Consensus 103 i~ifpF~sLr~LElrg~~L~~~~G------L~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLSTAKG------LQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNR 175 (1096)
T ss_pred ceeccccceeeEEecCcchhhhhh------hHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhh
Confidence 346778888888888888764211 1111 1233332221 110 0011111111 245566666666
Q ss_pred CCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCcc
Q 037427 162 LKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRG 241 (829)
Q Consensus 162 i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g 241 (829)
+. .+. .++.-++.|++|+|++|+++.. +.+..+++|++|||+.|.+. .+|.. +...+. |+.|.+.+|.++.
T Consensus 176 L~-~mD--~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l--~~~gc~-L~~L~lrnN~l~t 246 (1096)
T KOG1859|consen 176 LV-LMD--ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQL--SMVGCK-LQLLNLRNNALTT 246 (1096)
T ss_pred HH-hHH--HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-ccccc--chhhhh-heeeeecccHHHh
Confidence 65 223 5666677777777777777654 46777777777777777766 33331 222333 7777777776652
Q ss_pred ccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeec
Q 037427 242 TLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVE 304 (829)
Q Consensus 242 ~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~ 304 (829)
+ ..+.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|.+...
T Consensus 247 -L--------------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 247 -L--------------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred -h--------------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 1 12266777777777777776655555666777777777777776543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=3.4e-08 Score=107.16 Aligned_cols=124 Identities=27% Similarity=0.222 Sum_probs=92.8
Q ss_pred cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCccc-ccCCCCCCCEEEc
Q 037427 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPA-RLGNLSSLNDIMM 500 (829)
Q Consensus 422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~l 500 (829)
.|...+.++|.+. .+...+.-++.|+.|+|++|+++.. +.+..++.|++|||++|.+. .+|. ....+. |..|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 6777888888876 3445666788899999999999854 36888999999999999887 4443 223343 889999
Q ss_pred cCCcccCCChhhhhCCCCCCEEeCCCCcCcccCC--CCCCCCcccEEEccCCcc
Q 037427 501 ASNHLQGPIPLEFCQLNYLEILDLSENNISGSLP--SCSSHSTIQQVHLSKNML 552 (829)
Q Consensus 501 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l 552 (829)
++|.++.. ..+.++.+|+.||+++|-+.+.-. ..+.+..|+.|+|.+|.+
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 99988743 457788999999999998874322 223667788888888876
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=3.4e-08 Score=96.21 Aligned_cols=65 Identities=18% Similarity=0.111 Sum_probs=30.3
Q ss_pred CCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCC
Q 037427 262 HLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDI 327 (829)
Q Consensus 262 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l 327 (829)
.+++|.+|||++|.--..--...|.+++.|+++.++.+.... +.........+.|.+|+..++--
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~-p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII-PETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC-hHHeeeeccCcceEEEEeccccC
Confidence 455555555555432111112234455555555555543221 11111123445788888777643
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=4.6e-07 Score=78.27 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=42.3
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCccccc
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVE 760 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~ 760 (829)
.|+.|+++.|.+. ..|..+..+.+|-.|+..+|.+. .+|-.+-.-+..-..++.++.+.+.-|..+..
T Consensus 101 aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa 168 (177)
T KOG4579|consen 101 ALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQA 168 (177)
T ss_pred HhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccccc
Confidence 5666667777766 55666666777777777777777 44444332334444566777777766654443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=1.3e-06 Score=85.50 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=43.3
Q ss_pred CCCCCEEEccCCcccC--CChhhhhCCCCCCEEeCCCCcCcccCCCC-CCCCcccEEEccCCcccCcCCccccCCCCCcc
Q 037427 492 LSSLNDIMMASNHLQG--PIPLEFCQLNYLEILDLSENNISGSLPSC-SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIV 568 (829)
Q Consensus 492 l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 568 (829)
++.++.+++.+|.|+. .+...+.++|.|++|+++.|++...+... ....+|+.|-|.+..+.-.-....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3455556666665542 22233446677777777777666444333 24445566655555443222222244555555
Q ss_pred EEEccCC
Q 037427 569 TLDLSYN 575 (829)
Q Consensus 569 ~L~Ls~n 575 (829)
.|.++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 5655555
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=2.8e-06 Score=83.15 Aligned_cols=200 Identities=15% Similarity=0.105 Sum_probs=91.7
Q ss_pred CCcccEEEcccccccc--cCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCC-CcccccCCCCCCC
Q 037427 420 CFNLEYLVLSENSLHG--QLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYG-NIPARLGNLSSLN 496 (829)
Q Consensus 420 ~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~ 496 (829)
++.++.+||.+|.++. ++...+.++|.|++|+++.|.+...+...-....+|++|-|.+..+.- .....+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3455666666666542 223334456666666666666653322111234456666666554431 1122344555555
Q ss_pred EEEccCCcccCCC--hhhhhC-CCCCCEEeCCCCcCcccCC--CC-CCCCcccEEEccCCcccCcCCccccCCCCCccEE
Q 037427 497 DIMMASNHLQGPI--PLEFCQ-LNYLEILDLSENNISGSLP--SC-SSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTL 570 (829)
Q Consensus 497 ~L~l~~n~l~~~~--~~~~~~-l~~L~~L~Ls~n~l~~~~~--~~-~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 570 (829)
.|.++.|...... .+.... -+.+.+|..-.|...-... .. -.++++..+.+..|.+...-....+...+.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 6655555322110 001111 1122333333322110000 00 0233455555555554333332224445555666
Q ss_pred EccCCcCCCcc-hhhhhcCCCCCEEEccCCcccccCCc------ccCCCCCCCEEE
Q 037427 571 DLSYNSFSGNI-PYWIERLIRLRYLILANNNLEGEVPN------QLCGLKQLRLID 619 (829)
Q Consensus 571 ~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~ 619 (829)
+|+.|+|..-. -+.+.++++|..|.++++.+....-. .++.+++++.|+
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 77777665321 23456667777777777766533221 245566666665
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.95 E-value=6.2e-07 Score=86.48 Aligned_cols=47 Identities=28% Similarity=0.351 Sum_probs=29.6
Q ss_pred CCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEccccccc
Q 037427 383 PIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLH 434 (829)
Q Consensus 383 ~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~ 434 (829)
++..+++|+..+||+|.|....|+.++.++... +.|++|.+++|.+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~-----t~l~HL~l~NnGlG 133 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSS-----TDLVHLKLNNNGLG 133 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcC-----CCceeEEeecCCCC
Confidence 344566677777777777666666666654433 56777777777653
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=3.3e-05 Score=81.77 Aligned_cols=73 Identities=10% Similarity=0.177 Sum_probs=40.2
Q ss_pred CCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCC-cccccCCcccCCCCCCCE
Q 037427 539 HSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN-NLEGEVPNQLCGLKQLRL 617 (829)
Q Consensus 539 ~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~ 617 (829)
+..++.|++++|.+. .+|. + .++|+.|.++++.--..+|..+. ++|+.|++++| .+. .+|. +|+.
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRS 116 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccce
Confidence 466777777777653 3441 1 23577777776443334554442 46777777776 433 3332 3555
Q ss_pred EECcCCcC
Q 037427 618 IDLSNNNL 625 (829)
Q Consensus 618 L~Ls~N~l 625 (829)
|+++++..
T Consensus 117 L~L~~n~~ 124 (426)
T PRK15386 117 LEIKGSAT 124 (426)
T ss_pred EEeCCCCC
Confidence 66655443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.2e-05 Score=56.40 Aligned_cols=36 Identities=36% Similarity=0.658 Sum_probs=15.8
Q ss_pred CCCEEECCCCCCCCCccccccccccCCeeecCCCcCc
Q 037427 715 NIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN 751 (829)
Q Consensus 715 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 751 (829)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444444
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.2e-05 Score=56.41 Aligned_cols=38 Identities=34% Similarity=0.731 Sum_probs=32.9
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCC
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGV 729 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 729 (829)
+|++|++++|+++ .+|..+++|++|++|++++|+|+..
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 7899999999999 6787899999999999999999943
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.56 E-value=0.00015 Score=67.57 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=4.7
Q ss_pred CCCCCCcEEEC
Q 037427 224 CRLGHLQELHM 234 (829)
Q Consensus 224 ~~l~~L~~L~L 234 (829)
.++++|+.||.
T Consensus 137 ~klp~l~~LDF 147 (233)
T KOG1644|consen 137 YKLPSLRTLDF 147 (233)
T ss_pred EecCcceEeeh
Confidence 33444444443
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.55 E-value=0.0001 Score=68.59 Aligned_cols=108 Identities=24% Similarity=0.259 Sum_probs=81.0
Q ss_pred CCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCC
Q 037427 97 FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFT 176 (829)
Q Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~ 176 (829)
..+...+||++|.+..... |..+++|.+|.|++|+|+.+.|.--.-+++|..|.|.+|.|.. +.....+..++
T Consensus 41 ~d~~d~iDLtdNdl~~l~~------lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~pLa~~p 113 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN------LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDPLASCP 113 (233)
T ss_pred ccccceecccccchhhccc------CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhcchhccCC
Confidence 3466788899888875533 7788899999999999987666655667789999999998862 22334678888
Q ss_pred CCCEEecCCCCCCchh---hHhhhcCCCCCEEEccccc
Q 037427 177 NLEDLTLDYSSLHISI---LKSIAAFTSLKRLSIQNGR 211 (829)
Q Consensus 177 ~L~~L~Ls~n~l~~~~---~~~l~~l~~L~~L~L~~n~ 211 (829)
.|++|.+-+|..+..- .-.+..+++|++||...-.
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9999999998877442 1246788999999987543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=5.6e-05 Score=87.14 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=82.8
Q ss_pred CCCCEEECCCCCCC-ccchhhhc-CCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCC
Q 037427 126 SKLKLLNLGRNLFN-NSIFSSLA-GLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLK 203 (829)
Q Consensus 126 ~~L~~L~Ls~n~l~-~~~~~~l~-~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 203 (829)
.+|++||+++...- ..-|..++ .||+|+.|.+++-.+...- ......++++|..||+|+++++.. ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 46666777664432 11223333 3567777776665443110 113345667777777777776655 5667777777
Q ss_pred EEEcccccCccccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCch
Q 037427 204 RLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLE 283 (829)
Q Consensus 204 ~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~ 283 (829)
+|.+.+-.+... ..+..+.+|++|+.||+|.......--.+ .-.++. -..+++|+.||.|+..+...+-..
T Consensus 199 ~L~mrnLe~e~~--~~l~~LF~L~~L~vLDIS~~~~~~~~~ii-----~qYlec--~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 199 VLSMRNLEFESY--QDLIDLFNLKKLRVLDISRDKNNDDTKII-----EQYLEC--GMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HHhccCCCCCch--hhHHHHhcccCCCeeeccccccccchHHH-----HHHHHh--cccCccccEEecCCcchhHHHHHH
Confidence 776665544321 12224666777777777765433211000 000101 134778888888887776555444
Q ss_pred hhcCCCCCcee
Q 037427 284 PFFNLSKLKVF 294 (829)
Q Consensus 284 ~l~~l~~L~~L 294 (829)
.+..-++|+.+
T Consensus 270 ll~sH~~L~~i 280 (699)
T KOG3665|consen 270 LLNSHPNLQQI 280 (699)
T ss_pred HHHhCccHhhh
Confidence 44444444443
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.40 E-value=0.0006 Score=72.41 Aligned_cols=31 Identities=6% Similarity=0.218 Sum_probs=16.5
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCC
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHN 724 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N 724 (829)
+|++|++++|... ..|..+. .+|+.|+++.|
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 5566666665544 3333333 35666666655
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.38 E-value=1.3e-05 Score=82.35 Aligned_cols=64 Identities=16% Similarity=0.063 Sum_probs=30.7
Q ss_pred hCCCCcCEEEcCCCCCCCCCc----hHHhhcCCCCCEEEccCCcCcC-CCCCCCCCCCCCCEEEccCCc
Q 037427 336 YNQHDLELVDFSDSNLKGEFP----NWLLKNNPNLSTLVLRNNSLSG-PFQTPIQPHWHLDALHVSKNF 399 (829)
Q Consensus 336 ~~~~~L~~L~Ls~n~l~~~~p----~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ls~n~ 399 (829)
.+++.|+.+.+++|.....-. ...-..+..|+.+.++++.... .....+..++.|+.+++-+++
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 345566666666554321110 0001234556666666665442 222234455666666666554
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.27 E-value=1.5e-05 Score=81.99 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=19.5
Q ss_pred CCCCcCEEEcCCCCCCCCCchH-HhhcCCCCCEEEccCCc
Q 037427 337 NQHDLELVDFSDSNLKGEFPNW-LLKNNPNLSTLVLRNNS 375 (829)
Q Consensus 337 ~~~~L~~L~Ls~n~l~~~~p~~-~~~~l~~L~~L~L~~n~ 375 (829)
.+..|+.++.+++.-.+..+-+ +..+.++|+.|-++.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence 3556666666665543222222 22344556666555554
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00028 Score=68.84 Aligned_cols=86 Identities=26% Similarity=0.345 Sum_probs=49.9
Q ss_pred CCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCC--CCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccC
Q 037427 97 FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRN--LFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDN 174 (829)
Q Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~ 174 (829)
+..|+.|++.+..++.... +-.+++|+.|.+|.| ++.+.++.....+++|++|+|++|+|.. +.....+..
T Consensus 42 ~~~le~ls~~n~gltt~~~------~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~ 114 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN------FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKE 114 (260)
T ss_pred ccchhhhhhhccceeeccc------CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhh
Confidence 4445555555555543322 556677777777777 5555555455566777777777777762 221234455
Q ss_pred CCCCCEEecCCCCCC
Q 037427 175 FTNLEDLTLDYSSLH 189 (829)
Q Consensus 175 l~~L~~L~Ls~n~l~ 189 (829)
+.+|..|++..|..+
T Consensus 115 l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVT 129 (260)
T ss_pred hcchhhhhcccCCcc
Confidence 556666666666544
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.10 E-value=0.00036 Score=80.60 Aligned_cols=140 Identities=19% Similarity=0.252 Sum_probs=90.1
Q ss_pred CCCCcEEeCCCCCCCCcCCCcccccc-CCCCCCCEEECCCCCCCcc-chhhhcCCCCCCEEEcCCCcCCccCCccccccC
Q 037427 97 FQQLETLHLDSNNIAGFVENGGLERL-SGLSKLKLLNLGRNLFNNS-IFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDN 174 (829)
Q Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~ 174 (829)
-++|++||+++...... .....+ ..||+|+.|.+++-.+... ......++++|+.||+|++.++.. ..+++
T Consensus 121 r~nL~~LdI~G~~~~s~---~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~ 193 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSN---GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISR 193 (699)
T ss_pred HHhhhhcCccccchhhc---cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhc
Confidence 36788888877543311 111112 3578888888887666433 334456788888888888887732 57888
Q ss_pred CCCCCEEecCCCCCCc-hhhHhhhcCCCCCEEEcccccCcccc--CC-CccccCCCCCCcEEECCCccCcccc
Q 037427 175 FTNLEDLTLDYSSLHI-SILKSIAAFTSLKRLSIQNGRVDGAL--GD-DEEGLCRLGHLQELHMGGNDLRGTL 243 (829)
Q Consensus 175 l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~~-~~~~l~~l~~L~~L~L~~n~l~g~~ 243 (829)
+++|+.|.+.+-.+.. .....+.+|++|++||+|..+..... .. ..+.-..+|+|+.||.|++.+.+.+
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 8888888888777664 33456778888888888876543221 00 0011224788999999888776543
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.85 E-value=0.0027 Score=57.31 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=3.1
Q ss_pred hcCCCCCEEEc
Q 037427 361 KNNPNLSTLVL 371 (829)
Q Consensus 361 ~~l~~L~~L~L 371 (829)
.++++|+.+.+
T Consensus 9 ~~~~~l~~i~~ 19 (129)
T PF13306_consen 9 YNCSNLESITF 19 (129)
T ss_dssp TT-TT--EEEE
T ss_pred hCCCCCCEEEE
Confidence 33334444443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=4.4e-05 Score=74.31 Aligned_cols=84 Identities=23% Similarity=0.270 Sum_probs=50.5
Q ss_pred CCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCC
Q 037427 97 FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFT 176 (829)
Q Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~ 176 (829)
+.+.+.|+..++.+.++.- +.+++.|++|.||-|.|+.. ..|..|++|+.|+|..|.|. .+.....+.+++
T Consensus 18 l~~vkKLNcwg~~L~DIsi------c~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI------CEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHHHH------HHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence 4456666777776665432 45677777777777777653 33667777777777777665 223234455556
Q ss_pred CCCEEecCCCCCC
Q 037427 177 NLEDLTLDYSSLH 189 (829)
Q Consensus 177 ~L~~L~Ls~n~l~ 189 (829)
+|+.|.|..|.-.
T Consensus 89 sLr~LWL~ENPCc 101 (388)
T KOG2123|consen 89 SLRTLWLDENPCC 101 (388)
T ss_pred hhhhHhhccCCcc
Confidence 6666666555433
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.82 E-value=0.003 Score=57.01 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=27.8
Q ss_pred ccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECc
Q 037427 558 YGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLS 621 (829)
Q Consensus 558 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 621 (829)
..+|.++++|+.+.+.. .+.......|.++++|+.+.+.++ +.......|.++++++.+.+.
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 33456666666666653 344444455566666666666554 443444455555556666554
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.74 E-value=0.00042 Score=67.62 Aligned_cols=86 Identities=24% Similarity=0.367 Sum_probs=46.0
Q ss_pred CCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCC--cCCccCCccccccCCCCCCEEecCCCCCCc-hhhHhhhcCC
Q 037427 124 GLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYN--RLKGSIDVKETLDNFTNLEDLTLDYSSLHI-SILKSIAAFT 200 (829)
Q Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n--~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~ 200 (829)
.+..|+.|++.+..++. -..|-.|++|++|.+|.| ++.+.++ -...++++|++|++++|++.. .....+..+.
T Consensus 41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~--vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLE--VLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccce--ehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 34455555555544442 233556677777777777 4544444 233444677777777776652 1112234445
Q ss_pred CCCEEEcccccCc
Q 037427 201 SLKRLSIQNGRVD 213 (829)
Q Consensus 201 ~L~~L~L~~n~l~ 213 (829)
+|..|++.+|...
T Consensus 117 nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 117 NLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcc
Confidence 5555555555443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.00038 Score=68.02 Aligned_cols=80 Identities=29% Similarity=0.277 Sum_probs=38.2
Q ss_pred CCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchh-----hhhcCC
Q 037427 515 QLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPY-----WIERLI 589 (829)
Q Consensus 515 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-----~l~~l~ 589 (829)
.++.|+.|.||-|+|+ .+.....|+.|++|+|..|.+...-....+.++++|+.|.|..|.-.|..+. .+.-++
T Consensus 39 kMp~lEVLsLSvNkIs-sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKIS-SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred hcccceeEEeeccccc-cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 4444455555555444 2222224444444444444443222222245666666666666665554432 234456
Q ss_pred CCCEEE
Q 037427 590 RLRYLI 595 (829)
Q Consensus 590 ~L~~L~ 595 (829)
+|+.||
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
Confidence 666554
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.55 E-value=0.0046 Score=35.94 Aligned_cols=12 Identities=58% Similarity=0.747 Sum_probs=5.3
Q ss_pred CCeeecCCCcCc
Q 037427 740 VESLDVSHNNLN 751 (829)
Q Consensus 740 L~~LdLs~N~l~ 751 (829)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.31 E-value=0.0056 Score=35.58 Aligned_cols=19 Identities=58% Similarity=0.791 Sum_probs=10.4
Q ss_pred CCEEECCCCCCCCCcccccc
Q 037427 716 IRALNFSHNNLTGVIPVSFS 735 (829)
Q Consensus 716 L~~L~Ls~N~l~~~~p~~l~ 735 (829)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455566666555 4554444
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.28 E-value=0.0026 Score=72.21 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=15.4
Q ss_pred ccEEEccCCcCCCc-chhhhhc-CCCCCEEEccCCcc
Q 037427 567 IVTLDLSYNSFSGN-IPYWIER-LIRLRYLILANNNL 601 (829)
Q Consensus 567 L~~L~Ls~n~l~~~-~~~~l~~-l~~L~~L~L~~n~l 601 (829)
++.|+++.+..... .-..... +..++.+++.++..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 55666665543211 1111111 44555666655543
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.95 E-value=0.00059 Score=75.41 Aligned_cols=69 Identities=25% Similarity=0.191 Sum_probs=30.8
Q ss_pred ccCCCCCcEEeCCCCCCCCcCCCccccccCCC-CCCCEEECCCCCCCcc----chhhhcCCCCCCEEEcCCCcC
Q 037427 94 LTPFQQLETLHLDSNNIAGFVENGGLERLSGL-SKLKLLNLGRNLFNNS----IFSSLAGLSSLRTLSLGYNRL 162 (829)
Q Consensus 94 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~~L~Ls~n~i 162 (829)
+...+.|..|++++|.+.+.......+.+... ..|++|++..+.+++. +...+....+++.+|++.|.+
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 34445555555555555522111111112222 3445555555554432 334444455555555555554
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.89 E-value=0.0043 Score=59.24 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=73.2
Q ss_pred CCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEec
Q 037427 690 NKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSV 769 (829)
Q Consensus 690 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 769 (829)
...+.||++.|++. ..-..|+-++.|..|+++.|++. ..|..++++..+..+++..|..+ ..|.++..++.+++++.
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 36778999999987 45556788889999999999999 88999999999999999999998 78999999999999999
Q ss_pred cCCcce
Q 037427 770 AHNNLS 775 (829)
Q Consensus 770 s~N~l~ 775 (829)
-+|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 988864
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.81 E-value=0.02 Score=64.89 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=10.2
Q ss_pred cCCCCCccEEEccCCcC
Q 037427 561 FFNRSSIVTLDLSYNSF 577 (829)
Q Consensus 561 l~~l~~L~~L~Ls~n~l 577 (829)
...++.++.+.+.++..
T Consensus 358 ~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGI 374 (482)
T ss_pred HhcCCCcchhhhhhhhc
Confidence 45566666666666653
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.51 E-value=0.001 Score=73.61 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=22.1
Q ss_pred CccEEEccCCCCCCCc----ChhhhCCCCcCEEEcCCCCCCC
Q 037427 316 QLESVSLSGSDIHATF----PKFLYNQHDLELVDFSDSNLKG 353 (829)
Q Consensus 316 ~L~~L~Ls~~~l~~~~----p~~l~~~~~L~~L~Ls~n~l~~ 353 (829)
.++.++++.|.++..- ...+..++.++++.++.|.+.+
T Consensus 263 ~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 263 TLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 4455555555555433 3344456677777777777664
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.15 E-value=0.14 Score=27.49 Aligned_cols=11 Identities=45% Similarity=0.842 Sum_probs=3.3
Q ss_pred CCEEECCCCCC
Q 037427 716 IRALNFSHNNL 726 (829)
Q Consensus 716 L~~L~Ls~N~l 726 (829)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33444444443
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.86 E-value=0.0066 Score=58.02 Aligned_cols=86 Identities=15% Similarity=0.160 Sum_probs=55.1
Q ss_pred cCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccC
Q 037427 95 TPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDN 174 (829)
Q Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~ 174 (829)
..+.+.+.||++.|++...-.. |+-++.|..||++.|.+. ..|..++.+..++.+++..|..+ ..| .+++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n-----~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p--~s~~k 109 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKN-----FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQP--KSQKK 109 (326)
T ss_pred hccceeeeehhhhhHHHhhccc-----hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCC--ccccc
Confidence 4455566666666665543332 555667777777777665 46667777777777777776665 445 56677
Q ss_pred CCCCCEEecCCCCCC
Q 037427 175 FTNLEDLTLDYSSLH 189 (829)
Q Consensus 175 l~~L~~L~Ls~n~l~ 189 (829)
.++++++++.++.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 777777777776654
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.94 E-value=0.44 Score=28.86 Aligned_cols=13 Identities=46% Similarity=0.843 Sum_probs=5.7
Q ss_pred CCCEEECCCCCCC
Q 037427 715 NIRALNFSHNNLT 727 (829)
Q Consensus 715 ~L~~L~Ls~N~l~ 727 (829)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.94 E-value=0.44 Score=28.86 Aligned_cols=13 Identities=46% Similarity=0.843 Sum_probs=5.7
Q ss_pred CCCEEECCCCCCC
Q 037427 715 NIRALNFSHNNLT 727 (829)
Q Consensus 715 ~L~~L~Ls~N~l~ 727 (829)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.06 E-value=0.18 Score=47.67 Aligned_cols=81 Identities=20% Similarity=0.230 Sum_probs=47.1
Q ss_pred CCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCcccccc-CCCCCCEEecCCC-CCCchhhHhhhcCCCCCEE
Q 037427 128 LKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLD-NFTNLEDLTLDYS-SLHISILKSIAAFTSLKRL 205 (829)
Q Consensus 128 L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~-~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L 205 (829)
++.+|-++..|..+--..+.+++.++.|.+.++.--+.-- .+.++ -.++|+.|++++| .|+......+..+++|+.|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-HHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4556666666655555556666666666666665432210 01222 2467777777766 3666666667777777777
Q ss_pred Eccc
Q 037427 206 SIQN 209 (829)
Q Consensus 206 ~L~~ 209 (829)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6653
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.77 E-value=0.57 Score=28.34 Aligned_cols=19 Identities=42% Similarity=0.835 Sum_probs=13.8
Q ss_pred cccCCeeecCCCcCcccCCc
Q 037427 737 LNQVESLDVSHNNLNGKIPP 756 (829)
Q Consensus 737 l~~L~~LdLs~N~l~~~ip~ 756 (829)
+++|++|+|++|+|+ .+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCCcCC-cCCH
Confidence 467888888888888 4443
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.77 E-value=0.57 Score=28.34 Aligned_cols=19 Identities=42% Similarity=0.835 Sum_probs=13.8
Q ss_pred cccCCeeecCCCcCcccCCc
Q 037427 737 LNQVESLDVSHNNLNGKIPP 756 (829)
Q Consensus 737 l~~L~~LdLs~N~l~~~ip~ 756 (829)
+++|++|+|++|+|+ .+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCCcCC-cCCH
Confidence 467888888888888 4443
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.66 E-value=0.38 Score=28.48 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=9.5
Q ss_pred CCCCEEecCCCCCCchhhHhh
Q 037427 176 TNLEDLTLDYSSLHISILKSI 196 (829)
Q Consensus 176 ~~L~~L~Ls~n~l~~~~~~~l 196 (829)
++|++|+|++|.+++.....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455555555555554444433
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.77 E-value=0.44 Score=28.19 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=8.0
Q ss_pred CCccEEEccCCcCCCcch
Q 037427 565 SSIVTLDLSYNSFSGNIP 582 (829)
Q Consensus 565 ~~L~~L~Ls~n~l~~~~~ 582 (829)
++|++|++++|+|++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 345555555555544333
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.06 E-value=0.54 Score=44.59 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=40.5
Q ss_pred cccEEEcccccccccCccccccccCCcEEecccccCCCccC-ccCC-CCCCCcEEECCCC-cCCCCcccccCCCCCCCEE
Q 037427 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIP-KSLS-NCSRLEGLYMSDN-NLYGNIPARLGNLSSLNDI 498 (829)
Q Consensus 422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~-~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L 498 (829)
.++.+|-++..|..+..+.+..++.++.|.+.+|.--+... +.++ -.++|+.|++++| +|++..-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 45666666666665555555666666666666664322100 0011 2345666666655 3443333344444555544
Q ss_pred Ecc
Q 037427 499 MMA 501 (829)
Q Consensus 499 ~l~ 501 (829)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.80 E-value=2.7 Score=25.48 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=9.9
Q ss_pred ccCCeeecCCCcCc
Q 037427 738 NQVESLDVSHNNLN 751 (829)
Q Consensus 738 ~~L~~LdLs~N~l~ 751 (829)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56777777777775
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=71.69 E-value=21 Score=38.78 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=12.8
Q ss_pred CCCEEEccCCcccccCchhhh
Q 037427 389 HLDALHVSKNFFQGNIPLEIG 409 (829)
Q Consensus 389 ~L~~L~ls~n~l~~~ip~~~~ 409 (829)
.+.+++++.|.....+|..+.
T Consensus 215 ~lteldls~n~~Kddip~~~n 235 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLN 235 (553)
T ss_pred cccccccccCCCCccchhHHH
Confidence 355666777766666665443
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.11 E-value=3.4 Score=25.00 Aligned_cols=13 Identities=46% Similarity=0.736 Sum_probs=6.7
Q ss_pred CCCEEECCCCCCC
Q 037427 715 NIRALNFSHNNLT 727 (829)
Q Consensus 715 ~L~~L~Ls~N~l~ 727 (829)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3455555555555
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=69.08 E-value=12 Score=40.46 Aligned_cols=60 Identities=23% Similarity=0.245 Sum_probs=32.9
Q ss_pred CcEEecccccCCCccC---ccCCCCCCCcEEECCCCcCCC----CcccccCCCCCCCEEEccCCccc
Q 037427 447 LARLHLDANYFTGEIP---KSLSNCSRLEGLYMSDNNLYG----NIPARLGNLSSLNDIMMASNHLQ 506 (829)
Q Consensus 447 L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~ 506 (829)
+..+.++.|......- .....-+.+..|++++|.... .+|.....-.+++.+..+.|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 4555666665542211 223345667778888776653 23445555556666666666544
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.01 E-value=8.1 Score=23.85 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=6.8
Q ss_pred CCCEEecCCCCCC
Q 037427 177 NLEDLTLDYSSLH 189 (829)
Q Consensus 177 ~L~~L~Ls~n~l~ 189 (829)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.78 E-value=6.8 Score=43.22 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=42.7
Q ss_pred CCCCcceEEcCCCcCCCC--CCcccccCCCCCEEECCCCCCCCCcccccccc--ccCCeeecCCCcCcc
Q 037427 688 PLNKMYGVDLSCNKLTGE--IPPQIGKLTNIRALNFSHNNLTGVIPVSFSNL--NQVESLDVSHNNLNG 752 (829)
Q Consensus 688 ~l~~L~~L~Ls~N~l~~~--ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~LdLs~N~l~~ 752 (829)
..+.+..+.|++|++... +...-..-++|+.|+|++|...-..-.++.++ ..|++|-+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 456788899999998632 11122345789999999993222222334433 358899999999864
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.27 E-value=20 Score=39.70 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=8.9
Q ss_pred CCCCCCEEEcccccCc
Q 037427 262 HLTSIERLFLSYNQFQ 277 (829)
Q Consensus 262 ~l~~L~~L~Ls~n~~~ 277 (829)
+.+.+..+.|++|++.
T Consensus 216 n~p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY 231 (585)
T ss_pred CCcceeeeecccchhh
Confidence 4455555666666554
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=32.06 E-value=48 Score=19.81 Aligned_cols=10 Identities=40% Similarity=0.517 Sum_probs=4.4
Q ss_pred CCCEEecCCC
Q 037427 177 NLEDLTLDYS 186 (829)
Q Consensus 177 ~L~~L~Ls~n 186 (829)
+|++|+|++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 3444444444
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.07 E-value=40 Score=45.17 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=27.3
Q ss_pred EcCCCcCCCCCCcccccCCCCCEEECCCCCCC
Q 037427 696 DLSCNKLTGEIPPQIGKLTNIRALNFSHNNLT 727 (829)
Q Consensus 696 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 727 (829)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999777778888899999999999876
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.54 E-value=54 Score=44.10 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=29.9
Q ss_pred ECCCCCCCCCccccccccccCCeeecCCCcCcc
Q 037427 720 NFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG 752 (829)
Q Consensus 720 ~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 752 (829)
||++|+|+.+.+..|..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999998888889999999999999999873
Done!