RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 037430
(198 letters)
>d1vqoa1 b.34.5.3 (A:91-237) C-terminal domain of ribosomal protein
L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 147
Score = 99.5 bits (248), Expect = 1e-27
Identities = 53/100 (53%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Query: 99 GNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 158
GN LP+ IPEG VCNVE GD G ARASG A +++H D + VKLPSG K +
Sbjct: 1 GNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRNVAVVKLPSGEMKRL 58
Query: 159 PSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPK 198
CRA IG VAGGGRT+KP +KAGN +HK + + WP
Sbjct: 59 DPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPN 98
>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein
L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 90
Score = 86.3 bits (214), Expect = 3e-23
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 2 GRVIRAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLAR 60
GR I+ QR+G G S F++ +H K + R ++ G+ + G V +I HDP R AP+A
Sbjct: 1 GRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGD---VIAGTVVDIEHDPARSAPVAA 57
Query: 61 VTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATL 96
V F + L +A EG+ G + G A +
Sbjct: 58 VEFED-----GDRRLILAPEGVGVGDELQVGVSAEI 88
>d1rl2a1 b.34.5.3 (A:126-195) C-terminal domain of ribosomal protein
L2 {Bacillus stearothermophilus [TaxId: 1422]}
Length = 70
Score = 79.8 bits (197), Expect = 8e-21
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 99 GNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 158
GN LP+ +IP G +V N+E G G L RA+G A ++ + V+L SG ++I
Sbjct: 1 GNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGK--EGKYVIVRLASGEVRMI 58
Query: 159 PSGCRAMIGQV 169
CRA +G+V
Sbjct: 59 LGKCRATVGEV 69
>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein
L2 {Thermus thermophilus [TaxId: 274]}
Length = 147
Score = 80.7 bits (199), Expect = 3e-20
Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 98 VGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKI 157
VGN LP+R IP G VV VE LARA+G A I + D ++LPSG +
Sbjct: 1 VGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGR--EGDYVILRLPSGELRK 58
Query: 158 IPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 188
+ C A +G V L KAG +
Sbjct: 59 VHGECYATVGAVGNADHKNIVLGKAGRSRWL 89
>d2qamc1 b.34.5.3 (C:125-269) C-terminal domain of ribosomal protein
L2 {Escherichia coli [TaxId: 562]}
Length = 145
Score = 73.0 bits (179), Expect = 2e-17
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 99 GNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 158
GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + +
Sbjct: 2 GNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKV 59
Query: 159 PSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPK 198
+ CRA +G+V + L KAG A R P
Sbjct: 60 EADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPT 94
>d1rl2a2 b.40.4.5 (A:60-125) N-terminal domain of ribosomal
protein L2 {Bacillus stearothermophilus [TaxId: 1422]}
Length = 66
Score = 47.0 bits (112), Expect = 2e-08
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 28 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQF 87
Q+R +DF + G VA I +DP R A +A + + +K IA + + G
Sbjct: 1 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYAD-----GEKRYIIAPKNLKVGME 55
Query: 88 VYCGKKATLMV 98
+ G A + +
Sbjct: 56 IMSGPDADIKI 66
>d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal
protein L2 {Escherichia coli [TaxId: 562]}
Length = 64
Score = 45.8 bits (109), Expect = 6e-08
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 29 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFV 88
+R +DF + VV + +DP R A +A V ++ ++ +A +G+ G +
Sbjct: 1 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKD-----GERRYILAPKGLKAGDQI 55
Query: 89 YCGKKA 94
G A
Sbjct: 56 QSGVDA 61
>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein
L2 {Thermus thermophilus [TaxId: 274]}
Length = 125
Score = 35.6 bits (82), Expect = 0.001
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 18 SHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELF 76
+R +DF + + VA I +DP R A +A + + +K
Sbjct: 50 VRFRGGGHKRLYRIIDFKRWDKVGIPAKVAAIEYDPNRSARIALLHYVD-----GEKRYI 104
Query: 77 IAAEGMYTGQFVYCGKKA 94
IA +G+ GQ V G A
Sbjct: 105 IAPDGLQVGQQVVAGPDA 122
>d2gk3a1 c.23.16.9 (A:8-253) Putative cytoplasmic protein STM3548
{Salmonella typhimurium [TaxId: 90371]}
Length = 246
Score = 26.7 bits (58), Expect = 1.9
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 12 AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVA----EIIHDPGRGAP 57
G + H H KG F S + E +L + +I + P
Sbjct: 6 IGESWHIHMIHSKGYDSFTSSKYEEGATWLLECLRKGGVDIDYMPAHTVQ 55
>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 163
Score = 26.4 bits (58), Expect = 2.0
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 104 VRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 158
+ + AVV N+ H D + +Y I N R+ LP+G KII
Sbjct: 97 LLKMKNNAVVGNIGHF--DDEIQVNELFNYKGIHIENVKPQVDRITLPNG-NKII 148
>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris
[TaxId: 2026]}
Length = 279
Score = 24.7 bits (52), Expect = 7.9
Identities = 7/44 (15%), Positives = 12/44 (27%)
Query: 114 CNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKI 157
G +G ++ S R + + A KI
Sbjct: 216 STYASLSGTSMATPHVAGVAGLLASQGRSASNIRAAIENTADKI 259
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.430
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 770,459
Number of extensions: 35146
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 13
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.1 bits)