BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037428
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48504|QCR6_SOLTU Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2
Length = 69
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 56/68 (82%)
Query: 91 ADEELVDQKKYFEEACKPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVA 150
+DEE+VD K E +CKPKCV+ L EYQAC KR++GDESGHKHCTGQYFDYW CIDKCVA
Sbjct: 2 SDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRVEGDESGHKHCTGQYFDYWHCIDKCVA 61
Query: 151 VKLFQKLK 158
KLF LK
Sbjct: 62 AKLFDHLK 69
>sp|Q1ZXP3|QCR6_DICDI Probable cytochrome b-c1 complex subunit 6 OS=Dictyostelium
discoideum GN=uqcrh PE=3 SV=1
Length = 69
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 99 KKYFEEACKPKCVKPLLEYQACVKRIQGDESGHK-HCTGQYFDYWSCIDKCVAVKLFQKL 157
K +E C C K YQAC R+ E K +C GQ+ ++ CIDKCV KLF +L
Sbjct: 9 KGPIQEGCASGCEKSWSAYQACSGRVAKLEHDEKANCLGQFLEHVQCIDKCVGPKLFAQL 68
Query: 158 K 158
K
Sbjct: 69 K 69
>sp|Q5M9I5|QCR6_RAT Cytochrome b-c1 complex subunit 6, mitochondrial OS=Rattus
norvegicus GN=Uqcrh PE=3 SV=1
Length = 89
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 95 LVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVK 152
LVD E C+ KCVK ++C +R+ + CT + FD+ D CVA K
Sbjct: 24 LVDPLTTVREHCEQLEKCVKARERLESCDRRVSSRSQTEEDCTEELFDFLHARDHCVAHK 83
Query: 153 LFQKLK 158
LF+ LK
Sbjct: 84 LFKSLK 89
>sp|P07919|QCR6_HUMAN Cytochrome b-c1 complex subunit 6, mitochondrial OS=Homo sapiens
GN=UQCRH PE=1 SV=2
Length = 91
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 95 LVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVK 152
LVD E C+ KCVK + C +R+ + CT + FD+ D CVA K
Sbjct: 26 LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEEDCTEELFDFLHARDHCVAHK 85
Query: 153 LFQKLK 158
LF LK
Sbjct: 86 LFNNLK 91
>sp|Q8SPH5|QCR6_MACFA Cytochrome b-c1 complex subunit 6, mitochondrial OS=Macaca
fascicularis GN=UQCRH PE=3 SV=1
Length = 91
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 95 LVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVK 152
LVD E C+ KCVK + C KR+ + CT + D+ D CVA K
Sbjct: 26 LVDPLTTVREQCEQLEKCVKARERLELCDKRVSSRSRTEEDCTEELLDFLHARDHCVAYK 85
Query: 153 LFQKLK 158
LF LK
Sbjct: 86 LFNNLK 91
>sp|P99028|QCR6_MOUSE Cytochrome b-c1 complex subunit 6, mitochondrial OS=Mus musculus
GN=Uqcrh PE=1 SV=2
Length = 89
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 95 LVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVK 152
LVD E C+ KCVK + C R+ + CT + FD+ D CVA K
Sbjct: 24 LVDPLTTVREHCEQLEKCVKARERLELCDNRVSSRSQTEEDCTEELFDFLHARDHCVAHK 83
Query: 153 LFQKLK 158
LF+ LK
Sbjct: 84 LFKNLK 89
>sp|P00126|QCR6_BOVIN Cytochrome b-c1 complex subunit 6, mitochondrial OS=Bos taurus
GN=UQCRH PE=1 SV=2
Length = 91
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 95 LVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVK 152
LVD E C+ KCVK + C +R+ + CT + D+ D CVA K
Sbjct: 26 LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHK 85
Query: 153 LFQKLK 158
LF LK
Sbjct: 86 LFNSLK 91
>sp|Q9CWL2|CASZ1_MOUSE Zinc finger protein castor homolog 1 OS=Mus musculus GN=Casz1 PE=2
SV=3
Length = 1761
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 107 KPKCVKPLLEYQACVKRIQGDES-GHKHCTGQYFDYWSCID 146
KP + + YQ + R G + GH HC QY +++ C+D
Sbjct: 453 KPAVTEDVNIYQKYIARFSGSQHCGHIHCAYQYREHYHCLD 493
>sp|Q86V15|CASZ1_HUMAN Zinc finger protein castor homolog 1 OS=Homo sapiens GN=CASZ1 PE=1
SV=4
Length = 1759
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 107 KPKCVKPLLEYQACVKRIQGDES-GHKHCTGQYFDYWSCID 146
KP + + YQ + R G + GH HC QY +++ C+D
Sbjct: 454 KPAVTEDVNIYQKYIARFSGSQHCGHIHCAYQYREHYHCLD 494
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 56 SPNNQTQAVKAVFYLTVHIRLEQLLVSFKVLCPERADEELVDQK-KYFEEACKPKCVKPL 114
S + + + V ++F + RL+ +SF L L D+ KYF+ + +KP
Sbjct: 465 SMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPR 524
Query: 115 LEYQACVKRIQG 126
LE+ +C+ + G
Sbjct: 525 LEHYSCMVNLLG 536
>sp|Q03172|ZEP1_MOUSE Zinc finger protein 40 OS=Mus musculus GN=Hivep1 PE=1 SV=1
Length = 2688
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 50 IDPIRVSPNNQTQAVKAVFYLTVHIRLEQLLVSFKVLCP-ERADEELVDQKKYFEEACKP 108
+ P+ VSP + TQ+ Y + H+ + S + +C D++ Q KY E C
Sbjct: 356 VSPLSVSPASSTQSPPGPIYSSAHVA-SVVSQSVEQMCSLLLRDQKPKKQGKYICEYCNR 414
Query: 109 KCVKP 113
C KP
Sbjct: 415 ACAKP 419
>sp|Q2TAQ1|ELP1_XENLA Putative elongator complex protein 1 OS=Xenopus laevis GN=ikbkap
PE=2 SV=1
Length = 1170
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Query: 23 MKQTPTFGSD--LKIECLLWNSNNPTAYRI 50
+KQ+ FG+D KIECL+W+ N AYR+
Sbjct: 182 LKQSLNFGTDEMKKIECLMWDPEN--AYRL 209
>sp|P15822|ZEP1_HUMAN Zinc finger protein 40 OS=Homo sapiens GN=HIVEP1 PE=1 SV=3
Length = 2718
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 52 PIRVSPNNQTQAVKAVFYLTVHIRLEQLLVSFKVLCP-ERADEELVDQKKYFEEACKPKC 110
P+ +SP N TQ+ Y + H+ + S + +C D++ Q KY E C C
Sbjct: 357 PLSISPANSTQSPPMPIYNSTHVA-SVVNQSVEQMCNLLLKDQKPKKQGKYICEYCNRAC 415
Query: 111 VKP 113
KP
Sbjct: 416 AKP 418
>sp|A9BGL2|MNMG_PETMO tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=mnmG
PE=3 SV=1
Length = 625
Score = 29.6 bits (65), Expect = 8.2, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 39 LWNSNNPTAYRIDPIRVSPN--NQTQAVKAVFYLTVHIRLEQLL----VSFKVLCPERAD 92
L N N R+D I+VSPN N A K +T + + +LL +S+ L + D
Sbjct: 471 LENLINHQIERLDQIKVSPNQVNDILASKGSSKITQPVHMSELLKRSEISYTDL--KHLD 528
Query: 93 EELVDQKKYFEE 104
EE V++K+ E+
Sbjct: 529 EEAVEEKEVIEQ 540
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,173,960
Number of Sequences: 539616
Number of extensions: 2414629
Number of successful extensions: 3931
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3921
Number of HSP's gapped (non-prelim): 17
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)