Query 037427
Match_columns 829
No_of_seqs 904 out of 4854
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 20:52:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.7E-87 9.1E-92 799.4 54.3 708 17-798 5-742 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.4E-71 4.7E-76 663.9 40.8 596 92-777 94-743 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 8.7E-61 3E-65 566.1 49.4 578 98-779 25-626 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 3.8E-59 1.3E-63 552.1 49.5 584 67-755 24-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 6.9E-55 2.4E-59 508.7 48.4 521 99-779 34-564 (606)
6 3t6q_A CD180 antigen; protein- 100.0 4.6E-54 1.6E-58 501.7 45.7 523 67-755 32-564 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 5.9E-54 2E-58 500.8 40.5 524 98-780 32-563 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-53 6.1E-58 496.8 37.3 532 101-829 14-565 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1E-52 3.5E-57 506.4 40.4 541 102-778 8-563 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 5.6E-52 1.9E-56 499.9 38.3 517 97-755 23-564 (844)
11 4eco_A Uncharacterized protein 100.0 8.2E-53 2.8E-57 490.3 25.1 518 20-751 26-600 (636)
12 4ecn_A Leucine-rich repeat pro 100.0 7.1E-50 2.4E-54 471.9 37.3 540 19-776 264-865 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 3.7E-48 1.3E-52 448.7 38.8 506 98-781 28-537 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 3.2E-47 1.1E-51 438.6 40.2 478 126-780 26-515 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 1E-46 3.6E-51 436.6 35.5 493 67-631 27-536 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-46 8.1E-51 431.3 33.6 473 98-630 26-514 (549)
17 4eco_A Uncharacterized protein 100.0 7.9E-47 2.7E-51 439.9 23.1 365 324-779 192-604 (636)
18 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-43 3.6E-48 417.2 44.5 518 99-776 53-581 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 3.8E-45 1.3E-49 418.1 28.9 224 470-753 248-483 (520)
20 4g8a_A TOLL-like receptor 4; l 100.0 6.9E-44 2.4E-48 418.8 40.4 536 101-829 34-587 (635)
21 4ecn_A Leucine-rich repeat pro 100.0 5.4E-45 1.9E-49 430.3 27.7 375 325-780 435-845 (876)
22 2z7x_B TOLL-like receptor 1, v 100.0 8E-44 2.7E-48 407.1 30.7 463 71-630 3-485 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.3E-42 2.8E-46 393.6 28.6 128 98-240 31-159 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.6E-41 1.6E-45 387.4 27.0 459 71-630 34-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 1.4E-39 4.7E-44 365.6 29.5 372 343-781 14-414 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 3.2E-39 1.1E-43 362.7 28.1 367 315-755 30-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 5.2E-39 1.8E-43 357.5 27.4 320 199-627 10-331 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 3.5E-39 1.2E-43 358.8 24.5 421 149-781 10-435 (454)
29 1ogq_A PGIP-2, polygalacturona 100.0 2.1E-38 7.1E-43 335.9 19.3 205 19-241 1-211 (313)
30 3bz5_A Internalin-J, INLJ; leu 100.0 5.8E-36 2E-40 333.2 28.8 210 335-635 187-396 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 4.2E-36 1.5E-40 334.3 27.6 350 334-781 37-393 (457)
32 1o6v_A Internalin A; bacterial 100.0 4.4E-35 1.5E-39 329.1 34.0 343 316-776 47-389 (466)
33 2id5_A Lingo-1, leucine rich r 100.0 1.5E-35 5E-40 334.7 26.7 322 390-777 13-335 (477)
34 1o6v_A Internalin A; bacterial 100.0 1.9E-34 6.6E-39 323.9 35.1 347 286-752 43-389 (466)
35 2id5_A Lingo-1, leucine rich r 100.0 2.2E-35 7.4E-40 333.3 24.8 347 366-779 13-360 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 4.5E-33 1.5E-37 305.5 26.1 287 420-777 68-354 (390)
37 3o6n_A APL1; leucine-rich repe 100.0 9.8E-33 3.3E-37 302.8 26.0 310 96-482 43-352 (390)
38 3oja_B Anopheles plasmodium-re 100.0 1.5E-32 5.2E-37 317.9 26.1 286 421-777 75-360 (597)
39 4fmz_A Internalin; leucine ric 100.0 1.6E-31 5.3E-36 288.5 30.8 307 360-775 40-346 (347)
40 3oja_B Anopheles plasmodium-re 100.0 2.5E-32 8.7E-37 316.0 25.1 290 420-778 50-340 (597)
41 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-33 8.5E-38 296.9 15.0 252 446-777 51-307 (313)
42 4fmz_A Internalin; leucine ric 100.0 2.3E-31 7.8E-36 287.2 30.7 307 335-751 40-346 (347)
43 1xku_A Decorin; proteoglycan, 100.0 4.2E-30 1.4E-34 275.0 29.1 268 422-773 53-330 (330)
44 1z7x_W Ribonuclease inhibitor; 100.0 2.7E-34 9.2E-39 323.1 -5.0 356 316-753 4-413 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 2.7E-30 9.2E-35 276.6 25.1 267 422-773 55-331 (332)
46 2ft3_A Biglycan; proteoglycan, 100.0 2.8E-30 9.5E-35 276.5 24.9 266 446-775 34-307 (332)
47 1xku_A Decorin; proteoglycan, 100.0 6E-30 2.1E-34 273.7 26.6 268 446-776 32-307 (330)
48 1z7x_W Ribonuclease inhibitor; 100.0 2.7E-33 9.3E-38 314.9 -4.0 355 331-757 48-446 (461)
49 4fcg_A Uncharacterized protein 100.0 2.4E-30 8.2E-35 275.5 14.4 273 20-377 23-314 (328)
50 3zyj_A Leucine-rich repeat-con 100.0 5.8E-28 2E-32 269.0 25.2 248 447-776 45-293 (440)
51 2z66_A Variable lymphocyte rec 100.0 2.1E-28 7.3E-33 258.8 19.7 258 470-780 29-292 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 1.2E-28 4E-33 266.3 16.9 281 421-755 31-318 (353)
53 2z66_A Variable lymphocyte rec 100.0 7.9E-28 2.7E-32 254.4 19.5 249 472-778 10-264 (306)
54 2z80_A TOLL-like receptor 2, v 100.0 1.7E-28 5.8E-33 265.0 13.8 279 443-779 29-318 (353)
55 3ogk_B Coronatine-insensitive 99.9 6.8E-30 2.3E-34 296.9 0.3 460 54-598 40-547 (592)
56 3ogk_B Coronatine-insensitive 99.9 6.8E-30 2.3E-34 296.9 -0.5 398 315-772 112-548 (592)
57 4fcg_A Uncharacterized protein 99.9 3.7E-27 1.3E-31 250.9 19.4 234 444-750 80-313 (328)
58 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-28 3.7E-33 262.0 6.0 269 422-781 11-282 (317)
59 3zyi_A Leucine-rich repeat-con 99.9 2.3E-26 8E-31 256.9 25.0 247 447-775 56-303 (452)
60 1ozn_A Reticulon 4 receptor; N 99.9 9.3E-27 3.2E-31 243.4 19.6 235 469-781 32-267 (285)
61 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-26 4.9E-31 242.0 19.4 228 472-779 14-242 (285)
62 3o53_A Protein LRIM1, AGAP0063 99.9 5.8E-28 2E-32 256.4 8.4 269 389-757 11-282 (317)
63 3zyi_A Leucine-rich repeat-con 99.9 5.5E-26 1.9E-30 253.9 24.1 208 422-634 55-263 (452)
64 1wwl_A Monocyte differentiatio 99.9 6.5E-28 2.2E-32 255.3 6.3 81 691-776 229-310 (312)
65 3zyj_A Leucine-rich repeat-con 99.9 1.4E-25 4.8E-30 249.7 24.9 186 446-633 65-251 (440)
66 3g06_A SSPH2 (leucine-rich rep 99.9 6E-25 2E-29 251.4 29.0 80 691-779 222-301 (622)
67 1wwl_A Monocyte differentiatio 99.9 3.5E-27 1.2E-31 249.7 9.1 57 691-752 254-310 (312)
68 3g06_A SSPH2 (leucine-rich rep 99.9 3.5E-25 1.2E-29 253.3 26.0 269 364-762 40-308 (622)
69 3oja_A Leucine-rich immune mol 99.9 1.1E-26 3.7E-31 260.9 10.5 234 470-770 35-270 (487)
70 3oja_A Leucine-rich immune mol 99.9 7.3E-26 2.5E-30 254.1 11.9 236 444-746 33-270 (487)
71 2p1m_B Transport inhibitor res 99.9 1.9E-27 6.5E-32 276.4 -6.0 396 315-773 105-542 (594)
72 2p1m_B Transport inhibitor res 99.9 1.9E-27 6.6E-32 276.4 -6.3 383 335-775 101-519 (594)
73 2z62_A TOLL-like receptor 4, v 99.9 6.1E-24 2.1E-28 220.8 20.0 88 691-779 150-241 (276)
74 1p9a_G Platelet glycoprotein I 99.9 2.5E-23 8.5E-28 217.0 20.6 203 513-775 6-208 (290)
75 2o6q_A Variable lymphocyte rec 99.9 7.4E-23 2.5E-27 211.7 23.5 204 519-778 18-221 (270)
76 3rfs_A Internalin B, repeat mo 99.9 6.4E-24 2.2E-28 219.8 15.5 221 471-781 21-241 (272)
77 2z62_A TOLL-like receptor 4, v 99.9 5.9E-23 2E-27 213.3 21.5 211 470-755 29-241 (276)
78 2o6q_A Variable lymphocyte rec 99.9 2.5E-22 8.5E-27 207.7 23.4 141 561-754 81-221 (270)
79 1p9a_G Platelet glycoprotein I 99.9 1.4E-22 4.7E-27 211.4 20.9 204 488-752 5-209 (290)
80 3rfs_A Internalin B, repeat mo 99.9 9.2E-23 3.1E-27 211.1 17.5 230 444-763 18-247 (272)
81 3goz_A Leucine-rich repeat-con 99.9 3.3E-24 1.1E-28 232.0 2.2 61 566-626 168-238 (362)
82 3goz_A Leucine-rich repeat-con 99.9 9.5E-24 3.2E-28 228.4 5.3 178 449-626 2-209 (362)
83 2ca6_A RAN GTPase-activating p 99.9 2.8E-24 9.5E-29 235.0 -0.3 93 460-552 23-134 (386)
84 3m19_A Variable lymphocyte rec 99.9 1.8E-21 6.3E-26 198.8 19.8 180 518-753 15-194 (251)
85 1h6u_A Internalin H; cell adhe 99.9 1.3E-21 4.5E-26 206.1 18.2 208 474-776 24-231 (308)
86 4glp_A Monocyte differentiatio 99.9 6.3E-22 2.2E-26 209.2 15.4 184 422-625 65-263 (310)
87 4glp_A Monocyte differentiatio 99.9 1.8E-22 6E-27 213.4 11.2 232 470-776 65-308 (310)
88 2ca6_A RAN GTPase-activating p 99.9 8.9E-24 3.1E-28 231.0 0.8 253 437-754 24-319 (386)
89 2ast_B S-phase kinase-associat 99.9 1.1E-22 3.8E-27 218.0 9.1 175 423-624 49-233 (336)
90 2ast_B S-phase kinase-associat 99.9 5.5E-23 1.9E-27 220.4 4.1 251 446-781 48-312 (336)
91 1h6u_A Internalin H; cell adhe 99.9 4.1E-21 1.4E-25 202.3 18.0 162 427-626 25-186 (308)
92 3m19_A Variable lymphocyte rec 99.9 1.2E-20 4.1E-25 192.7 20.4 182 540-778 14-195 (251)
93 2xwt_C Thyrotropin receptor; s 99.8 4.8E-21 1.6E-25 194.2 14.8 196 494-772 32-236 (239)
94 2xwt_C Thyrotropin receptor; s 99.8 6.4E-21 2.2E-25 193.3 13.3 196 422-624 32-237 (239)
95 3cvr_A Invasion plasmid antige 99.8 1.6E-20 5.3E-25 212.1 16.1 94 470-578 60-153 (571)
96 3cvr_A Invasion plasmid antige 99.8 8.8E-20 3E-24 206.0 17.7 115 494-627 60-174 (571)
97 4ay9_X Follicle-stimulating ho 99.8 7.7E-20 2.6E-24 196.5 15.3 240 448-772 12-256 (350)
98 4ay9_X Follicle-stimulating ho 99.8 8.9E-20 3E-24 196.0 15.3 207 518-780 31-241 (350)
99 2o6s_A Variable lymphocyte rec 99.8 1.4E-19 4.7E-24 179.1 15.4 174 544-781 11-184 (208)
100 2o6s_A Variable lymphocyte rec 99.8 3.4E-19 1.2E-23 176.3 16.3 151 448-625 10-160 (208)
101 2xot_A Amphoterin-induced prot 99.8 1.2E-19 4.2E-24 195.8 13.1 176 543-775 21-202 (361)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 5.8E-19 2E-23 175.9 15.4 89 691-779 82-170 (220)
103 2v9t_B SLIT homolog 2 protein 99.8 1.3E-18 4.6E-23 173.2 16.0 85 691-775 81-165 (220)
104 3e6j_A Variable lymphocyte rec 99.8 4.7E-18 1.6E-22 170.5 18.0 160 52-242 15-174 (229)
105 2xot_A Amphoterin-induced prot 99.8 2E-18 6.9E-23 186.2 14.9 177 520-752 21-203 (361)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 4.3E-18 1.5E-22 169.6 15.5 155 544-755 15-170 (220)
107 3e6j_A Variable lymphocyte rec 99.8 6.3E-18 2.1E-22 169.6 16.3 155 542-754 21-175 (229)
108 1h6t_A Internalin B; cell adhe 99.8 6E-18 2E-22 176.4 16.6 80 691-776 135-214 (291)
109 2v9t_B SLIT homolog 2 protein 99.8 7.8E-18 2.7E-22 167.7 16.2 153 543-752 14-166 (220)
110 1h6t_A Internalin B; cell adhe 99.7 4.8E-18 1.6E-22 177.1 13.4 188 472-752 27-214 (291)
111 1m9s_A Internalin B; cell inva 99.7 5.1E-18 1.8E-22 193.9 14.4 148 468-627 42-189 (605)
112 1m9s_A Internalin B; cell inva 99.7 5.2E-18 1.8E-22 193.9 12.7 193 422-630 22-214 (605)
113 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.8E-22 163.0 13.0 154 562-776 41-195 (197)
114 1dce_A Protein (RAB geranylger 99.7 2.7E-20 9.3E-25 211.5 -7.7 76 691-768 487-566 (567)
115 1xeu_A Internalin C; cellular 99.7 3.2E-17 1.1E-21 168.0 12.0 168 541-777 20-187 (263)
116 4b8c_D Glucose-repressible alc 99.7 1.4E-18 4.9E-23 203.8 1.2 199 21-244 129-333 (727)
117 4ezg_A Putative uncharacterize 99.7 7E-17 2.4E-21 158.0 12.2 133 561-752 62-195 (197)
118 1w8a_A SLIT protein; signaling 99.7 1.3E-16 4.6E-21 155.1 13.4 131 568-754 11-142 (192)
119 1dce_A Protein (RAB geranylger 99.7 1.3E-18 4.5E-23 197.7 -2.8 191 514-781 346-552 (567)
120 1xeu_A Internalin C; cellular 99.7 1E-16 3.4E-21 164.4 10.5 150 466-628 38-187 (263)
121 4b8c_D Glucose-repressible alc 99.7 1.5E-17 5.2E-22 195.1 4.6 132 469-634 173-313 (727)
122 1w8a_A SLIT protein; signaling 99.7 4.8E-16 1.6E-20 151.1 12.5 89 691-779 55-143 (192)
123 2ell_A Acidic leucine-rich nuc 99.6 9.7E-16 3.3E-20 145.7 11.4 134 589-777 24-162 (168)
124 2ell_A Acidic leucine-rich nuc 99.6 6.8E-16 2.3E-20 146.7 9.5 138 564-757 23-165 (168)
125 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.8E-20 142.0 10.4 128 589-771 17-149 (149)
126 2wfh_A SLIT homolog 2 protein 99.6 3.5E-15 1.2E-19 144.9 13.9 62 568-633 13-74 (193)
127 3sb4_A Hypothetical leucine ri 99.6 7.1E-16 2.4E-20 164.1 9.6 76 691-768 251-327 (329)
128 2o6r_A Variable lymphocyte rec 99.6 4.9E-15 1.7E-19 142.1 14.0 89 691-779 53-141 (177)
129 2je0_A Acidic leucine-rich nuc 99.6 1.3E-15 4.4E-20 141.6 7.4 129 564-747 16-149 (149)
130 3sb4_A Hypothetical leucine ri 99.6 1.8E-15 6.2E-20 160.9 9.3 195 420-619 100-327 (329)
131 2wfh_A SLIT homolog 2 protein 99.6 8.7E-15 3E-19 142.1 13.2 86 691-776 55-140 (193)
132 2o6r_A Variable lymphocyte rec 99.6 1.6E-14 5.4E-19 138.5 13.9 133 567-755 9-141 (177)
133 4fdw_A Leucine rich hypothetic 99.6 1.3E-13 4.4E-18 149.7 22.0 265 444-774 112-382 (401)
134 1a9n_A U2A', U2A'; complex (nu 99.5 3.8E-14 1.3E-18 135.6 9.9 84 691-776 65-154 (176)
135 4fdw_A Leucine rich hypothetic 99.5 6.8E-13 2.3E-17 143.9 20.9 251 412-751 127-383 (401)
136 1a9n_A U2A', U2A'; complex (nu 99.5 4.4E-14 1.5E-18 135.2 8.9 133 561-751 15-153 (176)
137 1ds9_A Outer arm dynein; leuci 99.5 2.3E-16 7.7E-21 154.5 -8.0 151 565-775 18-185 (198)
138 4fs7_A Uncharacterized protein 99.5 1.3E-12 4.6E-17 142.4 20.3 244 331-622 63-306 (394)
139 4fs7_A Uncharacterized protein 99.4 2.8E-12 9.6E-17 139.8 20.5 263 310-621 66-328 (394)
140 3g39_A Variable lymphocyte rec 99.4 3.5E-13 1.2E-17 127.8 11.5 89 691-779 31-119 (170)
141 3g39_A Variable lymphocyte rec 99.4 1E-12 3.6E-17 124.5 12.5 108 591-754 11-118 (170)
142 2r9u_A Variable lymphocyte rec 99.4 8.7E-13 3E-17 125.5 11.6 89 691-779 34-122 (174)
143 1ds9_A Outer arm dynein; leuci 99.4 4.5E-15 1.5E-19 145.2 -6.2 138 585-780 14-158 (198)
144 2r9u_A Variable lymphocyte rec 99.4 2.3E-12 7.9E-17 122.5 12.4 106 592-753 15-120 (174)
145 2ifg_A High affinity nerve gro 99.3 3E-12 1E-16 137.2 9.1 110 694-829 12-123 (347)
146 3un9_A NLR family member X1; l 99.2 3.4E-13 1.2E-17 144.8 -2.1 87 540-626 72-168 (372)
147 4gt6_A Cell surface protein; l 99.2 6.6E-10 2.3E-14 121.0 21.7 138 376-527 51-192 (394)
148 2ifg_A High affinity nerve gro 99.2 4.6E-11 1.6E-15 127.9 10.5 86 691-777 32-118 (347)
149 4gt6_A Cell surface protein; l 99.2 1.7E-09 5.8E-14 117.7 22.2 78 691-773 312-389 (394)
150 3un9_A NLR family member X1; l 99.1 1.5E-12 5.3E-17 139.8 -3.8 187 316-530 73-283 (372)
151 4h09_A Hypothetical leucine ri 98.9 2.1E-07 7.1E-12 100.6 23.7 69 691-761 287-355 (379)
152 4h09_A Hypothetical leucine ri 98.9 2.8E-07 9.5E-12 99.6 24.5 126 556-738 231-356 (379)
153 2ra8_A Uncharacterized protein 98.7 8E-09 2.7E-13 109.8 5.8 83 689-773 251-341 (362)
154 2ra8_A Uncharacterized protein 98.7 5.9E-09 2E-13 110.8 4.7 156 464-624 167-341 (362)
155 3rw6_A Nuclear RNA export fact 98.6 3.4E-09 1.1E-13 106.6 0.0 22 54-75 76-97 (267)
156 1io0_A Tropomodulin; LRR prote 98.6 2.1E-08 7.3E-13 96.0 4.8 119 94-212 32-163 (185)
157 1io0_A Tropomodulin; LRR prote 98.4 8.6E-08 2.9E-12 91.7 4.1 92 122-213 32-136 (185)
158 3rw6_A Nuclear RNA export fact 98.4 3.8E-07 1.3E-11 91.5 6.7 78 689-768 169-257 (267)
159 3rfe_A Platelet glycoprotein I 98.0 8.7E-06 3E-10 72.2 6.2 56 694-751 12-68 (130)
160 3e4g_A ATP synthase subunit S, 98.0 4E-06 1.4E-10 77.8 3.8 34 177-210 115-149 (176)
161 3e4g_A ATP synthase subunit S, 97.7 1.2E-05 4.1E-10 74.6 1.9 34 422-455 62-95 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 5E-05 1.7E-09 71.9 4.4 91 95-185 38-135 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00017 5.7E-09 68.3 4.3 70 122-191 37-113 (197)
164 3rfe_A Platelet glycoprotein I 96.8 0.0019 6.5E-08 57.0 6.6 57 717-775 11-68 (130)
165 2lz0_A Uncharacterized protein 31.9 55 0.0019 26.4 4.6 38 463-501 14-51 (100)
166 2lz0_A Uncharacterized protein 31.1 81 0.0028 25.4 5.5 43 436-479 11-53 (100)
167 3ox7_P MH027; urokinase-type p 28.2 18 0.00061 19.3 0.6 11 53-63 5-15 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.7e-87 Score=799.39 Aligned_cols=708 Identities=27% Similarity=0.379 Sum_probs=500.5
Q ss_pred cCCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCcccccccccccCcccccC
Q 037427 17 GTEGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTP 96 (829)
Q Consensus 17 ~~~~~~~~~~~~ll~~k~~~~~~~~~l~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~ 96 (829)
++..+.++||+||++||+++.++. .+++|. +++|||+|+||+|+ +|||++|+|++.++ .|....-+..+..
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~~l---~g~~~~l~~~l~~ 75 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSKPL---NVGFSAVSSSLLS 75 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTSCC---CEEHHHHHHHTTT
T ss_pred ccccCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCCCCc---CCccCccChhHhc
Confidence 455668999999999999998766 899996 46799999999998 69999999998865 2220001246788
Q ss_pred CCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchh--hhcCCCCCCEEEcCCCcCCccCCccccc-c
Q 037427 97 FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFS--SLAGLSSLRTLSLGYNRLKGSIDVKETL-D 173 (829)
Q Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~l~~L~~L~~L~Ls~n~i~~~~p~~~~l-~ 173 (829)
+++|+.++++.+.+... +. .++++++|++|||++|.+++.+|. .++++++|++|+|++|.+.+.+| ..+ .
T Consensus 76 L~~L~~l~~~~~~~~~l-~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~ 148 (768)
T 3rgz_A 76 LTGLESLFLSNSHINGS-VS----GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK--VSGGL 148 (768)
T ss_dssp CTTCCEEECTTSCEEEC-CC----CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSS--CCSCC
T ss_pred cCcccccCCcCCCcCCC-ch----hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCC--HHHhc
Confidence 89999999998876542 22 389999999999999999998888 99999999999999999998877 344 8
Q ss_pred CCCCCCEEecCCCCCCchhhHh---hhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccCCccCcc
Q 037427 174 NFTNLEDLTLDYSSLHISILKS---IAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQ 250 (829)
Q Consensus 174 ~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~ 250 (829)
++++|++|+|++|.+++..+.. +.++++|++|++++|.+.+..| +..+++|++|++++|.+++.+|.
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~----- 218 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-----VSRCVNLEFLDVSSNNFSTGIPF----- 218 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-----CTTCTTCCEEECCSSCCCSCCCB-----
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-----cccCCcCCEEECcCCcCCCCCcc-----
Confidence 9999999999999999988877 8899999999999999987653 47899999999999999986663
Q ss_pred cccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCC
Q 037427 251 LTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHAT 330 (829)
Q Consensus 251 ~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~ 330 (829)
++++++|++|++++|.+++.++ ..+.++++|+.|++++|.+...
T Consensus 219 ---------l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~-------------------------- 262 (768)
T 3rgz_A 219 ---------LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGP-------------------------- 262 (768)
T ss_dssp ---------CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEES--------------------------
T ss_pred ---------cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCc--------------------------
Confidence 4889999999999999987655 4577888888877777766532
Q ss_pred cChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchh-hh
Q 037427 331 FPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLE-IG 409 (829)
Q Consensus 331 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~-~~ 409 (829)
+|.. .+++|++|++++|++.+.+|..+...+++|++|++++|.+++..|..+..+++|++|++++|.++|.+|.. +.
T Consensus 263 ~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~ 340 (768)
T 3rgz_A 263 IPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340 (768)
T ss_dssp CCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT
T ss_pred cCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh
Confidence 2222 44455555555555555555543333355555555555555555555555555555555555555555543 22
Q ss_pred hccccccccCCCcccEEEcccccccccCcccccccc-CCcEEecccccCCCccCccCCC--CCCCcEEECCCCcCCCCcc
Q 037427 410 VYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLR-KLARLHLDANYFTGEIPKSLSN--CSRLEGLYMSDNNLYGNIP 486 (829)
Q Consensus 410 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~p 486 (829)
.+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+.. +++|++|++++|++++.+|
T Consensus 341 ---------~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 411 (768)
T 3rgz_A 341 ---------KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411 (768)
T ss_dssp ---------TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC
T ss_pred ---------cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC
Confidence 234566666666666655666555555 6666666666666655555544 5566666666666666666
Q ss_pred cccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCC
Q 037427 487 ARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRS 565 (829)
Q Consensus 487 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~ 565 (829)
..+.++++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..+ .+++|++|++++|++.+.+|.. +.+++
T Consensus 412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~ 490 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCT 490 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCT
T ss_pred HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-HhcCC
Confidence 666666666666666666666666666666666666666666666666555 5666666666666666666655 67777
Q ss_pred CccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCC
Q 037427 566 SIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNV 645 (829)
Q Consensus 566 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~ 645 (829)
+|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+............
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~ 570 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTT
T ss_pred CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcc
Confidence 77777777777777777777777777777777777777777777777777777777777777777665543211000000
Q ss_pred C--------CC-CCCC-CCCCccceecCCCccc-----cccceeeecccc--eeeecCCCCCCcceEEcCCCcCCCCCCc
Q 037427 646 G--------SS-APTF-NPNRRTTYFVGPSILE-----KEESIMFTTKEI--SFSYKGKPLNKMYGVDLSCNKLTGEIPP 708 (829)
Q Consensus 646 ~--------~~-~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~ip~ 708 (829)
. .. .... ........+.+..... ......+..... ........+++|+.|||++|+++|.+|.
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~ 650 (768)
T 3rgz_A 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650 (768)
T ss_dssp CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG
T ss_pred ccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH
Confidence 0 00 0000 0000000011111000 000000000000 0011123467899999999999999999
Q ss_pred ccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCCCCCCCCC
Q 037427 709 QIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKT 788 (829)
Q Consensus 709 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~ 788 (829)
.++.+++|+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|+.+..+++|++||+++|+|+|.||++++|....
T Consensus 651 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~ 730 (768)
T 3rgz_A 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 730 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSC
T ss_pred HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999885433
Q ss_pred --cCCCCCCccc
Q 037427 789 --WPCNGDYQCR 798 (829)
Q Consensus 789 --~~~~~~~~~~ 798 (829)
...++.++|.
T Consensus 731 ~~~~~gN~~Lcg 742 (768)
T 3rgz_A 731 PAKFLNNPGLCG 742 (768)
T ss_dssp GGGGCSCTEEES
T ss_pred HHHhcCCchhcC
Confidence 2234555553
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-71 Score=663.90 Aligned_cols=596 Identities=27% Similarity=0.343 Sum_probs=533.4
Q ss_pred ccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhh-cCCCCCCEEEcCCCcCCccCCccc
Q 037427 92 SLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSL-AGLSSLRTLSLGYNRLKGSIDVKE 170 (829)
Q Consensus 92 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~L~~L~~L~Ls~n~i~~~~p~~~ 170 (829)
..+..+++|++|||++|.+.+.++.. ..++++++|++|+|++|.+.+.+|..+ .++++|++|+|++|.+++..| .
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~ 169 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV--V 169 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETH--H
T ss_pred hhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCC--h
Confidence 46889999999999999999877651 138999999999999999988888766 899999999999999998766 4
Q ss_pred c---ccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccC-Cc
Q 037427 171 T---LDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP-CL 246 (829)
Q Consensus 171 ~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p-~l 246 (829)
. +.++++|++|++++|.+++..+ +..+++|++|++++|.+.+.+|. ++++++|++|++++|.+++.+| .+
T Consensus 170 ~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~l 243 (768)
T 3rgz_A 170 GWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF----LGDCSALQHLDISGNKLSGDFSRAI 243 (768)
T ss_dssp HHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB----CTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred hhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc----cccCCCCCEEECcCCcCCCcccHHH
Confidence 4 8899999999999999987765 48999999999999999987664 8899999999999999998777 55
Q ss_pred cCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCC
Q 037427 247 YLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSD 326 (829)
Q Consensus 247 ~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~ 326 (829)
..+++|++|++++|.+.+.++.. .+++|+.|++++|.+........ .....+|++|++++|.
T Consensus 244 --------------~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~-~~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 244 --------------STCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFL-SGACDTLTGLDLSGNH 305 (768)
T ss_dssp --------------TTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCS-CTTCTTCSEEECCSSE
T ss_pred --------------hcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHH-HhhcCcCCEEECcCCc
Confidence 88999999999999999877653 89999999999999984322211 1123689999999999
Q ss_pred CCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCC-CCCEEEccCCcccccCc
Q 037427 327 IHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHW-HLDALHVSKNFFQGNIP 405 (829)
Q Consensus 327 l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~ls~n~l~~~ip 405 (829)
+.+.+|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|
T Consensus 306 l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~ 385 (768)
T 3rgz_A 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385 (768)
T ss_dssp EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC
T ss_pred CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC
Confidence 99999999999999999999999999999988788999999999999999998999888887 99999999999999888
Q ss_pred hhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCc
Q 037427 406 LEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNI 485 (829)
Q Consensus 406 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 485 (829)
..+... .+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|.+.+.+
T Consensus 386 ~~~~~~-------~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 458 (768)
T 3rgz_A 386 PNLCQN-------PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458 (768)
T ss_dssp TTTTCS-------TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred hhhhhc-------ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC
Confidence 765431 2468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCC
Q 037427 486 PARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNR 564 (829)
Q Consensus 486 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l 564 (829)
|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+ .+++|++|++++|++.+.+|.. +..+
T Consensus 459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l 537 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDC 537 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGC
T ss_pred CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCC
Confidence 9999999999999999999999999999999999999999999999999887 8999999999999999999987 9999
Q ss_pred CCccEEEccCCcCCCcchhhhhcCCCCC----------------------------------------------EEEccC
Q 037427 565 SSIVTLDLSYNSFSGNIPYWIERLIRLR----------------------------------------------YLILAN 598 (829)
Q Consensus 565 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----------------------------------------------~L~L~~ 598 (829)
++|++|++++|+++|.+|.++.....+. .++++.
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 9999999999999999998876644333 234455
Q ss_pred CcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecc
Q 037427 599 NNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTK 678 (829)
Q Consensus 599 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (829)
|.+.|.+|..+..+++|+.||+++|+++|.+|..++++.
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~----------------------------------------- 656 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP----------------------------------------- 656 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT-----------------------------------------
T ss_pred ceecccCchhhhccccccEEECcCCcccccCCHHHhccc-----------------------------------------
Confidence 788888999999999999999999999999999888766
Q ss_pred cceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCccc
Q 037427 679 EISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQL 758 (829)
Q Consensus 679 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l 758 (829)
.|+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|..++++++|++|||++|+++|.||+.
T Consensus 657 ------------~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~- 723 (768)
T 3rgz_A 657 ------------YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM- 723 (768)
T ss_dssp ------------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-
T ss_pred ------------cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-
Confidence 8999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ccCCCCcEEeccCCc-ceee
Q 037427 759 VELNALVVFSVAHNN-LSAA 777 (829)
Q Consensus 759 ~~l~~L~~L~ls~N~-l~g~ 777 (829)
..+..+....+.+|+ |+|.
T Consensus 724 ~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 724 GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp SSGGGSCGGGGCSCTEEEST
T ss_pred hhhccCCHHHhcCCchhcCC
Confidence 334555666778884 7774
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.7e-61 Score=566.14 Aligned_cols=578 Identities=21% Similarity=0.216 Sum_probs=442.9
Q ss_pred CCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCC
Q 037427 98 QQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTN 177 (829)
Q Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~ 177 (829)
+++++|+|++|.+++..+.. |.++++|++|+|++|.+++..|.+|+++++|++|+|++|.+++..+ ..|+++++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAAN----FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD--KTFAFCTN 98 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGG----GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT--TTTTTCTT
T ss_pred CCCcEEECCCCCCCCcCHHH----HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh--hhhccCCC
Confidence 67888888888887766543 7778888888888888887778888888888888888888774333 46788888
Q ss_pred CCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccC-CccCcccccccC
Q 037427 178 LEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP-CLYLNQLTGNIS 256 (829)
Q Consensus 178 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p-~l~~~~~~g~i~ 256 (829)
|++|++++|.+++..+..|+++++|++|++++|.+.+..|. .++++++|++|++++|.+++..| .+
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~---------- 165 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG---TQVQLENLQELLLSNNKIQALKSEEL---------- 165 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC---SSSCCTTCCEEECCSSCCCCBCHHHH----------
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch---hhcccccCCEEEccCCcccccCHHHh----------
Confidence 88888888888777777788888888888888887776666 56777888888888887765433 11
Q ss_pred CCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhh
Q 037427 257 SSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLY 336 (829)
Q Consensus 257 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~ 336 (829)
.+..+++|++|++++|.+++..+ ..+..++ +|+.++++++.+.......+.
T Consensus 166 --~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~--------------------------~L~~L~l~~~~l~~~~~~~~~ 216 (680)
T 1ziw_A 166 --DIFANSSLKKLELSSNQIKEFSP-GCFHAIG--------------------------RLFGLFLNNVQLGPSLTEKLC 216 (680)
T ss_dssp --GGGTTCEESEEECTTCCCCCBCT-TGGGGSS--------------------------EECEEECTTCCCHHHHHHHHH
T ss_pred --hccccccccEEECCCCcccccCh-hhhhhhh--------------------------hhhhhhccccccChhhHHHHH
Confidence 01245677777777777764332 3344443 455566666665432222211
Q ss_pred ---CCCCcCEEEcCCCCCCCCCchHHhhcCC--CCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhc
Q 037427 337 ---NQHDLELVDFSDSNLKGEFPNWLLKNNP--NLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVY 411 (829)
Q Consensus 337 ---~~~~L~~L~Ls~n~l~~~~p~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~ 411 (829)
..++|+.|++++|.+.+..|.+ +..++ +|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.
T Consensus 217 ~~l~~~~L~~L~L~~n~l~~~~~~~-~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-- 293 (680)
T 1ziw_A 217 LELANTSIRNLSLSNSQLSTTSNTT-FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-- 293 (680)
T ss_dssp HHHTTSCCCEEECTTSCCCEECTTT-TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT--
T ss_pred HHhhhccccEEEccCCcccccChhH-hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhc--
Confidence 3478999999999998777766 55564 499999999999988888899999999999999999876655443
Q ss_pred cccccccCCCcccEEEcccccccc-----cCcc----ccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCC
Q 037427 412 FPSHLAMGCFNLEYLVLSENSLHG-----QLFS----KKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLY 482 (829)
Q Consensus 412 l~~~~~~~~~~L~~L~L~~n~l~~-----~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 482 (829)
++++|++|++++|...+ .+|. .+..+++|++|++++|.+++..+..|.++++|++|++++|.+.
T Consensus 294 -------~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 294 -------GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp -------TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred -------CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchh
Confidence 46799999999876543 2222 5778899999999999999888888999999999999999764
Q ss_pred CCc--ccccCC--CCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCC-CC-CCCcccEEEccCCcccCcC
Q 037427 483 GNI--PARLGN--LSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPS-CS-SHSTIQQVHLSKNMLYGPL 556 (829)
Q Consensus 483 ~~~--p~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~-~~~~L~~L~L~~n~l~~~~ 556 (829)
... +..+.. .++|+.|++++|++++..|..|..+++|+.|++++|.+++.+|. .+ .+++|++|++++|++.+..
T Consensus 367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence 322 222332 35899999999999988888899999999999999999877764 33 7889999999999986655
Q ss_pred CccccCCCCCccEEEccCCcCC--CcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCcc
Q 037427 557 KYGTFFNRSSIVTLDLSYNSFS--GNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLD 634 (829)
Q Consensus 557 ~~~~l~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 634 (829)
+.. |..+++|+.|++++|.+. +..|..+..+++|++|++++|++++..+..+.++++|++|++++|++++..+..+.
T Consensus 447 ~~~-~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 525 (680)
T 1ziw_A 447 RNS-FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525 (680)
T ss_dssp TTT-TTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTST
T ss_pred hhh-hhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhcc
Confidence 544 888999999999999886 56788899999999999999999987778899999999999999998764332211
Q ss_pred CCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCC
Q 037427 635 NTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLT 714 (829)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 714 (829)
.... .....+++|+.|+|++|+++...+..|.+++
T Consensus 526 ~~~~---------------------------------------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 526 GGPI---------------------------------------------YFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp TSCC---------------------------------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCcc---------------------------------------------hhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 1000 0002345889999999999955555789999
Q ss_pred CCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccc-cCCCCcEEeccCCcceeecC
Q 037427 715 NIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLV-ELNALVVFSVAHNNLSAAER 779 (829)
Q Consensus 715 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~ip 779 (829)
+|++|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+.+++++|++.+.-+
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 999999999999987777888999999999999999988877777 78899999999998886543
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.8e-59 Score=552.08 Aligned_cols=584 Identities=20% Similarity=0.209 Sum_probs=470.0
Q ss_pred CCcEEEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhh
Q 037427 67 TGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSL 146 (829)
Q Consensus 67 ~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 146 (829)
..+|+.|+|+++.+. .+.+..|.++++|++|+|++|.+++..+.. +.++++|++|+|++|.+++..+.+|
T Consensus 24 ~~~l~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~ 93 (680)
T 1ziw_A 24 PTNITVLNLTHNQLR------RLPAANFTRYSQLTSLDVGFNTISKLEPEL----CQKLPMLKVLNLQHNELSQLSDKTF 93 (680)
T ss_dssp CTTCSEEECCSSCCC------CCCGGGGGGGTTCSEEECCSSCCCCCCTTH----HHHCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCcEEECCCCCCC------CcCHHHHhCCCcCcEEECCCCccCccCHHH----HhcccCcCEEECCCCccCccChhhh
Confidence 458999999998752 245567899999999999999999887764 8899999999999999997766789
Q ss_pred cCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCC
Q 037427 147 AGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRL 226 (829)
Q Consensus 147 ~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l 226 (829)
+++++|++|+|++|.+++..| ..|+++++|++|++++|.+++..+..++++++|++|++++|.+++..+..+ ....+
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~ 170 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKN--NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL-DIFAN 170 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCS--CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH-GGGTT
T ss_pred ccCCCCCEEECCCCccCccCh--hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHh-hcccc
Confidence 999999999999999987655 689999999999999999999989999999999999999999987655411 13356
Q ss_pred CCCcEEECCCccCccccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccC
Q 037427 227 GHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPE 306 (829)
Q Consensus 227 ~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 306 (829)
++|++|++++|.+++..| ..+..+++|+.|+++++.+.+..... +..
T Consensus 171 ~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~l~~~~l~~~~~~~-~~~------------------- 217 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSP-------------GCFHAIGRLFGLFLNNVQLGPSLTEK-LCL------------------- 217 (680)
T ss_dssp CEESEEECTTCCCCCBCT-------------TGGGGSSEECEEECTTCCCHHHHHHH-HHH-------------------
T ss_pred ccccEEECCCCcccccCh-------------hhhhhhhhhhhhhccccccChhhHHH-HHH-------------------
Confidence 899999999999986554 33478899999999998876322111 000
Q ss_pred CCCCCCCCcCccEEEccCCCCCCCcChhhhCCCC--cCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCC
Q 037427 307 SSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHD--LELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPI 384 (829)
Q Consensus 307 ~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~--L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 384 (829)
.....+|++|++++|.+.+..|.++..++. |++|++++|++.+..|.. ++.+++|++|++++|.+++..+..+
T Consensus 218 ----~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (680)
T 1ziw_A 218 ----ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSL 292 (680)
T ss_dssp ----HHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSCCBSEECTTTT
T ss_pred ----HhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc-ccCcccccEeeCCCCccCccChhhh
Confidence 001125667777777777777777777654 888888888887555554 6778888888888888888777788
Q ss_pred CCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCc--cC
Q 037427 385 QPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGE--IP 462 (829)
Q Consensus 385 ~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~ 462 (829)
..+++|+.|++++|...+.++..-...+....+..+++|++|++++|.+++..+..+..+++|++|++++|.+... .+
T Consensus 293 ~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~ 372 (680)
T 1ziw_A 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372 (680)
T ss_dssp TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECT
T ss_pred cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcch
Confidence 8888888888887766553331111112233455678999999999999988888888999999999999876432 12
Q ss_pred ccCCC--CCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCCh-hhhhCCCCCCEEeCCCCcCcccCCCCC-C
Q 037427 463 KSLSN--CSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIP-LEFCQLNYLEILDLSENNISGSLPSCS-S 538 (829)
Q Consensus 463 ~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~ 538 (829)
..|.. .++|+.|++++|++++..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|++.+..+..+ .
T Consensus 373 ~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 452 (680)
T 1ziw_A 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452 (680)
T ss_dssp TTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTT
T ss_pred hhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhc
Confidence 23332 2589999999999998888899999999999999999987655 678899999999999999987777666 7
Q ss_pred CCcccEEEccCCccc--CcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCC--------cc
Q 037427 539 HSTIQQVHLSKNMLY--GPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVP--------NQ 608 (829)
Q Consensus 539 ~~~L~~L~L~~n~l~--~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--------~~ 608 (829)
+++|+.|++++|.+. +.+|.. +..+++|++|++++|++++..+..+.++++|++|++++|++++..+ ..
T Consensus 453 ~~~L~~L~l~~n~l~~~~~~p~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 531 (680)
T 1ziw_A 453 VPSLQRLMLRRVALKNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531 (680)
T ss_dssp CTTCCEEECTTSCCBCTTCSSCT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCT
T ss_pred CcccccchhccccccccccCCcc-cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchh
Confidence 889999999999886 456665 8999999999999999998888889999999999999999986422 23
Q ss_pred cCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCC
Q 037427 609 LCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKP 688 (829)
Q Consensus 609 l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (829)
+.++++|++|++++|+++...+..|..+.
T Consensus 532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~--------------------------------------------------- 560 (680)
T 1ziw_A 532 LKGLSHLHILNLESNGFDEIPVEVFKDLF--------------------------------------------------- 560 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCT---------------------------------------------------
T ss_pred hcCCCCCCEEECCCCCCCCCCHHHccccc---------------------------------------------------
Confidence 78899999999999999844334455544
Q ss_pred CCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCcccccc-ccccCCeeecCCCcCcccCC
Q 037427 689 LNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFS-NLNQVESLDVSHNNLNGKIP 755 (829)
Q Consensus 689 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~LdLs~N~l~~~ip 755 (829)
+|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..+. .+++|+.|++++|++....+
T Consensus 561 --~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 561 --ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp --TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred --CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 899999999999987777889999999999999999999988888 78999999999999987554
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.9e-55 Score=508.69 Aligned_cols=521 Identities=19% Similarity=0.184 Sum_probs=374.4
Q ss_pred CCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCC
Q 037427 99 QLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNL 178 (829)
Q Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L 178 (829)
.+++|+|++|.+++..+.+ |.++++|++|+|++|.+.+..|.+|+++++|++|+|++|.+++..| ..|+++++|
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L 107 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTT----FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE--TALSGPKAL 107 (606)
T ss_dssp TCCEEECTTCCCSEECTTT----STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT--TTTSSCTTC
T ss_pred cCcEEEccCCccCcCChhH----hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh--hhhcccccc
Confidence 5667777777766655543 6666667777777666666666666666666666666666665545 556666666
Q ss_pred CEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccCCC
Q 037427 179 EDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSS 258 (829)
Q Consensus 179 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~ 258 (829)
++|++++|.+++..+..++++++|++|++++|.+.+..+. .+..+++|++|++++|.+++..| .
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~-------------~ 171 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP---KGFPTEKLKVLDFQNNAIHYLSK-------------E 171 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC---TTCCCTTCCEEECCSSCCCEECH-------------H
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc---cccCCcccCEEEcccCcccccCh-------------h
Confidence 6666666666655555566666666666666655543211 22335555555555555543222 1
Q ss_pred CCCCCCCCC--EEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhh
Q 037427 259 PLIHLTSIE--RLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLY 336 (829)
Q Consensus 259 ~l~~l~~L~--~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~ 336 (829)
.++.+++|+ .|++++|.+.+ ..|..+.
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~---------------------------------------------------~~~~~~~ 200 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAG---------------------------------------------------IEPGAFD 200 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCE---------------------------------------------------ECTTTTT
T ss_pred hhhhhcccceeEEecCCCccCc---------------------------------------------------cChhHhh
Confidence 113334444 34444444332 2222222
Q ss_pred CCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhcccccc
Q 037427 337 NQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHL 416 (829)
Q Consensus 337 ~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~ 416 (829)
. .+|+.|++++|. .++.. +..+.+++...+....+.+ +...++....+. .+..
T Consensus 201 ~-~~L~~L~l~~~~---~~~~~-~~~l~~~~l~~l~~~~~~~-----------~~~~~i~~~~~~-----~l~~------ 253 (606)
T 3t6q_A 201 S-AVFQSLNFGGTQ---NLLVI-FKGLKNSTIQSLWLGTFED-----------MDDEDISPAVFE-----GLCE------ 253 (606)
T ss_dssp T-CEEEEEECTTCS---CHHHH-HHHTTTCEEEEEECCCCTT-----------SCCCCCCGGGGG-----GGGG------
T ss_pred h-ccccccccCCch---hHHHH-hhhccccchhheechhhcc-----------ccccccChhHhc-----hhhc------
Confidence 1 345555555554 22322 3445554444433322221 111111111111 1110
Q ss_pred ccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCC
Q 037427 417 AMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLN 496 (829)
Q Consensus 417 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 496 (829)
.+|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+.++++|++|++++|++.+..|..+..+++|+
T Consensus 254 ----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 254 ----MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp ----SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred ----CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence 27889999999998888888889999999999999998 6788889999999999999999988788899999999
Q ss_pred EEEccCCcccCCChh-hhhCCCCCCEEeCCCCcCcccC--CCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEc
Q 037427 497 DIMMASNHLQGPIPL-EFCQLNYLEILDLSENNISGSL--PSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDL 572 (829)
Q Consensus 497 ~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~--~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 572 (829)
+|++++|.+.+.++. .+..+++|++|++++|.+++.. +..+ .+++|++|++++|++.+..+.. +..+++|++|++
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l 407 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDL 407 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEEC
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEEC
Confidence 999999998866654 4888999999999999998664 4444 8899999999999997766655 889999999999
Q ss_pred cCCcCCCcchh-hhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCC-C--CCccCCCccCCCCCCCCC
Q 037427 573 SYNSFSGNIPY-WIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQI-P--GCLDNTSLHNNGDNVGSS 648 (829)
Q Consensus 573 s~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-p--~~~~~~~~~~~~~~~~~~ 648 (829)
++|++.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++.. | ..+..
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~------------- 474 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT------------- 474 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG-------------
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc-------------
Confidence 99999877654 4889999999999999999888999999999999999999997632 2 22332
Q ss_pred CCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCC
Q 037427 649 APTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTG 728 (829)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 728 (829)
+++|+.|++++|++++.+|..|+.+++|++|+|++|++++
T Consensus 475 ----------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 475 ----------------------------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp ----------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred ----------------------------------------CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 3489999999999999999999999999999999999999
Q ss_pred CccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecC
Q 037427 729 VIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAER 779 (829)
Q Consensus 729 ~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 779 (829)
.+|+.+.++++| .|||++|++++.+|..+..+++|+++++++|++++..+
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999 99999999999999999999999999999999998655
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.6e-54 Score=501.71 Aligned_cols=523 Identities=21% Similarity=0.205 Sum_probs=388.3
Q ss_pred CCcEEEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhh
Q 037427 67 TGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSL 146 (829)
Q Consensus 67 ~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 146 (829)
+..++.|+|+++.+. .+.+..|..+++|++|+|++|.+.+..+.+ |.++++|++|+|++|.+++..|..|
T Consensus 32 ~~~l~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 32 PNSTECLEFSFNVLP------TIQNTTFSRLINLTFLDLTRCQIYWIHEDT----FQSQHRLDTLVLTANPLIFMAETAL 101 (606)
T ss_dssp CTTCCEEECTTCCCS------EECTTTSTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCSEECTTTT
T ss_pred CCcCcEEEccCCccC------cCChhHhccCccceEEECCCCccceeChhh----ccCccccCeeeCCCCcccccChhhh
Confidence 357999999998763 245667899999999999999999887765 8999999999999999999889999
Q ss_pred cCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCC
Q 037427 147 AGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRL 226 (829)
Q Consensus 147 ~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l 226 (829)
+++++|++|++++|.+++..| ..++++++|++|++++|.+++..+..+..+++|++|++++|.+.+..|. .++.+
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l 176 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE---DMSSL 176 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGG--SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH---HHHTT
T ss_pred cccccccEeeccccCcccCCc--chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh---hhhhh
Confidence 999999999999999996544 6799999999999999999986545566699999999999999987666 78888
Q ss_pred CCCc--EEECCCccCccccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeec
Q 037427 227 GHLQ--ELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVE 304 (829)
Q Consensus 227 ~~L~--~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~ 304 (829)
++|+ +|++++|.+++..|.. ....+|+.|++++|... + ..+..+..++..
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~--------------~~~~~L~~L~l~~~~~~---~-~~~~~l~~~~l~---------- 228 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGA--------------FDSAVFQSLNFGGTQNL---L-VIFKGLKNSTIQ---------- 228 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTT--------------TTTCEEEEEECTTCSCH---H-HHHHHTTTCEEE----------
T ss_pred cccceeEEecCCCccCccChhH--------------hhhccccccccCCchhH---H-HHhhhccccchh----------
Confidence 9999 8999999999765522 34468999999988622 1 223333333222
Q ss_pred cCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCC--CCCEEEccCCcCcCCCCC
Q 037427 305 PESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNP--NLSTLVLRNNSLSGPFQT 382 (829)
Q Consensus 305 ~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~--~L~~L~L~~n~l~~~~~~ 382 (829)
.+.+.... .+.. . .++...+..+. +|++|++++|.+++..+.
T Consensus 229 --------------~l~~~~~~-------------~~~~-----~----~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 229 --------------SLWLGTFE-------------DMDD-----E----DISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp --------------EEECCCCT-------------TSCC-----C----CCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred --------------heechhhc-------------cccc-----c----ccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 22221110 0110 1 11111122222 566666666666665555
Q ss_pred CCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccC
Q 037427 383 PIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIP 462 (829)
Q Consensus 383 ~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 462 (829)
.+..+++|++|++++|.++ .+|..+. ++++|++|++++|.+++..+..+..+++|++|++++|.+.+.+|
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~---------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLV---------GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCC---------SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred HhccccCCCEEeccCCccC-CCChhhc---------ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 5666666666666666665 3443322 24566777777777666666666777777777777777765544
Q ss_pred c-cCCCCCCCcEEECCCCcCCCCc--ccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCC
Q 037427 463 K-SLSNCSRLEGLYMSDNNLYGNI--PARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSH 539 (829)
Q Consensus 463 ~-~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 539 (829)
. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|++.+..|..+..+++|++|++++|++.
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------- 413 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK--------- 413 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE---------
T ss_pred hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC---------
Confidence 3 3666777777777777776544 455666666666666666666555556666666666666666555
Q ss_pred CcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCccccc---CCcccCCCCCCC
Q 037427 540 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE---VPNQLCGLKQLR 616 (829)
Q Consensus 540 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~ 616 (829)
+..+...+..+++|++|++++|.+.+..|..+..+++|++|++++|++++. .+..+..+++|+
T Consensus 414 --------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 414 --------------VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp --------------CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred --------------CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence 333333467788888888888888888888888888999999999988762 235688899999
Q ss_pred EEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEE
Q 037427 617 LIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVD 696 (829)
Q Consensus 617 ~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 696 (829)
+|++++|++++..|..+..++ +|+.|+
T Consensus 480 ~L~Ls~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~ 506 (606)
T 3t6q_A 480 ILVLSFCDLSSIDQHAFTSLK-----------------------------------------------------MMNHVD 506 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCT-----------------------------------------------------TCCEEE
T ss_pred EEECCCCccCccChhhhcccc-----------------------------------------------------CCCEEE
Confidence 999999999888787776554 788999
Q ss_pred cCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCC
Q 037427 697 LSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP 755 (829)
Q Consensus 697 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip 755 (829)
+++|++++.+|..+..++.| .|++++|++++.+|..+..+++|+.|++++|++.+..+
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999999 99999999999999999999999999999999987655
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.9e-54 Score=500.85 Aligned_cols=524 Identities=19% Similarity=0.201 Sum_probs=323.2
Q ss_pred CCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCC
Q 037427 98 QQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTN 177 (829)
Q Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~ 177 (829)
++|++|+|++|.+++..+.. |.++++|++|++++|.+++..|.+|+++++|++|+|++|.+++..| ..|+++++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP--GSFSGLTS 105 (606)
T ss_dssp TTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT--TSSTTCTT
T ss_pred CCcCEEECCCCCcCEeChhh----ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh--hhcCCccc
Confidence 56666777776666655543 6666666666666666666666666666666666666666665545 55666666
Q ss_pred CCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCcc-ccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccC
Q 037427 178 LEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDG-ALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNIS 256 (829)
Q Consensus 178 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~ 256 (829)
|++|++++|.+++..+..++++++|++|++++|.+.+ .+|. .++++++|++|++++|.+++..|
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~---~~~~l~~L~~L~Ls~n~l~~~~~------------ 170 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA---YFSNLTNLVHVDLSYNYIQTITV------------ 170 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG---GGGTCTTCCEEECCSSCCCEECT------------
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH---hHhhcCCCCEEEccCCcceecCh------------
Confidence 6666666666665555556666666666666665554 2344 45555555555555555553222
Q ss_pred CCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhh
Q 037427 257 SSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLY 336 (829)
Q Consensus 257 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~ 336 (829)
..+..+++|+. .+++|++++|.+.+..+..+.
T Consensus 171 --------------------------~~~~~l~~L~~----------------------~l~~L~l~~n~l~~~~~~~~~ 202 (606)
T 3vq2_A 171 --------------------------NDLQFLRENPQ----------------------VNLSLDMSLNPIDFIQDQAFQ 202 (606)
T ss_dssp --------------------------TTTHHHHHCTT----------------------CCCEEECTTCCCCEECTTTTT
T ss_pred --------------------------hhhhhhhcccc----------------------ccceeeccCCCcceeCccccc
Confidence 12222222220 012223333333222222222
Q ss_pred CCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhcccccc
Q 037427 337 NQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHL 416 (829)
Q Consensus 337 ~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~ 416 (829)
.. +|+.|++++|.+.+...+..+++++.++.+++..+.+.+... +.. +.+..+..+..
T Consensus 203 ~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~--------l~~-------~~~~~~~~l~~------ 260 (606)
T 3vq2_A 203 GI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN--------LEI-------FEPSIMEGLCD------ 260 (606)
T ss_dssp TC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC--------CSC-------CCGGGGTTGGG------
T ss_pred Cc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc--------ccc-------cChHHhhhhhh------
Confidence 22 455555665555433333335566666666655444332100 000 00011111110
Q ss_pred ccCCCcccEEEc-ccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCC
Q 037427 417 AMGCFNLEYLVL-SENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSL 495 (829)
Q Consensus 417 ~~~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 495 (829)
..++.+++ ..+.+.+..+. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|
T Consensus 261 ----l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L 330 (606)
T 3vq2_A 261 ----VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFL 330 (606)
T ss_dssp ----SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSC
T ss_pred ----ccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCcc
Confidence 13455555 44455555554 555666666666666665 334 556666666666666666 3555 33 66666
Q ss_pred CEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccC--CCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEc
Q 037427 496 NDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSL--PSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDL 572 (829)
Q Consensus 496 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 572 (829)
++|++++|...+.. .+..+++|++|++++|.+++.. |..+ .+++|++|++++|.+.+ +|.. +..+++|++|++
T Consensus 331 ~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~-~~~l~~L~~L~l 406 (606)
T 3vq2_A 331 KSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN-FMGLEELQHLDF 406 (606)
T ss_dssp CEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCC-CTTCTTCCEEEC
T ss_pred ceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhh-ccCCCCCCeeEC
Confidence 66666666443322 3456666666666666665442 3333 55666666666666643 4433 777888888888
Q ss_pred cCCcCCCcch-hhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccC-CCCCccCCCccCCCCCCCCCCC
Q 037427 573 SYNSFSGNIP-YWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQ-IPGCLDNTSLHNNGDNVGSSAP 650 (829)
Q Consensus 573 s~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~ 650 (829)
++|++.+..| ..+..+++|++|++++|++++..|..+.++++|++|++++|++++. +|..++.+.
T Consensus 407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~------------- 473 (606)
T 3vq2_A 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT------------- 473 (606)
T ss_dssp TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-------------
T ss_pred CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC-------------
Confidence 8888877766 5677888888888888888877888888888888888888888763 566555544
Q ss_pred CCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCc
Q 037427 651 TFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVI 730 (829)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~ 730 (829)
+|++|++++|++++.+|..++.+++|++|+|++|++++.+
T Consensus 474 ----------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 513 (606)
T 3vq2_A 474 ----------------------------------------NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513 (606)
T ss_dssp ----------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE
T ss_pred ----------------------------------------CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC
Confidence 7888888888888888888888999999999999999888
Q ss_pred cccccccccCCeeecCCCcCcccCCcccccCC-CCcEEeccCCcceeecCC
Q 037427 731 PVSFSNLNQVESLDVSHNNLNGKIPPQLVELN-ALVVFSVAHNNLSAAERN 780 (829)
Q Consensus 731 p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~ip~ 780 (829)
|..|+++++|+.|||++|+++ .+|..+..++ +|+++++++|++.+..+.
T Consensus 514 ~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 514 SSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp GGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred HHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 888998999999999999988 6777788886 599999999998876553
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-53 Score=496.80 Aligned_cols=532 Identities=19% Similarity=0.221 Sum_probs=373.7
Q ss_pred cEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCE
Q 037427 101 ETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLED 180 (829)
Q Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~ 180 (829)
++++.+++.++..... +. ++|++|+|++|.+++..+..|+++++|++|+|++|.+++..| ..|+++++|++
T Consensus 14 ~~~~c~~~~l~~ip~~-----~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~--~~~~~l~~L~~ 84 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDD-----IP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED--KAWHGLHHLSN 84 (606)
T ss_dssp TEEECTTSCCSSCCTT-----SC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT--TTTTTCTTCCE
T ss_pred CceEccCCCcccCCCC-----CC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCH--HHhhchhhcCE
Confidence 5677777777654432 22 567777777777776666677777777777777777765544 55666666666
Q ss_pred EecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCcc-ccCCccCcccccccCCCC
Q 037427 181 LTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRG-TLPCLYLNQLTGNISSSP 259 (829)
Q Consensus 181 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g-~~p~l~~~~~~g~i~~~~ 259 (829)
|+|++|.+++..|..|+++++|++|++++|.+.+..+. .++++++|++|++++|.+++ .+| ..
T Consensus 85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~lp-------------~~ 148 (606)
T 3vq2_A 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF---PIGQLITLKKLNVAHNFIHSCKLP-------------AY 148 (606)
T ss_dssp EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSS---CCTTCTTCCEEECCSSCCCCCCCC-------------GG
T ss_pred eECCCCcccccChhhcCCcccCCEEEccCCcccccccc---ccCCCCCCCEEeCCCCcccceech-------------Hh
Confidence 66666666666566666666666666666665544333 45555555555555555442 222 11
Q ss_pred CCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCC
Q 037427 260 LIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQH 339 (829)
Q Consensus 260 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~ 339 (829)
++++++|++|++++|+++ +..|..+..++
T Consensus 149 ~~~l~~L~~L~Ls~n~l~---------------------------------------------------~~~~~~~~~l~ 177 (606)
T 3vq2_A 149 FSNLTNLVHVDLSYNYIQ---------------------------------------------------TITVNDLQFLR 177 (606)
T ss_dssp GGTCTTCCEEECCSSCCC---------------------------------------------------EECTTTTHHHH
T ss_pred HhhcCCCCEEEccCCcce---------------------------------------------------ecChhhhhhhh
Confidence 133333333333333221 12222222222
Q ss_pred C----cCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCccccc-Cchhhhhcccc
Q 037427 340 D----LELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGN-IPLEIGVYFPS 414 (829)
Q Consensus 340 ~----L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-ip~~~~~~l~~ 414 (829)
+ +.+|++++|.+. .+|.. .+... +|++|++++|.+.+. +|..+.
T Consensus 178 ~L~~~l~~L~l~~n~l~-~~~~~------------------------~~~~~-~L~~L~L~~n~~~~~~~~~~~~----- 226 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPID-FIQDQ------------------------AFQGI-KLHELTLRGNFNSSNIMKTCLQ----- 226 (606)
T ss_dssp HCTTCCCEEECTTCCCC-EECTT------------------------TTTTC-EEEEEEEESCCSCHHHHHHHHH-----
T ss_pred ccccccceeeccCCCcc-eeCcc------------------------cccCc-eeeeeeccCCccchhHHHHHhc-----
Confidence 2 235555555554 23332 22222 445555555544422 222221
Q ss_pred ccccCCCcccEEEcccccccc---------cCccccccccCCcEEec-ccccCCCccCccCCCCCCCcEEECCCCcCCCC
Q 037427 415 HLAMGCFNLEYLVLSENSLHG---------QLFSKKNYLRKLARLHL-DANYFTGEIPKSLSNCSRLEGLYMSDNNLYGN 484 (829)
Q Consensus 415 ~~~~~~~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 484 (829)
.++.|+.+++..+.+.+ ..+..+..+ .++.+++ ..|.+.+..|. +..+++|+.|++++|.+. .
T Consensus 227 ----~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~ 299 (606)
T 3vq2_A 227 ----NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-Y 299 (606)
T ss_dssp ----TTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-C
T ss_pred ----cccccccccccccccccCCcccccChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-h
Confidence 23445555544333221 112222222 4667777 77888888887 899999999999999997 4
Q ss_pred cccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCc--CCccccC
Q 037427 485 IPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGP--LKYGTFF 562 (829)
Q Consensus 485 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~l~ 562 (829)
+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|+..+.+ ....+++|++|++++|.+.+. ++.. +.
T Consensus 300 l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~ 373 (606)
T 3vq2_A 300 LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYS-DL 373 (606)
T ss_dssp CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHH-HH
T ss_pred hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhh-hc
Confidence 56 889999999999999999 5777 45 9999999999999766554 344889999999999999765 3555 88
Q ss_pred CCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCC-cccCCCCCCCEEECcCCcCccCCCCCccCCCccCC
Q 037427 563 NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVP-NQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNN 641 (829)
Q Consensus 563 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~ 641 (829)
.+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+..+.
T Consensus 374 ~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---- 448 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT---- 448 (606)
T ss_dssp CCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT----
T ss_pred cCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC----
Confidence 99999999999999885 56889999999999999999998877 6899999999999999999988888776654
Q ss_pred CCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCC-CCCcccccCCCCCEEE
Q 037427 642 GDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG-EIPPQIGKLTNIRALN 720 (829)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~L~ 720 (829)
+|++|++++|++++ .+|..++.+++|++|+
T Consensus 449 -------------------------------------------------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 449 -------------------------------------------------SLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479 (606)
T ss_dssp -------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred -------------------------------------------------CCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence 89999999999998 4799999999999999
Q ss_pred CCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCCCCCCCCCcCCCCCCccccc
Q 037427 721 FSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQCRID 800 (829)
Q Consensus 721 Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 800 (829)
|++|++++.+|..|+++++|++|+|++|++++.+|..+..+++|++|++++|+++. +|.. +. ..+
T Consensus 480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~--~~--~l~---------- 544 (606)
T 3vq2_A 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGI--LQ--HFP---------- 544 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESC--GG--GSC----------
T ss_pred CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHh--Hh--hhc----------
Confidence 99999999999999999999999999999999999999999999999999999994 5543 10 000
Q ss_pred cccCCCCCCcccchhhhcCCccccccccC
Q 037427 801 CSTMYNGEGHCKYVTAIYAPHTCICKYKC 829 (829)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~p~~C~c~~~~ 829 (829)
.....++..+|||.|+|+..|
T Consensus 545 --------~~L~~l~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 545 --------KSLAFFNLTNNSVACICEHQK 565 (606)
T ss_dssp --------TTCCEEECCSCCCCCSSTTHH
T ss_pred --------ccCcEEEccCCCcccCCccHH
Confidence 012347888889999998754
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-52 Score=506.38 Aligned_cols=541 Identities=22% Similarity=0.167 Sum_probs=343.3
Q ss_pred EEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCEE
Q 037427 102 TLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDL 181 (829)
Q Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L 181 (829)
..|.++++++.+.. -.++|++|||++|.+++..|..|.++++|++|+|++|...+.++ +..|+++++|++|
T Consensus 8 ~~dcs~~~L~~vP~--------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L 78 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRIL 78 (844)
T ss_dssp EEEESCCCSSCCCS--------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEE
T ss_pred EEEccCCCCCCCCC--------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccC-HHHhcCCCCCCEE
Confidence 45555555554321 13455666666666655555556666666666666554443331 1345555555555
Q ss_pred ecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccCCCCCC
Q 037427 182 TLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLI 261 (829)
Q Consensus 182 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~ 261 (829)
+|++|.+++..|..|+ ++++|++|++++|.+++.+|. ...+.
T Consensus 79 ~Ls~N~l~~~~p~~~~---------------------------~l~~L~~L~Ls~n~l~~~~~~-----------~~~~~ 120 (844)
T 3j0a_A 79 DLGSSKIYFLHPDAFQ---------------------------GLFHLFELRLYFCGLSDAVLK-----------DGYFR 120 (844)
T ss_dssp ECTTCCCCEECTTSSC---------------------------SCSSCCCEECTTCCCSSCCST-----------TCCCS
T ss_pred ECCCCcCcccCHhHcc---------------------------CCcccCEeeCcCCCCCccccc-----------Ccccc
Confidence 5555555444444444 444555555555544443320 11124
Q ss_pred CCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCC--C
Q 037427 262 HLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQ--H 339 (829)
Q Consensus 262 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~--~ 339 (829)
++++|++|+|++|.+.+..+...++++++|+.|++++| .+.+..+..+..+ +
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N--------------------------~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN--------------------------QIFLVCEHELEPLQGK 174 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS--------------------------CCCCCCSGGGHHHHHC
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC--------------------------cCCeeCHHHcccccCC
Confidence 55555555555555543333233444444444333333 3334444555555 7
Q ss_pred CcCEEEcCCCCCCCCCchHHhhcCCC------CCEEEccCCcCcCCCCCCCCC---CCCCCEEEccCCcccccCchhhhh
Q 037427 340 DLELVDFSDSNLKGEFPNWLLKNNPN------LSTLVLRNNSLSGPFQTPIQP---HWHLDALHVSKNFFQGNIPLEIGV 410 (829)
Q Consensus 340 ~L~~L~Ls~n~l~~~~p~~~~~~l~~------L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~ls~n~l~~~ip~~~~~ 410 (829)
+|+.|++++|.+.+..|.. ++.+++ |++|++++|.+++..+..+.. ..+++.+.++.+.........-..
T Consensus 175 ~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp SSCCCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred ccceEECCCCccccccccc-hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 8999999999998777654 334443 889999988888766655543 356778887744332111000000
Q ss_pred ccccccccC--CCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccc
Q 037427 411 YFPSHLAMG--CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPAR 488 (829)
Q Consensus 411 ~l~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 488 (829)
......+.+ .++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..|.++++|++|++++|.+++..|..
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence 011111222 257888888888888777778888888888888888888777778888888888888888888777888
Q ss_pred cCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCcc
Q 037427 489 LGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIV 568 (829)
Q Consensus 489 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 568 (829)
+..+++|++|++++|++.+..+..|..+++|++|++++|.+++. + .+++|+.|++++|++. .+|.. ..+++
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~---~~~~L~~L~l~~N~l~-~l~~~----~~~l~ 404 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H---FIPSIPDIFLSGNKLV-TLPKI----NLTAN 404 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S---SCCSCSEEEEESCCCC-CCCCC----CTTCC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-c---CCCCcchhccCCCCcc-ccccc----ccccc
Confidence 88888888888888888877777788888888888888887732 2 2677888888888885 44432 45678
Q ss_pred EEEccCCcCCCcc-hhhhhcCCCCCEEEccCCcccccCCc-ccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCC
Q 037427 569 TLDLSYNSFSGNI-PYWIERLIRLRYLILANNNLEGEVPN-QLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVG 646 (829)
Q Consensus 569 ~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 646 (829)
.|++++|++++.. +..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+.....-.
T Consensus 405 ~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~--------- 475 (844)
T 3j0a_A 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV--------- 475 (844)
T ss_dssp EEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC---------
T ss_pred eeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh---------
Confidence 8888888887642 33456778888888888888754433 355677888888888887643321110000
Q ss_pred CCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCC
Q 037427 647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNL 726 (829)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 726 (829)
...+++|+.|+|++|++++.+|..|..+++|+.|+|++|++
T Consensus 476 ---------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 516 (844)
T 3j0a_A 476 ---------------------------------------FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516 (844)
T ss_dssp ---------------------------------------SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCC
T ss_pred ---------------------------------------hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCC
Confidence 01234677788888888877777778888888888888888
Q ss_pred CCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeec
Q 037427 727 TGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAE 778 (829)
Q Consensus 727 ~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 778 (829)
++..|..+. ++|+.|||++|++++.+|..+. +|+.+++++|++.+..
T Consensus 517 ~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 517 TVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICEC 563 (844)
T ss_dssp SSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSS
T ss_pred CccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccc
Confidence 877666665 7788888888888877776653 6777888888776543
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-52 Score=499.95 Aligned_cols=517 Identities=21% Similarity=0.225 Sum_probs=420.0
Q ss_pred CCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccc-hhhhcCCCCCCEEEcCCCcCCccCCccccccCC
Q 037427 97 FQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSI-FSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNF 175 (829)
Q Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l 175 (829)
.++|++|||++|.+++..+.. |.++++|++|+|++|...+.+ |.+|+++++|++|+|++|.+.+..| ..|+++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~----~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p--~~~~~l 96 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASS----FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP--DAFQGL 96 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSS----CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT--TSSCSC
T ss_pred CCCcCEEECCCCcCCccChhH----CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH--hHccCC
Confidence 479999999999999887765 899999999999999766555 8889999999999999999998777 899999
Q ss_pred CCCCEEecCCCCCCchhhHh--hhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccC-CccCcccc
Q 037427 176 TNLEDLTLDYSSLHISILKS--IAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP-CLYLNQLT 252 (829)
Q Consensus 176 ~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p-~l~~~~~~ 252 (829)
++|++|+|++|.+++..|.. ++++++|++|++++|.+.+..+. ..++++++|++|++++|.+++..| .+
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~--~~~~~L~~L~~L~Ls~N~i~~~~~~~l------ 168 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH--PSFGKLNSLKSIDFSSNQIFLVCEHEL------ 168 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC--GGGGTCSSCCEEEEESSCCCCCCSGGG------
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc--hhHhhCCCCCEEECCCCcCCeeCHHHc------
Confidence 99999999999999866665 88999999999999998876543 157788888888888888775544 22
Q ss_pred cccCCCCCCCC--CCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCC
Q 037427 253 GNISSSPLIHL--TSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHAT 330 (829)
Q Consensus 253 g~i~~~~l~~l--~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~ 330 (829)
..+ ++|+.|++++|.+.+..+.. + +.
T Consensus 169 --------~~l~~~~L~~L~L~~n~l~~~~~~~-~-------------------------------------------~~ 196 (844)
T 3j0a_A 169 --------EPLQGKTLSFFSLAANSLYSRVSVD-W-------------------------------------------GK 196 (844)
T ss_dssp --------HHHHHCSSCCCEECCSBSCCCCCCC-C-------------------------------------------CS
T ss_pred --------ccccCCccceEECCCCccccccccc-h-------------------------------------------hh
Confidence 333 56666666666655432211 0 00
Q ss_pred cChhhhCCCCcCEEEcCCCCCCCCCchHHhhcC--CCCCEEEccCCc---------CcCCCCCCCCCC--CCCCEEEccC
Q 037427 331 FPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNN--PNLSTLVLRNNS---------LSGPFQTPIQPH--WHLDALHVSK 397 (829)
Q Consensus 331 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~L~~n~---------l~~~~~~~~~~l--~~L~~L~ls~ 397 (829)
.+..+.. ..|+.|++++|.+.+.+|..+...+ +.++.|.++.+. +.+.....+..+ ++|+.|++++
T Consensus 197 ~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~ 275 (844)
T 3j0a_A 197 CMNPFRN-MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275 (844)
T ss_dssp SSCTTTT-CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred cCCcccc-CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCC
Confidence 1111222 2599999999999988887754332 578889887443 333333444443 7899999999
Q ss_pred CcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECC
Q 037427 398 NFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMS 477 (829)
Q Consensus 398 n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 477 (829)
|.+.+..|..+ ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++|+++
T Consensus 276 n~l~~~~~~~~---------~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 276 GFVFSLNSRVF---------ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCCCEECSCCS---------SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred CcccccChhhh---------hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 99986544433 356899999999999999999999999999999999999998889999999999999999
Q ss_pred CCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCC
Q 037427 478 DNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLK 557 (829)
Q Consensus 478 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 557 (829)
+|.+.+..+..+..+++|++|++++|.+++. ..+++|+.|++++|+++ .+|.. ..+++.|++++|++.+.-.
T Consensus 347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~--~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI--NLTANLIHLSENRLENLDI 418 (844)
T ss_dssp SCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC--CTTCCEEECCSCCCCSSTT
T ss_pred CCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc--ccccceeecccCccccCch
Confidence 9999988888899999999999999999853 33889999999999998 44543 5679999999999976433
Q ss_pred ccccCCCCCccEEEccCCcCCCcchh-hhhcCCCCCEEEccCCccc-----ccCCcccCCCCCCCEEECcCCcCccCCCC
Q 037427 558 YGTFFNRSSIVTLDLSYNSFSGNIPY-WIERLIRLRYLILANNNLE-----GEVPNQLCGLKQLRLIDLSNNNLFGQIPG 631 (829)
Q Consensus 558 ~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 631 (829)
...+..+++|++|++++|++++..+. .+..+++|++|++++|.++ +..+..+.++++|+.|+|++|++++..|.
T Consensus 419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 498 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498 (844)
T ss_dssp HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTT
T ss_pred hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChh
Confidence 33356899999999999999875543 3556899999999999997 44556788999999999999999988887
Q ss_pred CccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccc
Q 037427 632 CLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIG 711 (829)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~ 711 (829)
.+..+. +|+.|+|++|++++..|..+.
T Consensus 499 ~~~~l~-----------------------------------------------------~L~~L~Ls~N~l~~l~~~~~~ 525 (844)
T 3j0a_A 499 VFSHLT-----------------------------------------------------ALRGLSLNSNRLTVLSHNDLP 525 (844)
T ss_dssp SSSSCC-----------------------------------------------------SCSEEEEESCCCSSCCCCCCC
T ss_pred Hccchh-----------------------------------------------------hhheeECCCCCCCccChhhhh
Confidence 776655 899999999999987777776
Q ss_pred cCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCC
Q 037427 712 KLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP 755 (829)
Q Consensus 712 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip 755 (829)
++|+.|+|++|++++.+|..|. +|+.|++++|++.+..+
T Consensus 526 --~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 526 --ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE 564 (844)
T ss_dssp --SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred --ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccc
Confidence 8999999999999999998764 78999999999987554
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.2e-53 Score=490.33 Aligned_cols=518 Identities=17% Similarity=0.205 Sum_probs=293.6
Q ss_pred CChHHHHHHHHHhhhcCCCCC--------CCCCCCCCCCCCCCCccc---cceEecCCCCcEEEEEcCCCcccccccccc
Q 037427 20 GCLEQERSALLRLKHDFFNDP--------FNLENWVDDENHSDCCKW---EGVECNTSTGRVKALYLSSKRQFLYSTAGQ 88 (829)
Q Consensus 20 ~~~~~~~~~ll~~k~~~~~~~--------~~l~~w~~~~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~ 88 (829)
+...+|+.||.++|+++.++. ...++|. .+++||.| +||+|+. .|||++|+|+++++. |.
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~---g~-- 96 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGAS---GR-- 96 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCE---EE--
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcC-CCCEEEEEecCcccC---Cc--
Confidence 344579999999999986321 1345786 46799999 9999986 489999999988752 22
Q ss_pred cCcccccCCCCCcEEeCCCCCCCCcCCCcc-------ccccCCCCCCCEEECCCCCCCccchhhhcC-CCCCCEEEcCCC
Q 037427 89 LNASLLTPFQQLETLHLDSNNIAGFVENGG-------LERLSGLSKLKLLNLGRNLFNNSIFSSLAG-LSSLRTLSLGYN 160 (829)
Q Consensus 89 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-------~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-L~~L~~L~Ls~n 160 (829)
++ ..+..+++|++|+|++|.+.......+ +. -..+++|| ++++.|.+.+.+|..+.. +..+.++++...
T Consensus 97 lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~-~~~~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~ 173 (636)
T 4eco_A 97 VP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS-DEQKQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173 (636)
T ss_dssp EC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCC-HHHHHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSC
T ss_pred CC-hHHhcCccceEEECcCCccccCCccccccccccCch-HHHHHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccc
Confidence 22 456777777777777776521110000 00 00023334 444444444444433331 112222222221
Q ss_pred cCCccCCccccccCCCCCCEEecC--CCCCCchhhHhhhcCCCCCEEEcccccCccc-----------------cCCCcc
Q 037427 161 RLKGSIDVKETLDNFTNLEDLTLD--YSSLHISILKSIAAFTSLKRLSIQNGRVDGA-----------------LGDDEE 221 (829)
Q Consensus 161 ~i~~~~p~~~~l~~l~~L~~L~Ls--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~~~ 221 (829)
.+. ......++.+.+. .|.+++ +|..++++++|++|++++|.+++. +|.
T Consensus 174 ~~~--------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~--- 241 (636)
T 4eco_A 174 SIK--------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE--- 241 (636)
T ss_dssp CCC--------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS---
T ss_pred ccc--------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch---
Confidence 111 0111122222222 355555 566666666666666666666653 444
Q ss_pred ccC--CCCCCcEEECCCccCccccC-CccCcccccccCCCCCCCCCCCCEEEccccc-Ccc-ccCchhhcCCCCCceeec
Q 037427 222 GLC--RLGHLQELHMGGNDLRGTLP-CLYLNQLTGNISSSPLIHLTSIERLFLSYNQ-FQI-PFSLEPFFNLSKLKVFSG 296 (829)
Q Consensus 222 ~l~--~l~~L~~L~L~~n~l~g~~p-~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~-~~~-~~~~~~l~~l~~L~~L~l 296 (829)
.++ ++++|++|++++|.+.|.+| .+ +++++|++|++++|+ +++ .+|.. ++++.
T Consensus 242 ~l~~~~l~~L~~L~L~~n~l~~~~p~~l--------------~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~------- 299 (636)
T 4eco_A 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFL--------------KALPEMQLINVACNRGISGEQLKDD-WQALA------- 299 (636)
T ss_dssp CCCGGGCTTCCEEEEECCTTCSSCCTTT--------------TTCSSCCEEECTTCTTSCHHHHHHH-HHHHH-------
T ss_pred hhhhcccCCCCEEEecCCcCCccChHHH--------------hcCCCCCEEECcCCCCCccccchHH-HHhhh-------
Confidence 344 44445555555444444443 22 444444444444443 333 22211 11100
Q ss_pred cccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCch--HHhhcCCCCCEEEccCC
Q 037427 297 EFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPN--WLLKNNPNLSTLVLRNN 374 (829)
Q Consensus 297 ~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~--~~~~~l~~L~~L~L~~n 374 (829)
.+..+++|++|++++|+++ .+|. . ++++++|++|++++|
T Consensus 300 -------------------------------------~~~~l~~L~~L~L~~n~l~-~ip~~~~-l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 300 -------------------------------------DAPVGEKIQIIYIGYNNLK-TFPVETS-LQKMKKLGMLECLYN 340 (636)
T ss_dssp -------------------------------------HSGGGGTCCEEECCSSCCS-SCCCHHH-HTTCTTCCEEECCSC
T ss_pred -------------------------------------ccccCCCCCEEECCCCcCC-ccCchhh-hccCCCCCEEeCcCC
Confidence 0011134444555555544 4444 2 344444444444444
Q ss_pred cCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccC-CcEEecc
Q 037427 375 SLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRK-LARLHLD 453 (829)
Q Consensus 375 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~ 453 (829)
.++|.+| .+. .+++|++|++++|.++ .+|..+..+++ |++|+++
T Consensus 341 ------------------------~l~g~ip-~~~---------~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 341 ------------------------QLEGKLP-AFG---------SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp ------------------------CCEEECC-CCE---------EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECC
T ss_pred ------------------------cCccchh-hhC---------CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEcc
Confidence 4444443 221 1345666666666665 45556666777 7777777
Q ss_pred cccCCCccCccCCCCC--CCcEEECCCCcCCCCcccccC-------CCCCCCEEEccCCcccCCChhhhhCCCCCCEEeC
Q 037427 454 ANYFTGEIPKSLSNCS--RLEGLYMSDNNLYGNIPARLG-------NLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDL 524 (829)
Q Consensus 454 ~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~p~~l~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 524 (829)
+|.++ .+|..+..++ +|++|++++|++.+.+|..+. .+++|++|++++|+++...+..+..+++|++|++
T Consensus 386 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 386 HNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464 (636)
T ss_dssp SSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEEC
T ss_pred CCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEEC
Confidence 77777 6676666544 788888888888877777776 6677888888888887544455566788888888
Q ss_pred CCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhh--cCCCCCEEEccCCccc
Q 037427 525 SENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE--RLIRLRYLILANNNLE 602 (829)
Q Consensus 525 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~ 602 (829)
++|+++ .+|..... + ... .+.++++|++|++++|+++ .+|..+. .+++|++|+|++|+++
T Consensus 465 s~N~l~-~i~~~~~~--------------~-~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~ 526 (636)
T 4eco_A 465 MGNMLT-EIPKNSLK--------------D-ENE-NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFS 526 (636)
T ss_dssp CSSCCS-BCCSSSSE--------------E-TTE-ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCS
T ss_pred CCCCCC-CcCHHHhc--------------c-ccc-cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCC
Confidence 888777 44432100 0 000 0233447777777777777 5555554 6777777777777777
Q ss_pred ccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeeccccee
Q 037427 603 GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISF 682 (829)
Q Consensus 603 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (829)
+ +|..+..+++|++|++++|+.
T Consensus 527 ~-ip~~~~~l~~L~~L~Ls~N~~--------------------------------------------------------- 548 (636)
T 4eco_A 527 K-FPTQPLNSSTLKGFGIRNQRD--------------------------------------------------------- 548 (636)
T ss_dssp S-CCCGGGGCSSCCEEECCSCBC---------------------------------------------------------
T ss_pred C-cChhhhcCCCCCEEECCCCcc---------------------------------------------------------
Confidence 5 666677777777777766541
Q ss_pred eecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCc
Q 037427 683 SYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN 751 (829)
Q Consensus 683 ~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 751 (829)
+++|++.+.+|..++.+++|++|+|++|++ +.+|..+. ++|+.|||++|++.
T Consensus 549 --------------ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 549 --------------AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp --------------TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred --------------cccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 355666667777777777777777777777 46666655 67777777777665
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.1e-50 Score=471.91 Aligned_cols=540 Identities=15% Similarity=0.168 Sum_probs=309.6
Q ss_pred CCChHHHHHHHHHhhhcCCCCCCCCCCCCCCC--CCCCC--ccc------------cceEecCCCCcEEEEEcCCCcccc
Q 037427 19 EGCLEQERSALLRLKHDFFNDPFNLENWVDDE--NHSDC--CKW------------EGVECNTSTGRVKALYLSSKRQFL 82 (829)
Q Consensus 19 ~~~~~~~~~~ll~~k~~~~~~~~~l~~w~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~~~ 82 (829)
.++..+|+.||++||+++.++ +|..+. ...+| |.| .||+|+. .+||++|+|+++++.
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~- 336 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK- 336 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE-
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC-
Confidence 456678999999999999643 896321 01244 999 9999986 689999999988652
Q ss_pred cccccccCcccccCCCCCcEEeC-CCCCCCCcCCCccccccCCCCCCCEEECCC--------------------CCCCcc
Q 037427 83 YSTAGQLNASLLTPFQQLETLHL-DSNNIAGFVENGGLERLSGLSKLKLLNLGR--------------------NLFNNS 141 (829)
Q Consensus 83 ~~~~~~~~~~~l~~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~--------------------n~l~~~ 141 (829)
|. + +..+..+++|++||| ++|.+.|..+ +..... .++++. ..+.+.
T Consensus 337 --G~--i-p~~l~~L~~L~~LdLss~N~lsG~~~------~~~~~~--~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l 403 (876)
T 4ecn_A 337 --GR--V-PDAIGQLTELKVLSFGTHSETVSGRL------FGDEEL--TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403 (876)
T ss_dssp --EE--E-CGGGGGCTTCCEEESCCTTHHHHTTC------BTTBCC--CSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred --Cc--C-chHHhccccceEeeeccccccccccc------cccccc--ccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence 21 2 234556666666666 5555555432 111100 000000 000000
Q ss_pred chhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCC--CCCCchhhHhhhcCCCCCEEEcccccCccc-cCC
Q 037427 142 IFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDY--SSLHISILKSIAAFTSLKRLSIQNGRVDGA-LGD 218 (829)
Q Consensus 142 ~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~--n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~ 218 (829)
.+..+...+. ..+ ........++.+.+.. |.+++ +|..++++++|++|+|++|.+++. +|.
T Consensus 404 ~~~~l~~~~~-------------~~~--i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~ 467 (876)
T 4ecn_A 404 LQDAINRNPE-------------MKP--IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAV 467 (876)
T ss_dssp HHHHHHTCTT-------------SCC--CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSS
T ss_pred HHHHhhhCcc-------------ccc--cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccc
Confidence 1111110000 000 0111222333333433 56666 666677777777777777777662 111
Q ss_pred CccccCCCCCCcEEECCCccCccccCCccCcccccccCCCCCC--CCCCCCEEEcccccCccccCchhhcCCCCCceeec
Q 037427 219 DEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLI--HLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSG 296 (829)
Q Consensus 219 ~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~--~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l 296 (829)
.+. ..+.|.+.|.+| ..++ ++++|++|+|++|.+.+.+| ..+.++++|+.|++
T Consensus 468 ---~~~--------~~s~n~~~g~iP-------------~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 468 ---DWE--------DANSDYAKQYEN-------------EELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNI 522 (876)
T ss_dssp ---SCS--------CTTSHHHHHHTT-------------SCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEEC
T ss_pred ---ccc--------ccccccccccCC-------------hhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEEC
Confidence 000 001122222233 1113 45555555555554443333 12222222222222
Q ss_pred cccceeeccCCCCCCCCCcCccEEEccCCCCCC-CcChhhh-------CCCCcCEEEcCCCCCCCCCch--HHhhcCCCC
Q 037427 297 EFNEIYVEPESSHSTTPKFQLESVSLSGSDIHA-TFPKFLY-------NQHDLELVDFSDSNLKGEFPN--WLLKNNPNL 366 (829)
Q Consensus 297 ~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~-~~p~~l~-------~~~~L~~L~Ls~n~l~~~~p~--~~~~~l~~L 366 (829)
++|.+ +++ .+|..+. .+++|+.|++++|.+. .+|. . ++++++|
T Consensus 523 s~N~~-------------------------lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~-l~~L~~L 575 (876)
T 4ecn_A 523 ACNRG-------------------------ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS-LQKMVKL 575 (876)
T ss_dssp TTCTT-------------------------SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH-HTTCTTC
T ss_pred cCCCC-------------------------cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh-hhcCCCC
Confidence 21110 111 1222222 2335555666666555 5555 3 4555555
Q ss_pred CEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccC
Q 037427 367 STLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRK 446 (829)
Q Consensus 367 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 446 (829)
++|++++|.++ .+| .+..+ ++|++|++++|.++ .+|..+..+++
T Consensus 576 ~~L~Ls~N~l~-~lp-~~~~L---------------------------------~~L~~L~Ls~N~l~-~lp~~l~~l~~ 619 (876)
T 4ecn_A 576 GLLDCVHNKVR-HLE-AFGTN---------------------------------VKLTDLKLDYNQIE-EIPEDFCAFTD 619 (876)
T ss_dssp CEEECTTSCCC-BCC-CCCTT---------------------------------SEESEEECCSSCCS-CCCTTSCEECT
T ss_pred CEEECCCCCcc-cch-hhcCC---------------------------------CcceEEECcCCccc-cchHHHhhccc
Confidence 55555555555 233 33333 34555555555554 44445555666
Q ss_pred -CcEEecccccCCCccCccCCCCCC--CcEEECCCCcCCCCcccc---cC--CCCCCCEEEccCCcccCCChhhhhCCCC
Q 037427 447 -LARLHLDANYFTGEIPKSLSNCSR--LEGLYMSDNNLYGNIPAR---LG--NLSSLNDIMMASNHLQGPIPLEFCQLNY 518 (829)
Q Consensus 447 -L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~p~~---l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 518 (829)
|+.|++++|.++ .+|..+..++. |+.|++++|++.+.+|.. +. .+++|+.|++++|+++...+..+..+++
T Consensus 620 ~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~ 698 (876)
T 4ecn_A 620 QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698 (876)
T ss_dssp TCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCC
T ss_pred cCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCC
Confidence 777777777766 55665655543 777777777777655432 22 3347888888888888444444457888
Q ss_pred CCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhh--cCCCCCEEEc
Q 037427 519 LEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE--RLIRLRYLIL 596 (829)
Q Consensus 519 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L 596 (829)
|+.|++++|+++ .+|..... +..+ .+.++++|+.|+|++|+++ .+|..+. .+++|+.|+|
T Consensus 699 L~~L~Ls~N~L~-~ip~~~~~--------------~~~~--~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~L 760 (876)
T 4ecn_A 699 ISTIILSNNLMT-SIPENSLK--------------PKDG--NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDV 760 (876)
T ss_dssp CSEEECCSCCCS-CCCTTSSS--------------CTTS--CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEEC
T ss_pred CCEEECCCCcCC-ccChHHhc--------------cccc--cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEe
Confidence 888888888887 44433200 0000 1344568888888888888 6677776 7888999999
Q ss_pred cCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeee
Q 037427 597 ANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFT 676 (829)
Q Consensus 597 ~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (829)
++|++++ +|..+..+++|+.|+|++|+
T Consensus 761 s~N~L~~-lp~~l~~L~~L~~L~Ls~N~---------------------------------------------------- 787 (876)
T 4ecn_A 761 SYNCFSS-FPTQPLNSSQLKAFGIRHQR---------------------------------------------------- 787 (876)
T ss_dssp CSSCCSS-CCCGGGGCTTCCEEECCCCB----------------------------------------------------
T ss_pred CCCCCCc-cchhhhcCCCCCEEECCCCC----------------------------------------------------
Confidence 9998886 78888888888888888775
Q ss_pred cccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCc
Q 037427 677 TKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPP 756 (829)
Q Consensus 677 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~ 756 (829)
++++|++.+.+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|||++|++...-+.
T Consensus 788 -------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~ 845 (876)
T 4ecn_A 788 -------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVT 845 (876)
T ss_dssp -------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECG
T ss_pred -------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChH
Confidence 2456777778888888888888888888888 57777765 5888888888888766666
Q ss_pred ccccCCCCcEEeccCCccee
Q 037427 757 QLVELNALVVFSVAHNNLSA 776 (829)
Q Consensus 757 ~l~~l~~L~~L~ls~N~l~g 776 (829)
.+.....+..+.+.+|++..
T Consensus 846 ~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 846 SVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp GGHHHHHTTCCEEECCTTSE
T ss_pred HccccccchheeecCCCccc
Confidence 66666666777777776553
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-48 Score=448.72 Aligned_cols=506 Identities=19% Similarity=0.195 Sum_probs=296.9
Q ss_pred CCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCC
Q 037427 98 QQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTN 177 (829)
Q Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~ 177 (829)
+++++|++++|.+++..+.+ |.++++|++|+|++|.+++..+..|+++++|++|+|++|.+++..| ..|+++++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL--GAFSGLSS 101 (570)
T ss_dssp SSCCEEECCSCCCCEECTTT----TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT--TTTTTCTT
T ss_pred ccccEEEccCCccCccChhH----hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH--hhhcCccc
Confidence 34566666666655544432 5555666666666665555555555555666666666555554433 44555555
Q ss_pred CCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCcc-ccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccC
Q 037427 178 LEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDG-ALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNIS 256 (829)
Q Consensus 178 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~ 256 (829)
|++|++++|.+++..+..++++++|++|++++|.+.+ .+|. .++++
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~---~~~~l------------------------------ 148 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE---YFSNL------------------------------ 148 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG---GGGGC------------------------------
T ss_pred cccccccccccccCCCccccccccccEEecCCCccceecChh---hhccc------------------------------
Confidence 5555555555554433344555555555555554443 1233 34444
Q ss_pred CCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhh
Q 037427 257 SSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLY 336 (829)
Q Consensus 257 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~ 336 (829)
++|++|++++|.+++. +...+..+++|+. ..+++++++|.+.+..|..+.
T Consensus 149 -------~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~----------------------~~~~L~l~~n~l~~~~~~~~~ 198 (570)
T 2z63_A 149 -------TNLEHLDLSSNKIQSI-YCTDLRVLHQMPL----------------------LNLSLDLSLNPMNFIQPGAFK 198 (570)
T ss_dssp -------TTCCEEECTTSCCCEE-CGGGGHHHHTCTT----------------------CCCEEECTTCCCCEECTTTTT
T ss_pred -------CCCCEEeCcCCcccee-cHHHccchhccch----------------------hhhhcccCCCCceecCHHHhc
Confidence 4444444444444321 1222333333310 002233333333333333333
Q ss_pred CCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhcccccc
Q 037427 337 NQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHL 416 (829)
Q Consensus 337 ~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~ 416 (829)
.. +|+.|++++|..........++.++.++.+.+....+... ..++ .+....+.+ +..
T Consensus 199 ~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~--------~~l~--~~~~~~~~~---------l~~-- 256 (570)
T 2z63_A 199 EI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--------GNLE--KFDKSALEG---------LCN-- 256 (570)
T ss_dssp TC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC--------SSCE--ECCTTTTGG---------GGG--
T ss_pred cC-cceeEecccccccccchhhhhcCccccceeeeccccccCc--------hhhh--hcchhhhcc---------ccc--
Confidence 33 4566666655433222222255666666655543322210 0111 111111110 110
Q ss_pred ccCCCcccEEEcccc-cccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCC
Q 037427 417 AMGCFNLEYLVLSEN-SLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSL 495 (829)
Q Consensus 417 ~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 495 (829)
..++.++++++ .+.+..+..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|
T Consensus 257 ----l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L 327 (570)
T 2z63_A 257 ----LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSL 327 (570)
T ss_dssp ----SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSC
T ss_pred ----cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--cccccc
Confidence 13556666665 555555666666666666666666666 455555555 6666666666665 3333 345555
Q ss_pred CEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCC
Q 037427 496 NDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN 575 (829)
Q Consensus 496 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n 575 (829)
++|++++|.+.+..+. ..+++|++|++++|.+++.. ..+.. +..+++|++|++++|
T Consensus 328 ~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~---------------------~~~~~-~~~~~~L~~L~l~~n 383 (570)
T 2z63_A 328 KRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKG---------------------CCSQS-DFGTTSLKYLDLSFN 383 (570)
T ss_dssp CEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEE---------------------EEEHH-HHTCSCCCEEECCSC
T ss_pred CEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccc---------------------ccccc-ccccCccCEEECCCC
Confidence 6666665555544332 34455555555555443211 01222 667778888888888
Q ss_pred cCCCcchhhhhcCCCCCEEEccCCcccccCC-cccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCC
Q 037427 576 SFSGNIPYWIERLIRLRYLILANNNLEGEVP-NQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNP 654 (829)
Q Consensus 576 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 654 (829)
++.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..|..+..+.
T Consensus 384 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------------- 445 (570)
T 2z63_A 384 GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS----------------- 445 (570)
T ss_dssp SEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-----------------
T ss_pred cccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC-----------------
Confidence 87765544 7788888888888888876655 4677888888888888888877776665544
Q ss_pred CCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCC-CCCCcccccCCCCCEEECCCCCCCCCcccc
Q 037427 655 NRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT-GEIPPQIGKLTNIRALNFSHNNLTGVIPVS 733 (829)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~ 733 (829)
+|++|++++|+++ +.+|..+..+++|++|++++|++++..|..
T Consensus 446 ------------------------------------~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~ 489 (570)
T 2z63_A 446 ------------------------------------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489 (570)
T ss_dssp ------------------------------------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ------------------------------------cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh
Confidence 7888888888887 578888888999999999999999888888
Q ss_pred ccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCC
Q 037427 734 FSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNP 781 (829)
Q Consensus 734 l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 781 (829)
|..+++|+.|++++|++++..|..+..+++|++|++++|+++|..|..
T Consensus 490 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 888999999999999998888888888899999999999998887753
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.2e-47 Score=438.58 Aligned_cols=478 Identities=18% Similarity=0.162 Sum_probs=320.7
Q ss_pred CCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEE
Q 037427 126 SKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRL 205 (829)
Q Consensus 126 ~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 205 (829)
++|++|++++|.+++..|..|+++++|++|+|++|.+++..| ..|+++++|++|+|++|.+++..+..++++++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG--DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh--hhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 567777777777776666777777777777777777776555 567777777777777777777766677777777777
Q ss_pred EcccccCccc-cCCCccccCCCCCCcEEECCCccCccccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCchh
Q 037427 206 SIQNGRVDGA-LGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEP 284 (829)
Q Consensus 206 ~L~~n~l~~~-~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 284 (829)
++++|.+.+. .|. .++++++|++|++++|.+.+.+| +..+..+++|++|++++|.++
T Consensus 104 ~Ls~n~l~~~~~~~---~~~~l~~L~~L~L~~n~~~~~~~------------~~~~~~l~~L~~L~L~~n~l~------- 161 (549)
T 2z81_A 104 NLMGNPYQTLGVTS---LFPNLTNLQTLRIGNVETFSEIR------------RIDFAGLTSLNELEIKALSLR------- 161 (549)
T ss_dssp ECTTCCCSSSCSSC---SCTTCTTCCEEEEEESSSCCEEC------------TTTTTTCCEEEEEEEEETTCC-------
T ss_pred ECCCCcccccchhh---hhhccCCccEEECCCCccccccC------------HhhhhcccccCeeeccCCccc-------
Confidence 7777777642 333 46666666666666665443333 222344555555555555444
Q ss_pred hcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCC
Q 037427 285 FFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNP 364 (829)
Q Consensus 285 l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~ 364 (829)
+..|..+..+++|+.|+++.|.+. .+|.++++.++
T Consensus 162 --------------------------------------------~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~ 196 (549)
T 2z81_A 162 --------------------------------------------NYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILS 196 (549)
T ss_dssp --------------------------------------------EECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTT
T ss_pred --------------------------------------------ccChhhhhccccCceEecccCccc-ccchhhHhhcc
Confidence 333444555666667777776665 56666566778
Q ss_pred CCCEEEccCCcCcCCC--C-CCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCcccc
Q 037427 365 NLSTLVLRNNSLSGPF--Q-TPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKK 441 (829)
Q Consensus 365 ~L~~L~L~~n~l~~~~--~-~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 441 (829)
+|++|++++|.+++.. + .....+++|+.|++++|.+++..+..+...+. .+++|+.+++++|.+.+...-
T Consensus 197 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~-----~~~~L~~l~l~~~~~~~~~~~-- 269 (549)
T 2z81_A 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR-----YILELSEVEFDDCTLNGLGDF-- 269 (549)
T ss_dssp TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGG-----GCTTCCEEEEESCEEECCSCC--
T ss_pred cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhh-----hhccccccccccccccccccc--
Confidence 8888888888777642 1 11234567777777777777655554443211 234566666666655432100
Q ss_pred ccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCC-----cccccCCCCCCCEEEccCCcccCCChhhh-hC
Q 037427 442 NYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGN-----IPARLGNLSSLNDIMMASNHLQGPIPLEF-CQ 515 (829)
Q Consensus 442 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~ 515 (829)
+ ......+..+++|+.|++.++.+... ++..+...++|++|++++|++. .+|..+ ..
T Consensus 270 ---~-------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~ 332 (549)
T 2z81_A 270 ---N-------------PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQH 332 (549)
T ss_dssp ---C-------------CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHH
T ss_pred ---c-------------ccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhc
Confidence 0 00112234556667777766655421 1111223456777777777765 344443 46
Q ss_pred CCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcch--hhhhcCCCCCE
Q 037427 516 LNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP--YWIERLIRLRY 593 (829)
Q Consensus 516 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~ 593 (829)
+++|++|++++|++++.+|.. ...+..+++|++|++++|++++..+ ..+..+++|++
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~---------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~ 391 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKN---------------------SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHH---------------------HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCE
T ss_pred CccccEEEccCCccccccccc---------------------hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCE
Confidence 777777777777666433210 1115667888888888888886543 56888999999
Q ss_pred EEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccce
Q 037427 594 LILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESI 673 (829)
Q Consensus 594 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (829)
|++++|+++ .+|..+..+++|++|++++|++++ +|..+
T Consensus 392 L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~---------------------------------------- 429 (549)
T 2z81_A 392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI---------------------------------------- 429 (549)
T ss_dssp EECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS----------------------------------------
T ss_pred EECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh----------------------------------------
Confidence 999999998 678888889999999999999863 23211
Q ss_pred eeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCccc
Q 037427 674 MFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK 753 (829)
Q Consensus 674 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ 753 (829)
.++|++||+++|++++.+ ..+++|++|+|++|+++ .+|. ...+++|++|||++|++++.
T Consensus 430 ---------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 430 ---------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSV 488 (549)
T ss_dssp ---------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCC
T ss_pred ---------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCc
Confidence 126889999999998653 57889999999999999 6676 56789999999999999998
Q ss_pred CCcccccCCCCcEEeccCCcceeecCC
Q 037427 754 IPPQLVELNALVVFSVAHNNLSAAERN 780 (829)
Q Consensus 754 ip~~l~~l~~L~~L~ls~N~l~g~ip~ 780 (829)
+|..+..+++|++|++++|+++|..|.
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 489 PDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred CHHHHhcCcccCEEEecCCCccCCCcc
Confidence 888899999999999999999988773
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-46 Score=436.60 Aligned_cols=493 Identities=18% Similarity=0.160 Sum_probs=359.2
Q ss_pred CCcEEEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhh
Q 037427 67 TGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSL 146 (829)
Q Consensus 67 ~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 146 (829)
..+++.|+|+++.+. .+.+..|..+++|++|+|++|.+++..+.. |.++++|++|+|++|.+++..|..|
T Consensus 27 ~~~l~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (570)
T 2z63_A 27 PFSTKNLDLSFNPLR------HLGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAF 96 (570)
T ss_dssp CSSCCEEECCSCCCC------EECTTTTTTCSSCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTT
T ss_pred cccccEEEccCCccC------ccChhHhhCCCCceEEECCCCcCCccCccc----ccCchhCCEEeCcCCcCCccCHhhh
Confidence 457999999998753 234557899999999999999999877654 8999999999999999998888999
Q ss_pred cCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCc-hhhHhhhcCCCCCEEEcccccCccccCCCccccCC
Q 037427 147 AGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHI-SILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCR 225 (829)
Q Consensus 147 ~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 225 (829)
+++++|++|++++|.+++..+ ..++++++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+. .++.
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~ 171 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT---DLRV 171 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTT--CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG---GGHH
T ss_pred cCccccccccccccccccCCC--ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH---Hccc
Confidence 999999999999999985533 469999999999999999987 4689999999999999999999987666 5666
Q ss_pred CCCC----cEEECCCccCccccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccce
Q 037427 226 LGHL----QELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEI 301 (829)
Q Consensus 226 l~~L----~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i 301 (829)
+++| ++|++++|.+++..| ..+... +|+.|++++|..........+..++.++...+....+
T Consensus 172 l~~L~~~~~~L~l~~n~l~~~~~-------------~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNFIQP-------------GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCEECT-------------TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred hhccchhhhhcccCCCCceecCH-------------HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccc
Confidence 6666 899999999986544 222433 7999999998654333334566777777666543322
Q ss_pred ee------ccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCC-CCCCCCchHHhhcCCCCCEEEccCC
Q 037427 302 YV------EPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDS-NLKGEFPNWLLKNNPNLSTLVLRNN 374 (829)
Q Consensus 302 ~~------~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n-~l~~~~p~~~~~~l~~L~~L~L~~n 374 (829)
.. .............+ +.++++++ .+.+.+|.. +..+++|++|++++|
T Consensus 238 ~~~~~l~~~~~~~~~~l~~l~l------------------------~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~ 292 (570)
T 2z63_A 238 RNEGNLEKFDKSALEGLCNLTI------------------------EEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSV 292 (570)
T ss_dssp CCCSSCEECCTTTTGGGGGSEE------------------------EEEEEEETTEEESCSTTT-TGGGTTCSEEEEESC
T ss_pred cCchhhhhcchhhhccccccch------------------------hhhhhhcchhhhhhchhh-hcCcCcccEEEecCc
Confidence 11 11111111111233 34444444 333333433 344555555555555
Q ss_pred cCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEeccc
Q 037427 375 SLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDA 454 (829)
Q Consensus 375 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 454 (829)
.+++ ++..+..+ +|++|++++|.+. .+|.. .+++|++|++++|.+.+..+. ..+++|++|++++
T Consensus 293 ~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~~-----------~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~ 356 (570)
T 2z63_A 293 TIER-VKDFSYNF-GWQHLELVNCKFG-QFPTL-----------KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR 356 (570)
T ss_dssp EECS-CCBCCSCC-CCSEEEEESCBCS-SCCBC-----------BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCS
T ss_pred cchh-hhhhhccC-CccEEeeccCccc-ccCcc-----------cccccCEEeCcCCcccccccc--ccCCCCCEEeCcC
Confidence 5543 33344444 5566666665554 33321 234666666666666554443 4567777777777
Q ss_pred ccCCCcc--CccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCCh-hhhhCCCCCCEEeCCCCcCcc
Q 037427 455 NYFTGEI--PKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIP-LEFCQLNYLEILDLSENNISG 531 (829)
Q Consensus 455 n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~ 531 (829)
|.+++.. +..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+
T Consensus 357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred CccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence 7776443 4556677777777777777764433 37777777777777777776555 456777778888888887777
Q ss_pred cCCCCC-CCCcccEEEccCCccc-CcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCccc
Q 037427 532 SLPSCS-SHSTIQQVHLSKNMLY-GPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQL 609 (829)
Q Consensus 532 ~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 609 (829)
..|..+ .+++|++|++++|.+. +.+|.. +..+++|++|++++|++++..|.++..+++|++|++++|++++..+..+
T Consensus 436 ~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514 (570)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cchhhhhcCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence 666665 6778888888888876 456655 8899999999999999998889999999999999999999998888889
Q ss_pred CCCCCCCEEECcCCcCccCCCC
Q 037427 610 CGLKQLRLIDLSNNNLFGQIPG 631 (829)
Q Consensus 610 ~~l~~L~~L~Ls~N~l~~~~p~ 631 (829)
.++++|+.|++++|++++..|.
T Consensus 515 ~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 515 DRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCTTCCEEECCSSCBCCCTTT
T ss_pred hcccCCcEEEecCCcccCCCcc
Confidence 9999999999999999988775
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.4e-46 Score=431.30 Aligned_cols=473 Identities=18% Similarity=0.152 Sum_probs=361.1
Q ss_pred CCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCC
Q 037427 98 QQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTN 177 (829)
Q Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~ 177 (829)
++|++|+|++|.+++..+.+ |.++++|++|++++|.+++..|.+|+++++|++|+|++|.+++..| ..++++++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGD----LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS--SWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSCCCEECSST----TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH--HHHTTCTT
T ss_pred CCccEEECcCCccCccChhh----hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH--HHhccCCC
Confidence 78999999999999887754 8999999999999999998888999999999999999999997655 66999999
Q ss_pred CCEEecCCCCCCc-hhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccC
Q 037427 178 LEDLTLDYSSLHI-SILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNIS 256 (829)
Q Consensus 178 L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~ 256 (829)
|++|++++|.+++ ..|..++++++|++|++++|.+.+.+|.. .+.++++|++|++++|.+++.+|
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~------------ 165 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI--DFAGLTSLNELEIKALSLRNYQS------------ 165 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT--TTTTCCEEEEEEEEETTCCEECT------------
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHh--hhhcccccCeeeccCCcccccCh------------
Confidence 9999999999986 35678999999999999999855555531 68899999999999999997666
Q ss_pred CCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhh
Q 037427 257 SSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLY 336 (829)
Q Consensus 257 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~ 336 (829)
..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+........ ....
T Consensus 166 -~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------------~~~~ 220 (549)
T 2z81_A 166 -QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPL-----------------------PVDE 220 (549)
T ss_dssp -TTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCC-----------------------SSCC
T ss_pred -hhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccccccc-----------------------chhh
Confidence 23388999999999999875 3343445668888888888877654321110 0112
Q ss_pred CCCCcCEEEcCCCCCCCCCchHH---hhcCCCCCEEEccCCcCcCCC------CCCCCCCCCCCEEEccCCcccccCchh
Q 037427 337 NQHDLELVDFSDSNLKGEFPNWL---LKNNPNLSTLVLRNNSLSGPF------QTPIQPHWHLDALHVSKNFFQGNIPLE 407 (829)
Q Consensus 337 ~~~~L~~L~Ls~n~l~~~~p~~~---~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~ls~n~l~~~ip~~ 407 (829)
.+++|+.|++++|.+.+..+..+ +..+++|+.+++++|.+.+.. ...+..+.+++.|++.++.+.....
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-- 298 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL-- 298 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG--
T ss_pred hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh--
Confidence 33455555555555544333221 234556666666666655421 1234556777788877776543110
Q ss_pred hhhccccccccCCCcccEEEcccccccccCcccc-ccccCCcEEecccccCCCccC---ccCCCCCCCcEEECCCCcCCC
Q 037427 408 IGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKK-NYLRKLARLHLDANYFTGEIP---KSLSNCSRLEGLYMSDNNLYG 483 (829)
Q Consensus 408 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~~ 483 (829)
+.. ++ ..+....+|++|++++|.+.. +|..+ ..+++|++|++++|++++..| ..++.+++|++|++++|++++
T Consensus 299 ~~~-l~-~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 375 (549)
T 2z81_A 299 FYD-LS-TVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375 (549)
T ss_dssp SCC-CC-HHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC
T ss_pred ccc-ch-hhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc
Confidence 000 00 001123578999999999874 45444 578999999999999987664 347788999999999999986
Q ss_pred Ccc--cccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCcccc
Q 037427 484 NIP--ARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTF 561 (829)
Q Consensus 484 ~~p--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l 561 (829)
..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|... .++|++|++++|++++.+
T Consensus 376 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~-~~~L~~L~Ls~N~l~~~~----- 447 (549)
T 2z81_A 376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI-PQTLEVLDVSNNNLDSFS----- 447 (549)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS-CTTCSEEECCSSCCSCCC-----
T ss_pred cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh-cCCceEEECCCCChhhhc-----
Confidence 432 45888999999999999998 577788889999999999999873 44333 368999999999997642
Q ss_pred CCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCC
Q 037427 562 FNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIP 630 (829)
Q Consensus 562 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 630 (829)
..+++|++|++++|+++ .+|. ...+++|++|++++|++++.+|..+..+++|+.|++++|++.+..|
T Consensus 448 ~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 46889999999999998 5665 4678999999999999998888889999999999999999987665
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.9e-47 Score=439.92 Aligned_cols=365 Identities=20% Similarity=0.248 Sum_probs=259.1
Q ss_pred CCCCCCCcChhhhCCCCcCEEEcCCCCCCCC-----------------CchHHhh--cCCCCCEEEccCCcCcCCCCCCC
Q 037427 324 GSDIHATFPKFLYNQHDLELVDFSDSNLKGE-----------------FPNWLLK--NNPNLSTLVLRNNSLSGPFQTPI 384 (829)
Q Consensus 324 ~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~-----------------~p~~~~~--~l~~L~~L~L~~n~l~~~~~~~~ 384 (829)
.|++++ +|..+.++++|++|++++|.+++. +|.. ++ ++++|++|++++|.+.+.+|..+
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHH
Confidence 355666 677777777777777777777764 5655 34 66666666666666666666666
Q ss_pred CCCCCCCEEEccCCc-ccc-cCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccC
Q 037427 385 QPHWHLDALHVSKNF-FQG-NIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIP 462 (829)
Q Consensus 385 ~~l~~L~~L~ls~n~-l~~-~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 462 (829)
..+++|++|++++|+ ++| .+|..++... .+..+++|++|++++|+++ .+|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~---------------------------~~~~l~~L~~L~L~~n~l~-~ip 321 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALA---------------------------DAPVGEKIQIIYIGYNNLK-TFP 321 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHH---------------------------HSGGGGTCCEEECCSSCCS-SCC
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhh---------------------------ccccCCCCCEEECCCCcCC-ccC
Confidence 666666666666665 665 5555544310 0011255566666666655 455
Q ss_pred c--cCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCC-CCEEeCCCCcCcccCCCCC-C
Q 037427 463 K--SLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNY-LEILDLSENNISGSLPSCS-S 538 (829)
Q Consensus 463 ~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~-~ 538 (829)
. .++++++|++|++++|+++|.+| .++.+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+ .
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~ 398 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA 398 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCT
T ss_pred chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhh
Confidence 5 55666666666666666665555 5556666666666666666 55555666666 666666666666 455544 2
Q ss_pred --CCcccEEEccCCcccCcCCccccC-------CCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcc-
Q 037427 539 --HSTIQQVHLSKNMLYGPLKYGTFF-------NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQ- 608 (829)
Q Consensus 539 --~~~L~~L~L~~n~l~~~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~- 608 (829)
+++|++|++++|.+.+.+|.. +. .+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~ 476 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNS 476 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSS
T ss_pred cccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHH
Confidence 235677777777776666554 55 6779999999999999655556677899999999999998 55544
Q ss_pred cCCC-------CCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccce
Q 037427 609 LCGL-------KQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEIS 681 (829)
Q Consensus 609 l~~l-------~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (829)
+... ++|++|++++|+++ .+|..+..
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------------------------------------- 509 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA---------------------------------------------- 509 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSCCC-BCCGGGST----------------------------------------------
T ss_pred hccccccccccCCccEEECcCCcCC-ccChhhhh----------------------------------------------
Confidence 3323 39999999999998 67765540
Q ss_pred eeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEEC------CCCCCCCCccccccccccCCeeecCCCcCcccCC
Q 037427 682 FSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNF------SHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP 755 (829)
Q Consensus 682 ~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip 755 (829)
..+++|+.|+|++|++++ +|..+..+++|++|+| ++|++.+.+|..++++++|+.|||++|++ +.+|
T Consensus 510 -----~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 510 -----TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp -----TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred -----ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 013389999999999997 8999999999999999 56889999999999999999999999999 6889
Q ss_pred cccccCCCCcEEeccCCcceeecC
Q 037427 756 PQLVELNALVVFSVAHNNLSAAER 779 (829)
Q Consensus 756 ~~l~~l~~L~~L~ls~N~l~g~ip 779 (829)
..+. ++|++|++++|++...-+
T Consensus 583 ~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 583 EKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp SCCC--TTCCEEECCSCTTCEEEC
T ss_pred HhHh--CcCCEEECcCCCCccccH
Confidence 8876 799999999999886544
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-43 Score=417.21 Aligned_cols=518 Identities=18% Similarity=0.169 Sum_probs=258.7
Q ss_pred CCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCC
Q 037427 99 QLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNL 178 (829)
Q Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L 178 (829)
.+++|||++|.|+++.+.+ |.++++|++|||++|.+++..+.+|.++++|++|+|++|++++..+ ..|.++++|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~----f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~--~~f~~L~~L 126 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL--GAFSGLSSL 126 (635)
T ss_dssp TCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG--GGGTTCTTC
T ss_pred CCCEEEeeCCCCCCCCHHH----HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH--HHhcCCCCC
Confidence 5666666666666655543 6666666666666666666556666666666666666666664332 456666666
Q ss_pred CEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccc-cCCCccccCCCCCCcEEECCCccCccccCCccCcccccccCC
Q 037427 179 EDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGA-LGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISS 257 (829)
Q Consensus 179 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~ 257 (829)
++|+|++|.+++..+..|+++++|++|++++|.+.+. .|. .++.+++|++|++++|++++..|
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~------------- 190 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSSNKIQSIYC------------- 190 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCEEECCSSCCCEECG-------------
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch---hhccchhhhhhcccCcccccccc-------------
Confidence 6666666666655555556666666666666655432 233 34455555555555555543222
Q ss_pred CCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhC
Q 037427 258 SPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYN 337 (829)
Q Consensus 258 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~ 337 (829)
..+..+.+++. ....++++.|.+....+..+ .
T Consensus 191 -------------------------~~l~~L~~l~~----------------------~~~~~~ls~n~l~~i~~~~~-~ 222 (635)
T 4g8a_A 191 -------------------------TDLRVLHQMPL----------------------LNLSLDLSLNPMNFIQPGAF-K 222 (635)
T ss_dssp -------------------------GGGHHHHTCTT----------------------CCCEEECTTCCCCEECTTTT-T
T ss_pred -------------------------ccccchhhhhh----------------------hhhhhhcccCcccccCcccc-c
Confidence 12222222211 01112222222222111111 1
Q ss_pred CCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcC------CCCCCCCCCCCCCEEEccCCcccccCchhhhhc
Q 037427 338 QHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSG------PFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVY 411 (829)
Q Consensus 338 ~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~ 411 (829)
...++.+++++|.....++...+..++.++...+..+.... .....+.....+...++..+..........
T Consensus 223 ~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~--- 299 (635)
T 4g8a_A 223 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGII--- 299 (635)
T ss_dssp TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECT---
T ss_pred chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchh---
Confidence 12234444444444333333334445555544443322211 111122222333333333222211100000
Q ss_pred cccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCC
Q 037427 412 FPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGN 491 (829)
Q Consensus 412 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 491 (829)
..+..+.+++.+++.++.+.... .+.....++.|++.+|.+.+..+. .++.|+.+++..|..... .....
T Consensus 300 ---~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~ 369 (635)
T 4g8a_A 300 ---DLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVD 369 (635)
T ss_dssp ---TTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCB
T ss_pred ---hhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--ccccc
Confidence 00112345666666666554332 233445666666666666543322 345566666666665432 22345
Q ss_pred CCCCCEEEccCCcccC--CChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccE
Q 037427 492 LSSLNDIMMASNHLQG--PIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVT 569 (829)
Q Consensus 492 l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 569 (829)
+++|+.+++++|.+.. ..+..+..+.+|+.++++.|......+....+++|+.+++..+......+...+..+++++.
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence 6666666666666542 33445556666677776666665444433355555555555555544444444555555555
Q ss_pred EEccCCcCCCcchhhhhcCCCCCEEEccCCccc-ccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCC
Q 037427 570 LDLSYNSFSGNIPYWIERLIRLRYLILANNNLE-GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSS 648 (829)
Q Consensus 570 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~ 648 (829)
+++++|.+.+..+..+..+++|++|++++|++. +..|..+..+++|
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L--------------------------------- 496 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL--------------------------------- 496 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------------------------------
T ss_pred ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc---------------------------------
Confidence 555555555544544555555555555555422 2334444444444
Q ss_pred CCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCC
Q 037427 649 APTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTG 728 (829)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 728 (829)
++|||++|++++.+|..|+++++|++|+|++|+|++
T Consensus 497 --------------------------------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~ 532 (635)
T 4g8a_A 497 --------------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532 (635)
T ss_dssp --------------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB
T ss_pred --------------------------------------------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC
Confidence 455555555555555555555556666666666655
Q ss_pred CccccccccccCCeeecCCCcCcccCCcccccC-CCCcEEeccCCccee
Q 037427 729 VIPVSFSNLNQVESLDVSHNNLNGKIPPQLVEL-NALVVFSVAHNNLSA 776 (829)
Q Consensus 729 ~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g 776 (829)
..|..|+++++|++|||++|+|++.+|+.+..+ ++|++|++++|++++
T Consensus 533 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 533 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 555555555666666666666665555555555 456666666665543
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.8e-45 Score=418.06 Aligned_cols=224 Identities=21% Similarity=0.239 Sum_probs=122.2
Q ss_pred CCcEEECCCCcCCCCccccc-----CCCCCCCEEEccCCcccCCCh-hhhhCC---CCCCEEeCCCCcCcccCCCCCCCC
Q 037427 470 RLEGLYMSDNNLYGNIPARL-----GNLSSLNDIMMASNHLQGPIP-LEFCQL---NYLEILDLSENNISGSLPSCSSHS 540 (829)
Q Consensus 470 ~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~~ 540 (829)
+|++|++++|++++.+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+... +....++
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~l~ 324 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-LCPSKIS 324 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC-CCCSSCC
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc-cchhhCC
Confidence 44444444444444444444 4555555555555555 223 333332 4566666666665421 1112444
Q ss_pred cccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCC--cchhhhhcCCCCCEEEccCCcccccCCc-ccCCCCCCCE
Q 037427 541 TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG--NIPYWIERLIRLRYLILANNNLEGEVPN-QLCGLKQLRL 617 (829)
Q Consensus 541 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~ 617 (829)
+|++|++++|++.+.+|.. +..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|. .+..+++|++
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred cccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 5555555555555544444 5666677777777777765 4455666677777777777777653443 3566666666
Q ss_pred EECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEc
Q 037427 618 IDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDL 697 (829)
Q Consensus 618 L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 697 (829)
|++++|++++.+|..+. ++|+.|++
T Consensus 404 L~Ls~N~l~~~~~~~l~-------------------------------------------------------~~L~~L~L 428 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLP-------------------------------------------------------PRIKVLDL 428 (520)
T ss_dssp EECCSSCCCGGGGGSCC-------------------------------------------------------TTCCEEEC
T ss_pred EECcCCCCCcchhhhhc-------------------------------------------------------ccCCEEEC
Confidence 66666666554443221 14555666
Q ss_pred CCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCccc
Q 037427 698 SCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK 753 (829)
Q Consensus 698 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ 753 (829)
++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++++.
T Consensus 429 s~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 429 HSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 666665 5555555666666666666666632222255555666666666665543
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.9e-44 Score=418.78 Aligned_cols=536 Identities=20% Similarity=0.195 Sum_probs=353.5
Q ss_pred cEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCE
Q 037427 101 ETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLED 180 (829)
Q Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~ 180 (829)
++.+-++-+++.++.. + -+++++|||++|.+++..+.+|.++++|++|||++|.|++..| .+|.++++|++
T Consensus 34 ~~~~c~~~~l~~vP~~-----l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~--~~f~~L~~L~~ 104 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDN-----L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--GAYQSLSHLST 104 (635)
T ss_dssp TEEECTTSCCSSCCSS-----S--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT--TTTTTCTTCCE
T ss_pred CEEECCCCCcCccCCC-----C--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcCh--hHhcCCCCCCE
Confidence 3456666666654322 2 1478899999999987777888999999999999998886544 67888888888
Q ss_pred EecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccc-cCCccCcccccccCCCC
Q 037427 181 LTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGT-LPCLYLNQLTGNISSSP 259 (829)
Q Consensus 181 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~-~p~l~~~~~~g~i~~~~ 259 (829)
|+|++|++++..+..|+++++|++|++++|++++..+. .++++++|++|++++|.+++. +| ..
T Consensus 105 L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~---~~~~L~~L~~L~Ls~N~l~~~~~~-------------~~ 168 (635)
T 4g8a_A 105 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQSFKLP-------------EY 168 (635)
T ss_dssp EECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTC---CCTTCTTCCEEECCSSCCCCCCCC-------------GG
T ss_pred EEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChh---hhhcCcccCeeccccCccccCCCc-------------hh
Confidence 88888888877777778888888888888777765444 466666677777766665421 11 11
Q ss_pred CCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCC
Q 037427 260 LIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQH 339 (829)
Q Consensus 260 l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~ 339 (829)
+..+++|++|++++|+++ +..+..+..+.
T Consensus 169 ~~~l~~L~~L~L~~N~l~---------------------------------------------------~~~~~~l~~L~ 197 (635)
T 4g8a_A 169 FSNLTNLEHLDLSSNKIQ---------------------------------------------------SIYCTDLRVLH 197 (635)
T ss_dssp GGGCTTCCEEECCSSCCC---------------------------------------------------EECGGGGHHHH
T ss_pred hccchhhhhhcccCcccc---------------------------------------------------ccccccccchh
Confidence 133333344333333322 22222232222
Q ss_pred ----CcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccc
Q 037427 340 ----DLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSH 415 (829)
Q Consensus 340 ----~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~ 415 (829)
....++++.|.+. .++...+ ....++.+++.+| .....++....
T Consensus 198 ~l~~~~~~~~ls~n~l~-~i~~~~~-~~~~~~~l~l~~n------------------------~~~~~~~~~~~------ 245 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLHKLTLRNN------------------------FDSLNVMKTCI------ 245 (635)
T ss_dssp TCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESC------------------------CSSHHHHHHHH------
T ss_pred hhhhhhhhhhcccCccc-ccCcccc-cchhhhhhhhhcc------------------------cccccccchhh------
Confidence 2335666666665 2332212 2223444444444 32222111111
Q ss_pred cccCCCcccEEEccccc------ccccCccccccccCCcEEecccccCCC---ccCccCCCCCCCcEEECCCCcCCCCcc
Q 037427 416 LAMGCFNLEYLVLSENS------LHGQLFSKKNYLRKLARLHLDANYFTG---EIPKSLSNCSRLEGLYMSDNNLYGNIP 486 (829)
Q Consensus 416 ~~~~~~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~p 486 (829)
.++..++...+..+. +.......+..+..+....+..+.... ..+..+..+.+++.+++.++.+...
T Consensus 246 --~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-- 321 (635)
T 4g8a_A 246 --QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-- 321 (635)
T ss_dssp --HTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--
T ss_pred --cCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--
Confidence 112233333322211 111222233344444444444433221 2223445566777777777766533
Q ss_pred cccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccC--cCCccccCCC
Q 037427 487 ARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYG--PLKYGTFFNR 564 (829)
Q Consensus 487 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~l~~l 564 (829)
..+.....|+.|++.+|.+.+..+ ..+..|+.+++..|.+.. .+....+++|+.+++++|.+.. ..+.. +..+
T Consensus 322 ~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~~ 396 (635)
T 4g8a_A 322 KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQS-DFGT 396 (635)
T ss_dssp GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHH-HHSC
T ss_pred cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCC-Ccccccccccccchhhccccccccccccc-hhhh
Confidence 234556677777777777765433 245667777777777653 3334467778888888877643 23333 5677
Q ss_pred CCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCC-cccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCC
Q 037427 565 SSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVP-NQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGD 643 (829)
Q Consensus 565 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 643 (829)
.+|+.+++..+.+.. .+..+..+++|+.+++++|+.....+ ..+..+++++.+++++|.+.+..|..+....
T Consensus 397 ~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~------ 469 (635)
T 4g8a_A 397 ISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS------ 469 (635)
T ss_dssp SCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT------
T ss_pred hhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccch------
Confidence 889999999988764 45567788999999999887765544 5678899999999999999887776655443
Q ss_pred CCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcC-CCCCCcccccCCCCCEEECC
Q 037427 644 NVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKL-TGEIPPQIGKLTNIRALNFS 722 (829)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~ip~~l~~l~~L~~L~Ls 722 (829)
.++.|++++|++ .+.+|..|..+++|++|+|+
T Consensus 470 -----------------------------------------------~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 470 -----------------------------------------------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502 (635)
T ss_dssp -----------------------------------------------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred -----------------------------------------------hhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence 788999999975 45688899999999999999
Q ss_pred CCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCCCCCCCCCcCCCCCCccccccc
Q 037427 723 HNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNPGPYCLKTWPCNGDYQCRIDCS 802 (829)
Q Consensus 723 ~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 802 (829)
+|++++.+|..|+++++|++|+|++|+|++..|..|..+++|++|++++|+|++.+|..-.. .+
T Consensus 503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~----l~------------ 566 (635)
T 4g8a_A 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH----FP------------ 566 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC----CC------------
T ss_pred CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh----hh------------
Confidence 99999999999999999999999999999999999999999999999999999998864211 00
Q ss_pred cCCCCCCcccchhhhcCCccccccccC
Q 037427 803 TMYNGEGHCKYVTAIYAPHTCICKYKC 829 (829)
Q Consensus 803 ~~~~~~~~~~~~~~~~~p~~C~c~~~~ 829 (829)
.+...++...|||+|||+++|
T Consensus 567 ------~~L~~L~L~~Np~~C~C~~~~ 587 (635)
T 4g8a_A 567 ------SSLAFLNLTQNDFACTCEHQS 587 (635)
T ss_dssp ------TTCCEEECTTCCBCCSGGGHH
T ss_pred ------CcCCEEEeeCCCCcccCCcHH
Confidence 123458899999999999875
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.4e-45 Score=430.34 Aligned_cols=375 Identities=19% Similarity=0.234 Sum_probs=253.7
Q ss_pred CCCCCCcChhhhCCCCcCEEEcCCCCCCCC-CchHHhhcCCCCCEEEccCCcCcCCCCCCCC--CCCCCCEEEccCCccc
Q 037427 325 SDIHATFPKFLYNQHDLELVDFSDSNLKGE-FPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQ--PHWHLDALHVSKNFFQ 401 (829)
Q Consensus 325 ~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~ls~n~l~ 401 (829)
|.+++ +|..+.++++|++|+|++|++++. +|... .+ .+.|.+.+.+|..+. .+++|++|++++|.+.
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~---~~------~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~ 504 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW---ED------ANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC---SC------TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc---cc------cccccccccCChhhhhccCCCCCEEECcCCCCC
Confidence 44544 555566666666666666666541 00000 00 000111112444444 5555555555555555
Q ss_pred ccCchhhhhccccccccCCCcccEEEccccc-ccc-cCcccccccc-------CCcEEecccccCCCccCc--cCCCCCC
Q 037427 402 GNIPLEIGVYFPSHLAMGCFNLEYLVLSENS-LHG-QLFSKKNYLR-------KLARLHLDANYFTGEIPK--SLSNCSR 470 (829)
Q Consensus 402 ~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~ 470 (829)
+.+|..+.. +++|++|++++|+ +++ .+|..+..++ +|+.|++++|.++ .+|. .+.++++
T Consensus 505 ~~iP~~l~~---------L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 505 TQLPDFLYD---------LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp CSCCGGGGG---------CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred ccChHHHhC---------CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 555544432 3455555555555 554 4444444443 6777777777776 5666 6667777
Q ss_pred CcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCC-CCEEeCCCCcCcccCCCCC-CC--CcccEEE
Q 037427 471 LEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNY-LEILDLSENNISGSLPSCS-SH--STIQQVH 546 (829)
Q Consensus 471 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~-~~--~~L~~L~ 546 (829)
|++|++++|+++ .+| .++.+++|+.|++++|++. .+|..+..+++ |+.|++++|.++ .+|..+ .. ++|+.|+
T Consensus 575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence 777777777776 556 6667777777777777776 56666777776 777777777776 555554 22 3477777
Q ss_pred ccCCcccCcCCccc--cC--CCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCC--------CCC
Q 037427 547 LSKNMLYGPLKYGT--FF--NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCG--------LKQ 614 (829)
Q Consensus 547 L~~n~l~~~~~~~~--l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~--------l~~ 614 (829)
+++|++.+.+|... +. .+++|+.|++++|+++...+..+..+++|+.|+|++|+++ .+|..+.. +++
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGG
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCC
Confidence 77777766554310 11 4458999999999999544444568899999999999998 56654433 238
Q ss_pred CCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcce
Q 037427 615 LRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYG 694 (829)
Q Consensus 615 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 694 (829)
|+.|+|++|+++ .+|..+.. ..+++|+.
T Consensus 730 L~~L~Ls~N~L~-~lp~~l~~---------------------------------------------------~~l~~L~~ 757 (876)
T 4ecn_A 730 LTTIDLRFNKLT-SLSDDFRA---------------------------------------------------TTLPYLSN 757 (876)
T ss_dssp CCEEECCSSCCC-CCCGGGST---------------------------------------------------TTCTTCCE
T ss_pred ccEEECCCCCCc-cchHHhhh---------------------------------------------------ccCCCcCE
Confidence 999999999998 66765540 01338999
Q ss_pred EEcCCCcCCCCCCcccccCCCCCEEECCC------CCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEe
Q 037427 695 VDLSCNKLTGEIPPQIGKLTNIRALNFSH------NNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFS 768 (829)
Q Consensus 695 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 768 (829)
|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..|.++++|+.|+|++|++ +.+|..+. ++|+.|+
T Consensus 758 L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~Ld 833 (876)
T 4ecn_A 758 MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILD 833 (876)
T ss_dssp EECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEE
T ss_pred EEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEE
Confidence 9999999997 899999999999999976 889999999999999999999999999 78998876 6999999
Q ss_pred ccCCcceeecCC
Q 037427 769 VAHNNLSAAERN 780 (829)
Q Consensus 769 ls~N~l~g~ip~ 780 (829)
|++|++....+.
T Consensus 834 Ls~N~l~~i~~~ 845 (876)
T 4ecn_A 834 IADNPNISIDVT 845 (876)
T ss_dssp CCSCTTCEEECG
T ss_pred CCCCCCCccChH
Confidence 999999876553
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8e-44 Score=407.07 Aligned_cols=463 Identities=19% Similarity=0.194 Sum_probs=304.0
Q ss_pred EEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCC
Q 037427 71 KALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLS 150 (829)
Q Consensus 71 ~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~ 150 (829)
+.+|++++++. .++.... ++|++|++++|.+++..+.. |.++++|++|+|++|.+++..|..|++++
T Consensus 3 ~~l~ls~n~l~------~ip~~~~---~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 69 (520)
T 2z7x_B 3 FLVDRSKNGLI------HVPKDLS---QKTTILNISQNYISELWTSD----ILSLSKLRILIISHNRIQYLDISVFKFNQ 69 (520)
T ss_dssp CEEECTTSCCS------SCCCSCC---TTCSEEECCSSCCCCCCHHH----HTTCTTCCEEECCSSCCCEEEGGGGTTCT
T ss_pred ceEecCCCCcc------ccccccc---ccccEEECCCCcccccChhh----ccccccccEEecCCCccCCcChHHhhccc
Confidence 35788877652 1332222 78999999999988776543 78889999999999999888888899999
Q ss_pred CCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCc-hhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCC
Q 037427 151 SLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHI-SILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHL 229 (829)
Q Consensus 151 ~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L 229 (829)
+|++|+|++|.++ .+| .. .+++|++|+|++|.+++ .+|..++++++|++|++++|.+.+. .+..+++|
T Consensus 70 ~L~~L~Ls~N~l~-~lp--~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~------~~~~l~~L 138 (520)
T 2z7x_B 70 ELEYLDLSHNKLV-KIS--CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS------SVLPIAHL 138 (520)
T ss_dssp TCCEEECCSSCCC-EEE--CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG------GGGGGTTS
T ss_pred CCCEEecCCCcee-ecC--cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh------hccccccc
Confidence 9999999999888 455 23 78899999999999887 4678889999999999999888763 45566677
Q ss_pred --cEEECCCccC--ccccC-CccCcccccccCCCCCCCCC-CCCEEEcccccCccccCchhhcCCCCCceeeccccceee
Q 037427 230 --QELHMGGNDL--RGTLP-CLYLNQLTGNISSSPLIHLT-SIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYV 303 (829)
Q Consensus 230 --~~L~L~~n~l--~g~~p-~l~~~~~~g~i~~~~l~~l~-~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~ 303 (829)
++|++++|.+ .+..| .+ ..+. +...+++++|.+.+.++...+.++++|+.++++.|....
T Consensus 139 ~L~~L~l~~n~l~~~~~~~~~l--------------~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 204 (520)
T 2z7x_B 139 NISKVLLVLGETYGEKEDPEGL--------------QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204 (520)
T ss_dssp CEEEEEEEECTTTTSSCCTTTT--------------TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT
T ss_pred eeeEEEeecccccccccccccc--------------cccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccc
Confidence 8999988888 55555 22 3332 233567777777766666566667766666666553100
Q ss_pred ccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhh--cCCCCCEEEccCCcCcCCCC
Q 037427 304 EPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLK--NNPNLSTLVLRNNSLSGPFQ 381 (829)
Q Consensus 304 ~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~--~l~~L~~L~L~~n~l~~~~~ 381 (829)
.. ..+.+.+| .+..+++|+.|++++|.+.+..+..+.. ..++|++|++++|.+++.+|
T Consensus 205 ~~-------------------~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 264 (520)
T 2z7x_B 205 KC-------------------SYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD 264 (520)
T ss_dssp TT-------------------HHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCC
T ss_pred cc-------------------ceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccc
Confidence 00 00223333 5667777888888877776543322211 24577777777777776666
Q ss_pred CCC-----CCCCCCCEEEccCCcccccCc-hhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccc
Q 037427 382 TPI-----QPHWHLDALHVSKNFFQGNIP-LEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDAN 455 (829)
Q Consensus 382 ~~~-----~~l~~L~~L~ls~n~l~~~ip-~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 455 (829)
..+ ..+++|+.++++.|.+ .+| ..+...++ -.+|+.|++++|
T Consensus 265 ~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~------------------------------~~~L~~L~l~~n 312 (520)
T 2z7x_B 265 FRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFS------------------------------NMNIKNFTVSGT 312 (520)
T ss_dssp CCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHH------------------------------TCCCSEEEEESS
T ss_pred cchhhcccccCceeEeccccccce--ecchhhhhcccc------------------------------cCceeEEEcCCC
Confidence 665 5555555666655555 333 22221111 033444444444
Q ss_pred cCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccC--CChhhhhCCCCCCEEeCCCCcCcccC
Q 037427 456 YFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQG--PIPLEFCQLNYLEILDLSENNISGSL 533 (829)
Q Consensus 456 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~ 533 (829)
.+.+.. .+..+++|++|++++|++++.+|..++.+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+
T Consensus 313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 313 RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred cccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence 443211 11345555555555555555555555555566666666665554 33455566666666666666666534
Q ss_pred CCC-C-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCc-ccC
Q 037427 534 PSC-S-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPN-QLC 610 (829)
Q Consensus 534 ~~~-~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~ 610 (829)
|.. + .+++|++|++++|++++.++.. +. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|. .+.
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 465 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRC-LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFD 465 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGS-CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred ccchhccCccCCEEECcCCCCCcchhhh-hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhc
Confidence 432 2 5566666666666665555543 32 68899999999998 67777778999999999999998 4555 488
Q ss_pred CCCCCCEEECcCCcCccCCC
Q 037427 611 GLKQLRLIDLSNNNLFGQIP 630 (829)
Q Consensus 611 ~l~~L~~L~Ls~N~l~~~~p 630 (829)
.+++|++|++++|++++..+
T Consensus 466 ~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCTTCCEEECCSSCBCCCHH
T ss_pred cCCcccEEECcCCCCcccCC
Confidence 89999999999999986543
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.3e-42 Score=393.59 Aligned_cols=128 Identities=21% Similarity=0.237 Sum_probs=70.6
Q ss_pred CCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCC
Q 037427 98 QQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTN 177 (829)
Q Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~ 177 (829)
...+++|+++|++++... . +. ++|++|++++|.+++..|..|.++++|++|+|++|.+++..| ..|.++++
T Consensus 31 ~~~~~l~ls~~~L~~ip~-~----~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~ 101 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPK-D----LP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF--HVFLFNQD 101 (562)
T ss_dssp --CCEEECTTSCCCSCCT-T----SC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT--TTTTTCTT
T ss_pred CCCcEEEcCCCCCccCCC-C----CC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH--HHhCCCCC
Confidence 334667777777665332 1 21 566666666666666656666666666666666666665544 45666666
Q ss_pred CCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccc-cCCCccccCCCCCCcEEECCCccCc
Q 037427 178 LEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGA-LGDDEEGLCRLGHLQELHMGGNDLR 240 (829)
Q Consensus 178 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~l~~L~~L~L~~n~l~ 240 (829)
|++|+|++|.++. +|.. .+++|++|++++|++.+. +|. .++++++|++|++++|.++
T Consensus 102 L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~---~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 102 LEYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCK---EFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CCEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCG---GGGGCTTCCEEEEECSBCC
T ss_pred CCEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchH---hhcccCcccEEecCCCccc
Confidence 6666666666552 2322 455555555555555432 222 3444455555555544443
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.6e-41 Score=387.37 Aligned_cols=459 Identities=20% Similarity=0.205 Sum_probs=303.5
Q ss_pred EEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCC
Q 037427 71 KALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLS 150 (829)
Q Consensus 71 ~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~ 150 (829)
+.++++++++.. ++... .++|++|++++|.+++..+.+ |.++++|++|+|++|.+++..|.+|++++
T Consensus 34 ~~l~ls~~~L~~------ip~~~---~~~L~~L~Ls~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 100 (562)
T 3a79_B 34 SMVDYSNRNLTH------VPKDL---PPRTKALSLSQNSISELRMPD----ISFLSELRVLRLSHNRIRSLDFHVFLFNQ 100 (562)
T ss_dssp CEEECTTSCCCS------CCTTS---CTTCCEEECCSSCCCCCCGGG----TTTCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred cEEEcCCCCCcc------CCCCC---CCCcCEEECCCCCccccChhh----hccCCCccEEECCCCCCCcCCHHHhCCCC
Confidence 678998886531 33222 289999999999999887654 89999999999999999998899999999
Q ss_pred CCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCch-hhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCC
Q 037427 151 SLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHIS-ILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHL 229 (829)
Q Consensus 151 ~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L 229 (829)
+|++|+|++|.++ .+| .. .+++|++|++++|.+++. .|..++++++|++|++++|.+.+. .+..+++|
T Consensus 101 ~L~~L~Ls~N~l~-~lp--~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~------~~~~l~~L 169 (562)
T 3a79_B 101 DLEYLDVSHNRLQ-NIS--CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL------DLLPVAHL 169 (562)
T ss_dssp TCCEEECTTSCCC-EEC--SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT------TTGGGTTS
T ss_pred CCCEEECCCCcCC-ccC--cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC------chhhhhhc
Confidence 9999999999998 566 33 899999999999999974 468999999999999999998763 34444555
Q ss_pred --cEEECCCccC--ccccC-CccCcccccccCCCCCCCCC-CCCEEEcccccCccccCchhhcCCCCCceeeccccceee
Q 037427 230 --QELHMGGNDL--RGTLP-CLYLNQLTGNISSSPLIHLT-SIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYV 303 (829)
Q Consensus 230 --~~L~L~~n~l--~g~~p-~l~~~~~~g~i~~~~l~~l~-~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~ 303 (829)
++|++++|.+ ++..| .+ ..+. ..-.+++++|.+.+.++...+..+++|+.++++.|....
T Consensus 170 ~L~~L~L~~n~l~~~~~~~~~l--------------~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 235 (562)
T 3a79_B 170 HLSCILLDLVSYHIKGGETESL--------------QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235 (562)
T ss_dssp CEEEEEEEESSCCCCSSSCCEE--------------EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH
T ss_pred eeeEEEeecccccccccCcccc--------------cccCcceEEEEecCccchhhhhhhcccccceEEEeccccccccc
Confidence 9999999998 66555 22 3322 112567788877765555555556666665555543100
Q ss_pred ccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCC----CchHHhhcCCCCCEEEccCCcCcCC
Q 037427 304 EPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGE----FPNWLLKNNPNLSTLVLRNNSLSGP 379 (829)
Q Consensus 304 ~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~ 379 (829)
. .+ ...+..+..+++|+.++++++.+.+. ++.. ...++|++|++++|.+++.
T Consensus 236 ~---------------------~l-~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~ 291 (562)
T 3a79_B 236 Q---------------------RL-MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF--FWPRPVEYLNIYNLTITER 291 (562)
T ss_dssp H---------------------HH-HHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH--HTTSSEEEEEEEEEEECSC
T ss_pred c---------------------hH-HHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh--hhcccccEEEEeccEeecc
Confidence 0 00 01123455666677777766665532 1222 1234667777777666665
Q ss_pred CCCCC-----CCCCCCCEEEccCCcccccCch-hhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecc
Q 037427 380 FQTPI-----QPHWHLDALHVSKNFFQGNIPL-EIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLD 453 (829)
Q Consensus 380 ~~~~~-----~~l~~L~~L~ls~n~l~~~ip~-~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 453 (829)
+|..+ ..++.|+.+++..+.+ .+|. .+...+ ...+|++|+++
T Consensus 292 ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~------------------------------~~~~L~~L~l~ 339 (562)
T 3a79_B 292 IDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVF------------------------------AEMNIKMLSIS 339 (562)
T ss_dssp CCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHH------------------------------HTCCCSEEEEE
T ss_pred ccchhhhcccccchheehhhccccee--ecChhhhhhhh------------------------------ccCcceEEEcc
Confidence 55544 3333333444444433 2231 111100 11345555555
Q ss_pred cccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCC--ChhhhhCCCCCCEEeCCCCcCcc
Q 037427 454 ANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGP--IPLEFCQLNYLEILDLSENNISG 531 (829)
Q Consensus 454 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~ 531 (829)
+|.+.... ....+++|++|++++|++++..|..++++++|++|++++|++++. +|..+..+++|++|++++|++++
T Consensus 340 ~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 340 DTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred CCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 55543211 114555666666666666655666666666666666666666642 23456666667777777776665
Q ss_pred cCCCC-C-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcc-
Q 037427 532 SLPSC-S-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQ- 608 (829)
Q Consensus 532 ~~~~~-~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~- 608 (829)
.+|.. + .+++|++|++++|++++.++.. +. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~ 492 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRC-LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGV 492 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGGSS-CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTS
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchhhh-hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHH
Confidence 44432 2 5667777777777776555443 22 68888888888888 56666668889999999999988 45554
Q ss_pred cCCCCCCCEEECcCCcCccCCC
Q 037427 609 LCGLKQLRLIDLSNNNLFGQIP 630 (829)
Q Consensus 609 l~~l~~L~~L~Ls~N~l~~~~p 630 (829)
+..+++|+.|++++|++.+..|
T Consensus 493 ~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 493 FDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTTCTTCCCEECCSCCBCCCHH
T ss_pred HhcCCCCCEEEecCCCcCCCcc
Confidence 8888999999999998876544
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-39 Score=365.63 Aligned_cols=372 Identities=18% Similarity=0.151 Sum_probs=273.3
Q ss_pred EEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCc
Q 037427 343 LVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFN 422 (829)
Q Consensus 343 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~ 422 (829)
.++.+++.++ .+|. -.++|++|++++|.+++..+..+..+++|++|++++|.+.+.++.. .+.++++
T Consensus 14 ~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~--------~~~~l~~ 80 (455)
T 3v47_A 14 NAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN--------TFRGLSS 80 (455)
T ss_dssp EEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT--------TTTTCTT
T ss_pred ccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc--------ccccccc
Confidence 3445555554 4553 1255666666666666655666666666666666666665444322 1223566
Q ss_pred ccEEEcccccccccCccccccccCCcEEecccccCCCccCcc--CCCCCCCcEEECCCCcCCCCcccc-cCCCCCCCEEE
Q 037427 423 LEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKS--LSNCSRLEGLYMSDNNLYGNIPAR-LGNLSSLNDIM 499 (829)
Q Consensus 423 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~ 499 (829)
|++|++++|.+++..|..+..+++|++|++++|.+++..+.. +..+++|++|++++|++++..|.. +.++++|++|+
T Consensus 81 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence 777777777777666667777777777777777776644433 677777777777777777665654 67777777777
Q ss_pred ccCCcccCCChhhhhCC--CCCCEEeCCCCcCcccCCCC---------CCCCcccEEEccCCcccCcCCccccC---CCC
Q 037427 500 MASNHLQGPIPLEFCQL--NYLEILDLSENNISGSLPSC---------SSHSTIQQVHLSKNMLYGPLKYGTFF---NRS 565 (829)
Q Consensus 500 l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~---------~~~~~L~~L~L~~n~l~~~~~~~~l~---~l~ 565 (829)
+++|++.+..+..+..+ .+|+.|++++|.+.+..+.. +.+++|++|++++|++.+..+.. +. ..+
T Consensus 161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~ 239 (455)
T 3v47_A 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGT 239 (455)
T ss_dssp CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTC
T ss_pred CCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh-hhcccccc
Confidence 77777777766666654 56777777777776543322 24467777777777776655543 32 236
Q ss_pred CccEEEccCCcCCCc----------chhhhhc--CCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCc
Q 037427 566 SIVTLDLSYNSFSGN----------IPYWIER--LIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCL 633 (829)
Q Consensus 566 ~L~~L~Ls~n~l~~~----------~~~~l~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 633 (829)
+|+.|++++|.+.+. .+..+.. .++|++|++++|++++..|..+..+++|++|++++|++++..|..+
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 319 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF 319 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh
Confidence 777788777754432 2222332 3689999999999999999999999999999999999998878777
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccC
Q 037427 634 DNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKL 713 (829)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l 713 (829)
..+. +|++|++++|++++..|..++.+
T Consensus 320 ~~l~-----------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l 346 (455)
T 3v47_A 320 WGLT-----------------------------------------------------HLLKLNLSQNFLGSIDSRMFENL 346 (455)
T ss_dssp TTCT-----------------------------------------------------TCCEEECCSSCCCEECGGGGTTC
T ss_pred cCcc-----------------------------------------------------cCCEEECCCCccCCcChhHhcCc
Confidence 6554 89999999999998889999999
Q ss_pred CCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCC
Q 037427 714 TNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNP 781 (829)
Q Consensus 714 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 781 (829)
++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|++++.+|.-
T Consensus 347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 99999999999999999999999999999999999999877778899999999999999999998853
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.2e-39 Score=362.66 Aligned_cols=367 Identities=20% Similarity=0.180 Sum_probs=306.7
Q ss_pred cCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEE
Q 037427 315 FQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALH 394 (829)
Q Consensus 315 ~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 394 (829)
.++++|+|++|.+.+..|..+..+++|++|++++|.+.+.++...+.++++|++|++++|.+++..+..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 47888999999998888889999999999999999998778766688999999999999999988888999999999999
Q ss_pred ccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccc-cccccCCcEEecccccCCCccCccCCCC--CCC
Q 037427 395 VSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSK-KNYLRKLARLHLDANYFTGEIPKSLSNC--SRL 471 (829)
Q Consensus 395 ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L 471 (829)
+++|.+++.+|.. ..+..+++|++|++++|.+++..|.. +..+++|++|++++|.+++..+..+..+ .+|
T Consensus 110 L~~n~l~~~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 110 LTQCNLDGAVLSG-------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp CTTSCCBTHHHHS-------STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred CCCCCCCccccCc-------ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 9999998755433 12234679999999999999887765 7889999999999999998888877766 688
Q ss_pred cEEECCCCcCCCCcccc--------cCCCCCCCEEEccCCcccCCChhhhhCC---CCCCEEeCCCCcCcccCCCCCCCC
Q 037427 472 EGLYMSDNNLYGNIPAR--------LGNLSSLNDIMMASNHLQGPIPLEFCQL---NYLEILDLSENNISGSLPSCSSHS 540 (829)
Q Consensus 472 ~~L~L~~n~l~~~~p~~--------l~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~~ 540 (829)
+.|++++|.+.+..+.. +..+++|++|++++|++.+..|..+... ++|+.|++++|...+........+
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 99999999988655443 2356789999999999888877777654 788888888887664322211111
Q ss_pred cccEEEccCCcccCcCCccccC--CCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEE
Q 037427 541 TIQQVHLSKNMLYGPLKYGTFF--NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLI 618 (829)
Q Consensus 541 ~L~~L~L~~n~l~~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 618 (829)
+..+.. +. ..++|++|++++|++.+..|.++..+++|++|++++|++++..|..+.++++|++|
T Consensus 263 -------------~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 328 (455)
T 3v47_A 263 -------------DPDNFT-FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328 (455)
T ss_dssp -------------CCCTTT-TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred -------------cCcccc-cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEE
Confidence 111111 22 24689999999999999999999999999999999999998889999999999999
Q ss_pred ECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcC
Q 037427 619 DLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLS 698 (829)
Q Consensus 619 ~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 698 (829)
++++|++++..|..++.+. +|++|+|+
T Consensus 329 ~Ls~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls 355 (455)
T 3v47_A 329 NLSQNFLGSIDSRMFENLD-----------------------------------------------------KLEVLDLS 355 (455)
T ss_dssp ECCSSCCCEECGGGGTTCT-----------------------------------------------------TCCEEECC
T ss_pred ECCCCccCCcChhHhcCcc-----------------------------------------------------cCCEEECC
Confidence 9999999877776666544 89999999
Q ss_pred CCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCC
Q 037427 699 CNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP 755 (829)
Q Consensus 699 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip 755 (829)
+|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++++.+|
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999999999999999999998888888999999999999999999887
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.2e-39 Score=357.48 Aligned_cols=320 Identities=22% Similarity=0.246 Sum_probs=133.3
Q ss_pred CCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccC-CccCcccccccCCCCCCCCCCCCEEEcccccCc
Q 037427 199 FTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP-CLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQ 277 (829)
Q Consensus 199 l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p-~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~ 277 (829)
.+.|++|++++|.+ +.+|. +++++++|++|++++|.+.|.+| .+ +++++|+.+++..|..
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~---~i~~L~~L~~L~l~~n~~~~~~p~~~--------------~~l~~L~~l~l~~c~~- 70 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPV---EAENVKSKTEYYNAWSEWERNAPPGN--------------GEQREMAVSRLRDCLD- 70 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTS--------------CCCHHHHHHHHHHHHH-
T ss_pred cccchhhhcccCch-hhCCh---hHhcccchhhhhccCCcccccCCccc--------------ccchhcchhhhhhhhc-
Confidence 46677777777777 56666 66777777777777777766665 33 4444443333333310
Q ss_pred cccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCch
Q 037427 278 IPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPN 357 (829)
Q Consensus 278 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 357 (829)
.+++.+++++|.+...+.. ..+|++|++++|.+.+ +|.. .++|++|++++|++. .+|.
T Consensus 71 -----------~~l~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~ 128 (454)
T 1jl5_A 71 -----------RQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD 128 (454)
T ss_dssp -----------HTCSEEECTTSCCSCCCSC------CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS
T ss_pred -----------cCCCEEEecCCccccCCCC------cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC
Confidence 2233444444433322210 1244445555554444 3321 244555555555554 2322
Q ss_pred HHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccC
Q 037427 358 WLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQL 437 (829)
Q Consensus 358 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~ 437 (829)
. .++|++|++++|.+++ +| .+..+++|++|++++|++++ +|.
T Consensus 129 ~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~------------------------------- 170 (454)
T 1jl5_A 129 L----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPD------------------------------- 170 (454)
T ss_dssp C----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCC-------------------------------
T ss_pred C----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCC-------------------------------
Confidence 1 1345555555555544 22 34444555555555554442 221
Q ss_pred ccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCC
Q 037427 438 FSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLN 517 (829)
Q Consensus 438 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 517 (829)
. .++|++|++++|++++ +| .++++++|++|++++|++++ +|... ++|++|++++|.+. .+| .+..++
T Consensus 171 --~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~ 237 (454)
T 1jl5_A 171 --L---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLP 237 (454)
T ss_dssp --C---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCT
T ss_pred --C---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCC
Confidence 1 1244444444444443 23 24444455555555554442 22211 34455555555444 233 244455
Q ss_pred CCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEcc
Q 037427 518 YLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILA 597 (829)
Q Consensus 518 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 597 (829)
+|++|++++|++++ +|.. .++|++|++++|++.+ +|.. .++|++|++++|++++. |.. .++|++|+++
T Consensus 238 ~L~~L~l~~N~l~~-l~~~--~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~ 305 (454)
T 1jl5_A 238 FLTTIYADNNLLKT-LPDL--PPSLEALNVRDNYLTD-LPEL----PQSLTFLDVSENIFSGL-SEL---PPNLYYLNAS 305 (454)
T ss_dssp TCCEEECCSSCCSS-CCSC--CTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSEE-SCC---CTTCCEEECC
T ss_pred CCCEEECCCCcCCc-cccc--ccccCEEECCCCcccc-cCcc----cCcCCEEECcCCccCcc-cCc---CCcCCEEECc
Confidence 55555555555442 2221 2445555555555433 3321 24555555555555531 110 1355556666
Q ss_pred CCcccccCCcccCCC-CCCCEEECcCCcCcc
Q 037427 598 NNNLEGEVPNQLCGL-KQLRLIDLSNNNLFG 627 (829)
Q Consensus 598 ~n~l~~~~~~~l~~l-~~L~~L~Ls~N~l~~ 627 (829)
+|++++ ++ .+ ++|++|++++|++++
T Consensus 306 ~N~l~~-i~----~~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 306 SNEIRS-LC----DLPPSLEELNVSNNKLIE 331 (454)
T ss_dssp SSCCSE-EC----CCCTTCCEEECCSSCCSC
T ss_pred CCcCCc-cc----CCcCcCCEEECCCCcccc
Confidence 555553 11 12 355666666665553
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.5e-39 Score=358.83 Aligned_cols=421 Identities=20% Similarity=0.246 Sum_probs=209.4
Q ss_pred CCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCC
Q 037427 149 LSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGH 228 (829)
Q Consensus 149 L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~ 228 (829)
.++|++|++++|.+ |.+| ..++++++|++|++++|.+.+.+|..++++++|+.+++..|.. .+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP--~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~--------------~~ 72 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMP--VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD--------------RQ 72 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH--------------HT
T ss_pred cccchhhhcccCch-hhCC--hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc--------------cC
Confidence 46677777777776 5666 5666666666666666666666666666666665555544421 24
Q ss_pred CcEEECCCccCccccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCC
Q 037427 229 LQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESS 308 (829)
Q Consensus 229 L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~ 308 (829)
+++|++++|.+++ +|. ..++|++|++++|.+++ ++. ..+
T Consensus 73 l~~L~l~~~~l~~-lp~----------------~~~~L~~L~l~~n~l~~-lp~----~~~------------------- 111 (454)
T 1jl5_A 73 AHELELNNLGLSS-LPE----------------LPPHLESLVASCNSLTE-LPE----LPQ------------------- 111 (454)
T ss_dssp CSEEECTTSCCSC-CCS----------------CCTTCSEEECCSSCCSS-CCC----CCT-------------------
T ss_pred CCEEEecCCcccc-CCC----------------CcCCCCEEEccCCcCCc-ccc----ccC-------------------
Confidence 6788888887764 331 13577888888887764 331 123
Q ss_pred CCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCC
Q 037427 309 HSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHW 388 (829)
Q Consensus 309 ~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 388 (829)
+|++|++++|.+.+. |.. .++|++|++++|++.+ +|. ++++++|++|++++|.+++ +|.. ..
T Consensus 112 -------~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp~--~~~l~~L~~L~l~~N~l~~-lp~~---~~ 173 (454)
T 1jl5_A 112 -------SLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LPE--LQNSSFLKIIDVDNNSLKK-LPDL---PP 173 (454)
T ss_dssp -------TCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSC-CCCC---CT
T ss_pred -------CCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Ccc--cCCCCCCCEEECCCCcCcc-cCCC---cc
Confidence 455555555555442 211 1589999999999985 884 7899999999999999986 3332 24
Q ss_pred CCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCC
Q 037427 389 HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNC 468 (829)
Q Consensus 389 ~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 468 (829)
+|++|++++|.+++ +| .+ .++++|++|++++|.+++ +|.. .++|++|++++|.++ .+|. +..+
T Consensus 174 ~L~~L~L~~n~l~~-l~-~~---------~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l 236 (454)
T 1jl5_A 174 SLEFIAAGNNQLEE-LP-EL---------QNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNL 236 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CC---------TTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTC
T ss_pred cccEEECcCCcCCc-Cc-cc---------cCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCC
Confidence 78888888888775 33 11 234566666666666654 2221 235556666666555 3442 5555
Q ss_pred CCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEcc
Q 037427 469 SRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLS 548 (829)
Q Consensus 469 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~ 548 (829)
++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .++|++|+++
T Consensus 237 ~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-------------------------l~~~--~~~L~~L~ls 285 (454)
T 1jl5_A 237 PFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-------------------------LPEL--PQSLTFLDVS 285 (454)
T ss_dssp TTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-------------------------CCCC--CTTCCEEECC
T ss_pred CCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-------------------------cCcc--cCcCCEEECc
Confidence 555555555555553 2221 2445555555554443 2221 2445555555
Q ss_pred CCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcC-CCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCcc
Q 037427 549 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERL-IRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFG 627 (829)
Q Consensus 549 ~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 627 (829)
+|++.+ ++. + .++|++|++++|++++ ++ .+ ++|++|++++|++++ +|.. +++|++|++++|++++
T Consensus 286 ~N~l~~-l~~--~--~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~ 351 (454)
T 1jl5_A 286 ENIFSG-LSE--L--PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE 351 (454)
T ss_dssp SSCCSE-ESC--C--CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred CCccCc-ccC--c--CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc
Confidence 555533 111 1 1466777777777664 22 22 477788888887774 5543 4678888888887763
Q ss_pred CCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCC--C
Q 037427 628 QIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG--E 705 (829)
Q Consensus 628 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~ 705 (829)
+|. . +++|++|++++|++++ .
T Consensus 352 -lp~---~-----------------------------------------------------l~~L~~L~L~~N~l~~l~~ 374 (454)
T 1jl5_A 352 -VPE---L-----------------------------------------------------PQNLKQLHVEYNPLREFPD 374 (454)
T ss_dssp -CCC---C-----------------------------------------------------CTTCCEEECCSSCCSSCCC
T ss_pred -ccc---h-----------------------------------------------------hhhccEEECCCCCCCcCCC
Confidence 443 1 1267788888888887 6
Q ss_pred CCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcc--cCCcccccCCCCcEEeccCCcceeecCCC
Q 037427 706 IPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG--KIPPQLVELNALVVFSVAHNNLSAAERNP 781 (829)
Q Consensus 706 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 781 (829)
+|..++. |+.|.+.+.+|.. +++|+.||+++|++++ .+|.+ ++.|.+.+|.+.+.+|..
T Consensus 375 ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 375 IPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp CCTTCCE--------EECCC----------------------------------------------------------
T ss_pred ChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCccccC
Confidence 6665543 3457777777764 4788899999999987 66654 455678888888887754
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.1e-38 Score=335.90 Aligned_cols=205 Identities=29% Similarity=0.496 Sum_probs=120.0
Q ss_pred CCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCcc--ccceEecCCC--CcEEEEEcCCCcccccccccccCcccc
Q 037427 19 EGCLEQERSALLRLKHDFFNDPFNLENWVDDENHSDCCK--WEGVECNTST--GRVKALYLSSKRQFLYSTAGQLNASLL 94 (829)
Q Consensus 19 ~~~~~~~~~~ll~~k~~~~~~~~~l~~w~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~~~~~l 94 (829)
+.|.++|++||++||+++.++. .+++|. .+++||. |+||+|+..+ ++|++|+|+++.+ .+...+ +..+
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l---~~~~~~-~~~l 72 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL---PKPYPI-PSSL 72 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCC---SSCEEC-CGGG
T ss_pred CCCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCc---cCCccc-ChhH
Confidence 3699999999999999997554 789996 4568998 9999998654 7899999887754 121011 2344
Q ss_pred cCCCCCcEEeCCC-CCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCcccccc
Q 037427 95 TPFQQLETLHLDS-NNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLD 173 (829)
Q Consensus 95 ~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~ 173 (829)
..+++|++|++++ |.+.+.+|.. +.++++|++|++++|.+++.+|..|.++++|++|+|++|.+++.+| ..+.
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~ 146 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP--PSIS 146 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC--GGGG
T ss_pred hCCCCCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC--hHHh
Confidence 5555555555553 5555444432 4555555555555555555555555555555555555555554444 4455
Q ss_pred CCCCCCEEecCCCCCCchhhHhhhcCC-CCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCcc
Q 037427 174 NFTNLEDLTLDYSSLHISILKSIAAFT-SLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRG 241 (829)
Q Consensus 174 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g 241 (829)
++++|++|++++|.+++.+|..++.++ +|++|++++|++.+.+|. .+..++ |++|++++|.+++
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~---~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP---TFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG---GGGGCC-CSEEECCSSEEEE
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh---HHhCCc-ccEEECcCCcccC
Confidence 555555555555555544455555544 455555555555444444 333333 4444544444443
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.8e-36 Score=333.22 Aligned_cols=210 Identities=18% Similarity=0.135 Sum_probs=120.3
Q ss_pred hhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhcccc
Q 037427 335 LYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPS 414 (829)
Q Consensus 335 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~ 414 (829)
+..+++|+.|++++|++++ ++ ++.+++|++|++++|++++. | +..+++|+.|++++|++++..+
T Consensus 187 l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~~--------- 250 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELDV--------- 250 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCC---------
T ss_pred cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcCH---------
Confidence 3444556666666666663 22 45566666666666666652 2 5555566666666665554211
Q ss_pred ccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCC
Q 037427 415 HLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSS 494 (829)
Q Consensus 415 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 494 (829)
..+++|+.|+++.| +|+.|++++|.+.+.+| ++.+++
T Consensus 251 ---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--------------------------~~~l~~ 287 (457)
T 3bz5_A 251 ---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--------------------------AEGCRK 287 (457)
T ss_dssp ---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--------------------------CTTCTT
T ss_pred ---HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--------------------------cccccc
Confidence 01234455544432 23344444444444433 234444
Q ss_pred CCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccC
Q 037427 495 LNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSY 574 (829)
Q Consensus 495 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~ 574 (829)
|+.|++++|...+.+|. ..++|+.|++++| ++|++|++++|++++ ++ +..+++|+.|++++
T Consensus 288 L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------------~~L~~L~L~~N~l~~-l~---l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDC---QAAGITELDLSQN------------PKLVYLYLNNTELTE-LD---VSHNTKLKSLSCVN 348 (457)
T ss_dssp CCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------------TTCCEEECTTCCCSC-CC---CTTCTTCSEEECCS
T ss_pred CCEEECCCCcccceecc---CCCcceEechhhc------------ccCCEEECCCCcccc-cc---cccCCcCcEEECCC
Confidence 44444444444444432 2234444444443 356666666666655 32 67788888888888
Q ss_pred CcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccC
Q 037427 575 NSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN 635 (829)
Q Consensus 575 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 635 (829)
|++++ ++.|..|++++|.+.|. ..+..|+.+++++|+++|.+|..+..
T Consensus 349 N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 349 AHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp SCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred CCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 88875 24566677888888765 24556778889999999988876543
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.2e-36 Score=334.30 Aligned_cols=350 Identities=16% Similarity=0.133 Sum_probs=200.6
Q ss_pred hhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccc
Q 037427 334 FLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFP 413 (829)
Q Consensus 334 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~ 413 (829)
.+..+++|++|++++|.+.+ +|. ++.+++|++|++++|.+++. .+..+++|++|++++|.+++. |
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-~~~--l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~-~-------- 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-MTG--IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL-D-------- 101 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-CTT--GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--------
T ss_pred ChhHcCCCCEEEccCCCccc-Chh--hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee-e--------
Confidence 34444445555555554442 231 34445555555555554442 144444555555555544431 1
Q ss_pred cccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCC
Q 037427 414 SHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLS 493 (829)
Q Consensus 414 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 493 (829)
+..+++|++|++++|.+++. + +..+++|++|++++|++++. + ++.+++|++|++++|+..+.+ .+..++
T Consensus 102 ---~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 102 ---VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp ---CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred ---cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCC
Confidence 11234455555555554442 1 44445555555555555432 1 444455555555555333232 244445
Q ss_pred CCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEcc
Q 037427 494 SLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLS 573 (829)
Q Consensus 494 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls 573 (829)
+|++|++++|++++. | +..+++|+.|++++|++++. ....+++|++|++++|++.+ +| +..+++|++|+++
T Consensus 171 ~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 171 QLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCS 241 (457)
T ss_dssp TCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECC
T ss_pred cCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEee
Confidence 555555555555432 2 44445555555555555432 12244455555555555543 33 3444555555555
Q ss_pred CCcCCCcchhhhhcCC-------CCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCC
Q 037427 574 YNSFSGNIPYWIERLI-------RLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVG 646 (829)
Q Consensus 574 ~n~l~~~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 646 (829)
+|++++..+..+.++. +|+.|++++|.+.+.+| +..+++|+.|++++|+..+.+|.....+....
T Consensus 242 ~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~------ 313 (457)
T 3bz5_A 242 VNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD------ 313 (457)
T ss_dssp SSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC------
T ss_pred CCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec------
Confidence 5555544332222222 45667777887777766 56789999999999998888875433332000
Q ss_pred CCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCC
Q 037427 647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNL 726 (829)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 726 (829)
....++|++|++++|++++. + ++.+++|+.|++++|++
T Consensus 314 ---------------------------------------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 314 ---------------------------------------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp ---------------------------------------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCC
T ss_pred ---------------------------------------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCC
Confidence 01235899999999999974 3 89999999999999999
Q ss_pred CCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCC
Q 037427 727 TGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNP 781 (829)
Q Consensus 727 ~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 781 (829)
++. +.|+.|++++|+++|. ..+..|..+++++|+++|.||..
T Consensus 352 ~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 352 QDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 962 5677889999999986 24557788999999999999975
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.4e-35 Score=329.11 Aligned_cols=343 Identities=25% Similarity=0.366 Sum_probs=191.2
Q ss_pred CccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEc
Q 037427 316 QLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHV 395 (829)
Q Consensus 316 ~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 395 (829)
++++|+++++.+.. +|. +..+++|++|++++|.+.+ +|. +..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 47 ~l~~L~l~~~~i~~-l~~-~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 47 QVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp TCCEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred cccEEecCCCCCcc-Ccc-hhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 45555555555433 222 4445555555555555542 232 3455555555555555554332 444455555555
Q ss_pred cCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEE
Q 037427 396 SKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLY 475 (829)
Q Consensus 396 s~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 475 (829)
++|.+ ++..+ +..+++|++|++++|.+.+ ++ .+..+++|++|+
T Consensus 120 ~~n~l---------------------------------~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~ 162 (466)
T 1o6v_A 120 FNNQI---------------------------------TDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLS 162 (466)
T ss_dssp CSSCC---------------------------------CCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEE
T ss_pred CCCCC---------------------------------CCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEee
Confidence 55544 43322 4444455555555554443 22 244455555555
Q ss_pred CCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCc
Q 037427 476 MSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGP 555 (829)
Q Consensus 476 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~ 555 (829)
++ |.+.+.. .+.++++|++|++++|.+.+. ..+..+++|++|++++|.+.+..| ...+++|++|++++|.+.+
T Consensus 163 l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~- 235 (466)
T 1o6v_A 163 FG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD- 235 (466)
T ss_dssp EE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-
T ss_pred cC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-
Confidence 53 2232221 144555555555555554432 124455555555555555543333 2244555555555555533
Q ss_pred CCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccC
Q 037427 556 LKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN 635 (829)
Q Consensus 556 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 635 (829)
++ .+..+++|++|++++|++.+..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++..| +..
T Consensus 236 ~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~ 307 (466)
T 1o6v_A 236 IG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 307 (466)
T ss_dssp CG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG
T ss_pred ch--hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC
Confidence 22 25666777777777777765544 6667777777777777764433 6667777777777777664332 221
Q ss_pred CCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCC
Q 037427 636 TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTN 715 (829)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 715 (829)
+++|+.|++++|++++..| +..+++
T Consensus 308 -----------------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~ 332 (466)
T 1o6v_A 308 -----------------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTK 332 (466)
T ss_dssp -----------------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred -----------------------------------------------------CCCCCEEECcCCcCCCchh--hccCcc
Confidence 2367777777777776554 567777
Q ss_pred CCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCccee
Q 037427 716 IRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA 776 (829)
Q Consensus 716 L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 776 (829)
|+.|++++|++++. ..+.++++|+.|++++|++++.+| +..+++|++|++++|++++
T Consensus 333 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 77777777777755 356777777777777777776665 6677777777777777776
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=334.66 Aligned_cols=322 Identities=18% Similarity=0.182 Sum_probs=254.7
Q ss_pred CCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCC
Q 037427 390 LDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCS 469 (829)
Q Consensus 390 L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 469 (829)
-+.++.+++.++ .+|..+. .++++|++++|.+++..+..|..+++|++|++++|.+++..|..|.+++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~-----------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 80 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP-----------TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC-----------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCEEEeCCCCcC-cCCCCCC-----------CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc
Confidence 357888888776 4555432 3788899999998888888888888999999999988877788888888
Q ss_pred CCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEcc
Q 037427 470 RLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLS 548 (829)
Q Consensus 470 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~ 548 (829)
+|++|++++|++++..+..|.++++|++|++++|++.+..+..|..+++|++|++++|.+.+..+..+ .+++|++|+++
T Consensus 81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160 (477)
T ss_dssp TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE
T ss_pred cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECC
Confidence 99999999998886666678888889999999998888888888888888999998888887766655 77888888888
Q ss_pred CCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccC
Q 037427 549 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQ 628 (829)
Q Consensus 549 ~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 628 (829)
+|++.+ ++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.+|.......+|+.|++++|++++.
T Consensus 161 ~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 161 KCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp SCCCSS-CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred CCcCcc-cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence 888754 4444477888888888888888877777788888888888888877777776666666888888888887643
Q ss_pred CCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCc
Q 037427 629 IPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP 708 (829)
Q Consensus 629 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~ 708 (829)
.+..+..+ ++|+.|+|++|++++..+.
T Consensus 240 ~~~~~~~l-----------------------------------------------------~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 240 PYLAVRHL-----------------------------------------------------VYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp CHHHHTTC-----------------------------------------------------TTCCEEECCSSCCCEECTT
T ss_pred CHHHhcCc-----------------------------------------------------cccCeeECCCCcCCccChh
Confidence 22333332 3788888888888877777
Q ss_pred ccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceee
Q 037427 709 QIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAA 777 (829)
Q Consensus 709 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 777 (829)
.|..+++|+.|+|++|++++..|..|..+++|+.|||++|++++..+..|..+++|++|++++|++.+.
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 788888888888888888888888888888888888888888876667778888888888888888743
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.9e-34 Score=323.85 Aligned_cols=347 Identities=24% Similarity=0.333 Sum_probs=236.0
Q ss_pred cCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCC
Q 037427 286 FNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPN 365 (829)
Q Consensus 286 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~ 365 (829)
..+++++.|+++++.+...+. .....+|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++. +.++++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~----~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~ 113 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTN 113 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTT
T ss_pred hHhccccEEecCCCCCccCcc----hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCC
Confidence 346788999999998876542 3446799999999999988765 8999999999999999985 444 689999
Q ss_pred CCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCcccccccc
Q 037427 366 LSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLR 445 (829)
Q Consensus 366 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 445 (829)
|++|++++|.+++..+ +..+++|++|++++|.+.+ ++. +..+++|++|+++ |.+.+.. .+..++
T Consensus 114 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~----------~~~l~~L~~L~l~-~~~~~~~--~~~~l~ 177 (466)
T 1o6v_A 114 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISA----------LSGLTSLQQLSFG-NQVTDLK--PLANLT 177 (466)
T ss_dssp CCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGG----------GTTCTTCSEEEEE-ESCCCCG--GGTTCT
T ss_pred CCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Chh----------hccCCcccEeecC-CcccCch--hhccCC
Confidence 9999999999987543 7778888888888887764 221 1234566666664 3333322 255556
Q ss_pred CCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCC
Q 037427 446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLS 525 (829)
Q Consensus 446 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 525 (829)
+|++|++++|.+++. ..+..+++|++|++++|.+.+..| ++.+++|++|++++|++++. ..+..+++|+.|+++
T Consensus 178 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA 251 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECC
Confidence 666666666665532 225555566666666665554433 44455555555555555432 234455555555555
Q ss_pred CCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccC
Q 037427 526 ENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEV 605 (829)
Q Consensus 526 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 605 (829)
+|.++ +..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++..
T Consensus 252 ~n~l~-----------------------~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 303 (466)
T 1o6v_A 252 NNQIS-----------------------NLAP---LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 303 (466)
T ss_dssp SSCCC-----------------------CCGG---GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG
T ss_pred CCccc-----------------------cchh---hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch
Confidence 55544 3222 5566777777777777775544 666777777777777776543
Q ss_pred CcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeec
Q 037427 606 PNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYK 685 (829)
Q Consensus 606 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (829)
+ +..+++|+.|++++|++++..| +..
T Consensus 304 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~-------------------------------------------------- 329 (466)
T 1o6v_A 304 P--ISNLKNLTYLTLYFNNISDISP--VSS-------------------------------------------------- 329 (466)
T ss_dssp G--GGGCTTCSEEECCSSCCSCCGG--GGG--------------------------------------------------
T ss_pred h--hcCCCCCCEEECcCCcCCCchh--hcc--------------------------------------------------
Confidence 3 6677777777777777765444 222
Q ss_pred CCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcc
Q 037427 686 GKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG 752 (829)
Q Consensus 686 ~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 752 (829)
+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 330 ---l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 330 ---LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ---CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ---CccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 23677788888887754 467788888888888888887776 7788888888888888886
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=333.27 Aligned_cols=347 Identities=19% Similarity=0.135 Sum_probs=294.0
Q ss_pred CCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCcccccccc
Q 037427 366 LSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLR 445 (829)
Q Consensus 366 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 445 (829)
-+.++.+++.++.. |..+ .+.++.|++++|.+++..|..+ .++++|++|++++|.+++..|..|..++
T Consensus 13 ~~~v~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~~~~~~~---------~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 80 (477)
T 2id5_A 13 DRAVLCHRKRFVAV-PEGI--PTETRLLDLGKNRIKTLNQDEF---------ASFPHLEELELNENIVSAVEPGAFNNLF 80 (477)
T ss_dssp TTEEECCSCCCSSC-CSCC--CTTCSEEECCSSCCCEECTTTT---------TTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCEEEeCCCCcCcC-CCCC--CCCCcEEECCCCccceECHhHc---------cCCCCCCEEECCCCccCEeChhhhhCCc
Confidence 35788888888753 4333 3689999999999987544443 3468999999999999999899999999
Q ss_pred CCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCC
Q 037427 446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLS 525 (829)
Q Consensus 446 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 525 (829)
+|++|++++|++++..+..|.++++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|+++
T Consensus 81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160 (477)
T ss_dssp TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE
T ss_pred cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECC
Confidence 99999999999997766778999999999999999998888999999999999999999998888999999999999999
Q ss_pred CCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCccccc
Q 037427 526 ENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE 604 (829)
Q Consensus 526 ~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 604 (829)
+|.+++..+..+ .+++|+.|++++|.+.+..+. .|..+++|+.|++++|.+.+.+|.......+|++|++++|++++.
T Consensus 161 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY-SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp SCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT-CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred CCcCcccChhHhcccCCCcEEeCCCCcCcEeChh-hcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence 999986554444 789999999999999765544 499999999999999998888888777778999999999999965
Q ss_pred CCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeee
Q 037427 605 VPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSY 684 (829)
Q Consensus 605 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (829)
.+..+..+++|+.|+|++|++++..+..+..+.
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----------------------------------------------- 272 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL----------------------------------------------- 272 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT-----------------------------------------------
T ss_pred CHHHhcCccccCeeECCCCcCCccChhhccccc-----------------------------------------------
Confidence 557899999999999999999877666665544
Q ss_pred cCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCC
Q 037427 685 KGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNAL 764 (829)
Q Consensus 685 ~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L 764 (829)
+|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++....+.. .-....
T Consensus 273 ------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~ 345 (477)
T 2id5_A 273 ------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRR 345 (477)
T ss_dssp ------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTT
T ss_pred ------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhh
Confidence 8999999999999999999999999999999999999888888999999999999999998643311 111233
Q ss_pred cEEeccCCcceeecC
Q 037427 765 VVFSVAHNNLSAAER 779 (829)
Q Consensus 765 ~~L~ls~N~l~g~ip 779 (829)
..+++.++.....-|
T Consensus 346 ~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 346 WRLNFNRQQPTCATP 360 (477)
T ss_dssp TSSCCTTCCCBEEES
T ss_pred hccccCccCceeCCc
Confidence 345556665554444
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.5e-33 Score=305.46 Aligned_cols=287 Identities=21% Similarity=0.206 Sum_probs=185.2
Q ss_pred CCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEE
Q 037427 420 CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIM 499 (829)
Q Consensus 420 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 499 (829)
+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|+++...+..+.++++|++|+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 34566666666666655555566666666666666666655555566666666666666666643333456666666666
Q ss_pred ccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCC
Q 037427 500 MASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG 579 (829)
Q Consensus 500 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 579 (829)
+++|++.+..+..+..+++|++|++++|.+++. ....+++|+.|++++|.+.+ +...++|+.|++++|.+..
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~------~~~~~~L~~L~l~~n~l~~ 219 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINV 219 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSE------EECCSSCSEEECCSSCCCE
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccccccc------cCCCCcceEEECCCCeeee
Confidence 666666665555666666666666666666543 12245566666666666533 2233567777777777664
Q ss_pred cchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccc
Q 037427 580 NIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTT 659 (829)
Q Consensus 580 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (829)
. |.. ..++|+.|++++|.+++. ..+..+++|++|++++|++++..|..+..++
T Consensus 220 ~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---------------------- 272 (390)
T 3o6n_A 220 V-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ---------------------- 272 (390)
T ss_dssp E-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS----------------------
T ss_pred c-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccc----------------------
Confidence 3 222 235677777777777642 4566677777777777777666565554433
Q ss_pred eecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCcccccccccc
Q 037427 660 YFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQ 739 (829)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 739 (829)
+|+.|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++
T Consensus 273 -------------------------------~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~ 319 (390)
T 3o6n_A 273 -------------------------------RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 319 (390)
T ss_dssp -------------------------------SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred -------------------------------cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCc
Confidence 67777777777773 4556667788888888888887 45666777888
Q ss_pred CCeeecCCCcCcccCCcccccCCCCcEEeccCCcceee
Q 037427 740 VESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAA 777 (829)
Q Consensus 740 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 777 (829)
|+.|+|++|+++.. | +..+++|++|++++|++++.
T Consensus 320 L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 320 LENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 88888888888743 3 56677888888888888754
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.8e-33 Score=302.79 Aligned_cols=310 Identities=21% Similarity=0.238 Sum_probs=202.7
Q ss_pred CCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCC
Q 037427 96 PFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNF 175 (829)
Q Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l 175 (829)
.++++++|+++++.+....+. .+..+++|++|++++|.+++..+..|+++++|++|+|++|.+++..| ..++++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~----~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l 116 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP--HVFQNV 116 (390)
T ss_dssp GGCCCSEEEEESCEESEECTH----HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTC
T ss_pred ccCCceEEEecCCchhhCChh----HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH--HHhcCC
Confidence 467888888888887765443 26678888888888888887777788888888888888888886655 667888
Q ss_pred CCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccCCccCccccccc
Q 037427 176 TNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNI 255 (829)
Q Consensus 176 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i 255 (829)
++|++|++++|.++...+..++++++|++|++++|.+.+..|. .+.++++|++|++++|.+++.
T Consensus 117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~------------- 180 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD---TFQATTSLQNLQLSSNRLTHV------------- 180 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT---TTSSCTTCCEEECCSSCCSBC-------------
T ss_pred CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh---hccCCCCCCEEECCCCcCCcc-------------
Confidence 8888888888888866555578888888888888888776665 677788888888888877631
Q ss_pred CCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhh
Q 037427 256 SSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFL 335 (829)
Q Consensus 256 ~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l 335 (829)
.+..+++|+.|++++|.+.+ +...++|+.|++++|.+...+.
T Consensus 181 ---~~~~l~~L~~L~l~~n~l~~------~~~~~~L~~L~l~~n~l~~~~~----------------------------- 222 (390)
T 3o6n_A 181 ---DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINVVRG----------------------------- 222 (390)
T ss_dssp ---CGGGCTTCSEEECCSSCCSE------EECCSSCSEEECCSSCCCEEEC-----------------------------
T ss_pred ---ccccccccceeecccccccc------cCCCCcceEEECCCCeeeeccc-----------------------------
Confidence 23566778888888877653 2233455555555555443321
Q ss_pred hCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccc
Q 037427 336 YNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSH 415 (829)
Q Consensus 336 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~ 415 (829)
...++|+.|++++|.+++ .+ + +..+++|++|++++|.+++..+..+..+++|++|++++|++++ +|...
T Consensus 223 ~~~~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~------- 291 (390)
T 3o6n_A 223 PVNVELTILKLQHNNLTD-TA-W-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYG------- 291 (390)
T ss_dssp CCCSSCCEEECCSSCCCC-CG-G-GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSS-------
T ss_pred cccccccEEECCCCCCcc-cH-H-HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCccc-------
Confidence 112456666676666663 22 2 5567777777777777776666666666677777777766653 22111
Q ss_pred cccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCC
Q 037427 416 LAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLY 482 (829)
Q Consensus 416 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 482 (829)
..+++|++|++++|.+++ +|..+..+++|++|++++|.++.. + +..+++|++|++++|++.
T Consensus 292 --~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 292 --QPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp --SCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred --CCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCcc
Confidence 123455555555555552 333344455555555555555532 1 344455555555555544
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-32 Score=317.91 Aligned_cols=286 Identities=21% Similarity=0.212 Sum_probs=159.8
Q ss_pred CcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEc
Q 037427 421 FNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMM 500 (829)
Q Consensus 421 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 500 (829)
++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|+++++|++|++++|.+++..+..|+++++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 44555555555555544445555555555555555555544455555555555555555555433334455555555555
Q ss_pred cCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCc
Q 037427 501 ASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 580 (829)
Q Consensus 501 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 580 (829)
++|.+++..|..|..+++|++|++++|.+++.. ...+++|+.|++++|.+.+ +...++|+.|++++|.+...
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~------l~~~~~L~~L~ls~n~l~~~ 226 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINVV 226 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE------EECCTTCSEEECCSSCCCEE
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc------ccCCchhheeeccCCccccc
Confidence 555555555555555555555555555555321 1234555555555555532 22334566666666665533
Q ss_pred chhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccce
Q 037427 581 IPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTY 660 (829)
Q Consensus 581 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (829)
.+. + .++|+.|++++|.+++ +..+..+++|+.|+|++|.+++..|..++.+.
T Consensus 227 ~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----------------------- 278 (597)
T 3oja_B 227 RGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ----------------------- 278 (597)
T ss_dssp ECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS-----------------------
T ss_pred ccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCcc-----------------------
Confidence 221 1 2456666666666653 24555666666666666666655555444433
Q ss_pred ecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccC
Q 037427 661 FVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQV 740 (829)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 740 (829)
+|+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..+..+++|
T Consensus 279 ------------------------------~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L 326 (597)
T 3oja_B 279 ------------------------------RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326 (597)
T ss_dssp ------------------------------SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred ------------------------------CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence 56666666666663 4555556666777777777766 455566666777
Q ss_pred CeeecCCCcCcccCCcccccCCCCcEEeccCCcceee
Q 037427 741 ESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAA 777 (829)
Q Consensus 741 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 777 (829)
+.|+|++|++++. | +..+++|+.|++++|++++.
T Consensus 327 ~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 327 ENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 7777777776643 2 44556677777777776654
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.6e-31 Score=288.48 Aligned_cols=307 Identities=19% Similarity=0.287 Sum_probs=195.3
Q ss_pred hhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCcc
Q 037427 360 LKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFS 439 (829)
Q Consensus 360 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~ 439 (829)
+..+++|++|+++++.+... ..+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++. .
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~-~~~----------~~~l~~L~~L~L~~n~i~~~--~ 104 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITD-ISP----------LSNLVKLTNLYIGTNKITDI--S 104 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG----------GTTCTTCCEEECCSSCCCCC--G
T ss_pred chhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCcccc-chh----------hhcCCcCCEEEccCCcccCc--h
Confidence 34678888888888887653 235556666666666666653 111 12344555555555555432 2
Q ss_pred ccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCC
Q 037427 440 KKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYL 519 (829)
Q Consensus 440 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 519 (829)
.+..+++|++|++++|.+++. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L 179 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDL 179 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCC
Confidence 344555555555555555432 22 4455555555555554332222 24455555555555555443322 4444444
Q ss_pred CEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCC
Q 037427 520 EILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN 599 (829)
Q Consensus 520 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 599 (829)
+ +|++++|.+.+ ++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|
T Consensus 180 ~-----------------------~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 180 Y-----------------------SLSLNYNQIED-ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231 (347)
T ss_dssp S-----------------------EEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred C-----------------------EEEccCCcccc-ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence 4 44554444432 221 5667778888888888776554 677788888888888
Q ss_pred cccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeeccc
Q 037427 600 NLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKE 679 (829)
Q Consensus 600 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (829)
++++..+ +..+++|++|++++|++++. + .+.
T Consensus 232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~--------------------------------------------- 262 (347)
T 4fmz_A 232 KITDLSP--LANLSQLTWLEIGTNQISDI-N-AVK--------------------------------------------- 262 (347)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGT---------------------------------------------
T ss_pred ccCCCcc--hhcCCCCCEEECCCCccCCC-h-hHh---------------------------------------------
Confidence 8874433 77888888888888887642 1 121
Q ss_pred ceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccc
Q 037427 680 ISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLV 759 (829)
Q Consensus 680 ~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~ 759 (829)
.+++|+.|++++|++++. ..+..+++|+.|++++|++++..|..++.+++|+.|++++|++++..| +.
T Consensus 263 --------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~ 330 (347)
T 4fmz_A 263 --------DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330 (347)
T ss_dssp --------TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred --------cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence 234788888888888854 457888999999999999998888888889999999999999987666 78
Q ss_pred cCCCCcEEeccCCcce
Q 037427 760 ELNALVVFSVAHNNLS 775 (829)
Q Consensus 760 ~l~~L~~L~ls~N~l~ 775 (829)
.+++|++|++++|+++
T Consensus 331 ~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 331 SLSKMDSADFANQVIK 346 (347)
T ss_dssp GCTTCSEESSSCC---
T ss_pred hhhccceeehhhhccc
Confidence 8889999999999875
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.5e-32 Score=316.03 Aligned_cols=290 Identities=20% Similarity=0.228 Sum_probs=255.6
Q ss_pred CCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEE
Q 037427 420 CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIM 499 (829)
Q Consensus 420 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 499 (829)
+.+++.+++++|.+....+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45789999999999887777788999999999999999988888999999999999999999998888899999999999
Q ss_pred ccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCC
Q 037427 500 MASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 578 (829)
Q Consensus 500 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~ 578 (829)
+++|.+++..+..|..+++|++|++++|.+++..|..+ .+++|++|++++|.+.+. + +..+++|+.|++++|.++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C---GGGCTTCSEEECCSSCCS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C---hhhhhhhhhhhcccCccc
Confidence 99999997777778999999999999999998888766 889999999999999653 3 567899999999999987
Q ss_pred CcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCcc
Q 037427 579 GNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRT 658 (829)
Q Consensus 579 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (829)
+ +...++|+.|++++|.+....+ .+ .++|+.|++++|.+++. ..+..
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--~~l~~----------------------- 252 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--AWLLN----------------------- 252 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--GGGGG-----------------------
T ss_pred c-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--hhhcc-----------------------
Confidence 5 3345689999999999984433 32 36899999999999862 33332
Q ss_pred ceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccc
Q 037427 659 TYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLN 738 (829)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 738 (829)
+++|+.|+|++|.+++.+|..|+.+++|+.|+|++|.+++ +|..+..++
T Consensus 253 ------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~ 301 (597)
T 3oja_B 253 ------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 301 (597)
T ss_dssp ------------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT
T ss_pred ------------------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC
Confidence 3489999999999999999999999999999999999996 577788899
Q ss_pred cCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeec
Q 037427 739 QVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAE 778 (829)
Q Consensus 739 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 778 (829)
+|+.|+|++|+++ .+|..+..+++|++|++++|++++..
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC
Confidence 9999999999999 68888999999999999999998763
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.5e-33 Score=296.86 Aligned_cols=252 Identities=29% Similarity=0.454 Sum_probs=171.2
Q ss_pred CCcEEecccccCCC--ccCccCCCCCCCcEEECCC-CcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEE
Q 037427 446 KLARLHLDANYFTG--EIPKSLSNCSRLEGLYMSD-NNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEIL 522 (829)
Q Consensus 446 ~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 522 (829)
+++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..++++++|++|++++|++++.+|..|..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555554 4455555555555555552 44544455555555555555555555544444445455555555
Q ss_pred eCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCC-CCCEEEccCCcc
Q 037427 523 DLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLI-RLRYLILANNNL 601 (829)
Q Consensus 523 ~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l 601 (829)
++++|.++ +.+|.. +..+++|++|++++|++++.+|..+..++ +|++|++++|++
T Consensus 131 ~Ls~N~l~-----------------------~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 131 DFSYNALS-----------------------GTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ECCSSEEE-----------------------SCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred eCCCCccC-----------------------CcCChH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 44444444 445544 66677777777777777777777777776 777777777777
Q ss_pred cccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccce
Q 037427 602 EGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEIS 681 (829)
Q Consensus 602 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (829)
++.+|..+..++ |++|++++|++++.+|..+..+.
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~-------------------------------------------- 221 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK-------------------------------------------- 221 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS--------------------------------------------
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC--------------------------------------------
Confidence 777777777776 77777777777766665555443
Q ss_pred eeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccC
Q 037427 682 FSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVEL 761 (829)
Q Consensus 682 ~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l 761 (829)
+|+.|++++|++++.+|. +..+++|++|+|++|++++.+|..|..+++|+.|||++|+++|.+|.. ..+
T Consensus 222 ---------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 222 ---------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp ---------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred ---------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 677788888888766655 777888888888888888888888888888888888888888888876 778
Q ss_pred CCCcEEeccCCc-ceee
Q 037427 762 NALVVFSVAHNN-LSAA 777 (829)
Q Consensus 762 ~~L~~L~ls~N~-l~g~ 777 (829)
++|+.+++++|+ ++|.
T Consensus 291 ~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 291 QRFDVSAYANNKCLCGS 307 (313)
T ss_dssp GGSCGGGTCSSSEEEST
T ss_pred cccChHHhcCCCCccCC
Confidence 888888888887 6664
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.3e-31 Score=287.18 Aligned_cols=307 Identities=22% Similarity=0.324 Sum_probs=246.9
Q ss_pred hhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhcccc
Q 037427 335 LYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPS 414 (829)
Q Consensus 335 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~ 414 (829)
+..+++|+.|+++++.+. .+|. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++ +| .
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~------- 105 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-A------- 105 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-G-------
T ss_pred chhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-H-------
Confidence 567889999999999998 5665 6789999999999999997544 8899999999999999885 32 1
Q ss_pred ccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCC
Q 037427 415 HLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSS 494 (829)
Q Consensus 415 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 494 (829)
+.++++|++|++++|.+++..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++
T Consensus 106 --~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~ 178 (347)
T 4fmz_A 106 --LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTD 178 (347)
T ss_dssp --GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred --HcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCC
Confidence 3357899999999999987544 8889999999999997665544 48999999999999999986544 889999
Q ss_pred CCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccC
Q 037427 495 LNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSY 574 (829)
Q Consensus 495 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~ 574 (829)
|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++
T Consensus 179 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--------------------------~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--------------------------VANMTRLNSLKIGN 230 (347)
T ss_dssp CSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCS
T ss_pred CCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--------------------------hhcCCcCCEEEccC
Confidence 9999999999986544 7888999999999888764322 44566777777777
Q ss_pred CcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCC
Q 037427 575 NSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNP 654 (829)
Q Consensus 575 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 654 (829)
|++++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|++++. | .+.
T Consensus 231 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~-------------------- 284 (347)
T 4fmz_A 231 NKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLN-------------------- 284 (347)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGG--------------------
T ss_pred CccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhc--------------------
Confidence 77765444 67777888888888877643 4577788888888888887643 1 122
Q ss_pred CCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccc
Q 037427 655 NRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSF 734 (829)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l 734 (829)
.+++|+.|++++|++++..|..++.+++|++|++++|++++..| +
T Consensus 285 ---------------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~ 329 (347)
T 4fmz_A 285 ---------------------------------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L 329 (347)
T ss_dssp ---------------------------------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G
T ss_pred ---------------------------------CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h
Confidence 23478889999999988888889999999999999999998776 8
Q ss_pred cccccCCeeecCCCcCc
Q 037427 735 SNLNQVESLDVSHNNLN 751 (829)
Q Consensus 735 ~~l~~L~~LdLs~N~l~ 751 (829)
..+++|+.||+++|+|+
T Consensus 330 ~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 330 ASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGCTTCSEESSSCC---
T ss_pred hhhhccceeehhhhccc
Confidence 88999999999999986
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.2e-30 Score=274.96 Aligned_cols=268 Identities=20% Similarity=0.268 Sum_probs=175.1
Q ss_pred cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA 501 (829)
Q Consensus 422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 501 (829)
.+++|++++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++|++++|+++ .+|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence 5677777777777666666777777777777777777666777777777888888877777 4454443 677777777
Q ss_pred CCcccCCChhhhhCCCCCCEEeCCCCcCcc--cCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCC
Q 037427 502 SNHLQGPIPLEFCQLNYLEILDLSENNISG--SLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG 579 (829)
Q Consensus 502 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 579 (829)
+|++.+..+..+..+++|++|++++|.+.. ..+. .+..+++|++|++++|+++.
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------------~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG------------------------AFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT------------------------GGGGCTTCCEEECCSSCCCS
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChh------------------------hccCCCCcCEEECCCCcccc
Confidence 777777767777777777777777777652 2222 14455555555555555553
Q ss_pred cchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccc
Q 037427 580 NIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTT 659 (829)
Q Consensus 580 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (829)
+|..+. ++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..+.
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---------------------- 240 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP---------------------- 240 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST----------------------
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC----------------------
Confidence 232222 4666666666666655566666666666666666666655444443332
Q ss_pred eecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccc---
Q 037427 660 YFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSN--- 736 (829)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~--- 736 (829)
+|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 241 -------------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 241 -------------------------------HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288 (330)
T ss_dssp -------------------------------TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred -------------------------------CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence 5666777777766 66666777777777777777777666666543
Q ss_pred ---cccCCeeecCCCcCcc--cCCcccccCCCCcEEeccCCc
Q 037427 737 ---LNQVESLDVSHNNLNG--KIPPQLVELNALVVFSVAHNN 773 (829)
Q Consensus 737 ---l~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~ls~N~ 773 (829)
...|+.|++++|++.. ..|..+..+..++.+++++|+
T Consensus 289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 2667778888887753 455677777778888887774
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.7e-34 Score=323.14 Aligned_cols=356 Identities=20% Similarity=0.218 Sum_probs=175.2
Q ss_pred CccEEEccCCCCCCCcC-hhhhCCCCcCEEEcCCCCCCCC----CchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCC
Q 037427 316 QLESVSLSGSDIHATFP-KFLYNQHDLELVDFSDSNLKGE----FPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHL 390 (829)
Q Consensus 316 ~L~~L~Ls~~~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 390 (829)
++++|++++++++.... ..+..+++|++|++++|.+.+. ++.. +..+++|++|++++|.+++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~------------ 70 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGD------------ 70 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHH------------
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCCh------------
Confidence 56666666666654322 2255566666666666665532 2222 3445566666666655543
Q ss_pred CEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccc----cCccccccccCCcEEecccccCCCccCcc--
Q 037427 391 DALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHG----QLFSKKNYLRKLARLHLDANYFTGEIPKS-- 464 (829)
Q Consensus 391 ~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-- 464 (829)
..+..+...++.. .++|++|++++|.++. .++..+..+++|++|++++|.+++..+..
T Consensus 71 ------------~~~~~l~~~l~~~----~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 134 (461)
T 1z7x_W 71 ------------VGVHCVLQGLQTP----SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC 134 (461)
T ss_dssp ------------HHHHHHHHTTCST----TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHH
T ss_pred ------------HHHHHHHHHHhhC----CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHH
Confidence 2222221111100 0134444444444442 22334444444445555444443222211
Q ss_pred ---CCCCCCCcEEECCCCcCCCCc----ccccCCCCCCCEEEccCCcccCCChhhhh-----CCCCCCEEeCCCCcCccc
Q 037427 465 ---LSNCSRLEGLYMSDNNLYGNI----PARLGNLSSLNDIMMASNHLQGPIPLEFC-----QLNYLEILDLSENNISGS 532 (829)
Q Consensus 465 ---l~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~ 532 (829)
....++|++|++++|++++.. +..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++.
T Consensus 135 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred HHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence 111334555555555544322 33334445555555555554433222222 133555555555544431
Q ss_pred ----CCCCC-CCCcccEEEccCCcccCc----CCccccCCCCCccEEEccCCcCCCc----chhhhhcCCCCCEEEccCC
Q 037427 533 ----LPSCS-SHSTIQQVHLSKNMLYGP----LKYGTFFNRSSIVTLDLSYNSFSGN----IPYWIERLIRLRYLILANN 599 (829)
Q Consensus 533 ----~~~~~-~~~~L~~L~L~~n~l~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n 599 (829)
++..+ .+++|++|++++|.+.+. +....+..+++|++|++++|++++. ++..+..+++|++|++++|
T Consensus 215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 12111 334444444544444321 1111123456677777777766653 4555666677777777777
Q ss_pred cccccCCcccC-----CCCCCCEEECcCCcCccCC----CCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccc
Q 037427 600 NLEGEVPNQLC-----GLKQLRLIDLSNNNLFGQI----PGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKE 670 (829)
Q Consensus 600 ~l~~~~~~~l~-----~l~~L~~L~Ls~N~l~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (829)
.+++..+..+. ..++|+.|++++|.+++.. |..+.
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~------------------------------------ 338 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA------------------------------------ 338 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH------------------------------------
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh------------------------------------
Confidence 66543333222 2256777777777665431 11111
Q ss_pred cceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCccccc-----CCCCCEEECCCCCCCC----CccccccccccCC
Q 037427 671 ESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGK-----LTNIRALNFSHNNLTG----VIPVSFSNLNQVE 741 (829)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~ 741 (829)
.+++|++|++++|++++..+..+.. .++|++|+|++|++++ .+|..+..+++|+
T Consensus 339 -----------------~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 339 -----------------QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp -----------------HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred -----------------hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 1235666777777666554444432 5577777777777765 5666666677777
Q ss_pred eeecCCCcCccc
Q 037427 742 SLDVSHNNLNGK 753 (829)
Q Consensus 742 ~LdLs~N~l~~~ 753 (829)
+|||++|++++.
T Consensus 402 ~L~l~~N~i~~~ 413 (461)
T 1z7x_W 402 ELDLSNNCLGDA 413 (461)
T ss_dssp EEECCSSSCCHH
T ss_pred EEECCCCCCCHH
Confidence 777777777643
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.7e-30 Score=276.62 Aligned_cols=267 Identities=21% Similarity=0.261 Sum_probs=166.8
Q ss_pred cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA 501 (829)
Q Consensus 422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 501 (829)
+|++|++++|.+++..+..+..+++|++|++++|++++..|..|.++++|++|++++|+++ .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 5566666666666555556666666666666666666555666666666666666666666 3443333 566666666
Q ss_pred CCcccCCChhhhhCCCCCCEEeCCCCcCcc--cCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCC
Q 037427 502 SNHLQGPIPLEFCQLNYLEILDLSENNISG--SLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG 579 (829)
Q Consensus 502 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 579 (829)
+|++.+..+..|..+++|++|++++|.++. ..+.. +..+ +|++|++++|++++
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------------~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA------------------------FDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS------------------------SCSC-CCSCCBCCSSBCSS
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCccc------------------------ccCC-ccCEEECcCCCCCc
Confidence 666665555556666666666666666542 22222 3333 55555555555553
Q ss_pred cchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccc
Q 037427 580 NIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTT 659 (829)
Q Consensus 580 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (829)
+|..+. ++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+.
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~---------------------- 241 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP---------------------- 241 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT----------------------
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC----------------------
Confidence 333222 4666666666666655556666677777777777776655554444333
Q ss_pred eecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCcccccccc--
Q 037427 660 YFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNL-- 737 (829)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-- 737 (829)
+|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|...
T Consensus 242 -------------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 242 -------------------------------TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289 (332)
T ss_dssp -------------------------------TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred -------------------------------CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence 6667777777777 667777777777788888777776666666543
Q ss_pred ----ccCCeeecCCCcCc--ccCCcccccCCCCcEEeccCCc
Q 037427 738 ----NQVESLDVSHNNLN--GKIPPQLVELNALVVFSVAHNN 773 (829)
Q Consensus 738 ----~~L~~LdLs~N~l~--~~ip~~l~~l~~L~~L~ls~N~ 773 (829)
.+|+.|++++|++. +..|..+..++.|+.+++++|+
T Consensus 290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 56778888888776 5666777778888888887774
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.8e-30 Score=276.52 Aligned_cols=266 Identities=19% Similarity=0.285 Sum_probs=208.9
Q ss_pred CCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCC
Q 037427 446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLS 525 (829)
Q Consensus 446 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 525 (829)
+++.++++++.++ .+|..+. ++|++|++++|.+++..|..+.++++|++|++++|++++..|..|..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4555666666555 3444332 466777777777665556667777777777777777776666677777777777777
Q ss_pred CCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCC--cchhhhhcCCCCCEEEccCCcccc
Q 037427 526 ENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG--NIPYWIERLIRLRYLILANNNLEG 603 (829)
Q Consensus 526 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~ 603 (829)
+|.++ .+|.... ++|++|++++|++.+ ++...|..+++|++|++++|.++. ..+..+..+ +|++|++++|++++
T Consensus 111 ~n~l~-~l~~~~~-~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP-SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC-TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc-ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 77776 3443333 678888888888754 444458899999999999999963 677788888 99999999999984
Q ss_pred cCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceee
Q 037427 604 EVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFS 683 (829)
Q Consensus 604 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (829)
+|..+. ++|++|++++|++++..|..+..+.
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~---------------------------------------------- 217 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYS---------------------------------------------- 217 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCT----------------------------------------------
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCC----------------------------------------------
Confidence 666554 7999999999999987776666544
Q ss_pred ecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccC--
Q 037427 684 YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVEL-- 761 (829)
Q Consensus 684 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l-- 761 (829)
+|+.|++++|++++..|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..+...
T Consensus 218 -------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 218 -------KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289 (332)
T ss_dssp -------TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred -------CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence 8899999999999888889999999999999999999 788899999999999999999998777766553
Q ss_pred ----CCCcEEeccCCcce
Q 037427 762 ----NALVVFSVAHNNLS 775 (829)
Q Consensus 762 ----~~L~~L~ls~N~l~ 775 (829)
..|+.+++++|++.
T Consensus 290 ~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CSSSCCBSEEECCSSSSC
T ss_pred ccccccccceEeecCccc
Confidence 67899999999987
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6e-30 Score=273.75 Aligned_cols=268 Identities=18% Similarity=0.281 Sum_probs=208.9
Q ss_pred CCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCC
Q 037427 446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLS 525 (829)
Q Consensus 446 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 525 (829)
+++.++++++.++ .+|..+. +.|++|++++|++++..+..+.++++|++|++++|++++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4555555555555 3444332 466667777776665555566667777777777777766666667777777777777
Q ss_pred CCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCC--cchhhhhcCCCCCEEEccCCcccc
Q 037427 526 ENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSG--NIPYWIERLIRLRYLILANNNLEG 603 (829)
Q Consensus 526 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~ 603 (829)
+|.++ .+|.... ++|++|++++|.+.+ ++...+..+++|++|++++|.+.. ..+..+.++++|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~-~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP-KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCS-BCCSSCC-TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCC-ccChhhc-ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 77776 3443332 678888888888754 444448899999999999999964 67788999999999999999998
Q ss_pred cCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceee
Q 037427 604 EVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFS 683 (829)
Q Consensus 604 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (829)
.+|..+. ++|++|++++|++++..|..+..+.
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------------------------- 216 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLN---------------------------------------------- 216 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCT----------------------------------------------
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCCC----------------------------------------------
Confidence 5665553 8999999999999987776665544
Q ss_pred ecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCccccc---
Q 037427 684 YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVE--- 760 (829)
Q Consensus 684 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~--- 760 (829)
+|+.|++++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 217 -------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 217 -------NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288 (330)
T ss_dssp -------TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred -------CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence 8999999999999888889999999999999999999 78889999999999999999999877766653
Q ss_pred ---CCCCcEEeccCCccee
Q 037427 761 ---LNALVVFSVAHNNLSA 776 (829)
Q Consensus 761 ---l~~L~~L~ls~N~l~g 776 (829)
...++.+++++|++..
T Consensus 289 ~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CTTSCCCSEEECCSSSSCG
T ss_pred ccccccccceEeecCcccc
Confidence 3788999999999874
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.7e-33 Score=314.91 Aligned_cols=355 Identities=17% Similarity=0.115 Sum_probs=217.5
Q ss_pred cChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCC----CCCEEEccCCcCcC----CCCCCCCCCCCCCEEEccCCcccc
Q 037427 331 FPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNP----NLSTLVLRNNSLSG----PFQTPIQPHWHLDALHVSKNFFQG 402 (829)
Q Consensus 331 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~----~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~ls~n~l~~ 402 (829)
++..+..+++|++|++++|.+.+..+..++..++ +|++|++++|.++. .++..+..+++|++|++++|.+++
T Consensus 48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 4566777888899999988887655555555566 68888888888774 335566777788888888887765
Q ss_pred cCchhhhhccccccccCCCcccEEEcccccccccC----ccccccccCCcEEecccccCCCccCccCC-----CCCCCcE
Q 037427 403 NIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQL----FSKKNYLRKLARLHLDANYFTGEIPKSLS-----NCSRLEG 473 (829)
Q Consensus 403 ~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~ 473 (829)
..+..+...+. ...++|++|++++|.+++.. +..+..+++|++|++++|.+++..+..+. ..++|++
T Consensus 128 ~~~~~l~~~l~----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~ 203 (461)
T 1z7x_W 128 AGLQLLCEGLL----DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203 (461)
T ss_dssp HHHHHHHHHHT----STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCE
T ss_pred HHHHHHHHHHh----cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceE
Confidence 44444333211 12346777777777766533 33444456666666666665543222222 1345666
Q ss_pred EECCCCcCCCC----cccccCCCCCCCEEEccCCcccCCChh-----hhhCCCCCCEEeCCCCcCcccCCCCCCCCcccE
Q 037427 474 LYMSDNNLYGN----IPARLGNLSSLNDIMMASNHLQGPIPL-----EFCQLNYLEILDLSENNISGSLPSCSSHSTIQQ 544 (829)
Q Consensus 474 L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 544 (829)
|++++|.+++. ++..+..+++|++|++++|.+.+.... .+..+++|++|++++|.++....
T Consensus 204 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~---------- 273 (461)
T 1z7x_W 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC---------- 273 (461)
T ss_dssp EECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH----------
T ss_pred EEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH----------
Confidence 66666665542 344444555555555555555432211 11134455555555554432100
Q ss_pred EEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhc-----CCCCCEEEccCCccccc----CCcccCCCCCC
Q 037427 545 VHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIER-----LIRLRYLILANNNLEGE----VPNQLCGLKQL 615 (829)
Q Consensus 545 L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~~----~~~~l~~l~~L 615 (829)
..++.. +..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++. ++..+..+++|
T Consensus 274 ---------~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 274 ---------GDLCRV-LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343 (461)
T ss_dssp ---------HHHHHH-HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred ---------HHHHHH-HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence 002332 556778888888888876655544443 26888888888888754 45666777888
Q ss_pred CEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceE
Q 037427 616 RLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGV 695 (829)
Q Consensus 616 ~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 695 (829)
++|++++|++++..+..+...- ....++|+.|
T Consensus 344 ~~L~Ls~n~i~~~~~~~l~~~l------------------------------------------------~~~~~~L~~L 375 (461)
T 1z7x_W 344 LELQISNNRLEDAGVRELCQGL------------------------------------------------GQPGSVLRVL 375 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHH------------------------------------------------TSTTCCCCEE
T ss_pred cEEEccCCccccccHHHHHHHH------------------------------------------------cCCCCceEEE
Confidence 8888888888654333222100 0013478899
Q ss_pred EcCCCcCCC----CCCcccccCCCCCEEECCCCCCCCCcccccc-----ccccCCeeecCCCcCcccCCcc
Q 037427 696 DLSCNKLTG----EIPPQIGKLTNIRALNFSHNNLTGVIPVSFS-----NLNQVESLDVSHNNLNGKIPPQ 757 (829)
Q Consensus 696 ~Ls~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~LdLs~N~l~~~ip~~ 757 (829)
++++|++++ .+|..+..+++|++|++++|++++.....+. ...+|+.|++.++.+....++.
T Consensus 376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence 999999986 7888899999999999999999865322222 1245777777777666444433
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=2.4e-30 Score=275.50 Aligned_cols=273 Identities=16% Similarity=0.229 Sum_probs=156.9
Q ss_pred CChHHHHHHHHHhhhcCC-CCCCCCCCCCC-CCCCCCCccccceEecC--------CCCcEEEEEcCCCccccccccccc
Q 037427 20 GCLEQERSALLRLKHDFF-NDPFNLENWVD-DENHSDCCKWEGVECNT--------STGRVKALYLSSKRQFLYSTAGQL 89 (829)
Q Consensus 20 ~~~~~~~~~ll~~k~~~~-~~~~~l~~w~~-~~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~~~~~~~~~~~ 89 (829)
++..+|++||++||+++. +....+.+|.. .....++|.|.|+.|+. ...+|+.|+|++
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~------------ 90 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS------------ 90 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES------------
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC------------
Confidence 456789999999999885 44344677830 01356899999999963 123455555554
Q ss_pred CcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCcc
Q 037427 90 NASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVK 169 (829)
Q Consensus 90 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~ 169 (829)
|.+... |.. +.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|
T Consensus 91 ------------------n~l~~l-p~~----l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp-- 143 (328)
T 4fcg_A 91 ------------------VPLPQF-PDQ----AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALP-- 143 (328)
T ss_dssp ------------------SCCSSC-CSC----GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCC--
T ss_pred ------------------CCchhc-Chh----hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCc--
Confidence 444422 221 344555555555555554 44444555555555555555554 334
Q ss_pred ccccCCCCCCEEecCCCCCCchhhHhhh---------cCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCc
Q 037427 170 ETLDNFTNLEDLTLDYSSLHISILKSIA---------AFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLR 240 (829)
Q Consensus 170 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~---------~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 240 (829)
..++++++|++|++++|.+.+.+|..+. ++++|++|++++|.++ .+|. .++++++|++|++++|.++
T Consensus 144 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~---~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA---SIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG---GGGGCTTCCEEEEESSCCC
T ss_pred HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchH---hhcCCCCCCEEEccCCCCC
Confidence 3455555555555555544444444433 2666666666666665 4444 4556666666666666665
Q ss_pred cccCCccCcccccccCCCCCCCCCCCCEEEcccccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEE
Q 037427 241 GTLPCLYLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESV 320 (829)
Q Consensus 241 g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L 320 (829)
+ +| ..+..+++|++|++++|.+.+.++. .+..++ +|++|
T Consensus 220 ~-l~-------------~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~--------------------------~L~~L 258 (328)
T 4fcg_A 220 A-LG-------------PAIHHLPKLEELDLRGCTALRNYPP-IFGGRA--------------------------PLKRL 258 (328)
T ss_dssp C-CC-------------GGGGGCTTCCEEECTTCTTCCBCCC-CTTCCC--------------------------CCCEE
T ss_pred c-Cc-------------hhhccCCCCCEEECcCCcchhhhHH-HhcCCC--------------------------CCCEE
Confidence 3 22 1125566666666666665544432 122222 33444
Q ss_pred EccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCc
Q 037427 321 SLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLS 377 (829)
Q Consensus 321 ~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 377 (829)
++++|.+.+.+|.++..+++|++|++++|.+.+.+|.+ ++++++|+.+++..+.+.
T Consensus 259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~-l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG-GGGSCTTCEEECCGGGSC
T ss_pred ECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH-HhhccCceEEeCCHHHHH
Confidence 44444445556666777777777777777777777776 567777777777766544
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=5.8e-28 Score=268.98 Aligned_cols=248 Identities=24% Similarity=0.305 Sum_probs=178.3
Q ss_pred CcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCC
Q 037427 447 LARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSE 526 (829)
Q Consensus 447 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 526 (829)
.+.++.++..++ .+|..+. ++++.|++++|++++..+..|.++++|++|++++|++.+..+..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 445666666666 4555443 5677777777777766666777777777777777777766666777777777777777
Q ss_pred CcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCC-cccccC
Q 037427 527 NNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN-NLEGEV 605 (829)
Q Consensus 527 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~ 605 (829)
|++++.. ...|..+++|++|++++|++....+..+..+++|++|++++| .+....
T Consensus 122 n~l~~~~------------------------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 122 NRLTTIP------------------------NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp SCCSSCC------------------------TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCeeC------------------------HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 7666322 222556666666777777666555566667777777777764 344333
Q ss_pred CcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeec
Q 037427 606 PNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYK 685 (829)
Q Consensus 606 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (829)
+..|.++++|++|++++|+++ .+|. +.
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~-~~~~-~~--------------------------------------------------- 204 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLR-EIPN-LT--------------------------------------------------- 204 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCS-SCCC-CT---------------------------------------------------
T ss_pred cchhhcccccCeecCCCCcCc-cccc-cC---------------------------------------------------
Confidence 446777778888888888776 2332 11
Q ss_pred CCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCc
Q 037427 686 GKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALV 765 (829)
Q Consensus 686 ~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~ 765 (829)
.+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+
T Consensus 205 --~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 205 --PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp --TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred --CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 233788888888888888888888889999999999999988888888889999999999999877777788888999
Q ss_pred EEeccCCccee
Q 037427 766 VFSVAHNNLSA 776 (829)
Q Consensus 766 ~L~ls~N~l~g 776 (829)
.|++++|++..
T Consensus 283 ~L~L~~Np~~C 293 (440)
T 3zyj_A 283 RIHLHHNPWNC 293 (440)
T ss_dssp EEECCSSCEEC
T ss_pred EEEcCCCCccC
Confidence 99999888763
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.1e-28 Score=258.76 Aligned_cols=258 Identities=17% Similarity=0.199 Sum_probs=148.4
Q ss_pred CCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCC--ChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEc
Q 037427 470 RLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGP--IPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHL 547 (829)
Q Consensus 470 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L 547 (829)
+|++|++++|+++...+..+.++++|++|++++|+++.. .+..+..+++|++|++++|.+.+..+....+++|++|++
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence 444444444444422222344444444444444444321 133344445555555555544421111113444444444
Q ss_pred cCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccc-cCCcccCCCCCCCEEECcCCcCc
Q 037427 548 SKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG-EVPNQLCGLKQLRLIDLSNNNLF 626 (829)
Q Consensus 548 ~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~ 626 (829)
++|++.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|+++
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence 44444333322236667777777777777777777777777777777777777765 46677777777777777777777
Q ss_pred cCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCC
Q 037427 627 GQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEI 706 (829)
Q Consensus 627 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~i 706 (829)
+..|..+..+. +|+.|++++|++++..
T Consensus 189 ~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 189 QLSPTAFNSLS-----------------------------------------------------SLQVLNMSHNNFFSLD 215 (306)
T ss_dssp EECTTTTTTCT-----------------------------------------------------TCCEEECTTSCCSBCC
T ss_pred CcCHHHhcCCC-----------------------------------------------------CCCEEECCCCccCccC
Confidence 65555554433 6677777777777666
Q ss_pred CcccccCCCCCEEECCCCCCCCCccccccccc-cCCeeecCCCcCcccCC--cccccCCCCcEEeccCCcceeecCC
Q 037427 707 PPQIGKLTNIRALNFSHNNLTGVIPVSFSNLN-QVESLDVSHNNLNGKIP--PQLVELNALVVFSVAHNNLSAAERN 780 (829)
Q Consensus 707 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~LdLs~N~l~~~ip--~~l~~l~~L~~L~ls~N~l~g~ip~ 780 (829)
+..+..+++|++|+|++|++++..|..+..++ +|+.|+|++|++++..+ ....-+...+.+.+..+++.+..|.
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 66677777777777777777777777777763 77777777777765322 1112222334445555666665554
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=266.31 Aligned_cols=281 Identities=17% Similarity=0.155 Sum_probs=182.6
Q ss_pred CcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEc
Q 037427 421 FNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMM 500 (829)
Q Consensus 421 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 500 (829)
+.....+.+++.++.. |..+ .++|++|++++|.+++..+..+.++++|++|++++|++++..|..+.++++|++|++
T Consensus 31 ~~~~~c~~~~~~l~~i-P~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 31 DRNGICKGSSGSLNSI-PSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CTTSEEECCSTTCSSC-CTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCeEeeCCCCCcccc-cccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 3344456666666533 3322 246777777777777555556777777777777777777666667777777777777
Q ss_pred cCCcccCCChhhhhCCCCCCEEeCCCCcCcccCC-CCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCC
Q 037427 501 ASNHLQGPIPLEFCQLNYLEILDLSENNISGSLP-SCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFS 578 (829)
Q Consensus 501 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~ 578 (829)
++|++++..+..+..+++|++|++++|++++..+ ..+ .+++|++|++++|...+.++...+..+++|++|++++|+++
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 7777776655567777777788887777774333 233 66777777777774334444444777788888888888887
Q ss_pred CcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCcc
Q 037427 579 GNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRT 658 (829)
Q Consensus 579 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (829)
+..|..+..+++|++|++++|++....+..+..+++|+.|++++|++++..+..+....
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~--------------------- 246 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE--------------------- 246 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccc---------------------
Confidence 77777788888888888888877643333344577788888888887754443322111
Q ss_pred ceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCC----CCCcccccCCCCCEEECCCCCCCCCcccc-
Q 037427 659 TYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG----EIPPQIGKLTNIRALNFSHNNLTGVIPVS- 733 (829)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~- 733 (829)
....++.++++++.+++ .+|..+..+++|++|+|++|+++ .+|..
T Consensus 247 -----------------------------~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~ 296 (353)
T 2z80_A 247 -----------------------------TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI 296 (353)
T ss_dssp -----------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT
T ss_pred -----------------------------ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH
Confidence 11245556666666554 35666777777777777777777 34444
Q ss_pred ccccccCCeeecCCCcCcccCC
Q 037427 734 FSNLNQVESLDVSHNNLNGKIP 755 (829)
Q Consensus 734 l~~l~~L~~LdLs~N~l~~~ip 755 (829)
|+.+++|++|+|++|++++..|
T Consensus 297 ~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 297 FDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTTCTTCCEEECCSSCBCCCHH
T ss_pred HhcCCCCCEEEeeCCCccCcCC
Confidence 4677777777777777776544
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=7.9e-28 Score=254.41 Aligned_cols=249 Identities=21% Similarity=0.283 Sum_probs=218.1
Q ss_pred cEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCccc--CCC-CCCCCcccEEEcc
Q 037427 472 EGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGS--LPS-CSSHSTIQQVHLS 548 (829)
Q Consensus 472 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~-~~~~~~L~~L~L~ 548 (829)
+.++.+++.++ .+|..+. ++|++|++++|+++...+..|..+++|++|++++|.++.. .+. ...+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 57888888887 5665443 6899999999999976666789999999999999999743 133 2378999999999
Q ss_pred CCcccCcCCccccCCCCCccEEEccCCcCCCcch-hhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCcc
Q 037427 549 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFG 627 (829)
Q Consensus 549 ~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 627 (829)
+|.+. .++.. +..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 87 ~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 99996 45655 8899999999999999997665 678999999999999999998889999999999999999999986
Q ss_pred -CCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCC
Q 037427 628 -QIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEI 706 (829)
Q Consensus 628 -~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~i 706 (829)
.+|..+..+. +|++|++++|++++..
T Consensus 165 ~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~n~l~~~~ 191 (306)
T 2z66_A 165 NFLPDIFTELR-----------------------------------------------------NLTFLDLSQCQLEQLS 191 (306)
T ss_dssp GEECSCCTTCT-----------------------------------------------------TCCEEECTTSCCCEEC
T ss_pred ccchhHHhhCc-----------------------------------------------------CCCEEECCCCCcCCcC
Confidence 4666555543 8999999999999888
Q ss_pred CcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCC-CCcEEeccCCcceeec
Q 037427 707 PPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELN-ALVVFSVAHNNLSAAE 778 (829)
Q Consensus 707 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~i 778 (829)
|..+..+++|++|+|++|++++..+..+..+++|+.|||++|++++..|..+..++ +|++|++++|++++..
T Consensus 192 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 99999999999999999999988888999999999999999999999999999984 9999999999999753
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.7e-28 Score=265.05 Aligned_cols=279 Identities=17% Similarity=0.164 Sum_probs=235.5
Q ss_pred cccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEE
Q 037427 443 YLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEIL 522 (829)
Q Consensus 443 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 522 (829)
.++.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|++++..+..|..+++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3556667899999998 5676554 589999999999997767789999999999999999998888899999999999
Q ss_pred eCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCc-cccCCCCCccEEEccCC-cCCCcchhhhhcCCCCCEEEccCC
Q 037427 523 DLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKY-GTFFNRSSIVTLDLSYN-SFSGNIPYWIERLIRLRYLILANN 599 (829)
Q Consensus 523 ~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~n 599 (829)
++++|++++..+..+ .+++|++|++++|++. .++. ..+..+++|++|++++| .+.+..+..+.++++|++|++++|
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 999999996544434 7899999999999996 4555 55899999999999999 477667788999999999999999
Q ss_pred cccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeeccc
Q 037427 600 NLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKE 679 (829)
Q Consensus 600 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (829)
++++..|..+..+++|++|++++|+++. +|..+.
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~--------------------------------------------- 218 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFV--------------------------------------------- 218 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHH---------------------------------------------
T ss_pred CcCccCHHHHhccccCCeecCCCCcccc-chhhhh---------------------------------------------
Confidence 9998889999999999999999999853 222111
Q ss_pred ceeeecCCCCCCcceEEcCCCcCCCCCCcccc---cCCCCCEEECCCCCCCC----CccccccccccCCeeecCCCcCcc
Q 037427 680 ISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIG---KLTNIRALNFSHNNLTG----VIPVSFSNLNQVESLDVSHNNLNG 752 (829)
Q Consensus 680 ~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~LdLs~N~l~~ 752 (829)
..+++|+.|++++|++++..+..+. ....++.++|+++.+++ .+|+.+..+++|+.|||++|+++
T Consensus 219 -------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 219 -------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290 (353)
T ss_dssp -------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred -------hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence 1134899999999999987665543 46778999999999987 37888999999999999999999
Q ss_pred cCCcc-cccCCCCcEEeccCCcceeecC
Q 037427 753 KIPPQ-LVELNALVVFSVAHNNLSAAER 779 (829)
Q Consensus 753 ~ip~~-l~~l~~L~~L~ls~N~l~g~ip 779 (829)
.+|.. +..+++|++|++++|++++..|
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 56665 5899999999999999998876
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=6.8e-30 Score=296.87 Aligned_cols=460 Identities=15% Similarity=0.135 Sum_probs=215.6
Q ss_pred CCccccceEecCCCCcEEEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCC---CcCCCc-------cccc-c
Q 037427 54 DCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIA---GFVENG-------GLER-L 122 (829)
Q Consensus 54 ~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~~~~-------~~~~-l 122 (829)
-|++|.++.+.. . ..+.+.+... ......+..+++|++|+++++... +.++.. .+.. .
T Consensus 40 vck~W~~~~~~~--~--~~l~~~~~~~-------~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 108 (592)
T 3ogk_B 40 VCRRWFKIDSET--R--EHVTMALCYT-------ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEIS 108 (592)
T ss_dssp SCHHHHHHHHHH--C--CEEEESCGGG-------SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHH
T ss_pred HhHHHHHhhhcc--c--cEEEEeeccc-------cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHH
Confidence 456899985432 1 2233332210 112345677889999999876431 122211 0000 1
Q ss_pred CCCCCCCEEECCCCCCCccchhhhcCC--CCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCch----hhHhh
Q 037427 123 SGLSKLKLLNLGRNLFNNSIFSSLAGL--SSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHIS----ILKSI 196 (829)
Q Consensus 123 ~~l~~L~~L~Ls~n~l~~~~~~~l~~L--~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l 196 (829)
..+++|++|+|++|.+++..+..++.. .+|++|+|++|.-...........++++|++|+|++|.+++. ++..+
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 156677777777776666555555553 337777776665110000112233566666666666665443 33444
Q ss_pred hcCCCCCEEEcccccCcc----ccCCCccccCCCCCCcEEECCCccCccccCCccCcccccccCCCCCCCCCCCCEEEcc
Q 037427 197 AAFTSLKRLSIQNGRVDG----ALGDDEEGLCRLGHLQELHMGGNDLRGTLPCLYLNQLTGNISSSPLIHLTSIERLFLS 272 (829)
Q Consensus 197 ~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p~l~~~~~~g~i~~~~l~~l~~L~~L~Ls 272 (829)
..+++|++|++++|.+++ .++. .+.++++|++|++++|.+.+ +| ..+..+++|++|+++
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~---~~~~~~~L~~L~L~~~~~~~-l~-------------~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLET---IARNCRSLVSVKVGDFEILE-LV-------------GFFKAAANLEEFCGG 251 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHH---HHHHCTTCCEEECSSCBGGG-GH-------------HHHHHCTTCCEEEEC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHH---HHhhCCCCcEEeccCccHHH-HH-------------HHHhhhhHHHhhccc
Confidence 556666666666666542 1111 23345566666666555543 22 111445555555554
Q ss_pred cccCccccCchhhcCCCCCceeeccccceeeccCCCCCCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCC
Q 037427 273 YNQFQIPFSLEPFFNLSKLKVFSGEFNEIYVEPESSHSTTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLK 352 (829)
Q Consensus 273 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 352 (829)
..... .+. ...........+|+.++++++. ...+|..+..+++|++|++++|.+.
T Consensus 252 ~~~~~--~~~----------------------~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 252 SLNED--IGM----------------------PEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp BCCCC--TTC----------------------TTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCC
T ss_pred ccccc--cch----------------------HHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCC
Confidence 32111 000 0001111222355556665532 2445666667777777777777765
Q ss_pred CCCchHHhhcCCCCCEEEccCCcCcC-CCCCCCCCCCCCCEEEccC-----------CcccccCchhhhhccccccccCC
Q 037427 353 GEFPNWLLKNNPNLSTLVLRNNSLSG-PFQTPIQPHWHLDALHVSK-----------NFFQGNIPLEIGVYFPSHLAMGC 420 (829)
Q Consensus 353 ~~~p~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ls~-----------n~l~~~ip~~~~~~l~~~~~~~~ 420 (829)
+.....++..+++|++|+++ +.+.+ .++.....+++|++|++++ +.+++.....+. .+|
T Consensus 307 ~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~--------~~~ 377 (592)
T 3ogk_B 307 TEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA--------QGC 377 (592)
T ss_dssp HHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH--------HHC
T ss_pred HHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH--------hhC
Confidence 44443345667777777776 33321 1111122345566666652 333322111111 124
Q ss_pred CcccEEEcccccccccCcccccc-ccCCcEEecc----cccCCCc-----cCccCCCCCCCcEEECCCCc--CCCCcccc
Q 037427 421 FNLEYLVLSENSLHGQLFSKKNY-LRKLARLHLD----ANYFTGE-----IPKSLSNCSRLEGLYMSDNN--LYGNIPAR 488 (829)
Q Consensus 421 ~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~p~~ 488 (829)
++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+.++++|++|++++|. +++..+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 45566666555555544444433 5555555554 3344431 12223344555555554322 33322222
Q ss_pred cC-CCCCCCEEEccCCcccCC-ChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCC
Q 037427 489 LG-NLSSLNDIMMASNHLQGP-IPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSS 566 (829)
Q Consensus 489 l~-~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~ 566 (829)
+. .+++|++|++++|++++. ++..+..+++|++|++++|.++ +......+..+++
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-----------------------~~~~~~~~~~l~~ 514 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS-----------------------ERAIAAAVTKLPS 514 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB-----------------------HHHHHHHHHHCSS
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc-----------------------HHHHHHHHHhcCc
Confidence 22 244455555555544431 2222334444444444444433 2211111334566
Q ss_pred ccEEEccCCcCCCcchhhhh-cCCCCCEEEccC
Q 037427 567 IVTLDLSYNSFSGNIPYWIE-RLIRLRYLILAN 598 (829)
Q Consensus 567 L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~ 598 (829)
|++|++++|++++.....+. .++.+....+..
T Consensus 515 L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 515 LRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp CCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred cCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 66666666666554333332 345555554443
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=6.8e-30 Score=296.85 Aligned_cols=398 Identities=13% Similarity=0.057 Sum_probs=243.1
Q ss_pred cCccEEEccCCCCCCCcChhhhC-CC-CcCEEEcCCCC-CCCCCchHHhhcCCCCCEEEccCCcCcCCC----CCCCCCC
Q 037427 315 FQLESVSLSGSDIHATFPKFLYN-QH-DLELVDFSDSN-LKGEFPNWLLKNNPNLSTLVLRNNSLSGPF----QTPIQPH 387 (829)
Q Consensus 315 ~~L~~L~Ls~~~l~~~~p~~l~~-~~-~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l 387 (829)
++|++|+|++|.+++..+.++.. ++ +|++|++++|. +.......+...+++|++|+|++|.+++.. +.....+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 35666666666555555555544 23 37777777665 211111122345677777777777665431 1122345
Q ss_pred CCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCC---CccCcc
Q 037427 388 WHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFT---GEIPKS 464 (829)
Q Consensus 388 ~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~ 464 (829)
++|++|+++.|.+++.-+..+... +..+++|++|++++|.+.+ ++..+..+++|++|+++..... +..+..
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~-----~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETI-----ARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHH-----HHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred CCccEEEeeccCCCccCHHHHHHH-----HhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 677777777777653222222211 1135677888888777765 4566777778888887753322 233345
Q ss_pred CCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCCh-hhhhCCCCCCEEeCCCCcCc-ccCCCCC-CCCc
Q 037427 465 LSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIP-LEFCQLNYLEILDLSENNIS-GSLPSCS-SHST 541 (829)
Q Consensus 465 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~-~~~~~~~-~~~~ 541 (829)
+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+. +.++... .+++
T Consensus 266 l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTT
T ss_pred hhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCC
Confidence 66777788888777543 3566667777788888888877654333 335677888888887 3333 2222222 4667
Q ss_pred ccEEEccC-----------CcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhc-CCCCCEEEcc----CCccccc-
Q 037427 542 IQQVHLSK-----------NMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIER-LIRLRYLILA----NNNLEGE- 604 (829)
Q Consensus 542 L~~L~L~~-----------n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~- 604 (829)
|++|++++ +.+++.........+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 78888873 34432211111345788888888888888777777765 8888888886 5666643
Q ss_pred ----CCcccCCCCCCCEEECcCCc--CccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecc
Q 037427 605 ----VPNQLCGLKQLRLIDLSNNN--LFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTK 678 (829)
Q Consensus 605 ----~~~~l~~l~~L~~L~Ls~N~--l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (829)
++..+.++++|+.|++++|. +++..+..+.
T Consensus 424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~-------------------------------------------- 459 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG-------------------------------------------- 459 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH--------------------------------------------
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH--------------------------------------------
Confidence 33345668888888887543 4332221111
Q ss_pred cceeeecCCCCCCcceEEcCCCcCCC-CCCcccccCCCCCEEECCCCCCCCC-ccccccccccCCeeecCCCcCcccCCc
Q 037427 679 EISFSYKGKPLNKMYGVDLSCNKLTG-EIPPQIGKLTNIRALNFSHNNLTGV-IPVSFSNLNQVESLDVSHNNLNGKIPP 756 (829)
Q Consensus 679 ~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~LdLs~N~l~~~ip~ 756 (829)
..+++|+.|++++|++++ .++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|++++....
T Consensus 460 --------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~ 531 (592)
T 3ogk_B 460 --------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQD 531 (592)
T ss_dssp --------HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTT
T ss_pred --------HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHH
Confidence 123478889999988876 3455567888899999999988755 344456788899999999998865433
Q ss_pred cc-ccCCCCcEEeccCC
Q 037427 757 QL-VELNALVVFSVAHN 772 (829)
Q Consensus 757 ~l-~~l~~L~~L~ls~N 772 (829)
.+ ..++.+.+..+..+
T Consensus 532 ~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 532 LMQMARPYWNIELIPSR 548 (592)
T ss_dssp GGGGCCTTEEEEEECCC
T ss_pred HHHHhCCCcEEEEecCc
Confidence 33 34566655555443
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3.7e-27 Score=250.90 Aligned_cols=234 Identities=18% Similarity=0.222 Sum_probs=158.7
Q ss_pred ccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEe
Q 037427 444 LRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILD 523 (829)
Q Consensus 444 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 523 (829)
.++++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467889999999988 67777888889999999999888 78888888889999999998888 6788888888888888
Q ss_pred CCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccc
Q 037427 524 LSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG 603 (829)
Q Consensus 524 Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 603 (829)
+++|++.+.+|..+.. . .++. .+.++++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 157 L~~n~~~~~~p~~~~~-----~---------~~~~-~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~- 219 (328)
T 4fcg_A 157 IRACPELTELPEPLAS-----T---------DASG-EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS- 219 (328)
T ss_dssp EEEETTCCCCCSCSEE-----E---------C-CC-CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred CCCCCCccccChhHhh-----c---------cchh-hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-
Confidence 8888877776654310 0 0111 1455677777777777776 56666777777777777777776
Q ss_pred cCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceee
Q 037427 604 EVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFS 683 (829)
Q Consensus 604 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (829)
.+|..+..+++|++|++++|++.+.+|..++.+.
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~---------------------------------------------- 253 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA---------------------------------------------- 253 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC----------------------------------------------
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCC----------------------------------------------
Confidence 3455566666666666666666655555444332
Q ss_pred ecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcC
Q 037427 684 YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNL 750 (829)
Q Consensus 684 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l 750 (829)
+|+.|++++|.+.+.+|..++.+++|++|+|++|++.+.+|+.++++++|+.+++..|.+
T Consensus 254 -------~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 254 -------PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp -------CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred -------CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 455555555555555555555555555555555555555555555555555555554444
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.1e-28 Score=261.97 Aligned_cols=269 Identities=20% Similarity=0.239 Sum_probs=190.2
Q ss_pred cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA 501 (829)
Q Consensus 422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 501 (829)
+++..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 45556666666554444444455666666666666665555566666666666666666654333 5566666666666
Q ss_pred CCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcc
Q 037427 502 SNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI 581 (829)
Q Consensus 502 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 581 (829)
+|++++.. ..++|++|++++|+++ +..+ ..+++|++|++++|++++..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~-----------------------~~~~----~~~~~L~~L~l~~N~l~~~~ 136 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNIS-----------------------RVSC----SRGQGKKNIYLANNKITMLR 136 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCS-----------------------EEEE----CCCSSCEEEECCSSCCCSGG
T ss_pred CCcccccc-----CCCCcCEEECCCCccC-----------------------CcCc----cccCCCCEEECCCCCCCCcc
Confidence 66655321 2245555555555544 3221 23466888888888888777
Q ss_pred hhhhhcCCCCCEEEccCCcccccCCccc-CCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccce
Q 037427 582 PYWIERLIRLRYLILANNNLEGEVPNQL-CGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTY 660 (829)
Q Consensus 582 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (829)
+..+..+++|++|++++|++++..+..+ ..+++|++|++++|++++. |..
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~---------------------------- 187 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ---------------------------- 187 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC----------------------------
T ss_pred chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccc----------------------------
Confidence 7777778888888888888887666665 3678888888888888643 110
Q ss_pred ecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccC
Q 037427 661 FVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQV 740 (829)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 740 (829)
..+++|++|++++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|
T Consensus 188 --------------------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 188 --------------------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp --------------------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred --------------------------cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence 013478899999999995 5556999999999999999999 578889999999
Q ss_pred CeeecCCCcCc-ccCCcccccCCCCcEEeccC-CcceeecCCC
Q 037427 741 ESLDVSHNNLN-GKIPPQLVELNALVVFSVAH-NNLSAAERNP 781 (829)
Q Consensus 741 ~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls~-N~l~g~ip~~ 781 (829)
+.|++++|+++ +.+|..+..++.|+.+++++ +.++|..|..
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 99999999999 78889999999999999994 4788877754
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.3e-26 Score=256.94 Aligned_cols=247 Identities=21% Similarity=0.258 Sum_probs=153.5
Q ss_pred CcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCC
Q 037427 447 LARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSE 526 (829)
Q Consensus 447 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 526 (829)
...++.++..++ .+|..+. +++++|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456777777777 4565443 5788888888888877777778888888888888888777777777777777777777
Q ss_pred CcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCC-cccccC
Q 037427 527 NNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANN-NLEGEV 605 (829)
Q Consensus 527 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~ 605 (829)
|++++..+.. |..+++|++|++++|++.+..+..+..+++|++|++++| .+....
T Consensus 133 n~l~~~~~~~------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 133 NWLTVIPSGA------------------------FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp SCCSBCCTTT------------------------SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCccChhh------------------------hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 7776443332 444555555555555555444445555555555555552 333222
Q ss_pred CcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeec
Q 037427 606 PNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYK 685 (829)
Q Consensus 606 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (829)
+..+.++++|++|++++|++++. |. +.
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~-~~-~~--------------------------------------------------- 215 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKDM-PN-LT--------------------------------------------------- 215 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSSC-CC-CT---------------------------------------------------
T ss_pred hhhccCCCCCCEEECCCCccccc-cc-cc---------------------------------------------------
Confidence 33455566666666666655432 21 11
Q ss_pred CCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCc
Q 037427 686 GKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALV 765 (829)
Q Consensus 686 ~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~ 765 (829)
.+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|||++|++++..+..+..+++|+
T Consensus 216 --~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 216 --PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp --TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred --ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 122566666666666666666666666666666666666666666666666666666666666655555566666666
Q ss_pred EEeccCCcce
Q 037427 766 VFSVAHNNLS 775 (829)
Q Consensus 766 ~L~ls~N~l~ 775 (829)
.|++++|++.
T Consensus 294 ~L~L~~Np~~ 303 (452)
T 3zyi_A 294 ELHLHHNPWN 303 (452)
T ss_dssp EEECCSSCEE
T ss_pred EEEccCCCcC
Confidence 6666666653
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=9.3e-27 Score=243.37 Aligned_cols=235 Identities=20% Similarity=0.212 Sum_probs=130.7
Q ss_pred CCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCc-CcccCCCCCCCCcccEEEc
Q 037427 469 SRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENN-ISGSLPSCSSHSTIQQVHL 547 (829)
Q Consensus 469 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~L 547 (829)
++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|. +....|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~------------- 98 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP------------- 98 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT-------------
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH-------------
Confidence 355555555555554444445555555555555555554444555555555555555554 332212
Q ss_pred cCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCcc
Q 037427 548 SKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFG 627 (829)
Q Consensus 548 ~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 627 (829)
..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++
T Consensus 99 -----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 99 -----------ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp -----------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred -----------HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 124445555555555555555555555555566666666666554444455556666666666666554
Q ss_pred CCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCC
Q 037427 628 QIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP 707 (829)
Q Consensus 628 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip 707 (829)
..+..+..+. +|+.|++++|++++..|
T Consensus 168 ~~~~~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~ 194 (285)
T 1ozn_A 168 VPERAFRGLH-----------------------------------------------------SLDRLLLHQNRVAHVHP 194 (285)
T ss_dssp ECTTTTTTCT-----------------------------------------------------TCCEEECCSSCCCEECT
T ss_pred cCHHHhcCcc-----------------------------------------------------ccCEEECCCCcccccCH
Confidence 3333333322 56666666666666666
Q ss_pred cccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCC
Q 037427 708 PQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNP 781 (829)
Q Consensus 708 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 781 (829)
..+..+++|+.|++++|++++..+..+..+++|+.|++++|++....+.. .-...++.+..+.|.+.+..|..
T Consensus 195 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred hHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 66677777777777777777666666777777777777777776433321 11123444556666777666653
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.4e-26 Score=241.97 Aligned_cols=228 Identities=21% Similarity=0.227 Sum_probs=185.7
Q ss_pred cEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCc
Q 037427 472 EGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNM 551 (829)
Q Consensus 472 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~ 551 (829)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~-------------------- 70 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-------------------- 70 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE--------------------
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccce--------------------
Confidence 45666666665 344332 3466666666666665555556666666666666665543
Q ss_pred ccCcCCccccCCCCCccEEEccCCc-CCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCC
Q 037427 552 LYGPLKYGTFFNRSSIVTLDLSYNS-FSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIP 630 (829)
Q Consensus 552 l~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 630 (829)
..+.. |..+++|++|++++|+ +....|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 71 ---~~~~~-~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 71 ---IDAAA-FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp ---ECTTT-TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ---eCHhh-cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 22333 7888999999999997 887778899999999999999999998888999999999999999999987666
Q ss_pred CCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCccc
Q 037427 631 GCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI 710 (829)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l 710 (829)
..++.+. +|++|++++|++++..+..+
T Consensus 147 ~~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 147 DTFRDLG-----------------------------------------------------NLTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp TTTTTCT-----------------------------------------------------TCCEEECCSSCCCEECTTTT
T ss_pred hHhccCC-----------------------------------------------------CccEEECCCCcccccCHHHh
Confidence 5555443 89999999999997777789
Q ss_pred ccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecC
Q 037427 711 GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAER 779 (829)
Q Consensus 711 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 779 (829)
..+++|++|++++|++++..|..|..+++|+.|++++|++++..+..+..+++|++|++++|++.+..+
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 999999999999999999999999999999999999999998777889999999999999999987654
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.8e-28 Score=256.35 Aligned_cols=269 Identities=20% Similarity=0.153 Sum_probs=209.9
Q ss_pred CCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCC
Q 037427 389 HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNC 468 (829)
Q Consensus 389 ~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 468 (829)
+++..+++.+.+... +..+ +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ +..+
T Consensus 11 ~l~i~~ls~~~l~~~-~~~~--------~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l 79 (317)
T 3o53_A 11 RYKIEKVTDSSLKQA-LASL--------RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL 79 (317)
T ss_dssp EEEEESCCTTTHHHH-HHHH--------HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTC
T ss_pred ceeEeeccccchhhh-HHHH--------hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhc
Confidence 455566666665422 2121 2245789999999999999888899999999999999999986554 8899
Q ss_pred CCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEcc
Q 037427 469 SRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLS 548 (829)
Q Consensus 469 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~ 548 (829)
++|++|++++|++++.. ..++|++|++++|++++..+. .+++|++|++++|++++..+
T Consensus 80 ~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~-------------- 137 (317)
T 3o53_A 80 STLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD-------------- 137 (317)
T ss_dssp TTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG--------------
T ss_pred CCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc--------------
Confidence 99999999999998432 348999999999999866543 35667777777777663322
Q ss_pred CCcccCcCCccccCCCCCccEEEccCCcCCCcchhhh-hcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCcc
Q 037427 549 KNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWI-ERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFG 627 (829)
Q Consensus 549 ~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 627 (829)
..+..+++|++|++++|++++..+..+ ..+++|++|++++|++++. +. ...+++|++|++++|++++
T Consensus 138 ----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 138 ----------LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp ----------BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred ----------hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc
Confidence 226667888888888888887777666 4688999999999998854 32 3358899999999999985
Q ss_pred CCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCC
Q 037427 628 QIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP 707 (829)
Q Consensus 628 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip 707 (829)
..+ .+..+ ++|+.|++++|+++ .+|
T Consensus 206 l~~-~~~~l-----------------------------------------------------~~L~~L~L~~N~l~-~l~ 230 (317)
T 3o53_A 206 MGP-EFQSA-----------------------------------------------------AGVTWISLRNNKLV-LIE 230 (317)
T ss_dssp ECG-GGGGG-----------------------------------------------------TTCSEEECTTSCCC-EEC
T ss_pred chh-hhccc-----------------------------------------------------CcccEEECcCCccc-chh
Confidence 433 34333 37899999999999 678
Q ss_pred cccccCCCCCEEECCCCCCC-CCccccccccccCCeeecC-CCcCcccCCcc
Q 037427 708 PQIGKLTNIRALNFSHNNLT-GVIPVSFSNLNQVESLDVS-HNNLNGKIPPQ 757 (829)
Q Consensus 708 ~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~LdLs-~N~l~~~ip~~ 757 (829)
..+..+++|+.|++++|.++ +.+|..+..+++|+.|+++ .+.++|..|..
T Consensus 231 ~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 88999999999999999999 8889999999999999999 44577766644
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=5.5e-26 Score=253.95 Aligned_cols=208 Identities=18% Similarity=0.156 Sum_probs=158.0
Q ss_pred cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA 501 (829)
Q Consensus 422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 501 (829)
....++.++..++. +|..+ .+++++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 45788888888875 44443 3689999999999998888999999999999999999998888999999999999999
Q ss_pred CCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCc
Q 037427 502 SNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGN 580 (829)
Q Consensus 502 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 580 (829)
+|++++..+..|..+++|++|++++|++....+..+ .+++|++|++++|...+.++...|..+++|++|++++|++++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 999998888889999999999999999986555444 6677777777775555566655566667777777777766643
Q ss_pred chhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCcc
Q 037427 581 IPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLD 634 (829)
Q Consensus 581 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 634 (829)
| .+..+++|++|+|++|++++..|..|.++++|+.|++++|++++..|..+.
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 263 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD 263 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc
Confidence 3 255566666666666666665566666666666666666666554444433
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=6.5e-28 Score=255.34 Aligned_cols=81 Identities=27% Similarity=0.395 Sum_probs=49.4
Q ss_pred CcceEEcCCCcCCCCCC-cccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEec
Q 037427 691 KMYGVDLSCNKLTGEIP-PQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSV 769 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 769 (829)
+|+.|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|+.|||++|+|++. |. +..+++|++|++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 45555555555555443 33445566666666666666 5555555 6666666666666654 44 666666677777
Q ss_pred cCCccee
Q 037427 770 AHNNLSA 776 (829)
Q Consensus 770 s~N~l~g 776 (829)
++|++++
T Consensus 304 ~~N~l~~ 310 (312)
T 1wwl_A 304 KGNPFLD 310 (312)
T ss_dssp TTCTTTC
T ss_pred cCCCCCC
Confidence 7776664
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.4e-25 Score=249.74 Aligned_cols=186 Identities=22% Similarity=0.206 Sum_probs=88.7
Q ss_pred CCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCC
Q 037427 446 KLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLS 525 (829)
Q Consensus 446 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 525 (829)
+++.|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 44444444444444444444445555555555555444444444455555555555555544444444455555555555
Q ss_pred CCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCccccc
Q 037427 526 ENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE 604 (829)
Q Consensus 526 ~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 604 (829)
+|.+....+..+ .+++|++|++++|+..+.++...|.++++|++|++++|+++. +| .+..+++|++|+|++|++++.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCcc
Confidence 555443322222 334444444444333333444335555555555555555552 22 244455555555555555544
Q ss_pred CCcccCCCCCCCEEECcCCcCccCCCCCc
Q 037427 605 VPNQLCGLKQLRLIDLSNNNLFGQIPGCL 633 (829)
Q Consensus 605 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 633 (829)
.|..|.++++|+.|++++|++++..|..|
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 251 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAF 251 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSS
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhh
Confidence 45555555555555555555544444333
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6e-25 Score=251.42 Aligned_cols=80 Identities=28% Similarity=0.375 Sum_probs=38.2
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA 770 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 770 (829)
+|+.|++++|++++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|+++
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 34445555555542 33 23344555555555555 2332 3344555555555555 444445555555555555
Q ss_pred CCcceeecC
Q 037427 771 HNNLSAAER 779 (829)
Q Consensus 771 ~N~l~g~ip 779 (829)
+|+++|.+|
T Consensus 293 ~N~l~~~~~ 301 (622)
T 3g06_A 293 GNPLSERTL 301 (622)
T ss_dssp SCCCCHHHH
T ss_pred CCCCCCcCH
Confidence 555554444
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.5e-27 Score=249.68 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=37.5
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcc
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG 752 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 752 (829)
+|+.|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|+|++|++++
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5566666666666 5555554 6677777777777755 54 6677777777777777764
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3.5e-25 Score=253.31 Aligned_cols=269 Identities=24% Similarity=0.279 Sum_probs=163.5
Q ss_pred CCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCcccccc
Q 037427 364 PNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNY 443 (829)
Q Consensus 364 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 443 (829)
.++++|++++|.++. +|..+. ++|++|++++|.++ .+|. .+++|++|++++|.+++. |. .
T Consensus 40 ~~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~------------~l~~L~~L~Ls~N~l~~l-p~---~ 99 (622)
T 3g06_A 40 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA------------LPPELRTLEVSGNQLTSL-PV---L 99 (622)
T ss_dssp HCCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC------------CCTTCCEEEECSCCCSCC-CC---C
T ss_pred CCCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC------------cCCCCCEEEcCCCcCCcC-CC---C
Confidence 357888888888773 343333 56666666666665 2332 123555555555555432 22 3
Q ss_pred ccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEe
Q 037427 444 LRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILD 523 (829)
Q Consensus 444 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 523 (829)
+++|++|++++|.+++ +|. .+++|+.|++++|++++ +|.. +++|++|+
T Consensus 100 l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---------------------------l~~L~~L~ 147 (622)
T 3g06_A 100 PPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---------------------------PPGLQELS 147 (622)
T ss_dssp CTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---------------------------CTTCCEEE
T ss_pred CCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---------------------------CCCCCEEE
Confidence 4555555555555543 222 23445555555555442 2221 24455555
Q ss_pred CCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccc
Q 037427 524 LSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG 603 (829)
Q Consensus 524 Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 603 (829)
+++|++++ +|. .+++|+.|++++|.+.+ +| ..+++|+.|++++|++++ +|. .+++|+.|++++|.++
T Consensus 148 Ls~N~l~~-l~~--~~~~L~~L~L~~N~l~~-l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~- 214 (622)
T 3g06_A 148 VSDNQLAS-LPA--LPSELCKLWAYNNQLTS-LP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT- 214 (622)
T ss_dssp CCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-
T ss_pred CcCCcCCC-cCC--ccCCCCEEECCCCCCCC-Cc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-
Confidence 55555542 222 23455555565555533 33 234667777777777764 332 2367778888888777
Q ss_pred cCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceee
Q 037427 604 EVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFS 683 (829)
Q Consensus 604 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (829)
.+|.. +++|+.|++++|++++ +|.
T Consensus 215 ~l~~~---~~~L~~L~Ls~N~L~~-lp~---------------------------------------------------- 238 (622)
T 3g06_A 215 SLPAL---PSGLKELIVSGNRLTS-LPV---------------------------------------------------- 238 (622)
T ss_dssp SCCCC---CTTCCEEECCSSCCSC-CCC----------------------------------------------------
T ss_pred ccCCC---CCCCCEEEccCCccCc-CCC----------------------------------------------------
Confidence 44432 4678888888888764 331
Q ss_pred ecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCC
Q 037427 684 YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELN 762 (829)
Q Consensus 684 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 762 (829)
.+++|+.|++++|+++ .+|. .+++|+.|+|++|+|+ .+|..|.++++|+.|+|++|++++.+|..+..++
T Consensus 239 ----~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 239 ----LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp ----CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred ----CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 1226778888888888 5665 5678888888888888 6788888888888888888888888887776554
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-26 Score=260.91 Aligned_cols=234 Identities=20% Similarity=0.205 Sum_probs=159.7
Q ss_pred CCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccC
Q 037427 470 RLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSK 549 (829)
Q Consensus 470 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~ 549 (829)
+|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence 34444444444444333444444444444444444443332 4444444444444444443221 14555555555
Q ss_pred CcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccC-CCCCCCEEECcCCcCccC
Q 037427 550 NMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLC-GLKQLRLIDLSNNNLFGQ 628 (829)
Q Consensus 550 n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~N~l~~~ 628 (829)
|.+.+..+ ..+++|+.|++++|.+++..|..++.+++|++|++++|.+++.+|..+. .+++|+.|+|++|.+++.
T Consensus 109 N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 109 NNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 55544332 2346788888888888888787888888888888888888887777775 688888888888888754
Q ss_pred CCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCc
Q 037427 629 IPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP 708 (829)
Q Consensus 629 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~ 708 (829)
.+.. .+++|+.|+|++|++++. |.
T Consensus 185 ~~~~-------------------------------------------------------~l~~L~~L~Ls~N~l~~~-~~ 208 (487)
T 3oja_A 185 KGQV-------------------------------------------------------VFAKLKTLDLSSNKLAFM-GP 208 (487)
T ss_dssp ECCC-------------------------------------------------------CCTTCCEEECCSSCCCEE-CG
T ss_pred cccc-------------------------------------------------------cCCCCCEEECCCCCCCCC-CH
Confidence 2211 134788899999999964 44
Q ss_pred ccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCc-ccCCcccccCCCCcEEecc
Q 037427 709 QIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN-GKIPPQLVELNALVVFSVA 770 (829)
Q Consensus 709 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls 770 (829)
.+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 58899999999999999995 6778999999999999999998 7788888888888888886
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=7.3e-26 Score=254.14 Aligned_cols=236 Identities=23% Similarity=0.200 Sum_probs=186.1
Q ss_pred ccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEe
Q 037427 444 LRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILD 523 (829)
Q Consensus 444 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 523 (829)
+++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++.. ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 4467777777777776666667777777777777777765444 677777777777777776432 236778888
Q ss_pred CCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhh-cCCCCCEEEccCCccc
Q 037427 524 LSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE-RLIRLRYLILANNNLE 602 (829)
Q Consensus 524 Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~ 602 (829)
+++|.+++..+. .+++|+.|++++|.+.+..|.. +..+++|++|++++|.+++.+|..+. .+++|++|+|++|.++
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 888877765543 3467888888888887766655 88899999999999999998888886 7999999999999998
Q ss_pred ccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeeccccee
Q 037427 603 GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISF 682 (829)
Q Consensus 603 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (829)
+..+ ...+++|+.|+|++|++++..|. +..+
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l---------------------------------------------- 213 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSA---------------------------------------------- 213 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECGG-GGGG----------------------------------------------
T ss_pred cccc--cccCCCCCEEECCCCCCCCCCHh-HcCC----------------------------------------------
Confidence 6633 44699999999999999875443 4433
Q ss_pred eecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCC-CCccccccccccCCeeecC
Q 037427 683 SYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLT-GVIPVSFSNLNQVESLDVS 746 (829)
Q Consensus 683 ~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~LdLs 746 (829)
++|+.|+|++|.+++ +|..++.+++|+.|++++|.++ +.+|..+..++.|+.++++
T Consensus 214 -------~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 214 -------AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -------TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -------CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 389999999999995 7888999999999999999999 7788889999999999986
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.9e-27 Score=276.36 Aligned_cols=396 Identities=15% Similarity=0.114 Sum_probs=249.1
Q ss_pred cCccEEEccCCCCCCCcChhhh-CCCCcCEEEcCCC-CCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCC----CCCC
Q 037427 315 FQLESVSLSGSDIHATFPKFLY-NQHDLELVDFSDS-NLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPI----QPHW 388 (829)
Q Consensus 315 ~~L~~L~Ls~~~l~~~~p~~l~-~~~~L~~L~Ls~n-~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~ 388 (829)
++|++|+|++|.+++..+..+. .+++|++|++++| .+.+.....+...+++|++|++++|.+++..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 3677777877777666665564 6788888888888 44433233345678888888888888775443322 3567
Q ss_pred CCCEEEccCCcccccCch-hhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEeccccc-------CCCc
Q 037427 389 HLDALHVSKNFFQGNIPL-EIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANY-------FTGE 460 (829)
Q Consensus 389 ~L~~L~ls~n~l~~~ip~-~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~ 460 (829)
+|++|++++|. +.+.. .+... ...+++|++|++++|...+.++..+..+++|+.|++..+. +.+
T Consensus 185 ~L~~L~l~~~~--~~~~~~~l~~l-----~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~- 256 (594)
T 2p1m_B 185 SLVSLNISCLA--SEVSFSALERL-----VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG- 256 (594)
T ss_dssp CCCEEECTTCC--SCCCHHHHHHH-----HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-
T ss_pred cCcEEEecccC--CcCCHHHHHHH-----HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-
Confidence 88888888876 22221 11111 1125788888888883322366667778888888865443 332
Q ss_pred cCccCCCCCCCcEE-ECCCCcCCCCcccccCCCCCCCEEEccCCcccCCCh-hhhhCCCCCCEEeCCCCcCccc-CCCCC
Q 037427 461 IPKSLSNCSRLEGL-YMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIP-LEFCQLNYLEILDLSENNISGS-LPSCS 537 (829)
Q Consensus 461 ~~~~l~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~~ 537 (829)
++..+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +... ++...
T Consensus 257 l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~ 334 (594)
T 2p1m_B 257 LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLA 334 (594)
T ss_dssp HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHH
T ss_pred HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHH
Confidence 33456777888888 4443322 2445555567888888888888654322 23457788888888877 3311 11111
Q ss_pred -CCCcccEEEccC---------CcccCcCCccccCCCCCccEEEccCCcCCCcchhhhh-cCCCCCEEEcc--C----Cc
Q 037427 538 -SHSTIQQVHLSK---------NMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE-RLIRLRYLILA--N----NN 600 (829)
Q Consensus 538 -~~~~L~~L~L~~---------n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~ 600 (829)
.+++|++|++.+ +.+++.........+++|+.|+++.|.+++..+..+. .+++|+.|+++ + +.
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 467788887743 2332211111112477888888888888776666665 57888888888 3 45
Q ss_pred cccc-----CCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceee
Q 037427 601 LEGE-----VPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMF 675 (829)
Q Consensus 601 l~~~-----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (829)
+++. ++..+..+++|+.|++++ .+++..+..+..
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~---------------------------------------- 453 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT---------------------------------------- 453 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH----------------------------------------
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH----------------------------------------
Confidence 5421 122255678888888866 554322211111
Q ss_pred ecccceeeecCCCCCCcceEEcCCCcCCCCCCccc-ccCCCCCEEECCCCCCCCCccc-cccccccCCeeecCCCcCccc
Q 037427 676 TTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-GKLTNIRALNFSHNNLTGVIPV-SFSNLNQVESLDVSHNNLNGK 753 (829)
Q Consensus 676 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~LdLs~N~l~~~ 753 (829)
.+++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+. .+..+++|+.|++++|+++..
T Consensus 454 ------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 521 (594)
T 2p1m_B 454 ------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521 (594)
T ss_dssp ------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHH
T ss_pred ------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHH
Confidence 13478889999998876655555 6788999999999998755444 345588999999999988644
Q ss_pred CCccc-ccCCCCcEEeccCCc
Q 037427 754 IPPQL-VELNALVVFSVAHNN 773 (829)
Q Consensus 754 ip~~l-~~l~~L~~L~ls~N~ 773 (829)
....+ ..++.|+...+..+.
T Consensus 522 ~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 522 ACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHHHhCCCCEEEEecCCC
Confidence 44444 456777666666554
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.9e-27 Score=276.35 Aligned_cols=383 Identities=12% Similarity=0.059 Sum_probs=273.3
Q ss_pred hhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCC-cCcCC-CCCCCCCCCCCCEEEccCCcccccCchhhhhcc
Q 037427 335 LYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNN-SLSGP-FQTPIQPHWHLDALHVSKNFFQGNIPLEIGVYF 412 (829)
Q Consensus 335 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~~l 412 (829)
...+++|++|++++|.+++..+..+...+++|++|++++| .++.. ++.....+++|++|++++|.+++..+..+...
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~- 179 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF- 179 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS-
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH-
Confidence 4568899999999999987777665557999999999999 44432 22223468899999999999887666555432
Q ss_pred ccccccCCCcccEEEccccc--cccc-CccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCc-------CC
Q 037427 413 PSHLAMGCFNLEYLVLSENS--LHGQ-LFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNN-------LY 482 (829)
Q Consensus 413 ~~~~~~~~~~L~~L~L~~n~--l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------l~ 482 (829)
...+++|++|++++|. +... +......+++|++|++++|...+.++..+..+++|++|+++.+. +.
T Consensus 180 ----~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 180 ----PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp ----CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred ----hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 2246799999999997 3222 12223457999999999993333477778889999999976553 33
Q ss_pred CCcccccCCCCCCCEE-EccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCC--CCCCcccEEEccCCcccCcCCcc
Q 037427 483 GNIPARLGNLSSLNDI-MMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSC--SSHSTIQQVHLSKNMLYGPLKYG 559 (829)
Q Consensus 483 ~~~p~~l~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~ 559 (829)
+ ++..+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++..... ..+++|++|++++| +.......
T Consensus 256 ~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~ 332 (594)
T 2p1m_B 256 G-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV 332 (594)
T ss_dssp H-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH
T ss_pred H-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH
Confidence 2 44578899999999 4444332 345555667899999999999976433221 26789999999988 43211111
Q ss_pred ccCCCCCccEEEcc---------CCcCCCcchhhhh-cCCCCCEEEccCCcccccCCcccC-CCCCCCEEECc--C----
Q 037427 560 TFFNRSSIVTLDLS---------YNSFSGNIPYWIE-RLIRLRYLILANNNLEGEVPNQLC-GLKQLRLIDLS--N---- 622 (829)
Q Consensus 560 ~l~~l~~L~~L~Ls---------~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls--~---- 622 (829)
....+++|++|+++ .+.+++.....+. .+++|+.|.+..|.+++..+..+. .+++|+.|+++ +
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 412 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence 13358899999994 3566654444444 489999999999999876665554 58999999999 3
Q ss_pred CcCccCCCC-CccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCc
Q 037427 623 NNLFGQIPG-CLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK 701 (829)
Q Consensus 623 N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 701 (829)
+.+++...+ .+... ...+++|+.|++++ .
T Consensus 413 ~~l~~~~~~~~~~~l-------------------------------------------------~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAI-------------------------------------------------VEHCKDLRRLSLSG-L 442 (594)
T ss_dssp CTTTCCCTHHHHHHH-------------------------------------------------HHHCTTCCEEECCS-S
T ss_pred ccccCCchhhHHHHH-------------------------------------------------HhhCCCccEEeecC-c
Confidence 333311000 00000 01245899999987 7
Q ss_pred CCCCCCccccc-CCCCCEEECCCCCCCCCccccc-cccccCCeeecCCCcCcccCCc-ccccCCCCcEEeccCCcce
Q 037427 702 LTGEIPPQIGK-LTNIRALNFSHNNLTGVIPVSF-SNLNQVESLDVSHNNLNGKIPP-QLVELNALVVFSVAHNNLS 775 (829)
Q Consensus 702 l~~~ip~~l~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~LdLs~N~l~~~ip~-~l~~l~~L~~L~ls~N~l~ 775 (829)
+++..+..+.. +++|++|+|++|.+++..+..+ ..+++|+.|+|++|++++..+. ....+++|++|++++|+++
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 77666666766 8999999999999987766665 6789999999999999765444 3455899999999999985
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=6.1e-24 Score=220.81 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=50.9
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCC----EEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcE
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIR----ALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVV 766 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~ 766 (829)
+|+.|++++|++++..+..+..+++|+ .|++++|++++..+..+.. .+|+.|+|++|++++..+..+..+++|++
T Consensus 150 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccE
Confidence 455555555555544445555555554 5666666666544444433 35666666666666555555566666666
Q ss_pred EeccCCcceeecC
Q 037427 767 FSVAHNNLSAAER 779 (829)
Q Consensus 767 L~ls~N~l~g~ip 779 (829)
|++++|++++..|
T Consensus 229 L~l~~N~~~c~c~ 241 (276)
T 2z62_A 229 IWLHTNPWDCSCP 241 (276)
T ss_dssp EECCSSCBCCCTT
T ss_pred EEccCCcccccCC
Confidence 6666666665544
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.5e-23 Score=217.01 Aligned_cols=203 Identities=21% Similarity=0.231 Sum_probs=147.4
Q ss_pred hhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCC
Q 037427 513 FCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLR 592 (829)
Q Consensus 513 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 592 (829)
+.++++++.++++++.++ .+|..+ .+.++.|++++|.+.+..+.. |..+++|++|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~-~~~l~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL-PKDTTILHLSENLLYTFSLAT-LMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC-CTTCCEEECTTSCCSEEEGGG-GTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCC-CCCCCEEEcCCCcCCccCHHH-hhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 456788888888888887 444433 257778888888875544443 77778888888888887754332 5677788
Q ss_pred EEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccc
Q 037427 593 YLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEES 672 (829)
Q Consensus 593 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (829)
+|++++|+++ .+|..+..+++|++|++++|++++..|..|..+.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~----------------------------------- 124 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG----------------------------------- 124 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-----------------------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-----------------------------------
Confidence 8888888776 6677777777888888888877765555555443
Q ss_pred eeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcc
Q 037427 673 IMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG 752 (829)
Q Consensus 673 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 752 (829)
+|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++
T Consensus 125 ------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~- 185 (290)
T 1p9a_G 125 ------------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185 (290)
T ss_dssp ------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred ------------------CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence 6777888888887666666777778888888888887666666677778888888888877
Q ss_pred cCCcccccCCCCcEEeccCCcce
Q 037427 753 KIPPQLVELNALVVFSVAHNNLS 775 (829)
Q Consensus 753 ~ip~~l~~l~~L~~L~ls~N~l~ 775 (829)
.+|..+..+..|+.+++++|++.
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccChhhcccccCCeEEeCCCCcc
Confidence 56777777777778887777765
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=7.4e-23 Score=211.66 Aligned_cols=204 Identities=21% Similarity=0.257 Sum_probs=147.3
Q ss_pred CCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccC
Q 037427 519 LEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILAN 598 (829)
Q Consensus 519 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 598 (829)
.+.++++++.++ .+|..+ .+++++|++++|++.+ ++...|..+++|++|++++|+++...+..+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~-~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNI-PADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCC-CTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCC-CCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 445555555554 233322 2455666666666543 3333377778888888888887766666667788888888888
Q ss_pred CcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecc
Q 037427 599 NNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTK 678 (829)
Q Consensus 599 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (829)
|++++..+..+..+++|++|++++|++++..|..+..+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------------------------------------- 133 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT----------------------------------------- 133 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-----------------------------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc-----------------------------------------
Confidence 888766666777788888888888888766555554433
Q ss_pred cceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCccc
Q 037427 679 EISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQL 758 (829)
Q Consensus 679 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l 758 (829)
+|++|+|++|++++..+..|+.+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..+
T Consensus 134 ------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 134 ------------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp ------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ------------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence 77888888888886666668888888888888888887777778888888888888888887666678
Q ss_pred ccCCCCcEEeccCCcceeec
Q 037427 759 VELNALVVFSVAHNNLSAAE 778 (829)
Q Consensus 759 ~~l~~L~~L~ls~N~l~g~i 778 (829)
..+++|++|++++|++...-
T Consensus 202 ~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 202 DSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTCTTCCEEECCSSCBCCSS
T ss_pred ccccCCCEEEecCCCeeCCC
Confidence 88888888888888876543
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=6.4e-24 Score=219.82 Aligned_cols=221 Identities=20% Similarity=0.256 Sum_probs=165.3
Q ss_pred CcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCC
Q 037427 471 LEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKN 550 (829)
Q Consensus 471 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n 550 (829)
+..+++..+.+.+. .....+++|+.|++++|.+... ..+..+++|++|++++|.++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-------------------- 76 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-------------------- 76 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC--------------------
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC--------------------
Confidence 33444445444432 1233455556666666555422 23455555555555555544
Q ss_pred cccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCC
Q 037427 551 MLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIP 630 (829)
Q Consensus 551 ~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 630 (829)
+ ++ .+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 77 ---~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (272)
T 3rfs_A 77 ---D-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150 (272)
T ss_dssp ---C-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ---C-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH
Confidence 3 22 26778888888888888887777778888889999999998887777778888999999999998886666
Q ss_pred CCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCccc
Q 037427 631 GCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI 710 (829)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l 710 (829)
..++.+. +|+.|++++|++++..|..+
T Consensus 151 ~~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~ 177 (272)
T 3rfs_A 151 GVFDKLT-----------------------------------------------------NLTELDLSYNQLQSLPEGVF 177 (272)
T ss_dssp TTTTTCT-----------------------------------------------------TCCEEECCSSCCCCCCTTTT
T ss_pred HHhccCc-----------------------------------------------------cCCEEECCCCCcCccCHHHh
Confidence 5555443 78889999999998778788
Q ss_pred ccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCC
Q 037427 711 GKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNP 781 (829)
Q Consensus 711 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 781 (829)
+.+++|++|++++|++++..|..++.+++|+.|++++|++.+..| .|+.+++++|.++|.+|..
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence 999999999999999999888889999999999999999986654 6888999999999999975
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=5.9e-23 Score=213.34 Aligned_cols=211 Identities=20% Similarity=0.178 Sum_probs=115.2
Q ss_pred CCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccC
Q 037427 470 RLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSK 549 (829)
Q Consensus 470 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~ 549 (829)
+|++|++++|++++..+..+.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------- 95 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA------------- 95 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-------------
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh-------------
Confidence 4556666666555444445555555555555555555444445555556666666655555333222
Q ss_pred CcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCccccc-CCcccCCCCCCCEEECcCCcCccC
Q 037427 550 NMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE-VPNQLCGLKQLRLIDLSNNNLFGQ 628 (829)
Q Consensus 550 n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~ 628 (829)
|..+++|++|++++|++.+..+..+..+++|++|++++|++++. +|..+..+++|++|++++|++++.
T Consensus 96 -----------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 96 -----------FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp -----------TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred -----------hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 33344444444444444443333344444555555555554432 344555555555555555555443
Q ss_pred CCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcc-eEEcCCCcCCCCCC
Q 037427 629 IPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMY-GVDLSCNKLTGEIP 707 (829)
Q Consensus 629 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~ip 707 (829)
.+..+..+. .++.+. .|++++|++++..+
T Consensus 165 ~~~~~~~l~--------------------------------------------------~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 165 YCTDLRVLH--------------------------------------------------QMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp CGGGGHHHH--------------------------------------------------TCTTCCEEEECCSSCCCEECT
T ss_pred CHHHhhhhh--------------------------------------------------hccccceeeecCCCcccccCc
Confidence 333322221 011222 56777777765444
Q ss_pred cccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCC
Q 037427 708 PQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP 755 (829)
Q Consensus 708 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip 755 (829)
..+. ..+|+.|+|++|++++..+..|..+++|+.|+|++|++++..|
T Consensus 195 ~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 195 GAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 4443 3478888888888887666667788888888888888886544
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.5e-22 Score=207.71 Aligned_cols=141 Identities=23% Similarity=0.286 Sum_probs=97.1
Q ss_pred cCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccC
Q 037427 561 FFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHN 640 (829)
Q Consensus 561 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 640 (829)
|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+.
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--- 157 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT--- 157 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---
T ss_pred hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc---
Confidence 44555555555555555555555555666666666666666655555666667777777777766644443333332
Q ss_pred CCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEE
Q 037427 641 NGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALN 720 (829)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 720 (829)
+|+.|++++|++++..+..|..+++|++|+
T Consensus 158 --------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 158 --------------------------------------------------SLKELRLYNNQLKRVPEGAFDKLTELKTLK 187 (270)
T ss_dssp --------------------------------------------------TCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred --------------------------------------------------ccceeEecCCcCcEeChhHhccCCCcCEEE
Confidence 677777777777766666788888999999
Q ss_pred CCCCCCCCCccccccccccCCeeecCCCcCcccC
Q 037427 721 FSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754 (829)
Q Consensus 721 Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~i 754 (829)
|++|++++..+..|..+++|+.|+|++|++...-
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 9999998777777888899999999999887543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.4e-22 Score=211.37 Aligned_cols=204 Identities=24% Similarity=0.221 Sum_probs=177.9
Q ss_pred ccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCC
Q 037427 488 RLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSS 566 (829)
Q Consensus 488 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~ 566 (829)
.+++++++++++++++.++. +|..+ .+.++.|++++|.+++..+..+ .+++|++|++++|.+.+..+ ...+++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTT
T ss_pred cccccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCc
Confidence 36788999999999999984 55444 3789999999999997777655 88999999999999965433 378899
Q ss_pred ccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCC
Q 037427 567 IVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVG 646 (829)
Q Consensus 567 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 646 (829)
|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+.
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--------- 148 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP--------- 148 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT---------
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccccc---------
Confidence 999999999998 6777889999999999999999987788999999999999999999876665555443
Q ss_pred CCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCC
Q 037427 647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNL 726 (829)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 726 (829)
+|+.|+|++|++++..+..|..+++|+.|+|++|++
T Consensus 149 --------------------------------------------~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 149 --------------------------------------------KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp --------------------------------------------TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence 899999999999977777789999999999999999
Q ss_pred CCCccccccccccCCeeecCCCcCcc
Q 037427 727 TGVIPVSFSNLNQVESLDVSHNNLNG 752 (829)
Q Consensus 727 ~~~~p~~l~~l~~L~~LdLs~N~l~~ 752 (829)
+ .+|..+..+.+|+.|+|++|++..
T Consensus 185 ~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 185 Y-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp C-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred C-ccChhhcccccCCeEEeCCCCccC
Confidence 9 778888889999999999999974
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=9.2e-23 Score=211.12 Aligned_cols=230 Identities=17% Similarity=0.216 Sum_probs=179.0
Q ss_pred ccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEe
Q 037427 444 LRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILD 523 (829)
Q Consensus 444 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 523 (829)
+..+..+++..+.+.+.. ....+++|+.|++++|.+.. + ..+..+++|++|++++|.+++. ..+..+++|++|+
T Consensus 18 ~~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred HHHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence 344556666666666443 35578899999999999874 3 3588999999999999999863 4788899999999
Q ss_pred CCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccc
Q 037427 524 LSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG 603 (829)
Q Consensus 524 Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 603 (829)
+++|.+++..+. .|..+++|++|++++|++++..+..+..+++|++|++++|++++
T Consensus 92 L~~n~l~~~~~~------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 147 (272)
T 3rfs_A 92 LTGNQLQSLPNG------------------------VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147 (272)
T ss_dssp CTTSCCCCCCTT------------------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChh------------------------HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc
Confidence 999988744332 25667777777777777777777777778888888888888876
Q ss_pred cCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceee
Q 037427 604 EVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFS 683 (829)
Q Consensus 604 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (829)
..+..+..+++|+.|++++|++++..|..++.+.
T Consensus 148 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------------------------- 181 (272)
T 3rfs_A 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT---------------------------------------------- 181 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------------------------------------
T ss_pred cCHHHhccCccCCEEECCCCCcCccCHHHhcCCc----------------------------------------------
Confidence 6666777888888888888888766555444443
Q ss_pred ecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCC
Q 037427 684 YKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNA 763 (829)
Q Consensus 684 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~ 763 (829)
+|+.|++++|++++..|..++.+++|+.|++++|.+.+.. ++|+.|+++.|+++|.+|..++.+..
T Consensus 182 -------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 182 -------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -------cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCcccccCC
Confidence 7888888888888888878889999999999999888653 46889999999999999988776644
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.3e-24 Score=231.98 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=28.4
Q ss_pred CccEEEccCCcCCCcchhhhh----cC-CCCCEEEccCCccccc----CCcccCC-CCCCCEEECcCCcCc
Q 037427 566 SIVTLDLSYNSFSGNIPYWIE----RL-IRLRYLILANNNLEGE----VPNQLCG-LKQLRLIDLSNNNLF 626 (829)
Q Consensus 566 ~L~~L~Ls~n~l~~~~~~~l~----~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~Ls~N~l~ 626 (829)
+|++|++++|++++..+..+. .+ ++|++|+|++|.+++. ++..+.. .++|++|+|++|+++
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 555555555555544443322 22 3555555555555431 2223322 235555555555554
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=9.5e-24 Score=228.36 Aligned_cols=178 Identities=23% Similarity=0.181 Sum_probs=117.0
Q ss_pred EEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcc----cccCCCC-CCCEEEccCCcccCCChhhhhCC-----CC
Q 037427 449 RLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIP----ARLGNLS-SLNDIMMASNHLQGPIPLEFCQL-----NY 518 (829)
Q Consensus 449 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~ 518 (829)
.++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888988888877777779999999999887666 6777888 89999999999988777777664 88
Q ss_pred CCEEeCCCCcCcccCCCCC-----CC-CcccEEEccCCcccCcCCcc---ccCC-CCCccEEEccCCcCCCcch----hh
Q 037427 519 LEILDLSENNISGSLPSCS-----SH-STIQQVHLSKNMLYGPLKYG---TFFN-RSSIVTLDLSYNSFSGNIP----YW 584 (829)
Q Consensus 519 L~~L~Ls~n~l~~~~~~~~-----~~-~~L~~L~L~~n~l~~~~~~~---~l~~-l~~L~~L~Ls~n~l~~~~~----~~ 584 (829)
|++|++++|.+++..+..+ .. ++|++|++++|.+.+..+.. .+.. .++|++|++++|++++..+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 8999999888876544321 22 56666777666664332211 0222 2466666666666664332 23
Q ss_pred hhcCC-CCCEEEccCCcccccCCccc----CCC-CCCCEEECcCCcCc
Q 037427 585 IERLI-RLRYLILANNNLEGEVPNQL----CGL-KQLRLIDLSNNNLF 626 (829)
Q Consensus 585 l~~l~-~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~Ls~N~l~ 626 (829)
+..++ +|++|+|++|++++..+..+ ..+ ++|++|||++|+++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 33443 66666666666654444322 233 36666666666654
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.8e-24 Score=235.02 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=63.4
Q ss_pred ccCccCCCCCCCcEEECCCCcCCCCcc----cccCCCCCCCEEEccCCc---ccCCChhhh-------hCCCCCCEEeCC
Q 037427 460 EIPKSLSNCSRLEGLYMSDNNLYGNIP----ARLGNLSSLNDIMMASNH---LQGPIPLEF-------CQLNYLEILDLS 525 (829)
Q Consensus 460 ~~~~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~l~~n~---l~~~~~~~~-------~~l~~L~~L~Ls 525 (829)
.++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|. +.+.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455667778889999999998886543 347788899999998864 444556554 677888888888
Q ss_pred CCcCccc----CCCCC-CCCcccEEEccCCcc
Q 037427 526 ENNISGS----LPSCS-SHSTIQQVHLSKNML 552 (829)
Q Consensus 526 ~n~l~~~----~~~~~-~~~~L~~L~L~~n~l 552 (829)
+|.+++. +|..+ .+++|++|+|++|.+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 8887752 23222 445555555555554
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.8e-21 Score=198.78 Aligned_cols=180 Identities=24% Similarity=0.272 Sum_probs=94.1
Q ss_pred CCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEcc
Q 037427 518 YLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILA 597 (829)
Q Consensus 518 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 597 (829)
..++++++++.++ .+|..+. +.++.|++++|.+.+..+.. |..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~-~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP-ADTEKLDLQSTGLATLSDAT-FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC-TTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC-CCCCEEEccCCCcCccCHhH-hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4556777777666 3343221 45555555555554433322 5555555555555555555555555555555555555
Q ss_pred CCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeec
Q 037427 598 NNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTT 677 (829)
Q Consensus 598 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (829)
+|++++..+..+..+++|++|++++|++++..+..+..+.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~---------------------------------------- 131 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT---------------------------------------- 131 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------------------------------
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC----------------------------------------
Confidence 5555544444555555555555555555533333332222
Q ss_pred ccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCccc
Q 037427 678 KEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGK 753 (829)
Q Consensus 678 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ 753 (829)
+|+.|+|++|++++..+..|+.+++|++|+|++|++++..|..|..+++|+.|+|++|++++.
T Consensus 132 -------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 132 -------------KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred -------------cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 455555555555544444455555555555555555554444555555555555555555543
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.3e-21 Score=206.10 Aligned_cols=208 Identities=20% Similarity=0.352 Sum_probs=110.6
Q ss_pred EECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCccc
Q 037427 474 LYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLY 553 (829)
Q Consensus 474 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 553 (829)
+.+..+.+.+.+ .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+
T Consensus 24 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~------------------- 80 (308)
T 1h6u_A 24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP------------------- 80 (308)
T ss_dssp HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-------------------
T ss_pred HHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-------------------
Confidence 344455554322 23456677777777777764 33 46667777777777777664322
Q ss_pred CcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCc
Q 037427 554 GPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCL 633 (829)
Q Consensus 554 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 633 (829)
+..+++|++|++++|++++. + .+..+++|++|++++|++++ ++. +..+++|+.|++++|++++..+ +
T Consensus 81 -------~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l 147 (308)
T 1h6u_A 81 -------LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--L 147 (308)
T ss_dssp -------GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--G
T ss_pred -------HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--c
Confidence 34444455555555544432 1 34445555555555555543 221 4555555555555555543221 1
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccC
Q 037427 634 DNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKL 713 (829)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l 713 (829)
.. +++|+.|++++|++++. +. +..+
T Consensus 148 ~~-----------------------------------------------------l~~L~~L~l~~n~l~~~-~~-l~~l 172 (308)
T 1h6u_A 148 AG-----------------------------------------------------LTNLQYLSIGNAQVSDL-TP-LANL 172 (308)
T ss_dssp GG-----------------------------------------------------CTTCCEEECCSSCCCCC-GG-GTTC
T ss_pred cC-----------------------------------------------------CCCccEEEccCCcCCCC-hh-hcCC
Confidence 11 22455555555555532 22 5556
Q ss_pred CCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCccee
Q 037427 714 TNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA 776 (829)
Q Consensus 714 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 776 (829)
++|+.|++++|++++..+ +..+++|+.|+|++|++++..| +..+++|++|++++|++++
T Consensus 173 ~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 666666666666664433 5556666666666666654332 5556666666666666654
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=6.3e-22 Score=209.17 Aligned_cols=184 Identities=18% Similarity=0.129 Sum_probs=92.3
Q ss_pred cccEEEcccccccccCcc---ccccccCCcEEecccccCCCccCccC--CCCCCCcEEECCCCcCCCCcc----cccCCC
Q 037427 422 NLEYLVLSENSLHGQLFS---KKNYLRKLARLHLDANYFTGEIPKSL--SNCSRLEGLYMSDNNLYGNIP----ARLGNL 492 (829)
Q Consensus 422 ~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~p----~~l~~l 492 (829)
.++.+.+.++.++..... .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 455555555554422111 11224557777777777766666665 666777777777777665433 223345
Q ss_pred CCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEc
Q 037427 493 SSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDL 572 (829)
Q Consensus 493 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 572 (829)
++|++|++++|++.+..+..+..+++|++|++++|++.+.. +..+...+..+++|++|++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------------------~~~~~~~~~~l~~L~~L~L 204 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER--------------------GLMAALCPHKFPAIQNLAL 204 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH--------------------HHHTTSCTTSSCCCCSCBC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch--------------------hhhHHHhhhcCCCCCEEEC
Confidence 55555555555555555555555555555555555543210 0000111244556666666
Q ss_pred cCCcCCCcch--h-hhhcCCCCCEEEccCCcccccCCcccCCC---CCCCEEECcCCcC
Q 037427 573 SYNSFSGNIP--Y-WIERLIRLRYLILANNNLEGEVPNQLCGL---KQLRLIDLSNNNL 625 (829)
Q Consensus 573 s~n~l~~~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~Ls~N~l 625 (829)
++|+++...+ . .+..+++|++|+|++|++++..|..+..+ ++|++|++++|++
T Consensus 205 s~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 205 RNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp CSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC
T ss_pred CCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC
Confidence 6666642111 1 13445555555555555554444444333 3444444444443
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=213.42 Aligned_cols=232 Identities=18% Similarity=0.179 Sum_probs=141.3
Q ss_pred CCcEEECCCCcCCCCccc---ccCCCCCCCEEEccCCcccCCChhhh--hCCCCCCEEeCCCCcCcccCCCCCCCCcccE
Q 037427 470 RLEGLYMSDNNLYGNIPA---RLGNLSSLNDIMMASNHLQGPIPLEF--CQLNYLEILDLSENNISGSLPSCSSHSTIQQ 544 (829)
Q Consensus 470 ~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 544 (829)
.++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~-------- 136 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL-------- 136 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH--------
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh--------
Confidence 456666666555421100 11123445666666666655555554 55555555555555555322210
Q ss_pred EEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCccccc--C--CcccCCCCCCCEEEC
Q 037427 545 VHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGE--V--PNQLCGLKQLRLIDL 620 (829)
Q Consensus 545 L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~L 620 (829)
+...+..+++|++|++++|++.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++
T Consensus 137 ------------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L 204 (310)
T 4glp_A 137 ------------AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL 204 (310)
T ss_dssp ------------HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC
T ss_pred ------------HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC
Confidence 011134567777777777777777777777777777777777776542 1 223456777888888
Q ss_pred cCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCC
Q 037427 621 SNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCN 700 (829)
Q Consensus 621 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 700 (829)
++|+++. +|.....+ ...+++|++|||++|
T Consensus 205 s~N~l~~-l~~~~~~l-------------------------------------------------~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 205 RNTGMET-PTGVCAAL-------------------------------------------------AAAGVQPHSLDLSHN 234 (310)
T ss_dssp CSSCCCC-HHHHHHHH-------------------------------------------------HHHTCCCSSEECTTS
T ss_pred CCCCCCc-hHHHHHHH-------------------------------------------------HhcCCCCCEEECCCC
Confidence 8877752 11100000 001236777888888
Q ss_pred cCCCCCCcccccC---CCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCccee
Q 037427 701 KLTGEIPPQIGKL---TNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA 776 (829)
Q Consensus 701 ~l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 776 (829)
++++.+|..+..+ ++|++|+|++|+++ .+|..+. ++|+.|||++|++++. |. +..+++|+.|++++|+++.
T Consensus 235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 235 SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 8887777777666 58888888888888 5676664 6888888888888853 33 5677888888888888764
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=8.9e-24 Score=231.00 Aligned_cols=253 Identities=15% Similarity=0.174 Sum_probs=162.8
Q ss_pred CccccccccCCcEEecccccCCCcc----CccCCCCCCCcEEECCCCc---CCCCccccc-------CCCCCCCEEEccC
Q 037427 437 LFSKKNYLRKLARLHLDANYFTGEI----PKSLSNCSRLEGLYMSDNN---LYGNIPARL-------GNLSSLNDIMMAS 502 (829)
Q Consensus 437 ~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~---l~~~~p~~l-------~~l~~L~~L~l~~ 502 (829)
++..+..+++|++|++++|.+++.. +..+..+++|++|++++|. +.+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 4566778899999999999998653 3457889999999999964 445556554 7899999999999
Q ss_pred CcccC----CChhhhhCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcC
Q 037427 503 NHLQG----PIPLEFCQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSF 577 (829)
Q Consensus 503 n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l 577 (829)
|.+.+ .++..+..+++|++|++++|.++...+..+ .. +.. +..+++. ...++|++|++++|++
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~--l~~~~~~--------~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQE--LAVNKKA--------KNAPPLRSIICGRNRL 171 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHH--HHHHHHH--------HTCCCCCEEECCSSCC
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH--HHH--Hhhhhhc--------ccCCCCcEEECCCCCC
Confidence 99987 477788999999999999999864322211 00 000 0000000 0015666666666666
Q ss_pred C-Ccch---hhhhcCCCCCEEEccCCcccc-----cCCcccCCCCCCCEEECcCCcCc----cCCCCCccCCCccCCCCC
Q 037427 578 S-GNIP---YWIERLIRLRYLILANNNLEG-----EVPNQLCGLKQLRLIDLSNNNLF----GQIPGCLDNTSLHNNGDN 644 (829)
Q Consensus 578 ~-~~~~---~~l~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~Ls~N~l~----~~~p~~~~~~~~~~~~~~ 644 (829)
+ +.++ ..+..+++|++|++++|+++. ..+..+..+++|++|+|++|.++ +.+|..+..+
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~-------- 243 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW-------- 243 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC--------
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC--------
Confidence 5 2333 345566677777777776652 23335666666777777766664 2233322222
Q ss_pred CCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCC----CCcccc--cCCCCCE
Q 037427 645 VGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE----IPPQIG--KLTNIRA 718 (829)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----ip~~l~--~l~~L~~ 718 (829)
++|+.|+|++|++++. +|..+. .+++|++
T Consensus 244 ---------------------------------------------~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~ 278 (386)
T 2ca6_A 244 ---------------------------------------------PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278 (386)
T ss_dssp ---------------------------------------------TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred ---------------------------------------------CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEE
Confidence 2566666666666544 444553 3677777
Q ss_pred EECCCCCCCC----Cccccc-cccccCCeeecCCCcCcccC
Q 037427 719 LNFSHNNLTG----VIPVSF-SNLNQVESLDVSHNNLNGKI 754 (829)
Q Consensus 719 L~Ls~N~l~~----~~p~~l-~~l~~L~~LdLs~N~l~~~i 754 (829)
|+|++|.+++ .+|..+ .++++|++|+|++|++++..
T Consensus 279 L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred EECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 7777777776 366665 55677777777777777655
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.1e-22 Score=218.02 Aligned_cols=175 Identities=18% Similarity=0.227 Sum_probs=91.1
Q ss_pred ccEEEcccccccccCccccccc--cCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCC-cccccCCCCCCCEEE
Q 037427 423 LEYLVLSENSLHGQLFSKKNYL--RKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGN-IPARLGNLSSLNDIM 499 (829)
Q Consensus 423 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~ 499 (829)
++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 456666665554 2233334 5666666666666654444 33566666666666666544 555566666666666
Q ss_pred ccCCcccCCChhhhhCCCCCCEEeCCCC-cCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCC-cC
Q 037427 500 MASNHLQGPIPLEFCQLNYLEILDLSEN-NISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN-SF 577 (829)
Q Consensus 500 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n-~l 577 (829)
+++|.+++..+..+..+++|++|++++| .+++. .++.. +..+++|++|++++| .+
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------------------~l~~~-~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----------------------ALQTL-LSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----------------------HHHHH-HHHCTTCCEEECCCCTTC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH----------------------HHHHH-HhcCCCCCEEcCCCCCCc
Confidence 6666665555555555666666666655 33321 01111 334455555555555 55
Q ss_pred CCc-chhhhhcCC-CCCEEEccCC--ccc-ccCCcccCCCCCCCEEECcCCc
Q 037427 578 SGN-IPYWIERLI-RLRYLILANN--NLE-GEVPNQLCGLKQLRLIDLSNNN 624 (829)
Q Consensus 578 ~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~Ls~N~ 624 (829)
++. ++..+..++ +|++|++++| .++ +.++..+..+++|+.|++++|.
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 432 344455555 5555555555 232 2233334444444444444444
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=5.5e-23 Score=220.40 Aligned_cols=251 Identities=15% Similarity=0.167 Sum_probs=186.1
Q ss_pred CCcEEecccccCCCccCccCCCC--CCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCC-ChhhhhCCCCCCEE
Q 037427 446 KLARLHLDANYFTGEIPKSLSNC--SRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGP-IPLEFCQLNYLEIL 522 (829)
Q Consensus 446 ~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 522 (829)
.++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3677788777765 3344445 6777788887777765554 44677777777777777654 56666677777777
Q ss_pred eCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCC-cCCCc-chhhhhcCCCCCEEEccCC-
Q 037427 523 DLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYN-SFSGN-IPYWIERLIRLRYLILANN- 599 (829)
Q Consensus 523 ~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L~L~~n- 599 (829)
++++|.+++ ..+.. +..+++|++|++++| .+++. ++..+..+++|++|++++|
T Consensus 124 ~L~~~~l~~-----------------------~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 124 SLEGLRLSD-----------------------PIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp ECTTCBCCH-----------------------HHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred eCcCcccCH-----------------------HHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 777776553 33333 677899999999999 67763 6777889999999999999
Q ss_pred ccccc-CCcccCCCC-CCCEEECcCCc--Cc-cCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCcccccccee
Q 037427 600 NLEGE-VPNQLCGLK-QLRLIDLSNNN--LF-GQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIM 674 (829)
Q Consensus 600 ~l~~~-~~~~l~~l~-~L~~L~Ls~N~--l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (829)
.+++. ++..+..++ +|++|++++|. ++ +.+|..+..
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~--------------------------------------- 220 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR--------------------------------------- 220 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH---------------------------------------
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh---------------------------------------
Confidence 99864 577788899 99999999994 44 223322222
Q ss_pred eecccceeeecCCCCCCcceEEcCCCc-CCCCCCcccccCCCCCEEECCCCC-CCCCccccccccccCCeeecCCCcCcc
Q 037427 675 FTTKEISFSYKGKPLNKMYGVDLSCNK-LTGEIPPQIGKLTNIRALNFSHNN-LTGVIPVSFSNLNQVESLDVSHNNLNG 752 (829)
Q Consensus 675 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~LdLs~N~l~~ 752 (829)
+++|+.|++++|. +++..+..+..+++|++|++++|. ++......++++++|+.|++++| ++.
T Consensus 221 --------------~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 221 --------------CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp --------------CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred --------------CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence 3489999999999 788888899999999999999995 33332336888999999999999 442
Q ss_pred cCCcccccC-CCCcEEeccCCcceeecCCC
Q 037427 753 KIPPQLVEL-NALVVFSVAHNNLSAAERNP 781 (829)
Q Consensus 753 ~ip~~l~~l-~~L~~L~ls~N~l~g~ip~~ 781 (829)
+.+..+ ..+..|++++|+++|..|..
T Consensus 286 ---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 286 ---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp ---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred ---HHHHHHHhhCcceEEecccCccccCCc
Confidence 234444 34777889999999998864
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4.1e-21 Score=202.32 Aligned_cols=162 Identities=22% Similarity=0.351 Sum_probs=90.2
Q ss_pred EcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCccc
Q 037427 427 VLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQ 506 (829)
Q Consensus 427 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 506 (829)
.+..+.+++.+ ....+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|+++
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC
Confidence 44444444322 23345666666666666653 33 35566666666666666654322 555556666666665555
Q ss_pred CCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhh
Q 037427 507 GPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE 586 (829)
Q Consensus 507 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 586 (829)
+. + .+..+++|++|++++|.+++ ++. +..+++|++|++++|++++..+ +.
T Consensus 99 ~~-~-~~~~l~~L~~L~l~~n~l~~------------------------~~~--l~~l~~L~~L~l~~n~l~~~~~--l~ 148 (308)
T 1h6u_A 99 NV-S-AIAGLQSIKTLDLTSTQITD------------------------VTP--LAGLSNLQVLYLDLNQITNISP--LA 148 (308)
T ss_dssp CC-G-GGTTCTTCCEEECTTSCCCC------------------------CGG--GTTCTTCCEEECCSSCCCCCGG--GG
T ss_pred Cc-h-hhcCCCCCCEEECCCCCCCC------------------------chh--hcCCCCCCEEECCCCccCcCcc--cc
Confidence 32 2 34445555555555554431 111 5566677777777777665443 66
Q ss_pred cCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCc
Q 037427 587 RLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLF 626 (829)
Q Consensus 587 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 626 (829)
.+++|++|++++|++++..+ +..+++|+.|++++|+++
T Consensus 149 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 149 GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 66677777777776664322 556666666666666654
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.2e-20 Score=192.68 Aligned_cols=182 Identities=20% Similarity=0.262 Sum_probs=159.3
Q ss_pred CcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEE
Q 037427 540 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLID 619 (829)
Q Consensus 540 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 619 (829)
...++++++++.+. .+|.. +. +.++.|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 35778999999884 56654 32 6899999999999998888899999999999999999988888899999999999
Q ss_pred CcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCC
Q 037427 620 LSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSC 699 (829)
Q Consensus 620 Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 699 (829)
+++|++++..|..+..+. +|++|+|++
T Consensus 90 L~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~ 116 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLT-----------------------------------------------------QLDKLYLGG 116 (251)
T ss_dssp CTTSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCS
T ss_pred CCCCcccccChhHhcccC-----------------------------------------------------CCCEEEcCC
Confidence 999999876666555443 889999999
Q ss_pred CcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeec
Q 037427 700 NKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAE 778 (829)
Q Consensus 700 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 778 (829)
|++++..+..|..+++|++|+|++|++++..|..|+.+++|+.|||++|++++..|..+..+++|++|++++|++++..
T Consensus 117 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred CcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 9999777777899999999999999999888878999999999999999999888888999999999999999998763
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=4.8e-21 Score=194.23 Aligned_cols=196 Identities=18% Similarity=0.256 Sum_probs=113.3
Q ss_pred CCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCc-CcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEc
Q 037427 494 SLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENN-ISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDL 572 (829)
Q Consensus 494 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 572 (829)
+|++|++++|++++..+..|..+++|++|++++|+ +++ ++...|.++++|++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~------------------------i~~~~f~~l~~L~~L~l 87 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ------------------------LESHSFYNLSKVTHIEI 87 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE------------------------ECTTTEESCTTCCEEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce------------------------eCHhHcCCCcCCcEEEC
Confidence 66666666666665555556666666666666664 442 22222555566666666
Q ss_pred cC-CcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCC---EEECcCC-cCccCCCCCccCCCccCCCCCCCC
Q 037427 573 SY-NSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLR---LIDLSNN-NLFGQIPGCLDNTSLHNNGDNVGS 647 (829)
Q Consensus 573 s~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~~~~~~~~~~~~~ 647 (829)
++ |++++..+..|.++++|++|++++|++++ +|. +..+++|+ +|++++| ++++..+..|..+.
T Consensus 88 ~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~---------- 155 (239)
T 2xwt_C 88 RNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC---------- 155 (239)
T ss_dssp EEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB----------
T ss_pred CCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh----------
Confidence 65 56655555555666666666666666653 443 55555555 6666666 55544443343332
Q ss_pred CCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcc-eEEcCCCcCCCCCCcccccCCCCCEEECCCCC-
Q 037427 648 SAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMY-GVDLSCNKLTGEIPPQIGKLTNIRALNFSHNN- 725 (829)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~- 725 (829)
+|+ .|++++|+++ .+|......++|+.|++++|+
T Consensus 156 -------------------------------------------~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~ 191 (239)
T 2xwt_C 156 -------------------------------------------NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKY 191 (239)
T ss_dssp -------------------------------------------SSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTT
T ss_pred -------------------------------------------cceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCC
Confidence 556 6666666666 333332222666777777773
Q ss_pred CCCCcccccccc-ccCCeeecCCCcCcccCCcccccCCCCcEEeccCC
Q 037427 726 LTGVIPVSFSNL-NQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHN 772 (829)
Q Consensus 726 l~~~~p~~l~~l-~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 772 (829)
+++..+..|..+ ++|+.||+++|++++ +|.. .+.+|+.|+++++
T Consensus 192 l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 192 LTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred cccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 665555666666 677777777777763 3333 4556666666655
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=6.4e-21 Score=193.29 Aligned_cols=196 Identities=16% Similarity=0.153 Sum_probs=126.8
Q ss_pred cccEEEcccccccccCccccccccCCcEEeccccc-CCCccCccCCCCCCCcEEECCC-CcCCCCcccccCCCCCCCEEE
Q 037427 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANY-FTGEIPKSLSNCSRLEGLYMSD-NNLYGNIPARLGNLSSLNDIM 499 (829)
Q Consensus 422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~ 499 (829)
+|++|++++|++++..+..+..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555556666666666666665 5544444566666666666666 666655555666666666666
Q ss_pred ccCCcccCCChhhhhCCCCCC---EEeCCCC-cCcccCCCCC-CCCccc-EEEccCCcccCcCCccccCCCCCccEEEcc
Q 037427 500 MASNHLQGPIPLEFCQLNYLE---ILDLSEN-NISGSLPSCS-SHSTIQ-QVHLSKNMLYGPLKYGTFFNRSSIVTLDLS 573 (829)
Q Consensus 500 l~~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~-~~~~L~-~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls 573 (829)
+++|++++ +|. +..+++|+ +|++++| .+++..+..+ .+++|+ +|++++|++. .+|...|.. ++|+.|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence 66666664 343 55666666 6777776 6664444434 566666 6777776664 555554554 778888888
Q ss_pred CCc-CCCcchhhhhcC-CCCCEEEccCCcccccCCcccCCCCCCCEEECcCCc
Q 037427 574 YNS-FSGNIPYWIERL-IRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNN 624 (829)
Q Consensus 574 ~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 624 (829)
+|+ +++..+..+..+ ++|++|++++|++++ +|.. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 884 776666777777 788888888888873 4433 56777888877653
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.6e-20 Score=212.11 Aligned_cols=94 Identities=21% Similarity=0.325 Sum_probs=53.0
Q ss_pred CCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccC
Q 037427 470 RLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSK 549 (829)
Q Consensus 470 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~ 549 (829)
+|+.|++++|.+++ +|..+ .++|++|++++|+++ .+| ..+++|++|++++|++++ +|. +. .+|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECCC
Confidence 67788888887775 55544 266777777777776 344 345666777777776664 443 21 1455555555
Q ss_pred CcccCcCCccccCCCCCccEEEccCCcCC
Q 037427 550 NMLYGPLKYGTFFNRSSIVTLDLSYNSFS 578 (829)
Q Consensus 550 n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~ 578 (829)
|++++ +|. .+++|+.|++++|+++
T Consensus 130 N~l~~-lp~----~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 130 NQLTM-LPE----LPALLEYINADNNQLT 153 (571)
T ss_dssp SCCSC-CCC----CCTTCCEEECCSSCCS
T ss_pred CcCCC-CCC----cCccccEEeCCCCccC
Confidence 54433 332 2344444444444444
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=8.8e-20 Score=206.00 Aligned_cols=115 Identities=22% Similarity=0.337 Sum_probs=59.4
Q ss_pred CCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEcc
Q 037427 494 SLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLS 573 (829)
Q Consensus 494 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls 573 (829)
+|+.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECC
Confidence 56666666666664 44333 255666666666665 344 234555555555555544 433 222 55555555
Q ss_pred CCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCcc
Q 037427 574 YNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFG 627 (829)
Q Consensus 574 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 627 (829)
+|++++ +|. .+++|+.|++++|++++ +|. .+++|++|++++|++++
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence 555554 332 34555555555555553 333 34455555555555543
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=7.7e-20 Score=196.52 Aligned_cols=240 Identities=18% Similarity=0.135 Sum_probs=128.7
Q ss_pred cEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCCh-hhhhCCCCCCE-EeCC
Q 037427 448 ARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIP-LEFCQLNYLEI-LDLS 525 (829)
Q Consensus 448 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~Ls 525 (829)
++++.++++++ .+|..+ .+++++|+|++|+++...+..|.++++|++|+|++|++.+.+| ..|.++++++. +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666666666 455544 2466777777777764444456666666666666666654443 34555555543 3444
Q ss_pred CCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccC-Cccccc
Q 037427 526 ENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILAN-NNLEGE 604 (829)
Q Consensus 526 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~ 604 (829)
+|+++...|. .|..+++|++|++++|++.+..+..+....++..|++.+ +++...
T Consensus 89 ~N~l~~l~~~------------------------~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l 144 (350)
T 4ay9_X 89 ANNLLYINPE------------------------AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144 (350)
T ss_dssp ETTCCEECTT------------------------SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred CCcccccCch------------------------hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence 4555433333 355566666666666666555444444445555666544 345433
Q ss_pred CCcccCCCC-CCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceee
Q 037427 605 VPNQLCGLK-QLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFS 683 (829)
Q Consensus 605 ~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (829)
.+..+..+. .++.|++++|+|+...+..+..
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~------------------------------------------------ 176 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNG------------------------------------------------ 176 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTT------------------------------------------------
T ss_pred cccchhhcchhhhhhccccccccCCChhhccc------------------------------------------------
Confidence 444455543 4666666666665322222211
Q ss_pred ecCCCCCCcceEEcCC-CcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCC
Q 037427 684 YKGKPLNKMYGVDLSC-NKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELN 762 (829)
Q Consensus 684 ~~~~~l~~L~~L~Ls~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 762 (829)
.+++.+++++ |.++...+..|..+++|++|+|++|+|+...+..|.+ |+.|.+.++.--..+| .+.+++
T Consensus 177 ------~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~~lP-~l~~l~ 246 (350)
T 4ay9_X 177 ------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLKKLP-TLEKLV 246 (350)
T ss_dssp ------EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCCCCC-CTTTCC
T ss_pred ------cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcCcCC-CchhCc
Confidence 1455666653 4454333345666777777777777776444444433 3333333332222455 356666
Q ss_pred CCcEEeccCC
Q 037427 763 ALVVFSVAHN 772 (829)
Q Consensus 763 ~L~~L~ls~N 772 (829)
+|+.++++++
T Consensus 247 ~L~~l~l~~~ 256 (350)
T 4ay9_X 247 ALMEASLTYP 256 (350)
T ss_dssp SCCEEECSCH
T ss_pred ChhhCcCCCC
Confidence 7777776654
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=8.9e-20 Score=196.04 Aligned_cols=207 Identities=16% Similarity=0.089 Sum_probs=140.7
Q ss_pred CCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCccE-EEccCCcCCCcchhhhhcCCCCCEEE
Q 037427 518 YLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVT-LDLSYNSFSGNIPYWIERLIRLRYLI 595 (829)
Q Consensus 518 ~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~-L~Ls~n~l~~~~~~~l~~l~~L~~L~ 595 (829)
++++|+|++|+++...+..+ .+++|++|+|++|++.+.++..+|.++++++. +++++|+++...|..|..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 34444444444442222222 34444444444554445566666888888765 66778999988889999999999999
Q ss_pred ccCCcccccCCcccCCCCCCCEEECcC-CcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCcccccccee
Q 037427 596 LANNNLEGEVPNQLCGLKQLRLIDLSN-NNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIM 674 (829)
Q Consensus 596 L~~n~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (829)
+++|++.+..+..+....++..|++.+ +++....+..|..+.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~------------------------------------- 153 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS------------------------------------- 153 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB-------------------------------------
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcc-------------------------------------
Confidence 999999877676777778888999876 455533333333322
Q ss_pred eecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCC-CCCCCCccccccccccCCeeecCCCcCccc
Q 037427 675 FTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSH-NNLTGVIPVSFSNLNQVESLDVSHNNLNGK 753 (829)
Q Consensus 675 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ 753 (829)
..++.|+|++|+|+ .+|.......+|+.|++++ |.++...++.|..+++|+.|||++|+|+..
T Consensus 154 ---------------~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 154 ---------------FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp ---------------SSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred ---------------hhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 25788999999999 4555555667899999985 666655556789999999999999999954
Q ss_pred CCcccccCCCCcEEeccCCcceeecCC
Q 037427 754 IPPQLVELNALVVFSVAHNNLSAAERN 780 (829)
Q Consensus 754 ip~~l~~l~~L~~L~ls~N~l~g~ip~ 780 (829)
.+..+. .|+.|.+.+++--..+|.
T Consensus 218 p~~~~~---~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 218 PSYGLE---NLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CSSSCT---TCCEEECTTCTTCCCCCC
T ss_pred Chhhhc---cchHhhhccCCCcCcCCC
Confidence 444444 555565555543344553
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.4e-19 Score=179.14 Aligned_cols=174 Identities=22% Similarity=0.224 Sum_probs=135.3
Q ss_pred EEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCC
Q 037427 544 QVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNN 623 (829)
Q Consensus 544 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 623 (829)
.++.+++.+. .+|.. -.++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 11 ~v~c~~~~l~-~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCS-SCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCcc-CCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4445555442 34432 2357888888888888777777788888888888888888666666788888888888888
Q ss_pred cCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCC
Q 037427 624 NLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT 703 (829)
Q Consensus 624 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 703 (829)
++++..+..+..+. +|++|++++|+++
T Consensus 87 ~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~l~ 113 (208)
T 2o6s_A 87 QLQSLPNGVFDKLT-----------------------------------------------------QLKELALNTNQLQ 113 (208)
T ss_dssp CCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSCCC
T ss_pred cCCccCHhHhcCcc-----------------------------------------------------CCCEEEcCCCcCc
Confidence 88765554444433 7888899999988
Q ss_pred CCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceeecCCC
Q 037427 704 GEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAAERNP 781 (829)
Q Consensus 704 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 781 (829)
+..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.. +.|++|++++|+++|.+|..
T Consensus 114 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT-------TTTHHHHHHHHHCTTTBBCT
T ss_pred ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC-------CCHHHHHHHHHhCCceeecc
Confidence 777777888999999999999999877777888999999999999887644 47888999999999999974
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.4e-19 Score=176.30 Aligned_cols=151 Identities=23% Similarity=0.234 Sum_probs=70.4
Q ss_pred cEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCC
Q 037427 448 ARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSEN 527 (829)
Q Consensus 448 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 527 (829)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555555555 233322 235555555555555444444455555555555555555444444444455555555444
Q ss_pred cCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCc
Q 037427 528 NISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPN 607 (829)
Q Consensus 528 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 607 (829)
++++..+ ..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+.
T Consensus 87 ~l~~~~~------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 87 QLQSLPN------------------------GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp CCCCCCT------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCccCH------------------------hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence 4442211 1134444444444444444444444444444444444444444433333
Q ss_pred ccCCCCCCCEEECcCCcC
Q 037427 608 QLCGLKQLRLIDLSNNNL 625 (829)
Q Consensus 608 ~l~~l~~L~~L~Ls~N~l 625 (829)
.+..+++|+.|++++|++
T Consensus 143 ~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TTTTCTTCCEEECCSCCB
T ss_pred HhccCCCccEEEecCCCe
Confidence 344444444444444443
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.2e-19 Score=195.77 Aligned_cols=176 Identities=23% Similarity=0.227 Sum_probs=102.0
Q ss_pred cEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhh-cCCCCCEEEccCCcccccCCcccCCCCCCCEEECc
Q 037427 543 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIE-RLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLS 621 (829)
Q Consensus 543 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 621 (829)
+.++++++.+. .+|.. + .+.++.|++++|++++..+..+. .+++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~-~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQS-L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSS-C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCcc-C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 46666666663 34543 2 23466667777766665555555 66666666666666665555666666666666666
Q ss_pred CCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCc
Q 037427 622 NNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK 701 (829)
Q Consensus 622 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 701 (829)
+|++++..+..|..+. +|+.|+|++|+
T Consensus 97 ~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~ 123 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQ-----------------------------------------------------ALEVLLLYNNH 123 (361)
T ss_dssp SSCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred CCcCCcCCHHHhCCCc-----------------------------------------------------CCCEEECCCCc
Confidence 6666544444443332 56666666666
Q ss_pred CCCCCCcccccCCCCCEEECCCCCCCCCccccc---cccccCCeeecCCCcCcccCCcccccCCCC--cEEeccCCcce
Q 037427 702 LTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSF---SNLNQVESLDVSHNNLNGKIPPQLVELNAL--VVFSVAHNNLS 775 (829)
Q Consensus 702 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L--~~L~ls~N~l~ 775 (829)
+++..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|||++|+|++..+..+..++.+ +.|++++|++.
T Consensus 124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 665556666666666666666666664433333 445666666666666664444455555442 45555555544
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=175.88 Aligned_cols=89 Identities=20% Similarity=0.243 Sum_probs=58.8
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA 770 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 770 (829)
+|++|+|++|++++..|..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|++|+++
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 55666666666665555566666666666666666666666666666666666666666666666666666666667777
Q ss_pred CCcceeecC
Q 037427 771 HNNLSAAER 779 (829)
Q Consensus 771 ~N~l~g~ip 779 (829)
+|++++..+
T Consensus 162 ~N~l~c~c~ 170 (220)
T 2v70_A 162 ANPFNCNCY 170 (220)
T ss_dssp SCCEECSGG
T ss_pred CcCCcCCCc
Confidence 666665433
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.3e-18 Score=173.23 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=42.7
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA 770 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 770 (829)
+|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|++|+++
T Consensus 81 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 44444444444443333334455555555555555555555555555555555555555554444445555555555555
Q ss_pred CCcce
Q 037427 771 HNNLS 775 (829)
Q Consensus 771 ~N~l~ 775 (829)
+|++.
T Consensus 161 ~N~~~ 165 (220)
T 2v9t_B 161 QNPFI 165 (220)
T ss_dssp SSCEE
T ss_pred CCCcC
Confidence 55544
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=4.7e-18 Score=170.52 Aligned_cols=160 Identities=23% Similarity=0.318 Sum_probs=122.3
Q ss_pred CCCCccccceEecCCCCcEEEEEcCCCcccccccccccCcccccCCCCCcEEeCCCCCCCCcCCCccccccCCCCCCCEE
Q 037427 52 HSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQLETLHLDSNNIAGFVENGGLERLSGLSKLKLL 131 (829)
Q Consensus 52 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L 131 (829)
..+.|+|++|.|... +++ .++... .++|++|+|++|.+.+..+.. |..+++|++|
T Consensus 15 ~~~~Cs~~~v~c~~~--~l~----------------~ip~~~---~~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L 69 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSK--RHA----------------SVPAGI---PTNAQILYLHDNQITKLEPGV----FDSLINLKEL 69 (229)
T ss_dssp TTCEEETTEEECTTS--CCS----------------SCCSCC---CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEE
T ss_pred CCCEEeCCEeEccCC--CcC----------------ccCCCC---CCCCCEEEcCCCccCccCHHH----hhCccCCcEE
Confidence 567899999999742 111 111111 278899999999998877654 7888999999
Q ss_pred ECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccCCCCCCEEecCCCCCCchhhHhhhcCCCCCEEEccccc
Q 037427 132 NLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDNFTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGR 211 (829)
Q Consensus 132 ~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 211 (829)
+|++|.++...+..|.++++|++|+|++|.+++..+ ..|..+++|++|+|++|.++ .+|..+..+++|++|++++|+
T Consensus 70 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 70 YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS--AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC
T ss_pred ECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh--hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc
Confidence 999999887666778889999999999998886544 56788888888888888888 567777888888888888888
Q ss_pred CccccCCCccccCCCCCCcEEECCCccCccc
Q 037427 212 VDGALGDDEEGLCRLGHLQELHMGGNDLRGT 242 (829)
Q Consensus 212 l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~ 242 (829)
+.+..+. .+..+++|++|++++|.+.+.
T Consensus 147 l~~~~~~---~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 147 LKSIPHG---AFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCTT---TTTTCTTCCEEECTTSCBCTT
T ss_pred CCccCHH---HHhCCCCCCEEEeeCCCccCC
Confidence 8765544 567778888888888877654
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=2e-18 Score=186.21 Aligned_cols=177 Identities=22% Similarity=0.193 Sum_probs=151.3
Q ss_pred CEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccC-CCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccC
Q 037427 520 EILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFF-NRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILAN 598 (829)
Q Consensus 520 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 598 (829)
+.++++++.++ .+|..+ ...++.|+|++|++.+..+. .+. .+++|++|++++|++++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~-~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL-PSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSC-CTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC-CCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 68999999998 456543 35689999999999665544 376 899999999999999988888999999999999999
Q ss_pred CcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecc
Q 037427 599 NNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTK 678 (829)
Q Consensus 599 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (829)
|++++..+..|..+++|++|+|++|++++..|..|..+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~----------------------------------------- 136 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA----------------------------------------- 136 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----------------------------------------
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-----------------------------------------
Confidence 999988788899999999999999999987777766554
Q ss_pred cceeeecCCCCCCcceEEcCCCcCCCCCCccc---ccCCCCCEEECCCCCCCCCcccccccccc--CCeeecCCCcCcc
Q 037427 679 EISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI---GKLTNIRALNFSHNNLTGVIPVSFSNLNQ--VESLDVSHNNLNG 752 (829)
Q Consensus 679 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~LdLs~N~l~~ 752 (829)
+|+.|+|++|++++..+..| ..+++|+.|+|++|+|++..+..+..++. |+.|+|++|++..
T Consensus 137 ------------~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 137 ------------QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp ------------TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ------------cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 89999999999996554555 67999999999999999877788888887 4899999999974
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=4.3e-18 Score=169.56 Aligned_cols=155 Identities=21% Similarity=0.219 Sum_probs=120.4
Q ss_pred EEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcch-hhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcC
Q 037427 544 QVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIP-YWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSN 622 (829)
Q Consensus 544 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 622 (829)
.+++++|.+. .+|.. + .+.+++|++++|++++..+ ..+..+++|++|++++|++++..+..|.++++|++|+|++
T Consensus 15 ~l~~s~n~l~-~iP~~-~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEH-I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCSC-C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCccC-C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4555555552 34433 2 2345778888888876644 4577888888888888888877777888888888888888
Q ss_pred CcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcC
Q 037427 623 NNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKL 702 (829)
Q Consensus 623 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 702 (829)
|++++..|..|..+. +|++|+|++|++
T Consensus 91 N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N~l 117 (220)
T 2v70_A 91 NRLENVQHKMFKGLE-----------------------------------------------------SLKTLMLRSNRI 117 (220)
T ss_dssp SCCCCCCGGGGTTCS-----------------------------------------------------SCCEEECTTSCC
T ss_pred CccCccCHhHhcCCc-----------------------------------------------------CCCEEECCCCcC
Confidence 888776665555443 788888999999
Q ss_pred CCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCC
Q 037427 703 TGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIP 755 (829)
Q Consensus 703 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip 755 (829)
++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 88888889999999999999999998889999999999999999999986554
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=6.3e-18 Score=169.59 Aligned_cols=155 Identities=24% Similarity=0.291 Sum_probs=94.2
Q ss_pred ccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECc
Q 037427 542 IQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLS 621 (829)
Q Consensus 542 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 621 (829)
-+.++.+++.+ +.+|.. + .++|++|++++|++++..|..+..+++|++|+|++|++....+..|..+++|++|+|+
T Consensus 21 ~~~v~c~~~~l-~~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRH-ASVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCC-SSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCc-CccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 44566666666 345543 2 2566677777777766666666666667777777766664444556666666666666
Q ss_pred CCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCc
Q 037427 622 NNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK 701 (829)
Q Consensus 622 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 701 (829)
+|++++..+..+..+. +|+.|+|++|+
T Consensus 97 ~N~l~~l~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N~ 123 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLV-----------------------------------------------------HLKELFMCCNK 123 (229)
T ss_dssp SSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred CCcCCccChhHhCcch-----------------------------------------------------hhCeEeccCCc
Confidence 6666644443333332 56666666666
Q ss_pred CCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccC
Q 037427 702 LTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKI 754 (829)
Q Consensus 702 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~i 754 (829)
++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|+|++|++.+..
T Consensus 124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 66 55666666666666666666666555555666666666666666665443
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=6e-18 Score=176.41 Aligned_cols=80 Identities=21% Similarity=0.418 Sum_probs=42.2
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA 770 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 770 (829)
+|+.|++++|++++. ..++.+++|+.|++++|++++..| +..+++|+.|++++|++++ +| .+..+++|+.|+++
T Consensus 135 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 208 (291)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECc
Confidence 455555555555532 345555555555555555554433 5555555555555555553 22 25555555555555
Q ss_pred CCccee
Q 037427 771 HNNLSA 776 (829)
Q Consensus 771 ~N~l~g 776 (829)
+|+++.
T Consensus 209 ~n~i~~ 214 (291)
T 1h6t_A 209 SQECLN 214 (291)
T ss_dssp EEEEEC
T ss_pred CCcccC
Confidence 555543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=7.8e-18 Score=167.68 Aligned_cols=153 Identities=19% Similarity=0.229 Sum_probs=124.3
Q ss_pred cEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcC
Q 037427 543 QQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSN 622 (829)
Q Consensus 543 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 622 (829)
+.++++++.+. .+|.. + .++|+.|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 34555555552 34443 2 25788888888888877777888888999999999999887788899999999999999
Q ss_pred CcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcC
Q 037427 623 NNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKL 702 (829)
Q Consensus 623 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 702 (829)
|++++..+..|..+. +|+.|+|++|++
T Consensus 90 N~l~~l~~~~f~~l~-----------------------------------------------------~L~~L~L~~N~l 116 (220)
T 2v9t_B 90 NKITELPKSLFEGLF-----------------------------------------------------SLQLLLLNANKI 116 (220)
T ss_dssp SCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSCC
T ss_pred CcCCccCHhHccCCC-----------------------------------------------------CCCEEECCCCCC
Confidence 998855444444433 788999999999
Q ss_pred CCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcc
Q 037427 703 TGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG 752 (829)
Q Consensus 703 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 752 (829)
++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++..
T Consensus 117 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 98888999999999999999999998888889999999999999999874
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=4.8e-18 Score=177.14 Aligned_cols=188 Identities=20% Similarity=0.300 Sum_probs=116.8
Q ss_pred cEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCc
Q 037427 472 EGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNM 551 (829)
Q Consensus 472 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~ 551 (829)
..+.+..+.+.+.. .+..+++|++|++++|.+... + .+..+++|++|++++|++++..+
T Consensus 27 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~----------------- 85 (291)
T 1h6t_A 27 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP----------------- 85 (291)
T ss_dssp HHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-----------------
T ss_pred HHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc-----------------
Confidence 33445555554332 234566677777777766643 2 35666666666666666653222
Q ss_pred ccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCC
Q 037427 552 LYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPG 631 (829)
Q Consensus 552 l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 631 (829)
+..+++|++|++++|++++ ++ .+..+++|++|++++|++++. ..+..+++|+.|++++|++++. .
T Consensus 86 ---------l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~ 150 (291)
T 1h6t_A 86 ---------LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T 150 (291)
T ss_dssp ---------GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G
T ss_pred ---------cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--h
Confidence 4555666666666666654 22 266666666666666666542 3466667777777777766542 1
Q ss_pred CccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccc
Q 037427 632 CLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIG 711 (829)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~ 711 (829)
.+.. +++|+.|++++|++++..| +.
T Consensus 151 ~l~~-----------------------------------------------------l~~L~~L~L~~N~l~~~~~--l~ 175 (291)
T 1h6t_A 151 VLSR-----------------------------------------------------LTKLDTLSLEDNQISDIVP--LA 175 (291)
T ss_dssp GGGG-----------------------------------------------------CTTCSEEECCSSCCCCCGG--GT
T ss_pred hhcc-----------------------------------------------------CCCCCEEEccCCccccchh--hc
Confidence 1222 2367777777777775444 77
Q ss_pred cCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcc
Q 037427 712 KLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG 752 (829)
Q Consensus 712 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 752 (829)
.+++|+.|++++|++++. | .+..+++|+.|++++|+++.
T Consensus 176 ~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 788888888888888754 3 37778888888888888774
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=5.1e-18 Score=193.91 Aligned_cols=148 Identities=23% Similarity=0.384 Sum_probs=81.5
Q ss_pred CCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEc
Q 037427 468 CSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHL 547 (829)
Q Consensus 468 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L 547 (829)
+++|+.|++++|.+.. ++ .+..+++|+.|+|++|++.+..+ +..+++|+.|+|++|.+.+ +|....+++|+.|+|
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEe
Confidence 3344444444444432 11 23444444444444444443322 4445555555555555442 222223444444444
Q ss_pred cCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCcc
Q 037427 548 SKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFG 627 (829)
Q Consensus 548 ~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 627 (829)
++|.+.+ ++ . +..+++|+.|+|++|++++. ..+..+++|+.|+|++|++.+..| +..+++|+.|+|++|++++
T Consensus 117 s~N~l~~-l~-~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 117 EHNGISD-IN-G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp TTSCCCC-CG-G-GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred cCCCCCC-Cc-c-ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 4444432 22 1 66677778888888877754 457777788888888887775555 7777777777777777764
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=5.2e-18 Score=193.88 Aligned_cols=193 Identities=20% Similarity=0.304 Sum_probs=152.2
Q ss_pred cccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA 501 (829)
Q Consensus 422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 501 (829)
.+..+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|++.+..| +..+++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 45556666666665433 4567888888888888874 34 47788888888888888886544 7888888888888
Q ss_pred CCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcc
Q 037427 502 SNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNI 581 (829)
Q Consensus 502 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 581 (829)
+|.+.+. + .+..+++|+.|+|++|.+.+ ++....+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++.+..
T Consensus 96 ~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 96 ENKIKDL-S-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SSCCCCC-T-TSTTCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCCC-h-hhccCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCch
Confidence 8888753 3 67888888999999888875 45555788899999999988654 23888999999999999999877
Q ss_pred hhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCC
Q 037427 582 PYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIP 630 (829)
Q Consensus 582 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 630 (829)
| +..+++|+.|+|++|++++. ..+..+++|+.|+|++|++.+...
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 7 88899999999999999853 358899999999999999876433
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.4e-17 Score=162.96 Aligned_cols=154 Identities=16% Similarity=0.242 Sum_probs=117.6
Q ss_pred CCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCC
Q 037427 562 FNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNN 641 (829)
Q Consensus 562 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~ 641 (829)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..++.+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~---- 112 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT---- 112 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT----
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC----
Confidence 45567788888888877 444 5777888888888888664 234677788888888888888776666555443
Q ss_pred CCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEEC
Q 037427 642 GDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNF 721 (829)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L 721 (829)
+|++|++++|++++..|..++.+++|++|++
T Consensus 113 -------------------------------------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 113 -------------------------------------------------SLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp -------------------------------------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred -------------------------------------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 7888888888888778888889999999999
Q ss_pred CCCC-CCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCccee
Q 037427 722 SHNN-LTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSA 776 (829)
Q Consensus 722 s~N~-l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 776 (829)
++|+ ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus 144 ~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 144 SYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 9998 55 455 68888999999999999985 44 78888999999999998765
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=2.7e-20 Score=211.53 Aligned_cols=76 Identities=16% Similarity=0.129 Sum_probs=44.2
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCc-cccccccccCCeeecCCCcCcccCCcc---cccCCCCcE
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVI-PVSFSNLNQVESLDVSHNNLNGKIPPQ---LVELNALVV 766 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~LdLs~N~l~~~ip~~---l~~l~~L~~ 766 (829)
+|+.|+|++|++++ +| .++.+++|++|+|++|+|++.+ |..|+.+++|+.|+|++|++++.+|.. +..+++|++
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 45555555555553 44 5666666666666666666555 666666666666666666666544321 233566666
Q ss_pred Ee
Q 037427 767 FS 768 (829)
Q Consensus 767 L~ 768 (829)
||
T Consensus 565 L~ 566 (567)
T 1dce_A 565 IL 566 (567)
T ss_dssp EE
T ss_pred cC
Confidence 64
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=3.2e-17 Score=168.04 Aligned_cols=168 Identities=17% Similarity=0.239 Sum_probs=110.6
Q ss_pred cccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEEC
Q 037427 541 TIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDL 620 (829)
Q Consensus 541 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 620 (829)
.+..+++++|.+.+.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|+.|++
T Consensus 20 ~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCccccc---chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 3444455555553322 15566677777777777763 33 56677777777777777764433 677777777777
Q ss_pred cCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCC
Q 037427 621 SNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCN 700 (829)
Q Consensus 621 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 700 (829)
++|++++ +|.... ++|+.|++++|
T Consensus 93 ~~N~l~~-l~~~~~-------------------------------------------------------~~L~~L~L~~N 116 (263)
T 1xeu_A 93 NRNRLKN-LNGIPS-------------------------------------------------------ACLSRLFLDNN 116 (263)
T ss_dssp CSSCCSC-CTTCCC-------------------------------------------------------SSCCEEECCSS
T ss_pred CCCccCC-cCcccc-------------------------------------------------------CcccEEEccCC
Confidence 7777764 221000 26777777777
Q ss_pred cCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcceee
Q 037427 701 KLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLSAA 777 (829)
Q Consensus 701 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 777 (829)
++++ +| .+..+++|+.|+|++|++++. | .++.+++|+.|+|++|++++. ..+..+++|++|++++|++++.
T Consensus 117 ~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 117 ELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 7774 33 477777788888888877754 3 577777788888888877765 5677777778888888777765
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=1.4e-18 Score=203.76 Aligned_cols=199 Identities=17% Similarity=0.117 Sum_probs=81.9
Q ss_pred ChHHHHHHHHHhhhcCCC-CCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCcccccccccccCcccccCCCC
Q 037427 21 CLEQERSALLRLKHDFFN-DPFNLENWVDDENHSDCCKWEGVECNTSTGRVKALYLSSKRQFLYSTAGQLNASLLTPFQQ 99 (829)
Q Consensus 21 ~~~~~~~~ll~~k~~~~~-~~~~l~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~l~~ 99 (829)
..+.++++|+++..+... ....-..|. ...+..+.|.++.+. +.+|++++|.++.+.. .....
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~------------~~~~~ 192 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPT--GDSTPSGTATNSAVS--TPLTPKIELFANGKDE------------ANQAL 192 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCc--CCCCccccCCCceec--CCccceEEeeCCCCCc------------chhhH
Confidence 446688999999887641 112334675 345567889998886 4789999998775421 11233
Q ss_pred CcEEeCCCCCCCCcCCCc-----cccccCCCCCCCEEECCCCCCCccchhhhcCCCCCCEEEcCCCcCCccCCccccccC
Q 037427 100 LETLHLDSNNIAGFVENG-----GLERLSGLSKLKLLNLGRNLFNNSIFSSLAGLSSLRTLSLGYNRLKGSIDVKETLDN 174 (829)
Q Consensus 100 L~~L~Ls~n~l~~~~~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~~L~Ls~n~i~~~~p~~~~l~~ 174 (829)
|+.++|+.+.|.+..... ....+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+| ..|++
T Consensus 193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp--~~~~~ 268 (727)
T 4b8c_D 193 LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELP--AEIKN 268 (727)
T ss_dssp -----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCC--GGGGG
T ss_pred hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccC--hhhhC
Confidence 455555555544321100 0012556666666666666665 34555556666666666666666 555 45666
Q ss_pred CCCCCEEecCCCCCCchhhHhhhcCCCCCEEEcccccCccccCCCccccCCCCCCcEEECCCccCccccC
Q 037427 175 FTNLEDLTLDYSSLHISILKSIAAFTSLKRLSIQNGRVDGALGDDEEGLCRLGHLQELHMGGNDLRGTLP 244 (829)
Q Consensus 175 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~g~~p 244 (829)
+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|. .++++++|++|+|++|.+++.+|
T Consensus 269 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~---~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 269 LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW---EFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS---STTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh---hhhcCCCccEEeCCCCccCCCCh
Confidence 666666666666666 44566666666666666666654 4454 45566666666666666665554
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=7e-17 Score=157.98 Aligned_cols=133 Identities=20% Similarity=0.285 Sum_probs=95.1
Q ss_pred cCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccC
Q 037427 561 FFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHN 640 (829)
Q Consensus 561 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 640 (829)
+..+++|++|++++|.+.. +..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..++.+.
T Consensus 62 l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~--- 136 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP--- 136 (197)
T ss_dssp GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS---
T ss_pred HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC---
Confidence 5666677777777775542 23566777777777777777766677777777888888888877765555444333
Q ss_pred CCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCc-CCCCCCcccccCCCCCEE
Q 037427 641 NGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK-LTGEIPPQIGKLTNIRAL 719 (829)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~L 719 (829)
+|++|++++|+ ++ .+| .+..+++|++|
T Consensus 137 --------------------------------------------------~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 137 --------------------------------------------------KVNSIDLSYNGAIT-DIM-PLKTLPELKSL 164 (197)
T ss_dssp --------------------------------------------------SCCEEECCSCTBCC-CCG-GGGGCSSCCEE
T ss_pred --------------------------------------------------CCCEEEccCCCCcc-ccH-hhcCCCCCCEE
Confidence 67778888887 44 555 68888899999
Q ss_pred ECCCCCCCCCccccccccccCCeeecCCCcCcc
Q 037427 720 NFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNG 752 (829)
Q Consensus 720 ~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 752 (829)
++++|++++. + .+..+++|+.|++++|++.+
T Consensus 165 ~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 165 NIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred ECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 9999998864 3 68888999999999998864
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1.3e-16 Score=155.05 Aligned_cols=131 Identities=26% Similarity=0.362 Sum_probs=70.3
Q ss_pred cEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCc-ccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCC
Q 037427 568 VTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPN-QLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVG 646 (829)
Q Consensus 568 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 646 (829)
+++++++|+++ .+|..+.. +|++|++++|++++..+. .+..+++|++|+|++|++++..|..|..+.
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--------- 78 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS--------- 78 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT---------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc---------
Confidence 45666666664 34433322 566666666666544432 355555566666665555555454444332
Q ss_pred CCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCC
Q 037427 647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNL 726 (829)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 726 (829)
+|++|+|++|++++..|..|..+++|++|+|++|++
T Consensus 79 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 79 --------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114 (192)
T ss_dssp --------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 455555555555555555555555555555555555
Q ss_pred CCCccccccccccCCeeecCCCcCcccC
Q 037427 727 TGVIPVSFSNLNQVESLDVSHNNLNGKI 754 (829)
Q Consensus 727 ~~~~p~~l~~l~~L~~LdLs~N~l~~~i 754 (829)
++.+|..|..+++|+.|+|++|++++..
T Consensus 115 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 115 SCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 5555555555555555555555555443
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=1.3e-18 Score=197.68 Aligned_cols=191 Identities=19% Similarity=0.180 Sum_probs=138.1
Q ss_pred hCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCC
Q 037427 514 CQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLR 592 (829)
Q Consensus 514 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 592 (829)
...+.|+.|++++|.+. .+|..+ .+++|+.|++++|.....++.. +..+...+..|..++.+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l------------l~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL------------MRALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH------------HHhcccccCCHHHHHHHHhcc
Confidence 34566667777777665 344433 4555555555444310000000 001114455666666666666
Q ss_pred EEE-ccCC-------------cccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCcc
Q 037427 593 YLI-LANN-------------NLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRT 658 (829)
Q Consensus 593 ~L~-L~~n-------------~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (829)
.|+ ++.| .++...+ ..|+.|++++|++++ +|. ++.+.
T Consensus 413 ~L~~l~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~--------------------- 463 (567)
T 1dce_A 413 AVDPMRAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLL--------------------- 463 (567)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGT---------------------
T ss_pred cCcchhhcccchhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccc---------------------
Confidence 666 4444 3432111 258999999999986 565 55544
Q ss_pred ceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccc
Q 037427 659 TYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLN 738 (829)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 738 (829)
+|+.|+|++|+++ .+|..|+.+++|+.|+|++|+|++ +| .++.++
T Consensus 464 --------------------------------~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~ 508 (567)
T 1dce_A 464 --------------------------------LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLP 508 (567)
T ss_dssp --------------------------------TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS
T ss_pred --------------------------------cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC
Confidence 8999999999999 889999999999999999999997 67 899999
Q ss_pred cCCeeecCCCcCcccC-CcccccCCCCcEEeccCCcceeecCCC
Q 037427 739 QVESLDVSHNNLNGKI-PPQLVELNALVVFSVAHNNLSAAERNP 781 (829)
Q Consensus 739 ~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g~ip~~ 781 (829)
+|+.|+|++|+|++.+ |..+..+++|++|++++|++++.+|..
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 9999999999999887 999999999999999999999987753
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1e-16 Score=164.36 Aligned_cols=150 Identities=19% Similarity=0.313 Sum_probs=93.2
Q ss_pred CCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEE
Q 037427 466 SNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQV 545 (829)
Q Consensus 466 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 545 (829)
..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|++++ +|.... ++|++|
T Consensus 38 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~-~~L~~L 111 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPS-ACLSRL 111 (263)
T ss_dssp HHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCC-SSCCEE
T ss_pred hhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcccc-CcccEE
Confidence 344444444444444442 22 34444444444444444443322 4455555555555555543 222222 566666
Q ss_pred EccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcC
Q 037427 546 HLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNL 625 (829)
Q Consensus 546 ~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 625 (829)
++++|++.+ ++ . +..+++|++|++++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++|++
T Consensus 112 ~L~~N~l~~-~~-~-l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 112 FLDNNELRD-TD-S-LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp ECCSSCCSB-SG-G-GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred EccCCccCC-Ch-h-hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 666666644 32 2 77888888899998888865 3 578888999999999988865 6688888999999999988
Q ss_pred ccC
Q 037427 626 FGQ 628 (829)
Q Consensus 626 ~~~ 628 (829)
++.
T Consensus 185 ~~~ 187 (263)
T 1xeu_A 185 VNE 187 (263)
T ss_dssp ECC
T ss_pred cCC
Confidence 754
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1.5e-17 Score=195.08 Aligned_cols=132 Identities=21% Similarity=0.200 Sum_probs=44.1
Q ss_pred CCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccC---------CChhhhhCCCCCCEEeCCCCcCcccCCCCCCC
Q 037427 469 SRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQG---------PIPLEFCQLNYLEILDLSENNISGSLPSCSSH 539 (829)
Q Consensus 469 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 539 (829)
+.++.|++.+|.+.. .+..+ |+.++|+.|.+.+ ..+..+..++.|+.|+|++|.+.
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~--------- 237 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF--------- 237 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCS---------
T ss_pred CccceEEeeCCCCCc-chhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC---------
Confidence 456777787777764 23222 3333344433322 23444445555555555555544
Q ss_pred CcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEE
Q 037427 540 STIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLID 619 (829)
Q Consensus 540 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 619 (829)
.+|.. +..+++|++|+|++|.++ .+|..+..+++|++|+|++|.|+ .+|..+..+++|++|+
T Consensus 238 ---------------~l~~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 238 ---------------NISAN-IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY 299 (727)
T ss_dssp ---------------CCCGG-GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred ---------------CCChh-hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence 23332 234444555555555554 44444455555555555555554 4444455555555555
Q ss_pred CcCCcCccCCCCCcc
Q 037427 620 LSNNNLFGQIPGCLD 634 (829)
Q Consensus 620 Ls~N~l~~~~p~~~~ 634 (829)
|++|.|+ .+|..|+
T Consensus 300 L~~N~l~-~lp~~~~ 313 (727)
T 4b8c_D 300 FFDNMVT-TLPWEFG 313 (727)
T ss_dssp CCSSCCC-CCCSSTT
T ss_pred CCCCCCC-ccChhhh
Confidence 5555543 3343333
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=4.8e-16 Score=151.14 Aligned_cols=89 Identities=22% Similarity=0.394 Sum_probs=63.2
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA 770 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 770 (829)
+|++|+|++|++++..|..|..+++|++|+|++|+|++..|..|.++++|++|+|++|++++.+|..+..+++|++|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 66677777777776667777777777777777777776666667777777777777777777667777777777777777
Q ss_pred CCcceeecC
Q 037427 771 HNNLSAAER 779 (829)
Q Consensus 771 ~N~l~g~ip 779 (829)
+|++++..+
T Consensus 135 ~N~l~c~c~ 143 (192)
T 1w8a_A 135 SNPFNCNCH 143 (192)
T ss_dssp TCCBCCSGG
T ss_pred CCCccCcCc
Confidence 777766544
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=9.7e-16 Score=145.65 Aligned_cols=134 Identities=23% Similarity=0.280 Sum_probs=94.9
Q ss_pred CCCCEEEccCCccc-ccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCcc
Q 037427 589 IRLRYLILANNNLE-GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSIL 667 (829)
Q Consensus 589 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (829)
++|++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------- 69 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK-------------------------------- 69 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC--------------------------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc--------------------------------
Confidence 56666666666665 55666666667777777777776543 22222
Q ss_pred ccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCc-cccccccccCCeeecC
Q 037427 668 EKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVI-PVSFSNLNQVESLDVS 746 (829)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~LdLs 746 (829)
+++|++|++++|++++.+|..+..+++|++|+|++|++++.. +..+..+++|+.|+++
T Consensus 70 ---------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~ 128 (168)
T 2ell_A 70 ---------------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128 (168)
T ss_dssp ---------------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECC
T ss_pred ---------------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEee
Confidence 236777777777777667777777888888888888888643 2678888888888888
Q ss_pred CCcCcccCC---cccccCCCCcEEeccCCcceee
Q 037427 747 HNNLNGKIP---PQLVELNALVVFSVAHNNLSAA 777 (829)
Q Consensus 747 ~N~l~~~ip---~~l~~l~~L~~L~ls~N~l~g~ 777 (829)
+|++++..+ ..+..+++|++|++++|.+...
T Consensus 129 ~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 129 NCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp SSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 888886554 4778888888888888877643
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=6.8e-16 Score=146.71 Aligned_cols=138 Identities=23% Similarity=0.298 Sum_probs=107.9
Q ss_pred CCCccEEEccCCcCC-CcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCC
Q 037427 564 RSSIVTLDLSYNSFS-GNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNG 642 (829)
Q Consensus 564 l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~ 642 (829)
.++|+.|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------ 94 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL------ 94 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC------
Confidence 467888888888887 56777777888888888888888754 677888888888888888876655544333
Q ss_pred CCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCC-CcccccCCCCCEEEC
Q 037427 643 DNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEI-PPQIGKLTNIRALNF 721 (829)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~L 721 (829)
++|+.|++++|++++.. +..+..+++|++|++
T Consensus 95 -----------------------------------------------~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 95 -----------------------------------------------PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp -----------------------------------------------TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred -----------------------------------------------CCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 37888888888888542 277889999999999
Q ss_pred CCCCCCCCcc---ccccccccCCeeecCCCcCcccCCcc
Q 037427 722 SHNNLTGVIP---VSFSNLNQVESLDVSHNNLNGKIPPQ 757 (829)
Q Consensus 722 s~N~l~~~~p---~~l~~l~~L~~LdLs~N~l~~~ip~~ 757 (829)
++|++++..+ ..+..+++|+.||+++|.+. .+|++
T Consensus 128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred eCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 9999997665 57888999999999999987 55543
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.1e-15 Score=142.02 Aligned_cols=128 Identities=21% Similarity=0.273 Sum_probs=99.7
Q ss_pred CCCCEEEccCCccc-ccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCcc
Q 037427 589 IRLRYLILANNNLE-GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSIL 667 (829)
Q Consensus 589 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (829)
++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..+..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------- 62 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK-------------------------------- 62 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC--------------------------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc--------------------------------
Confidence 56777777777776 56777777778888888888877644 22222
Q ss_pred ccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCC-ccccccccccCCeeecC
Q 037427 668 EKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGV-IPVSFSNLNQVESLDVS 746 (829)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~LdLs 746 (829)
+++|++|++++|++++.+|..++.+++|++|++++|++++. .|..++.+++|++|+++
T Consensus 63 ---------------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 63 ---------------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp ---------------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred ---------------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence 33788888888888877888888899999999999999874 45788899999999999
Q ss_pred CCcCcccCC---cccccCCCCcEEeccC
Q 037427 747 HNNLNGKIP---PQLVELNALVVFSVAH 771 (829)
Q Consensus 747 ~N~l~~~ip---~~l~~l~~L~~L~ls~ 771 (829)
+|++++..+ ..+..+++|++|++++
T Consensus 122 ~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 122 NCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999987665 5788899999998864
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=3.5e-15 Score=144.90 Aligned_cols=62 Identities=29% Similarity=0.354 Sum_probs=32.3
Q ss_pred cEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCc
Q 037427 568 VTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCL 633 (829)
Q Consensus 568 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 633 (829)
+++++++|.++ .+|..+. ++|++|++++|+++ .+|..+.++++|++|+|++|++++..|..|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f 74 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSF 74 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHc
Confidence 45566666655 3333322 35566666666655 444555555555555555555554433333
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=7.1e-16 Score=164.08 Aligned_cols=76 Identities=8% Similarity=0.022 Sum_probs=48.0
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCC-EEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEe
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIR-ALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFS 768 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 768 (829)
+|+.|+|++| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++...+..|.++++|+.++
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 4555555555 4444555666666666 666666 56655556666677777777766766655556666666666654
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=4.9e-15 Score=142.09 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=44.7
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA 770 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 770 (829)
+|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 34444444444443333444555555555555555554444445555555555555555554333334455555555555
Q ss_pred CCcceeecC
Q 037427 771 HNNLSAAER 779 (829)
Q Consensus 771 ~N~l~g~ip 779 (829)
+|++++..|
T Consensus 133 ~N~~~~~~~ 141 (177)
T 2o6r_A 133 TNPWDCSCP 141 (177)
T ss_dssp SSCBCCCHH
T ss_pred CCCeeccCc
Confidence 555554443
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.3e-15 Score=141.57 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=100.1
Q ss_pred CCCccEEEccCCcCC-CcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCC
Q 037427 564 RSSIVTLDLSYNSFS-GNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNG 642 (829)
Q Consensus 564 l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~ 642 (829)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~----- 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP----- 88 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-----
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-----
Confidence 356778888888877 56777777788888888888888754 6677888888888888888766555443332
Q ss_pred CCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCC-CCcccccCCCCCEEEC
Q 037427 643 DNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE-IPPQIGKLTNIRALNF 721 (829)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~L 721 (829)
+|++|++++|++++. .|..++.+++|++|++
T Consensus 89 ------------------------------------------------~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 89 ------------------------------------------------NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp ------------------------------------------------TCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred ------------------------------------------------CCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 788888888888863 3478899999999999
Q ss_pred CCCCCCCCcc---ccccccccCCeeecCC
Q 037427 722 SHNNLTGVIP---VSFSNLNQVESLDVSH 747 (829)
Q Consensus 722 s~N~l~~~~p---~~l~~l~~L~~LdLs~ 747 (829)
++|++++..+ ..+..+++|+.||+++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999997766 5788899999999874
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=1.8e-15 Score=160.90 Aligned_cols=195 Identities=14% Similarity=0.047 Sum_probs=123.1
Q ss_pred CCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcC----CCCcccccCCCCCC
Q 037427 420 CFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNL----YGNIPARLGNLSSL 495 (829)
Q Consensus 420 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L 495 (829)
|++|+.+++.+ .++......|.++++|+.+++++|.+....+.+|.++.++..+....+.. .......|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77777777777 66666666777777777777777777666666777776666666655321 11122234344444
Q ss_pred C--------------------------EEEccCCcccCCChhhh-hCCCCCCEEeCCCCcCcccCCCCC-CCCcccEEEc
Q 037427 496 N--------------------------DIMMASNHLQGPIPLEF-CQLNYLEILDLSENNISGSLPSCS-SHSTIQQVHL 547 (829)
Q Consensus 496 ~--------------------------~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L 547 (829)
+ .+.+.++-.. .....+ ..+++|+.+++++|+++...+..+ .+.+|+.+++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 4 2322222110 001111 136778888888777774444445 6777777777
Q ss_pred cCCcccCcCCccccCCCCCcc-EEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEE
Q 037427 548 SKNMLYGPLKYGTFFNRSSIV-TLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLID 619 (829)
Q Consensus 548 ~~n~l~~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 619 (829)
.+| + ..++..+|.++++|+ .+++.+ .++...+.+|.++++|+.+++++|+++...+.+|.++++|+.++
T Consensus 258 ~~n-i-~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 258 PHN-L-KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTT-C-CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred Ccc-c-ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 776 3 456666677777777 777777 66656667777777788887777777766666777777777765
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=8.7e-15 Score=142.13 Aligned_cols=86 Identities=22% Similarity=0.309 Sum_probs=58.8
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA 770 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 770 (829)
+|+.|+|++|++++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 66667777777776666667777777777777777776666667777777777777777765555556667777777777
Q ss_pred CCccee
Q 037427 771 HNNLSA 776 (829)
Q Consensus 771 ~N~l~g 776 (829)
+|++.+
T Consensus 135 ~N~~~C 140 (193)
T 2wfh_A 135 ANPLYC 140 (193)
T ss_dssp SSCEEC
T ss_pred CCCeec
Confidence 776654
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.6e-14 Score=138.52 Aligned_cols=133 Identities=23% Similarity=0.240 Sum_probs=98.7
Q ss_pred ccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCC
Q 037427 567 IVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVG 646 (829)
Q Consensus 567 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 646 (829)
.+.+++++++++. +|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+.
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------- 76 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT--------- 76 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT---------
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC---------
Confidence 3556666666663 33322 25777777777777766666677778888888888887755444444433
Q ss_pred CCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCC
Q 037427 647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNL 726 (829)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 726 (829)
+|++|++++|++++..+..+..+++|++|++++|++
T Consensus 77 --------------------------------------------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 77 --------------------------------------------KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence 778888888888877777788899999999999999
Q ss_pred CCCccccccccccCCeeecCCCcCcccCC
Q 037427 727 TGVIPVSFSNLNQVESLDVSHNNLNGKIP 755 (829)
Q Consensus 727 ~~~~p~~l~~l~~L~~LdLs~N~l~~~ip 755 (829)
++..+..+..+++|+.|+|++|++++..|
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 113 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred eEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 97777677889999999999999987655
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=1.3e-13 Score=149.67 Aligned_cols=265 Identities=15% Similarity=0.153 Sum_probs=182.3
Q ss_pred ccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEe
Q 037427 444 LRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILD 523 (829)
Q Consensus 444 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 523 (829)
+..++.+.+.++ ++.....+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+......+|.++++|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 456667776653 443555667764 6888888766 554555667664 688888875 56556667788888888888
Q ss_pred CCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccc
Q 037427 524 LSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEG 603 (829)
Q Consensus 524 Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 603 (829)
+++|+++......+.+.+|+.+.+..+ + ..++..+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++.
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred cCCCcceEechhhEeecccCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence 888888765555666788888888754 3 4677777899999999999874 55566667777 789999994 55665
Q ss_pred cCCcccCCCCCCCEEECcCCcCcc-----CCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecc
Q 037427 604 EVPNQLCGLKQLRLIDLSNNNLFG-----QIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTK 678 (829)
Q Consensus 604 ~~~~~l~~l~~L~~L~Ls~N~l~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (829)
....+|.++++|+.+++.+|.+.. ..+.+|.
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~-------------------------------------------- 297 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE-------------------------------------------- 297 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT--------------------------------------------
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh--------------------------------------------
Confidence 667888899999999988877641 1111222
Q ss_pred cceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCccc
Q 037427 679 EISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQL 758 (829)
Q Consensus 679 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l 758 (829)
.+++|+.++|. +.++..-..+|.++++|+.++|..| ++...+.+|.++ +|+.+++++|.+....+..|
T Consensus 298 ---------~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F 365 (401)
T 4fdw_A 298 ---------GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW 365 (401)
T ss_dssp ---------TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred ---------CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc
Confidence 23367777777 3466555667777778888877544 665666777777 78888887777765555556
Q ss_pred ccCC-CCcEEeccCCcc
Q 037427 759 VELN-ALVVFSVAHNNL 774 (829)
Q Consensus 759 ~~l~-~L~~L~ls~N~l 774 (829)
..++ .++.+.+..+.+
T Consensus 366 ~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 366 YGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCSCTTCCEEEECGGGH
T ss_pred cCCCCCccEEEeCHHHH
Confidence 6553 556666655543
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=3.8e-14 Score=135.61 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=56.4
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccc--cccccccCCeeecCCCcCcccCCcc----cccCCCC
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPV--SFSNLNQVESLDVSHNNLNGKIPPQ----LVELNAL 764 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~LdLs~N~l~~~ip~~----l~~l~~L 764 (829)
+|+.|++++|++++..|..+..+++|++|+|++|+++ .+|. .+..+++|+.|++++|+++ .+|.. +..+++|
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV 142 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence 4555666666666444444577777777777777775 4454 6777777777777777776 45553 7777777
Q ss_pred cEEeccCCccee
Q 037427 765 VVFSVAHNNLSA 776 (829)
Q Consensus 765 ~~L~ls~N~l~g 776 (829)
++||+++|.+..
T Consensus 143 ~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 143 RVLDFQKVKLKE 154 (176)
T ss_dssp SEETTEECCHHH
T ss_pred ceeCCCcCCHHH
Confidence 888777776653
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.50 E-value=6.8e-13 Score=143.93 Aligned_cols=251 Identities=13% Similarity=0.147 Sum_probs=147.9
Q ss_pred cccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCC
Q 037427 412 FPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGN 491 (829)
Q Consensus 412 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 491 (829)
++...|.++ +|+.+.+..+ ++......|.++ +|+.+.+.. .++...+.+|.+|++|+.+++.+|+++......|.
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~- 201 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV- 201 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-
T ss_pred ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-
Confidence 344445554 5777776654 544444555553 566666664 44444455666666666666666666644334444
Q ss_pred CCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEEE
Q 037427 492 LSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTLD 571 (829)
Q Consensus 492 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 571 (829)
+.+|+.+.+..+ +......+|.++++|+.+++..+ ++ .++..+|.+ .+|+.++
T Consensus 202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~------------------------~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS------------------------TIGQEAFRE-SGITTVK 254 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC------------------------EECTTTTTT-CCCSEEE
T ss_pred ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc------------------------Ccccccccc-CCccEEE
Confidence 456666666533 44444455666666666666543 22 233333444 4555555
Q ss_pred ccCCcCCCcchhhhhcCCCCCEEEccCCccc-----ccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCC
Q 037427 572 LSYNSFSGNIPYWIERLIRLRYLILANNNLE-----GEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVG 646 (829)
Q Consensus 572 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 646 (829)
+. +.++.....+|.++++|+.+++.+|.+. ...+.+|.++++|+.+++.+ .++..-...|.++
T Consensus 255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c---------- 322 (401)
T 4fdw_A 255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGN---------- 322 (401)
T ss_dssp EE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC----------
T ss_pred eC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCC----------
Confidence 52 3344444555666666666666655543 34455667777777777763 3443223333332
Q ss_pred CCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCC
Q 037427 647 SSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNL 726 (829)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 726 (829)
++|+.++|..| ++..-+.+|.++ +|+.+++++|.+
T Consensus 323 -------------------------------------------~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 323 -------------------------------------------RKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp -------------------------------------------CSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred -------------------------------------------CCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 26667777544 554566778888 899999999988
Q ss_pred CCCccccccccc-cCCeeecCCCcCc
Q 037427 727 TGVIPVSFSNLN-QVESLDVSHNNLN 751 (829)
Q Consensus 727 ~~~~p~~l~~l~-~L~~LdLs~N~l~ 751 (829)
....+..|.+++ +++.|++..+.+.
T Consensus 358 ~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 358 PQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cccccccccCCCCCccEEEeCHHHHH
Confidence 877777787774 7888888877654
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=4.4e-14 Score=135.16 Aligned_cols=133 Identities=19% Similarity=0.168 Sum_probs=106.3
Q ss_pred cCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccC
Q 037427 561 FFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHN 640 (829)
Q Consensus 561 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 640 (829)
+.++++|++|++++|+++. +|......++|++|++++|.+++. ..+..+++|++|++++|++++..|..+..+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--- 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP--- 88 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT---
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC---
Confidence 5677888899999988884 354333344899999999999864 6788899999999999999865444334433
Q ss_pred CCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCc--ccccCCCCCE
Q 037427 641 NGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP--QIGKLTNIRA 718 (829)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~--~l~~l~~L~~ 718 (829)
+|+.|++++|+++ .+|. .+..+++|+.
T Consensus 89 --------------------------------------------------~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 89 --------------------------------------------------DLTELILTNNSLV-ELGDLDPLASLKSLTY 117 (176)
T ss_dssp --------------------------------------------------TCCEEECCSCCCC-CGGGGGGGGGCTTCCE
T ss_pred --------------------------------------------------CCCEEECCCCcCC-cchhhHhhhcCCCCCE
Confidence 7889999999996 5665 7899999999
Q ss_pred EECCCCCCCCCcccc----ccccccCCeeecCCCcCc
Q 037427 719 LNFSHNNLTGVIPVS----FSNLNQVESLDVSHNNLN 751 (829)
Q Consensus 719 L~Ls~N~l~~~~p~~----l~~l~~L~~LdLs~N~l~ 751 (829)
|++++|.++ .+|.. +..+++|+.||+++|.+.
T Consensus 118 L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 118 LCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999998 45654 889999999999999876
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=2.3e-16 Score=154.45 Aligned_cols=151 Identities=24% Similarity=0.331 Sum_probs=108.9
Q ss_pred CCccEEEccCCcCCCcchh------hhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCc
Q 037427 565 SSIVTLDLSYNSFSGNIPY------WIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSL 638 (829)
Q Consensus 565 ~~L~~L~Ls~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 638 (829)
..++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~-- 92 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA-- 92 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH--
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC--
Confidence 4445555555555554444 78888888888888888875 56 7778888888888888876 444433222
Q ss_pred cCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCE
Q 037427 639 HNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRA 718 (829)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~ 718 (829)
++|+.|++++|++++ +| .+..+++|++
T Consensus 93 ---------------------------------------------------~~L~~L~L~~N~l~~-l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 93 ---------------------------------------------------DTLEELWISYNQIAS-LS-GIEKLVNLRV 119 (198)
T ss_dssp ---------------------------------------------------HHCSEEEEEEEECCC-HH-HHHHHHHSSE
T ss_pred ---------------------------------------------------CcCCEEECcCCcCCc-CC-ccccCCCCCE
Confidence 267788888888885 45 5788888888
Q ss_pred EECCCCCCCCCcc-ccccccccCCeeecCCCcCcccCCcc----------cccCCCCcEEeccCCcce
Q 037427 719 LNFSHNNLTGVIP-VSFSNLNQVESLDVSHNNLNGKIPPQ----------LVELNALVVFSVAHNNLS 775 (829)
Q Consensus 719 L~Ls~N~l~~~~p-~~l~~l~~L~~LdLs~N~l~~~ip~~----------l~~l~~L~~L~ls~N~l~ 775 (829)
|++++|++++..+ ..+..+++|+.|++++|++++.+|.. +..+++|++|| +|+++
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8888888885433 46788888888888888888776653 77788888876 66655
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=1.3e-12 Score=142.41 Aligned_cols=244 Identities=11% Similarity=0.084 Sum_probs=112.4
Q ss_pred cChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCCCEEEccCCcccccCchhhhh
Q 037427 331 FPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHLDALHVSKNFFQGNIPLEIGV 410 (829)
Q Consensus 331 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ip~~~~~ 410 (829)
-..+|.++.+|+.+.+..+ ++ .++...|.++++|+.+++..+ ++.....+|..+.+|+.+.+..+
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~------------ 127 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM------------ 127 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT------------
T ss_pred HHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc------------
Confidence 3345666667777766533 43 455555666666666666543 33333444555555544433322
Q ss_pred ccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccC
Q 037427 411 YFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLG 490 (829)
Q Consensus 411 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 490 (829)
+.......|.++..++....... ......+|.++++|+.+.+.++. .......|.
T Consensus 128 ----------------------l~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~ 182 (394)
T 4fs7_A 128 ----------------------LKSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFS 182 (394)
T ss_dssp ----------------------CCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTT
T ss_pred ----------------------eeeecceeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceecccccc
Confidence 11111222222222221111111 11222345555556666555432 213334555
Q ss_pred CCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccCCcccCcCCccccCCCCCccEE
Q 037427 491 NLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSKNMLYGPLKYGTFFNRSSIVTL 570 (829)
Q Consensus 491 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 570 (829)
++.+|+.+.+..+ ++......|.++..|+.+.+..+... .....+....|+.+.+.... ..+...+|.++..++.+
T Consensus 183 ~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~ 258 (394)
T 4fs7_A 183 GCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESI 258 (394)
T ss_dssp TCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEE
T ss_pred CCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCCc--eecccccccccccceeE
Confidence 5555655555444 33233345555556655555444322 11122244455555554322 12333445666666666
Q ss_pred EccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcC
Q 037427 571 DLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSN 622 (829)
Q Consensus 571 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 622 (829)
.+..+... .....+..+..++.+....+.+ ....+..+.+|+.+.+..
T Consensus 259 ~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 259 SIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp EECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECT
T ss_pred EcCCCcce-eeccccccccccceeccCceee---cccccccccccccccccc
Confidence 66554322 3344455556666655554432 223455555666655543
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.44 E-value=2.8e-12 Score=139.83 Aligned_cols=263 Identities=14% Similarity=0.090 Sum_probs=145.2
Q ss_pred CCCCCcCccEEEccCCCCCCCcChhhhCCCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCC
Q 037427 310 STTPKFQLESVSLSGSDIHATFPKFLYNQHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWH 389 (829)
Q Consensus 310 ~~~~~~~L~~L~Ls~~~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 389 (829)
++....+|+++.|.. .++..-..+|.++++|+.+++.++ ++ .++...|.++++|+.+.+..+ +......+|..+..
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 344567899999975 466666778999999999999765 44 566666888999998777654 33333445554433
Q ss_pred CCEEEccCCcccccCchhhhhccccccccCCCcccEEEcccccccccCccccccccCCcEEecccccCCCccCccCCCCC
Q 037427 390 LDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCS 469 (829)
Q Consensus 390 L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 469 (829)
++........ .+....|.+|.+|+.+.+.++. .......|.++++|+.+.+..+ ++.....+|.++.
T Consensus 142 ~~~~~~~~~~-----------~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~ 208 (394)
T 4fs7_A 142 KEITIPEGVT-----------VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECI 208 (394)
T ss_dssp SEEECCTTCC-----------EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCT
T ss_pred cccccCcccc-----------ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccc
Confidence 2222211111 1233445566777777775442 2233445566666666666554 3323345566666
Q ss_pred CCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCCcCcccCCCCCCCCcccEEEccC
Q 037427 470 RLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSENNISGSLPSCSSHSTIQQVHLSK 549 (829)
Q Consensus 470 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~ 549 (829)
.|+.+.+..+... +........+|+.+.+... ++......|..+..++.+.+..+
T Consensus 209 ~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~---------------------- 263 (394)
T 4fs7_A 209 LLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN---------------------- 263 (394)
T ss_dssp TCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT----------------------
T ss_pred ccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC----------------------
Confidence 6666665544321 1222233345555554332 11122233444444544444433
Q ss_pred CcccCcCCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECc
Q 037427 550 NMLYGPLKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLS 621 (829)
Q Consensus 550 n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 621 (829)
.. .+....|..+..++.+....+.+. ...+..+.+|+.+.+..+ ++.....+|.++.+|+.+++.
T Consensus 264 -~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 264 -KL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp -TC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred -cc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence 22 233334666666666666554322 234556667777766544 443445566666677666654
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=3.5e-13 Score=127.84 Aligned_cols=89 Identities=22% Similarity=0.241 Sum_probs=83.0
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA 770 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 770 (829)
.++.|+|++|++++..|..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..|..|..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 78899999999999889999999999999999999998888889999999999999999998777789999999999999
Q ss_pred CCcceeecC
Q 037427 771 HNNLSAAER 779 (829)
Q Consensus 771 ~N~l~g~ip 779 (829)
+|++++..+
T Consensus 111 ~N~~~c~c~ 119 (170)
T 3g39_A 111 NNPWDCACS 119 (170)
T ss_dssp SSCBCTTBG
T ss_pred CCCCCCCch
Confidence 999987654
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=1e-12 Score=124.53 Aligned_cols=108 Identities=21% Similarity=0.287 Sum_probs=81.2
Q ss_pred CCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCccccc
Q 037427 591 LRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKE 670 (829)
Q Consensus 591 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (829)
.+.+++++|.++ .+|..+ .++|++|+|++|+|++..|..|..+.
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~--------------------------------- 54 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLT--------------------------------- 54 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT---------------------------------
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcc---------------------------------
Confidence 356667777666 455444 26677777777777766666555544
Q ss_pred cceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcC
Q 037427 671 ESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNL 750 (829)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l 750 (829)
+|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++
T Consensus 55 --------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 55 --------------------QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp --------------------TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred --------------------cCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 677788888888866677778889999999999999987777888899999999999998
Q ss_pred cccC
Q 037427 751 NGKI 754 (829)
Q Consensus 751 ~~~i 754 (829)
+...
T Consensus 115 ~c~c 118 (170)
T 3g39_A 115 DCAC 118 (170)
T ss_dssp CTTB
T ss_pred CCCc
Confidence 8654
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=8.7e-13 Score=125.50 Aligned_cols=89 Identities=25% Similarity=0.305 Sum_probs=81.5
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA 770 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 770 (829)
.|+.|+|++|++++..|..|+.+++|++|+|++|+|++..+..|..+++|+.|||++|+|++..+..|..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 78899999999999889999999999999999999998777778999999999999999997766679999999999999
Q ss_pred CCcceeecC
Q 037427 771 HNNLSAAER 779 (829)
Q Consensus 771 ~N~l~g~ip 779 (829)
+|++....+
T Consensus 114 ~N~~~c~~~ 122 (174)
T 2r9u_A 114 NNPWDCECR 122 (174)
T ss_dssp SSCBCTTBG
T ss_pred CCCcccccc
Confidence 999986543
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=4.5e-15 Score=145.19 Aligned_cols=138 Identities=21% Similarity=0.227 Sum_probs=119.6
Q ss_pred hhcCCCCCEEEccCCcccccCCc------ccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCcc
Q 037427 585 IERLIRLRYLILANNNLEGEVPN------QLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRT 658 (829)
Q Consensus 585 l~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (829)
+.....++.++++.+.+++.+|. .+..+++|++|++++|++++ +| .+..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~--------------------- 70 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGME--------------------- 70 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHT---------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCC---------------------
Confidence 55677888889999999888776 88999999999999999986 55 444433
Q ss_pred ceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccc
Q 037427 659 TYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLN 738 (829)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 738 (829)
+|+.|++++|+++ .+|..+..+++|++|++++|++++ +| .+..++
T Consensus 71 --------------------------------~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~ 115 (198)
T 1ds9_A 71 --------------------------------NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV 115 (198)
T ss_dssp --------------------------------TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred --------------------------------CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC
Confidence 8999999999999 788888889999999999999996 55 689999
Q ss_pred cCCeeecCCCcCcccCC-cccccCCCCcEEeccCCcceeecCC
Q 037427 739 QVESLDVSHNNLNGKIP-PQLVELNALVVFSVAHNNLSAAERN 780 (829)
Q Consensus 739 ~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~ls~N~l~g~ip~ 780 (829)
+|+.|++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 99999999999996433 5789999999999999999998876
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=2.3e-12 Score=122.54 Aligned_cols=106 Identities=23% Similarity=0.308 Sum_probs=78.4
Q ss_pred CEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccCCCccCCCCCCCCCCCCCCCCCccceecCCCcccccc
Q 037427 592 RYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDNTSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEE 671 (829)
Q Consensus 592 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (829)
+.+++++|+++ .+|..+. ++|++|+|++|++++..|..|..+.
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~---------------------------------- 57 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLV---------------------------------- 57 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT----------------------------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCc----------------------------------
Confidence 56666666665 5555443 6677777777777766666555443
Q ss_pred ceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCc
Q 037427 672 SIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN 751 (829)
Q Consensus 672 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 751 (829)
+|+.|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++.
T Consensus 58 -------------------~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 58 -------------------NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -------------------CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6777788888887666666788889999999999998776667888899999999999888
Q ss_pred cc
Q 037427 752 GK 753 (829)
Q Consensus 752 ~~ 753 (829)
..
T Consensus 119 c~ 120 (174)
T 2r9u_A 119 CE 120 (174)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=3e-12 Score=137.20 Aligned_cols=110 Identities=14% Similarity=0.190 Sum_probs=91.1
Q ss_pred eEEcCCC-cCCCCCCcccccCCCCCEEECCC-CCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccC
Q 037427 694 GVDLSCN-KLTGEIPPQIGKLTNIRALNFSH-NNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAH 771 (829)
Q Consensus 694 ~L~Ls~N-~l~~~ip~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 771 (829)
.++++++ +++ .+|. +..+++|+.|+|++ |+|++..|..|+++++|+.|||++|+|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 5789988 898 5888 99999999999996 999988888999999999999999999999999999999999999999
Q ss_pred CcceeecCCCCCCCCCCcCCCCCCccccccccCCCCCCcccchhhhcCCccccccccC
Q 037427 772 NNLSAAERNPGPYCLKTWPCNGDYQCRIDCSTMYNGEGHCKYVTAIYAPHTCICKYKC 829 (829)
Q Consensus 772 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~C~c~~~~ 829 (829)
|+|++..|..... . ....+++..|+|+|||++.|
T Consensus 90 N~l~~~~~~~~~~--~----------------------~L~~l~l~~N~~~c~c~l~~ 123 (347)
T 2ifg_A 90 NALESLSWKTVQG--L----------------------SLQELVLSGNPLHCSCALRW 123 (347)
T ss_dssp SCCSCCCSTTTCS--C----------------------CCCEEECCSSCCCCCGGGHH
T ss_pred CccceeCHHHccc--C----------------------CceEEEeeCCCccCCCccHH
Confidence 9999765542110 0 02346777888999998654
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=3.4e-13 Score=144.85 Aligned_cols=87 Identities=22% Similarity=0.146 Sum_probs=46.2
Q ss_pred CcccEEEccCCcccCcCCcc---ccC-CCCCccEEEccCCcCCCcchhhh-hcCCCCCEEEccCCcccccCCccc-----
Q 037427 540 STIQQVHLSKNMLYGPLKYG---TFF-NRSSIVTLDLSYNSFSGNIPYWI-ERLIRLRYLILANNNLEGEVPNQL----- 609 (829)
Q Consensus 540 ~~L~~L~L~~n~l~~~~~~~---~l~-~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l----- 609 (829)
+.|+.|++++|.++...... .+. ..++|++|+|++|.+++.....+ ..+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45667777777664321111 011 22567777777776654433332 234566677777776654333322
Q ss_pred CCCCCCCEEECcCCcCc
Q 037427 610 CGLKQLRLIDLSNNNLF 626 (829)
Q Consensus 610 ~~l~~L~~L~Ls~N~l~ 626 (829)
...++|+.|+|++|.++
T Consensus 152 ~~~~~L~~L~Ls~n~l~ 168 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLT 168 (372)
T ss_dssp STTCCCCEEECCSSCCH
T ss_pred hcCCccceeeCCCCCCC
Confidence 23456666666666664
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.21 E-value=6.6e-10 Score=120.99 Aligned_cols=138 Identities=10% Similarity=0.123 Sum_probs=84.9
Q ss_pred CcCCCCCCCCCCC-CCCEEEccCCcccccCchhhhhccccccccCCCcccEEEccccc---ccccCccccccccCCcEEe
Q 037427 376 LSGPFQTPIQPHW-HLDALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENS---LHGQLFSKKNYLRKLARLH 451 (829)
Q Consensus 376 l~~~~~~~~~~l~-~L~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~ 451 (829)
++.+...+|..+. .|+.+.+..+ ++ .+...+|.+|.+|+.+.+..|. ++......|..+.+|+.+.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt---------~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~ 120 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VT---------EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIP 120 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CC---------EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCG
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-ee---------EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeec
Confidence 3444456676664 5777776543 22 1455667788888888887763 5545556677777777777
Q ss_pred cccccCCCccCccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhhCCCCCCEEeCCCC
Q 037427 452 LDANYFTGEIPKSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFCQLNYLEILDLSEN 527 (829)
Q Consensus 452 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 527 (829)
+..+ ++.....+|.++.+|+.+.+..+. .......|..+.+|+.+.+..+ ++.....+|.. ..|+.+.+..+
T Consensus 121 ~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~ 192 (394)
T 4gt6_A 121 ILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK 192 (394)
T ss_dssp GGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT
T ss_pred cCCc-cceehhhhhhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc
Confidence 6654 333445667777888888876542 3244456777777777777654 33233344433 45777766554
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=4.6e-11 Score=127.91 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=78.1
Q ss_pred CcceEEcCC-CcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEec
Q 037427 691 KMYGVDLSC-NKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSV 769 (829)
Q Consensus 691 ~L~~L~Ls~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 769 (829)
+|+.|+|++ |+|++..|..|+.+++|+.|+|++|+|++..|..|.++++|+.|||++|+|++..|..+..+. |+.|++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 789999996 999988889999999999999999999999999999999999999999999976666676665 999999
Q ss_pred cCCcceee
Q 037427 770 AHNNLSAA 777 (829)
Q Consensus 770 s~N~l~g~ 777 (829)
++|++...
T Consensus 111 ~~N~~~c~ 118 (347)
T 2ifg_A 111 SGNPLHCS 118 (347)
T ss_dssp CSSCCCCC
T ss_pred eCCCccCC
Confidence 99998753
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.17 E-value=1.7e-09 Score=117.73 Aligned_cols=78 Identities=13% Similarity=0.196 Sum_probs=36.2
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEecc
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVA 770 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 770 (829)
+|+.++|..+ ++.+-..+|.++++|+.+.+..+ ++..-..+|.++++|+.+++.++.... ..+.....|+.+.+.
T Consensus 312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVA 386 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC------
T ss_pred CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeC
Confidence 3444444332 33233445666666666666433 554445566666666666666655431 344455566666555
Q ss_pred CCc
Q 037427 771 HNN 773 (829)
Q Consensus 771 ~N~ 773 (829)
.|.
T Consensus 387 ~~~ 389 (394)
T 4gt6_A 387 PGS 389 (394)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=1.5e-12 Score=139.76 Aligned_cols=187 Identities=18% Similarity=0.130 Sum_probs=93.3
Q ss_pred CccEEEccCCCCCCCcChhhhC-----CCCcCEEEcCCCCCCCCCchHHhhcCCCCCEEEccCCcCcCCCCCCCCCCCCC
Q 037427 316 QLESVSLSGSDIHATFPKFLYN-----QHDLELVDFSDSNLKGEFPNWLLKNNPNLSTLVLRNNSLSGPFQTPIQPHWHL 390 (829)
Q Consensus 316 ~L~~L~Ls~~~l~~~~p~~l~~-----~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 390 (829)
.|++|+|++|.++......+.. .++|++|+|++|.+.+.....+...+++|++|+|++|.++
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~------------- 139 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG------------- 139 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC-------------
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC-------------
Confidence 4555555555554432222221 2466666666666654333333333445555555555544
Q ss_pred CEEEccCCcccccCchhhhhccccccccCCCcccEEEccccccccc----CccccccccCCcEEecccccCCCc----cC
Q 037427 391 DALHVSKNFFQGNIPLEIGVYFPSHLAMGCFNLEYLVLSENSLHGQ----LFSKKNYLRKLARLHLDANYFTGE----IP 462 (829)
Q Consensus 391 ~~L~ls~n~l~~~ip~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~ 462 (829)
+.....+...+. ...++|++|+|++|.++.. ++..+...++|++|+|++|.+++. ++
T Consensus 140 -----------~~~~~~L~~~L~----~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 140 -----------PEACKDLRDLLL----HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp -----------HHHHHHHHHHHH----STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHH----hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 222222221110 1123566666666655432 222334456666666666666532 23
Q ss_pred ccCCCCCCCcEEECCCCcCCCC----cccccCCCCCCCEEEccCCcccCCChhhhhCCC-----CCCEEe--CCCCcCc
Q 037427 463 KSLSNCSRLEGLYMSDNNLYGN----IPARLGNLSSLNDIMMASNHLQGPIPLEFCQLN-----YLEILD--LSENNIS 530 (829)
Q Consensus 463 ~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~--Ls~n~l~ 530 (829)
..+...++|++|+|++|.+++. ++..+...++|++|++++|.++......+..+. .|+.+. +..+.+.
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 4455566777777777777643 233444567777777777777655444444331 155665 5555554
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.87 E-value=2.1e-07 Score=100.62 Aligned_cols=69 Identities=7% Similarity=0.096 Sum_probs=38.8
Q ss_pred CcceEEcCCCcCCCCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCcccCCcccccC
Q 037427 691 KMYGVDLSCNKLTGEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVEL 761 (829)
Q Consensus 691 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l 761 (829)
+|+.+++.++.++..-..+|.++.+|+.++|..+ ++.+-..+|.++++|+.+.+..+ ++..-..+|.+.
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 4555555555555444556666666777766543 55444556666777777766544 443333444443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.87 E-value=2.8e-07 Score=99.62 Aligned_cols=126 Identities=13% Similarity=0.167 Sum_probs=68.5
Q ss_pred CCccccCCCCCccEEEccCCcCCCcchhhhhcCCCCCEEEccCCcccccCCcccCCCCCCCEEECcCCcCccCCCCCccC
Q 037427 556 LKYGTFFNRSSIVTLDLSYNSFSGNIPYWIERLIRLRYLILANNNLEGEVPNQLCGLKQLRLIDLSNNNLFGQIPGCLDN 635 (829)
Q Consensus 556 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 635 (829)
+...+|.++..|+.+.+..+ ++.....++.++.+|+.+.+..+ +.......|.++.+|+.+++.++.++..-..+|.+
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~ 308 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD 308 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence 33334556666666666543 44344455556666666666433 33344445666666666666655554333333333
Q ss_pred CCccCCCCCCCCCCCCCCCCCccceecCCCccccccceeeecccceeeecCCCCCCcceEEcCCCcCCCCCCcccccCCC
Q 037427 636 TSLHNNGDNVGSSAPTFNPNRRTTYFVGPSILEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIGKLTN 715 (829)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 715 (829)
+. +|+.++|..+ ++.+-..+|.++++
T Consensus 309 c~-----------------------------------------------------~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 309 CV-----------------------------------------------------KLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp CT-----------------------------------------------------TCCEEECCTT-CCEECTTTTTTCTT
T ss_pred CC-----------------------------------------------------CCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 32 5566666543 44344556777777
Q ss_pred CCEEECCCCCCCCCccccccccc
Q 037427 716 IRALNFSHNNLTGVIPVSFSNLN 738 (829)
Q Consensus 716 L~~L~Ls~N~l~~~~p~~l~~l~ 738 (829)
|+.+.+..+ ++.+-..+|.+..
T Consensus 335 L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 335 LSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCEEEECCc-cCEEchhHhhCCC
Confidence 777777544 5544455565543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.72 E-value=8e-09 Score=109.75 Aligned_cols=83 Identities=11% Similarity=0.171 Sum_probs=53.6
Q ss_pred CCCcceEEcCCCcCCCCCCcccc---cCCCCCEEECCCCCCCCC----ccccccccccCCeeecCCCcCcccCCccccc-
Q 037427 689 LNKMYGVDLSCNKLTGEIPPQIG---KLTNIRALNFSHNNLTGV----IPVSFSNLNQVESLDVSHNNLNGKIPPQLVE- 760 (829)
Q Consensus 689 l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~- 760 (829)
+++|+.|+|++|.+++..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 34667777777766543333332 467888888888888764 3444566788888888888887544334443
Q ss_pred CCCCcEEeccCCc
Q 037427 761 LNALVVFSVAHNN 773 (829)
Q Consensus 761 l~~L~~L~ls~N~ 773 (829)
+ ...+++++|+
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3567777776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=5.9e-09 Score=110.77 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=83.5
Q ss_pred cCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEccCCcccCCChhhhh--CCCCCCEEeCCC--CcCccc--C----
Q 037427 464 SLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMASNHLQGPIPLEFC--QLNYLEILDLSE--NNISGS--L---- 533 (829)
Q Consensus 464 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~--n~l~~~--~---- 533 (829)
.+..+++|+.|++++|.-. .++. +. +++|+.|++..+.+.......++ .+++|+.|+|+. |...+. +
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3445677777777766311 1222 32 67777777777766544333443 577788777753 221111 0
Q ss_pred CCC--CCCCcccEEEccCCcccCcCCcccc--CCCCCccEEEccCCcCCCcc----hhhhhcCCCCCEEEccCCcccccC
Q 037427 534 PSC--SSHSTIQQVHLSKNMLYGPLKYGTF--FNRSSIVTLDLSYNSFSGNI----PYWIERLIRLRYLILANNNLEGEV 605 (829)
Q Consensus 534 ~~~--~~~~~L~~L~L~~n~l~~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~ 605 (829)
+.. ..+++|++|++.+|.+.+......+ ..+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++...
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 011 1356677777776666432211101 23567777777777776543 223344577777777777766433
Q ss_pred CcccCC-CCCCCEEECcCCc
Q 037427 606 PNQLCG-LKQLRLIDLSNNN 624 (829)
Q Consensus 606 ~~~l~~-l~~L~~L~Ls~N~ 624 (829)
-..+.. + ...++++.++
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 333322 1 2456666654
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.64 E-value=3.4e-09 Score=106.55 Aligned_cols=22 Identities=5% Similarity=-0.129 Sum_probs=15.4
Q ss_pred CCccccceEecCCCCcEEEEEc
Q 037427 54 DCCKWEGVECNTSTGRVKALYL 75 (829)
Q Consensus 54 ~~c~w~gv~c~~~~~~v~~L~L 75 (829)
.-|.|.|+.|++...+|..+-.
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~ 97 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIIN 97 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEE
T ss_pred HHHhcCcEEECCCCCEEEEEEe
Confidence 3589999999865456654444
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.61 E-value=2.1e-08 Score=95.98 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=66.5
Q ss_pred ccCCCCCcEEeCCCC-CCCCcCCCccccccCCCCCCCEEECCCCCCCcc----chhhhcCCCCCCEEEcCCCcCCcc--C
Q 037427 94 LTPFQQLETLHLDSN-NIAGFVENGGLERLSGLSKLKLLNLGRNLFNNS----IFSSLAGLSSLRTLSLGYNRLKGS--I 166 (829)
Q Consensus 94 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~~L~Ls~n~i~~~--~ 166 (829)
+...+.|++|+|++| .+...........+...++|++|+|++|.+... +...+...+.|++|+|++|.|... .
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455677777777777 665432222223355566777777777776543 334445556677777777766532 0
Q ss_pred CccccccCCCCCCEEec--CCCCCCchh----hHhhhcCCCCCEEEcccccC
Q 037427 167 DVKETLDNFTNLEDLTL--DYSSLHISI----LKSIAAFTSLKRLSIQNGRV 212 (829)
Q Consensus 167 p~~~~l~~l~~L~~L~L--s~n~l~~~~----~~~l~~l~~L~~L~L~~n~l 212 (829)
.....+...++|++|+| ++|.+.... .+.+...++|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 11245555666666666 666666442 23334445555555555554
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=8.6e-08 Score=91.74 Aligned_cols=92 Identities=18% Similarity=0.156 Sum_probs=56.0
Q ss_pred cCCCCCCCEEECCCC-CCCcc----chhhhcCCCCCCEEEcCCCcCCcc--CCccccccCCCCCCEEecCCCCCCchh--
Q 037427 122 LSGLSKLKLLNLGRN-LFNNS----IFSSLAGLSSLRTLSLGYNRLKGS--IDVKETLDNFTNLEDLTLDYSSLHISI-- 192 (829)
Q Consensus 122 l~~l~~L~~L~Ls~n-~l~~~----~~~~l~~L~~L~~L~Ls~n~i~~~--~p~~~~l~~l~~L~~L~Ls~n~l~~~~-- 192 (829)
+...++|++|+|++| .+... +...+...++|++|+|++|.+... ......+...++|++|+|++|.+....
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 566778888888887 77643 344556667777777777777532 111234555566777777777776542
Q ss_pred --hHhhhcCCCCCEEEc--ccccCc
Q 037427 193 --LKSIAAFTSLKRLSI--QNGRVD 213 (829)
Q Consensus 193 --~~~l~~l~~L~~L~L--~~n~l~ 213 (829)
...+...++|++|+| ++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHhCCCceEEEecCCCCCCC
Confidence 334445555666666 555554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=3.8e-07 Score=91.55 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=58.2
Q ss_pred CCCcceEEcCCCcCCC--CCCcccccCCCCCEEECCCCCCCCCccccccccc--cCCeeecCCCcCcccCCc-------c
Q 037427 689 LNKMYGVDLSCNKLTG--EIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLN--QVESLDVSHNNLNGKIPP-------Q 757 (829)
Q Consensus 689 l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~LdLs~N~l~~~ip~-------~ 757 (829)
++.|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5678888888888887 4556777888888888888888865 3445555 888888888888876662 3
Q ss_pred cccCCCCcEEe
Q 037427 758 LVELNALVVFS 768 (829)
Q Consensus 758 l~~l~~L~~L~ 768 (829)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 66777777765
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.97 E-value=8.7e-06 Score=72.23 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=33.4
Q ss_pred eEEcCCCcCC-CCCCcccccCCCCCEEECCCCCCCCCccccccccccCCeeecCCCcCc
Q 037427 694 GVDLSCNKLT-GEIPPQIGKLTNIRALNFSHNNLTGVIPVSFSNLNQVESLDVSHNNLN 751 (829)
Q Consensus 694 ~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 751 (829)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5667777765 34554332 25666666666666555555666666666666666554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=4e-06 Score=77.82 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=17.2
Q ss_pred CCCEEecCCCC-CCchhhHhhhcCCCCCEEEcccc
Q 037427 177 NLEDLTLDYSS-LHISILKSIAAFTSLKRLSIQNG 210 (829)
Q Consensus 177 ~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n 210 (829)
+|++|+|++|. ++......++.+++|++|++++|
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 35555555442 44444444555555555555554
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=1.2e-05 Score=74.60 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=16.3
Q ss_pred cccEEEcccccccccCccccccccCCcEEecccc
Q 037427 422 NLEYLVLSENSLHGQLFSKKNYLRKLARLHLDAN 455 (829)
Q Consensus 422 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 455 (829)
.|+.||++++.++......+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555554443333444444444444444
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.55 E-value=5e-05 Score=71.89 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=42.0
Q ss_pred cCCCCCcEEeCCCC-CCCCcCCCccccccCCCCCCCEEECCCCCCCcc----chhhhcCCCCCCEEEcCCCcCCcc--CC
Q 037427 95 TPFQQLETLHLDSN-NIAGFVENGGLERLSGLSKLKLLNLGRNLFNNS----IFSSLAGLSSLRTLSLGYNRLKGS--ID 167 (829)
Q Consensus 95 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~~L~Ls~n~i~~~--~p 167 (829)
..-+.|++|+|+++ .|.........+++..-+.|++|+|++|.+... +...+..-+.|++|+|++|.|... ..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 33455666666654 443321111223344555566666666655432 233333445555555555555421 11
Q ss_pred ccccccCCCCCCEEecCC
Q 037427 168 VKETLDNFTNLEDLTLDY 185 (829)
Q Consensus 168 ~~~~l~~l~~L~~L~Ls~ 185 (829)
..+.+..-+.|++|+|++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 123344444455555543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.27 E-value=0.00017 Score=68.27 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=39.5
Q ss_pred cCCCCCCCEEECCCC-CCCcc----chhhhcCCCCCCEEEcCCCcCCc--cCCccccccCCCCCCEEecCCCCCCch
Q 037427 122 LSGLSKLKLLNLGRN-LFNNS----IFSSLAGLSSLRTLSLGYNRLKG--SIDVKETLDNFTNLEDLTLDYSSLHIS 191 (829)
Q Consensus 122 l~~l~~L~~L~Ls~n-~l~~~----~~~~l~~L~~L~~L~Ls~n~i~~--~~p~~~~l~~l~~L~~L~Ls~n~l~~~ 191 (829)
+.+-+.|++|+|++| .+... +..++..-+.|++|+|++|.|.. .....+.+..-+.|++|+|+.|.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 345567777777764 65432 34455555667777777776652 112223444555666666666666543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.82 E-value=0.0019 Score=57.00 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=48.0
Q ss_pred CEEECCCCCCC-CCccccccccccCCeeecCCCcCcccCCcccccCCCCcEEeccCCcce
Q 037427 717 RALNFSHNNLT-GVIPVSFSNLNQVESLDVSHNNLNGKIPPQLVELNALVVFSVAHNNLS 775 (829)
Q Consensus 717 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 775 (829)
..++.+++.++ ..+|..+. .+|+.|||++|+|+...+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47899999997 46676654 57999999999999777778899999999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.88 E-value=55 Score=26.43 Aligned_cols=38 Identities=5% Similarity=0.127 Sum_probs=16.9
Q ss_pred ccCCCCCCCcEEECCCCcCCCCcccccCCCCCCCEEEcc
Q 037427 463 KSLSNCSRLEGLYMSDNNLYGNIPARLGNLSSLNDIMMA 501 (829)
Q Consensus 463 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 501 (829)
.+|.+|++|+.+.|-.+ ++.....+|.++.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 44455555555554432 222333344444555444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.12 E-value=81 Score=25.42 Aligned_cols=43 Identities=16% Similarity=0.096 Sum_probs=25.8
Q ss_pred cCccccccccCCcEEecccccCCCccCccCCCCCCCcEEECCCC
Q 037427 436 QLFSKKNYLRKLARLHLDANYFTGEIPKSLSNCSRLEGLYMSDN 479 (829)
Q Consensus 436 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 479 (829)
+....|.++.+|+.+.+..+ ++.+-..+|.+|.+|+.+.+...
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33445556666666666554 33344566777777777777653
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=28.19 E-value=18 Score=19.31 Aligned_cols=11 Identities=36% Similarity=1.135 Sum_probs=7.9
Q ss_pred CCCccccceEe
Q 037427 53 SDCCKWEGVEC 63 (829)
Q Consensus 53 ~~~c~w~gv~c 63 (829)
...|+|+|..-
T Consensus 5 dgacswrglen 15 (23)
T 3ox7_P 5 DGACSWRGLEN 15 (26)
T ss_pred Ccccccccchh
Confidence 35699998763
Done!