Query 037430
Match_columns 198
No_of_seqs 106 out of 1061
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 20:56:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_B 60S ribosomal protein L 100.0 2.5E-79 8.5E-84 525.7 13.9 198 1-198 1-198 (261)
2 4a17_A RPL8; eukaryotic riboso 100.0 1.2E-78 4.2E-83 521.7 14.2 198 1-198 1-199 (264)
3 3j21_B 50S ribosomal protein L 100.0 4.1E-77 1.4E-81 507.3 13.5 190 1-198 1-191 (239)
4 3jyw_B 60S ribosomal protein L 100.0 1.8E-78 6.2E-83 516.3 2.9 197 2-198 1-197 (243)
5 1vq8_A 50S ribosomal protein L 100.0 3.5E-75 1.2E-79 495.3 13.2 188 1-198 1-189 (240)
6 1giy_D 50S ribosomal protein L 100.0 2.4E-69 8.3E-74 443.1 17.9 164 28-198 1-164 (178)
7 3r8s_C 50S ribosomal protein L 100.0 8.6E-69 2.9E-73 462.9 13.7 173 10-189 40-214 (271)
8 3v2d_D 50S ribosomal protein L 100.0 2E-68 7E-73 461.5 15.2 173 10-189 41-216 (276)
9 3bbo_E Ribosomal protein L2; l 100.0 9.1E-69 3.1E-73 462.7 -4.9 172 11-189 38-211 (269)
10 1rl2_A Protein (ribosomal prot 100.0 3.8E-61 1.3E-65 380.8 11.5 137 28-171 1-137 (137)
11 2ftc_B Mitochondrial ribosomal 100.0 2.5E-57 8.4E-62 358.4 15.0 131 45-183 1-136 (136)
12 2cqa_A RUVB-like 2; TIP48, TIP 78.5 5.3 0.00018 29.1 5.9 49 37-91 10-72 (95)
13 3kdf_A Replication protein A 1 35.7 62 0.0021 23.9 5.1 46 124-172 29-76 (121)
14 2pi2_E Replication protein A 1 32.6 71 0.0024 24.4 5.1 44 124-172 50-97 (142)
15 2l8d_A Lamin-B receptor; DNA b 30.0 47 0.0016 22.4 3.2 25 38-66 24-48 (66)
16 3hks_A EIF-5A-2, eukaryotic tr 28.1 98 0.0034 24.3 5.3 56 95-158 33-90 (167)
17 2dhx_A Poly (ADP-ribose) polym 27.6 8.5 0.00029 28.4 -1.0 62 42-112 37-99 (104)
18 1yat_A FK506 binding protein; 27.4 60 0.002 22.8 3.6 44 76-119 66-110 (113)
19 2dig_A Lamin-B receptor; tudor 27.3 50 0.0017 22.4 2.9 25 38-66 27-51 (68)
20 3d4r_A Domain of unknown funct 26.2 1.5E+02 0.0052 23.5 6.0 61 103-169 92-152 (169)
21 3cpf_A Eukaryotic translation 25.9 1E+02 0.0035 23.2 4.9 56 95-158 11-68 (138)
22 3tzg_A Hypothetical protein BV 25.5 1.6E+02 0.0056 23.4 6.2 56 40-123 18-73 (252)
23 4dip_A Peptidyl-prolyl CIS-tra 23.7 83 0.0028 22.5 3.9 43 76-119 76-119 (125)
24 1x6o_A Eukaryotic initiation f 23.6 98 0.0034 24.5 4.5 58 95-160 35-94 (174)
25 3er0_A Eukaryotic translation 22.5 1.3E+02 0.0046 23.5 5.1 56 95-159 35-93 (167)
26 2pbc_A FK506-binding protein 2 20.6 1.2E+02 0.004 20.6 4.0 44 76-119 50-94 (102)
27 3b7x_A FK506-binding protein 6 20.3 97 0.0033 22.6 3.7 42 78-119 88-130 (134)
28 4gop_A Putative uncharacterize 20.1 1E+02 0.0036 22.4 3.8 46 124-172 25-70 (114)
No 1
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_B 2zkr_a
Probab=100.00 E-value=2.5e-79 Score=525.70 Aligned_cols=198 Identities=88% Similarity=1.490 Sum_probs=194.1
Q ss_pred CCcccceeecCCCCcceeeccccccCceeEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceEEEEEecc
Q 037430 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAE 80 (198)
Q Consensus 1 mgk~~~~qr~Gr~~~~R~~~~~r~g~~~yr~Idf~r~~~~~~~~V~~I~yDP~Rsa~Ialv~~~~g~~~~~~~~yila~e 80 (198)
|||+|++||+|||++||+++|||+|..+||+|||+|++.+++++|++|||||||||+||||.|.||+.++.+++||||||
T Consensus 1 Mg~~i~~qr~G~g~~fra~~~~r~g~~~yR~iDf~r~~~~i~g~V~~IeyDPnRsA~IAlV~~~dg~~~k~~k~yIlApe 80 (261)
T 3iz5_B 1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAE 80 (261)
T ss_dssp CCSCCHHHHSSSCTTTSCCTTTSCCCCCCCCCCSCCBSSSSEEEEEEEEEETTTTEEEEEEECCCCSSSCCCCCEEECBT
T ss_pred CCCcchhhcCCCCCCccCccccccCCcccCceecccccCCccEEEEEEEECCCceeEEEEEEecCCCcccceEEEEEecc
Confidence 99999999999999999999999999999999999998889999999999999999999999999988877889999999
Q ss_pred CCCcccEEEEcCCcccccCCcccCcCCCCCCcceeeeeecCCCceEEecCCCeEEEEeecCCCCEEEEEcCCCcEEEEcC
Q 037430 81 GMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPS 160 (198)
Q Consensus 81 g~~~Gd~I~~g~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~pg~Ggk~~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~ 160 (198)
||++||+|+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++|++|+++++|||||||+|+|++
T Consensus 81 Gl~vGd~I~sG~~a~i~~GN~LPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~ 160 (261)
T 3iz5_B 81 GMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPS 160 (261)
T ss_dssp TCBTTCEEEBSTTCCSCTTCEEEGGGSCTTEEEESBCSSTTSCCCBSCSTTCCEEEEECSSCSSCEEEECTTSCEEEECT
T ss_pred CCCCCCEEEeCCCCCCCCCCEeccccCCCCCEEEEEEecCCCcceEEEecCCeEEEEEeccCCCEEEEECCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999767899999999999999999
Q ss_pred CCceeEEEeeCCCcCceeeeccchhhhccccccCCCCC
Q 037430 161 GCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPK 198 (198)
Q Consensus 161 ~c~AtIG~vsn~~~~~~~~gKAG~~r~~~k~~~~~~p~ 198 (198)
+|+||||+|||.+|.+++|+|||++||++|+++..||+
T Consensus 161 ~CrATIG~Vsn~~~~~k~lgKAGr~r~~~k~k~g~rP~ 198 (261)
T 3iz5_B 161 SCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPK 198 (261)
T ss_dssp TCEEEESCBSSTTTTTSCCCCHHHHHHHHHTSSCCCSC
T ss_pred CCcEEEEEecCCccccceecccchhhhhhhccCCCCCc
Confidence 99999999999999999999999999999999999996
No 2
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Probab=100.00 E-value=1.2e-78 Score=521.68 Aligned_cols=198 Identities=64% Similarity=1.161 Sum_probs=192.6
Q ss_pred CCcccceeecCCC-CcceeeccccccCceeEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceEEEEEec
Q 037430 1 MGRVIRAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAA 79 (198)
Q Consensus 1 mgk~~~~qr~Gr~-~~~R~~~~~r~g~~~yr~Idf~r~~~~~~~~V~~I~yDP~Rsa~Ialv~~~~g~~~~~~~~yila~ 79 (198)
|||+|++||+||| ++||.++|||+|..+||+|||+|++.+++++|++|||||||||+||||.|.||+.++.+++|||||
T Consensus 1 Mg~~i~~qr~G~g~~~fr~~~~~r~g~~~yR~IDf~r~~~~i~g~V~~IeyDPnRsA~IAlv~~~dg~~~k~~k~YIlAp 80 (264)
T 4a17_A 1 MGRVIRAQRKGRANGVYKSHKSGRIAPAQYRVYDFAERQGYIRGCIRDIVHEPGRGAPLAEVAFRDPYRYKTNKEHFIAA 80 (264)
T ss_dssp -CCCCHHHHTTCSSSSCCCCCTTCCCCCCCCCCCHHHHHSEEEEEEEEEECCTTCSSCEEEEEEECTTSSCEEEEEEECB
T ss_pred CCCcchhhcCCCCCCceeCCccccccccccceeeecccCCCcCEEEEEEEECCCCCceEEEEEecCCCcccceEEEEEee
Confidence 9999999999996 999999999999999999999999888999999999999999999999999998777789999999
Q ss_pred cCCCcccEEEEcCCcccccCCcccCcCCCCCCcceeeeeecCCCceEEecCCCeEEEEeecCCCCEEEEEcCCCcEEEEc
Q 037430 80 EGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIP 159 (198)
Q Consensus 80 eg~~~Gd~I~~g~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~pg~Ggk~~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~ 159 (198)
|||++||+|+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++|++|+++++|||||||+|+|+
T Consensus 81 eGl~vGd~I~sg~~a~i~~GN~LPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~ 160 (264)
T 4a17_A 81 EGQYSGQYVYCGLKAQIAVGNVLPINRIPEGTVVCNVEEKVGDRGTFSRASGCYATIIGHSEDGDKTRIRLPSGARKTIP 160 (264)
T ss_dssp TTCBTTCEEEEESSCCCCTTCEEEGGGSCTTCEEESBCSSTTCSCCBCCSTTCCEEEEEECSSSCEEEEECTTSCEEEEE
T ss_pred cCCccccEEEECCCCCCCcCCcccHhhCCCCCEEEEEEecCCCcceEEEeCCCeEEEEEEccCCCEEEEECCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999977789999999999999999
Q ss_pred CCCceeEEEeeCCCcCceeeeccchhhhccccccCCCCC
Q 037430 160 SGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPK 198 (198)
Q Consensus 160 ~~c~AtIG~vsn~~~~~~~~gKAG~~r~~~k~~~~~~p~ 198 (198)
++|+||||+|||.+|.+++|+|||++||++|++..+||+
T Consensus 161 ~~CrATIG~Vsn~~~~~~~l~KAGr~r~~~k~k~~~rP~ 199 (264)
T 4a17_A 161 GSCRATVGIVAGGGRTDKPILKAGNQFHKYARKRKSWPR 199 (264)
T ss_dssp TTCEEEESCBSSTTGGGSCCCCHHHHHHHHHTSSCCCSC
T ss_pred ccCcEEEEeccCCccccceeeecchhhhhhhccCCCCCC
Confidence 999999999999999999999999999999999999996
No 3
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4.1e-77 Score=507.31 Aligned_cols=190 Identities=47% Similarity=0.846 Sum_probs=186.3
Q ss_pred CCcccceeecCCC-CcceeeccccccCceeEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceEEEEEec
Q 037430 1 MGRVIRAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAA 79 (198)
Q Consensus 1 mgk~~~~qr~Gr~-~~~R~~~~~r~g~~~yr~Idf~r~~~~~~~~V~~I~yDP~Rsa~Ialv~~~~g~~~~~~~~yila~ 79 (198)
|||+|++||+||| ++||.++||+.|..+||.|||+ ++.+++++|++|||||||||+||||.|.|| +++|||||
T Consensus 1 mg~~i~~qr~G~g~~~f~~~~~~~~~~~~yR~iDf~-r~~~i~g~V~~IeyDPnRsA~IALV~~~dg-----ek~YIlAp 74 (239)
T 3j21_B 1 MGKSLIQQRRGKGSPTFKSPSHRFRGAVKYIPLNYT-QEKTLRGVVEEIMHDPGRTAPVARVKFENG-----IEKLIIAP 74 (239)
T ss_dssp CCCCCHHHHHTTTCGGGCCCSSSCCCCCCCCSTTCS-TTCCEEEEEEEEEEETTTTEEEEEEEESSS-----CEEEECCB
T ss_pred CCCcchhhccCCCCCceeCCcccccchhhcceeccc-cCCCccEEEEEEEECCCCCeeEEEEEecCC-----CEEEEEcc
Confidence 9999999999999 9999999999999999999999 567899999999999999999999999999 68999999
Q ss_pred cCCCcccEEEEcCCcccccCCcccCcCCCCCCcceeeeeecCCCceEEecCCCeEEEEeecCCCCEEEEEcCCCcEEEEc
Q 037430 80 EGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIP 159 (198)
Q Consensus 80 eg~~~Gd~I~~g~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~pg~Ggk~~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~ 159 (198)
|||++||+|+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++| ++++++|||||||+|+|+
T Consensus 75 eGl~vGd~I~sG~~a~i~~GN~LPL~~iP~GT~I~NIE~~pG~gg~laRsAGt~A~ii~k--~~~~~~vrLPSGe~r~v~ 152 (239)
T 3j21_B 75 EGLLVGQEIYIGPDAPIAVGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSR--EPDKVIVQLPSGELKAFN 152 (239)
T ss_dssp TTCCTTCEEEESSSSCSSTTCEEETTTSCTTCEEESCCSSSSSCCCSCCSTTCCEEEEEE--CSSCEEEECTTSCEEEEC
T ss_pred ccCccccEEEECCCCCCCcCCEeeccccCCCCEEEeEEecCCCceeEEEecCCeEEEEEe--cCCEEEEEcCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred CCCceeEEEeeCCCcCceeeeccchhhhccccccCCCCC
Q 037430 160 SGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPK 198 (198)
Q Consensus 160 ~~c~AtIG~vsn~~~~~~~~gKAG~~r~~~k~~~~~~p~ 198 (198)
.+|+||||+|||.+|.+++|+|||++||++|+++.+||+
T Consensus 153 ~~c~AtIG~Vsn~~~~~~~lgKAGr~r~~~k~k~g~rP~ 191 (239)
T 3j21_B 153 PMCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPT 191 (239)
T ss_dssp TTCEEEESCBSCCSTTTSCCCSHHHHHHHHTSSCCCCSC
T ss_pred ccCeEEEeeccCcccccceeeecChhhccchhhcCCCce
Confidence 999999999999999999999999999999999999996
No 4
>3jyw_B 60S ribosomal protein L2; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_B 3izs_B 3o58_B 3o5h_B 3u5e_A 3u5i_A 4b6a_A 1s1i_B
Probab=100.00 E-value=1.8e-78 Score=516.31 Aligned_cols=197 Identities=64% Similarity=1.157 Sum_probs=192.5
Q ss_pred CcccceeecCCCCcceeeccccccCceeEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceEEEEEeccC
Q 037430 2 GRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEG 81 (198)
Q Consensus 2 gk~~~~qr~Gr~~~~R~~~~~r~g~~~yr~Idf~r~~~~~~~~V~~I~yDP~Rsa~Ialv~~~~g~~~~~~~~yila~eg 81 (198)
||+|++||+|||++||+++|||+|+.+||+|||+|++.+++++|++|||||||||+||||.|.||+.++.+++|||||||
T Consensus 1 g~~i~~qr~G~g~~fr~~~~~r~g~~~yR~iDf~r~~~~i~g~V~~IeyDPnRsA~IAlv~~~dg~~~k~~k~yIlApeG 80 (243)
T 3jyw_B 1 GRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAKVVFRDPYKYRLREEIFIANEG 80 (243)
T ss_dssp CCCCTTTTTSSCSTTCCCSSSSCCCSCCCCCCSCCSSCSSCCBBCCCCEETTTTEECCBBCCSSCCSSSSCCCBCCCCTT
T ss_pred CCccceecCCCCCcccCCccccccchhcceeeecccCCCcCEEEEEEEECCCceeEEEEEEecCCCcccceEEEEEeecC
Confidence 79999999999999999999999999999999999988899999999999999999999999999877778899999999
Q ss_pred CCcccEEEEcCCcccccCCcccCcCCCCCCcceeeeeecCCCceEEecCCCeEEEEeecCCCCEEEEEcCCCcEEEEcCC
Q 037430 82 MYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSG 161 (198)
Q Consensus 82 ~~~Gd~I~~g~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~pg~Ggk~~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~ 161 (198)
|++||+|+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++|++|+++++|||||||+|+|+++
T Consensus 81 l~vGd~I~sg~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~gg~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~~ 160 (243)
T 3jyw_B 81 VHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSD 160 (243)
T ss_dssp CCSSCBCCCSTTCCCCBTCEEESSSSCTTEEEESBCCSSCCSCCBCCSSSCCEEECCCSSSCSSBCEECSSSCCCCBSSC
T ss_pred CccccEEEECCCCCCCcCCEeccccCCCCCEEEEEEecCCCcceEEEecCCeEEEEEEccCCCEEEEECCCCCEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999997678999999999999999999
Q ss_pred CceeEEEeeCCCcCceeeeccchhhhccccccCCCCC
Q 037430 162 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPK 198 (198)
Q Consensus 162 c~AtIG~vsn~~~~~~~~gKAG~~r~~~k~~~~~~p~ 198 (198)
|+||||+|||.+|.+++|+|||++||++|++..+||+
T Consensus 161 c~ATIG~Vsn~~~~~~~l~KAGr~r~~~k~k~~~rP~ 197 (243)
T 3jyw_B 161 ARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPK 197 (243)
T ss_dssp CEEEESCCSCCCSSSSCCSCSTTTTTSTTTSCSCCSC
T ss_pred CeEEEEeccCCccccceecccChhhhhhhccCCCCCc
Confidence 9999999999999999999999999999999999996
No 5
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ...
Probab=100.00 E-value=3.5e-75 Score=495.31 Aligned_cols=188 Identities=45% Similarity=0.788 Sum_probs=183.2
Q ss_pred CCcccceeecCCC-CcceeeccccccCceeEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceEEEEEec
Q 037430 1 MGRVIRAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAA 79 (198)
Q Consensus 1 mgk~~~~qr~Gr~-~~~R~~~~~r~g~~~yr~Idf~r~~~~~~~~V~~I~yDP~Rsa~Ialv~~~~g~~~~~~~~yila~ 79 (198)
|||+|++||+|+| ++||.++||+.|..+||.|| | +.+++++|++|||||||+|+||||.|.|| +++|||||
T Consensus 1 Mgk~i~~qr~G~g~~~fr~~~~~~~~~~~yR~iD--R-~~~i~g~V~~IeyDPnRsA~IAlv~y~dg-----~k~yIlAp 72 (240)
T 1vq8_A 1 MGRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVE--D-GDVIAGTVVDIEHDPARSAPVAAVEFEDG-----DRRLILAP 72 (240)
T ss_dssp -CCCCHHHHHTTCCGGGSCCGGGCCCCCCCCCCC--S-SSCCEEEEEEEEEETTTTEEEEEEEETTS-----CEEEECCB
T ss_pred CCccchhhccCCCCCcccCcCccccCchhceeee--c-cCCccEEEEEEEECCCCceeEEEEEecCC-----CEEEEEec
Confidence 9999999999999 69999999999999999999 6 67899999999999999999999999999 58999999
Q ss_pred cCCCcccEEEEcCCcccccCCcccCcCCCCCCcceeeeeecCCCceEEecCCCeEEEEeecCCCCEEEEEcCCCcEEEEc
Q 037430 80 EGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIP 159 (198)
Q Consensus 80 eg~~~Gd~I~~g~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~pg~Ggk~~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~ 159 (198)
|||++||+|+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++| |+++++|||||||+|+|+
T Consensus 73 ~gl~vGd~I~sg~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k--e~~~~~vrLPSGe~r~v~ 150 (240)
T 1vq8_A 73 EGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRNVAVVKLPSGEMKRLD 150 (240)
T ss_dssp TTCBTTCEEEBSTTCCSCTTCEEEGGGSCTTCEEESBCSSTTSCCCBSCSTTCCEEEEEC--CSSCEEEECTTSCEEEEC
T ss_pred CCCccCeEEEECCCccccccccccccCCCCCCEEEeEeccCCCCceEEEeCCCeEEEEEe--cCCEEEEECCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999 799999999999999999
Q ss_pred CCCceeEEEeeCCCcCceeeeccchhhhccccccCCCCC
Q 037430 160 SGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPK 198 (198)
Q Consensus 160 ~~c~AtIG~vsn~~~~~~~~gKAG~~r~~~k~~~~~~p~ 198 (198)
++|+||||+|||.+|.+++|+|||++||++|+++.+||+
T Consensus 151 ~~crAtIG~Vsn~~~~~~~lgKAG~~r~~gk~k~~~rP~ 189 (240)
T 1vq8_A 151 PQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPN 189 (240)
T ss_dssp TTCEEEESCBTTTTTTTSCCCSHHHHHHHHTTSSCCCSC
T ss_pred chheeeEEEecCcchhccccccCccccccccccCCCCCc
Confidence 999999999999999999999999999999999999996
No 6
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=100.00 E-value=2.4e-69 Score=443.12 Aligned_cols=164 Identities=37% Similarity=0.666 Sum_probs=160.8
Q ss_pred eeEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceEEEEEeccCCCcccEEEEcCCcccccCCcccCcCC
Q 037430 28 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSI 107 (198)
Q Consensus 28 ~yr~Idf~r~~~~~~~~V~~I~yDP~Rsa~Ialv~~~~g~~~~~~~~yila~eg~~~Gd~I~~g~~~~~~~Gn~lpL~~I 107 (198)
+||+|||+|++.+++++|++|||||||||+||||.|.|| +++||||||||++||+|++|.++++++||+|||.+|
T Consensus 1 ~yR~iDf~r~~~~i~~~V~~IeyDP~RsA~IAlv~y~dg-----~~~yilAp~gl~~Gd~I~~g~~a~i~~GN~lpL~~i 75 (178)
T 1giy_D 1 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAPKNLKVGMEIMSGPDADIKIGNALPLENI 75 (178)
T ss_pred CCceeecccccCCccEEEEEEEECCCCCeEEEEEEecCC-----CEEEEECccCCccccEEEECCCCccccCCCcccccC
Confidence 589999999988899999999999999999999999999 589999999999999999999999999999999999
Q ss_pred CCCCcceeeeeecCCCceEEecCCCeEEEEeecCCCCEEEEEcCCCcEEEEcCCCceeEEEeeCCCcCceeeeccchhhh
Q 037430 108 PEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYH 187 (198)
Q Consensus 108 P~Gt~I~nIE~~pg~Ggk~~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~vsn~~~~~~~~gKAG~~r~ 187 (198)
|+||.|||||+.||+||||||||||||+|++| |+++++|||||||+|+|+++|+||||+|||.+|.+++|+|||++||
T Consensus 76 P~Gt~I~NIE~~pG~gg~laRsAGt~a~ii~k--e~~~~~vrLPSGe~r~v~~~c~AtIG~Vsn~~~~~~~lgKAG~~r~ 153 (178)
T 1giy_D 76 PVGTLVHNIELKPGRGGQLVRAAGTSAQVLGK--EGKYVIVRLASGEVRMILGKCRATVGEVGNGGRTDKPFVKAGNKHH 153 (178)
T ss_pred CCCCEEEeEeccCCCCeEEEEeCCCeEEEEEe--cCCeEEEECCCCCEEEEcccCcEEEEEecCcchhcCeecccchhhc
Confidence 99999999999999999999999999999999 7999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCC
Q 037430 188 KFRVKRNCWPK 198 (198)
Q Consensus 188 ~~k~~~~~~p~ 198 (198)
++|+++++||+
T Consensus 154 ~gk~k~~~rP~ 164 (178)
T 1giy_D 154 KMKARGTKWPN 164 (178)
T ss_pred CCCccCCcCCc
Confidence 99999999996
No 7
>3r8s_C 50S ribosomal protein L2; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_C 3j19_C 2wwq_C 3oat_C* 3oas_C* 3ofd_C 3ofc_C 3ofr_C* 3ofz_C* 3og0_C 3ofq_C 3r8t_C 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C ...
Probab=100.00 E-value=8.6e-69 Score=462.86 Aligned_cols=173 Identities=31% Similarity=0.514 Sum_probs=168.2
Q ss_pred cCCCCcceeeccccccC--ceeEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceEEEEEeccCCCcccE
Q 037430 10 KGAGSVFKSHTHHRKGP--AQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQF 87 (198)
Q Consensus 10 ~Gr~~~~R~~~~~r~g~--~~yr~Idf~r~~~~~~~~V~~I~yDP~Rsa~Ialv~~~~g~~~~~~~~yila~eg~~~Gd~ 87 (198)
-||+++|||+++||+|| ++||+|||+|++.+++++|++|||||||+|+||||.|.|| +++||||||||++||+
T Consensus 40 ~GRNn~GrIt~rhrGGGhKr~yR~IDf~r~~~~i~g~V~~IeyDPnRsA~IAlv~~~dg-----~k~YIlAp~gl~~Gd~ 114 (271)
T 3r8s_C 40 GGRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQ 114 (271)
T ss_dssp TTBCTTSCBSSTTBCCCCCCCEECBCCSCCCBSCCEEEEEEEECTTSSSEEEEEEETTS-----CEEEEECBTTCCSSCB
T ss_pred CCcCCCCCEEEeecCCCcCcceEEEeeccccCCCCEEEEEEEECCCCceeEEEEEecCC-----CEEEEEeeCCCcCCCE
Confidence 46889999999999998 5899999999998899999999999999999999999999 5899999999999999
Q ss_pred EEEcCCcccccCCcccCcCCCCCCcceeeeeecCCCceEEecCCCeEEEEeecCCCCEEEEEcCCCcEEEEcCCCceeEE
Q 037430 88 VYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIG 167 (198)
Q Consensus 88 I~~g~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~pg~Ggk~~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG 167 (198)
|+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++| |+++++|||||||+|+|+.+|+||||
T Consensus 115 I~sg~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k--~~~~~~vrLPSGe~r~i~~~c~ATIG 192 (271)
T 3r8s_C 115 IQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLG 192 (271)
T ss_dssp CCBSSSSCSSTTCEEEGGGSCTTCEEESCCSSTTTCCCSCCSTTCCEEEEEC--STTEEEEECTTSCEEEEETTCEEEES
T ss_pred EEECCCCCCCcCcEeehhhCCCCCEEEEEEecCCCCceEEEeCCCeEEEEEe--cCCEEEEECCCCCeEEEcccCeEEEE
Confidence 9999999999999999999999999999999999999999999999999999 79999999999999999999999999
Q ss_pred EeeCCCcCceeeeccchhhhcc
Q 037430 168 QVAGGGRTEKPLLKAGNAYHKF 189 (198)
Q Consensus 168 ~vsn~~~~~~~~gKAG~~r~~~ 189 (198)
+|||.+|.+++|+|||++||+.
T Consensus 193 ~Vsn~~~~~~~lgKAGr~rw~g 214 (271)
T 3r8s_C 193 EVGNAEHMLRVLGKAGAARWRG 214 (271)
T ss_dssp CBSCSGGGGCCCCSHHHHHTTT
T ss_pred eecCcchhhcEecccccccCCC
Confidence 9999999999999999999993
No 8
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ...
Probab=100.00 E-value=2e-68 Score=461.50 Aligned_cols=173 Identities=32% Similarity=0.441 Sum_probs=167.8
Q ss_pred cCCCCcceeeccccccC--ceeEeeeccc-ccCCceeEEEEEEeCCCCccceEEEEecCCCccCceEEEEEeccCCCccc
Q 037430 10 KGAGSVFKSHTHHRKGP--AQFRSLDFGE-RNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQ 86 (198)
Q Consensus 10 ~Gr~~~~R~~~~~r~g~--~~yr~Idf~r-~~~~~~~~V~~I~yDP~Rsa~Ialv~~~~g~~~~~~~~yila~eg~~~Gd 86 (198)
-||+++|||+++||+|| ++||+|||+| ++.++.++|++|||||||+|+||||.|.|| +++||||||||++||
T Consensus 41 ~GRNn~GrIt~rhrGGGhKr~yR~IDf~R~~k~~i~g~V~~IeyDPnRsA~IAlv~~~dg-----~k~yIlAp~gl~~Gd 115 (276)
T 3v2d_D 41 GGRNNQGRITVRFRGGGHKRLYRIIDFKRWDKVGIPAKVAAIEYDPNRSARIALLHYVDG-----EKRYIIAPDGLQVGQ 115 (276)
T ss_dssp TTBCTTSCBSSSSBCCCCCCEEECCCCCCGGGTTCCEEEEEEECCTTSSSCEEEEEETTS-----CEEEEECBTTCCTTC
T ss_pred CCcCCCCCEEEeecCCCcccceEEeeeccccCCCCCEEEEEEEECCCCCceEEEEEeCCC-----CEEEEEeeCCCcCCC
Confidence 46889999999999998 5899999999 777889999999999999999999999999 589999999999999
Q ss_pred EEEEcCCcccccCCcccCcCCCCCCcceeeeeecCCCceEEecCCCeEEEEeecCCCCEEEEEcCCCcEEEEcCCCceeE
Q 037430 87 FVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMI 166 (198)
Q Consensus 87 ~I~~g~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~pg~Ggk~~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtI 166 (198)
+|+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++| ++++++|||||||+++|+.+|+|||
T Consensus 116 ~I~sg~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k--~~~~~~vrLPSGe~r~i~~~c~AtI 193 (276)
T 3v2d_D 116 QVVAGPDAPIQVGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGR--EGDYVILRLPSGELRKVHGECYATV 193 (276)
T ss_dssp EECBSTTCCSSTTCEEEGGGSCTTCEEESEESSTTSCEEESCSTTCCEEEEEE--ETTEEEEECTTSCEEEEETTCEEEE
T ss_pred EEEeCCCCCCCCCCeehhhhCCCCCEEEEEEecCCCCceEEEeCCCeEEEEEe--cCCEEEEECCCCCeEEEcccCeEEE
Confidence 99999999999999999999999999999999999999999999999999999 6999999999999999999999999
Q ss_pred EEeeCCCcCceeeeccchhhhcc
Q 037430 167 GQVAGGGRTEKPLLKAGNAYHKF 189 (198)
Q Consensus 167 G~vsn~~~~~~~~gKAG~~r~~~ 189 (198)
|+|||.+|.+++|+|||++||+.
T Consensus 194 G~Vsn~~~~~~~lgKAGr~rw~g 216 (276)
T 3v2d_D 194 GAVGNADHKNIVLGKAGRSRWLG 216 (276)
T ss_dssp SCBSCGGGGGCCCCSHHHHHHTT
T ss_pred EeecCcchhhcEeccCcccccCC
Confidence 99999999999999999999996
No 9
>3bbo_E Ribosomal protein L2; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=9.1e-69 Score=462.67 Aligned_cols=172 Identities=29% Similarity=0.508 Sum_probs=167.8
Q ss_pred CCCCcceeeccccccC--ceeEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceEEEEEeccCCCcccEE
Q 037430 11 GAGSVFKSHTHHRKGP--AQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFV 88 (198)
Q Consensus 11 Gr~~~~R~~~~~r~g~--~~yr~Idf~r~~~~~~~~V~~I~yDP~Rsa~Ialv~~~~g~~~~~~~~yila~eg~~~Gd~I 88 (198)
||+++|||+++||+|+ ++||+|||+|++.+++++|++|||||||+|+||||.|.|| +++||||||||++||+|
T Consensus 38 GRNn~Grit~rhrGGGhKr~yR~IDf~r~~~~i~g~V~~IeyDPnRsA~IAlv~y~dg-----~k~yIlAp~gl~~Gd~I 112 (269)
T 3bbo_E 38 GRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTI 112 (269)
T ss_dssp SCSCCSSCCCSCCCCCSCCCCCCCCCSCCCCSCCCCCCCCCCCSSSCSCCCCCCCSSC-----CCCCCCCCSSCSSCCCC
T ss_pred ccCCCCCEEEEecCCccccccceeeecccCCCccEEEEEEEECCCCCeeEEEEEeCCC-----CEEEEEchhhcccccEE
Confidence 7889999999999998 4899999999988899999999999999999999999999 57899999999999999
Q ss_pred EEcCCcccccCCcccCcCCCCCCcceeeeeecCCCceEEecCCCeEEEEeecCCCCEEEEEcCCCcEEEEcCCCceeEEE
Q 037430 89 YCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQ 168 (198)
Q Consensus 89 ~~g~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~pg~Ggk~~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~ 168 (198)
+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++| |+++++|||||||+|+|+++|+||||+
T Consensus 113 ~sg~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k--e~~~~~vrLPSGe~r~v~~~c~AtIG~ 190 (269)
T 3bbo_E 113 VSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAK--EGKSATLKLPSGEVRLISKNCSATVGQ 190 (269)
T ss_dssp CCSSSCCCSSCSCEEGGGCSSCSSCCCCCSSSSCCCSSCCTTTCCCBCCSS--CSTTCCCBCSTTCBCCCCSSCEECSCC
T ss_pred EECCCCCCCcCCEeEeccCCCCCEEEeEeccCCCCceEEeeCCCEEEEEEe--cCCEEEEECCCCCEEEEchhhheeEee
Confidence 999999999999999999999999999999999999999999999999999 799999999999999999999999999
Q ss_pred eeCCCcCceeeeccchhhhcc
Q 037430 169 VAGGGRTEKPLLKAGNAYHKF 189 (198)
Q Consensus 169 vsn~~~~~~~~gKAG~~r~~~ 189 (198)
|||.+|.+++|+|||++||++
T Consensus 191 Vsn~~~~~~~lgKAGr~rw~g 211 (269)
T 3bbo_E 191 VGNVGVNQKRLGRAGSKRWLG 211 (269)
T ss_dssp CCCSHHHHSCCCSSSSSSTTT
T ss_pred ecCchhhhcchhhhhhcccCC
Confidence 999999999999999999998
No 10
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=100.00 E-value=3.8e-61 Score=380.77 Aligned_cols=137 Identities=34% Similarity=0.586 Sum_probs=133.0
Q ss_pred eeEeeecccccCCceeEEEEEEeCCCCccceEEEEecCCCccCceEEEEEeccCCCcccEEEEcCCcccccCCcccCcCC
Q 037430 28 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSI 107 (198)
Q Consensus 28 ~yr~Idf~r~~~~~~~~V~~I~yDP~Rsa~Ialv~~~~g~~~~~~~~yila~eg~~~Gd~I~~g~~~~~~~Gn~lpL~~I 107 (198)
+||+|||+|++.+++++|++|||||||||+||||.|.|| +++|||||+||++||+|++|.++++++||+|||.+|
T Consensus 1 ~yR~iDf~r~~~~i~~~V~~IeyDPnRsA~IAlv~y~dg-----~k~yIlAp~gl~~Gd~I~~g~~a~i~~GN~lpL~~i 75 (137)
T 1rl2_A 1 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAPKNLKVGMEIMSGPDADIKIGNALPLENI 75 (137)
T ss_dssp CCSCBCSSCCCTTCCEEEEEEEEEGGGTEEEEEEEETTS-----CEEEEECCTTCCTTCEECBSTTCCSCTTCEEEGGGS
T ss_pred CCceEecccccCCccEEEEEEEECCCCCEEEEEEEeCCC-----CEEEEEecccCccceEEEECCccccccCCEeehhhC
Confidence 589999999988899999999999999999999999999 589999999999999999999999999999999999
Q ss_pred CCCCcceeeeeecCCCceEEecCCCeEEEEeecCCCCEEEEEcCCCcEEEEcCCCceeEEEeeC
Q 037430 108 PEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAG 171 (198)
Q Consensus 108 P~Gt~I~nIE~~pg~Ggk~~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~vsn 171 (198)
|+||.|||||+.||+||||||||||||+|++| |+++++|||||||+|+|+++|+||||+|||
T Consensus 76 P~Gt~IhNIE~~pG~gg~laRsAGt~a~ii~k--e~~~~~vrLPSGe~r~v~~~c~AtIG~VsN 137 (137)
T 1rl2_A 76 PVGTLVHNIELKPGRGGQLVRAAGTSAQVLGK--EGKYVIVRLASGEVRMILGKCRATVGEVGN 137 (137)
T ss_dssp CTTCEEESEESSTTSCEEESSSSSCCEEEEEE--ETTEEEEECTTSCEEEEETTSEEEESCCC-
T ss_pred CCCCEEEEEEccCCCCcEEEEeCCCeEEEEEE--cCCEEEEECCCCCeEEECCcCcEEEEEccC
Confidence 99999999999999999999999999999999 699999999999999999999999999997
No 11
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=100.00 E-value=2.5e-57 Score=358.42 Aligned_cols=131 Identities=28% Similarity=0.428 Sum_probs=125.5
Q ss_pred EEEEEeCCCCccceEEEEecCCCccCceEEEEEeccCCCcccEEEEcCC-----cccccCCcccCcCCCCCCcceeeeee
Q 037430 45 VAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKK-----ATLMVGNVLPVRSIPEGAVVCNVEHH 119 (198)
Q Consensus 45 V~~I~yDP~Rsa~Ialv~~~~g~~~~~~~~yila~eg~~~Gd~I~~g~~-----~~~~~Gn~lpL~~IP~Gt~I~nIE~~ 119 (198)
|++|||||||||+||||.+ ++ +++|||||+||++||+|+++.+ +++++||+|||.+||+||.|||||+.
T Consensus 1 V~~IeyDPnRsA~IAlv~~--~~----~k~yIlAp~gl~~Gd~I~s~~~~g~~a~~i~~GN~lpL~~iP~Gt~IhNIE~~ 74 (136)
T 2ftc_B 1 VIQVRYDPCRSADIALVAG--GS----RKRWIIATENMQAGDTILNSNHIGRMAVAAREGDAHPLGALPVGTLINNVESE 74 (136)
T ss_pred CEEEEECCCCCcEEEEEEC--CC----eeEEEEeecCCcCCCEEEECCcccccccccCcCcEEEecccCCCCEEEEEecc
Confidence 6899999999999999975 42 3789999999999999999887 69999999999999999999999999
Q ss_pred cCCCceEEecCCCeEEEEeecCCCCEEEEEcCCCcEEEEcCCCceeEEEeeCCCcCceeeeccc
Q 037430 120 VGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 183 (198)
Q Consensus 120 pg~Ggk~~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~vsn~~~~~~~~gKAG 183 (198)
||+||||||||||||+|++| |+++++|||||||+|+|+.+|+||||+|||.+|.++++||||
T Consensus 75 pG~gg~laRsAGt~a~ii~k--e~~~~~vrLPSGe~r~v~~~c~AtIG~Vsn~~~~~~~lgKAG 136 (136)
T 2ftc_B 75 PGRGAQYIRAAGTCGVLLRK--VNGTAIIQLPSKRQMQVLETCVATVGRVSNVDHNKRVIGKAG 136 (136)
T ss_pred CCCCcEEEEeCCCeEEEEEe--cCCEEEEECCCCCeEEECcCCcEEEEEecChhhccceeccCC
Confidence 99999999999999999999 799999999999999999999999999999999999999998
No 12
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=78.48 E-value=5.3 Score=29.07 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=34.6
Q ss_pred ccCCceeEEEEEEeCCCCcc------ceEEEEecCCCccCceEEEEEecc--------CCCcccEEEEc
Q 037430 37 RNGYLKGVVAEIIHDPGRGA------PLARVTFRHPFRYMKQKELFIAAE--------GMYTGQFVYCG 91 (198)
Q Consensus 37 ~~~~~~~~V~~I~yDP~Rsa------~Ialv~~~~g~~~~~~~~yila~e--------g~~~Gd~I~~g 91 (198)
.+..++|.|.+|..|..++. .|.| +-.|+ ++.|=|.|+ ++.+||+|+.-
T Consensus 10 ~keVyEGEV~ei~~~~~~~~~~~~~~~itL-kT~d~-----ek~l~lg~~i~e~L~kekV~~GDVI~Id 72 (95)
T 2cqa_A 10 ETEIIEGEVVEIQIDRPATGTGSKVGKLTL-KTTEM-----ETIYDLGTKMIESLTKDKVQAGDVITID 72 (95)
T ss_dssp CCSEEEEEEEEEEEECTTSSSSSCEEEEEE-ECSSS-----EEEEEECSHHHHHHHHTTCCTTSEEEEE
T ss_pred EEEEEEEEEEEEEEeecCCCCcceEEEEEE-EecCC-----cEEEeCCHHHHHHHHHcCceeCCEEEEE
Confidence 35568999999998777543 3333 33344 577877776 99999999864
No 13
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=35.71 E-value=62 Score=23.94 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=32.9
Q ss_pred ceEEec--CCCeEEEEeecCCCCEEEEEcCCCcEEEEcCCCceeEEEeeCC
Q 037430 124 GVLARA--SGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGG 172 (198)
Q Consensus 124 gk~~Rs--AGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~vsn~ 172 (198)
|++.+. .|..+++..- |+..++|+|++..--.+ +.+.=+||.|.+.
T Consensus 29 GkV~~~~~~g~~~~l~s~--Dg~~Vtv~l~~p~~~~l-~~~vEViG~V~~~ 76 (121)
T 3kdf_A 29 GRLEKIHPTGKMFILSDG--EGKNGTIELMEPLDEEI-SGIVEVVGRVTAK 76 (121)
T ss_dssp EEEEEECTTSSEEEEECT--TSCEEEEECSSCCSSCC-CSEEEEEEEECTT
T ss_pred EEEEEEcCCCCEEEEEeC--CCCEEEEEeCCCCCccc-CcEEEEEEEECCC
Confidence 555544 6888888877 68999999998321122 4588899999875
No 14
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=32.61 E-value=71 Score=24.39 Aligned_cols=44 Identities=18% Similarity=0.362 Sum_probs=33.3
Q ss_pred ceEEec--CCCeEEEEeecCCCCEEEEEcCCC--cEEEEcCCCceeEEEeeCC
Q 037430 124 GVLARA--SGDYAVIISHNPDNDTTRVKLPSG--AKKIIPSGCRAMIGQVAGG 172 (198)
Q Consensus 124 gk~~Rs--AGt~a~Ii~k~~~~~~~~vkLPSG--e~r~i~~~c~AtIG~vsn~ 172 (198)
|++.+. .|..+++..- ++..++|+|++. +. .....=+||.|.+.
T Consensus 50 GkV~~~~~~G~~~~l~s~--Dg~~VtV~l~~pL~~~---~~~~VEViG~V~~~ 97 (142)
T 2pi2_E 50 GRLEKIHPTGKMFILSDG--EGKNGTIELMEPLDEE---ISGIVEVVGRVTAK 97 (142)
T ss_dssp EEEEEECTTSSEEEEECT--TSCEEEEECSSCCSSC---CCSEEEEEEEECTT
T ss_pred EEEeEEcCCCCEEEEEeC--CCcEEEEEeCCCCCcc---CCCEEEEEEEECCC
Confidence 666666 7888887776 688999999873 22 36688899999774
No 15
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=29.98 E-value=47 Score=22.45 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=20.4
Q ss_pred cCCceeEEEEEEeCCCCccceEEEEecCC
Q 037430 38 NGYLKGVVAEIIHDPGRGAPLARVTFRHP 66 (198)
Q Consensus 38 ~~~~~~~V~~I~yDP~Rsa~Ialv~~~~g 66 (198)
....+++|.+|- -++++..|.|.||
T Consensus 24 ~~yYparI~Si~----s~~~~Y~V~fKdg 48 (66)
T 2l8d_A 24 VLYYEVQVTSYD----DASHLYTVKYKDG 48 (66)
T ss_dssp SCEEEEEEEEEE----TTTTEEEEEETTS
T ss_pred ccceEEEEEEec----cCCceEEEEecCC
Confidence 345678898877 6789999999997
No 16
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=28.14 E-value=98 Score=24.31 Aligned_cols=56 Identities=14% Similarity=0.225 Sum_probs=32.3
Q ss_pred ccccCCcccCcCCCCCCcceeeee-ecCCCceEEecCCCeEEEEeec-CCCCEEEEEcCCCcEEEE
Q 037430 95 TLMVGNVLPVRSIPEGAVVCNVEH-HVGDRGVLARASGDYAVIISHN-PDNDTTRVKLPSGAKKII 158 (198)
Q Consensus 95 ~~~~Gn~lpL~~IP~Gt~I~nIE~-~pg~Ggk~~RsAGt~a~Ii~k~-~~~~~~~vkLPSGe~r~i 158 (198)
.++.|+.+-+..-| ..|-.++. .||++|. +++.+..++ .++...--..||++....
T Consensus 33 dlrkG~~I~idG~P--~~Vve~~~~KpGKhG~------A~vr~k~knl~TGk~~E~tf~s~~kve~ 90 (167)
T 3hks_A 33 NIRKGGHIVIKNRP--CKVVEVSTSKTGKHGH------AKCHFVAIDIFTAKKLEDIVPSSHNCDV 90 (167)
T ss_dssp GCCTTSEEEETTEE--EEEEEEEEECSSTTCC------CEEEEEEEETTTCCEEEEEEETTSEEEE
T ss_pred HccCCCEEEECCEE--EEEEEEEEeCCCCCCc------eEEEEEEEEcCCCCEEEEEEcCCCEEEe
Confidence 46667766676666 45533433 7888431 455555554 345555566677766543
No 17
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.59 E-value=8.5 Score=28.42 Aligned_cols=62 Identities=19% Similarity=0.127 Sum_probs=33.4
Q ss_pred eeEEEEEEeCCCCccceEEEEecCCCccCceEEEEEeccCCCccc-EEEEcCCcccccCCcccCcCCCCCCc
Q 037430 42 KGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQ-FVYCGKKATLMVGNVLPVRSIPEGAV 112 (198)
Q Consensus 42 ~~~V~~I~yDP~Rsa~Ialv~~~~g~~~~~~~~yila~eg~~~Gd-~I~~g~~~~~~~Gn~lpL~~IP~Gt~ 112 (198)
-|.|.+++|+| .+ |+|.|.|..... =||+-+...... .+.-.. ........+-|+.+|.||.
T Consensus 37 GG~V~~v~~~~-~~---AvItF~d~~va~----rVL~k~~H~L~~~~LsV~P-~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 37 GGPVLSWQRLG-CG---GVLTFREPADAE----RVLAQADHELHGAQLSLRP-APPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp CCCEEEEEEET-TE---EEEEESSHHHHH----HHHTCSCCBSSSSBCEEEE-CCCCCCCCCCCCSCCCCCC
T ss_pred CceeeEEEEcC-Cc---EEEEEcChHHHH----HHhcCCcceecCeEEEEEc-CCCCCcceEeeecCCCCCC
Confidence 38999999999 44 577777742100 011111111111 111000 1335567889999999985
No 18
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1
Probab=27.35 E-value=60 Score=22.76 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=28.5
Q ss_pred EEeccCCCcccEEEEcCCcccccCCcccCcCCCCC-Ccceeeeee
Q 037430 76 FIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEG-AVVCNVEHH 119 (198)
Q Consensus 76 ila~eg~~~Gd~I~~g~~~~~~~Gn~lpL~~IP~G-t~I~nIE~~ 119 (198)
--|-.+|++|+........+..-|+.-.-..||.| +.++.||+.
T Consensus 66 e~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~~~~l~f~vel~ 110 (113)
T 1yat_A 66 DVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110 (113)
T ss_dssp HHHGGGCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEE
T ss_pred HHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCCCCeEEEEEEEE
Confidence 34568999999987655555555553322347776 567777764
No 19
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=27.34 E-value=50 Score=22.40 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=20.5
Q ss_pred cCCceeEEEEEEeCCCCccceEEEEecCC
Q 037430 38 NGYLKGVVAEIIHDPGRGAPLARVTFRHP 66 (198)
Q Consensus 38 ~~~~~~~V~~I~yDP~Rsa~Ialv~~~~g 66 (198)
...++++|.+|- -++++.+|.|.||
T Consensus 27 ~~yYparItSit----s~~~~Y~VkfKdg 51 (68)
T 2dig_A 27 SLYYEVEILSHD----STSQLYTVKYKDG 51 (68)
T ss_dssp CCEEEEEEEEEE----TTTTEEEEECTTS
T ss_pred ccceEEEEEEec----cCCceEEEEecCC
Confidence 345688999887 6789999999997
No 20
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=26.21 E-value=1.5e+02 Score=23.47 Aligned_cols=61 Identities=7% Similarity=0.001 Sum_probs=45.3
Q ss_pred cCcCCCCCCcceeeeeecCCCceEEecCCCeEEEEeecCCCCEEEEEcCCCcEEEEcCCCceeEEEe
Q 037430 103 PVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQV 169 (198)
Q Consensus 103 pL~~IP~Gt~I~nIE~~pg~Ggk~~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~v 169 (198)
-.-.++.||.++.++. +|.+..=.++.=..|... ...+.|.=-.||+|.+.+-|-.|+=-|
T Consensus 92 ~~~~lkkGt~L~lvpa---eG~~V~~i~~~G~rV~kg---d~lA~i~T~KGEVR~i~spv~G~Vv~v 152 (169)
T 3d4r_A 92 TLTYLKAGTKLISVPA---EGYKVYPIMDFGFRVLKG---YRLATLESKKGDLRYVNSPVSGTVIFM 152 (169)
T ss_dssp EEEEECTTCBCEEEEE---CSSEEEECCCCSEEECTT---CEEEEEECTTCCEEEEECSSSEEEEEE
T ss_pred EEEEEcCCCEEEEEEe---CceEEEEEcCcCcEeccC---CeEEEEEecCceEEEecCCCcEEEEEE
Confidence 4556889999988874 366666566555555444 568888889999999999998887543
No 21
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=25.90 E-value=1e+02 Score=23.17 Aligned_cols=56 Identities=11% Similarity=0.165 Sum_probs=26.5
Q ss_pred ccccCCcccCcCCCCCCcceeee-eecCCCceEEecCCCeEEEEeec-CCCCEEEEEcCCCcEEEE
Q 037430 95 TLMVGNVLPVRSIPEGAVVCNVE-HHVGDRGVLARASGDYAVIISHN-PDNDTTRVKLPSGAKKII 158 (198)
Q Consensus 95 ~~~~Gn~lpL~~IP~Gt~I~nIE-~~pg~Ggk~~RsAGt~a~Ii~k~-~~~~~~~vkLPSGe~r~i 158 (198)
.++.|+.+-+..-| ..|-.++ ..||+||. ++..+..++ .++...--..||++....
T Consensus 11 ~lrkG~~i~~~g~p--~~Vve~~~~KpGKgG~------A~vr~k~knl~TG~~~e~tf~s~~kve~ 68 (138)
T 3cpf_A 11 ALRKNGFVVLKGRP--CKIVEMSTSKTGKHGH------AKVHLVGIDIFTGKKYEDICPSTHNMDV 68 (138)
T ss_dssp GCCTTSEEEETTEE--EEEEEEEEECC----C------CEEEEEEEETTTCCEEEEEEETTSEEEE
T ss_pred HCcCCCEEEECCEE--EEEEEEEeccCCCCcc------EEEEEEEEECCCCCEEEEEeCCCCEEEe
Confidence 34445544444444 3333332 46787642 455555554 345555556677766543
No 22
>3tzg_A Hypothetical protein BVU_2266; beta barrel, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; 2.80A {Bacteroides vulgatus}
Probab=25.53 E-value=1.6e+02 Score=23.43 Aligned_cols=56 Identities=16% Similarity=0.284 Sum_probs=34.1
Q ss_pred CceeEEEEEEeCCCCccceEEEEecCCCccCceEEEEEeccCCCcccEEEEcCCcccccCCcccCcCCCCCCcceeeeee
Q 037430 40 YLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHH 119 (198)
Q Consensus 40 ~~~~~V~~I~yDP~Rsa~Ialv~~~~g~~~~~~~~yila~eg~~~Gd~I~~g~~~~~~~Gn~lpL~~IP~Gt~I~nIE~~ 119 (198)
..+..|+.+|||..- . +++|.|. --+| .||.|..|.-.- +..|...|||.+.
T Consensus 18 geeeqvlkleydrdg--k--iikygdt-----pvry--------egdqitigqmnc-----------lntgnklcnvtfq 69 (252)
T 3tzg_A 18 GEEEQVLKLEYDRDG--K--IIKYGDT-----PVRY--------EGDQITIGQMNC-----------LNTGNKLCNVTFQ 69 (252)
T ss_dssp TTBCCEEEEEECTTS--C--EEEETTE-----EEEE--------ETTEEEECCCC-----------------CEEEEEEE
T ss_pred cchhhheeeeecCCC--c--eEeeCCc-----ccee--------cCCeeeEeeeec-----------cccCCceeEEEEE
Confidence 345789999998642 3 4566664 2344 577777654333 3456678999999
Q ss_pred cCCC
Q 037430 120 VGDR 123 (198)
Q Consensus 120 pg~G 123 (198)
-|+|
T Consensus 70 igkg 73 (252)
T 3tzg_A 70 IGKG 73 (252)
T ss_dssp EETT
T ss_pred ecCC
Confidence 9988
No 23
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}
Probab=23.71 E-value=83 Score=22.45 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=30.2
Q ss_pred EEeccCCCcccEEEEcCCcccccCCcccCcCCCCC-Ccceeeeee
Q 037430 76 FIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEG-AVVCNVEHH 119 (198)
Q Consensus 76 ila~eg~~~Gd~I~~g~~~~~~~Gn~lpL~~IP~G-t~I~nIE~~ 119 (198)
--|-.+|++|+........++.-|+.- ...||.+ +.++.||+.
T Consensus 76 e~~l~gm~~Ge~~~~~ip~~~aYG~~g-~~~Ip~~~~l~f~vel~ 119 (125)
T 4dip_A 76 DQGLKGMCVGEKRKLIIPPALGYGKEG-KGKIPPESTLIFNIDLL 119 (125)
T ss_dssp HHHSTTCCTTCEEEEEECGGGTTTTTC-BTTBCTTCCEEEEEEEE
T ss_pred HHHHhCCCCCCEEEEEEChHHhcCCCC-CCCCCCCCeEEEEEEEE
Confidence 346679999999887655555555543 2378888 778888875
No 24
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=23.60 E-value=98 Score=24.46 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=29.8
Q ss_pred ccccCCcccCcCCCCCCcceeee-eecCCCceEEecCCCeEEEEeec-CCCCEEEEEcCCCcEEEEcC
Q 037430 95 TLMVGNVLPVRSIPEGAVVCNVE-HHVGDRGVLARASGDYAVIISHN-PDNDTTRVKLPSGAKKIIPS 160 (198)
Q Consensus 95 ~~~~Gn~lpL~~IP~Gt~I~nIE-~~pg~Ggk~~RsAGt~a~Ii~k~-~~~~~~~vkLPSGe~r~i~~ 160 (198)
.++.|+.+-+..-| ..|-.++ ..||+|| ++++.+..++ ..+...--..||++....+.
T Consensus 35 dlrkG~~I~idG~p--~~Vve~~~~KpGKgG------~A~vr~k~kni~TG~k~E~tf~s~~kve~~~ 94 (174)
T 1x6o_A 35 ALKKGGYVCINGRP--CKVIDLSVSKTGKHG------HAKVSIVATDIFTGNRLEDQAPSTHNVEVPF 94 (174)
T ss_dssp GCCTTCEEEETTEE--EEEEEEEECCC----------CCEEEEEEEETTTCCEEEEEEETTSEEEEEC
T ss_pred HccCCCEEEECCEE--EEEEEEEecCCCCCC------ceEEEEEEEECCCCCEEEEEeCCCCEEEeeE
Confidence 45555555555555 3443333 4678764 2566666665 44566666777777665443
No 25
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=22.51 E-value=1.3e+02 Score=23.50 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=32.1
Q ss_pred ccccCCcccCcCCCCCCcceeeee-ecCC-CceEEecCCCeEEEEeec-CCCCEEEEEcCCCcEEEEc
Q 037430 95 TLMVGNVLPVRSIPEGAVVCNVEH-HVGD-RGVLARASGDYAVIISHN-PDNDTTRVKLPSGAKKIIP 159 (198)
Q Consensus 95 ~~~~Gn~lpL~~IP~Gt~I~nIE~-~pg~-Ggk~~RsAGt~a~Ii~k~-~~~~~~~vkLPSGe~r~i~ 159 (198)
.++.|+.+-+..-| ..|-.++. .||+ |+ +++.+..++ .++...--..||++....+
T Consensus 35 dlrkG~~I~idG~p--~~Vve~~~~KpGKHG~-------A~vr~k~knl~TG~k~E~tf~s~~kve~~ 93 (167)
T 3er0_A 35 ALRKNGFVVIKSRP--CKIVDMSTSKTGKHGH-------AKVHLVAIDIFTGKKLEDLSPSTHNMEVP 93 (167)
T ss_dssp TCCTTCEEEETTEE--EEEEEEEEECCSSSSC-------CEEEEEEEESSSCCCEEEEEESSSEEEEC
T ss_pred HccCCCEEEECCEE--EEEEEEEEeCCCCcCc-------eEEEEEEEEcCCCCEEEEEEcCCCccccc
Confidence 45556655666555 44544433 6888 76 444454444 3455666677887766543
No 26
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=20.57 E-value=1.2e+02 Score=20.64 Aligned_cols=44 Identities=25% Similarity=0.150 Sum_probs=26.5
Q ss_pred EEeccCCCcccEEEEcCCcccccCCcccCcCCCCC-Ccceeeeee
Q 037430 76 FIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEG-AVVCNVEHH 119 (198)
Q Consensus 76 ila~eg~~~Gd~I~~g~~~~~~~Gn~lpL~~IP~G-t~I~nIE~~ 119 (198)
--|-.+|++|+........+..-|+.-.-..||.| +.++.||+.
T Consensus 50 ~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~ 94 (102)
T 2pbc_A 50 DQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELL 94 (102)
T ss_dssp HTTSTTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEE
T ss_pred HHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEE
Confidence 34568999999987654444444543222346665 456667654
No 27
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}
Probab=20.25 E-value=97 Score=22.58 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=26.0
Q ss_pred eccCCCcccEEEEcCCcccccCCcccCcCCCCC-Ccceeeeee
Q 037430 78 AAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEG-AVVCNVEHH 119 (198)
Q Consensus 78 a~eg~~~Gd~I~~g~~~~~~~Gn~lpL~~IP~G-t~I~nIE~~ 119 (198)
|-.+|++|+.........+.-|+.-.-..||.| +.++.||+.
T Consensus 88 aL~gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~ 130 (134)
T 3b7x_A 88 GLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELL 130 (134)
T ss_dssp HHHTCEETCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEE
T ss_pred HHhCCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEE
Confidence 446888999887654444444543222347776 667788764
No 28
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=20.14 E-value=1e+02 Score=22.36 Aligned_cols=46 Identities=13% Similarity=0.322 Sum_probs=33.2
Q ss_pred ceEEecCCCeEEEEeecCCCCEEEEEcCCCcEEEEcCCCceeEEEeeCC
Q 037430 124 GVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGG 172 (198)
Q Consensus 124 gk~~RsAGt~a~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~vsn~ 172 (198)
|+.....|..+++..- ++..++|+|++... .-...+.=+||+|++.
T Consensus 25 GkV~~~~g~~~~l~s~--d~~~Vtv~l~~~~~-~~~~~~vEViG~V~~~ 70 (114)
T 4gop_A 25 GKVHKVTGNTLLMQTS--DLGNVEIAMTPDSD-VSSSTFVEVTGKVSDA 70 (114)
T ss_dssp EEEEEEETTEEEEECT--TSCEEEEECCSSCC-GGGCSEEEEEEEECTT
T ss_pred EEEeeeCCCEEEEEeC--CCCEEEEEeCCCCC-cccCcEEEEEEEEcCC
Confidence 6666667777777665 68899999987543 1146788899998865
Done!