Query 037428
Match_columns 158
No_of_seqs 107 out of 226
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 20:54:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tgu_H Mitochondrial ubiquinol 100.0 3.1E-34 1.1E-38 205.1 5.1 71 88-158 5-77 (77)
2 1pp9_H Ubiquinol-cytochrome C 100.0 1.5E-33 5.2E-38 201.9 4.9 69 90-158 8-78 (78)
3 3cx5_F Cytochrome B-C1 complex 100.0 2.5E-31 8.4E-36 209.6 2.5 70 89-158 67-146 (146)
4 2lql_A Coiled-coil-helix-coile 34.0 27 0.00093 25.6 2.7 41 108-151 59-99 (113)
5 1ekz_A DSRBDIII, maternal effe 21.5 56 0.0019 21.3 2.3 21 90-110 1-21 (76)
6 2lql_A Coiled-coil-helix-coile 17.7 27 0.00092 25.6 0.0 40 109-148 36-75 (113)
7 2jsd_A Matrix metalloproteinas 16.8 44 0.0015 24.2 1.0 29 39-68 4-34 (160)
8 1y93_A Macrophage metalloelast 15.2 51 0.0018 24.4 1.0 29 39-68 4-34 (159)
9 3thf_A Protein shroom; coiled- 15.1 1.4E+02 0.0049 24.1 3.7 35 50-84 2-36 (190)
10 2pa8_L DNA-directed RNA polyme 14.4 1.1E+02 0.0037 21.3 2.5 26 95-120 62-90 (92)
No 1
>3tgu_H Mitochondrial ubiquinol-cytochrome C reductase 11 protein, complex III subunit VIII...; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_H* 3h1i_H* 3h1h_H* 3h1k_H* 3h1l_H* 3h1j_H* 3l71_H* 3l72_H* 3l73_H* 3l74_H* 3l75_H* 3l70_H*
Probab=100.00 E-value=3.1e-34 Score=205.05 Aligned_cols=71 Identities=39% Similarity=0.690 Sum_probs=65.8
Q ss_pred CCccccccCChHHHHHHHhh--hhCcchHHHHHHHHhhhcCCCCCCCCchhhhhhhhhhhhhhhhhHHhhhhC
Q 037428 88 PERADEELVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVKLFQKLK 158 (158)
Q Consensus 88 p~meEEE~vDPk~~LREeC~--~kC~k~k~~YdeCvERV~s~~~tkE~CveEfFDllHCVDhCVAPKLF~kLK 158 (158)
|+.||||++||++.||++|+ ++|++++++|++|++||++++++++||+||||||+||+|||||||||++||
T Consensus 5 ~~eeEeE~vDp~~~lre~C~~~~~C~~~~~~y~~C~eRV~~~~~~~e~C~eE~Fd~~hCvD~CvapkLF~~LK 77 (77)
T 3tgu_H 5 GEEEEEELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHCVAHKLFNKLK 77 (77)
T ss_dssp ----CCCCCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTCSSCCCCSHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred CccccccccCHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhcHHHHHhcC
Confidence 56778899999999999999 799999999999999999999999999999999999999999999999998
No 2
>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...
Probab=99.98 E-value=1.5e-33 Score=201.93 Aligned_cols=69 Identities=36% Similarity=0.666 Sum_probs=63.3
Q ss_pred ccccccCChHHHHHHHhh--hhCcchHHHHHHHHhhhcCCCCCCCCchhhhhhhhhhhhhhhhhHHhhhhC
Q 037428 90 RADEELVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAVKLFQKLK 158 (158)
Q Consensus 90 meEEE~vDPk~~LREeC~--~kC~k~k~~YdeCvERV~s~~~tkE~CveEfFDllHCVDhCVAPKLF~kLK 158 (158)
.+|||+|||++.||++|+ ++|++++++|++|++||++++++++||+|||||||||||||||||||++||
T Consensus 8 eeeEE~vDp~~~l~e~C~~~~~C~~~~~~y~~C~eRV~s~~~~~e~C~ee~fd~~hCvD~CvapkLf~~LK 78 (78)
T 1pp9_H 8 EEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSLK 78 (78)
T ss_dssp -----CCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred hhcccccChHHHHHHHHhcchhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhhHHHHHhcC
Confidence 345789999999999999 899999999999999999999999999999999999999999999999998
No 3
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*
Probab=99.96 E-value=2.5e-31 Score=209.59 Aligned_cols=70 Identities=27% Similarity=0.513 Sum_probs=61.1
Q ss_pred CccccccCChHHHHHHHhh--hhCcchHHHHHHHHhhhcCCC--------CCCCCchhhhhhhhhhhhhhhhhHHhhhhC
Q 037428 89 ERADEELVDQKKYFEEACK--PKCVKPLLEYQACVKRIQGDE--------SGHKHCTGQYFDYWSCIDKCVAVKLFQKLK 158 (158)
Q Consensus 89 ~meEEE~vDPk~~LREeC~--~kC~k~k~~YdeCvERV~s~~--------~tkE~CveEfFDllHCVDhCVAPKLF~kLK 158 (158)
+.+|||++||++.||++|+ ++|++++++|++|++||++++ .+++||++|||||+||||||||||||++||
T Consensus 67 eeeEEE~vDPk~~LrEeC~~s~~C~~~~~~ydeCveRV~s~~e~~G~~~~~~~EdC~eE~Fdl~hCvD~CvAPKLF~~LK 146 (146)
T 3cx5_F 67 EEEEEEVTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHYLDTATAPRLFDKLK 146 (146)
T ss_dssp ------CCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHSTTGGGCCSCCCCHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred ccccccccChHHHHHHHhcCCchhHHHHHHHHHHHHHHHccccccccccCCCCcccHHHHHHHHhhHhhccCHHHHHhcC
Confidence 3456689999999999999 899999999999999999853 379999999999999999999999999998
No 4
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=33.95 E-value=27 Score=25.56 Aligned_cols=41 Identities=12% Similarity=0.549 Sum_probs=29.9
Q ss_pred hhCcchHHHHHHHHhhhcCCCCCCCCchhhhhhhhhhhhhhhhh
Q 037428 108 PKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKCVAV 151 (158)
Q Consensus 108 ~kC~k~k~~YdeCvERV~s~~~tkE~CveEfFDllHCVDhCVAP 151 (158)
.+|......|..|.+.=+ ..-+.|..+.-.|..|+.+-..|
T Consensus 59 ~~C~~ef~~y~~CL~~n~---~~~~~Cr~~~~~f~~Cae~v~~~ 99 (113)
T 2lql_A 59 QACAQPFEAFEECLRQNE---AAVGNCAEHMRRFLQCAEQVQPP 99 (113)
T ss_dssp HHTHHHHHHHHHHHHHCT---TCTTTCCSHHHHHHHHHTTC---
T ss_pred HHhHHHHHHHHHHHHHcc---ccHHHHHHHHHHHHHHHHHhccc
Confidence 357888999999997733 23468999999999998765443
No 5
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=21.51 E-value=56 Score=21.26 Aligned_cols=21 Identities=5% Similarity=-0.078 Sum_probs=17.7
Q ss_pred ccccccCChHHHHHHHhhhhC
Q 037428 90 RADEELVDQKKYFEEACKPKC 110 (158)
Q Consensus 90 meEEE~vDPk~~LREeC~~kC 110 (158)
|++....||+..|.|-|+.+.
T Consensus 1 m~~~~~~d~ks~LqE~~q~~~ 21 (76)
T 1ekz_A 1 MDEGDKKSPISQVHEIGIKRN 21 (76)
T ss_dssp CCCCCCSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHcC
Confidence 677778999999999998553
No 6
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=17.69 E-value=27 Score=25.60 Aligned_cols=40 Identities=10% Similarity=0.252 Sum_probs=24.1
Q ss_pred hCcchHHHHHHHHhhhcCCCCCCCCchhhhhhhhhhhhhh
Q 037428 109 KCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCIDKC 148 (158)
Q Consensus 109 kC~k~k~~YdeCvERV~s~~~tkE~CveEfFDllHCVDhC 148 (158)
+|.+.....-.|..=+..=.+=+.+|.++|-.|+.|+|.-
T Consensus 36 ~Cl~eg~~vt~Ca~~~p~~~~I~~~C~~ef~~y~~CL~~n 75 (113)
T 2lql_A 36 DCHYLKMSIAQCTSSHPIIRQIRQACAQPFEAFEECLRQN 75 (113)
T ss_dssp TCSHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 3555555555554321111134568999999999998753
No 7
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=16.76 E-value=44 Score=24.22 Aligned_cols=29 Identities=28% Similarity=0.503 Sum_probs=18.2
Q ss_pred hhcCCCCcceeeeee--eeCCcchHHHHHHHH
Q 037428 39 LWNSNNPTAYRIDPI--RVSPNNQTQAVKAVF 68 (158)
Q Consensus 39 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 68 (158)
.|. +..+.|+|... .+++.++.+++++||
T Consensus 4 ~W~-~~~itY~i~~~~~~~~~~~~~~~i~~A~ 34 (160)
T 2jsd_A 4 KWK-KNTLTYRISKYTPSMSSVEVDKAVEMAL 34 (160)
T ss_dssp SCS-CSEEEEEECCCCSSSCHHHHHHHHHHHH
T ss_pred ccc-CCeEEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 584 56788999864 233335566666665
No 8
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Probab=15.16 E-value=51 Score=24.36 Aligned_cols=29 Identities=21% Similarity=0.558 Sum_probs=17.5
Q ss_pred hhcCCCCcceeeeeee--eCCcchHHHHHHHH
Q 037428 39 LWNSNNPTAYRIDPIR--VSPNNQTQAVKAVF 68 (158)
Q Consensus 39 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 68 (158)
.|. .....|+|.... +++.++.+++++||
T Consensus 4 kW~-~~~ltY~i~~~~~~l~~~~~~~~i~~A~ 34 (159)
T 1y93_A 4 VWR-KHYITYRINNYTPDMNREDVDYAIRKAF 34 (159)
T ss_dssp CCS-SSEEEEEECCCCTTSCHHHHHHHHHHHH
T ss_pred ccc-CCEEEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 584 567899998642 23234555666665
No 9
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=15.06 E-value=1.4e+02 Score=24.13 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=21.5
Q ss_pred eeeeeeCCcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037428 50 IDPIRVSPNNQTQAVKAVFYLTVHIRLEQLLVSFK 84 (158)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (158)
||||+-.|||-+++=|.-.+-....-+..|-+.-+
T Consensus 2 ~~~~~~~~~~~i~~Kk~ELi~~L~~kL~~L~~eqe 36 (190)
T 3thf_A 2 IDPFTEEPTNLIKQKMDELIKHLNQKIVSLKREQQ 36 (190)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998888888877777765543
No 10
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=14.35 E-value=1.1e+02 Score=21.31 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=20.2
Q ss_pred cCChHHHHHHHhh---hhCcchHHHHHHH
Q 037428 95 LVDQKKYFEEACK---PKCVKPLLEYQAC 120 (158)
Q Consensus 95 ~vDPk~~LREeC~---~kC~k~k~~YdeC 120 (158)
..+|.++|++.|. ..|..+...|++.
T Consensus 62 ~~~p~~al~~a~~~l~~~~~~~~~~f~~~ 90 (92)
T 2pa8_L 62 SITPKDALLKAIENIRGMTSHYIDEIKGL 90 (92)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888886 6788888887763
Done!