Query 037429
Match_columns 402
No_of_seqs 294 out of 1862
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 12:09:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.4E-67 3.1E-72 528.7 39.5 371 15-400 9-383 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 2.9E-51 6.2E-56 408.4 31.8 296 90-401 41-345 (398)
3 PTZ00165 aspartyl protease; Pr 100.0 2.5E-45 5.4E-50 370.3 28.5 260 82-400 109-392 (482)
4 cd05478 pepsin_A Pepsin A, asp 100.0 3.8E-45 8.3E-50 354.3 26.0 257 85-400 2-274 (317)
5 cd05489 xylanase_inhibitor_I_l 100.0 6.1E-45 1.3E-49 357.6 27.4 276 102-400 2-314 (362)
6 cd05477 gastricsin Gastricsins 100.0 2.3E-44 5.1E-49 349.0 26.3 254 93-400 1-269 (318)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 2.6E-44 5.7E-49 349.7 25.8 256 91-400 2-274 (325)
8 cd05488 Proteinase_A_fungi Fun 100.0 3.4E-44 7.4E-49 348.1 25.6 254 90-400 5-273 (320)
9 cd05472 cnd41_like Chloroplast 100.0 5.8E-44 1.3E-48 343.3 26.2 243 95-399 1-249 (299)
10 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.3E-43 2.9E-48 344.7 26.6 252 94-400 2-280 (326)
11 cd05486 Cathespin_E Cathepsin 100.0 1E-43 2.3E-48 344.1 23.6 250 96-400 1-265 (316)
12 cd05485 Cathepsin_D_like Cathe 100.0 7.4E-43 1.6E-47 339.9 25.0 256 90-400 6-278 (329)
13 cd06098 phytepsin Phytepsin, a 100.0 5.1E-42 1.1E-46 332.3 26.3 245 90-400 5-266 (317)
14 cd05487 renin_like Renin stimu 100.0 8.1E-42 1.8E-46 332.3 25.3 255 90-400 3-274 (326)
15 PTZ00147 plasmepsin-1; Provisi 100.0 2.1E-41 4.5E-46 339.3 28.1 258 82-399 128-399 (453)
16 PTZ00013 plasmepsin 4 (PM4); P 100.0 3.4E-40 7.3E-45 330.0 28.9 258 82-399 127-398 (450)
17 cd06097 Aspergillopepsin_like 100.0 3E-40 6.4E-45 314.3 22.6 237 96-386 1-251 (278)
18 cd05473 beta_secretase_like Be 100.0 2.3E-39 4.9E-44 319.7 26.7 265 94-400 2-297 (364)
19 cd05475 nucellin_like Nucellin 100.0 1.6E-39 3.4E-44 308.5 23.7 212 94-399 1-222 (273)
20 cd05471 pepsin_like Pepsin-lik 100.0 3.9E-37 8.4E-42 292.6 25.4 240 96-386 1-256 (283)
21 cd05476 pepsin_A_like_plant Ch 100.0 2.9E-37 6.4E-42 291.7 21.7 211 95-399 1-217 (265)
22 cd05474 SAP_like SAPs, pepsin- 100.0 7.3E-36 1.6E-40 286.3 21.9 223 95-400 2-246 (295)
23 PF00026 Asp: Eukaryotic aspar 100.0 3.9E-36 8.5E-41 290.6 16.8 249 95-400 1-266 (317)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1.1E-34 2.3E-39 254.2 15.1 161 96-271 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 3.1E-25 6.7E-30 181.0 12.6 106 98-231 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.6 2.2E-15 4.8E-20 131.6 9.0 106 293-400 1-115 (161)
27 cd05483 retropepsin_like_bacte 98.1 1.3E-05 2.9E-10 62.8 7.4 94 94-233 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.5 0.017 3.6E-07 47.7 8.6 97 91-233 7-103 (121)
29 PF13650 Asp_protease_2: Aspar 95.9 0.065 1.4E-06 41.0 8.7 89 98-232 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 93.8 0.52 1.1E-05 39.0 9.0 32 92-125 13-44 (124)
31 cd05484 retropepsin_like_LTR_2 89.8 0.4 8.7E-06 37.1 3.5 28 96-125 1-28 (91)
32 PF13975 gag-asp_proteas: gag- 82.4 2.6 5.7E-05 31.1 4.4 35 91-127 4-38 (72)
33 cd06095 RP_RTVL_H_like Retrope 81.8 11 0.00025 28.6 8.0 25 100-126 3-27 (86)
34 PF00077 RVP: Retroviral aspar 79.5 2.8 6.1E-05 32.7 4.0 27 97-125 7-33 (100)
35 COG3577 Predicted aspartyl pro 70.5 14 0.0003 33.2 6.2 80 90-207 100-179 (215)
36 PF11925 DUF3443: Protein of u 67.5 15 0.00033 35.9 6.3 103 97-233 25-148 (370)
37 cd05482 HIV_retropepsin_like R 63.3 10 0.00022 29.2 3.6 25 99-125 2-26 (87)
38 PF12384 Peptidase_A2B: Ty3 tr 48.4 24 0.00052 30.6 3.6 28 98-125 35-62 (177)
39 PF09668 Asp_protease: Asparty 33.7 75 0.0016 26.3 4.3 36 93-130 22-57 (124)
40 TIGR03698 clan_AA_DTGF clan AA 29.8 69 0.0015 25.5 3.5 24 98-121 2-29 (107)
41 cd06098 phytepsin Phytepsin, a 24.1 90 0.002 29.9 3.8 33 93-125 187-227 (317)
42 cd05475 nucellin_like Nucellin 23.1 85 0.0019 29.3 3.4 32 94-125 157-194 (273)
43 cd05471 pepsin_like Pepsin-lik 23.0 86 0.0019 28.9 3.4 34 93-126 179-220 (283)
44 cd06097 Aspergillopepsin_like 22.6 83 0.0018 29.4 3.2 33 93-125 176-215 (278)
45 PF08284 RVP_2: Retroviral asp 22.2 1.3E+02 0.0028 25.1 3.9 30 94-125 20-49 (135)
46 PF05585 DUF1758: Putative pep 20.6 50 0.0011 28.4 1.1 20 106-125 10-29 (164)
47 cd00303 retropepsin_like Retro 20.2 99 0.0022 21.6 2.6 20 99-120 2-21 (92)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.4e-67 Score=528.72 Aligned_cols=371 Identities=30% Similarity=0.535 Sum_probs=305.1
Q ss_pred HHHHhhhhccccCCCceEEEEecCCCCCCCCCCCCCCchHHHHHHHhccHHHHHhhhhcCCCCCcccceeeeeeeccCCe
Q 037429 15 LTFSRLLHFISSKPTGLSFRLIPRDSPESPLYPGNLTGLERIERMIKFSDFRAAYLESSSTPSATVDAERIVFTLLREGF 94 (402)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~p~~~~~~~~~ 94 (402)
|+.+++++...+...+++++|+||++||+|+++++.++.++++++++|+.+|++++.++.... .....++ ..+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~~~~~~~---~~~~~ 83 (431)
T PLN03146 9 LFSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASP--NDPQSDL---ISNGG 83 (431)
T ss_pred HHHHhhhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccC--CccccCc---ccCCc
Confidence 333445555556778999999999999999988888889999999999999999986543211 1233444 56788
Q ss_pred EEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCCC-CceE
Q 037429 95 YYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQ-CVYS 173 (402)
Q Consensus 95 ~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~-~~~~ 173 (402)
+|+++|.||||||++.|+|||||+++||+|.+|..|..+.++.|||++|+||+.++|+++.|..+.+...|..++ |.|.
T Consensus 84 ~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~ 163 (431)
T PLN03146 84 EYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYS 163 (431)
T ss_pred cEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeE
Confidence 999999999999999999999999999999999999999999999999999999999999998877644586655 9999
Q ss_pred EeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCcccccCCccceeeecCCCCChhhhhhhhhccCceEEe
Q 037429 174 VGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFASRGVISGILGLSSSPDSIVMQLSDVVDKRFSYC 253 (402)
Q Consensus 174 ~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~~FS~~ 253 (402)
+.|+||+.+.|.+++|+|+|++..+....++++.|||++.+.+ .|....+||||||++++|+++||...+.++||||
T Consensus 164 i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g---~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSyc 240 (431)
T PLN03146 164 YSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGG---TFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYC 240 (431)
T ss_pred EEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCC---CccCCCceeEecCCCCccHHHHhhHhhCCcEEEE
Confidence 9999999888999999999988654445789999999998887 5644689999999999999999987777799999
Q ss_pred eccCCCCCCCCceEEECCCCCCCCCCeeeeeecCCCCCceeEEEEEEEEECCEEeeecccccccccCCCCeeeeecC--C
Q 037429 254 LVPFTDALMAPSIVKFGNDIPPLSGTVQATTFVPPPGSFYYHLSLIDISVGTRRSRSVTTTLARSRTVTNDLPGYDS--D 331 (402)
Q Consensus 254 l~~~~~~~~~~G~l~fG~~~~~~~~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~i~~iDS--t 331 (402)
|.+..++....|.|+||+.......++.||||+.+..+.+|+|+|++|+||++++.++...|. ..+.+++| ||| +
T Consensus 241 L~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~-~~~~g~~i--iDSGTt 317 (431)
T PLN03146 241 LVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKN-GVEEGNII--IDSGTT 317 (431)
T ss_pred CCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccc-cCCCCcEE--EeCCcc
Confidence 986433334589999998533223458999998654457999999999999999988766653 23456899 999 9
Q ss_pred cccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCccccEEEEEEcCcEEEEccc-cccc
Q 037429 332 QTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPGFNNFASFTYHFDGASYDIEGK-FVNL 400 (402)
Q Consensus 332 ~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~G~~~~l~~~-yi~~ 400 (402)
+++||+++|++|+++|.+++.. .+.......++.||+.... ..+|+|+|||+|+++.||++ |+..
T Consensus 318 ~t~Lp~~~y~~l~~~~~~~~~~---~~~~~~~~~~~~C~~~~~~-~~~P~i~~~F~Ga~~~l~~~~~~~~ 383 (431)
T PLN03146 318 LTLLPSDFYSELESAVEEAIGG---ERVSDPQGLLSLCYSSTSD-IKLPIITAHFTGADVKLQPLNTFVK 383 (431)
T ss_pred ceecCHHHHHHHHHHHHHHhcc---ccCCCCCCCCCccccCCCC-CCCCeEEEEECCCeeecCcceeEEE
Confidence 9999999999999999998862 2222333346789986433 57999999999999999999 6653
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-51 Score=408.36 Aligned_cols=296 Identities=29% Similarity=0.537 Sum_probs=243.0
Q ss_pred ccCCeEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCC-CcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCC
Q 037429 90 LREGFYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCK-NCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQ 168 (402)
Q Consensus 90 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~-~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~ 168 (402)
...+++|+++|.||||||+|.|++||||+++||+|.+|. .|..+.++.|||++||||+.+.|.++.|...... |..+
T Consensus 41 ~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~--~~~~ 118 (398)
T KOG1339|consen 41 SYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS--CSPN 118 (398)
T ss_pred cccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccC--cccC
Confidence 557789999999999999999999999999999999999 7988766679999999999999999999988762 5555
Q ss_pred C-CceEEeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCcccccCCccceeeecCCCCChhhhhhhhh--
Q 037429 169 Q-CVYSVGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFASRGVISGILGLSSSPDSIVMQLSDV-- 245 (402)
Q Consensus 169 ~-~~~~~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~-- 245 (402)
+ |.|.+.|+||+.++|++++|+|+|++.+ .+.++++.|||+..+.+. +....+.+||||||++++|+++|+...
T Consensus 119 ~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~--~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~~~~~ 195 (398)
T KOG1339|consen 119 SSCPYSIQYGDGSSTSGYLATDTVTFGGTT--SLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLPSFYN 195 (398)
T ss_pred CcCceEEEeCCCCceeEEEEEEEEEEcccc--ccccccEEEEeeecCccc-cccccccceEeecCCCCccceeecccccC
Confidence 4 9999999998888899999999999842 127778999999999762 111146899999999999999999876
Q ss_pred ccCceEEeeccCCCCCCCCceEEECCCCCCCC-CCeeeeeecCCCCCceeEEEEEEEEECCEEeeecccccccccCCCCe
Q 037429 246 VDKRFSYCLVPFTDALMAPSIVKFGNDIPPLS-GTVQATTFVPPPGSFYYHLSLIDISVGTRRSRSVTTTLARSRTVTND 324 (402)
Q Consensus 246 ~~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~~-~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~ 324 (402)
..++|||||.+.......+|.|+||+.+..+. +.+.|+||+.+.. .||+|+|++|+||++. .+....+. .+.+++
T Consensus 196 ~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~-~~y~v~l~~I~vgg~~-~~~~~~~~--~~~~~~ 271 (398)
T KOG1339|consen 196 AINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS-TYYQVNLDGISVGGKR-PIGSSLFC--TDGGGA 271 (398)
T ss_pred CceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC-ccEEEEEeEEEECCcc-CCCcceEe--cCCCCE
Confidence 34579999998642223689999999988764 5599999999764 6999999999999987 65555552 225789
Q ss_pred eeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCccccEEEEEEc-CcEEEEccc-cccc
Q 037429 325 LPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPGFNNFASFTYHFD-GASYDIEGK-FVNL 400 (402)
Q Consensus 325 i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~-G~~~~l~~~-yi~~ 400 (402)
| +|| ++++||+++|++|.++|.+.+. . ..........||........+|.|+|+|+ |+.|.|+++ |+..
T Consensus 272 i--iDSGTs~t~lp~~~y~~i~~~~~~~~~---~--~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~ 344 (398)
T KOG1339|consen 272 I--IDSGTSLTYLPTSAYNALREAIGAEVS---V--VGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKNYLVE 344 (398)
T ss_pred E--EECCcceeeccHHHHHHHHHHHHhhee---c--cccCCceeeecccCCCCcccCCcEEEEECCCcEEEeCccceEEE
Confidence 9 999 9999999999999999988741 1 01122235579987442234999999999 899999999 8775
Q ss_pred c
Q 037429 401 F 401 (402)
Q Consensus 401 ~ 401 (402)
.
T Consensus 345 ~ 345 (398)
T KOG1339|consen 345 V 345 (398)
T ss_pred E
Confidence 4
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.5e-45 Score=370.25 Aligned_cols=260 Identities=16% Similarity=0.289 Sum_probs=212.8
Q ss_pred ceeeeeeeccCCeEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCC
Q 037429 82 AERIVFTLLREGFYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNN 161 (402)
Q Consensus 82 ~~~p~~~~~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~ 161 (402)
...|+. ++.+.+|+++|+||||||+|.|+|||||+++||+|..|..|.|+.++.|||++||||+.+.+.. .
T Consensus 109 ~~~~l~--n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~------~- 179 (482)
T PTZ00165 109 LQQDLL--NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD------E- 179 (482)
T ss_pred cceecc--cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC------c-
Confidence 456665 8899999999999999999999999999999999999998888889999999999999853211 0
Q ss_pred CCCCCCCCCceEEeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCccccc-CCccceeeecCCCCC----
Q 037429 162 LYKCVDQQCVYSVGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFAS-RGVISGILGLSSSPD---- 236 (402)
Q Consensus 162 ~~~C~~~~~~~~~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~-~~~~~GIlGLg~~~~---- 236 (402)
...+.+.|++|+.. |.+++|+|+|++. .++++.|||++..++. .| ....|||||||++.+
T Consensus 180 -------~~~~~i~YGsGs~~-G~l~~DtV~ig~l-----~i~~q~FG~a~~~s~~--~f~~~~~DGILGLg~~~~s~~s 244 (482)
T PTZ00165 180 -------SAETYIQYGTGECV-LALGKDTVKIGGL-----KVKHQSIGLAIEESLH--PFADLPFDGLVGLGFPDKDFKE 244 (482)
T ss_pred -------cceEEEEeCCCcEE-EEEEEEEEEECCE-----EEccEEEEEEEecccc--ccccccccceeecCCCcccccc
Confidence 03578999999877 9999999999987 8999999999987652 33 356899999999865
Q ss_pred -----hhhhhhhhh--c-cCceEEeeccCCCCCCCCceEEECCCCCCCC---CCeeeeeecCCCCCceeEEEEEEEEECC
Q 037429 237 -----SIVMQLSDV--V-DKRFSYCLVPFTDALMAPSIVKFGNDIPPLS---GTVQATTFVPPPGSFYYHLSLIDISVGT 305 (402)
Q Consensus 237 -----s~~~ql~~~--~-~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~~---~~~~~tp~~~~~~~~~y~v~l~~i~vg~ 305 (402)
+++.+|.+| + .++||+||++. ...+|.|+|||.|+.+. +++.|+|+... .||+|++++|+||+
T Consensus 245 ~~~~~p~~~~l~~qgli~~~~FS~yL~~~---~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~---~yW~i~l~~i~vgg 318 (482)
T PTZ00165 245 SKKALPIVDNIKKQNLLKRNIFSFYMSKD---LNQPGSISFGSADPKYTLEGHKIWWFPVIST---DYWEIEVVDILIDG 318 (482)
T ss_pred cCCCCCHHHHHHHcCCcccceEEEEeccC---CCCCCEEEeCCcCHHHcCCCCceEEEEcccc---ceEEEEeCeEEECC
Confidence 345677776 3 68999999863 24579999999987653 46999999763 59999999999999
Q ss_pred EEeeecccccccccCCCCeeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCccccEEE
Q 037429 306 RRSRSVTTTLARSRTVTNDLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPGFNNFASFT 383 (402)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~ 383 (402)
+.+.... ....+| +|| +++++|+++|++|.+++... ..|... ..+|+|+
T Consensus 319 ~~~~~~~-------~~~~aI--iDTGTSli~lP~~~~~~i~~~i~~~----------------~~C~~~----~~lP~it 369 (482)
T PTZ00165 319 KSLGFCD-------RKCKAA--IDTGSSLITGPSSVINPLLEKIPLE----------------EDCSNK----DSLPRIS 369 (482)
T ss_pred EEeeecC-------CceEEE--EcCCCccEeCCHHHHHHHHHHcCCc----------------cccccc----ccCCceE
Confidence 8776521 245689 999 99999999999988766321 147765 5789999
Q ss_pred EEEcCc-----EEEEccc-cccc
Q 037429 384 YHFDGA-----SYDIEGK-FVNL 400 (402)
Q Consensus 384 f~f~G~-----~~~l~~~-yi~~ 400 (402)
|+|+|. +|.|+|+ |+..
T Consensus 370 f~f~g~~g~~v~~~l~p~dYi~~ 392 (482)
T PTZ00165 370 FVLEDVNGRKIKFDMDPEDYVIE 392 (482)
T ss_pred EEECCCCCceEEEEEchHHeeee
Confidence 999864 8999999 8864
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=3.8e-45 Score=354.30 Aligned_cols=257 Identities=17% Similarity=0.284 Sum_probs=213.3
Q ss_pred eeeeeccCCeEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCC
Q 037429 85 IVFTLLREGFYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYK 164 (402)
Q Consensus 85 p~~~~~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~ 164 (402)
||+ ++.+.+|+++|.||||||++.|+|||||+++||+|..|..|.|+.++.|||++|+||+...
T Consensus 2 ~l~--n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~-------------- 65 (317)
T cd05478 2 PLT--NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTG-------------- 65 (317)
T ss_pred ccc--cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCC--------------
Confidence 454 6779999999999999999999999999999999999998888888999999999998732
Q ss_pred CCCCCCceEEeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCccccc--CCccceeeecCCCCC------
Q 037429 165 CVDQQCVYSVGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFAS--RGVISGILGLSSSPD------ 236 (402)
Q Consensus 165 C~~~~~~~~~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~--~~~~~GIlGLg~~~~------ 236 (402)
|.|++.|++|+. .|.+++|+|++++. .++++.|||++...+ .+ ....+||||||++..
T Consensus 66 -----~~~~~~yg~gs~-~G~~~~D~v~ig~~-----~i~~~~fg~~~~~~~---~~~~~~~~dGilGLg~~~~s~~~~~ 131 (317)
T cd05478 66 -----QPLSIQYGTGSM-TGILGYDTVQVGGI-----SDTNQIFGLSETEPG---SFFYYAPFDGILGLAYPSIASSGAT 131 (317)
T ss_pred -----cEEEEEECCceE-EEEEeeeEEEECCE-----EECCEEEEEEEecCc---cccccccccceeeeccchhcccCCC
Confidence 889999999995 69999999999987 899999999987766 33 235899999998754
Q ss_pred hhhhhhhhh--c-cCceEEeeccCCCCCCCCceEEECCCCCCC-CCCeeeeeecCCCCCceeEEEEEEEEECCEEeeecc
Q 037429 237 SIVMQLSDV--V-DKRFSYCLVPFTDALMAPSIVKFGNDIPPL-SGTVQATTFVPPPGSFYYHLSLIDISVGTRRSRSVT 312 (402)
Q Consensus 237 s~~~ql~~~--~-~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~-~~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~~ 312 (402)
+++.||+++ + .++||+||.+. ....|.|+||+.|..+ .+.+.|+|+.. +.+|.|.+++|+||++.+...
T Consensus 132 ~~~~~L~~~g~i~~~~FS~~L~~~---~~~~g~l~~Gg~d~~~~~g~l~~~p~~~---~~~w~v~l~~v~v~g~~~~~~- 204 (317)
T cd05478 132 PVFDNMMSQGLVSQDLFSVYLSSN---GQQGSVVTFGGIDPSYYTGSLNWVPVTA---ETYWQITVDSVTINGQVVACS- 204 (317)
T ss_pred CHHHHHHhCCCCCCCEEEEEeCCC---CCCCeEEEEcccCHHHccCceEEEECCC---CcEEEEEeeEEEECCEEEccC-
Confidence 367888877 3 58999999974 2357999999998765 57799999975 359999999999999987532
Q ss_pred cccccccCCCCeeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCC-CccccEEEEEEcCc
Q 037429 313 TTLARSRTVTNDLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPG-FNNFASFTYHFDGA 389 (402)
Q Consensus 313 ~~~~~~~~~~~~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~P~i~f~f~G~ 389 (402)
.+.++| ||| +++++|+++|++|.+++.+... . ..+|..+|. ...+|.|+|+|+|+
T Consensus 205 -------~~~~~i--iDTGts~~~lp~~~~~~l~~~~~~~~~---------~----~~~~~~~C~~~~~~P~~~f~f~g~ 262 (317)
T cd05478 205 -------GGCQAI--VDTGTSLLVGPSSDIANIQSDIGASQN---------Q----NGEMVVNCSSISSMPDVVFTINGV 262 (317)
T ss_pred -------CCCEEE--ECCCchhhhCCHHHHHHHHHHhCCccc---------c----CCcEEeCCcCcccCCcEEEEECCE
Confidence 234688 999 9999999999999887744321 0 124555555 25789999999999
Q ss_pred EEEEccc-cccc
Q 037429 390 SYDIEGK-FVNL 400 (402)
Q Consensus 390 ~~~l~~~-yi~~ 400 (402)
+++||++ |+..
T Consensus 263 ~~~i~~~~y~~~ 274 (317)
T cd05478 263 QYPLPPSAYILQ 274 (317)
T ss_pred EEEECHHHheec
Confidence 9999999 8764
No 5
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=6.1e-45 Score=357.58 Aligned_cols=276 Identities=23% Similarity=0.325 Sum_probs=218.0
Q ss_pred eCCCCcE-EEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCC-----------CCCCCCC
Q 037429 102 IGSPPLN-VFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNL-----------YKCVDQQ 169 (402)
Q Consensus 102 vGtP~q~-~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~-----------~~C~~~~ 169 (402)
+|||-.+ +.|+|||||+++||||.+ .+|+||+.++|+++.|...... ..|..+.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~ 67 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNT 67 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCc
Confidence 5788777 999999999999999974 4688999999999999865431 2464445
Q ss_pred CceEEe-eCCCCeEeEEEEEEEEEEecCCCCc---eeeccEEEEeeeCCCCcccccCCccceeeecCCCCChhhhhhhhh
Q 037429 170 CVYSVG-YGGGGTTKGVASFESFRFATDSSSA---TTVDNIIFGCSNDNQNIQFASRGVISGILGLSSSPDSIVMQLSDV 245 (402)
Q Consensus 170 ~~~~~~-Y~dGs~~~G~~~~D~v~~~~~~~~~---~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~ 245 (402)
|.|... |++|+.+.|.+++|+|+|+..++.. ..++++.|||++..... .+....|||||||++++|+++||..+
T Consensus 68 C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~--~~~~~~dGIlGLg~~~lSl~sql~~~ 145 (362)
T cd05489 68 CTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLK--GLPPGAQGVAGLGRSPLSLPAQLASA 145 (362)
T ss_pred CeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCccccc--CCccccccccccCCCccchHHHhhhh
Confidence 988765 8899899999999999998754432 36889999999876421 12245899999999999999999876
Q ss_pred --ccCceEEeeccCCCCCCCCceEEECCCCCCC-------CCCeeeeeecCCCC-CceeEEEEEEEEECCEEeeeccccc
Q 037429 246 --VDKRFSYCLVPFTDALMAPSIVKFGNDIPPL-------SGTVQATTFVPPPG-SFYYHLSLIDISVGTRRSRSVTTTL 315 (402)
Q Consensus 246 --~~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~-------~~~~~~tp~~~~~~-~~~y~v~l~~i~vg~~~~~~~~~~~ 315 (402)
..++|||||++. ....|.|+||+.+..+ .+.+.||||+.++. +.+|+|+|++|+||++++.+++..+
T Consensus 146 ~~~~~~FS~CL~~~---~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~ 222 (362)
T cd05489 146 FGVARKFALCLPSS---PGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLS 222 (362)
T ss_pred cCCCcceEEEeCCC---CCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhc
Confidence 358999999874 2458999999977543 26799999998753 5699999999999999998876655
Q ss_pred c-cccCCCCeeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCC-----CccccEEEEEEc
Q 037429 316 A-RSRTVTNDLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPG-----FNNFASFTYHFD 387 (402)
Q Consensus 316 ~-~~~~~~~~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~-----~~~~P~i~f~f~ 387 (402)
+ ...+.+++| ||| ++++||+++|++|.++|.+++... +.........+.||..... ...+|+|+|||+
T Consensus 223 ~~~~~~~~g~i--iDSGTs~t~lp~~~y~~l~~a~~~~~~~~--~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~ 298 (362)
T cd05489 223 ANDRLGPGGVK--LSTVVPYTVLRSDIYRAFTQAFAKATARI--PRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLD 298 (362)
T ss_pred cccccCCCcEE--EecCCceEEECHHHHHHHHHHHHHHhccc--CcCCCCCCCcCccccCCCcCCcccccccceEEEEEe
Confidence 4 345667899 999 999999999999999999887632 2211111123689986431 257999999998
Q ss_pred C--cEEEEccc-cccc
Q 037429 388 G--ASYDIEGK-FVNL 400 (402)
Q Consensus 388 G--~~~~l~~~-yi~~ 400 (402)
| ++|+||++ |+..
T Consensus 299 g~g~~~~l~~~ny~~~ 314 (362)
T cd05489 299 GGGVNWTIFGANSMVQ 314 (362)
T ss_pred CCCeEEEEcCCceEEE
Confidence 6 99999999 8765
No 6
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.3e-44 Score=348.98 Aligned_cols=254 Identities=19% Similarity=0.346 Sum_probs=209.4
Q ss_pred CeEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCCCCce
Q 037429 93 GFYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQCVY 172 (402)
Q Consensus 93 ~~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~~~~ 172 (402)
|..|+++|.||||||++.|+|||||+++||+|..|..+.|..++.|||++|+||+.. + |.|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~-----------~--------~~~ 61 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTN-----------G--------ETF 61 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceEC-----------C--------cEE
Confidence 468999999999999999999999999999999998777777889999999999872 3 899
Q ss_pred EEeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCccccc-CCccceeeecCCCC------Chhhhhhhhh
Q 037429 173 SVGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFAS-RGVISGILGLSSSP------DSIVMQLSDV 245 (402)
Q Consensus 173 ~~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~-~~~~~GIlGLg~~~------~s~~~ql~~~ 245 (402)
++.|++|+. .|.+++|+|++++. .++++.|||++...+. .+ ....+||||||++. .++++||.++
T Consensus 62 ~~~Yg~Gs~-~G~~~~D~i~~g~~-----~i~~~~Fg~~~~~~~~--~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~ 133 (318)
T cd05477 62 SLQYGSGSL-TGIFGYDTVTVQGI-----IITNQEFGLSETEPGT--NFVYAQFDGILGLAYPSISAGGATTVMQGMMQQ 133 (318)
T ss_pred EEEECCcEE-EEEEEeeEEEECCE-----EEcCEEEEEEEecccc--cccccceeeEeecCcccccccCCCCHHHHHHhc
Confidence 999999986 59999999999987 8999999999987652 12 24579999999864 4567788877
Q ss_pred --c-cCceEEeeccCCCCCCCCceEEECCCCCCC-CCCeeeeeecCCCCCceeEEEEEEEEECCEEeeecccccccccCC
Q 037429 246 --V-DKRFSYCLVPFTDALMAPSIVKFGNDIPPL-SGTVQATTFVPPPGSFYYHLSLIDISVGTRRSRSVTTTLARSRTV 321 (402)
Q Consensus 246 --~-~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~-~~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~ 321 (402)
+ .++||+||.+.. ....|.|+||+.|+.+ .+.+.|+|+... .+|.|+|++|+||++.+.... .+
T Consensus 134 g~i~~~~FS~~L~~~~--~~~~g~l~fGg~d~~~~~g~l~~~pv~~~---~~w~v~l~~i~v~g~~~~~~~-------~~ 201 (318)
T cd05477 134 NLLQAPIFSFYLSGQQ--GQQGGELVFGGVDNNLYTGQIYWTPVTSE---TYWQIGIQGFQINGQATGWCS-------QG 201 (318)
T ss_pred CCcCCCEEEEEEcCCC--CCCCCEEEEcccCHHHcCCceEEEecCCc---eEEEEEeeEEEECCEEecccC-------CC
Confidence 3 689999998742 2357999999988765 466999999753 599999999999999875421 23
Q ss_pred CCeeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCC-CccccEEEEEEcCcEEEEccc-c
Q 037429 322 TNDLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPG-FNNFASFTYHFDGASYDIEGK-F 397 (402)
Q Consensus 322 ~~~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~P~i~f~f~G~~~~l~~~-y 397 (402)
.++| ||| +++++|+++|++|.+++.++... ..+|..+|. ..++|+|+|+|+|+++.||++ |
T Consensus 202 ~~~i--iDSGtt~~~lP~~~~~~l~~~~~~~~~~-------------~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y 266 (318)
T cd05477 202 CQAI--VDTGTSLLTAPQQVMSTLMQSIGAQQDQ-------------YGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAY 266 (318)
T ss_pred ceee--ECCCCccEECCHHHHHHHHHHhCCcccc-------------CCCEEEeCCccccCCcEEEEECCEEEEECHHHe
Confidence 4689 999 99999999999999888554321 125566665 256899999999999999999 8
Q ss_pred ccc
Q 037429 398 VNL 400 (402)
Q Consensus 398 i~~ 400 (402)
+..
T Consensus 267 ~~~ 269 (318)
T cd05477 267 ILQ 269 (318)
T ss_pred Eec
Confidence 764
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.6e-44 Score=349.66 Aligned_cols=256 Identities=21% Similarity=0.336 Sum_probs=204.5
Q ss_pred cCCeEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCc--ccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCC
Q 037429 91 REGFYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNC--YRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQ 168 (402)
Q Consensus 91 ~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C--~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~ 168 (402)
+.+.+|+++|.||||||++.|+|||||+++||+|..|..| .|..++.|||++|+||+. .+
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~-----------~~------- 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVK-----------NG------- 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceee-----------CC-------
Confidence 5689999999999999999999999999999999999743 445678999999999987 12
Q ss_pred CCceEEeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCccccc-CCccceeeecCCCCChh------hhh
Q 037429 169 QCVYSVGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFAS-RGVISGILGLSSSPDSI------VMQ 241 (402)
Q Consensus 169 ~~~~~~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~-~~~~~GIlGLg~~~~s~------~~q 241 (402)
|.|.+.|++|+. .|.+++|+|+|++. .++++.|||++...+. .| ....+||||||++..+. +++
T Consensus 64 -~~~~i~Yg~G~~-~G~~~~D~v~~g~~-----~~~~~~Fg~~~~~~~~--~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 134 (325)
T cd05490 64 -TEFAIQYGSGSL-SGYLSQDTVSIGGL-----QVEGQLFGEAVKQPGI--TFIAAKFDGILGMAYPRISVDGVTPVFDN 134 (325)
T ss_pred -cEEEEEECCcEE-EEEEeeeEEEECCE-----EEcCEEEEEEeeccCC--cccceeeeEEEecCCccccccCCCCHHHH
Confidence 899999999985 69999999999987 8999999999887652 23 24679999999987653 457
Q ss_pred hhhh--c-cCceEEeeccCCCCCCCCceEEECCCCCCC-CCCeeeeeecCCCCCceeEEEEEEEEECCEEeeeccccccc
Q 037429 242 LSDV--V-DKRFSYCLVPFTDALMAPSIVKFGNDIPPL-SGTVQATTFVPPPGSFYYHLSLIDISVGTRRSRSVTTTLAR 317 (402)
Q Consensus 242 l~~~--~-~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~-~~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~ 317 (402)
|.++ + .++||+||.+.. +....|.|+||+.|+.+ .+.+.|+|+.. ..+|.|+|++|+||++....
T Consensus 135 l~~~g~i~~~~FS~~L~~~~-~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~---~~~w~v~l~~i~vg~~~~~~------- 203 (325)
T cd05490 135 IMAQKLVEQNVFSFYLNRDP-DAQPGGELMLGGTDPKYYTGDLHYVNVTR---KAYWQIHMDQVDVGSGLTLC------- 203 (325)
T ss_pred HHhcCCCCCCEEEEEEeCCC-CCCCCCEEEECccCHHHcCCceEEEEcCc---ceEEEEEeeEEEECCeeeec-------
Confidence 7766 3 689999998642 12347999999988765 46799999865 35999999999999874322
Q ss_pred ccCCCCeeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCC-CccccEEEEEEcCcEEEEc
Q 037429 318 SRTVTNDLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPG-FNNFASFTYHFDGASYDIE 394 (402)
Q Consensus 318 ~~~~~~~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~P~i~f~f~G~~~~l~ 394 (402)
....++| ||| +++++|+++|++|.+++.+. . .. ..+|..+|+ ...+|+|+|+|+|++++|+
T Consensus 204 -~~~~~ai--iDSGTt~~~~p~~~~~~l~~~~~~~-~-----~~-------~~~~~~~C~~~~~~P~i~f~fgg~~~~l~ 267 (325)
T cd05490 204 -KGGCEAI--VDTGTSLITGPVEEVRALQKAIGAV-P-----LI-------QGEYMIDCEKIPTLPVISFSLGGKVYPLT 267 (325)
T ss_pred -CCCCEEE--ECCCCccccCCHHHHHHHHHHhCCc-c-----cc-------CCCEEecccccccCCCEEEEECCEEEEEC
Confidence 1235689 999 99999999999998877432 1 11 123445554 2578999999999999999
Q ss_pred cc-cccc
Q 037429 395 GK-FVNL 400 (402)
Q Consensus 395 ~~-yi~~ 400 (402)
++ |+..
T Consensus 268 ~~~y~~~ 274 (325)
T cd05490 268 GEDYILK 274 (325)
T ss_pred hHHeEEe
Confidence 99 8753
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=3.4e-44 Score=348.06 Aligned_cols=254 Identities=20% Similarity=0.313 Sum_probs=208.1
Q ss_pred ccCCeEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCCC
Q 037429 90 LREGFYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQ 169 (402)
Q Consensus 90 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~ 169 (402)
++.+.+|+++|.||||+|++.|+|||||+++||+|..|..+.|..++.|+|++|+||+. .+
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~-----------~~-------- 65 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKA-----------NG-------- 65 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceee-----------CC--------
Confidence 66789999999999999999999999999999999999866666778999999999986 23
Q ss_pred CceEEeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCccccc-CCccceeeecCCCCChhh------hhh
Q 037429 170 CVYSVGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFAS-RGVISGILGLSSSPDSIV------MQL 242 (402)
Q Consensus 170 ~~~~~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~-~~~~~GIlGLg~~~~s~~------~ql 242 (402)
|.|.+.|++|+. .|.+++|+|++++. .++++.|||++...+. .+ ....+||||||++..+.. .+|
T Consensus 66 ~~~~~~y~~g~~-~G~~~~D~v~ig~~-----~~~~~~f~~a~~~~g~--~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 137 (320)
T cd05488 66 TEFKIQYGSGSL-EGFVSQDTLSIGDL-----TIKKQDFAEATSEPGL--AFAFGKFDGILGLAYDTISVNKIVPPFYNM 137 (320)
T ss_pred CEEEEEECCceE-EEEEEEeEEEECCE-----EECCEEEEEEecCCCc--ceeeeeeceEEecCCccccccCCCCHHHHH
Confidence 899999999985 69999999999887 8899999999877662 22 246799999999877654 245
Q ss_pred hhh--c-cCceEEeeccCCCCCCCCceEEECCCCCCC-CCCeeeeeecCCCCCceeEEEEEEEEECCEEeeecccccccc
Q 037429 243 SDV--V-DKRFSYCLVPFTDALMAPSIVKFGNDIPPL-SGTVQATTFVPPPGSFYYHLSLIDISVGTRRSRSVTTTLARS 318 (402)
Q Consensus 243 ~~~--~-~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~-~~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~ 318 (402)
.++ + .++||+||.+.. ...|.|+||++|+.+ .+++.|+|+.. ..+|.|++++|+||++.+...
T Consensus 138 ~~qg~i~~~~FS~~L~~~~---~~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~w~v~l~~i~vg~~~~~~~------- 204 (320)
T cd05488 138 INQGLLDEPVFSFYLGSSE---EDGGEATFGGIDESRFTGKITWLPVRR---KAYWEVELEKIGLGDEELELE------- 204 (320)
T ss_pred HhcCCCCCCEEEEEecCCC---CCCcEEEECCcCHHHcCCceEEEeCCc---CcEEEEEeCeEEECCEEeccC-------
Confidence 554 3 589999999742 457999999998765 46799999975 349999999999999877542
Q ss_pred cCCCCeeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCC-CccccEEEEEEcCcEEEEcc
Q 037429 319 RTVTNDLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPG-FNNFASFTYHFDGASYDIEG 395 (402)
Q Consensus 319 ~~~~~~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~P~i~f~f~G~~~~l~~ 395 (402)
..++| ||| ++++||++++++|.+++.+... ...+|..+|. ...+|.|+|+|+|++++||+
T Consensus 205 --~~~~i--vDSGtt~~~lp~~~~~~l~~~~~~~~~-------------~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~ 267 (320)
T cd05488 205 --NTGAA--IDTGTSLIALPSDLAEMLNAEIGAKKS-------------WNGQYTVDCSKVDSLPDLTFNFDGYNFTLGP 267 (320)
T ss_pred --CCeEE--EcCCcccccCCHHHHHHHHHHhCCccc-------------cCCcEEeeccccccCCCEEEEECCEEEEECH
Confidence 34688 999 9999999999998887743211 1235555665 25789999999999999999
Q ss_pred c-cccc
Q 037429 396 K-FVNL 400 (402)
Q Consensus 396 ~-yi~~ 400 (402)
+ |+..
T Consensus 268 ~~y~~~ 273 (320)
T cd05488 268 FDYTLE 273 (320)
T ss_pred HHheec
Confidence 9 8764
No 9
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=5.8e-44 Score=343.29 Aligned_cols=243 Identities=29% Similarity=0.509 Sum_probs=202.0
Q ss_pred EEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCCCCceEE
Q 037429 95 YYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQCVYSV 174 (402)
Q Consensus 95 ~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~~~~~~ 174 (402)
+|+++|.||||||++.|+|||||+++||+|.+| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------------------------~~~~i 38 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------------------------CLYQV 38 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------------------------Ceeee
Confidence 599999999999999999999999999988655 46899
Q ss_pred eeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCcccccCCccceeeecCCCCChhhhhhhhhccCceEEee
Q 037429 175 GYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFASRGVISGILGLSSSPDSIVMQLSDVVDKRFSYCL 254 (402)
Q Consensus 175 ~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~~FS~~l 254 (402)
.|++|+.++|.+++|+|+|++.. .++++.|||++..++ .+ ...+||||||+..+++++|+..+.+++||+||
T Consensus 39 ~Yg~Gs~~~G~~~~D~v~ig~~~----~~~~~~Fg~~~~~~~---~~-~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L 110 (299)
T cd05472 39 SYGDGSYTTGDLATDTLTLGSSD----VVPGFAFGCGHDNEG---LF-GGAAGLLGLGRGKLSLPSQTASSYGGVFSYCL 110 (299)
T ss_pred EeCCCceEEEEEEEEEEEeCCCC----ccCCEEEECCccCCC---cc-CCCCEEEECCCCcchHHHHhhHhhcCceEEEc
Confidence 99999988899999999998741 578999999998877 44 36899999999999999999877779999999
Q ss_pred ccCCCCCCCCceEEECCCCCCCCCCeeeeeecCCCC-CceeEEEEEEEEECCEEeeecccccccccCCCCeeeeecC--C
Q 037429 255 VPFTDALMAPSIVKFGNDIPPLSGTVQATTFVPPPG-SFYYHLSLIDISVGTRRSRSVTTTLARSRTVTNDLPGYDS--D 331 (402)
Q Consensus 255 ~~~~~~~~~~G~l~fG~~~~~~~~~~~~tp~~~~~~-~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~i~~iDS--t 331 (402)
++.. ....|+|+||+.|+. .+++.|+|++.++. +.+|.|+|++|+||++.+.++... ...+++| ||| +
T Consensus 111 ~~~~--~~~~G~l~fGg~d~~-~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~----~~~~~~i--vDSGTt 181 (299)
T cd05472 111 PDRS--SSSSGYLSFGAAASV-PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS----FGAGGVI--IDSGTV 181 (299)
T ss_pred cCCC--CCCCceEEeCCcccc-CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc----cCCCCeE--EeCCCc
Confidence 8742 245899999999887 77899999998753 569999999999999988654221 2346799 999 9
Q ss_pred cccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCC-CccccEEEEEEc-CcEEEEccc-ccc
Q 037429 332 QTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPG-FNNFASFTYHFD-GASYDIEGK-FVN 399 (402)
Q Consensus 332 ~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~P~i~f~f~-G~~~~l~~~-yi~ 399 (402)
+++||+++|++|.+++.+++.. ..+. .....++.||..++. ...+|+|+|+|+ |++++||++ |+.
T Consensus 182 ~~~lp~~~~~~l~~~l~~~~~~--~~~~-~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~ 249 (299)
T cd05472 182 ITRLPPSAYAALRDAFRAAMAA--YPRA-PGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLY 249 (299)
T ss_pred ceecCHHHHHHHHHHHHHHhcc--CCCC-CCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEE
Confidence 9999999999999999887642 1111 112234469987665 357999999998 899999999 875
No 10
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.3e-43 Score=344.70 Aligned_cols=252 Identities=27% Similarity=0.415 Sum_probs=204.2
Q ss_pred eEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCCCCceE
Q 037429 94 FYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQCVYS 173 (402)
Q Consensus 94 ~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~~~~~ 173 (402)
++|+++|.||||+|++.|+|||||+++||+|..|..|.++.++.|||++|+|++.++|++..|... ..|..+.|.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~---~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCYC---LSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCcccccc---CcCCCCcCcEE
Confidence 689999999999999999999999999999999999998888999999999999999999999532 35766569999
Q ss_pred EeeCCCCeEeEEEEEEEEEEecCCCC--ceeeccEEEEeeeCCCCccccc-CCccceeeecCCCCChhh----hhhhhh-
Q 037429 174 VGYGGGGTTKGVASFESFRFATDSSS--ATTVDNIIFGCSNDNQNIQFAS-RGVISGILGLSSSPDSIV----MQLSDV- 245 (402)
Q Consensus 174 ~~Y~dGs~~~G~~~~D~v~~~~~~~~--~~~~~~~~fG~~~~~~~~~~~~-~~~~~GIlGLg~~~~s~~----~ql~~~- 245 (402)
+.|++|+.+.|.+++|+|+|++.... .....++.|||+....+ .| ....+||||||+...+-. .+|.++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~---~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN---LFLTQQATGILGLSLTKNNGLPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC---cccccccceEEEccCCcccccCchhHHHHHhc
Confidence 99999998889999999999876321 01122578999998776 44 356899999999875321 122222
Q ss_pred --c--cCceEEeeccCCCCCCCCceEEECCCCCCCC-----------CCeeeeeecCCCCCceeEEEEEEEEECCEEeee
Q 037429 246 --V--DKRFSYCLVPFTDALMAPSIVKFGNDIPPLS-----------GTVQATTFVPPPGSFYYHLSLIDISVGTRRSRS 310 (402)
Q Consensus 246 --~--~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~~-----------~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~ 310 (402)
. .++||+||++ ..|.|+||++|+.+. +++.|+|+... .+|.|++++|+|+++....
T Consensus 156 ~~~~~~~~FS~~l~~------~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~---~~y~v~l~~i~vg~~~~~~ 226 (326)
T cd06096 156 PKLKKDKIFSICLSE------DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK---YYYYVKLEGLSVYGTTSNS 226 (326)
T ss_pred ccccCCceEEEEEcC------CCeEEEECccChhhhcccccccccccCCceEEeccCC---ceEEEEEEEEEEcccccce
Confidence 1 3899999985 259999999886542 57999999864 4999999999999886111
Q ss_pred cccccccccCCCCeeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCccccEEEEEEc-
Q 037429 311 VTTTLARSRTVTNDLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPGFNNFASFTYHFD- 387 (402)
Q Consensus 311 ~~~~~~~~~~~~~~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~- 387 (402)
. ......+| ||| ++++||+++|++|.+++ |+|+|+|+
T Consensus 227 ~------~~~~~~ai--vDSGTs~~~lp~~~~~~l~~~~--------------------------------P~i~~~f~~ 266 (326)
T cd06096 227 G------NTKGLGML--VDSGSTLSHFPEDLYNKINNFF--------------------------------PTITIIFEN 266 (326)
T ss_pred e------cccCCCEE--EeCCCCcccCCHHHHHHHHhhc--------------------------------CcEEEEEcC
Confidence 1 12356799 999 99999999999986544 79999999
Q ss_pred CcEEEEccc-cccc
Q 037429 388 GASYDIEGK-FVNL 400 (402)
Q Consensus 388 G~~~~l~~~-yi~~ 400 (402)
|++++|+|+ |+..
T Consensus 267 g~~~~i~p~~y~~~ 280 (326)
T cd06096 267 NLKIDWKPSSYLYK 280 (326)
T ss_pred CcEEEECHHHhccc
Confidence 899999999 8753
No 11
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1e-43 Score=344.11 Aligned_cols=250 Identities=20% Similarity=0.268 Sum_probs=202.5
Q ss_pred EEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCCCCceEEe
Q 037429 96 YIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQCVYSVG 175 (402)
Q Consensus 96 Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~~~~~~~ 175 (402)
|+++|+||||||++.|+|||||+++||+|..|..+.|..++.|||++|+||+.. + |.|++.
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~-----------~--------~~~~i~ 61 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSN-----------G--------EAFSIQ 61 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccC-----------C--------cEEEEE
Confidence 899999999999999999999999999999998655667889999999999873 2 899999
Q ss_pred eCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCccccc-CCccceeeecCCCCCh------hhhhhhhh--c
Q 037429 176 YGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFAS-RGVISGILGLSSSPDS------IVMQLSDV--V 246 (402)
Q Consensus 176 Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~-~~~~~GIlGLg~~~~s------~~~ql~~~--~ 246 (402)
|++|+. .|.+++|+|+|++. .++++.|||+....+. .| ....+||||||++..+ +.++|.+| +
T Consensus 62 Yg~g~~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~--~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i 133 (316)
T cd05486 62 YGTGSL-TGIIGIDQVTVEGI-----TVQNQQFAESVSEPGS--TFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLV 133 (316)
T ss_pred eCCcEE-EEEeeecEEEECCE-----EEcCEEEEEeeccCcc--cccccccceEeccCchhhccCCCCCHHHHHHhcCCC
Confidence 999985 59999999999986 8999999998876652 23 3468999999997765 35677766 3
Q ss_pred -cCceEEeeccCCCCCCCCceEEECCCCCCC-CCCeeeeeecCCCCCceeEEEEEEEEECCEEeeecccccccccCCCCe
Q 037429 247 -DKRFSYCLVPFTDALMAPSIVKFGNDIPPL-SGTVQATTFVPPPGSFYYHLSLIDISVGTRRSRSVTTTLARSRTVTND 324 (402)
Q Consensus 247 -~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~-~~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~ 324 (402)
.++||+||.+.. +....|.|+||+.|+.+ .+++.|+|+.. ..+|.|++++|+||++.+... ....+
T Consensus 134 ~~~~FS~~L~~~~-~~~~~g~l~fGg~d~~~~~g~l~~~pi~~---~~~w~v~l~~i~v~g~~~~~~--------~~~~a 201 (316)
T cd05486 134 ELPMFSVYMSRNP-NSADGGELVFGGFDTSRFSGQLNWVPVTV---QGYWQIQLDNIQVGGTVIFCS--------DGCQA 201 (316)
T ss_pred CCCEEEEEEccCC-CCCCCcEEEEcccCHHHcccceEEEECCC---ceEEEEEeeEEEEecceEecC--------CCCEE
Confidence 578999998642 12357999999988765 46799999875 359999999999999876432 13468
Q ss_pred eeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCC-CccccEEEEEEcCcEEEEccc-cccc
Q 037429 325 LPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPG-FNNFASFTYHFDGASYDIEGK-FVNL 400 (402)
Q Consensus 325 i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~P~i~f~f~G~~~~l~~~-yi~~ 400 (402)
| ||| +++++|++++++|.+++.+... +.+|..+|+ ...+|+|+|+|+|++++|+++ |+..
T Consensus 202 i--iDTGTs~~~lP~~~~~~l~~~~~~~~~--------------~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~ 265 (316)
T cd05486 202 I--VDTGTSLITGPSGDIKQLQNYIGATAT--------------DGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLE 265 (316)
T ss_pred E--ECCCcchhhcCHHHHHHHHHHhCCccc--------------CCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEe
Confidence 9 999 9999999999998776633210 124555554 257899999999999999999 8764
No 12
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=7.4e-43 Score=339.85 Aligned_cols=256 Identities=20% Similarity=0.297 Sum_probs=207.1
Q ss_pred ccCCeEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCc--ccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCC
Q 037429 90 LREGFYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNC--YRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVD 167 (402)
Q Consensus 90 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C--~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~ 167 (402)
++.+.+|+++|.||||+|++.|++||||+++||+|..|..| .|..++.|||++|+||+.. +
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~-----------~------ 68 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKN-----------G------ 68 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEEC-----------C------
Confidence 77899999999999999999999999999999999999743 2345678999999999873 2
Q ss_pred CCCceEEeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCccccc-CCccceeeecCCCCChh------hh
Q 037429 168 QQCVYSVGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFAS-RGVISGILGLSSSPDSI------VM 240 (402)
Q Consensus 168 ~~~~~~~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~-~~~~~GIlGLg~~~~s~------~~ 240 (402)
|.|.+.|++|+. .|.+++|+|+|++. .++++.|||+....+. .| ....+||||||++..+. ..
T Consensus 69 --~~~~i~Y~~g~~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~--~~~~~~~~GilGLg~~~~s~~~~~p~~~ 138 (329)
T cd05485 69 --TEFAIQYGSGSL-SGFLSTDTVSVGGV-----SVKGQTFAEAINEPGL--TFVAAKFDGILGMGYSSISVDGVVPVFY 138 (329)
T ss_pred --eEEEEEECCceE-EEEEecCcEEECCE-----EECCEEEEEEEecCCc--cccccccceEEEcCCccccccCCCCHHH
Confidence 899999999985 69999999999987 8899999999876652 23 34689999999987653 46
Q ss_pred hhhhh--c-cCceEEeeccCCCCCCCCceEEECCCCCCC-CCCeeeeeecCCCCCceeEEEEEEEEECCEEeeecccccc
Q 037429 241 QLSDV--V-DKRFSYCLVPFTDALMAPSIVKFGNDIPPL-SGTVQATTFVPPPGSFYYHLSLIDISVGTRRSRSVTTTLA 316 (402)
Q Consensus 241 ql~~~--~-~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~-~~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~ 316 (402)
||.++ + .++||+||.+.. .....|.|+||+.|+.+ .+++.|+|+.. +.+|.|++++|+|+++.+..
T Consensus 139 ~l~~qg~i~~~~FS~~l~~~~-~~~~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~~~v~~~~i~v~~~~~~~------ 208 (329)
T cd05485 139 NMVNQKLVDAPVFSFYLNRDP-SAKEGGELILGGSDPKHYTGNFTYLPVTR---KGYWQFKMDSVSVGEGEFCS------ 208 (329)
T ss_pred HHHhCCCCCCCEEEEEecCCC-CCCCCcEEEEcccCHHHcccceEEEEcCC---ceEEEEEeeEEEECCeeecC------
Confidence 77766 3 589999998642 12347999999998765 47799999975 45999999999999986531
Q ss_pred cccCCCCeeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCC-CccccEEEEEEcCcEEEE
Q 037429 317 RSRTVTNDLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPG-FNNFASFTYHFDGASYDI 393 (402)
Q Consensus 317 ~~~~~~~~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~P~i~f~f~G~~~~l 393 (402)
...++| ||| +++++|+++|++|.+++.+.. . ...||..+|+ ..++|+|+|+|+|++++|
T Consensus 209 ---~~~~~i--iDSGtt~~~lP~~~~~~l~~~~~~~~-------~------~~~~~~~~C~~~~~~p~i~f~fgg~~~~i 270 (329)
T cd05485 209 ---GGCQAI--ADTGTSLIAGPVDEIEKLNNAIGAKP-------I------IGGEYMVNCSAIPSLPDITFVLGGKSFSL 270 (329)
T ss_pred ---CCcEEE--EccCCcceeCCHHHHHHHHHHhCCcc-------c------cCCcEEEeccccccCCcEEEEECCEEeEE
Confidence 234688 999 999999999999888774321 1 0135666666 356899999999999999
Q ss_pred ccc-cccc
Q 037429 394 EGK-FVNL 400 (402)
Q Consensus 394 ~~~-yi~~ 400 (402)
|++ ||..
T Consensus 271 ~~~~yi~~ 278 (329)
T cd05485 271 TGKDYVLK 278 (329)
T ss_pred ChHHeEEE
Confidence 999 8764
No 13
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=5.1e-42 Score=332.32 Aligned_cols=245 Identities=21% Similarity=0.341 Sum_probs=199.7
Q ss_pred ccCCeEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCC---CcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCC
Q 037429 90 LREGFYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCK---NCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCV 166 (402)
Q Consensus 90 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~---~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~ 166 (402)
++.+.+|+++|+||||||++.|+|||||+++||+|..|. .|. .++.|||++|+||+.. +
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~-----------~----- 66 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYKSSKSSTYKKN-----------G----- 66 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccc--ccCcCCcccCCCcccC-----------C-----
Confidence 778999999999999999999999999999999999996 464 5678999999999873 2
Q ss_pred CCCCceEEeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCccccc-CCccceeeecCCCCChh------h
Q 037429 167 DQQCVYSVGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFAS-RGVISGILGLSSSPDSI------V 239 (402)
Q Consensus 167 ~~~~~~~~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~-~~~~~GIlGLg~~~~s~------~ 239 (402)
+.+.+.|++|+. .|.+++|+|++++. .++++.|||++...+. .| ....+||||||++..+. .
T Consensus 67 ---~~~~i~Yg~G~~-~G~~~~D~v~ig~~-----~v~~~~f~~~~~~~~~--~~~~~~~dGilGLg~~~~s~~~~~~~~ 135 (317)
T cd06098 67 ---TSASIQYGTGSI-SGFFSQDSVTVGDL-----VVKNQVFIEATKEPGL--TFLLAKFDGILGLGFQEISVGKAVPVW 135 (317)
T ss_pred ---CEEEEEcCCceE-EEEEEeeEEEECCE-----EECCEEEEEEEecCCc--cccccccceeccccccchhhcCCCCHH
Confidence 788999999986 59999999999987 8999999999876542 23 35689999999986653 3
Q ss_pred hhhhhh--c-cCceEEeeccCCCCCCCCceEEECCCCCCC-CCCeeeeeecCCCCCceeEEEEEEEEECCEEeeeccccc
Q 037429 240 MQLSDV--V-DKRFSYCLVPFTDALMAPSIVKFGNDIPPL-SGTVQATTFVPPPGSFYYHLSLIDISVGTRRSRSVTTTL 315 (402)
Q Consensus 240 ~ql~~~--~-~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~-~~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ 315 (402)
.+|.++ + .++||+||.+.. .....|.|+||+.|+.+ .+++.|+|+.. ..+|.|.+++|+||++.+....
T Consensus 136 ~~l~~qg~i~~~~FS~~L~~~~-~~~~~G~l~fGg~d~~~~~g~l~~~pv~~---~~~w~v~l~~i~v~g~~~~~~~--- 208 (317)
T cd06098 136 YNMVEQGLVKEPVFSFWLNRNP-DEEEGGELVFGGVDPKHFKGEHTYVPVTR---KGYWQFEMGDVLIGGKSTGFCA--- 208 (317)
T ss_pred HHHHhcCCCCCCEEEEEEecCC-CCCCCcEEEECccChhhcccceEEEecCc---CcEEEEEeCeEEECCEEeeecC---
Confidence 466665 3 579999998642 12357999999998775 47799999975 3599999999999998875432
Q ss_pred ccccCCCCeeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCccccEEEEEEcCcEEEE
Q 037429 316 ARSRTVTNDLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPGFNNFASFTYHFDGASYDI 393 (402)
Q Consensus 316 ~~~~~~~~~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~G~~~~l 393 (402)
....+| ||| +++++|+++++++. . ...|+.. .++|+|+|+|+|++++|
T Consensus 209 ----~~~~ai--vDTGTs~~~lP~~~~~~i~-------~-------------~~~C~~~----~~~P~i~f~f~g~~~~l 258 (317)
T cd06098 209 ----GGCAAI--ADSGTSLLAGPTTIVTQIN-------S-------------AVDCNSL----SSMPNVSFTIGGKTFEL 258 (317)
T ss_pred ----CCcEEE--EecCCcceeCCHHHHHhhh-------c-------------cCCcccc----ccCCcEEEEECCEEEEE
Confidence 234688 999 99999998776643 1 1247765 56899999999999999
Q ss_pred ccc-cccc
Q 037429 394 EGK-FVNL 400 (402)
Q Consensus 394 ~~~-yi~~ 400 (402)
+++ |+..
T Consensus 259 ~~~~yi~~ 266 (317)
T cd06098 259 TPEQYILK 266 (317)
T ss_pred ChHHeEEe
Confidence 999 8853
No 14
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=8.1e-42 Score=332.26 Aligned_cols=255 Identities=17% Similarity=0.285 Sum_probs=204.4
Q ss_pred ccCCeEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCc--ccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCC
Q 037429 90 LREGFYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNC--YRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVD 167 (402)
Q Consensus 90 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C--~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~ 167 (402)
++.+.+|+++|+||||+|+++|+|||||+++||+|..|..| .|..++.|||++|+||+.. +
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~-----------~------ 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKEN-----------G------ 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeEC-----------C------
Confidence 56789999999999999999999999999999999989763 4567789999999999873 3
Q ss_pred CCCceEEeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCccccc-CCccceeeecCCCCCh------hhh
Q 037429 168 QQCVYSVGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFAS-RGVISGILGLSSSPDS------IVM 240 (402)
Q Consensus 168 ~~~~~~~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~-~~~~~GIlGLg~~~~s------~~~ 240 (402)
|.|++.|++|+ +.|.+++|+|++++. .+ ++.|||+....+. .| ....+||||||++..+ ++.
T Consensus 66 --~~~~~~Yg~g~-~~G~~~~D~v~~g~~-----~~-~~~fg~~~~~~~~--~~~~~~~dGilGLg~~~~s~~~~~~~~~ 134 (326)
T cd05487 66 --TEFTIHYASGT-VKGFLSQDIVTVGGI-----PV-TQMFGEVTALPAI--PFMLAKFDGVLGMGYPKQAIGGVTPVFD 134 (326)
T ss_pred --EEEEEEeCCce-EEEEEeeeEEEECCE-----Ee-eEEEEEEEeccCC--ccceeecceEEecCChhhcccCCCCHHH
Confidence 89999999998 469999999999976 56 4889999876432 22 2468999999987654 345
Q ss_pred hhhhh--c-cCceEEeeccCCCCCCCCceEEECCCCCCCC-CCeeeeeecCCCCCceeEEEEEEEEECCEEeeecccccc
Q 037429 241 QLSDV--V-DKRFSYCLVPFTDALMAPSIVKFGNDIPPLS-GTVQATTFVPPPGSFYYHLSLIDISVGTRRSRSVTTTLA 316 (402)
Q Consensus 241 ql~~~--~-~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~~-~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~ 316 (402)
+|..| + .++||+||.+.. .....|.|+||+.|+.+. +++.|+|+.. ..+|.|++++|+||++.+...
T Consensus 135 ~L~~qg~i~~~~FS~~L~~~~-~~~~~G~l~fGg~d~~~y~g~l~~~~~~~---~~~w~v~l~~i~vg~~~~~~~----- 205 (326)
T cd05487 135 NIMSQGVLKEDVFSVYYSRDS-SHSLGGEIVLGGSDPQHYQGDFHYINTSK---TGFWQIQMKGVSVGSSTLLCE----- 205 (326)
T ss_pred HHHhcCCCCCCEEEEEEeCCC-CCCCCcEEEECCcChhhccCceEEEECCc---CceEEEEecEEEECCEEEecC-----
Confidence 66666 3 689999998742 124579999999987764 6699999865 359999999999999876432
Q ss_pred cccCCCCeeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCC-CccccEEEEEEcCcEEEE
Q 037429 317 RSRTVTNDLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPG-FNNFASFTYHFDGASYDI 393 (402)
Q Consensus 317 ~~~~~~~~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~P~i~f~f~G~~~~l 393 (402)
.+..+| ||| +++++|+++|++|.+++.+... ..+|..+|+ ...+|+|+|+|+|++++|
T Consensus 206 ---~~~~ai--iDSGts~~~lP~~~~~~l~~~~~~~~~--------------~~~y~~~C~~~~~~P~i~f~fgg~~~~v 266 (326)
T cd05487 206 ---DGCTAV--VDTGASFISGPTSSISKLMEALGAKER--------------LGDYVVKCNEVPTLPDISFHLGGKEYTL 266 (326)
T ss_pred ---CCCEEE--ECCCccchhCcHHHHHHHHHHhCCccc--------------CCCEEEeccccCCCCCEEEEECCEEEEe
Confidence 134688 999 9999999999999888743211 124455555 256899999999999999
Q ss_pred ccc-cccc
Q 037429 394 EGK-FVNL 400 (402)
Q Consensus 394 ~~~-yi~~ 400 (402)
|++ |+..
T Consensus 267 ~~~~yi~~ 274 (326)
T cd05487 267 SSSDYVLQ 274 (326)
T ss_pred CHHHhEEe
Confidence 999 8864
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.1e-41 Score=339.32 Aligned_cols=258 Identities=17% Similarity=0.241 Sum_probs=204.4
Q ss_pred ceeeeeeeccCCeEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCC
Q 037429 82 AERIVFTLLREGFYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNN 161 (402)
Q Consensus 82 ~~~p~~~~~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~ 161 (402)
..+|+. +..+.+|+++|+||||||++.|+|||||+++||+|..|..|.|+.++.|||++|+||+.. +
T Consensus 128 ~~v~L~--n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~-----------~ 194 (453)
T PTZ00147 128 DNVELK--DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKD-----------G 194 (453)
T ss_pred Ceeecc--ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEEC-----------C
Confidence 466775 678899999999999999999999999999999999999888888899999999999873 2
Q ss_pred CCCCCCCCCceEEeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCccccc-CCccceeeecCCCCChh--
Q 037429 162 LYKCVDQQCVYSVGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFAS-RGVISGILGLSSSPDSI-- 238 (402)
Q Consensus 162 ~~~C~~~~~~~~~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~-~~~~~GIlGLg~~~~s~-- 238 (402)
|.|++.|++|+. .|.+++|+|++|+. .++ ..|+|+.+..++...+ ....|||||||++.++.
T Consensus 195 --------~~f~i~Yg~Gsv-sG~~~~DtVtiG~~-----~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~ 259 (453)
T PTZ00147 195 --------TKVEMNYVSGTV-SGFFSKDLVTIGNL-----SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGS 259 (453)
T ss_pred --------CEEEEEeCCCCE-EEEEEEEEEEECCE-----EEE-EEEEEEEeccCcccccccccccceecccCCcccccc
Confidence 889999999985 59999999999987 776 5799988765421012 24689999999987653
Q ss_pred ----hhhhhhh--c-cCceEEeeccCCCCCCCCceEEECCCCCCC-CCCeeeeeecCCCCCceeEEEEEEEEECCEEeee
Q 037429 239 ----VMQLSDV--V-DKRFSYCLVPFTDALMAPSIVKFGNDIPPL-SGTVQATTFVPPPGSFYYHLSLIDISVGTRRSRS 310 (402)
Q Consensus 239 ----~~ql~~~--~-~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~-~~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~ 310 (402)
+.+|..| + .++||+||++. ....|.|+|||.|..+ .+++.|+|+.. ..+|.|.++ +.+|+...
T Consensus 260 ~~p~~~~L~~qg~I~~~vFS~~L~~~---~~~~G~L~fGGiD~~ky~G~l~y~pl~~---~~~W~V~l~-~~vg~~~~-- 330 (453)
T PTZ00147 260 VDPYVVELKNQNKIEQAVFTFYLPPE---DKHKGYLTIGGIEERFYEGPLTYEKLNH---DLYWQVDLD-VHFGNVSS-- 330 (453)
T ss_pred CCCHHHHHHHcCCCCccEEEEEecCC---CCCCeEEEECCcChhhcCCceEEEEcCC---CceEEEEEE-EEECCEec--
Confidence 4577766 3 57899999864 2457999999998775 47799999964 359999998 57776432
Q ss_pred cccccccccCCCCeeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCccccEEEEEEcC
Q 037429 311 VTTTLARSRTVTNDLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPGFNNFASFTYHFDG 388 (402)
Q Consensus 311 ~~~~~~~~~~~~~~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~G 388 (402)
...++| ||| +++++|+++++++.+++.+.. .+. . ..|..+|+...+|+|+|+|+|
T Consensus 331 ---------~~~~aI--iDSGTsli~lP~~~~~ai~~~l~~~~----~~~---~-----~~y~~~C~~~~lP~~~f~f~g 387 (453)
T PTZ00147 331 ---------EKANVI--VDSGTSVITVPTEFLNKFVESLDVFK----VPF---L-----PLYVTTCNNTKLPTLEFRSPN 387 (453)
T ss_pred ---------CceeEE--ECCCCchhcCCHHHHHHHHHHhCCee----cCC---C-----CeEEEeCCCCCCCeEEEEECC
Confidence 135689 999 999999999999988774321 110 0 112233433468999999999
Q ss_pred cEEEEccc-ccc
Q 037429 389 ASYDIEGK-FVN 399 (402)
Q Consensus 389 ~~~~l~~~-yi~ 399 (402)
++++|||+ |+.
T Consensus 388 ~~~~L~p~~yi~ 399 (453)
T PTZ00147 388 KVYTLEPEYYLQ 399 (453)
T ss_pred EEEEECHHHhee
Confidence 99999999 875
No 16
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=3.4e-40 Score=330.00 Aligned_cols=258 Identities=17% Similarity=0.272 Sum_probs=202.0
Q ss_pred ceeeeeeeccCCeEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCC
Q 037429 82 AERIVFTLLREGFYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNN 161 (402)
Q Consensus 82 ~~~p~~~~~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~ 161 (402)
..+++. ++.+.+|+++|.||||+|++.|+|||||+++||+|..|..+.|+.++.|||++|+||+.. +
T Consensus 127 ~~~~l~--d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~-----------~ 193 (450)
T PTZ00013 127 DVIELD--DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKD-----------G 193 (450)
T ss_pred Cceeee--ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccC-----------C
Confidence 455664 677899999999999999999999999999999999998766777889999999999873 2
Q ss_pred CCCCCCCCCceEEeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCccccc-CCccceeeecCCCCCh---
Q 037429 162 LYKCVDQQCVYSVGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFAS-RGVISGILGLSSSPDS--- 237 (402)
Q Consensus 162 ~~~C~~~~~~~~~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~-~~~~~GIlGLg~~~~s--- 237 (402)
|.|++.|++|+. .|.+++|+|+||+. .++ ..||++....+....+ ....|||||||++.++
T Consensus 194 --------~~~~i~YG~Gsv-~G~~~~Dtv~iG~~-----~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ 258 (450)
T PTZ00013 194 --------TKVDITYGSGTV-KGFFSKDLVTLGHL-----SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGS 258 (450)
T ss_pred --------cEEEEEECCceE-EEEEEEEEEEECCE-----EEc-cEEEEEEeccccccceecccccceecccCCcccccc
Confidence 899999999984 69999999999986 676 6888887654311122 2468999999998664
Q ss_pred ---hhhhhhhh--c-cCceEEeeccCCCCCCCCceEEECCCCCCC-CCCeeeeeecCCCCCceeEEEEEEEEECCEEeee
Q 037429 238 ---IVMQLSDV--V-DKRFSYCLVPFTDALMAPSIVKFGNDIPPL-SGTVQATTFVPPPGSFYYHLSLIDISVGTRRSRS 310 (402)
Q Consensus 238 ---~~~ql~~~--~-~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~-~~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~ 310 (402)
++.+|++| + .++||+||++. ....|.|+|||+|+.+ .+++.|+|+.. ..+|.|+++ +.+|....
T Consensus 259 ~~p~~~~L~~qg~I~~~vFS~~L~~~---~~~~G~L~fGGiD~~~y~G~L~y~pv~~---~~yW~I~l~-v~~G~~~~-- 329 (450)
T PTZ00013 259 IDPIVVELKNQNKIDNALFTFYLPVH---DVHAGYLTIGGIEEKFYEGNITYEKLNH---DLYWQIDLD-VHFGKQTM-- 329 (450)
T ss_pred CCCHHHHHHhccCcCCcEEEEEecCC---CCCCCEEEECCcCccccccceEEEEcCc---CceEEEEEE-EEECceec--
Confidence 45678776 3 57899999864 2457999999998776 47799999964 359999998 67765432
Q ss_pred cccccccccCCCCeeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCccccEEEEEEcC
Q 037429 311 VTTTLARSRTVTNDLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPGFNNFASFTYHFDG 388 (402)
Q Consensus 311 ~~~~~~~~~~~~~~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~G 388 (402)
.+.++| ||| +++++|+++++++.+++.... .+ .. ..|..+|+...+|+|+|+|+|
T Consensus 330 ---------~~~~aI--lDSGTSli~lP~~~~~~i~~~l~~~~----~~-----~~---~~y~~~C~~~~lP~i~F~~~g 386 (450)
T PTZ00013 330 ---------QKANVI--VDSGTTTITAPSEFLNKFFANLNVIK----VP-----FL---PFYVTTCDNKEMPTLEFKSAN 386 (450)
T ss_pred ---------cccceE--ECCCCccccCCHHHHHHHHHHhCCee----cC-----CC---CeEEeecCCCCCCeEEEEECC
Confidence 134689 999 999999999998887764321 10 01 123334443568999999999
Q ss_pred cEEEEccc-ccc
Q 037429 389 ASYDIEGK-FVN 399 (402)
Q Consensus 389 ~~~~l~~~-yi~ 399 (402)
++++|+|+ |+.
T Consensus 387 ~~~~L~p~~Yi~ 398 (450)
T PTZ00013 387 NTYTLEPEYYMN 398 (450)
T ss_pred EEEEECHHHhee
Confidence 99999999 875
No 17
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=3e-40 Score=314.30 Aligned_cols=237 Identities=19% Similarity=0.269 Sum_probs=192.6
Q ss_pred EEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCCCCceEEe
Q 037429 96 YIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQCVYSVG 175 (402)
Q Consensus 96 Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~~~~~~~ 175 (402)
|+++|+||||||++.|+|||||+++||+|..|..|.++.++.|||++|+|++..+ + |.|.+.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~----------~--------~~~~i~ 62 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP----------G--------ATWSIS 62 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC----------C--------cEEEEE
Confidence 8999999999999999999999999999999999998888899999999998642 2 899999
Q ss_pred eCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCccccc-CCccceeeecCCCCChh---------hhhhhhh
Q 037429 176 YGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFAS-RGVISGILGLSSSPDSI---------VMQLSDV 245 (402)
Q Consensus 176 Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~-~~~~~GIlGLg~~~~s~---------~~ql~~~ 245 (402)
|++|+.+.|.+++|+|+|++. .++++.|||++...+. .+ ....+||||||+...+. ..+|.++
T Consensus 63 Y~~G~~~~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~--~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~ 135 (278)
T cd06097 63 YGDGSSASGIVYTDTVSIGGV-----EVPNQAIELATAVSAS--FFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSS 135 (278)
T ss_pred eCCCCeEEEEEEEEEEEECCE-----EECCeEEEEEeecCcc--ccccccccceeeeccccccccccCCCCCHHHHHHHh
Confidence 999987779999999999987 8999999999987651 12 35789999999986643 3445544
Q ss_pred -ccCceEEeeccCCCCCCCCceEEECCCCCCC-CCCeeeeeecCCCCCceeEEEEEEEEECCEEeeecccccccccCCCC
Q 037429 246 -VDKRFSYCLVPFTDALMAPSIVKFGNDIPPL-SGTVQATTFVPPPGSFYYHLSLIDISVGTRRSRSVTTTLARSRTVTN 323 (402)
Q Consensus 246 -~~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~-~~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~ 323 (402)
..+.||+||.+ ...|.|+|||+|+.+ .+++.|+|+... ..+|.|++++|+||++.... .....
T Consensus 136 ~~~~~Fs~~l~~-----~~~G~l~fGg~D~~~~~g~l~~~pi~~~--~~~w~v~l~~i~v~~~~~~~--------~~~~~ 200 (278)
T cd06097 136 LDAPLFTADLRK-----AAPGFYTFGYIDESKYKGEISWTPVDNS--SGFWQFTSTSYTVGGDAPWS--------RSGFS 200 (278)
T ss_pred ccCceEEEEecC-----CCCcEEEEeccChHHcCCceEEEEccCC--CcEEEEEEeeEEECCcceee--------cCCce
Confidence 35899999986 347999999998765 577999999864 35999999999999874322 12456
Q ss_pred eeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCccccEEEEEE
Q 037429 324 DLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPGFNNFASFTYHF 386 (402)
Q Consensus 324 ~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f 386 (402)
+| ||| +++++|+++++++.+++.... + +. ...+|..+|+ ..+|+|+|+|
T Consensus 201 ~i--iDSGTs~~~lP~~~~~~l~~~l~g~~----~----~~---~~~~~~~~C~-~~~P~i~f~~ 251 (278)
T cd06097 201 AI--ADTGTTLILLPDAIVEAYYSQVPGAY----Y----DS---EYGGWVFPCD-TTLPDLSFAV 251 (278)
T ss_pred EE--eecCCchhcCCHHHHHHHHHhCcCCc----c----cC---CCCEEEEECC-CCCCCEEEEE
Confidence 88 999 999999999999888773211 1 01 1247788887 3499999999
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2.3e-39 Score=319.68 Aligned_cols=265 Identities=18% Similarity=0.231 Sum_probs=196.7
Q ss_pred eEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCCCCceE
Q 037429 94 FYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQCVYS 173 (402)
Q Consensus 94 ~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~~~~~ 173 (402)
..|+++|.||||+|+|.|+|||||+++||+|..|. +.++.|||++|+||+... |.|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~----~~~~~f~~~~SsT~~~~~-------------------~~~~ 58 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP----FIHTYFHRELSSTYRDLG-------------------KGVT 58 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc----cccccCCchhCcCcccCC-------------------ceEE
Confidence 47999999999999999999999999999998773 346689999999998843 8999
Q ss_pred EeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCccccc--CCccceeeecCCCCCh--------hhhhhh
Q 037429 174 VGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFAS--RGVISGILGLSSSPDS--------IVMQLS 243 (402)
Q Consensus 174 ~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~--~~~~~GIlGLg~~~~s--------~~~ql~ 243 (402)
+.|++|+. .|.+++|+|+|++.... .+ .+.|+++....+ .+ ....|||||||++.++ +..+|.
T Consensus 59 i~Yg~Gs~-~G~~~~D~v~ig~~~~~--~~-~~~~~~~~~~~~---~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~ 131 (364)
T cd05473 59 VPYTQGSW-EGELGTDLVSIPKGPNV--TF-RANIAAITESEN---FFLNGSNWEGILGLAYAELARPDSSVEPFFDSLV 131 (364)
T ss_pred EEECcceE-EEEEEEEEEEECCCCcc--ce-EEeeEEEecccc---ceecccccceeeeecccccccCCCCCCCHHHHHH
Confidence 99999987 59999999999864111 12 234667665554 33 2357999999998663 334666
Q ss_pred hh--ccCceEEeeccC--C----CCCCCCceEEECCCCCCC-CCCeeeeeecCCCCCceeEEEEEEEEECCEEeeecccc
Q 037429 244 DV--VDKRFSYCLVPF--T----DALMAPSIVKFGNDIPPL-SGTVQATTFVPPPGSFYYHLSLIDISVGTRRSRSVTTT 314 (402)
Q Consensus 244 ~~--~~~~FS~~l~~~--~----~~~~~~G~l~fG~~~~~~-~~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~ 314 (402)
+| +.++||+||... . ......|.|+||+.|+.+ .+++.|+|+... .+|.|+|++|+||++.+..+...
T Consensus 132 ~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~---~~~~v~l~~i~vg~~~~~~~~~~ 208 (364)
T cd05473 132 KQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE---WYYEVIILKLEVGGQSLNLDCKE 208 (364)
T ss_pred hccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc---eeEEEEEEEEEECCEeccccccc
Confidence 55 457999987431 0 012357999999988765 467999999763 59999999999999988754332
Q ss_pred cccccCCCCeeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCC--CCCCccccCCCC-CccccEEEEEEcC-
Q 037429 315 LARSRTVTNDLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVP--EGLQLCYTNPPG-FNNFASFTYHFDG- 388 (402)
Q Consensus 315 ~~~~~~~~~~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~--~~~~~C~~~~~~-~~~~P~i~f~f~G- 388 (402)
+ ...++| ||| ++++||+++|++|.+++.++... +...+.. .....|+..... ...+|+|+|+|+|
T Consensus 209 ~----~~~~~i--vDSGTs~~~lp~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~ 279 (364)
T cd05473 209 Y----NYDKAI--VDSGTTNLRLPVKVFNAAVDAIKAASLI---EDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDE 279 (364)
T ss_pred c----cCccEE--EeCCCcceeCCHHHHHHHHHHHHhhccc---ccCCccccCcceeecccccCchHhhCCcEEEEEccC
Confidence 2 124689 999 99999999999999999887541 1111110 112368765332 1369999999985
Q ss_pred -----cEEEEccc-cccc
Q 037429 389 -----ASYDIEGK-FVNL 400 (402)
Q Consensus 389 -----~~~~l~~~-yi~~ 400 (402)
.+++|||+ |+..
T Consensus 280 ~~~~~~~l~l~p~~Y~~~ 297 (364)
T cd05473 280 NSSQSFRITILPQLYLRP 297 (364)
T ss_pred CCCceEEEEECHHHhhhh
Confidence 37899999 8763
No 19
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.6e-39 Score=308.45 Aligned_cols=212 Identities=28% Similarity=0.493 Sum_probs=174.3
Q ss_pred eEEEEEEEeCCCCcEEEEEEECCCCceEEeCC-CCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCCCCce
Q 037429 94 FYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQ-PCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQCVY 172 (402)
Q Consensus 94 ~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~-~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~~~~ 172 (402)
++|+++|+||||||++.|++||||+++||+|. +|..| . |.|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-----------------~---------------------c~~ 42 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-----------------Q---------------------CDY 42 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-----------------c---------------------Ccc
Confidence 57999999999999999999999999999994 67666 1 899
Q ss_pred EEeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCcccccCCccceeeecCCCCChhhhhhhhh--ccCce
Q 037429 173 SVGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFASRGVISGILGLSSSPDSIVMQLSDV--VDKRF 250 (402)
Q Consensus 173 ~~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~--~~~~F 250 (402)
++.|+||+.+.|.+++|+|+|+..++. ..++++.|||+..+.+.........+||||||+++.++++||..+ ++++|
T Consensus 43 ~i~Ygd~~~~~G~~~~D~v~~~~~~~~-~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~F 121 (273)
T cd05475 43 EIEYADGGSSMGVLVTDIFSLKLTNGS-RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVI 121 (273)
T ss_pred EeEeCCCCceEEEEEEEEEEEeecCCC-cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceE
Confidence 999999888889999999999764332 257899999998766510001246899999999999999999876 67899
Q ss_pred EEeeccCCCCCCCCceEEECCCCCCCCCCeeeeeecCCCCCceeEEEEEEEEECCEEeeecccccccccCCCCeeeeecC
Q 037429 251 SYCLVPFTDALMAPSIVKFGNDIPPLSGTVQATTFVPPPGSFYYHLSLIDISVGTRRSRSVTTTLARSRTVTNDLPGYDS 330 (402)
Q Consensus 251 S~~l~~~~~~~~~~G~l~fG~~~~~~~~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~i~~iDS 330 (402)
|+||++ ...|.|+||+. ..+.+++.|+|+..++...+|.|++++|+||++... ....++| |||
T Consensus 122 s~~l~~-----~~~g~l~~G~~-~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~---------~~~~~~i--vDT 184 (273)
T cd05475 122 GHCLSS-----NGGGFLFFGDD-LVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG---------GKGLEVV--FDS 184 (273)
T ss_pred EEEccC-----CCCeEEEECCC-CCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc---------CCCceEE--EEC
Confidence 999986 34799999953 334567999999876444699999999999998532 1245799 999
Q ss_pred --CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCccccEEEEEEcC----cEEEEccc-ccc
Q 037429 331 --DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPGFNNFASFTYHFDG----ASYDIEGK-FVN 399 (402)
Q Consensus 331 --t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~G----~~~~l~~~-yi~ 399 (402)
++++||+++| +|+|+|+|+| ++++||++ |+.
T Consensus 185 GTt~t~lp~~~y--------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~ 222 (273)
T cd05475 185 GSSYTYFNAQAY--------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLI 222 (273)
T ss_pred CCceEEcCCccc--------------------------------------cccEEEEECCCCceeEEEeCCCceEE
Confidence 9999999876 3899999986 79999999 875
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.9e-37 Score=292.60 Aligned_cols=240 Identities=28% Similarity=0.448 Sum_probs=196.5
Q ss_pred EEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCC--cCCCCCCccccCCCCCcCCCCCCCCCCCCCCCCceE
Q 037429 96 YIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPI--YNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQCVYS 173 (402)
Q Consensus 96 Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~--f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~~~~~ 173 (402)
|+++|.||||+|++.|++||||+++||+|..|..|.++.... |++..|+++.. .. |.|.
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~-----------~~--------~~~~ 61 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKD-----------TG--------CTFS 61 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeec-----------CC--------CEEE
Confidence 789999999999999999999999999999999987776665 77777776654 22 9999
Q ss_pred EeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCccccc-CCccceeeecCCCC------Chhhhhhhhh-
Q 037429 174 VGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFAS-RGVISGILGLSSSP------DSIVMQLSDV- 245 (402)
Q Consensus 174 ~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~-~~~~~GIlGLg~~~------~s~~~ql~~~- 245 (402)
+.|++|+.. |.+++|+|+|++. .++++.|||++...+ .+ ....+||||||+.. .+++.||.++
T Consensus 62 ~~Y~~g~~~-g~~~~D~v~~~~~-----~~~~~~fg~~~~~~~---~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~ 132 (283)
T cd05471 62 ITYGDGSVT-GGLGTDTVTIGGL-----TIPNQTFGCATSESG---DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQG 132 (283)
T ss_pred EEECCCeEE-EEEEEeEEEECCE-----EEeceEEEEEeccCC---cccccccceEeecCCcccccccCCCHHHHHHHCC
Confidence 999998765 9999999999987 789999999998765 22 35789999999998 7899999987
Q ss_pred --ccCceEEeeccCCCCCCCCceEEECCCCCCC-CCCeeeeeecCCCCCceeEEEEEEEEECCEEeeecccccccccCCC
Q 037429 246 --VDKRFSYCLVPFTDALMAPSIVKFGNDIPPL-SGTVQATTFVPPPGSFYYHLSLIDISVGTRRSRSVTTTLARSRTVT 322 (402)
Q Consensus 246 --~~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~-~~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~ 322 (402)
..++||+||.+.. .....|.|+||+.+..+ .+++.|+|++.. ...+|.|.|++|+|+++.... .....
T Consensus 133 ~i~~~~Fs~~l~~~~-~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~~-------~~~~~ 203 (283)
T cd05471 133 LISSPVFSFYLGRDG-DGGNGGELTFGGIDPSKYTGDLTYTPVVSN-GPGYWQVPLDGISVGGKSVIS-------SSGGG 203 (283)
T ss_pred CCCCCEEEEEEcCCC-CCCCCCEEEEcccCccccCCceEEEecCCC-CCCEEEEEeCeEEECCceeee-------cCCCc
Confidence 3689999999842 23578999999998775 477999999986 245999999999999875111 12345
Q ss_pred CeeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCC-CccccEEEEEE
Q 037429 323 NDLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPG-FNNFASFTYHF 386 (402)
Q Consensus 323 ~~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~P~i~f~f 386 (402)
.+| ||| ++++||+++|++|.+++.+.... ...|+...|. ...+|+|+|+|
T Consensus 204 ~~i--iDsGt~~~~lp~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~p~i~f~f 256 (283)
T cd05471 204 GAI--VDSGTSLIYLPSSVYDAILKALGAAVSS------------SDGGYGVDCSPCDTLPDITFTF 256 (283)
T ss_pred EEE--EecCCCCEeCCHHHHHHHHHHhCCcccc------------cCCcEEEeCcccCcCCCEEEEE
Confidence 788 999 99999999999999998776541 2235555554 36799999999
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.9e-37 Score=291.69 Aligned_cols=211 Identities=38% Similarity=0.645 Sum_probs=177.1
Q ss_pred EEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCCCCceEE
Q 037429 95 YYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQCVYSV 174 (402)
Q Consensus 95 ~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~~~~~~ 174 (402)
+|+++|+||||||++.|+|||||+++||+| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------------------------~~~~~ 35 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------------------------CSYEY 35 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------------------------CceEe
Confidence 599999999999999999999999999986 24788
Q ss_pred eeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCcccccCCccceeeecCCCCChhhhhhhhhccCceEEee
Q 037429 175 GYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFASRGVISGILGLSSSPDSIVMQLSDVVDKRFSYCL 254 (402)
Q Consensus 175 ~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~~FS~~l 254 (402)
.|+||+...|.+++|+|+|++.. ..++++.|||++...+ ......+||||||+...|+++||..+- ++||+||
T Consensus 36 ~Y~dg~~~~G~~~~D~v~~g~~~---~~~~~~~Fg~~~~~~~---~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l 108 (265)
T cd05476 36 SYGDGSSTSGVLATETFTFGDSS---VSVPNVAFGCGTDNEG---GSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCL 108 (265)
T ss_pred EeCCCceeeeeEEEEEEEecCCC---CccCCEEEEecccccC---CccCCCCEEEECCCCcccHHHHhhccc-CeeEEEc
Confidence 99999888999999999999752 2478999999998765 223578999999999999999998544 7999999
Q ss_pred ccCCCCCCCCceEEECCCCCCCCCCeeeeeecCCCC-CceeEEEEEEEEECCEEeeecccccc-cccCCCCeeeeecC--
Q 037429 255 VPFTDALMAPSIVKFGNDIPPLSGTVQATTFVPPPG-SFYYHLSLIDISVGTRRSRSVTTTLA-RSRTVTNDLPGYDS-- 330 (402)
Q Consensus 255 ~~~~~~~~~~G~l~fG~~~~~~~~~~~~tp~~~~~~-~~~y~v~l~~i~vg~~~~~~~~~~~~-~~~~~~~~i~~iDS-- 330 (402)
.+.. .....|+|+||+.|..+.+++.|+|++.++. ..+|.|+|++|+|+++.+.++...+. ......++| |||
T Consensus 109 ~~~~-~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai--~DTGT 185 (265)
T cd05476 109 VPHD-DTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTI--IDSGT 185 (265)
T ss_pred cCCC-CCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEE--EeCCC
Confidence 8742 1356899999999877667899999998642 56999999999999998876544332 223456799 999
Q ss_pred CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCccccEEEEEEc-CcEEEEccc-ccc
Q 037429 331 DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPGFNNFASFTYHFD-GASYDIEGK-FVN 399 (402)
Q Consensus 331 t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~-G~~~~l~~~-yi~ 399 (402)
++++||+++| |+|+|+|+ |+++.|+++ |+.
T Consensus 186 s~~~lp~~~~---------------------------------------P~i~~~f~~~~~~~i~~~~y~~ 217 (265)
T cd05476 186 TLTYLPDPAY---------------------------------------PDLTLHFDGGADLELPPENYFV 217 (265)
T ss_pred cceEcCcccc---------------------------------------CCEEEEECCCCEEEeCcccEEE
Confidence 9999998887 78999999 899999999 875
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=7.3e-36 Score=286.31 Aligned_cols=223 Identities=23% Similarity=0.384 Sum_probs=181.9
Q ss_pred EEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCCCCceEE
Q 037429 95 YYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQCVYSV 174 (402)
Q Consensus 95 ~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~~~~~~ 174 (402)
.|+++|.||||+|++.|+|||||+++||+ .|++
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------------------------~~~~ 34 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------------------------DFSI 34 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------------------------eeEE
Confidence 69999999999999999999999999998 1588
Q ss_pred eeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCcccccCCccceeeecCCCCC-----------hhhhhhh
Q 037429 175 GYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFASRGVISGILGLSSSPD-----------SIVMQLS 243 (402)
Q Consensus 175 ~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~ql~ 243 (402)
.|++|+.+.|.+++|+|+|++. .++++.|||++... ..+||||||+++. +++.||.
T Consensus 35 ~Y~~g~~~~G~~~~D~v~~g~~-----~~~~~~fg~~~~~~--------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~ 101 (295)
T cd05474 35 SYGDGTSASGTWGTDTVSIGGA-----TVKNLQFAVANSTS--------SDVGVLGIGLPGNEATYGTGYTYPNFPIALK 101 (295)
T ss_pred EeccCCcEEEEEEEEEEEECCe-----EecceEEEEEecCC--------CCcceeeECCCCCcccccCCCcCCCHHHHHH
Confidence 9999888889999999999987 88999999999843 3789999999876 6888998
Q ss_pred hh--c-cCceEEeeccCCCCCCCCceEEECCCCCCC-CCCeeeeeecCCCC---CceeEEEEEEEEECCEEeeecccccc
Q 037429 244 DV--V-DKRFSYCLVPFTDALMAPSIVKFGNDIPPL-SGTVQATTFVPPPG---SFYYHLSLIDISVGTRRSRSVTTTLA 316 (402)
Q Consensus 244 ~~--~-~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~-~~~~~~tp~~~~~~---~~~y~v~l~~i~vg~~~~~~~~~~~~ 316 (402)
++ + +++||+||.+.. ...|.|+||++|..+ .+.+.|+|+..... ..+|.|++++|+|+++.+..+.
T Consensus 102 ~~g~i~~~~Fsl~l~~~~---~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~---- 174 (295)
T cd05474 102 KQGLIKKNAYSLYLNDLD---ASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTL---- 174 (295)
T ss_pred HCCcccceEEEEEeCCCC---CCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccc----
Confidence 77 3 578999998742 457999999988665 46799999998642 3699999999999998865321
Q ss_pred cccCCCCeeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCC-CccccEEEEEEcCcEEEE
Q 037429 317 RSRTVTNDLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPG-FNNFASFTYHFDGASYDI 393 (402)
Q Consensus 317 ~~~~~~~~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~P~i~f~f~G~~~~l 393 (402)
......+| ||| ++++||+++|++|.+++.+.... . ..+|..+|. ... |+|+|+|+|++++|
T Consensus 175 -~~~~~~~i--iDSGt~~~~lP~~~~~~l~~~~~~~~~~-------~-----~~~~~~~C~~~~~-p~i~f~f~g~~~~i 238 (295)
T cd05474 175 -LSKNLPAL--LDSGTTLTYLPSDIVDAIAKQLGATYDS-------D-----EGLYVVDCDAKDD-GSLTFNFGGATISV 238 (295)
T ss_pred -cCCCccEE--ECCCCccEeCCHHHHHHHHHHhCCEEcC-------C-----CcEEEEeCCCCCC-CEEEEEECCeEEEE
Confidence 12356799 999 99999999999999988655431 1 123344443 134 99999999999999
Q ss_pred ccc-cccc
Q 037429 394 EGK-FVNL 400 (402)
Q Consensus 394 ~~~-yi~~ 400 (402)
|++ |+..
T Consensus 239 ~~~~~~~~ 246 (295)
T cd05474 239 PLSDLVLP 246 (295)
T ss_pred EHHHhEec
Confidence 999 7654
No 23
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=3.9e-36 Score=290.61 Aligned_cols=249 Identities=24% Similarity=0.409 Sum_probs=203.5
Q ss_pred EEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCc-ccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCCCCceE
Q 037429 95 YYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNC-YRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQCVYS 173 (402)
Q Consensus 95 ~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C-~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~~~~~ 173 (402)
+|+++|.||||+|++.|++||||+++||++..|..| .+.....|++.+|+|++... +.+.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~-------------------~~~~ 61 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG-------------------KPFS 61 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE-------------------EEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce-------------------eeee
Confidence 699999999999999999999999999999999887 67778899999999998732 7899
Q ss_pred EeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCccccc-CCccceeeecCCCC-------Chhhhhhhhh
Q 037429 174 VGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFAS-RGVISGILGLSSSP-------DSIVMQLSDV 245 (402)
Q Consensus 174 ~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~-~~~~~GIlGLg~~~-------~s~~~ql~~~ 245 (402)
+.|++|+ +.|.+++|+|+|++. .++++.||++....+. .+ ....+||||||+.. .+++.+|.++
T Consensus 62 ~~y~~g~-~~G~~~~D~v~ig~~-----~~~~~~f~~~~~~~~~--~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~ 133 (317)
T PF00026_consen 62 ISYGDGS-VSGNLVSDTVSIGGL-----TIPNQTFGLADSYSGD--PFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQ 133 (317)
T ss_dssp EEETTEE-EEEEEEEEEEEETTE-----EEEEEEEEEEEEEESH--HHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHT
T ss_pred eeccCcc-cccccccceEeeeec-----cccccceecccccccc--ccccccccccccccCCcccccccCCcceecchhh
Confidence 9999999 669999999999987 8889999999986541 12 36789999999753 4567788877
Q ss_pred --c-cCceEEeeccCCCCCCCCceEEECCCCCCC-CCCeeeeeecCCCCCceeEEEEEEEEECCEEeeecccccccccCC
Q 037429 246 --V-DKRFSYCLVPFTDALMAPSIVKFGNDIPPL-SGTVQATTFVPPPGSFYYHLSLIDISVGTRRSRSVTTTLARSRTV 321 (402)
Q Consensus 246 --~-~~~FS~~l~~~~~~~~~~G~l~fG~~~~~~-~~~~~~tp~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~~ 321 (402)
+ .++||++|.+.. ...|.|+||+.|+.+ .+++.|.|+.. ..+|.|.+++|+++++...... .
T Consensus 134 g~i~~~~fsl~l~~~~---~~~g~l~~Gg~d~~~~~g~~~~~~~~~---~~~w~v~~~~i~i~~~~~~~~~--------~ 199 (317)
T PF00026_consen 134 GLISSNVFSLYLNPSD---SQNGSLTFGGYDPSKYDGDLVWVPLVS---SGYWSVPLDSISIGGESVFSSS--------G 199 (317)
T ss_dssp TSSSSSEEEEEEESTT---SSEEEEEESSEEGGGEESEEEEEEBSS---TTTTEEEEEEEEETTEEEEEEE--------E
T ss_pred ccccccccceeeeecc---cccchheeeccccccccCceeccCccc---cccccccccccccccccccccc--------c
Confidence 3 688999999852 567999999988775 46799999984 4589999999999998322211 2
Q ss_pred CCeeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCC-CccccEEEEEEcCcEEEEccc-c
Q 037429 322 TNDLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCYTNPPG-FNNFASFTYHFDGASYDIEGK-F 397 (402)
Q Consensus 322 ~~~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~P~i~f~f~G~~~~l~~~-y 397 (402)
..++ ||| ++++||.+++++|.+++..... . .+|..+|+ ...+|.|+|+|+|.+++||++ |
T Consensus 200 ~~~~--~Dtgt~~i~lp~~~~~~i~~~l~~~~~---~-----------~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~ 263 (317)
T PF00026_consen 200 QQAI--LDTGTSYIYLPRSIFDAIIKALGGSYS---D-----------GVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDY 263 (317)
T ss_dssp EEEE--EETTBSSEEEEHHHHHHHHHHHTTEEE---C-----------SEEEEETTGGGGSEEEEEEETTEEEEEEHHHH
T ss_pred eeee--cccccccccccchhhHHHHhhhccccc---c-----------eeEEEecccccccceEEEeeCCEEEEecchHh
Confidence 2478 999 9999999999999988865543 1 35666665 256899999999999999999 8
Q ss_pred ccc
Q 037429 398 VNL 400 (402)
Q Consensus 398 i~~ 400 (402)
+..
T Consensus 264 ~~~ 266 (317)
T PF00026_consen 264 IFK 266 (317)
T ss_dssp EEE
T ss_pred ccc
Confidence 754
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=1.1e-34 Score=254.15 Aligned_cols=161 Identities=35% Similarity=0.724 Sum_probs=131.4
Q ss_pred EEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCC-CCCCC-CC-Cce
Q 037429 96 YIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNL-YKCVD-QQ-CVY 172 (402)
Q Consensus 96 Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~-~~C~~-~~-~~~ 172 (402)
|+++|+||||+|++.|+|||||+++|++| ..+.|+|++|+||+.++|.++.|....+. ..|.. ++ |.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccc
Confidence 89999999999999999999999999998 46789999999999999999999877652 22332 33 999
Q ss_pred EEeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCcccccCCccceeeecCCCCChhhhhhhhhccCceEE
Q 037429 173 SVGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFASRGVISGILGLSSSPDSIVMQLSDVVDKRFSY 252 (402)
Q Consensus 173 ~~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~~FS~ 252 (402)
.+.|++|+.+.|.+++|+|+++...++...+.++.|||++...+ .+ ...+||||||++++|+++||+.+..++|||
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g---~~-~~~~GilGLg~~~~Sl~sQl~~~~~~~FSy 147 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSG---LF-YGADGILGLGRGPLSLPSQLASSSGNKFSY 147 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGT---SS-TTEEEEEE-SSSTTSHHHHHHHH--SEEEE
T ss_pred eeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeecccc---CC-cCCCcccccCCCcccHHHHHHHhcCCeEEE
Confidence 99999999999999999999998765556788999999999887 55 489999999999999999997777899999
Q ss_pred eeccCCCCCCCCceEEECC
Q 037429 253 CLVPFTDALMAPSIVKFGN 271 (402)
Q Consensus 253 ~l~~~~~~~~~~G~l~fG~ 271 (402)
||++ ++....|.|+||+
T Consensus 148 CL~~--~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 148 CLPS--SSPSSSGFLSFGD 164 (164)
T ss_dssp EB-S---SSSSEEEEEECS
T ss_pred ECCC--CCCCCCEEEEeCc
Confidence 9999 2357789999995
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.93 E-value=3.1e-25 Score=181.00 Aligned_cols=106 Identities=33% Similarity=0.659 Sum_probs=94.2
Q ss_pred EEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCc-CCCCCCccccCCCCCcCCCCCCCCCCCCCCCCceEEee
Q 037429 98 VQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIY-NSVASSTYRKLPCDHPLCQGDNNLYKCVDQQCVYSVGY 176 (402)
Q Consensus 98 ~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f-~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~~~~~~~Y 176 (402)
++|.||||||++.|+|||||+++||+|..|..|.++.++.| +|++|++++.. . |.|.+.|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~-----------~--------~~~~~~Y 61 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDN-----------G--------CTFSITY 61 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCC-----------C--------cEEEEEe
Confidence 47999999999999999999999999999999888877777 99999998873 2 8999999
Q ss_pred CCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCccccc--CCccceeeec
Q 037429 177 GGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFAS--RGVISGILGL 231 (402)
Q Consensus 177 ~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~--~~~~~GIlGL 231 (402)
++|+.. |.+++|+|+|++. .++++.|||++...+ .+ ....+|||||
T Consensus 62 ~~g~~~-g~~~~D~v~ig~~-----~~~~~~fg~~~~~~~---~~~~~~~~~GilGL 109 (109)
T cd05470 62 GTGSLS-GGLSTDTVSIGDI-----EVVGQAFGCATDEPG---ATFLPALFDGILGL 109 (109)
T ss_pred CCCeEE-EEEEEEEEEECCE-----EECCEEEEEEEecCC---ccccccccccccCC
Confidence 999865 9999999999887 789999999999877 32 3568999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.61 E-value=2.2e-15 Score=131.60 Aligned_cols=106 Identities=25% Similarity=0.405 Sum_probs=78.4
Q ss_pred eeEEEEEEEEECCEEeeecccccccccCCCCeeeeecC--CcccchHHHHHHHHHHHHHHhhhccccccCCCCCCCCccc
Q 037429 293 YYHLSLIDISVGTRRSRSVTTTLARSRTVTNDLPGYDS--DQTTVGRNAYRAVMGAFQNYYDALKLERIGRVPEGLQLCY 370 (402)
Q Consensus 293 ~y~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~i~~iDS--t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~ 370 (402)
+|+|+|++|+||++++.++...|+..++.+++| ||| ++|+||+++|++|+++|.+++...+..+......+++.||
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~i--iDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy 78 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTI--IDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCY 78 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEE--E-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EE
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEE--EECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCcee
Confidence 599999999999999999888774345678899 999 9999999999999999999998644344334456688999
Q ss_pred cCCC-----CCccccEEEEEEc-CcEEEEccc-cccc
Q 037429 371 TNPP-----GFNNFASFTYHFD-GASYDIEGK-FVNL 400 (402)
Q Consensus 371 ~~~~-----~~~~~P~i~f~f~-G~~~~l~~~-yi~~ 400 (402)
+.+. ....+|+|+|||. |++++|+++ |+..
T Consensus 79 ~~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~ 115 (161)
T PF14541_consen 79 NLSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQ 115 (161)
T ss_dssp EGGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEE
T ss_pred eccccccccccccCCeEEEEEeCCcceeeeccceeee
Confidence 9987 2468999999999 799999999 7654
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.08 E-value=1.3e-05 Score=62.80 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=66.9
Q ss_pred eEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCCCCceE
Q 037429 94 FYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQCVYS 173 (402)
Q Consensus 94 ~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~~~~~ 173 (402)
+.|++++.|+ .+++.+++|||++.+|+.......+.. + .. .. ....
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~-------~-----~~------------~~--------~~~~ 46 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGL-------P-----LT------------LG--------GKVT 46 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCC-------C-----cc------------CC--------CcEE
Confidence 3589999999 599999999999999997542211110 0 00 00 4557
Q ss_pred EeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCcccccCCccceeeecCC
Q 037429 174 VGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFASRGVISGILGLSS 233 (402)
Q Consensus 174 ~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~ 233 (402)
+..++|.........+.+++|+. .++++.+........ ..+||||+.+
T Consensus 47 ~~~~~G~~~~~~~~~~~i~ig~~-----~~~~~~~~v~d~~~~-------~~~gIlG~d~ 94 (96)
T cd05483 47 VQTANGRVRAARVRLDSLQIGGI-----TLRNVPAVVLPGDAL-------GVDGLLGMDF 94 (96)
T ss_pred EEecCCCccceEEEcceEEECCc-----EEeccEEEEeCCccc-------CCceEeChHH
Confidence 77888887767777899999987 778888776654331 4799999853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.52 E-value=0.017 Score=47.74 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=63.2
Q ss_pred cCCeEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCCCC
Q 037429 91 REGFYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQC 170 (402)
Q Consensus 91 ~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~~ 170 (402)
..++.|++++.|. .+++.+++|||++.+-+...--.... .++..- . -
T Consensus 7 ~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~Lg------l~~~~~-----------------~--------~ 53 (121)
T TIGR02281 7 DGDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRLG------LDLNRL-----------------G--------Y 53 (121)
T ss_pred cCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC------CCcccC-----------------C--------c
Confidence 4679999999997 47999999999999877543111000 111100 0 1
Q ss_pred ceEEeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCcccccCCccceeeecCC
Q 037429 171 VYSVGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFASRGVISGILGLSS 233 (402)
Q Consensus 171 ~~~~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg~ 233 (402)
...+.=+.|......+.-|.+.+|+. .+.|+.+.+..... ..+|+||+.+
T Consensus 54 ~~~~~ta~G~~~~~~~~l~~l~iG~~-----~~~nv~~~v~~~~~--------~~~~LLGm~f 103 (121)
T TIGR02281 54 TVTVSTANGQIKAARVTLDRVAIGGI-----VVNDVDAMVAEGGA--------LSESLLGMSF 103 (121)
T ss_pred eEEEEeCCCcEEEEEEEeCEEEECCE-----EEeCcEEEEeCCCc--------CCceEcCHHH
Confidence 23344455666556678899999998 88888877764322 1479999853
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.93 E-value=0.065 Score=40.97 Aligned_cols=89 Identities=25% Similarity=0.256 Sum_probs=54.5
Q ss_pred EEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCCCCceEEeeC
Q 037429 98 VQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQCVYSVGYG 177 (402)
Q Consensus 98 ~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~~~~~~~Y~ 177 (402)
+++.|+ .+++.+++|||++.+.+.-.-+.... ..+... .....+.-.
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l~------~~~~~~-------------------------~~~~~~~~~ 47 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKLG------LKPRPK-------------------------SVPISVSGA 47 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHcC------CCCcCC-------------------------ceeEEEEeC
Confidence 356776 48999999999998777543221110 001000 022344445
Q ss_pred CCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeCCCCcccccCCccceeeecC
Q 037429 178 GGGTTKGVASFESFRFATDSSSATTVDNIIFGCSNDNQNIQFASRGVISGILGLS 232 (402)
Q Consensus 178 dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~GIlGLg 232 (402)
+|........-+.+++++. .+.++.|-.... . ...+||||+-
T Consensus 48 ~g~~~~~~~~~~~i~ig~~-----~~~~~~~~v~~~--~------~~~~~iLG~d 89 (90)
T PF13650_consen 48 GGSVTVYRGRVDSITIGGI-----TLKNVPFLVVDL--G------DPIDGILGMD 89 (90)
T ss_pred CCCEEEEEEEEEEEEECCE-----EEEeEEEEEECC--C------CCCEEEeCCc
Confidence 5655556677778999886 777777766651 2 3578999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.84 E-value=0.52 Score=38.96 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=27.3
Q ss_pred CCeEEEEEEEeCCCCcEEEEEEECCCCceEEeCC
Q 037429 92 EGFYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQ 125 (402)
Q Consensus 92 ~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~ 125 (402)
....+++++.|+ ++++.+++|||++..++.-.
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 456789999998 48899999999999988654
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=89.82 E-value=0.4 Score=37.12 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=24.4
Q ss_pred EEEEEEeCCCCcEEEEEEECCCCceEEeCC
Q 037429 96 YIVQVGIGSPPLNVFLLMDTGGGLIWTQCQ 125 (402)
Q Consensus 96 Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~ 125 (402)
|++++.|+- +++.+++||||+..++.-+
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHH
Confidence 578899984 8999999999999999754
No 32
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=82.39 E-value=2.6 Score=31.07 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=29.5
Q ss_pred cCCeEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCC
Q 037429 91 REGFYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPC 127 (402)
Q Consensus 91 ~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C 127 (402)
...+.+++.+.||. +.+.+++|||++...+...-+
T Consensus 4 ~~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 4 PDPGLMYVPVSIGG--VQVKALVDTGATHNFISESLA 38 (72)
T ss_pred ccCCEEEEEEEECC--EEEEEEEeCCCcceecCHHHH
Confidence 45688999999996 999999999999988875533
No 33
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=81.80 E-value=11 Score=28.57 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=20.0
Q ss_pred EEeCCCCcEEEEEEECCCCceEEeCCC
Q 037429 100 VGIGSPPLNVFLLMDTGGGLIWTQCQP 126 (402)
Q Consensus 100 i~vGtP~q~~~v~~DTGS~~~Wv~~~~ 126 (402)
+.|. ++++.+++|||++.+-+....
T Consensus 3 v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 3 ITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEC--CEEEEEEEECCCCeEEECHHH
Confidence 4554 489999999999999987543
No 34
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=79.53 E-value=2.8 Score=32.70 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=22.2
Q ss_pred EEEEEeCCCCcEEEEEEECCCCceEEeCC
Q 037429 97 IVQVGIGSPPLNVFLLMDTGGGLIWTQCQ 125 (402)
Q Consensus 97 ~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~ 125 (402)
+.+|.|.. +++.+++||||+..-++..
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSG
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccc
Confidence 45677774 7999999999999888755
No 35
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=70.50 E-value=14 Score=33.18 Aligned_cols=80 Identities=11% Similarity=0.059 Sum_probs=56.1
Q ss_pred ccCCeEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCCC
Q 037429 90 LREGFYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQ 169 (402)
Q Consensus 90 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~ 169 (402)
...+|.|.++..|- +|++..++|||-+.+-+.-..-. .--||..+. +
T Consensus 100 k~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~------RlGid~~~l-------------------------~ 146 (215)
T COG3577 100 KSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR------RLGIDLNSL-------------------------D 146 (215)
T ss_pred ecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH------HhCCCcccc-------------------------C
Confidence 45789999999996 49999999999998887644211 011333321 0
Q ss_pred CceEEeeCCCCeEeEEEEEEEEEEecCCCCceeeccEE
Q 037429 170 CVYSVGYGGGGTTKGVASFESFRFATDSSSATTVDNII 207 (402)
Q Consensus 170 ~~~~~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~ 207 (402)
.++.+.=++|....-.+-.|.|.||+. .+.|+.
T Consensus 147 y~~~v~TANG~~~AA~V~Ld~v~IG~I-----~~~nV~ 179 (215)
T COG3577 147 YTITVSTANGRARAAPVTLDRVQIGGI-----RVKNVD 179 (215)
T ss_pred CceEEEccCCccccceEEeeeEEEccE-----EEcCch
Confidence 455666677877767788899999987 665554
No 36
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=67.46 E-value=15 Score=35.93 Aligned_cols=103 Identities=21% Similarity=0.244 Sum_probs=0.0
Q ss_pred EEEEEeCCCC----cEE-EEEEECCCCceEEeCCCCCCcccCCCCCcCCCCCCccccCCCCCcCCCCCCCCCCCCCCCCc
Q 037429 97 IVQVGIGSPP----LNV-FLLMDTGGGLIWTQCQPCKNCYRQQFPIYNSVASSTYRKLPCDHPLCQGDNNLYKCVDQQCV 171 (402)
Q Consensus 97 ~~~i~vGtP~----q~~-~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~p~~SsT~~~v~C~s~~C~~~~~~~~C~~~~~~ 171 (402)
++.|+|=-|. |.+ +|++||||.=|-|... .-.++-...++-....-..+.. |.
T Consensus 25 ~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~s--------------Al~~~l~~~Lp~~t~~g~~laE--------C~ 82 (370)
T PF11925_consen 25 TVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFAS--------------ALPSSLAGSLPQQTGGGAPLAE--------CA 82 (370)
T ss_pred eeEEEEeCCCCCCceeeCcEEEeccchhhhHHHh--------------hhchhhhccCCcccCCCcchhh--------hh
Q ss_pred eEEeeCCCCeEeEEEEEEEEEEecCCCCceeeccEEEEeeeC----------------CCCcccccCCccceeeecCC
Q 037429 172 YSVGYGGGGTTKGVASFESFRFATDSSSATTVDNIIFGCSND----------------NQNIQFASRGVISGILGLSS 233 (402)
Q Consensus 172 ~~~~Y~dGs~~~G~~~~D~v~~~~~~~~~~~~~~~~fG~~~~----------------~~~~~~~~~~~~~GIlGLg~ 233 (402)
.|++|..+ |-+.+-.|+|++. .-.++++-++.+ ... .....+.||||+|.
T Consensus 83 ---~F~sgytW-GsVr~AdV~igge-----~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t---~~~lgaNGILGIg~ 148 (370)
T PF11925_consen 83 ---QFASGYTW-GSVRTADVTIGGE-----TASSIPIQVIGDSAAPSVPSSCSNSGASMNT---VADLGANGILGIGP 148 (370)
T ss_pred ---hccCcccc-cceEEEEEEEcCe-----eccccCEEEEcCCCCCCCCchhhcCCCCCCC---cccccCceEEeecC
No 37
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=63.26 E-value=10 Score=29.20 Aligned_cols=25 Identities=20% Similarity=0.050 Sum_probs=20.8
Q ss_pred EEEeCCCCcEEEEEEECCCCceEEeCC
Q 037429 99 QVGIGSPPLNVFLLMDTGGGLIWTQCQ 125 (402)
Q Consensus 99 ~i~vGtP~q~~~v~~DTGS~~~Wv~~~ 125 (402)
.+.|+ .|.+.+++|||++++-+.-.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 59999999999999998754
No 38
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=48.37 E-value=24 Score=30.57 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=21.1
Q ss_pred EEEEeCCCCcEEEEEEECCCCceEEeCC
Q 037429 98 VQVGIGSPPLNVFLLMDTGGGLIWTQCQ 125 (402)
Q Consensus 98 ~~i~vGtP~q~~~v~~DTGS~~~Wv~~~ 125 (402)
..+.++.-..++.++|||||..-.+...
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeehh
Confidence 3445555568999999999998887653
No 39
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=33.75 E-value=75 Score=26.26 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=23.7
Q ss_pred CeEEEEEEEeCCCCcEEEEEEECCCCceEEeCCCCCCc
Q 037429 93 GFYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQPCKNC 130 (402)
Q Consensus 93 ~~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~~C~~C 130 (402)
...+|++++|+. +++.+.+|||...+-+.-.-+..|
T Consensus 22 v~mLyI~~~ing--~~vkA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 22 VSMLYINCKING--VPVKAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp ----EEEEEETT--EEEEEEEETT-SS-EEEHHHHHHT
T ss_pred cceEEEEEEECC--EEEEEEEeCCCCccccCHHHHHHc
Confidence 467899999995 999999999999887764422344
No 40
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=29.78 E-value=69 Score=25.49 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=18.5
Q ss_pred EEEEeCCCC----cEEEEEEECCCCceE
Q 037429 98 VQVGIGSPP----LNVFLLMDTGGGLIW 121 (402)
Q Consensus 98 ~~i~vGtP~----q~~~v~~DTGS~~~W 121 (402)
++|.|..|. -++.+++|||.+..-
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~ 29 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFL 29 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEE
Confidence 578888873 368899999998653
No 41
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=24.13 E-value=90 Score=29.88 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=23.1
Q ss_pred CeEEEEE---EEeCCC-----CcEEEEEEECCCCceEEeCC
Q 037429 93 GFYYIVQ---VGIGSP-----PLNVFLLMDTGGGLIWTQCQ 125 (402)
Q Consensus 93 ~~~Y~~~---i~vGtP-----~q~~~v~~DTGS~~~Wv~~~ 125 (402)
...|.++ |.||.. .+...+++|||++++++|-.
T Consensus 187 ~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 187 KGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred CcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 3456665 577752 23457999999999999853
No 42
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=23.08 E-value=85 Score=29.31 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=23.3
Q ss_pred eEEEEE---EEeCC---CCcEEEEEEECCCCceEEeCC
Q 037429 94 FYYIVQ---VGIGS---PPLNVFLLMDTGGGLIWTQCQ 125 (402)
Q Consensus 94 ~~Y~~~---i~vGt---P~q~~~v~~DTGS~~~Wv~~~ 125 (402)
..|.++ |+||. +.....++||||++++.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 567655 57873 223467999999999999864
No 43
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=22.99 E-value=86 Score=28.93 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=25.3
Q ss_pred CeEEEEE---EEeCC-----CCcEEEEEEECCCCceEEeCCC
Q 037429 93 GFYYIVQ---VGIGS-----PPLNVFLLMDTGGGLIWTQCQP 126 (402)
Q Consensus 93 ~~~Y~~~---i~vGt-----P~q~~~v~~DTGS~~~Wv~~~~ 126 (402)
...|.+. |.||. ......++||||+..+|++..-
T Consensus 179 ~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~ 220 (283)
T cd05471 179 PGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSV 220 (283)
T ss_pred CCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHH
Confidence 5566655 46665 2466799999999999998653
No 44
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=22.65 E-value=83 Score=29.40 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=23.7
Q ss_pred CeEEEEEE---EeCCC----CcEEEEEEECCCCceEEeCC
Q 037429 93 GFYYIVQV---GIGSP----PLNVFLLMDTGGGLIWTQCQ 125 (402)
Q Consensus 93 ~~~Y~~~i---~vGtP----~q~~~v~~DTGS~~~Wv~~~ 125 (402)
...|.+++ .||.- .....++||||++.+++|-.
T Consensus 176 ~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~ 215 (278)
T cd06097 176 SGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDA 215 (278)
T ss_pred CcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHH
Confidence 45666554 67642 35578999999999999864
No 45
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=22.16 E-value=1.3e+02 Score=25.08 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=24.7
Q ss_pred eEEEEEEEeCCCCcEEEEEEECCCCceEEeCC
Q 037429 94 FYYIVQVGIGSPPLNVFLLMDTGGGLIWTQCQ 125 (402)
Q Consensus 94 ~~Y~~~i~vGtP~q~~~v~~DTGS~~~Wv~~~ 125 (402)
-.-.+.+.|.+ ++..++||+|+....+...
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 45667888887 9999999999998888654
No 46
>PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function []. However, it seems likely that these proteins act as aspartic peptidases.
Probab=20.60 E-value=50 Score=28.36 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=16.4
Q ss_pred CcEEEEEEECCCCceEEeCC
Q 037429 106 PLNVFLLMDTGGGLIWTQCQ 125 (402)
Q Consensus 106 ~q~~~v~~DTGS~~~Wv~~~ 125 (402)
.++.+++|||||...+|.-.
T Consensus 10 ~~~~~~LlDsGSq~SfIt~~ 29 (164)
T PF05585_consen 10 QVEARALLDSGSQRSFITES 29 (164)
T ss_pred EEEEEEEEecCCchhHHhHH
Confidence 46778999999999998543
No 47
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=20.16 E-value=99 Score=21.55 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=14.7
Q ss_pred EEEeCCCCcEEEEEEECCCCce
Q 037429 99 QVGIGSPPLNVFLLMDTGGGLI 120 (402)
Q Consensus 99 ~i~vGtP~q~~~v~~DTGS~~~ 120 (402)
++.++. ..+..++|||+...
T Consensus 2 ~~~~~~--~~~~~liDtgs~~~ 21 (92)
T cd00303 2 KGKING--VPVRALVDSGASVN 21 (92)
T ss_pred EEEECC--EEEEEEEcCCCccc
Confidence 344553 78899999998754
Done!