BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037428
         (158 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CWB|H Chain H, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
           Analogue Of The Polyketide Crocacin-d
 pdb|3CWB|U Chain U, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
           Analogue Of The Polyketide Crocacin-d
 pdb|3H1H|H Chain H, Cytochrome Bc1 Complex From Chicken
 pdb|3H1H|U Chain U, Cytochrome Bc1 Complex From Chicken
 pdb|3H1I|H Chain H, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
           From Chicken
 pdb|3H1I|U Chain U, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
           From Chicken
 pdb|3H1J|H Chain H, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
 pdb|3H1J|U Chain U, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
 pdb|3H1K|H Chain H, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
           Derivative Of Kresoxim-Methyl Bound
 pdb|3H1K|U Chain U, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
           Derivative Of Kresoxim-Methyl Bound
 pdb|3H1L|H Chain H, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
           Qo And Qi Sites
 pdb|3H1L|U Chain U, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
           Qo And Qi Sites
 pdb|3L70|H Chain H, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
           Bound
 pdb|3L70|U Chain U, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
           Bound
 pdb|3L71|H Chain H, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
           Bound
 pdb|3L71|U Chain U, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
           Bound
 pdb|3L72|H Chain H, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
           Bound
 pdb|3L72|U Chain U, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
           Bound
 pdb|3L73|H Chain H, Cytochrome Bc1 Complex From Chicken With Triazolone
           Inhibitor
 pdb|3L73|U Chain U, Cytochrome Bc1 Complex From Chicken With Triazolone
           Inhibitor
 pdb|3L74|H Chain H, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
 pdb|3L74|U Chain U, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
 pdb|3L75|H Chain H, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
 pdb|3L75|U Chain U, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
 pdb|3TGU|H Chain H, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
           Inhibitor Bound
 pdb|3TGU|U Chain U, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
           Inhibitor Bound
          Length = 77

 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 95  LVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVK 152
           LVD      E C+   KCVK     + C  R+       + CT + FD+    D CVA K
Sbjct: 12  LVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHCVAHK 71

Query: 153 LFQKLK 158
           LF KLK
Sbjct: 72  LFNKLK 77


>pdb|1BCC|H Chain H, Cytochrome Bc1 Complex From Chicken
 pdb|3BCC|H Chain H, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
           From Chicken
 pdb|2BCC|H Chain H, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
          Length = 78

 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 95  LVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVK 152
           LVD      E C+   KCVK     + C +R+       + CT + FD+    D CVA K
Sbjct: 13  LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELFDFLHARDHCVAHK 72

Query: 153 LFQKLK 158
           LF  LK
Sbjct: 73  LFNSLK 78


>pdb|1BGY|H Chain H, Cytochrome Bc1 Complex From Bovine
 pdb|1BGY|T Chain T, Cytochrome Bc1 Complex From Bovine
 pdb|1BE3|H Chain H, Cytochrome Bc1 Complex From Bovine
 pdb|1L0L|H Chain H, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
           With A Bound Fungicide Famoxadone
 pdb|1L0N|H Chain H, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
           Complex
 pdb|1NTK|H Chain H, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
           Complex With Antimycin A1
 pdb|1NTM|H Chain H, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
           At 2.4 Angstrom
 pdb|1NTZ|H Chain H, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
           Bound With Ubiquinone
 pdb|1NU1|H Chain H, Crystal Structure Of Mitochondrial Cytochrome Bc1
           Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
           (Nqno)
 pdb|1PP9|H Chain H, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
 pdb|1PP9|U Chain U, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
 pdb|1PPJ|H Chain H, Bovine Cytochrome Bc1 Complex With Stigmatellin And
           Antimycin
 pdb|1PPJ|U Chain U, Bovine Cytochrome Bc1 Complex With Stigmatellin And
           Antimycin
 pdb|1SQB|H Chain H, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
 pdb|2A06|H Chain H, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
 pdb|2A06|U Chain U, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
 pdb|1SQV|H Chain H, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
 pdb|1SQX|H Chain H, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
           A
 pdb|1SQP|H Chain H, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
 pdb|1SQQ|H Chain H, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
           Acrylate Stilbene (Moas)
 pdb|2FYU|H Chain H, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
           Jg144 Inhibitor
 pdb|2YBB|H Chain H, Fitted Model For Bovine  Mitochondrial Supercomplex
           I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
 pdb|2YBB|HH Chain h, Fitted Model For Bovine  Mitochondrial Supercomplex
           I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
          Length = 78

 Score = 38.5 bits (88), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 95  LVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVK 152
           LVD      E C+   KCVK     + C +R+       + CT +  D+    D CVA K
Sbjct: 13  LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHK 72

Query: 153 LFQKLK 158
           LF  LK
Sbjct: 73  LFNSLK 78


>pdb|1QCR|H Chain H, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
           Complex, Alpha Carbon Atoms Only
          Length = 60

 Score = 35.0 bits (79), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 108 PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVKLFQKL 157
            KCVK     + C +R+       + CT +  D+    D CVA KLF  L
Sbjct: 11  EKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSL 60


>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
          Length = 258

 Score = 27.7 bits (60), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 86  LCPERADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKH 133
           + PE+A+E  ++ K+YF ++  P  VK    Y   +KR   D  G+ +
Sbjct: 134 VNPEKAEEARLEGKEYFTKSDWPNAVKA---YTEMIKRAPEDARGYSN 178


>pdb|3GVP|A Chain A, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
 pdb|3GVP|B Chain B, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
 pdb|3GVP|C Chain C, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
 pdb|3GVP|D Chain D, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
          Length = 435

 Score = 26.6 bits (57), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 140 DYWSCIDKCVAVKLFQ 155
           D+W CID+CV V+ +Q
Sbjct: 116 DFWWCIDRCVNVEGWQ 131


>pdb|3QNC|A Chain A, Crystal Structure Of A Rationally Designed Oxa-10 Variant
           Showing Carbapenemase Activity, Oxa-10loop48
 pdb|3QNC|B Chain B, Crystal Structure Of A Rationally Designed Oxa-10 Variant
           Showing Carbapenemase Activity, Oxa-10loop48
          Length = 244

 Score = 26.6 bits (57), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 53  IRVSPNNQTQAVKAVFYLTVHIRLEQLLVSFKVLCPERADEELVDQKKYFEEACKPKC 110
           +R+S  NQ + +++++   +    E  L+  + L  E A E LV  K  +    +PK 
Sbjct: 140 LRISAVNQVEFLESLYLNKLSASKENQLIVKEALVTEAAPEYLVHSKTGYSTRIEPKI 197


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,912,121
Number of Sequences: 62578
Number of extensions: 190497
Number of successful extensions: 414
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 22
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)