Query 037431
Match_columns 93
No_of_seqs 143 out of 1029
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 12:10:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037431.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037431hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00479 G6PD_N: Glucose-6-pho 99.9 1.4E-23 3E-28 152.9 6.9 68 12-80 1-68 (183)
2 PLN02333 glucose-6-phosphate 1 99.9 8E-22 1.7E-26 164.9 9.4 73 5-77 114-186 (604)
3 PLN02640 glucose-6-phosphate 1 99.9 1.2E-21 2.6E-26 163.1 9.5 67 5-71 85-151 (573)
4 PRK05722 glucose-6-phosphate 1 99.9 2.6E-21 5.7E-26 158.7 9.8 67 4-70 5-71 (495)
5 PRK12854 glucose-6-phosphate 1 99.9 2.7E-21 6E-26 158.4 9.7 67 4-70 7-73 (484)
6 COG0364 Zwf Glucose-6-phosphat 99.8 3E-21 6.6E-26 158.0 8.8 65 5-70 4-68 (483)
7 PRK12853 glucose-6-phosphate 1 99.8 3.8E-21 8.3E-26 157.4 8.7 66 5-70 5-70 (482)
8 TIGR00871 zwf glucose-6-phosph 99.8 3.5E-21 7.6E-26 157.6 8.4 64 7-70 1-64 (482)
9 PLN02539 glucose-6-phosphate 1 99.8 6.8E-21 1.5E-25 156.3 8.7 66 4-69 13-79 (491)
10 PTZ00309 glucose-6-phosphate 1 99.8 5E-20 1.1E-24 152.7 8.4 62 6-67 52-115 (542)
11 KOG0563 Glucose-6-phosphate 1- 99.8 5.8E-20 1.2E-24 150.2 7.3 77 4-81 13-89 (499)
12 PF13905 Thioredoxin_8: Thiore 90.2 2.4 5.1E-05 26.1 6.7 56 8-64 2-57 (95)
13 PF13460 NAD_binding_10: NADH( 90.0 0.7 1.5E-05 31.5 4.4 36 11-55 1-36 (183)
14 PF05368 NmrA: NmrA-like famil 88.9 2.8 6E-05 29.9 7.0 32 11-51 1-32 (233)
15 cd03011 TlpA_like_ScsD_MtbDsbE 87.6 2.9 6.4E-05 26.7 6.0 51 7-63 20-70 (123)
16 PLN00141 Tic62-NAD(P)-related 85.8 0.78 1.7E-05 33.3 2.7 39 4-51 13-51 (251)
17 PRK07454 short chain dehydroge 84.6 1.3 2.8E-05 31.4 3.3 44 9-61 7-50 (241)
18 PRK05653 fabG 3-ketoacyl-(acyl 79.3 2.6 5.6E-05 29.4 3.2 44 9-61 6-49 (246)
19 PRK07326 short chain dehydroge 79.1 1.6 3.5E-05 30.7 2.1 44 9-61 7-50 (237)
20 COG3311 AlpA Predicted transcr 78.7 4.7 0.0001 25.7 4.0 40 26-66 27-66 (70)
21 PRK07774 short chain dehydroge 78.7 2.7 5.9E-05 29.8 3.2 44 10-62 8-51 (250)
22 PRK07677 short chain dehydroge 77.2 3.1 6.8E-05 29.8 3.2 43 10-61 3-45 (252)
23 PRK06125 short chain dehydroge 76.8 9.3 0.0002 27.4 5.6 44 9-61 8-51 (259)
24 PF02670 DXP_reductoisom: 1-de 76.4 6.5 0.00014 27.5 4.6 50 11-68 1-50 (129)
25 PRK12429 3-hydroxybutyrate deh 74.5 3.8 8.1E-05 29.0 3.0 44 9-61 5-48 (258)
26 cd01836 FeeA_FeeB_like SGNH_hy 74.4 19 0.00042 24.6 6.5 54 8-65 40-97 (191)
27 TIGR01963 PHB_DH 3-hydroxybuty 73.8 3 6.5E-05 29.5 2.4 42 10-60 3-44 (255)
28 PRK05650 short chain dehydroge 73.2 5.7 0.00012 28.8 3.8 42 10-60 2-43 (270)
29 PF00106 adh_short: short chai 72.3 25 0.00054 23.2 6.9 33 10-50 2-34 (167)
30 PRK07523 gluconate 5-dehydroge 72.3 3.7 8.1E-05 29.4 2.6 45 9-62 11-55 (255)
31 PRK13394 3-hydroxybutyrate deh 71.8 4.9 0.00011 28.6 3.1 45 9-62 8-52 (262)
32 PRK12828 short chain dehydroge 71.2 5.1 0.00011 27.8 3.0 39 9-56 8-46 (239)
33 PRK05866 short chain dehydroge 70.0 8.7 0.00019 28.8 4.2 34 9-51 41-74 (293)
34 PRK06057 short chain dehydroge 69.3 4.7 0.0001 28.9 2.5 37 8-53 7-43 (255)
35 PRK06914 short chain dehydroge 69.3 5.9 0.00013 28.7 3.1 41 10-59 5-45 (280)
36 cd03012 TlpA_like_DipZ_like Tl 68.7 29 0.00063 22.5 6.1 44 8-52 24-67 (126)
37 PRK07231 fabG 3-ketoacyl-(acyl 67.9 5.7 0.00012 28.0 2.7 43 9-60 6-48 (251)
38 TIGR03649 ergot_EASG ergot alk 67.3 4 8.7E-05 29.9 1.9 33 10-51 1-33 (285)
39 TIGR01764 excise DNA binding d 67.2 5.9 0.00013 21.2 2.2 33 27-62 16-48 (49)
40 TIGR02415 23BDH acetoin reduct 67.1 8.2 0.00018 27.3 3.4 34 10-52 2-35 (254)
41 PF08659 KR: KR domain; Inter 67.0 39 0.00085 23.6 6.8 46 10-63 2-50 (181)
42 TIGR00715 precor6x_red precorr 65.7 9.8 0.00021 29.1 3.8 19 10-30 2-20 (256)
43 PRK07035 short chain dehydroge 65.5 29 0.00062 24.6 6.0 43 10-61 10-52 (252)
44 PRK09186 flagellin modificatio 64.8 13 0.00027 26.4 4.0 43 10-61 6-48 (256)
45 CHL00194 ycf39 Ycf39; Provisio 64.4 3.1 6.7E-05 31.4 0.8 33 10-51 2-34 (317)
46 PRK07060 short chain dehydroge 64.0 5.3 0.00012 28.1 1.9 34 9-51 10-43 (245)
47 PRK08213 gluconate 5-dehydroge 62.8 9.1 0.0002 27.4 3.0 35 8-51 12-46 (259)
48 PRK06124 gluconate 5-dehydroge 62.8 7.8 0.00017 27.6 2.6 34 9-51 12-45 (256)
49 PRK08945 putative oxoacyl-(acy 62.5 7.2 0.00016 27.7 2.4 44 9-61 13-56 (247)
50 PRK08643 acetoin reductase; Va 62.5 11 0.00024 26.8 3.4 43 10-61 4-46 (256)
51 PRK07074 short chain dehydroge 62.2 7.6 0.00017 27.7 2.5 41 10-59 4-44 (257)
52 cd02966 TlpA_like_family TlpA- 61.5 32 0.00069 20.4 7.1 56 7-63 19-74 (116)
53 cd01844 SGNH_hydrolase_like_6 61.3 49 0.0011 22.5 6.9 53 8-65 31-84 (177)
54 PRK09291 short chain dehydroge 61.3 8.2 0.00018 27.4 2.5 40 10-58 4-43 (257)
55 PRK12829 short chain dehydroge 61.1 7.7 0.00017 27.6 2.3 40 9-57 12-51 (264)
56 TIGR01777 yfcH conserved hypot 60.9 5.9 0.00013 28.5 1.7 35 11-54 1-35 (292)
57 PRK06949 short chain dehydroge 60.7 8.9 0.00019 27.2 2.6 34 9-51 10-43 (258)
58 PRK05875 short chain dehydroge 60.2 8.9 0.00019 27.7 2.6 35 9-52 8-42 (276)
59 PRK07478 short chain dehydroge 60.1 9.4 0.0002 27.3 2.7 44 9-61 7-50 (254)
60 PRK07102 short chain dehydroge 60.1 10 0.00022 26.9 2.8 39 10-57 3-41 (243)
61 PRK05993 short chain dehydroge 59.5 4.5 9.8E-05 29.7 0.9 33 10-51 6-38 (277)
62 PRK08703 short chain dehydroge 58.5 12 0.00026 26.4 3.0 44 9-61 7-50 (239)
63 PRK07904 short chain dehydroge 58.5 68 0.0015 23.2 7.2 50 5-62 5-55 (253)
64 cd02969 PRX_like1 Peroxiredoxi 58.1 57 0.0012 22.3 6.7 57 6-63 24-86 (171)
65 PLN03209 translocon at the inn 58.0 13 0.00027 32.1 3.4 41 8-57 80-120 (576)
66 PRK05565 fabG 3-ketoacyl-(acyl 57.9 12 0.00026 26.2 2.8 42 10-60 7-49 (247)
67 cd03009 TryX_like_TryX_NRX Try 57.6 49 0.0011 21.4 6.2 55 7-62 18-73 (131)
68 PRK12826 3-ketoacyl-(acyl-carr 57.1 10 0.00022 26.5 2.4 35 9-52 7-41 (251)
69 PRK06181 short chain dehydroge 56.5 12 0.00026 26.8 2.7 34 10-52 3-36 (263)
70 cd02964 TryX_like_family Trypa 56.4 54 0.0012 21.4 6.4 57 6-63 16-73 (132)
71 PRK06172 short chain dehydroge 56.2 12 0.00027 26.5 2.7 43 9-60 8-50 (253)
72 PRK08017 oxidoreductase; Provi 56.1 11 0.00023 26.8 2.3 33 10-51 4-36 (256)
73 PRK09242 tropinone reductase; 56.1 12 0.00025 26.8 2.6 43 9-60 10-52 (257)
74 PRK12384 sorbitol-6-phosphate 56.0 43 0.00094 23.8 5.5 43 10-61 4-46 (259)
75 PRK08251 short chain dehydroge 55.6 13 0.00028 26.3 2.7 42 10-60 4-45 (248)
76 PRK06138 short chain dehydroge 55.5 12 0.00025 26.4 2.5 35 9-52 6-40 (252)
77 cd01078 NAD_bind_H4MPT_DH NADP 54.8 12 0.00026 26.3 2.5 35 8-51 28-62 (194)
78 PRK08177 short chain dehydroge 54.7 19 0.00041 25.3 3.5 38 10-56 3-40 (225)
79 PRK07063 short chain dehydroge 54.5 13 0.00028 26.7 2.6 45 9-62 8-52 (260)
80 PRK07062 short chain dehydroge 54.5 15 0.00033 26.3 3.0 44 9-61 9-52 (265)
81 PRK07832 short chain dehydroge 54.4 13 0.00029 27.0 2.7 34 10-52 2-35 (272)
82 cd01839 SGNH_arylesterase_like 54.1 72 0.0016 22.2 7.2 57 8-65 41-111 (208)
83 cd04502 SGNH_hydrolase_like_7 54.1 65 0.0014 21.6 7.5 56 7-65 21-80 (171)
84 PRK07201 short chain dehydroge 53.2 17 0.00037 29.9 3.4 41 10-59 373-413 (657)
85 TIGR03206 benzo_BadH 2-hydroxy 52.9 14 0.00031 25.9 2.6 39 10-57 5-43 (250)
86 PRK07069 short chain dehydroge 52.9 18 0.00039 25.5 3.1 32 11-51 2-33 (251)
87 PRK07814 short chain dehydroge 52.7 15 0.00032 26.6 2.7 43 9-60 11-53 (263)
88 PLN02986 cinnamyl-alcohol dehy 51.9 24 0.00052 26.3 3.8 38 9-55 6-43 (322)
89 PRK07109 short chain dehydroge 51.7 18 0.0004 27.7 3.2 46 8-62 8-53 (334)
90 PRK12939 short chain dehydroge 51.3 17 0.00036 25.5 2.7 43 9-60 8-50 (250)
91 PRK07666 fabG 3-ketoacyl-(acyl 51.2 16 0.00036 25.7 2.7 43 9-60 8-50 (239)
92 PRK07775 short chain dehydroge 50.8 16 0.00035 26.7 2.7 34 10-52 12-45 (274)
93 PRK05854 short chain dehydroge 50.6 33 0.00072 25.9 4.4 45 9-62 15-59 (313)
94 PRK07825 short chain dehydroge 50.5 10 0.00022 27.5 1.5 34 9-51 6-39 (273)
95 PF13241 NAD_binding_7: Putati 50.4 13 0.00028 24.0 1.9 33 9-51 8-40 (103)
96 PLN02896 cinnamyl-alcohol dehy 50.2 24 0.00052 26.8 3.6 39 5-52 7-45 (353)
97 COG0743 Dxr 1-deoxy-D-xylulose 49.3 74 0.0016 26.4 6.4 72 10-89 3-75 (385)
98 PRK05693 short chain dehydroge 48.8 6.7 0.00015 28.5 0.4 33 10-51 3-35 (274)
99 PRK07453 protochlorophyllide o 48.5 14 0.0003 27.7 2.0 43 8-59 6-48 (322)
100 PRK06182 short chain dehydroge 48.3 7.5 0.00016 28.2 0.5 34 9-51 4-37 (273)
101 PRK09072 short chain dehydroge 48.1 16 0.00035 26.3 2.3 35 10-53 7-41 (263)
102 TIGR01746 Thioester-redct thio 47.6 36 0.00078 25.0 4.1 36 10-52 1-36 (367)
103 PRK08226 short chain dehydroge 47.6 25 0.00055 25.1 3.2 35 8-51 6-40 (263)
104 PRK10538 malonic semialdehyde 47.6 18 0.00038 25.9 2.4 33 10-51 2-34 (248)
105 PRK10675 UDP-galactose-4-epime 47.4 32 0.00069 25.6 3.8 32 10-50 2-33 (338)
106 COG3596 Predicted GTPase [Gene 47.1 23 0.00051 28.3 3.2 26 5-31 36-61 (296)
107 cd03008 TryX_like_RdCVF Trypar 47.0 98 0.0021 21.7 7.0 56 7-63 25-86 (146)
108 PRK08628 short chain dehydroge 46.9 25 0.00053 25.1 3.1 34 10-52 9-42 (258)
109 PRK09135 pteridine reductase; 46.8 23 0.00051 24.7 2.9 35 9-52 7-41 (249)
110 PRK08085 gluconate 5-dehydroge 46.5 22 0.00047 25.4 2.7 40 9-57 10-49 (254)
111 cd02968 SCO SCO (an acronym fo 46.5 78 0.0017 20.4 6.1 57 7-63 22-83 (142)
112 TIGR01179 galE UDP-glucose-4-e 45.9 18 0.00038 26.3 2.2 15 11-25 2-16 (328)
113 PRK02797 4-alpha-L-fucosyltran 45.8 95 0.0021 25.1 6.4 59 9-70 146-204 (322)
114 KOG2733 Uncharacterized membra 45.5 14 0.00029 30.9 1.7 12 8-19 5-16 (423)
115 PRK06101 short chain dehydroge 44.4 20 0.00043 25.5 2.2 33 10-51 3-35 (240)
116 PRK05867 short chain dehydroge 44.3 24 0.00051 25.2 2.6 42 10-60 11-52 (253)
117 COG1091 RfbD dTDP-4-dehydrorha 44.2 34 0.00073 26.9 3.6 35 11-55 3-37 (281)
118 TIGR03466 HpnA hopanoid-associ 44.1 17 0.00036 26.6 1.8 34 10-52 2-35 (328)
119 PRK08264 short chain dehydroge 44.1 19 0.00041 25.3 2.0 35 9-51 7-41 (238)
120 PF11313 DUF3116: Protein of u 44.1 10 0.00023 25.0 0.7 30 10-39 29-58 (85)
121 PF05741 zf-nanos: Nanos RNA b 44.1 8.9 0.00019 23.4 0.3 12 13-24 38-49 (55)
122 PRK05786 fabG 3-ketoacyl-(acyl 44.0 24 0.00052 24.6 2.6 35 9-52 6-40 (238)
123 TIGR01832 kduD 2-deoxy-D-gluco 43.9 36 0.00078 24.0 3.5 34 9-51 6-39 (248)
124 PRK06924 short chain dehydroge 43.8 23 0.0005 25.0 2.5 33 10-51 3-35 (251)
125 PRK08217 fabG 3-ketoacyl-(acyl 43.7 25 0.00054 24.6 2.6 35 9-52 6-40 (253)
126 PRK07890 short chain dehydroge 43.3 23 0.00051 25.1 2.5 44 9-61 6-49 (258)
127 PF04321 RmlD_sub_bind: RmlD s 43.2 1.3E+02 0.0028 22.6 6.6 37 10-55 2-38 (286)
128 PRK05855 short chain dehydroge 43.0 18 0.00039 28.7 2.0 44 8-60 315-358 (582)
129 PRK08277 D-mannonate oxidoredu 42.5 27 0.00059 25.3 2.8 35 8-51 10-44 (278)
130 TIGR02661 MauD methylamine deh 42.1 1.2E+02 0.0027 21.4 6.8 51 7-63 74-124 (189)
131 PRK08063 enoyl-(acyl carrier p 41.6 82 0.0018 22.1 5.1 15 9-23 5-19 (250)
132 PRK08267 short chain dehydroge 41.6 24 0.00053 25.2 2.3 34 10-52 3-36 (260)
133 PRK05884 short chain dehydroge 41.4 15 0.00032 26.2 1.2 33 10-51 2-34 (223)
134 PLN02583 cinnamoyl-CoA reducta 41.1 31 0.00067 25.7 2.9 35 8-51 6-40 (297)
135 TIGR01830 3oxo_ACP_reduc 3-oxo 41.0 31 0.00067 23.9 2.7 32 11-51 1-32 (239)
136 COG0702 Predicted nucleoside-d 41.0 41 0.00088 23.8 3.4 38 10-56 2-39 (275)
137 PRK08265 short chain dehydroge 40.7 30 0.00064 25.0 2.7 35 9-52 7-41 (261)
138 PRK06953 short chain dehydroge 40.7 27 0.0006 24.4 2.5 34 10-52 3-36 (222)
139 PRK06194 hypothetical protein; 40.4 35 0.00076 24.7 3.1 34 9-51 7-40 (287)
140 PRK05447 1-deoxy-D-xylulose 5- 40.0 91 0.002 25.7 5.6 46 10-63 3-48 (385)
141 PRK07023 short chain dehydroge 39.6 27 0.00058 24.7 2.3 33 10-51 3-35 (243)
142 PRK06179 short chain dehydroge 39.4 66 0.0014 23.1 4.3 32 10-50 6-37 (270)
143 PRK08862 short chain dehydroge 39.3 98 0.0021 22.2 5.2 44 9-61 6-49 (227)
144 PRK08219 short chain dehydroge 39.3 21 0.00045 24.6 1.7 32 10-51 5-36 (227)
145 PRK06123 short chain dehydroge 39.2 1.1E+02 0.0025 21.3 5.5 15 10-24 4-18 (248)
146 PRK08220 2,3-dihydroxybenzoate 39.0 25 0.00054 24.8 2.0 34 9-51 9-42 (252)
147 PLN02657 3,8-divinyl protochlo 39.0 23 0.00051 28.0 2.1 34 9-51 61-94 (390)
148 cd06167 LabA_like LabA_like pr 38.8 94 0.002 20.5 4.8 44 7-60 99-142 (149)
149 PRK06196 oxidoreductase; Provi 38.4 29 0.00062 26.0 2.4 35 9-52 27-61 (315)
150 COG1564 THI80 Thiamine pyropho 38.4 44 0.00095 25.3 3.3 29 6-35 90-118 (212)
151 PF07881 Fucose_iso_N1: L-fuco 38.1 1.4E+02 0.0031 22.1 5.9 59 7-67 100-162 (171)
152 PLN02240 UDP-glucose 4-epimera 37.7 56 0.0012 24.4 3.9 34 9-51 6-39 (352)
153 PRK07576 short chain dehydroge 37.6 35 0.00075 24.8 2.7 34 9-51 10-43 (264)
154 PLN02650 dihydroflavonol-4-red 37.1 54 0.0012 24.8 3.7 35 10-53 7-41 (351)
155 PRK12827 short chain dehydroge 37.0 58 0.0013 22.6 3.7 35 9-52 7-41 (249)
156 TIGR01500 sepiapter_red sepiap 36.8 95 0.0021 22.2 4.8 47 10-61 2-48 (256)
157 PRK06198 short chain dehydroge 36.7 35 0.00075 24.3 2.5 36 9-52 7-42 (260)
158 PRK08589 short chain dehydroge 36.6 43 0.00093 24.4 3.0 32 10-50 8-39 (272)
159 cd02970 PRX_like2 Peroxiredoxi 36.6 1.2E+02 0.0025 19.6 5.5 44 7-51 24-67 (149)
160 PRK07577 short chain dehydroge 36.5 31 0.00067 24.0 2.2 33 10-51 5-37 (234)
161 PRK07067 sorbitol dehydrogenas 36.5 33 0.00071 24.5 2.3 35 9-52 7-41 (257)
162 PRK12825 fabG 3-ketoacyl-(acyl 36.4 50 0.0011 22.8 3.2 17 9-25 7-23 (249)
163 PRK06180 short chain dehydroge 36.3 30 0.00066 25.2 2.2 34 9-51 5-38 (277)
164 PLN02214 cinnamoyl-CoA reducta 36.2 32 0.00069 26.3 2.4 34 9-51 11-44 (342)
165 PRK06500 short chain dehydroge 36.2 30 0.00066 24.2 2.1 34 9-51 7-40 (249)
166 PRK07806 short chain dehydroge 35.4 32 0.00069 24.3 2.1 34 9-51 7-40 (248)
167 PF01370 Epimerase: NAD depend 35.2 25 0.00054 24.3 1.5 35 11-54 1-35 (236)
168 PRK08340 glucose-1-dehydrogena 35.1 38 0.00081 24.3 2.5 34 10-52 2-35 (259)
169 TIGR01214 rmlD dTDP-4-dehydror 34.9 67 0.0014 23.2 3.8 31 11-50 2-32 (287)
170 PRK07831 short chain dehydroge 34.9 45 0.00098 23.9 2.9 45 9-62 18-63 (262)
171 PRK06935 2-deoxy-D-gluconate 3 34.9 61 0.0013 23.1 3.6 34 8-50 15-48 (258)
172 PRK07097 gluconate 5-dehydroge 34.9 45 0.00097 24.0 2.9 43 9-61 11-54 (265)
173 cd03010 TlpA_like_DsbE TlpA-li 34.9 1.2E+02 0.0027 19.3 7.2 52 7-63 25-76 (127)
174 PF06313 ACP53EA: Drosophila A 34.7 1.2E+02 0.0027 20.0 4.7 52 16-75 14-66 (93)
175 PF05930 Phage_AlpA: Prophage 34.4 7.2 0.00015 22.4 -1.2 31 27-58 18-48 (51)
176 TIGR01289 LPOR light-dependent 34.3 1.2E+02 0.0025 22.9 5.1 35 10-52 5-39 (314)
177 PRK07024 short chain dehydroge 34.1 31 0.00067 24.7 1.9 33 10-51 4-36 (257)
178 TIGR01831 fabG_rel 3-oxoacyl-( 34.0 60 0.0013 22.7 3.4 32 11-51 1-32 (239)
179 PF00308 Bac_DnaA: Bacterial d 34.0 1.2E+02 0.0026 22.1 5.1 50 10-67 36-85 (219)
180 PRK12743 oxidoreductase; Provi 33.9 1.1E+02 0.0024 21.8 4.8 33 10-51 4-36 (256)
181 PF07429 Glyco_transf_56: 4-al 33.7 1.4E+02 0.0029 24.6 5.7 59 9-70 185-243 (360)
182 PRK12824 acetoacetyl-CoA reduc 33.5 1.1E+02 0.0024 21.2 4.7 33 10-51 4-36 (245)
183 TIGR03325 BphB_TodD cis-2,3-di 33.4 37 0.0008 24.4 2.2 34 9-51 6-39 (262)
184 PF04230 PS_pyruv_trans: Polys 33.4 1.3E+02 0.0028 20.6 4.9 28 40-67 100-127 (286)
185 PLN02662 cinnamyl-alcohol dehy 33.2 61 0.0013 23.8 3.4 36 9-53 5-40 (322)
186 PRK06523 short chain dehydroge 32.7 51 0.0011 23.5 2.8 35 8-51 9-43 (260)
187 PRK12481 2-deoxy-D-gluconate 3 32.4 1.3E+02 0.0029 21.5 5.0 34 9-51 9-42 (251)
188 PRK03147 thiol-disulfide oxido 32.4 1.6E+02 0.0034 19.7 7.0 55 7-63 61-115 (173)
189 PRK08339 short chain dehydroge 32.3 41 0.00089 24.5 2.3 43 10-61 10-52 (263)
190 COG0451 WcaG Nucleoside-diphos 31.9 89 0.0019 22.6 4.0 33 11-52 3-35 (314)
191 cd02967 mauD Methylamine utili 31.9 1.3E+02 0.0028 18.6 6.6 53 7-63 21-73 (114)
192 PRK06113 7-alpha-hydroxysteroi 31.5 55 0.0012 23.3 2.9 42 9-59 12-53 (255)
193 KOG1540 Ubiquinone biosynthesi 31.3 24 0.00052 28.2 1.0 15 11-25 105-119 (296)
194 PRK05872 short chain dehydroge 31.2 1.2E+02 0.0027 22.4 4.8 34 9-51 10-43 (296)
195 cd03074 PDI_b'_Calsequestrin_C 31.1 1.6E+02 0.0034 20.7 4.9 47 22-70 3-51 (120)
196 PRK05599 hypothetical protein; 31.0 1.5E+02 0.0032 21.2 5.1 43 10-62 2-44 (246)
197 PRK06197 short chain dehydroge 30.9 40 0.00087 25.0 2.1 44 9-61 17-60 (306)
198 cd01838 Isoamyl_acetate_hydrol 30.9 1.7E+02 0.0036 19.6 6.8 56 9-65 33-98 (199)
199 PRK06482 short chain dehydroge 30.8 41 0.00089 24.3 2.1 33 10-51 4-36 (276)
200 TIGR00385 dsbE periplasmic pro 30.6 1.8E+02 0.004 20.0 7.2 52 6-63 62-113 (173)
201 PRK06947 glucose-1-dehydrogena 30.5 1.9E+02 0.0042 20.2 5.8 14 10-23 4-17 (248)
202 PRK12744 short chain dehydroge 30.4 1.2E+02 0.0027 21.5 4.6 15 9-23 9-23 (257)
203 PRK08263 short chain dehydroge 30.4 42 0.00091 24.3 2.1 34 10-52 5-38 (275)
204 PLN02427 UDP-apiose/xylose syn 30.4 68 0.0015 24.7 3.4 38 6-51 12-49 (386)
205 PF05577 Peptidase_S28: Serine 30.0 42 0.00092 26.6 2.2 69 6-86 110-183 (434)
206 PRK05557 fabG 3-ketoacyl-(acyl 29.9 47 0.001 23.0 2.2 34 9-51 6-39 (248)
207 PRK06114 short chain dehydroge 29.8 92 0.002 22.2 3.8 33 10-51 10-42 (254)
208 PRK09987 dTDP-4-dehydrorhamnos 29.8 1.1E+02 0.0025 22.7 4.4 31 10-50 2-32 (299)
209 PTZ00056 glutathione peroxidas 29.8 2.1E+02 0.0047 20.5 6.3 56 7-63 39-100 (199)
210 PRK06841 short chain dehydroge 29.5 42 0.00091 23.7 1.9 34 9-51 16-49 (255)
211 PF13377 Peripla_BP_3: Peripla 29.3 1.6E+02 0.0035 19.0 4.7 36 12-51 71-107 (160)
212 PRK08309 short chain dehydroge 29.2 1.4E+02 0.0031 21.2 4.6 32 10-51 2-33 (177)
213 PRK06483 dihydromonapterin red 29.1 51 0.0011 23.2 2.3 33 10-51 4-36 (236)
214 cd01820 PAF_acetylesterase_lik 29.1 2E+02 0.0043 20.2 5.4 54 8-65 60-119 (214)
215 PRK06139 short chain dehydroge 29.0 49 0.0011 25.6 2.3 44 9-61 8-51 (330)
216 TIGR00243 Dxr 1-deoxy-D-xylulo 28.9 1.6E+02 0.0034 24.5 5.3 47 10-64 3-49 (389)
217 PRK06701 short chain dehydroge 28.9 95 0.002 23.1 3.8 34 9-51 47-80 (290)
218 TIGR00288 conserved hypothetic 28.8 1.5E+02 0.0032 21.5 4.7 45 8-62 106-150 (160)
219 PRK07041 short chain dehydroge 28.6 33 0.00071 23.9 1.2 31 12-51 1-31 (230)
220 PRK07578 short chain dehydroge 28.4 2E+02 0.0042 19.6 5.6 32 10-51 2-33 (199)
221 TIGR02622 CDP_4_6_dhtase CDP-g 28.4 81 0.0018 23.9 3.4 38 9-55 5-42 (349)
222 PRK05876 short chain dehydroge 28.4 57 0.0012 24.0 2.5 41 9-58 7-47 (275)
223 cd06270 PBP1_GalS_like Ligand 28.2 1.3E+02 0.0029 21.1 4.3 37 12-52 180-217 (268)
224 PLN02989 cinnamyl-alcohol dehy 28.0 92 0.002 23.1 3.6 36 9-53 6-41 (325)
225 PLN02695 GDP-D-mannose-3',5'-e 27.9 69 0.0015 24.9 3.0 35 7-50 20-54 (370)
226 PRK09730 putative NAD(P)-bindi 27.9 65 0.0014 22.4 2.7 14 10-23 3-16 (247)
227 PLN02780 ketoreductase/ oxidor 27.6 56 0.0012 25.0 2.4 45 9-62 54-98 (320)
228 PRK07201 short chain dehydroge 27.6 62 0.0013 26.6 2.8 35 10-51 2-36 (657)
229 cd01836 FeeA_FeeB_like SGNH_hy 27.6 2E+02 0.0043 19.5 6.1 56 8-63 2-62 (191)
230 KOG1384 tRNA delta(2)-isopente 27.6 29 0.00062 28.4 0.9 19 8-28 7-33 (348)
231 PRK06550 fabG 3-ketoacyl-(acyl 27.2 52 0.0011 23.0 2.0 33 10-51 7-39 (235)
232 TIGR01162 purE phosphoribosyla 27.1 1.4E+02 0.0031 21.6 4.3 50 11-63 2-51 (156)
233 TIGR01829 AcAcCoA_reduct aceto 26.9 65 0.0014 22.3 2.5 32 10-50 2-33 (242)
234 cd04762 HTH_MerR-trunc Helix-T 26.9 96 0.0021 16.0 2.7 32 27-60 15-46 (49)
235 PLN02253 xanthoxin dehydrogena 26.5 1.7E+02 0.0036 21.1 4.7 34 9-51 19-52 (280)
236 PRK12367 short chain dehydroge 26.4 51 0.0011 24.2 2.0 34 9-51 15-48 (245)
237 PRK12936 3-ketoacyl-(acyl-carr 25.5 2.2E+02 0.0048 19.7 5.0 16 9-24 7-22 (245)
238 PRK08278 short chain dehydroge 25.5 55 0.0012 23.9 2.0 35 9-52 7-41 (273)
239 PRK07856 short chain dehydroge 25.4 56 0.0012 23.2 2.0 34 9-51 7-40 (252)
240 PRK06200 2,3-dihydroxy-2,3-dih 25.3 1.9E+02 0.0041 20.6 4.7 34 9-51 7-40 (263)
241 cd00340 GSH_Peroxidase Glutath 25.1 2.2E+02 0.0047 19.1 6.8 55 7-63 22-82 (152)
242 COG0180 TrpS Tryptophanyl-tRNA 25.1 47 0.001 26.6 1.6 75 14-88 12-95 (314)
243 TIGR03609 S_layer_CsaB polysac 24.7 1.7E+02 0.0036 21.8 4.5 59 8-66 64-126 (298)
244 PF03018 Dirigent: Dirigent-li 24.4 37 0.00081 23.7 0.9 15 8-22 102-116 (144)
245 COG3449 DNA gyrase inhibitor [ 24.2 1.8E+02 0.0039 21.1 4.4 36 18-53 21-57 (154)
246 cd01833 XynB_like SGNH_hydrola 24.0 2.2E+02 0.0047 18.6 5.0 12 40-51 41-52 (157)
247 cd01336 MDH_cytoplasmic_cytoso 23.9 2.6E+02 0.0056 21.9 5.6 40 8-51 2-43 (325)
248 PRK06484 short chain dehydroge 23.9 99 0.0021 24.7 3.3 35 8-51 5-39 (520)
249 cd06297 PBP1_LacI_like_12 Liga 23.7 1.9E+02 0.0041 20.6 4.5 39 12-54 183-222 (269)
250 PF08898 DUF1843: Domain of un 23.6 37 0.00081 20.6 0.7 14 16-29 12-25 (53)
251 PF07993 NAD_binding_4: Male s 23.6 2.9E+02 0.0063 19.9 5.6 47 13-67 1-47 (249)
252 PRK11908 NAD-dependent epimera 23.4 1.8E+02 0.004 21.9 4.6 34 10-51 3-36 (347)
253 smart00719 Plus3 Short conserv 23.1 1.1E+02 0.0023 20.3 2.9 29 35-63 79-107 (109)
254 PF14737 DUF4470: Domain of un 23.0 66 0.0014 20.7 1.8 35 10-47 25-59 (100)
255 COG3875 Uncharacterized conser 22.9 2.1E+02 0.0045 24.0 5.0 48 22-69 82-132 (423)
256 PLN00198 anthocyanidin reducta 22.8 1E+02 0.0022 23.1 3.0 35 9-52 10-44 (338)
257 PRK15181 Vi polysaccharide bio 22.6 1.2E+02 0.0025 23.2 3.3 34 9-51 16-49 (348)
258 PRK12823 benD 1,6-dihydroxycyc 22.5 1.6E+02 0.0034 20.9 3.9 35 8-51 8-42 (260)
259 PF13415 Kelch_3: Galactose ox 22.1 54 0.0012 18.0 1.1 10 10-19 3-12 (49)
260 COG0593 DnaA ATPase involved i 21.7 3E+02 0.0066 22.8 5.8 36 9-47 114-149 (408)
261 PRK08324 short chain dehydroge 21.6 68 0.0015 27.3 2.1 35 9-52 423-457 (681)
262 PRK05717 oxidoreductase; Valid 21.5 84 0.0018 22.4 2.3 34 9-51 11-44 (255)
263 COG5625 Predicted transcriptio 21.1 1.4E+02 0.003 20.7 3.1 50 19-68 47-99 (113)
264 PF08024 Antimicrobial_4: Ant 20.9 90 0.002 16.1 1.7 13 23-35 9-21 (24)
265 COG4962 CpaF Flp pilus assembl 20.8 1.5E+02 0.0032 24.4 3.7 34 8-47 173-206 (355)
266 PRK06718 precorrin-2 dehydroge 20.8 80 0.0017 22.9 2.1 15 10-25 12-26 (202)
267 KOG1502 Flavonol reductase/cin 20.8 2E+02 0.0044 23.2 4.5 38 7-53 5-42 (327)
268 PF03807 F420_oxidored: NADP o 20.4 2.1E+02 0.0046 17.2 4.0 35 11-52 2-37 (96)
269 cd02947 TRX_family TRX family; 20.4 1.8E+02 0.0038 16.3 5.2 41 8-51 11-51 (93)
270 PLN00016 RNA-binding protein; 20.4 64 0.0014 25.0 1.5 37 8-53 52-92 (378)
271 PF04263 TPK_catalytic: Thiami 20.3 65 0.0014 21.9 1.4 29 7-36 84-112 (123)
272 PRK09416 lstR lineage-specific 20.2 67 0.0015 22.8 1.5 34 17-52 72-105 (135)
273 COG0300 DltE Short-chain dehyd 20.0 2.6E+02 0.0057 21.7 4.8 47 8-63 6-52 (265)
No 1
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=99.89 E-value=1.4e-23 Score=152.92 Aligned_cols=68 Identities=34% Similarity=0.574 Sum_probs=56.2
Q ss_pred EEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhcccCCccChhHHHh
Q 037431 12 AVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRIDHLYGSHAAIQ 80 (93)
Q Consensus 12 VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~~~~~~e~~~~~~~ 80 (93)
||||||||||+|||+||||+|+++|.||++++|||++|+++++++|++++++++++ ......+.+.++
T Consensus 1 VifGatGDLA~RKL~PaL~~L~~~g~lp~~~~Iig~~R~~~~~~~f~~~v~~~l~~-~~~~~~~~~~~~ 68 (183)
T PF00479_consen 1 VIFGATGDLAKRKLLPALYNLYRDGLLPEDFRIIGVARSDLSDEEFREKVREALKK-FSREEIDEEKWE 68 (183)
T ss_dssp EEETTTSHHHHHTHHHHHHHHHHTTSS-SSEEEEEEESS--SHHCCHHHHHHCCGG--S-CCCSHHHHH
T ss_pred CEeccccHHHHhHHHHHHHHHHHhCCCCCCcEEEEecCCcCCHHHHHHHHHHHHHh-hhccccCHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999 223333434444
No 2
>PLN02333 glucose-6-phosphate 1-dehydrogenase
Probab=99.86 E-value=8e-22 Score=164.87 Aligned_cols=73 Identities=45% Similarity=0.843 Sum_probs=66.0
Q ss_pred CCCCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhcccCCccChhH
Q 037431 5 QASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRIDHLYGSHA 77 (93)
Q Consensus 5 ~~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~~~~~~e~~~~ 77 (93)
...+++|||||||||||+||||||||+|+++|.||++++|||++|+++++++|+++++++++++.+..+.|.+
T Consensus 114 ~~~~~~iVIFGASGDLAkRKL~PALf~L~~~g~Lp~~~~IiG~aRs~~t~eefr~~v~~~l~~~~~~~~~~~~ 186 (604)
T PLN02333 114 DESTVSITVVGASGDLAKKKIFPALFALYYEGCLPEHFTIFGYARSKMTDAELRNMVSKTLTCRIDKRENCGE 186 (604)
T ss_pred CCCceEEEEecCccHHhHhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHhhcccccccHH
Confidence 4567999999999999999999999999999999999999999999999999999999999987654445533
No 3
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=99.86 E-value=1.2e-21 Score=163.12 Aligned_cols=67 Identities=52% Similarity=0.965 Sum_probs=63.0
Q ss_pred CCCCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhcccCC
Q 037431 5 QASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRIDH 71 (93)
Q Consensus 5 ~~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~~~~~ 71 (93)
.+++++|||||||||||+|||+||||+|+++|.||++++|||+||+++++++|+++++++++++.+.
T Consensus 85 ~~~~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~~~s~e~fr~~v~~~l~~~~~~ 151 (573)
T PLN02640 85 GESTLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTKLTDEELRDMISSTLTCRIDQ 151 (573)
T ss_pred CCCCeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHhhccc
Confidence 4558999999999999999999999999999999999999999999999999999999999887653
No 4
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=99.85 E-value=2.6e-21 Score=158.72 Aligned_cols=67 Identities=37% Similarity=0.641 Sum_probs=63.4
Q ss_pred CCCCCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhcccC
Q 037431 4 NQASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRID 70 (93)
Q Consensus 4 ~~~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~~~~ 70 (93)
....+++|||||||||||+|||+||||+|++.|.||++++|||++|+++++++|++.++++++++.+
T Consensus 5 ~~~~~~~~vifGatGDLa~rkL~PaL~~L~~~~~lp~~~~IiG~aR~~~~~e~~r~~v~~~l~~~~~ 71 (495)
T PRK05722 5 RTAEPCDLVIFGATGDLARRKLLPALYNLYKAGLLPEDFRIIGVARRDWSDEDFREVVREALKEFAR 71 (495)
T ss_pred CCCCCeEEEEeCCchHHhHhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhcc
Confidence 5667899999999999999999999999999999999999999999999999999999999998653
No 5
>PRK12854 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=99.85 E-value=2.7e-21 Score=158.42 Aligned_cols=67 Identities=31% Similarity=0.456 Sum_probs=62.9
Q ss_pred CCCCCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhcccC
Q 037431 4 NQASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRID 70 (93)
Q Consensus 4 ~~~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~~~~ 70 (93)
...++++|||||||||||+|||+||||+|+++|.||++++|||+||+++++++|+++++++++++.+
T Consensus 7 ~~~~~~~~VIFGAtGDLa~RKL~PaL~~L~~~~~lp~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~ 73 (484)
T PRK12854 7 GPAPPTVFVLFGATGDLAKRKLLPGLFHLARAGLLPPDWRIVGTGRGDVSAEAFREHARDALDEFGA 73 (484)
T ss_pred CCCCCeEEEEeCCchHHhhhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhcc
Confidence 3456899999999999999999999999999999999999999999999999999999999998754
No 6
>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=3e-21 Score=158.01 Aligned_cols=65 Identities=34% Similarity=0.642 Sum_probs=61.3
Q ss_pred CCCCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhcccC
Q 037431 5 QASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRID 70 (93)
Q Consensus 5 ~~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~~~~ 70 (93)
...++++||||||||||+|||+||||+|+++|.||++++|||+||++|++++|++.+++++ .+.+
T Consensus 4 ~~~~~~lvIFGatGDLA~RKL~PALy~L~~~g~l~~~~~IiG~aR~~~s~e~f~~~~~~~i-~~~~ 68 (483)
T COG0364 4 TVEPFDLVIFGATGDLARRKLFPALYRLYKEGLLPEDFRIIGVARSKWSNEEFRALVREAI-EFAK 68 (483)
T ss_pred ccCcceEEEEcccchhhhhhHHHHHHHHHHcCCCCCCceEEEEecCcCChHHHHHHHHHHh-hhcc
Confidence 4578999999999999999999999999999999999999999999999999999999999 5544
No 7
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=99.84 E-value=3.8e-21 Score=157.43 Aligned_cols=66 Identities=35% Similarity=0.540 Sum_probs=62.5
Q ss_pred CCCCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhcccC
Q 037431 5 QASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRID 70 (93)
Q Consensus 5 ~~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~~~~ 70 (93)
..++++|||||||||||+|||+||||+|+++|.||++++|||+||+++++++|+++++++++++..
T Consensus 5 ~~~~~~~vIfGAtGDLA~RkL~PaL~~L~~~~~lp~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~ 70 (482)
T PRK12853 5 PAPPCTLVIFGATGDLARRKLLPALYRLARAGLLPEDLRIIGVGRDDWSDEQWRARVRESLRAFGA 70 (482)
T ss_pred CCCCeEEEEeCCccHHHHhhHHHHHHHHHHcCCCCCCCEEEEEeCCcCCHHHHHHHHHHHHHhhcc
Confidence 456899999999999999999999999999999999999999999999999999999999998764
No 8
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase. This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.
Probab=99.84 E-value=3.5e-21 Score=157.56 Aligned_cols=64 Identities=33% Similarity=0.580 Sum_probs=61.1
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhcccC
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRID 70 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~~~~ 70 (93)
++++|||||||||||+|||+||||+|++.|.||++++|||++|+++++++|+++++++++++.+
T Consensus 1 ~~~~~vifGatGDLa~rkL~PaL~~L~~~~~lp~~~~Iig~aR~~~s~e~f~~~v~~~l~~~~~ 64 (482)
T TIGR00871 1 DPCILVIFGASGDLARKKLFPALYRLFRNGLLPPDFRIVGVARRDLSVEDFRKQVREAIIKFET 64 (482)
T ss_pred CCeEEEEECCccHHHHhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHhhcC
Confidence 4789999999999999999999999999999999999999999999999999999999998764
No 9
>PLN02539 glucose-6-phosphate 1-dehydrogenase
Probab=99.84 E-value=6.8e-21 Score=156.33 Aligned_cols=66 Identities=41% Similarity=0.718 Sum_probs=61.9
Q ss_pred CCCCCeEEEEEccchHhhhHhhHHHHHHHHHcCCC-CCCeeEEEEeCCCCChHHHHHHHHHHhhccc
Q 037431 4 NQASSLCIAVIGATGELARRKIFQALFALYYSGFL-PENAGIVSYSRKNLIDEDLRSITASVLSCRI 69 (93)
Q Consensus 4 ~~~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~L-p~~~~Iig~aR~~~s~~~~~~~v~~~l~~~~ 69 (93)
...++++|||||||||||+|||+||||+|+++|.| |++++|||++|+++++++|+++++++++++.
T Consensus 13 ~~~~~~~~VIFGAtGDLa~RKL~PaL~~L~~~~~lpp~~~~IiG~aR~~~s~e~fr~~v~~~l~~~~ 79 (491)
T PLN02539 13 VETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLPPDEVHIFGYARSKITDEELRDRIRGYLKDEK 79 (491)
T ss_pred CCCCCeEEEEeCCccHHHHhhHHHHHHHHHHcCCCCCCCcEEEEEECCCCCHHHHHHHHHHHHHhhc
Confidence 34568999999999999999999999999999999 7899999999999999999999999998764
No 10
>PTZ00309 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=99.81 E-value=5e-20 Score=152.70 Aligned_cols=62 Identities=39% Similarity=0.691 Sum_probs=56.0
Q ss_pred CCCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChH-HHHHH-HHHHhhc
Q 037431 6 ASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDE-DLRSI-TASVLSC 67 (93)
Q Consensus 6 ~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~-~~~~~-v~~~l~~ 67 (93)
..+++|||||||||||+||||||||+|++.|.||++++|||+||++++++ +|++. +++.++.
T Consensus 52 ~~~~~iVIFGATGDLA~RKL~PAL~~L~~~g~lp~~~~IiG~aR~~~~~e~~~~~~~l~~~~~~ 115 (542)
T PTZ00309 52 SRALTIIVLGASGDLAKKKTFPALFQLYCEGLLPSEVNIVGYARSKMSDVERWKKETLARFFKR 115 (542)
T ss_pred CCCeEEEEecCccHHhhhhHHHHHHHHHHcCCCCCCCEEEEEeCCCCCcHHHHHHHHHHHHhhc
Confidence 34799999999999999999999999999999999999999999999999 77776 6666653
No 11
>KOG0563 consensus Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=5.8e-20 Score=150.23 Aligned_cols=77 Identities=44% Similarity=0.740 Sum_probs=71.0
Q ss_pred CCCCCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhcccCCccChhHHHhh
Q 037431 4 NQASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRIDHLYGSHAAIQI 81 (93)
Q Consensus 4 ~~~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~~~~~~e~~~~~~~~ 81 (93)
+.+.+.+|||||||||||+||+|||||+||++|.+|+++.|+|+||+.++++++++.+.+.+++..... .|.++++-
T Consensus 13 ~~~~~~~iiVfGASGDLAKKK~fPaLf~L~~~g~lp~~~~i~GYARSklt~ee~~~~~~~~l~~~~~~~-~~~~k~~~ 89 (499)
T KOG0563|consen 13 QGESTLSIIVFGASGDLAKKKIFPALFALYREGLLPEDFKIFGYARSKLTDEELRKSISETLKCRKDEK-NCGEKLED 89 (499)
T ss_pred CCcceEEEEEEecCchhhhcchhHHHHHHHHhccCCCceEEEEEecccCChHHHHHHHhhhcCCCcchh-hHhhhHHH
Confidence 445689999999999999999999999999999999999999999999999999999999999998876 77777743
No 12
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=90.24 E-value=2.4 Score=26.10 Aligned_cols=56 Identities=14% Similarity=0.002 Sum_probs=43.6
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHH
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASV 64 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~ 64 (93)
..+++.|.+++.=.-++.+|.|-.+++.-.-..++.||+++.. -+.+++.+.+++.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d-~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD-EDEEEWKKFLKKN 57 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S-SSHHHHHHHHHTC
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC-CCHHHHHHHHHhc
Confidence 4678999999998899999999999876322578999999996 4567888887765
No 13
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=89.98 E-value=0.7 Score=31.51 Aligned_cols=36 Identities=31% Similarity=0.322 Sum_probs=26.8
Q ss_pred EEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChH
Q 037431 11 IAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDE 55 (93)
Q Consensus 11 ~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~ 55 (93)
++|+||||-++++.+ -.|.+.| ..|+++.|++...+
T Consensus 1 I~V~GatG~vG~~l~----~~L~~~~-----~~V~~~~R~~~~~~ 36 (183)
T PF13460_consen 1 ILVFGATGFVGRALA----KQLLRRG-----HEVTALVRSPSKAE 36 (183)
T ss_dssp EEEETTTSHHHHHHH----HHHHHTT-----SEEEEEESSGGGHH
T ss_pred eEEECCCChHHHHHH----HHHHHCC-----CEEEEEecCchhcc
Confidence 689999999998743 4445555 78999999876433
No 14
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=88.89 E-value=2.8 Score=29.93 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=25.0
Q ss_pred EEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 11 IAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 11 ~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+.|+||||.+++.- +.+|-. .++.|.++.|..
T Consensus 1 I~V~GatG~~G~~v-~~~L~~--------~~~~V~~l~R~~ 32 (233)
T PF05368_consen 1 ILVTGATGNQGRSV-VRALLS--------AGFSVRALVRDP 32 (233)
T ss_dssp EEEETTTSHHHHHH-HHHHHH--------TTGCEEEEESSS
T ss_pred CEEECCccHHHHHH-HHHHHh--------CCCCcEEEEecc
Confidence 68999999999543 366555 368899999987
No 15
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=87.64 E-value=2.9 Score=26.73 Aligned_cols=51 Identities=14% Similarity=-0.059 Sum_probs=40.5
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHH
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITAS 63 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~ 63 (93)
....+|.|.+++.=.-+...|.|..++.+ ..+++++..+.+.++..+.+++
T Consensus 20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~~------~~~i~i~~~~~~~~~~~~~~~~ 70 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFTSPTVNQLAAD------YPVVSVALRSGDDGAVARFMQK 70 (123)
T ss_pred CCEEEEEEECCcChhhhhhChHHHHHHhh------CCEEEEEccCCCHHHHHHHHHH
Confidence 36789999999999999999999999865 5678888766566777766655
No 16
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=85.76 E-value=0.78 Score=33.32 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=25.8
Q ss_pred CCCCCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 4 NQASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 4 ~~~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+...+-.++|+||||.+++.-+ ..| ...| ..|+++.|+.
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~-~~L---~~~g-----~~V~~~~R~~ 51 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIV-EQL---LAKG-----FAVKAGVRDV 51 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHH-HHH---HhCC-----CEEEEEecCH
Confidence 3444568999999999987654 332 2233 4677777764
No 17
>PRK07454 short chain dehydrogenase; Provisional
Probab=84.59 E-value=1.3 Score=31.41 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=28.0
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
-.++|.||+|.++..-. .. |.+.| .+|+.++|+....++..+.+
T Consensus 7 k~vlItG~sg~iG~~la-~~---l~~~G-----~~V~~~~r~~~~~~~~~~~~ 50 (241)
T PRK07454 7 PRALITGASSGIGKATA-LA---FAKAG-----WDLALVARSQDALEALAAEL 50 (241)
T ss_pred CEEEEeCCCchHHHHHH-HH---HHHCC-----CEEEEEeCCHHHHHHHHHHH
Confidence 36899999999986543 22 22333 57888998764444444444
No 18
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=79.29 E-value=2.6 Score=29.40 Aligned_cols=44 Identities=25% Similarity=0.241 Sum_probs=28.5
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
-+++|.||+|-++.... . .|.+.| .+|++++|+....+.....+
T Consensus 6 ~~ilItGasg~iG~~l~-~---~l~~~g-----~~v~~~~r~~~~~~~~~~~~ 49 (246)
T PRK05653 6 KTALVTGASRGIGRAIA-L---RLAADG-----AKVVIYDSNEEAAEALAAEL 49 (246)
T ss_pred CEEEEECCCcHHHHHHH-H---HHHHCC-----CEEEEEeCChhHHHHHHHHH
Confidence 47999999999996543 2 233334 45888998865444444443
No 19
>PRK07326 short chain dehydrogenase; Provisional
Probab=79.08 E-value=1.6 Score=30.70 Aligned_cols=44 Identities=11% Similarity=0.034 Sum_probs=27.8
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
-.++|.||||.++..-. ..| ... +.+|++++|+.....+..+.+
T Consensus 7 ~~ilItGatg~iG~~la-~~l---~~~-----g~~V~~~~r~~~~~~~~~~~l 50 (237)
T PRK07326 7 KVALITGGSKGIGFAIA-EAL---LAE-----GYKVAITARDQKELEEAAAEL 50 (237)
T ss_pred CEEEEECCCCcHHHHHH-HHH---HHC-----CCEEEEeeCCHHHHHHHHHHH
Confidence 57899999999986554 222 222 357888888764333444443
No 20
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=78.72 E-value=4.7 Score=25.68 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhh
Q 037431 26 FQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLS 66 (93)
Q Consensus 26 ~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~ 66 (93)
-|.+|++.++|.+|+..+|=+ ....|...|..+|+.....
T Consensus 27 rstiYr~i~~~~FPkpvklG~-r~v~W~~SEI~~Wi~~~~~ 66 (70)
T COG3311 27 RSTIYRLIKDGTFPKPVKLGG-RSVAWPESEIDEWIASRKA 66 (70)
T ss_pred HHHHHHHHccCCCCCCeecCc-ccccccHHHHHHHHHHHHh
Confidence 589999999999998777643 5667777787777765543
No 21
>PRK07774 short chain dehydrogenase; Provisional
Probab=78.67 E-value=2.7 Score=29.75 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=28.3
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITA 62 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~ 62 (93)
+++|.||+|.++.... .+|.+.| .+++.++|+....++..+.+.
T Consensus 8 ~vlItGasg~iG~~la----~~l~~~g-----~~vi~~~r~~~~~~~~~~~~~ 51 (250)
T PRK07774 8 VAIVTGAAGGIGQAYA----EALAREG-----ASVVVADINAEGAERVAKQIV 51 (250)
T ss_pred EEEEECCCchHHHHHH----HHHHHCC-----CEEEEEeCCHHHHHHHHHHHH
Confidence 5899999999985433 2233334 478889987644445544443
No 22
>PRK07677 short chain dehydrogenase; Provisional
Probab=77.18 E-value=3.1 Score=29.79 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=26.9
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
+++|.||+|.++..-. ..|.+.| .+|+.++|+....++..+.+
T Consensus 3 ~~lItG~s~giG~~ia----~~l~~~G-----~~Vi~~~r~~~~~~~~~~~~ 45 (252)
T PRK07677 3 VVIITGGSSGMGKAMA----KRFAEEG-----ANVVITGRTKEKLEEAKLEI 45 (252)
T ss_pred EEEEeCCCChHHHHHH----HHHHHCC-----CEEEEEeCCHHHHHHHHHHH
Confidence 5799999999985433 2222333 57888888764444444433
No 23
>PRK06125 short chain dehydrogenase; Provisional
Probab=76.76 E-value=9.3 Score=27.44 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=27.3
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
-+++|.||+|.++.--. .. |.+.| .+|+.++|+....++..+.+
T Consensus 8 k~vlItG~~~giG~~ia-~~---l~~~G-----~~V~~~~r~~~~~~~~~~~l 51 (259)
T PRK06125 8 KRVLITGASKGIGAAAA-EA---FAAEG-----CHLHLVARDADALEALAADL 51 (259)
T ss_pred CEEEEeCCCchHHHHHH-HH---HHHcC-----CEEEEEeCCHHHHHHHHHHH
Confidence 47899999999985432 22 22333 57888988764444433333
No 24
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=76.45 E-value=6.5 Score=27.46 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=33.9
Q ss_pred EEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhcc
Q 037431 11 IAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCR 68 (93)
Q Consensus 11 ~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~~ 68 (93)
++|+|+||=..+--| -=+. ..|++|+|+|.+- ..+.+...+++++.--++
T Consensus 1 i~ILGsTGSIG~qtL----dVi~---~~~d~f~v~~Lsa-~~n~~~L~~q~~~f~p~~ 50 (129)
T PF02670_consen 1 IAILGSTGSIGTQTL----DVIR---KHPDKFEVVALSA-GSNIEKLAEQAREFKPKY 50 (129)
T ss_dssp EEEESTTSHHHHHHH----HHHH---HCTTTEEEEEEEE-SSTHHHHHHHHHHHT-SE
T ss_pred CEEEcCCcHHHHHHH----HHHH---hCCCceEEEEEEc-CCCHHHHHHHHHHhCCCE
Confidence 589999999886433 2222 2378999999987 445677777777654333
No 25
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=74.50 E-value=3.8 Score=29.02 Aligned_cols=44 Identities=16% Similarity=0.039 Sum_probs=28.4
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
-+++|.||||.++..-. ..| .+. +.++++++|+....+++...+
T Consensus 5 ~~vlItG~sg~iG~~la-~~l---~~~-----g~~v~~~~r~~~~~~~~~~~~ 48 (258)
T PRK12429 5 KVALVTGAASGIGLEIA-LAL---AKE-----GAKVVIADLNDEAAAAAAEAL 48 (258)
T ss_pred CEEEEECCCchHHHHHH-HHH---HHC-----CCeEEEEeCCHHHHHHHHHHH
Confidence 37899999999985332 222 223 457888999875555554443
No 26
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=74.38 E-value=19 Score=24.59 Aligned_cols=54 Identities=11% Similarity=0.045 Sum_probs=34.0
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCC----hHHHHHHHHHHh
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLI----DEDLRSITASVL 65 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s----~~~~~~~v~~~l 65 (93)
+++++-+|-+|+-+...+ .++...-..+.+.-||.+|-.+.. .++|.+.+.+-+
T Consensus 40 ~~~~~n~g~~G~t~~~~~----~~l~~~~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li 97 (191)
T cd01836 40 GVRWRLFAKTGATSADLL----RQLAPLPETRFDVAVISIGVNDVTHLTSIARWRKQLAELV 97 (191)
T ss_pred ceEEEEEecCCcCHHHHH----HHHHhcccCCCCEEEEEecccCcCCCCCHHHHHHHHHHHH
Confidence 578899999999875543 233322223557888888876654 345555555544
No 27
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=73.82 E-value=3 Score=29.47 Aligned_cols=42 Identities=21% Similarity=0.152 Sum_probs=26.5
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSI 60 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~ 60 (93)
+++|.||||.|+.... ..| .+.| .+|++++|+....+.+.+.
T Consensus 3 ~vlItGa~g~lG~~l~-~~l---~~~g-----~~v~~~~r~~~~~~~~~~~ 44 (255)
T TIGR01963 3 TALVTGAASGIGLAIA-LAL---AAAG-----ANVVVNDLGEAGAEAAAKV 44 (255)
T ss_pred EEEEcCCcchHHHHHH-HHH---HHCC-----CEEEEEeCCHHHHHHHHHH
Confidence 5899999999986433 332 2333 4788898875443344433
No 28
>PRK05650 short chain dehydrogenase; Provisional
Probab=73.16 E-value=5.7 Score=28.79 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=26.6
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSI 60 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~ 60 (93)
+++|.||||.++..-.- .|.+. +.+++.++|+....++..+.
T Consensus 2 ~vlVtGasggIG~~la~----~l~~~-----g~~V~~~~r~~~~~~~~~~~ 43 (270)
T PRK05650 2 RVMITGAASGLGRAIAL----RWARE-----GWRLALADVNEEGGEETLKL 43 (270)
T ss_pred EEEEecCCChHHHHHHH----HHHHC-----CCEEEEEeCCHHHHHHHHHH
Confidence 57899999999977442 22333 35778888876444444333
No 29
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=72.32 E-value=25 Score=23.15 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=24.6
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRK 50 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~ 50 (93)
+++|+||+|-|++--. .+|.+.| ..+|+.++|+
T Consensus 2 ~~lItGa~~giG~~~a----~~l~~~g----~~~v~~~~r~ 34 (167)
T PF00106_consen 2 TVLITGASSGIGRALA----RALARRG----ARVVILTSRS 34 (167)
T ss_dssp EEEEETTTSHHHHHHH----HHHHHTT----TEEEEEEESS
T ss_pred EEEEECCCCHHHHHHH----HHHHhcC----ceEEEEeeec
Confidence 5799999999996543 3444444 5789999998
No 30
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=72.27 E-value=3.7 Score=29.37 Aligned_cols=45 Identities=13% Similarity=0.021 Sum_probs=28.0
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITA 62 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~ 62 (93)
-+++|.||+|.++..-. ..|.+.| .+|+.++|+....++..+.++
T Consensus 11 k~vlItGa~g~iG~~ia----~~l~~~G-----~~V~~~~r~~~~~~~~~~~i~ 55 (255)
T PRK07523 11 RRALVTGSSQGIGYALA----EGLAQAG-----AEVILNGRDPAKLAAAAESLK 55 (255)
T ss_pred CEEEEECCcchHHHHHH----HHHHHcC-----CEEEEEeCCHHHHHHHHHHHH
Confidence 36999999999986543 2233334 578888887543334444443
No 31
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=71.83 E-value=4.9 Score=28.58 Aligned_cols=45 Identities=13% Similarity=0.077 Sum_probs=29.9
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITA 62 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~ 62 (93)
-+++|.||||-++..-. .. |.+.| .+|+.++|+....++..+.+.
T Consensus 8 ~~vlItGasg~iG~~la-~~---l~~~G-----~~v~~~~r~~~~~~~~~~~~~ 52 (262)
T PRK13394 8 KTAVVTGAASGIGKEIA-LE---LARAG-----AAVAIADLNQDGANAVADEIN 52 (262)
T ss_pred CEEEEECCCChHHHHHH-HH---HHHCC-----CeEEEEeCChHHHHHHHHHHH
Confidence 36899999999997643 22 23344 468888888755555555544
No 32
>PRK12828 short chain dehydrogenase; Provisional
Probab=71.21 E-value=5.1 Score=27.82 Aligned_cols=39 Identities=23% Similarity=0.202 Sum_probs=24.9
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDED 56 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~ 56 (93)
-+++|.||||-++..-. -+|.+.| .++++++|+....++
T Consensus 8 k~vlItGatg~iG~~la----~~l~~~G-----~~v~~~~r~~~~~~~ 46 (239)
T PRK12828 8 KVVAITGGFGGLGRATA----AWLAARG-----ARVALIGRGAAPLSQ 46 (239)
T ss_pred CEEEEECCCCcHhHHHH----HHHHHCC-----CeEEEEeCChHhHHH
Confidence 36899999999885433 2223333 568888886644333
No 33
>PRK05866 short chain dehydrogenase; Provisional
Probab=70.02 E-value=8.7 Score=28.80 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=23.1
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-.++|.||+|-+++.-. -. |.+.| .+|+.++|+.
T Consensus 41 k~vlItGasggIG~~la-~~---La~~G-----~~Vi~~~R~~ 74 (293)
T PRK05866 41 KRILLTGASSGIGEAAA-EQ---FARRG-----ATVVAVARRE 74 (293)
T ss_pred CEEEEeCCCcHHHHHHH-HH---HHHCC-----CEEEEEECCH
Confidence 46899999999986433 11 22333 5788899875
No 34
>PRK06057 short chain dehydrogenase; Provisional
Probab=69.31 E-value=4.7 Score=28.94 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=24.6
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCC
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLI 53 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s 53 (93)
.-+++|.||||-++..-. ..|.+.| .+|+.++|+...
T Consensus 7 ~~~vlItGasggIG~~~a----~~l~~~G-----~~v~~~~r~~~~ 43 (255)
T PRK06057 7 GRVAVITGGGSGIGLATA----RRLAAEG-----ATVVVGDIDPEA 43 (255)
T ss_pred CCEEEEECCCchHHHHHH----HHHHHcC-----CEEEEEeCCHHH
Confidence 347899999999986544 2233333 578888886543
No 35
>PRK06914 short chain dehydrogenase; Provisional
Probab=69.26 E-value=5.9 Score=28.74 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=26.6
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRS 59 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~ 59 (93)
+++|.||||.++..-. ..| ... +.+|++++|+.-..++..+
T Consensus 5 ~~lItGasg~iG~~la-~~l---~~~-----G~~V~~~~r~~~~~~~~~~ 45 (280)
T PRK06914 5 IAIVTGASSGFGLLTT-LEL---AKK-----GYLVIATMRNPEKQENLLS 45 (280)
T ss_pred EEEEECCCchHHHHHH-HHH---HhC-----CCEEEEEeCCHHHHHHHHH
Confidence 5799999999986544 222 233 3578888887644444433
No 36
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=68.67 E-value=29 Score=22.53 Aligned_cols=44 Identities=5% Similarity=-0.087 Sum_probs=31.9
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
...+|.|=++.=-.=++-+|.|-.++++-. ..++.||+++..+.
T Consensus 24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~-~~~~~vi~i~~~~~ 67 (126)
T cd03012 24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYK-DDGLVVIGVHSPEF 67 (126)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHcC-cCCeEEEEeccCcc
Confidence 456777777776655677899999987632 35799999987543
No 37
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.87 E-value=5.7 Score=27.95 Aligned_cols=43 Identities=19% Similarity=0.161 Sum_probs=27.5
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSI 60 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~ 60 (93)
-+++|.||||-++..-. .+|.+.| .+|++++|+....++....
T Consensus 6 ~~vlItGasg~iG~~l~----~~l~~~G-----~~V~~~~r~~~~~~~~~~~ 48 (251)
T PRK07231 6 KVAIVTGASSGIGEGIA----RRFAAEG-----ARVVVTDRNEEAAERVAAE 48 (251)
T ss_pred cEEEEECCCChHHHHHH----HHHHHCC-----CEEEEEeCCHHHHHHHHHH
Confidence 47899999999996433 2233334 4689999987444443333
No 38
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=67.33 E-value=4 Score=29.91 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=22.6
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+++|+||||-++.+-+ ..| .+.| ..+.++.|+.
T Consensus 1 ~ilVtGatG~iG~~vv-~~L---~~~g-----~~V~~~~R~~ 33 (285)
T TIGR03649 1 TILLTGGTGKTASRIA-RLL---QAAS-----VPFLVASRSS 33 (285)
T ss_pred CEEEEcCCChHHHHHH-HHH---HhCC-----CcEEEEeCCC
Confidence 3789999999997655 443 3334 4567777765
No 39
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=67.23 E-value=5.9 Score=21.24 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=24.3
Q ss_pred HHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHH
Q 037431 27 QALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITA 62 (93)
Q Consensus 27 PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~ 62 (93)
..++++.++|.+|. .++ | ++.-++.+++.++++
T Consensus 16 ~ti~~~~~~g~i~~-~~~-g-~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 16 DTVYRLIHEGELPA-YRV-G-RHYRIPREDVDEYLE 48 (49)
T ss_pred HHHHHHHHcCCCCe-EEe-C-CeEEEeHHHHHHHHh
Confidence 57899999999984 444 6 556677788777754
No 40
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=67.09 E-value=8.2 Score=27.33 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=23.4
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
+++|.||+|.++.... .+|.+.| .+++.++|+..
T Consensus 2 ~~lItG~sg~iG~~la----~~l~~~G-----~~v~~~~r~~~ 35 (254)
T TIGR02415 2 VALVTGGAQGIGKGIA----ERLAKDG-----FAVAVADLNEE 35 (254)
T ss_pred EEEEeCCCchHHHHHH----HHHHHCC-----CEEEEEeCCHH
Confidence 5799999999997643 2233334 57888888743
No 41
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=67.03 E-value=39 Score=23.56 Aligned_cols=46 Identities=17% Similarity=0.103 Sum_probs=29.6
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC---CChHHHHHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN---LIDEDLRSITAS 63 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~---~s~~~~~~~v~~ 63 (93)
+++|.||+|.|+... .-+|...+ ..+||-++|+. ...+++.+.+++
T Consensus 2 tylitGG~gglg~~l----a~~La~~~----~~~~il~~r~~~~~~~~~~~i~~l~~ 50 (181)
T PF08659_consen 2 TYLITGGLGGLGQSL----ARWLAERG----ARRLILLGRSGAPSAEAEAAIRELES 50 (181)
T ss_dssp EEEEETTTSHHHHHH----HHHHHHTT-----SEEEEEESSGGGSTTHHHHHHHHHH
T ss_pred EEEEECCccHHHHHH----HHHHHHcC----CCEEEEeccCCCccHHHHHHHHHHHh
Confidence 579999999998543 24445555 46788888882 233455555554
No 42
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=65.67 E-value=9.8 Score=29.11 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=15.5
Q ss_pred EEEEEccchHhhhHhhHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALF 30 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~ 30 (93)
.++|+||||| -|+|...|-
T Consensus 2 ~ILvlGGT~e--gr~la~~L~ 20 (256)
T TIGR00715 2 TVLLMGGTVD--SRAIAKGLI 20 (256)
T ss_pred eEEEEechHH--HHHHHHHHH
Confidence 5899999999 677777764
No 43
>PRK07035 short chain dehydrogenase; Provisional
Probab=65.52 E-value=29 Score=24.63 Aligned_cols=43 Identities=21% Similarity=0.135 Sum_probs=26.6
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
+++|.||+|.++..-. - .|.+.| .+|+.++|+.-..++..+.+
T Consensus 10 ~vlItGas~gIG~~l~-~---~l~~~G-----~~Vi~~~r~~~~~~~~~~~~ 52 (252)
T PRK07035 10 IALVTGASRGIGEAIA-K---LLAQQG-----AHVIVSSRKLDGCQAVADAI 52 (252)
T ss_pred EEEEECCCcHHHHHHH-H---HHHHCC-----CEEEEEeCCHHHHHHHHHHH
Confidence 5899999999995433 1 223334 47888888654333444433
No 44
>PRK09186 flagellin modification protein A; Provisional
Probab=64.84 E-value=13 Score=26.41 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=27.0
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
+++|.||||-+++.-. .. |.+.| .+++.++|+....++..+.+
T Consensus 6 ~vlItGas~giG~~~a-~~---l~~~g-----~~v~~~~r~~~~~~~~~~~l 48 (256)
T PRK09186 6 TILITGAGGLIGSALV-KA---ILEAG-----GIVIAADIDKEALNELLESL 48 (256)
T ss_pred EEEEECCCchHHHHHH-HH---HHHCC-----CEEEEEecChHHHHHHHHHH
Confidence 6899999998885432 22 23333 57888888765544444444
No 45
>CHL00194 ycf39 Ycf39; Provisional
Probab=64.36 E-value=3.1 Score=31.38 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=23.6
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+++|+||||=++.+-+ +.|- ..| ..|+++.|+.
T Consensus 2 kIlVtGatG~iG~~lv-~~Ll---~~g-----~~V~~l~R~~ 34 (317)
T CHL00194 2 SLLVIGATGTLGRQIV-RQAL---DEG-----YQVRCLVRNL 34 (317)
T ss_pred EEEEECCCcHHHHHHH-HHHH---HCC-----CeEEEEEcCh
Confidence 5899999999887644 5443 344 4788888864
No 46
>PRK07060 short chain dehydrogenase; Provisional
Probab=63.97 E-value=5.3 Score=28.08 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=23.7
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|+||+|.++..-. ..|.+.| .+|+.++|+.
T Consensus 10 ~~~lItGa~g~iG~~~a----~~l~~~g-----~~V~~~~r~~ 43 (245)
T PRK07060 10 KSVLVTGASSGIGRACA----VALAQRG-----ARVVAAARNA 43 (245)
T ss_pred CEEEEeCCcchHHHHHH----HHHHHCC-----CEEEEEeCCH
Confidence 46899999999996653 2333444 4688888865
No 47
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=62.83 E-value=9.1 Score=27.42 Aligned_cols=35 Identities=29% Similarity=0.211 Sum_probs=23.0
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
.-.++|.||+|.++..- -.+|.+.| .+++.++|+.
T Consensus 12 ~k~ilItGa~g~IG~~l----a~~l~~~G-----~~V~~~~r~~ 46 (259)
T PRK08213 12 GKTALVTGGSRGLGLQI----AEALGEAG-----ARVVLSARKA 46 (259)
T ss_pred CCEEEEECCCchHHHHH----HHHHHHcC-----CEEEEEeCCH
Confidence 35699999999998542 12223334 4688888865
No 48
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=62.80 E-value=7.8 Score=27.63 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=23.8
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||+|.+++.-. .. |.+.| .+|+.++|+.
T Consensus 12 k~ilItGas~~IG~~la-~~---l~~~G-----~~v~~~~r~~ 45 (256)
T PRK06124 12 QVALVTGSARGLGFEIA-RA---LAGAG-----AHVLVNGRNA 45 (256)
T ss_pred CEEEEECCCchHHHHHH-HH---HHHcC-----CeEEEEeCCH
Confidence 46899999999986543 22 23334 4788899875
No 49
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=62.51 E-value=7.2 Score=27.75 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=28.6
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
-+++|.||+|-++..-.- .|.+.| .++++++|+....+++.+.+
T Consensus 13 k~vlItG~~g~iG~~la~----~l~~~G-----~~Vi~~~r~~~~~~~~~~~l 56 (247)
T PRK08945 13 RIILVTGAGDGIGREAAL----TYARHG-----ATVILLGRTEEKLEAVYDEI 56 (247)
T ss_pred CEEEEeCCCchHHHHHHH----HHHHCC-----CcEEEEeCCHHHHHHHHHHH
Confidence 469999999999865442 233333 47888988764444444443
No 50
>PRK08643 acetoin reductase; Validated
Probab=62.50 E-value=11 Score=26.83 Aligned_cols=43 Identities=12% Similarity=0.018 Sum_probs=26.4
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
+++|.||+|.++..-. .. |.+.| .+++.++|+.-..++....+
T Consensus 4 ~~lItGas~giG~~la-~~---l~~~G-----~~v~~~~r~~~~~~~~~~~~ 46 (256)
T PRK08643 4 VALVTGAGQGIGFAIA-KR---LVEDG-----FKVAIVDYNEETAQAAADKL 46 (256)
T ss_pred EEEEECCCChHHHHHH-HH---HHHCC-----CEEEEEeCCHHHHHHHHHHH
Confidence 5789999999996422 22 22333 57888888764444444443
No 51
>PRK07074 short chain dehydrogenase; Provisional
Probab=62.15 E-value=7.6 Score=27.71 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=26.3
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRS 59 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~ 59 (93)
+++|.||||.++..-. .. |.+.| .++++++|+....+++.+
T Consensus 4 ~ilItGat~~iG~~la-~~---L~~~g-----~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 4 TALVTGAAGGIGQALA-RR---FLAAG-----DRVLALDIDAAALAAFAD 44 (257)
T ss_pred EEEEECCcchHHHHHH-HH---HHHCC-----CEEEEEeCCHHHHHHHHH
Confidence 6899999999986543 22 22333 468888887654444443
No 52
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=61.48 E-value=32 Score=20.42 Aligned_cols=56 Identities=11% Similarity=-0.021 Sum_probs=41.1
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHH
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITAS 63 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~ 63 (93)
+...+|.|.++.=-.-++..|.|..+...-. ..+..++++.....+.+++.+.+.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~~v~~d~~~~~~~~~~~~~ 74 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYK-DDGVEVVGVNVDDDDPAAVKAFLKK 74 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhC-CCCeEEEEEECCCCCHHHHHHHHHH
Confidence 4567888888765566778899999987632 2479999998876556777776655
No 53
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=61.31 E-value=49 Score=22.54 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=33.4
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChH-HHHHHHHHHh
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDE-DLRSITASVL 65 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~-~~~~~v~~~l 65 (93)
+..++=.|-+||-.... -+..+.. . .+++.-||.+|-.++... +|.+.+++.+
T Consensus 31 ~~~v~N~g~~G~~~~~~---~~~~~~~-~-~~pd~vii~~G~ND~~~~~~~~~~~~~~i 84 (177)
T cd01844 31 GLEVINLGFSGNARLEP---EVAELLR-D-VPADLYIIDCGPNIVGAEAMVRERLGPLV 84 (177)
T ss_pred CCCeEEeeecccccchH---HHHHHHH-h-cCCCEEEEEeccCCCccHHHHHHHHHHHH
Confidence 46688889899833222 2333332 2 345889999999988766 4666655554
No 54
>PRK09291 short chain dehydrogenase; Provisional
Probab=61.30 E-value=8.2 Score=27.40 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=25.4
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLR 58 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~ 58 (93)
+++|.||||-++..-. -.|.+.| .++++++|+....++..
T Consensus 4 ~vlVtGasg~iG~~ia----~~l~~~G-----~~v~~~~r~~~~~~~~~ 43 (257)
T PRK09291 4 TILITGAGSGFGREVA----LRLARKG-----HNVIAGVQIAPQVTALR 43 (257)
T ss_pred EEEEeCCCCHHHHHHH----HHHHHCC-----CEEEEEeCCHHHHHHHH
Confidence 5899999999886542 2233334 57888888753333333
No 55
>PRK12829 short chain dehydrogenase; Provisional
Probab=61.09 E-value=7.7 Score=27.59 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=25.4
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDL 57 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~ 57 (93)
-+++|.||+|-++..-. -+|...| .+|++++|+.-..++.
T Consensus 12 ~~vlItGa~g~iG~~~a----~~L~~~g-----~~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 12 LRVLVTGGASGIGRAIA----EAFAEAG-----ARVHVCDVSEAALAAT 51 (264)
T ss_pred CEEEEeCCCCcHHHHHH----HHHHHCC-----CEEEEEeCCHHHHHHH
Confidence 57899999999985432 2233334 4688888865433333
No 56
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=60.88 E-value=5.9 Score=28.54 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=24.2
Q ss_pred EEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCCh
Q 037431 11 IAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLID 54 (93)
Q Consensus 11 ~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~ 54 (93)
++|.||||-++...+ ..| .+. +..|++++|+....
T Consensus 1 vlVtGatG~iG~~l~-~~L---~~~-----g~~V~~~~r~~~~~ 35 (292)
T TIGR01777 1 ILITGGTGFIGRALT-QRL---TKD-----GHEVTILTRSPPAG 35 (292)
T ss_pred CEEEcccchhhHHHH-HHH---HHc-----CCEEEEEeCCCCCC
Confidence 479999999996544 222 233 36899999877654
No 57
>PRK06949 short chain dehydrogenase; Provisional
Probab=60.75 E-value=8.9 Score=27.23 Aligned_cols=34 Identities=32% Similarity=0.291 Sum_probs=23.4
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||+|.++..-. ..|.+.| .+|++++|+.
T Consensus 10 k~ilItGasg~IG~~~a----~~l~~~G-----~~Vi~~~r~~ 43 (258)
T PRK06949 10 KVALVTGASSGLGARFA----QVLAQAG-----AKVVLASRRV 43 (258)
T ss_pred CEEEEECCCcHHHHHHH----HHHHHCC-----CEEEEEeCCH
Confidence 57899999999996544 2223333 4788888864
No 58
>PRK05875 short chain dehydrogenase; Provisional
Probab=60.20 E-value=8.9 Score=27.74 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=23.4
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
-+++|.||+|.++..-. ..|.+.| .+|++++|+..
T Consensus 8 k~vlItGasg~IG~~la----~~l~~~G-----~~V~~~~r~~~ 42 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVA----AGLVAAG-----AAVMIVGRNPD 42 (276)
T ss_pred CEEEEECCCcHHHHHHH----HHHHHCC-----CeEEEEeCCHH
Confidence 46899999999985432 2223334 47888888653
No 59
>PRK07478 short chain dehydrogenase; Provisional
Probab=60.14 E-value=9.4 Score=27.26 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=28.1
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
-+++|.||+|.++..-. ..|.+.| .+++.++|+....++..+.+
T Consensus 7 k~~lItGas~giG~~ia----~~l~~~G-----~~v~~~~r~~~~~~~~~~~~ 50 (254)
T PRK07478 7 KVAIITGASSGIGRAAA----KLFAREG-----AKVVVGARRQAELDQLVAEI 50 (254)
T ss_pred CEEEEeCCCChHHHHHH----HHHHHCC-----CEEEEEeCCHHHHHHHHHHH
Confidence 36899999999986532 1333344 46888888765444444444
No 60
>PRK07102 short chain dehydrogenase; Provisional
Probab=60.12 E-value=10 Score=26.93 Aligned_cols=39 Identities=31% Similarity=0.280 Sum_probs=25.4
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDL 57 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~ 57 (93)
+++|.||||-++..-. .. |.+.| .+++.++|+....++.
T Consensus 3 ~vlItGas~giG~~~a-~~---l~~~G-----~~Vi~~~r~~~~~~~~ 41 (243)
T PRK07102 3 KILIIGATSDIARACA-RR---YAAAG-----ARLYLAARDVERLERL 41 (243)
T ss_pred EEEEEcCCcHHHHHHH-HH---HHhcC-----CEEEEEeCCHHHHHHH
Confidence 5899999999985443 22 33344 4688888876433333
No 61
>PRK05993 short chain dehydrogenase; Provisional
Probab=59.46 E-value=4.5 Score=29.66 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=22.8
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+++|.||+|-++..-. -.|.+. +.+|++++|+.
T Consensus 6 ~vlItGasggiG~~la----~~l~~~-----G~~Vi~~~r~~ 38 (277)
T PRK05993 6 SILITGCSSGIGAYCA----RALQSD-----GWRVFATCRKE 38 (277)
T ss_pred EEEEeCCCcHHHHHHH----HHHHHC-----CCEEEEEECCH
Confidence 6899999999986532 122333 45788888875
No 62
>PRK08703 short chain dehydrogenase; Provisional
Probab=58.50 E-value=12 Score=26.44 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=28.8
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
-+++|.||+|-+++.-. ..| .+. +.+|+.++|+....++..+.+
T Consensus 7 k~vlItG~sggiG~~la-~~l---~~~-----g~~V~~~~r~~~~~~~~~~~l 50 (239)
T PRK08703 7 KTILVTGASQGLGEQVA-KAY---AAA-----GATVILVARHQKKLEKVYDAI 50 (239)
T ss_pred CEEEEECCCCcHHHHHH-HHH---HHc-----CCEEEEEeCChHHHHHHHHHH
Confidence 37899999999987642 222 222 457899999875444444443
No 63
>PRK07904 short chain dehydrogenase; Provisional
Probab=58.48 E-value=68 Score=23.23 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=31.0
Q ss_pred CCCCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCC-hHHHHHHHH
Q 037431 5 QASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLI-DEDLRSITA 62 (93)
Q Consensus 5 ~~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s-~~~~~~~v~ 62 (93)
...+-+++|.||||-+++-.. .+|.+.| ..+++.++|+.-. .++..+.+.
T Consensus 5 ~~~~~~vlItGas~giG~~la----~~l~~~g----g~~V~~~~r~~~~~~~~~~~~l~ 55 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAIC----ERYLKNA----PARVVLAALPDDPRRDAAVAQMK 55 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHH----HHHHhcC----CCeEEEEeCCcchhHHHHHHHHH
Confidence 344567999999999996532 2233333 3678888887654 444444443
No 64
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=58.11 E-value=57 Score=22.26 Aligned_cols=57 Identities=9% Similarity=0.042 Sum_probs=41.7
Q ss_pred CCCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC------ChHHHHHHHHH
Q 037431 6 ASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL------IDEDLRSITAS 63 (93)
Q Consensus 6 ~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~------s~~~~~~~v~~ 63 (93)
.+...++.|.+++=-.-+..+|.|-.|+..=. ..++.||+++..+. +.+++++.+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~-~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~ 86 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYG-AKGVAVVAINSNDIEAYPEDSPENMKAKAKE 86 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHh-hCCeEEEEEecCccccccccCHHHHHHHHHH
Confidence 34567888999988888888999999886421 24799999987653 45566666554
No 65
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=58.04 E-value=13 Score=32.09 Aligned_cols=41 Identities=27% Similarity=0.275 Sum_probs=27.1
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHH
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDL 57 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~ 57 (93)
.-+++|+||+|-++++-. - .|.+.| .+|+++.|+.-..+..
T Consensus 80 gKvVLVTGATGgIG~aLA-r---~LLk~G-----~~Vval~Rn~ekl~~l 120 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTV-R---ELLKLG-----FRVRAGVRSAQRAESL 120 (576)
T ss_pred CCEEEEECCCCHHHHHHH-H---HHHHCC-----CeEEEEeCCHHHHHHH
Confidence 346899999999987655 2 233334 5788888876443333
No 66
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.93 E-value=12 Score=26.17 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=26.0
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEE-eCCCCChHHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSY-SRKNLIDEDLRSI 60 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~-aR~~~s~~~~~~~ 60 (93)
.++|.||||.++.... .. |.+.| .+++.+ +|+....++..+.
T Consensus 7 ~ilI~Gasg~iG~~la-~~---l~~~g-----~~v~~~~~r~~~~~~~~~~~ 49 (247)
T PRK05565 7 VAIVTGASGGIGRAIA-EL---LAKEG-----AKVVIAYDINEEAAQELLEE 49 (247)
T ss_pred EEEEeCCCcHHHHHHH-HH---HHHCC-----CEEEEEcCCCHHHHHHHHHH
Confidence 6899999999996654 33 23334 456666 7765444444443
No 67
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=57.61 E-value=49 Score=21.37 Aligned_cols=55 Identities=16% Similarity=0.003 Sum_probs=39.9
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHcCC-CCCCeeEEEEeCCCCChHHHHHHHH
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYSGF-LPENAGIVSYSRKNLIDEDLRSITA 62 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~-Lp~~~~Iig~aR~~~s~~~~~~~v~ 62 (93)
+...+|-|.+|.--.-++..|.|-+++.+-. ...++.|++++... +.+++.+.+.
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~-~~~~~~~~~~ 73 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR-DEESFNDYFS 73 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCC-CHHHHHHHHH
Confidence 4568999999998888999999988875421 12368899998654 4556666544
No 68
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=57.08 E-value=10 Score=26.55 Aligned_cols=35 Identities=20% Similarity=0.125 Sum_probs=23.7
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
-+++|.||+|-++.... . +|.+.| .+|++++|+..
T Consensus 7 ~~ilItGasg~iG~~l~-~---~l~~~g-----~~V~~~~r~~~ 41 (251)
T PRK12826 7 RVALVTGAARGIGRAIA-V---RLAADG-----AEVIVVDICGD 41 (251)
T ss_pred CEEEEcCCCCcHHHHHH-H---HHHHCC-----CEEEEEeCCHH
Confidence 36899999999985443 2 233334 47888988753
No 69
>PRK06181 short chain dehydrogenase; Provisional
Probab=56.49 E-value=12 Score=26.81 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=22.3
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
+++|.||+|.++..-. ..| ...| .+|++++|+..
T Consensus 3 ~vlVtGasg~iG~~la-~~l---~~~g-----~~Vi~~~r~~~ 36 (263)
T PRK06181 3 VVIITGASEGIGRALA-VRL---ARAG-----AQLVLAARNET 36 (263)
T ss_pred EEEEecCCcHHHHHHH-HHH---HHCC-----CEEEEEeCCHH
Confidence 5789999999995433 221 2333 46888888753
No 70
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=56.44 E-value=54 Score=21.45 Aligned_cols=57 Identities=18% Similarity=0.044 Sum_probs=40.2
Q ss_pred CCCeEEEEEccchHhhhHhhHHHHHHHHHcCC-CCCCeeEEEEeCCCCChHHHHHHHHH
Q 037431 6 ASSLCIAVIGATGELARRKIFQALFALYYSGF-LPENAGIVSYSRKNLIDEDLRSITAS 63 (93)
Q Consensus 6 ~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~-Lp~~~~Iig~aR~~~s~~~~~~~v~~ 63 (93)
.+...+|-|.||.--.=++.+|.|-.+++.-. -..++.|++++... +.+++.+.+++
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~-~~~~~~~~~~~ 73 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR-SEESFNEYFSE 73 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC-CHHHHHHHHhc
Confidence 34678999999988889999999988775421 11368999998765 34555555443
No 71
>PRK06172 short chain dehydrogenase; Provisional
Probab=56.21 E-value=12 Score=26.54 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=27.6
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSI 60 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~ 60 (93)
-+++|.||+|.++..-. .+|.+.| .+++.++|+....++..+.
T Consensus 8 k~ilItGas~~iG~~ia----~~l~~~G-----~~v~~~~r~~~~~~~~~~~ 50 (253)
T PRK06172 8 KVALVTGGAAGIGRATA----LAFAREG-----AKVVVADRDAAGGEETVAL 50 (253)
T ss_pred CEEEEeCCCchHHHHHH----HHHHHcC-----CEEEEEeCCHHHHHHHHHH
Confidence 47899999999997633 2233344 4788888876443343333
No 72
>PRK08017 oxidoreductase; Provisional
Probab=56.15 E-value=11 Score=26.82 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=22.2
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+++|.||||.++..-. -.|.+.| .+++.++|+.
T Consensus 4 ~vlVtGasg~IG~~la----~~l~~~g-----~~v~~~~r~~ 36 (256)
T PRK08017 4 SVLITGCSSGIGLEAA----LELKRRG-----YRVLAACRKP 36 (256)
T ss_pred EEEEECCCChHHHHHH----HHHHHCC-----CEEEEEeCCH
Confidence 5899999999986543 2223334 4678888865
No 73
>PRK09242 tropinone reductase; Provisional
Probab=56.12 E-value=12 Score=26.82 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=26.1
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSI 60 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~ 60 (93)
-+++|.||+|.++..-. ..|.+.| .+|+.++|+.-..++..+.
T Consensus 10 k~~lItGa~~gIG~~~a----~~l~~~G-----~~v~~~~r~~~~~~~~~~~ 52 (257)
T PRK09242 10 QTALITGASKGIGLAIA----REFLGLG-----ADVLIVARDADALAQARDE 52 (257)
T ss_pred CEEEEeCCCchHHHHHH----HHHHHcC-----CEEEEEeCCHHHHHHHHHH
Confidence 36899999999985433 2233344 4688888865333333333
No 74
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=56.01 E-value=43 Score=23.80 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=27.0
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
+++|.||+|.++.--. - .|.+. +.+|+.++|+....++..+.+
T Consensus 4 ~ilItG~~~~IG~~la-~---~l~~~-----g~~vi~~~r~~~~~~~~~~~~ 46 (259)
T PRK12384 4 VAVVIGGGQTLGAFLC-H---GLAEE-----GYRVAVADINSEKAANVAQEI 46 (259)
T ss_pred EEEEECCCcHHHHHHH-H---HHHHC-----CCEEEEEECCHHHHHHHHHHH
Confidence 6899999999885433 1 12223 357888888765444444443
No 75
>PRK08251 short chain dehydrogenase; Provisional
Probab=55.59 E-value=13 Score=26.30 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=26.1
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSI 60 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~ 60 (93)
+++|.||||-++..-. - +|.+.| .+++.++|+....++....
T Consensus 4 ~vlItGas~giG~~la-~---~l~~~g-----~~v~~~~r~~~~~~~~~~~ 45 (248)
T PRK08251 4 KILITGASSGLGAGMA-R---EFAAKG-----RDLALCARRTDRLEELKAE 45 (248)
T ss_pred EEEEECCCCHHHHHHH-H---HHHHcC-----CEEEEEeCCHHHHHHHHHH
Confidence 5899999999986543 2 233334 4677788876444444333
No 76
>PRK06138 short chain dehydrogenase; Provisional
Probab=55.54 E-value=12 Score=26.43 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=23.6
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
-+++|.||+|-++.... .. |.+.| .+++.++|+..
T Consensus 6 k~~lItG~sg~iG~~la-~~---l~~~G-----~~v~~~~r~~~ 40 (252)
T PRK06138 6 RVAIVTGAGSGIGRATA-KL---FAREG-----ARVVVADRDAE 40 (252)
T ss_pred cEEEEeCCCchHHHHHH-HH---HHHCC-----CeEEEecCCHH
Confidence 37899999999996433 22 23333 47888888753
No 77
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=54.84 E-value=12 Score=26.34 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=22.7
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
..+++|+||||..++... ..|.+.| .+++.++|+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a----~~l~~~g-----~~V~l~~R~~ 62 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAA----VLLAREG-----ARVVLVGRDL 62 (194)
T ss_pred CCEEEEECCCCHHHHHHH----HHHHHCC-----CEEEEEcCCH
Confidence 357999999999996443 2333333 3566667764
No 78
>PRK08177 short chain dehydrogenase; Provisional
Probab=54.69 E-value=19 Score=25.29 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=25.3
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDED 56 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~ 56 (93)
+++|.||+|-+++.-. ..|.+.| .+|++++|+....++
T Consensus 3 ~vlItG~sg~iG~~la----~~l~~~G-----~~V~~~~r~~~~~~~ 40 (225)
T PRK08177 3 TALIIGASRGLGLGLV----DRLLERG-----WQVTATVRGPQQDTA 40 (225)
T ss_pred EEEEeCCCchHHHHHH----HHHHhCC-----CEEEEEeCCCcchHH
Confidence 5899999998885532 2233333 578999988755443
No 79
>PRK07063 short chain dehydrogenase; Provisional
Probab=54.55 E-value=13 Score=26.66 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=27.8
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITA 62 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~ 62 (93)
-+++|.||+|-++..-. ..|.+.| .+|+.++|+.-..++..+.+.
T Consensus 8 k~vlVtGas~gIG~~~a----~~l~~~G-----~~vv~~~r~~~~~~~~~~~~~ 52 (260)
T PRK07063 8 KVALVTGAAQGIGAAIA----RAFAREG-----AAVALADLDAALAERAAAAIA 52 (260)
T ss_pred CEEEEECCCchHHHHHH----HHHHHCC-----CEEEEEeCCHHHHHHHHHHHH
Confidence 46899999999885422 2233334 578888886544444444443
No 80
>PRK07062 short chain dehydrogenase; Provisional
Probab=54.50 E-value=15 Score=26.31 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=27.6
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
-+++|.||+|.+++. +.-.| .+. +.+|+.++|+....++..+.+
T Consensus 9 k~~lItGas~giG~~-ia~~l---~~~-----G~~V~~~~r~~~~~~~~~~~~ 52 (265)
T PRK07062 9 RVAVVTGGSSGIGLA-TVELL---LEA-----GASVAICGRDEERLASAEARL 52 (265)
T ss_pred CEEEEeCCCchHHHH-HHHHH---HHC-----CCeEEEEeCCHHHHHHHHHHH
Confidence 368999999999864 22332 233 457888999764444444333
No 81
>PRK07832 short chain dehydrogenase; Provisional
Probab=54.37 E-value=13 Score=26.97 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=23.0
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
+++|.||||.++..-. .. |.+.| .+++.++|+.-
T Consensus 2 ~vlItGas~giG~~la-~~---la~~G-----~~vv~~~r~~~ 35 (272)
T PRK07832 2 RCFVTGAASGIGRATA-LR---LAAQG-----AELFLTDRDAD 35 (272)
T ss_pred EEEEeCCCCHHHHHHH-HH---HHHCC-----CEEEEEeCCHH
Confidence 5799999999986543 22 33344 46788888653
No 82
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=54.12 E-value=72 Score=22.19 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=35.8
Q ss_pred CeEEEEEccchHhhhH--------hhHHHHHHHHHcCCCCCCeeEEEEeCCCC------ChHHHHHHHHHHh
Q 037431 8 SLCIAVIGATGELARR--------KIFQALFALYYSGFLPENAGIVSYSRKNL------IDEDLRSITASVL 65 (93)
Q Consensus 8 ~~~~VIFGatGDLA~R--------KL~PAL~~L~~~g~Lp~~~~Iig~aR~~~------s~~~~~~~v~~~l 65 (93)
++.++=.|-+|+-+.. .-+.-+...... ..+++.-||.+|-.|. +.++|.+.+++-+
T Consensus 41 ~~~viN~Gv~G~tt~~~~~~~~~~~~l~~l~~~l~~-~~~pd~vii~lGtND~~~~~~~~~~~~~~~l~~lv 111 (208)
T cd01839 41 NVRVIEDGLPGRTTVLDDPFFPGRNGLTYLPQALES-HSPLDLVIIMLGTNDLKSYFNLSAAEIAQGLGALV 111 (208)
T ss_pred CeEEEecCcCCcceeccCccccCcchHHHHHHHHHh-CCCCCEEEEeccccccccccCCCHHHHHHHHHHHH
Confidence 4788999999998752 223334443333 2356888998887775 4456666655444
No 83
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=54.07 E-value=65 Score=21.64 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=34.3
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC----ChHHHHHHHHHHh
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL----IDEDLRSITASVL 65 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~----s~~~~~~~v~~~l 65 (93)
+...++-.|.+||-+.- +..-+.+... . ..++.-+|.+|-.+. +.++|.+.+++-+
T Consensus 21 ~~~~v~N~Gi~G~~~~~-~~~~~~~~~~-~-~~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv 80 (171)
T cd04502 21 APLPVVNRGFGGSTLAD-CLHYFDRLVL-P-YQPRRVVLYAGDNDLASGRTPEEVLRDFRELV 80 (171)
T ss_pred CCCceeecCcccchHHH-HHHHHHhhhc-c-CCCCEEEEEEecCcccCCCCHHHHHHHHHHHH
Confidence 45678889999996543 3333433332 2 234788888887664 4556666655554
No 84
>PRK07201 short chain dehydrogenase; Provisional
Probab=53.16 E-value=17 Score=29.94 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=26.7
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRS 59 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~ 59 (93)
+++|.||||.++..-. ..|.+.| .+|+.++|++-..++..+
T Consensus 373 ~vlItGas~giG~~la----~~l~~~G-----~~V~~~~r~~~~~~~~~~ 413 (657)
T PRK07201 373 VVLITGASSGIGRATA----IKVAEAG-----ATVFLVARNGEALDELVA 413 (657)
T ss_pred EEEEeCCCCHHHHHHH----HHHHHCC-----CEEEEEECCHHHHHHHHH
Confidence 6899999999996543 2333444 578888987543333333
No 85
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=52.93 E-value=14 Score=25.94 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=24.6
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDL 57 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~ 57 (93)
.++|.||||.++..-. ..|.+.| .+|+.++|+.....+.
T Consensus 5 ~ilItGas~~iG~~la----~~l~~~g-----~~v~~~~r~~~~~~~~ 43 (250)
T TIGR03206 5 TAIVTGGGGGIGGATC----RRFAEEG-----AKVAVFDLNREAAEKV 43 (250)
T ss_pred EEEEeCCCChHHHHHH----HHHHHCC-----CEEEEecCCHHHHHHH
Confidence 5899999999986543 2223333 4677787765433333
No 86
>PRK07069 short chain dehydrogenase; Validated
Probab=52.92 E-value=18 Score=25.46 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=22.0
Q ss_pred EEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 11 IAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 11 ~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
++|.||+|.++..-. ..|.+.| .+++.++|+.
T Consensus 2 ilVtG~~~~iG~~~a----~~l~~~G-----~~v~~~~r~~ 33 (251)
T PRK07069 2 AFITGAAGGLGRAIA----RRMAEQG-----AKVFLTDIND 33 (251)
T ss_pred EEEECCCChHHHHHH----HHHHHCC-----CEEEEEeCCc
Confidence 689999999997633 2233344 5788888873
No 87
>PRK07814 short chain dehydrogenase; Provisional
Probab=52.74 E-value=15 Score=26.60 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=26.4
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSI 60 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~ 60 (93)
-+++|.||+|-++..-. -.|.+. +.+|+.++|+....++..+.
T Consensus 11 ~~vlItGasggIG~~~a----~~l~~~-----G~~Vi~~~r~~~~~~~~~~~ 53 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIA----LAFAEA-----GADVLIAARTESQLDEVAEQ 53 (263)
T ss_pred CEEEEECCCChHHHHHH----HHHHHC-----CCEEEEEeCCHHHHHHHHHH
Confidence 36899999999987533 112222 35788888875333333333
No 88
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=51.93 E-value=24 Score=26.28 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=25.9
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDE 55 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~ 55 (93)
-.++|.||||-++..-+ . .|...| .+|+++.|+....+
T Consensus 6 ~~vlVTGatG~iG~~l~-~---~L~~~g-----~~V~~~~r~~~~~~ 43 (322)
T PLN02986 6 KLVCVTGASGYIASWIV-K---LLLLRG-----YTVKATVRDLTDRK 43 (322)
T ss_pred CEEEEECCCcHHHHHHH-H---HHHHCC-----CEEEEEECCCcchH
Confidence 46999999999996654 2 334444 46888888765433
No 89
>PRK07109 short chain dehydrogenase; Provisional
Probab=51.69 E-value=18 Score=27.73 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=28.4
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHH
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITA 62 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~ 62 (93)
.-+++|.||||-+++.-. ..|.+.| .+|+.++|+.-..++..+.++
T Consensus 8 ~k~vlITGas~gIG~~la----~~la~~G-----~~Vvl~~R~~~~l~~~~~~l~ 53 (334)
T PRK07109 8 RQVVVITGASAGVGRATA----RAFARRG-----AKVVLLARGEEGLEALAAEIR 53 (334)
T ss_pred CCEEEEECCCCHHHHHHH----HHHHHCC-----CEEEEEECCHHHHHHHHHHHH
Confidence 347999999999986532 2233444 468888887544344444443
No 90
>PRK12939 short chain dehydrogenase; Provisional
Probab=51.32 E-value=17 Score=25.54 Aligned_cols=43 Identities=21% Similarity=0.071 Sum_probs=26.4
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSI 60 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~ 60 (93)
-.++|.||+|-++..-. -.|.+.| .+|+.++|+....++..+.
T Consensus 8 ~~vlItGa~g~iG~~la----~~l~~~G-----~~v~~~~r~~~~~~~~~~~ 50 (250)
T PRK12939 8 KRALVTGAARGLGAAFA----EALAEAG-----ATVAFNDGLAAEARELAAA 50 (250)
T ss_pred CEEEEeCCCChHHHHHH----HHHHHcC-----CEEEEEeCCHHHHHHHHHH
Confidence 46899999999986543 1233334 4688888865433333333
No 91
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.25 E-value=16 Score=25.66 Aligned_cols=43 Identities=14% Similarity=0.029 Sum_probs=26.9
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSI 60 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~ 60 (93)
-.++|.||+|-|+.... .. |... +..|+.++|+....++..+.
T Consensus 8 ~~vlVtG~sg~iG~~l~-~~---L~~~-----G~~Vi~~~r~~~~~~~~~~~ 50 (239)
T PRK07666 8 KNALITGAGRGIGRAVA-IA---LAKE-----GVNVGLLARTEENLKAVAEE 50 (239)
T ss_pred CEEEEEcCCchHHHHHH-HH---HHHC-----CCEEEEEeCCHHHHHHHHHH
Confidence 46899999998886543 22 2233 35788898876444443333
No 92
>PRK07775 short chain dehydrogenase; Provisional
Probab=50.82 E-value=16 Score=26.68 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=22.8
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
+++|.||+|.++..- ...| ...| .+|+.++|+..
T Consensus 12 ~vlVtGa~g~iG~~l-a~~L---~~~G-----~~V~~~~r~~~ 45 (274)
T PRK07775 12 PALVAGASSGIGAAT-AIEL---AAAG-----FPVALGARRVE 45 (274)
T ss_pred EEEEECCCchHHHHH-HHHH---HHCC-----CEEEEEeCCHH
Confidence 689999999998553 2333 3334 46777787643
No 93
>PRK05854 short chain dehydrogenase; Provisional
Probab=50.62 E-value=33 Score=25.89 Aligned_cols=45 Identities=20% Similarity=0.098 Sum_probs=28.2
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITA 62 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~ 62 (93)
-+++|.||||-+++--. ..|.+.| .+|+.++|+.-..++..+.+.
T Consensus 15 k~~lITGas~GIG~~~a----~~La~~G-----~~Vil~~R~~~~~~~~~~~l~ 59 (313)
T PRK05854 15 KRAVVTGASDGLGLGLA----RRLAAAG-----AEVILPVRNRAKGEAAVAAIR 59 (313)
T ss_pred CEEEEeCCCChHHHHHH----HHHHHCC-----CEEEEEeCCHHHHHHHHHHHH
Confidence 36899999998885332 3334444 578888887544444444443
No 94
>PRK07825 short chain dehydrogenase; Provisional
Probab=50.54 E-value=10 Score=27.48 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=22.2
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||||-++..-. - .|.+.| .+++.++|+.
T Consensus 6 ~~ilVtGasggiG~~la-~---~l~~~G-----~~v~~~~r~~ 39 (273)
T PRK07825 6 KVVAITGGARGIGLATA-R---ALAALG-----ARVAIGDLDE 39 (273)
T ss_pred CEEEEeCCCchHHHHHH-H---HHHHCC-----CEEEEEECCH
Confidence 36899999999986543 1 123334 4577777754
No 95
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=50.43 E-value=13 Score=23.99 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=20.6
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-.++|+|| |+.|.||+ ..++..+.+|.-++.+.
T Consensus 8 ~~vlVvGg-G~va~~k~---------~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 8 KRVLVVGG-GPVAARKA---------RLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -EEEEEEE-SHHHHHHH---------HHHCCCTBEEEEEESSE
T ss_pred CEEEEECC-CHHHHHHH---------HHHHhCCCEEEEECCch
Confidence 45778887 99999998 23334445555555543
No 96
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=50.23 E-value=24 Score=26.84 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=25.5
Q ss_pred CCCCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 5 QASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 5 ~~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
....-+++|.||+|=++.... ..| .+.| .+|+++.|+..
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~-~~L---~~~G-----~~V~~~~r~~~ 45 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLV-KLL---LQRG-----YTVHATLRDPA 45 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHH-HHH---HHCC-----CEEEEEeCChH
Confidence 334567999999998886544 332 3333 57888877643
No 97
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=49.35 E-value=74 Score=26.39 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=44.7
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhcccC-CccChhHHHhhcCCceeE
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRID-HLYGSHAAIQIQVPAIQF 88 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~~~~-~~e~~~~~~~~~~~~~~~ 88 (93)
.++|+|+||-...--| .--...|+.|+|+|.+-.. ..+-..+++++.=-++.. ..+.-...++-.++.+++
T Consensus 3 ~i~iLGSTGSIG~qtL-------dVi~~~p~~f~vval~ag~-n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~~~~~~v 74 (385)
T COG0743 3 KLTILGSTGSIGTQTL-------DVIRRNPDKFEVVALAAGK-NVELLAEQIREFKPKYVVIADESAAKELEDLLPGTEV 74 (385)
T ss_pred eEEEEecCCchhHHHH-------HHHHhCCCcEEEEEEecCC-cHHHHHHHHHHhCCceEEecChHHHHHHHhhccCceE
Confidence 5899999999885433 2223346789999998766 666777776664434432 222223466655655554
Q ss_pred e
Q 037431 89 L 89 (93)
Q Consensus 89 ~ 89 (93)
+
T Consensus 75 ~ 75 (385)
T COG0743 75 L 75 (385)
T ss_pred E
Confidence 3
No 98
>PRK05693 short chain dehydrogenase; Provisional
Probab=48.84 E-value=6.7 Score=28.49 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=22.7
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+++|.||||-+++.-. -. |.+. +.+|++++|+.
T Consensus 3 ~vlItGasggiG~~la-~~---l~~~-----G~~V~~~~r~~ 35 (274)
T PRK05693 3 VVLITGCSSGIGRALA-DA---FKAA-----GYEVWATARKA 35 (274)
T ss_pred EEEEecCCChHHHHHH-HH---HHHC-----CCEEEEEeCCH
Confidence 5899999999996443 22 2233 35788888865
No 99
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=48.46 E-value=14 Score=27.74 Aligned_cols=43 Identities=16% Similarity=0.078 Sum_probs=26.2
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHH
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRS 59 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~ 59 (93)
.-+++|.||+|-++..-. -.|.+.| .+|+.++|+.-..++..+
T Consensus 6 ~k~vlVTGas~gIG~~~a----~~L~~~G-----~~V~~~~r~~~~~~~~~~ 48 (322)
T PRK07453 6 KGTVIITGASSGVGLYAA----KALAKRG-----WHVIMACRNLKKAEAAAQ 48 (322)
T ss_pred CCEEEEEcCCChHHHHHH----HHHHHCC-----CEEEEEECCHHHHHHHHH
Confidence 346899999999885432 2333444 467888886533333333
No 100
>PRK06182 short chain dehydrogenase; Validated
Probab=48.25 E-value=7.5 Score=28.23 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=23.3
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||||-+++.-. ..|.+.| .+|++++|+.
T Consensus 4 k~vlItGasggiG~~la----~~l~~~G-----~~V~~~~r~~ 37 (273)
T PRK06182 4 KVALVTGASSGIGKATA----RRLAAQG-----YTVYGAARRV 37 (273)
T ss_pred CEEEEECCCChHHHHHH----HHHHHCC-----CEEEEEeCCH
Confidence 36899999999986532 2233333 5788888864
No 101
>PRK09072 short chain dehydrogenase; Provisional
Probab=48.11 E-value=16 Score=26.25 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=23.1
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLI 53 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s 53 (93)
+++|.||+|-++..-. .. |.+.| .+|+.++|+.-.
T Consensus 7 ~vlItG~s~~iG~~ia-~~---l~~~G-----~~V~~~~r~~~~ 41 (263)
T PRK09072 7 RVLLTGASGGIGQALA-EA---LAAAG-----ARLLLVGRNAEK 41 (263)
T ss_pred EEEEECCCchHHHHHH-HH---HHHCC-----CEEEEEECCHHH
Confidence 6899999999985433 22 22334 578888887533
No 102
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=47.64 E-value=36 Score=25.02 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=24.6
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
+++|.||||=|+...+ . .|.+.|. ..+|+++.|+..
T Consensus 1 ~vlvtGatG~lG~~l~-~---~L~~~g~---~~~V~~l~R~~~ 36 (367)
T TIGR01746 1 TVLLTGATGFLGAYLL-E---ELLRRST---QAKVICLVRAAS 36 (367)
T ss_pred CEEEeccchHHHHHHH-H---HHHhCCC---CCEEEEEEccCC
Confidence 4789999999995433 3 3444442 368999999764
No 103
>PRK08226 short chain dehydrogenase; Provisional
Probab=47.60 E-value=25 Score=25.07 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=24.0
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
.-+++|.||+|-++..-. .. |.+.| .+|+.++|+.
T Consensus 6 ~~~~lItG~s~giG~~la-~~---l~~~G-----~~Vv~~~r~~ 40 (263)
T PRK08226 6 GKTALITGALQGIGEGIA-RV---FARHG-----ANLILLDISP 40 (263)
T ss_pred CCEEEEeCCCChHHHHHH-HH---HHHCC-----CEEEEecCCH
Confidence 357899999999997633 33 23334 4688888865
No 104
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=47.58 E-value=18 Score=25.87 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=22.0
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
.++|.||||-++..-. .. |.+. +.++++++|+.
T Consensus 2 ~vlItGasg~iG~~la-~~---l~~~-----G~~V~~~~r~~ 34 (248)
T PRK10538 2 IVLVTGATAGFGECIT-RR---FIQQ-----GHKVIATGRRQ 34 (248)
T ss_pred EEEEECCCchHHHHHH-HH---HHHC-----CCEEEEEECCH
Confidence 5789999999886532 22 2233 35788888864
No 105
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=47.37 E-value=32 Score=25.61 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=20.9
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRK 50 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~ 50 (93)
.++|.||||-++.... -.|.+.| .+|+++.|.
T Consensus 2 ~vlVtGatG~iG~~l~----~~L~~~g-----~~V~~~~~~ 33 (338)
T PRK10675 2 RVLVTGGSGYIGSHTC----VQLLQNG-----HDVVILDNL 33 (338)
T ss_pred eEEEECCCChHHHHHH----HHHHHCC-----CeEEEEecC
Confidence 5899999999986544 2233334 466666654
No 106
>COG3596 Predicted GTPase [General function prediction only]
Probab=47.09 E-value=23 Score=28.29 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=22.1
Q ss_pred CCCCeEEEEEccchHhhhHhhHHHHHH
Q 037431 5 QASSLCIAVIGATGELARRKIFQALFA 31 (93)
Q Consensus 5 ~~~~~~~VIFGatGDLA~RKL~PAL~~ 31 (93)
...|+++.|.|+|| ..|--|+-|||+
T Consensus 36 ~~~pvnvLi~G~TG-~GKSSliNALF~ 61 (296)
T COG3596 36 EKEPVNVLLMGATG-AGKSSLINALFQ 61 (296)
T ss_pred ccCceeEEEecCCC-CcHHHHHHHHHh
Confidence 45688899999999 688889999993
No 107
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=46.97 E-value=98 Score=21.68 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=40.6
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHc---CC---CCCCeeEEEEeCCCCChHHHHHHHHH
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYS---GF---LPENAGIVSYSRKNLIDEDLRSITAS 63 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~---g~---Lp~~~~Iig~aR~~~s~~~~~~~v~~ 63 (93)
....+|-|.||-==.=|+.+|.|-.+|+. .. -.+++.||+++... +.+++.+.+.+
T Consensus 25 gk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~-~~~~~~~f~~~ 86 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ-SEQQQESFLKD 86 (146)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC-CHHHHHHHHHH
Confidence 46789999999888899999999888752 11 12369999999554 45556665544
No 108
>PRK08628 short chain dehydrogenase; Provisional
Probab=46.90 E-value=25 Score=25.06 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=21.8
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
+++|.||||.++..-. . .|.+.| .+++.++|+..
T Consensus 9 ~ilItGasggiG~~la-~---~l~~~G-----~~v~~~~r~~~ 42 (258)
T PRK08628 9 VVIVTGGASGIGAAIS-L---RLAEEG-----AIPVIFGRSAP 42 (258)
T ss_pred EEEEeCCCChHHHHHH-H---HHHHcC-----CcEEEEcCChh
Confidence 6899999999986543 2 223344 35566677653
No 109
>PRK09135 pteridine reductase; Provisional
Probab=46.81 E-value=23 Score=24.70 Aligned_cols=35 Identities=6% Similarity=0.005 Sum_probs=23.6
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
-+++|.||+|-+++... -+|.+. +.++++++|+..
T Consensus 7 ~~vlItGa~g~iG~~l~----~~l~~~-----g~~v~~~~r~~~ 41 (249)
T PRK09135 7 KVALITGGARRIGAAIA----RTLHAA-----GYRVAIHYHRSA 41 (249)
T ss_pred CEEEEeCCCchHHHHHH----HHHHHC-----CCEEEEEcCCCH
Confidence 46999999999985432 122233 467888888753
No 110
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=46.54 E-value=22 Score=25.36 Aligned_cols=40 Identities=18% Similarity=0.013 Sum_probs=25.2
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDL 57 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~ 57 (93)
-.++|.||+|.++..-. ..|.+.| .+++.++|+....++.
T Consensus 10 k~~lItGas~giG~~ia----~~L~~~G-----~~vvl~~r~~~~~~~~ 49 (254)
T PRK08085 10 KNILITGSAQGIGFLLA----TGLAEYG-----AEIIINDITAERAELA 49 (254)
T ss_pred CEEEEECCCChHHHHHH----HHHHHcC-----CEEEEEcCCHHHHHHH
Confidence 46899999999995433 2334444 4677788765333333
No 111
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=46.48 E-value=78 Score=20.40 Aligned_cols=57 Identities=12% Similarity=-0.034 Sum_probs=38.6
Q ss_pred CCeEEEEEccchHhh-hHhhHHHHHHHHHcCC-CC-CCeeEEEEeCCCC--ChHHHHHHHHH
Q 037431 7 SSLCIAVIGATGELA-RRKIFQALFALYYSGF-LP-ENAGIVSYSRKNL--IDEDLRSITAS 63 (93)
Q Consensus 7 ~~~~~VIFGatGDLA-~RKL~PAL~~L~~~g~-Lp-~~~~Iig~aR~~~--s~~~~~~~v~~ 63 (93)
....+|.|.+++.-. -+..+|.|-+++..=. -. +++.|++++-.+. +.+...+.+++
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~ 83 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKA 83 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999875 7778899999875421 11 2599999987653 33455555444
No 112
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=45.92 E-value=18 Score=26.31 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=12.5
Q ss_pred EEEEccchHhhhHhh
Q 037431 11 IAVIGATGELARRKI 25 (93)
Q Consensus 11 ~VIFGatGDLA~RKL 25 (93)
++|+||||-++..-.
T Consensus 2 vlV~GatG~iG~~l~ 16 (328)
T TIGR01179 2 ILVTGGAGYIGSHTV 16 (328)
T ss_pred EEEeCCCCHHHHHHH
Confidence 689999999987654
No 113
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=45.82 E-value=95 Score=25.13 Aligned_cols=59 Identities=17% Similarity=0.100 Sum_probs=43.2
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhcccC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRID 70 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~~~~ 70 (93)
..-|+.|=|||=++|-+ =+|-.|.+.. .++.+|+.-=-=+..+++|++.|.++-++...
T Consensus 146 ~~tIlvGNSgd~SN~Hi-e~L~~l~~~~--~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~ 204 (322)
T PRK02797 146 KMTILVGNSGDRSNRHI-EALRALHQQF--GDNVKIIVPMGYPANNQAYIEEVRQAGLALFG 204 (322)
T ss_pred ceEEEEeCCCCCcccHH-HHHHHHHHHh--CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcC
Confidence 45678999999999998 7888887653 45788875432233568999999987765443
No 114
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=45.53 E-value=14 Score=30.88 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=10.7
Q ss_pred CeEEEEEccchH
Q 037431 8 SLCIAVIGATGE 19 (93)
Q Consensus 8 ~~~~VIFGatGD 19 (93)
..++|||||||=
T Consensus 5 ~yDvVIyGASGf 16 (423)
T KOG2733|consen 5 RYDVVIYGASGF 16 (423)
T ss_pred eeeEEEEccccc
Confidence 789999999994
No 115
>PRK06101 short chain dehydrogenase; Provisional
Probab=44.43 E-value=20 Score=25.52 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=21.7
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+++|.||||-++..-. -. |.+. +.+++.++|+.
T Consensus 3 ~vlItGas~giG~~la-~~---L~~~-----G~~V~~~~r~~ 35 (240)
T PRK06101 3 AVLITGATSGIGKQLA-LD---YAKQ-----GWQVIACGRNQ 35 (240)
T ss_pred EEEEEcCCcHHHHHHH-HH---HHhC-----CCEEEEEECCH
Confidence 5789999999985322 11 2222 45788888864
No 116
>PRK05867 short chain dehydrogenase; Provisional
Probab=44.26 E-value=24 Score=25.21 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=25.9
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSI 60 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~ 60 (93)
+++|.||+|.++..-. ..|.+.| .+|+.++|+.-..++..+.
T Consensus 11 ~vlVtGas~gIG~~ia----~~l~~~G-----~~V~~~~r~~~~~~~~~~~ 52 (253)
T PRK05867 11 RALITGASTGIGKRVA----LAYVEAG-----AQVAIAARHLDALEKLADE 52 (253)
T ss_pred EEEEECCCchHHHHHH----HHHHHCC-----CEEEEEcCCHHHHHHHHHH
Confidence 6899999999985433 2333444 4788888865333333333
No 117
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=44.23 E-value=34 Score=26.90 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=25.3
Q ss_pred EEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChH
Q 037431 11 IAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDE 55 (93)
Q Consensus 11 ~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~ 55 (93)
++|+|++|=|+.-.. .+ ++....|++++|.+++-.
T Consensus 3 iLi~G~~GqLG~~L~-----~~-----l~~~~~v~a~~~~~~Dit 37 (281)
T COG1091 3 ILITGANGQLGTELR-----RA-----LPGEFEVIATDRAELDIT 37 (281)
T ss_pred EEEEcCCChHHHHHH-----HH-----hCCCceEEeccCcccccc
Confidence 899999999986432 22 224689999998876544
No 118
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=44.14 E-value=17 Score=26.65 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=23.2
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
+++|.||+|-++.... ..| .+.| ..|++++|+..
T Consensus 2 ~vlItG~~G~iG~~l~-~~L---~~~g-----~~V~~~~r~~~ 35 (328)
T TIGR03466 2 KVLVTGATGFVGSAVV-RLL---LEQG-----EEVRVLVRPTS 35 (328)
T ss_pred eEEEECCccchhHHHH-HHH---HHCC-----CEEEEEEecCc
Confidence 5799999999997643 443 3334 46778887643
No 119
>PRK08264 short chain dehydrogenase; Validated
Probab=44.10 E-value=19 Score=25.28 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=23.2
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||||-+++.-. .. |.+.|. -+|+.++|+.
T Consensus 7 ~~vlItGgsg~iG~~la-~~---l~~~G~----~~V~~~~r~~ 41 (238)
T PRK08264 7 KVVLVTGANRGIGRAFV-EQ---LLARGA----AKVYAAARDP 41 (238)
T ss_pred CEEEEECCCchHHHHHH-HH---HHHCCc----ccEEEEecCh
Confidence 46999999999996543 22 233442 2677777764
No 120
>PF11313 DUF3116: Protein of unknown function (DUF3116); InterPro: IPR021464 This family of proteins with unknown function appears to be restricted to Bacillales.
Probab=44.09 E-value=10 Score=24.99 Aligned_cols=30 Identities=7% Similarity=0.196 Sum_probs=27.0
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLP 39 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp 39 (93)
.++.|++.+|.++..|+=++|+|...|.+-
T Consensus 29 e~~~~~~~~~~TKNelL~~vYWLE~ngyI~ 58 (85)
T PF11313_consen 29 EFIDFPGAYDFTKNELLYTVYWLEENGYIF 58 (85)
T ss_pred HHHhccccccccHHHHHHHHHHHhhcCeeE
Confidence 367899999999999999999999999863
No 121
>PF05741 zf-nanos: Nanos RNA binding domain; InterPro: IPR024161 Nanos is a highly conserved RNA-binding protein in higher eukaryotes and functions as a key regulatory protein in translational control using a 3' untranslated region during the development and maintenance of germ cells. Nanos comprises a non-conserved amino-terminus and highly conserved carboxy- terminal regions. The C-terminal region has two conserved Cys-Cys-His-Cys (CCHC)-type zinc-finger motifs that are indispensable for nanos function [, , ]. The structure of the nanos-type zinc finger is composed of two independent zinc-finger (ZF) lobes, the N-terminal ZF1 and the C-terminal ZF2, which are connected by a linker helix []. These lobes create a large cleft. Zinc ions in ZF1 and ZF2 are bound to the CCHC motif by tetrahedral coordination.; PDB: 3ALR_B.
Probab=44.09 E-value=8.9 Score=23.38 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=4.6
Q ss_pred EEccchHhhhHh
Q 037431 13 VIGATGELARRK 24 (93)
Q Consensus 13 IFGatGDLA~RK 24 (93)
+.|||||.|+-.
T Consensus 38 ~CgAtGd~AHT~ 49 (55)
T PF05741_consen 38 ICGATGDNAHTI 49 (55)
T ss_dssp TT---GGG---G
T ss_pred CCcCcCcccccc
Confidence 579999999743
No 122
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.99 E-value=24 Score=24.65 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=23.9
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
-+++|.||+|-++..-. . .|.+.| .+|++++|++.
T Consensus 6 ~~vlItGa~g~iG~~~a-~---~l~~~G-----~~V~~~~r~~~ 40 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVA-Y---FALKEG-----AQVCINSRNEN 40 (238)
T ss_pred cEEEEECCCchHHHHHH-H---HHHHCC-----CEEEEEeCCHH
Confidence 37899999999985443 2 223334 57889998753
No 123
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=43.90 E-value=36 Score=23.99 Aligned_cols=34 Identities=29% Similarity=0.296 Sum_probs=22.6
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||+|.++..-. ..|.+.| .+++.++|+.
T Consensus 6 k~vlItGas~gIG~~ia----~~l~~~G-----~~vi~~~r~~ 39 (248)
T TIGR01832 6 KVALVTGANTGLGQGIA----VGLAEAG-----ADIVGAGRSE 39 (248)
T ss_pred CEEEEECCCchHHHHHH----HHHHHCC-----CEEEEEcCch
Confidence 36899999999875332 2233333 5788888865
No 124
>PRK06924 short chain dehydrogenase; Provisional
Probab=43.76 E-value=23 Score=25.03 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=21.9
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
.++|.||+|-+++... .. |.+.| .+|+.++|+.
T Consensus 3 ~vlItGasggiG~~ia-~~---l~~~g-----~~V~~~~r~~ 35 (251)
T PRK06924 3 YVIITGTSQGLGEAIA-NQ---LLEKG-----THVISISRTE 35 (251)
T ss_pred EEEEecCCchHHHHHH-HH---HHhcC-----CEEEEEeCCc
Confidence 5889999999886543 22 22333 4678888865
No 125
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.66 E-value=25 Score=24.61 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=22.9
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
-+++|.||+|.++..-. .. |.+.| .+|+.++|+..
T Consensus 6 ~~~lItG~~g~iG~~~a-~~---l~~~G-----~~vi~~~r~~~ 40 (253)
T PRK08217 6 KVIVITGGAQGLGRAMA-EY---LAQKG-----AKLALIDLNQE 40 (253)
T ss_pred CEEEEECCCchHHHHHH-HH---HHHCC-----CEEEEEeCCHH
Confidence 46889999999986522 22 22333 46788888753
No 126
>PRK07890 short chain dehydrogenase; Provisional
Probab=43.34 E-value=23 Score=25.05 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=27.1
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
-+++|.||||=++..-. . .|.+.| .+|+.++|+....++..+.+
T Consensus 6 k~vlItGa~~~IG~~la-~---~l~~~G-----~~V~~~~r~~~~~~~~~~~~ 49 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLA-V---RAARAG-----ADVVLAARTAERLDEVAAEI 49 (258)
T ss_pred CEEEEECCCCcHHHHHH-H---HHHHcC-----CEEEEEeCCHHHHHHHHHHH
Confidence 46899999998885432 1 223344 47888888764444444443
No 127
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=43.20 E-value=1.3e+02 Score=22.64 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=26.1
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDE 55 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~ 55 (93)
.++|+||+|=|+.. |.+.+.. .+..++++.|.+.+-.
T Consensus 2 riLI~GasG~lG~~-----l~~~l~~----~~~~v~~~~r~~~dl~ 38 (286)
T PF04321_consen 2 RILITGASGFLGSA-----LARALKE----RGYEVIATSRSDLDLT 38 (286)
T ss_dssp EEEEETTTSHHHHH-----HHHHHTT----TSEEEEEESTTCS-TT
T ss_pred EEEEECCCCHHHHH-----HHHHHhh----CCCEEEEeCchhcCCC
Confidence 68999999999854 4444443 3578999988876543
No 128
>PRK05855 short chain dehydrogenase; Validated
Probab=42.97 E-value=18 Score=28.71 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=27.7
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHH
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSI 60 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~ 60 (93)
.-+++|.||||-+++... .+|.+.| .+|+.++|+.-..++..+.
T Consensus 315 ~~~~lv~G~s~giG~~~a----~~l~~~G-----~~v~~~~r~~~~~~~~~~~ 358 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETA----LAFAREG-----AEVVASDIDEAAAERTAEL 358 (582)
T ss_pred CCEEEEECCcCHHHHHHH----HHHHHCC-----CEEEEEeCCHHHHHHHHHH
Confidence 346899999999997543 2333334 4688888875433343333
No 129
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=42.49 E-value=27 Score=25.26 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=23.3
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
.-+++|.||+|.++..-. .. |.+.| .+|+.++|+.
T Consensus 10 ~k~vlVtGas~giG~~ia-~~---l~~~G-----~~V~~~~r~~ 44 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMA-KE---LARAG-----AKVAILDRNQ 44 (278)
T ss_pred CCEEEEeCCCchHHHHHH-HH---HHHCC-----CEEEEEeCCH
Confidence 346899999999985443 33 23444 4677788864
No 130
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=42.10 E-value=1.2e+02 Score=21.40 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=37.3
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHH
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITAS 63 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~ 63 (93)
+...+|.|-+|.==.=++.+|.+-.+++.. +..+++++.. +.++..+++++
T Consensus 74 gk~vvl~F~atwCp~C~~~lp~l~~~~~~~----~~~vv~Is~~--~~~~~~~~~~~ 124 (189)
T TIGR02661 74 GRPTLLMFTAPSCPVCDKLFPIIKSIARAE----ETDVVMISDG--TPAEHRRFLKD 124 (189)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHhc----CCcEEEEeCC--CHHHHHHHHHh
Confidence 455788888888888899999999887642 4678888743 45666666554
No 131
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.64 E-value=82 Score=22.09 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=12.9
Q ss_pred eEEEEEccchHhhhH
Q 037431 9 LCIAVIGATGELARR 23 (93)
Q Consensus 9 ~~~VIFGatGDLA~R 23 (93)
-+++|.||||.++..
T Consensus 5 ~~vlItGa~g~iG~~ 19 (250)
T PRK08063 5 KVALVTGSSRGIGKA 19 (250)
T ss_pred CEEEEeCCCchHHHH
Confidence 479999999999865
No 132
>PRK08267 short chain dehydrogenase; Provisional
Probab=41.55 E-value=24 Score=25.20 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=22.4
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
+++|.||||-++.... ..|.+.| .+++.++|+.-
T Consensus 3 ~vlItGasg~iG~~la----~~l~~~G-----~~V~~~~r~~~ 36 (260)
T PRK08267 3 SIFITGAASGIGRATA----LLFAAEG-----WRVGAYDINEA 36 (260)
T ss_pred EEEEeCCCchHHHHHH----HHHHHCC-----CeEEEEeCCHH
Confidence 5799999999886543 2233444 46777777653
No 133
>PRK05884 short chain dehydrogenase; Provisional
Probab=41.38 E-value=15 Score=26.19 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=21.4
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
.++|.||+|.+++.-. .. |.+.| .+++.++|+.
T Consensus 2 ~vlItGas~giG~~ia-~~---l~~~g-----~~v~~~~r~~ 34 (223)
T PRK05884 2 EVLVTGGDTDLGRTIA-EG---FRNDG-----HKVTLVGARR 34 (223)
T ss_pred eEEEEeCCchHHHHHH-HH---HHHCC-----CEEEEEeCCH
Confidence 4799999999986532 22 22333 5677788764
No 134
>PLN02583 cinnamoyl-CoA reductase
Probab=41.12 E-value=31 Score=25.74 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=23.6
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
.-.++|.||||-+++.-. .. |.+.| .+|+++.|+.
T Consensus 6 ~k~vlVTGatG~IG~~lv-~~---Ll~~G-----~~V~~~~R~~ 40 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLV-KR---LLSRG-----YTVHAAVQKN 40 (297)
T ss_pred CCEEEEECCCCHHHHHHH-HH---HHhCC-----CEEEEEEcCc
Confidence 446899999999986544 22 23334 5788888753
No 135
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=41.04 E-value=31 Score=23.92 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=20.9
Q ss_pred EEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 11 IAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 11 ~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
++|.||+|-++..-. . .|.+.| .++++++|+.
T Consensus 1 vlItG~~g~iG~~la-~---~l~~~G-----~~v~~~~r~~ 32 (239)
T TIGR01830 1 ALVTGASRGIGRAIA-L---KLAKEG-----AKVIITYRSS 32 (239)
T ss_pred CEEECCCcHHHHHHH-H---HHHHCC-----CEEEEEeCCc
Confidence 478999998875433 2 223334 4688888875
No 136
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=41.01 E-value=41 Score=23.84 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=25.6
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDED 56 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~ 56 (93)
.++|+||||-+...-+ +.| ... ...|.+..|+.-....
T Consensus 2 ~ilV~GatG~~G~~~~-~~L---~~~-----~~~v~~~~r~~~~~~~ 39 (275)
T COG0702 2 KILVTGATGFVGGAVV-REL---LAR-----GHEVRAAVRNPEAAAA 39 (275)
T ss_pred eEEEEecccchHHHHH-HHH---HhC-----CCEEEEEEeCHHHHHh
Confidence 4899999999997665 333 222 5678888887543333
No 137
>PRK08265 short chain dehydrogenase; Provisional
Probab=40.75 E-value=30 Score=25.02 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=23.6
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
-+++|.||||.+++.-. . .|.+.| .+++.++|+..
T Consensus 7 k~vlItGas~gIG~~ia-~---~l~~~G-----~~V~~~~r~~~ 41 (261)
T PRK08265 7 KVAIVTGGATLIGAAVA-R---ALVAAG-----ARVAIVDIDAD 41 (261)
T ss_pred CEEEEECCCChHHHHHH-H---HHHHCC-----CEEEEEeCCHH
Confidence 37899999999986544 2 223344 46777888653
No 138
>PRK06953 short chain dehydrogenase; Provisional
Probab=40.69 E-value=27 Score=24.42 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=22.4
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
+++|.||+|.++..-. ..| .+.| .+++.++|+..
T Consensus 3 ~vlvtG~sg~iG~~la-~~L---~~~G-----~~v~~~~r~~~ 36 (222)
T PRK06953 3 TVLIVGASRGIGREFV-RQY---RADG-----WRVIATARDAA 36 (222)
T ss_pred eEEEEcCCCchhHHHH-HHH---HhCC-----CEEEEEECCHH
Confidence 5789999999886543 332 2333 56788888643
No 139
>PRK06194 hypothetical protein; Provisional
Probab=40.41 E-value=35 Score=24.74 Aligned_cols=34 Identities=12% Similarity=-0.027 Sum_probs=22.3
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||+|-+++... -.|.+.| .+++.++|+.
T Consensus 7 k~vlVtGasggIG~~la----~~l~~~G-----~~V~~~~r~~ 40 (287)
T PRK06194 7 KVAVITGAASGFGLAFA----RIGAALG-----MKLVLADVQQ 40 (287)
T ss_pred CEEEEeCCccHHHHHHH----HHHHHCC-----CEEEEEeCCh
Confidence 36899999999986533 1233344 4677777754
No 140
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=40.03 E-value=91 Score=25.66 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=30.4
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITAS 63 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~ 63 (93)
.++|+|+||-.+.--| -.+ ...|+.++|+|++-.. ..+...+.+++
T Consensus 3 ~VaILGsTGSIG~~tL-~vi------~~~p~~f~VvaLaa~~-n~~~l~~q~~~ 48 (385)
T PRK05447 3 RITILGSTGSIGTQTL-DVI------RRNPDRFRVVALSAGK-NVELLAEQARE 48 (385)
T ss_pred eEEEEcCChHHHHHHH-HHH------HhCccccEEEEEEcCC-CHHHHHHHHHH
Confidence 5899999999987633 222 2356789999998422 34555555544
No 141
>PRK07023 short chain dehydrogenase; Provisional
Probab=39.57 E-value=27 Score=24.69 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=21.9
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+++|.||||-++..-. .+|.+.| .+++.++|+.
T Consensus 3 ~vlItGasggiG~~ia----~~l~~~G-----~~v~~~~r~~ 35 (243)
T PRK07023 3 RAIVTGHSRGLGAALA----EQLLQPG-----IAVLGVARSR 35 (243)
T ss_pred eEEEecCCcchHHHHH----HHHHhCC-----CEEEEEecCc
Confidence 6899999999986443 2233334 4677777764
No 142
>PRK06179 short chain dehydrogenase; Provisional
Probab=39.38 E-value=66 Score=23.08 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=21.5
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRK 50 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~ 50 (93)
.++|.||||-++..-. - .|.+.| .+|++++|+
T Consensus 6 ~vlVtGasg~iG~~~a-~---~l~~~g-----~~V~~~~r~ 37 (270)
T PRK06179 6 VALVTGASSGIGRATA-E---KLARAG-----YRVFGTSRN 37 (270)
T ss_pred EEEEecCCCHHHHHHH-H---HHHHCC-----CEEEEEeCC
Confidence 6899999999986433 2 223333 567778876
No 143
>PRK08862 short chain dehydrogenase; Provisional
Probab=39.34 E-value=98 Score=22.22 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=27.1
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
-.++|.||++.+++.-. ..|.+.| .+|+.++|+.-..++..+.+
T Consensus 6 k~~lVtGas~GIG~aia----~~la~~G-----~~V~~~~r~~~~l~~~~~~i 49 (227)
T PRK08862 6 SIILITSAGSVLGRTIS----CHFARLG-----ATLILCDQDQSALKDTYEQC 49 (227)
T ss_pred eEEEEECCccHHHHHHH----HHHHHCC-----CEEEEEcCCHHHHHHHHHHH
Confidence 36899999999975422 2233334 57888888764444444443
No 144
>PRK08219 short chain dehydrogenase; Provisional
Probab=39.30 E-value=21 Score=24.63 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=21.1
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+++|.||+|-|+..-. ..| .+ + .++++++|+.
T Consensus 5 ~vlVtG~~g~iG~~l~-~~l---~~-----~-~~V~~~~r~~ 36 (227)
T PRK08219 5 TALITGASRGIGAAIA-REL---AP-----T-HTLLLGGRPA 36 (227)
T ss_pred EEEEecCCcHHHHHHH-HHH---Hh-----h-CCEEEEeCCH
Confidence 6899999998884432 222 11 1 4578888875
No 145
>PRK06123 short chain dehydrogenase; Provisional
Probab=39.23 E-value=1.1e+02 Score=21.33 Aligned_cols=15 Identities=13% Similarity=0.337 Sum_probs=12.8
Q ss_pred EEEEEccchHhhhHh
Q 037431 10 CIAVIGATGELARRK 24 (93)
Q Consensus 10 ~~VIFGatGDLA~RK 24 (93)
+++|.||||-|+..-
T Consensus 4 ~~lVtG~~~~iG~~~ 18 (248)
T PRK06123 4 VMIITGASRGIGAAT 18 (248)
T ss_pred EEEEECCCchHHHHH
Confidence 689999999999753
No 146
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=39.01 E-value=25 Score=24.81 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=21.4
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||+|.++..-. .. |.+.| .++++++|+.
T Consensus 9 k~vlItGas~~iG~~la-~~---l~~~G-----~~v~~~~~~~ 42 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVA-LA---FVEAG-----AKVIGFDQAF 42 (252)
T ss_pred CEEEEeCCCchHHHHHH-HH---HHHCC-----CEEEEEecch
Confidence 36889999999986543 22 23333 4566666644
No 147
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=38.97 E-value=23 Score=27.96 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=23.0
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
..++|.||||-++..-. ..| .+.| ..|+++.|+.
T Consensus 61 ~kVLVtGatG~IG~~l~-~~L---l~~G-----~~V~~l~R~~ 94 (390)
T PLN02657 61 VTVLVVGATGYIGKFVV-REL---VRRG-----YNVVAVAREK 94 (390)
T ss_pred CEEEEECCCcHHHHHHH-HHH---HHCC-----CEEEEEEech
Confidence 46899999999986543 332 3334 4677777765
No 148
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=38.84 E-value=94 Score=20.54 Aligned_cols=44 Identities=11% Similarity=0.140 Sum_probs=31.6
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHH
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSI 60 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~ 60 (93)
....+||+.|-||++ |++-.|-+.| .+++.++.......+++..
T Consensus 99 ~~d~ivLvSgD~Df~-----~~i~~lr~~G-----~~V~v~~~~~~~s~~L~~~ 142 (149)
T cd06167 99 RIDTIVLVSGDSDFV-----PLVERLRELG-----KRVIVVGFEAKTSRELRKA 142 (149)
T ss_pred CCCEEEEEECCccHH-----HHHHHHHHcC-----CEEEEEccCccChHHHHHh
Confidence 456788988899986 9999998876 4666666665555555554
No 149
>PRK06196 oxidoreductase; Provisional
Probab=38.37 E-value=29 Score=26.03 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=24.0
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
-+++|.||||-++..-. ..|.+.| .+|+.++|+.-
T Consensus 27 k~vlITGasggIG~~~a----~~L~~~G-----~~Vv~~~R~~~ 61 (315)
T PRK06196 27 KTAIVTGGYSGLGLETT----RALAQAG-----AHVIVPARRPD 61 (315)
T ss_pred CEEEEeCCCchHHHHHH----HHHHHCC-----CEEEEEeCCHH
Confidence 46999999999885443 2233444 57888888753
No 150
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=38.35 E-value=44 Score=25.29 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=20.8
Q ss_pred CCCeEEEEEccchHhhhHhhHHHHHHHHHc
Q 037431 6 ASSLCIAVIGATGELARRKIFQALFALYYS 35 (93)
Q Consensus 6 ~~~~~~VIFGatGDLA~RKL~PAL~~L~~~ 35 (93)
..+.+++|+||+|. ..=..+=.++.+++.
T Consensus 90 ~g~d~i~i~Ga~GG-R~DH~l~nl~ll~~~ 118 (212)
T COG1564 90 RGADEIVILGALGG-RLDHALANLFLLLRP 118 (212)
T ss_pred cCCCEEEEEecCCC-hHHHHHHHHHHHHhh
Confidence 34678999999998 555566666666655
No 151
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=38.15 E-value=1.4e+02 Score=22.09 Aligned_cols=59 Identities=19% Similarity=0.102 Sum_probs=34.3
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCCh----HHHHHHHHHHhhc
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLID----EDLRSITASVLSC 67 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~----~~~~~~v~~~l~~ 67 (93)
.+--+..|.+|.-=..=.|.=++-.+.+.|+ | .|+|+|-.=++.++ ++..+++....++
T Consensus 100 ~p~aiwgfngterPGaVyLaAa~aa~~Q~Gi-p-~f~IyG~~vqD~~D~~ip~dV~eKll~farA 162 (171)
T PF07881_consen 100 TPKAIWGFNGTERPGAVYLAAALAAHNQKGI-P-AFRIYGHDVQDADDTSIPEDVQEKLLRFARA 162 (171)
T ss_dssp S-EEEEE---SSS-HHHHHHHHHHHHHHCT-----EEEE-SS---TT--S--HHHHHHHHHHHHH
T ss_pred CCccEEeecCCCCCcHHHHHHHHHHHhcCCC-c-ceeeccccccCCCCCcCcHHHHHHHHHHHHH
Confidence 3456788888866666678888889999995 4 69999988888888 5666666555543
No 152
>PLN02240 UDP-glucose 4-epimerase
Probab=37.74 E-value=56 Score=24.42 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=21.9
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-.++|.||||-++.... ..| ...| ..|++++|..
T Consensus 6 ~~vlItGatG~iG~~l~-~~L---~~~g-----~~V~~~~~~~ 39 (352)
T PLN02240 6 RTILVTGGAGYIGSHTV-LQL---LLAG-----YKVVVIDNLD 39 (352)
T ss_pred CEEEEECCCChHHHHHH-HHH---HHCC-----CEEEEEeCCC
Confidence 36899999999876543 333 3333 4677776654
No 153
>PRK07576 short chain dehydrogenase; Provisional
Probab=37.58 E-value=35 Score=24.76 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=22.6
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||+|.++.--. -.|.+. +.+++.++|+.
T Consensus 10 k~ilItGasggIG~~la----~~l~~~-----G~~V~~~~r~~ 43 (264)
T PRK07576 10 KNVVVVGGTSGINLGIA----QAFARA-----GANVAVASRSQ 43 (264)
T ss_pred CEEEEECCCchHHHHHH----HHHHHC-----CCEEEEEeCCH
Confidence 36899999999986432 112223 45688888875
No 154
>PLN02650 dihydroflavonol-4-reductase
Probab=37.05 E-value=54 Score=24.79 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=24.0
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLI 53 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s 53 (93)
+++|.||||=++.... ..| ... +.+|+++.|+...
T Consensus 7 ~iLVTGatGfIGs~l~-~~L---~~~-----G~~V~~~~r~~~~ 41 (351)
T PLN02650 7 TVCVTGASGFIGSWLV-MRL---LER-----GYTVRATVRDPAN 41 (351)
T ss_pred EEEEeCCcHHHHHHHH-HHH---HHC-----CCEEEEEEcCcch
Confidence 6999999999987644 333 233 3578888876543
No 155
>PRK12827 short chain dehydrogenase; Provisional
Probab=36.98 E-value=58 Score=22.64 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=21.3
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
-.++|.||+|-++.... . .|...| ..++.++|...
T Consensus 7 ~~ilItGasg~iG~~la-~---~l~~~g-----~~v~~~~~~~~ 41 (249)
T PRK12827 7 RRVLITGGSGGLGRAIA-V---RLAADG-----ADVIVLDIHPM 41 (249)
T ss_pred CEEEEECCCChHHHHHH-H---HHHHCC-----CeEEEEcCccc
Confidence 46899999999985322 2 222333 45777666443
No 156
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=36.79 E-value=95 Score=22.20 Aligned_cols=47 Identities=19% Similarity=0.165 Sum_probs=26.0
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
.++|.||+|-++..-. -.|-.. ...+..+|+.++|+.-..++..+.+
T Consensus 2 ~vlItGas~GIG~~~a-~~la~~----~~~~g~~V~~~~r~~~~~~~~~~~l 48 (256)
T TIGR01500 2 VCLVTGASRGFGRTIA-QELAKC----LKSPGSVLVLSARNDEALRQLKAEI 48 (256)
T ss_pred EEEEecCCCchHHHHH-HHHHHh----hccCCcEEEEEEcCHHHHHHHHHHH
Confidence 4789999999885322 222111 1112467788888654334444433
No 157
>PRK06198 short chain dehydrogenase; Provisional
Probab=36.66 E-value=35 Score=24.26 Aligned_cols=36 Identities=28% Similarity=0.215 Sum_probs=23.0
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
-+++|.||+|-++..-. ..|.+.|. ..|+.++|+..
T Consensus 7 k~vlItGa~g~iG~~la----~~l~~~G~----~~V~~~~r~~~ 42 (260)
T PRK06198 7 KVALVTGGTQGLGAAIA----RAFAERGA----AGLVICGRNAE 42 (260)
T ss_pred cEEEEeCCCchHHHHHH----HHHHHCCC----CeEEEEcCCHH
Confidence 35889999999886443 23334442 13888888643
No 158
>PRK08589 short chain dehydrogenase; Validated
Probab=36.65 E-value=43 Score=24.39 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=21.8
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRK 50 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~ 50 (93)
+++|.||+|.+++--. -.|.+.| .+|+.++|+
T Consensus 8 ~vlItGas~gIG~aia----~~l~~~G-----~~vi~~~r~ 39 (272)
T PRK08589 8 VAVITGASTGIGQASA----IALAQEG-----AYVLAVDIA 39 (272)
T ss_pred EEEEECCCchHHHHHH----HHHHHCC-----CEEEEEeCc
Confidence 6899999999985322 2233333 578888887
No 159
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=36.64 E-value=1.2e+02 Score=19.55 Aligned_cols=44 Identities=14% Similarity=0.066 Sum_probs=33.9
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
.++.++.|-+++--.=+.-+|.|..++.+-. ..++.||+++..+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~-~~~v~vv~V~~~~ 67 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELD-ALGVELVAVGPES 67 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHH-hcCeEEEEEeCCC
Confidence 4566777788888888888999999886532 3468999998654
No 160
>PRK07577 short chain dehydrogenase; Provisional
Probab=36.54 E-value=31 Score=24.01 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=21.6
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
.++|.||||-++..-. ..|.+.| .++++++|+.
T Consensus 5 ~vlItG~s~~iG~~ia----~~l~~~G-----~~v~~~~r~~ 37 (234)
T PRK07577 5 TVLVTGATKGIGLALS----LRLANLG-----HQVIGIARSA 37 (234)
T ss_pred EEEEECCCCcHHHHHH----HHHHHCC-----CEEEEEeCCc
Confidence 5789999999987432 2223334 4677777754
No 161
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=36.51 E-value=33 Score=24.48 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=22.6
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
-+++|.||+|.++..-. .. |.+.| .+|+.++|+..
T Consensus 7 ~~vlItGas~~iG~~ia-~~---l~~~G-----~~v~~~~r~~~ 41 (257)
T PRK07067 7 KVALLTGAASGIGEAVA-ER---YLAEG-----ARVVIADIKPA 41 (257)
T ss_pred CEEEEeCCCchHHHHHH-HH---HHHcC-----CEEEEEcCCHH
Confidence 36899999999985322 22 22333 56777877653
No 162
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.43 E-value=50 Score=22.78 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=13.6
Q ss_pred eEEEEEccchHhhhHhh
Q 037431 9 LCIAVIGATGELARRKI 25 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL 25 (93)
-+++|.||||.++....
T Consensus 7 ~~vlItGasg~iG~~l~ 23 (249)
T PRK12825 7 RVALVTGAARGLGRAIA 23 (249)
T ss_pred CEEEEeCCCchHHHHHH
Confidence 37899999999986543
No 163
>PRK06180 short chain dehydrogenase; Provisional
Probab=36.33 E-value=30 Score=25.20 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=22.3
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-.++|.||+|-+++... .. |.+. +.+|++++|+.
T Consensus 5 ~~vlVtGasggiG~~la-~~---l~~~-----G~~V~~~~r~~ 38 (277)
T PRK06180 5 KTWLITGVSSGFGRALA-QA---ALAA-----GHRVVGTVRSE 38 (277)
T ss_pred CEEEEecCCChHHHHHH-HH---HHhC-----cCEEEEEeCCH
Confidence 36899999998876543 22 2333 35677788754
No 164
>PLN02214 cinnamoyl-CoA reductase
Probab=36.23 E-value=32 Score=26.35 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=23.6
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||||-++...+- .|.+.| .+|+++.|+.
T Consensus 11 ~~vlVTGatGfIG~~l~~----~L~~~G-----~~V~~~~r~~ 44 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVK----ILLERG-----YTVKGTVRNP 44 (342)
T ss_pred CEEEEECCCcHHHHHHHH----HHHHCc-----CEEEEEeCCc
Confidence 368999999999876542 233444 5788888864
No 165
>PRK06500 short chain dehydrogenase; Provisional
Probab=36.23 E-value=30 Score=24.24 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=22.6
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||+|-++..-. ..| .+.| .+++.++|+.
T Consensus 7 k~vlItGasg~iG~~la-~~l---~~~g-----~~v~~~~r~~ 40 (249)
T PRK06500 7 KTALITGGTSGIGLETA-RQF---LAEG-----ARVAITGRDP 40 (249)
T ss_pred CEEEEeCCCchHHHHHH-HHH---HHCC-----CEEEEecCCH
Confidence 36999999999986433 322 2333 5688888864
No 166
>PRK07806 short chain dehydrogenase; Provisional
Probab=35.43 E-value=32 Score=24.26 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=23.2
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||||-++..-. .. |.+.| ..+++++|+.
T Consensus 7 k~vlItGasggiG~~l~-~~---l~~~G-----~~V~~~~r~~ 40 (248)
T PRK07806 7 KTALVTGSSRGIGADTA-KI---LAGAG-----AHVVVNYRQK 40 (248)
T ss_pred cEEEEECCCCcHHHHHH-HH---HHHCC-----CEEEEEeCCc
Confidence 46899999999986653 22 33344 4677788865
No 167
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=35.18 E-value=25 Score=24.33 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=24.4
Q ss_pred EEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCCh
Q 037431 11 IAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLID 54 (93)
Q Consensus 11 ~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~ 54 (93)
++|.||||=++.... -.|.+.| ..+++++|+..+.
T Consensus 1 IlI~GatG~iG~~l~----~~l~~~g-----~~v~~~~~~~~~~ 35 (236)
T PF01370_consen 1 ILITGATGFIGSALV----RQLLKKG-----HEVIVLSRSSNSE 35 (236)
T ss_dssp EEEETTTSHHHHHHH----HHHHHTT-----TEEEEEESCSTGG
T ss_pred EEEEccCCHHHHHHH----HHHHHcC-----Ccccccccccccc
Confidence 689999999996553 3444444 4477888887654
No 168
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=35.12 E-value=38 Score=24.32 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=22.4
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
.++|.||+|-+++.-. ..|.+.| .+++.++|+.-
T Consensus 2 ~vlItGas~gIG~aia----~~l~~~G-----~~V~~~~r~~~ 35 (259)
T PRK08340 2 NVLVTASSRGIGFNVA----RELLKKG-----ARVVISSRNEE 35 (259)
T ss_pred eEEEEcCCcHHHHHHH----HHHHHcC-----CEEEEEeCCHH
Confidence 5899999999986532 2233344 46777888653
No 169
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=34.94 E-value=67 Score=23.20 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=20.4
Q ss_pred EEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCC
Q 037431 11 IAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRK 50 (93)
Q Consensus 11 ~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~ 50 (93)
++|.||||=++..-. -. |... +..++++.|+
T Consensus 2 ilv~G~tG~iG~~l~-~~---l~~~-----g~~v~~~~r~ 32 (287)
T TIGR01214 2 ILITGANGQLGRELV-QQ---LSPE-----GRVVVALTSS 32 (287)
T ss_pred EEEEcCCCHHHHHHH-HH---HHhc-----CCEEEEeCCc
Confidence 689999998876544 22 2223 3567888886
No 170
>PRK07831 short chain dehydrogenase; Provisional
Probab=34.93 E-value=45 Score=23.87 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=25.5
Q ss_pred eEEEEEccch-HhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHH
Q 037431 9 LCIAVIGATG-ELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITA 62 (93)
Q Consensus 9 ~~~VIFGatG-DLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~ 62 (93)
-+++|.||+| .++..-. -.|.+.| .+|+.++|+....++..+.++
T Consensus 18 k~vlItG~sg~gIG~~ia----~~l~~~G-----~~V~~~~~~~~~~~~~~~~~~ 63 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATA----RRALEEG-----ARVVISDIHERRLGETADELA 63 (262)
T ss_pred CEEEEECCCcccHHHHHH----HHHHHcC-----CEEEEEeCCHHHHHHHHHHHH
Confidence 4689999997 7875433 1223334 347777776544344444443
No 171
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=34.92 E-value=61 Score=23.12 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=21.9
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCC
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRK 50 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~ 50 (93)
.-+++|.||+|.++..-. ..|.+.| .+++.++|+
T Consensus 15 ~k~vlItGas~gIG~~ia----~~l~~~G-----~~v~~~~~~ 48 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYA----VALAKAG-----ADIIITTHG 48 (258)
T ss_pred CCEEEEeCCCchHHHHHH----HHHHHCC-----CEEEEEeCC
Confidence 357899999999984332 2223333 567777776
No 172
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=34.92 E-value=45 Score=24.00 Aligned_cols=43 Identities=16% Similarity=0.043 Sum_probs=25.8
Q ss_pred eEEEEEccchHhhhHhhHHHHHH-HHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFA-LYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~-L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
-+++|.||+|.++. ++.. |...| .+++.++|+....++..+.+
T Consensus 11 k~~lItGa~~~iG~-----~ia~~l~~~G-----~~vv~~~~~~~~~~~~~~~~ 54 (265)
T PRK07097 11 KIALITGASYGIGF-----AIAKAYAKAG-----ATIVFNDINQELVDKGLAAY 54 (265)
T ss_pred CEEEEeCCCchHHH-----HHHHHHHHCC-----CeEEEEeCCHHHHHHHHHHH
Confidence 46899999999984 2222 23333 56777777664444444333
No 173
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=34.89 E-value=1.2e+02 Score=19.28 Aligned_cols=52 Identities=19% Similarity=0.084 Sum_probs=38.7
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHH
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITAS 63 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~ 63 (93)
+...+|.|-|+.--.-+..+|.|-.+.+.. +..||+++-.+ +.++.++.+.+
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~-~~~~~~~~~~~ 76 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKD-NPENALAWLAR 76 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCC-CHHHHHHHHHh
Confidence 345678888999998889999999998764 48999998643 45565555444
No 174
>PF06313 ACP53EA: Drosophila ACP53EA protein; InterPro: IPR009392 This family consists of several Drosophila ACP53EA accessory gland (seminal) proteins.
Probab=34.73 E-value=1.2e+02 Score=19.99 Aligned_cols=52 Identities=23% Similarity=0.102 Sum_probs=37.1
Q ss_pred cchHhhhHhhHHHHHHHHH-cCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhcccCCccCh
Q 037431 16 ATGELARRKIFQALFALYY-SGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRIDHLYGS 75 (93)
Q Consensus 16 atGDLA~RKL~PAL~~L~~-~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~~~~~~e~~ 75 (93)
|+|.|+.| .+|+++.|.. -|..|... .+.+...|...+.+.+++.+-+...|
T Consensus 14 a~s~l~~~-~IP~vk~la~C~~f~P~~~-------~~l~~~~~l~l~yqFlkk~i~~~~kC 66 (93)
T PF06313_consen 14 AGSSLASR-AIPTVKELAKCIDFKPKKT-------KDLDITWLLKLIYQFLKKLIFDNPKC 66 (93)
T ss_pred HHHHHHHH-HhHHHHHHHHccCCCCCCC-------CCcCHHHHHHHHHHHHHHHHccCchH
Confidence 45667655 4599999985 37777544 46688899999999998844344555
No 175
>PF05930 Phage_AlpA: Prophage CP4-57 regulatory protein (AlpA); InterPro: IPR010260 This entry is represents phage P4, Orf88. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. In Escherichia coli phage P4 Orf 88 is similar to AlpA of the CP4-57 cryptic prophage []. AlpA acts as a positive transcriptional regulator of slpA, a gene linked to alpA and necessary for suppression of lon mutants [, ]. The sequence of slpA suggests that it encodes an integrase gene closely related to phage P4 int and that both alpA and slpA are part of a cryptic P4-like prophage. Increase in alpA expression increases SlpA synthesis. Increased SlpA leads, in turn, to the excision and loss of the cryptic prophage. ; PDB: 1Z4H_A.
Probab=34.39 E-value=7.2 Score=22.44 Aligned_cols=31 Identities=10% Similarity=0.217 Sum_probs=13.1
Q ss_pred HHHHHHHHcCCCCCCeeEEEEeCCCCChHHHH
Q 037431 27 QALFALYYSGFLPENAGIVSYSRKNLIDEDLR 58 (93)
Q Consensus 27 PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~ 58 (93)
-++|++.++|.+|+..+|- -.+.-|..+|..
T Consensus 18 ~ti~~~~k~g~FP~pvklg-~r~~~W~~~eV~ 48 (51)
T PF05930_consen 18 STIYRLIKDGKFPKPVKLG-GRAVRWRESEVE 48 (51)
T ss_dssp HHHHHHHHHHH---SEESS-S-----------
T ss_pred HHHHHHHhcccCCCCEEEC-CCcccccccccc
Confidence 4689999999999887753 223344444433
No 176
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=34.31 E-value=1.2e+02 Score=22.93 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=23.0
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
+++|.|||+-++..- -..|.+.| ..+|+.++|+.-
T Consensus 5 ~vlITGas~GIG~ai----a~~L~~~G----~~~V~l~~r~~~ 39 (314)
T TIGR01289 5 TVIITGASSGLGLYA----AKALAATG----EWHVIMACRDFL 39 (314)
T ss_pred EEEEECCCChHHHHH----HHHHHHcC----CCEEEEEeCCHH
Confidence 678999999988542 23344444 157777888653
No 177
>PRK07024 short chain dehydrogenase; Provisional
Probab=34.06 E-value=31 Score=24.74 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=22.0
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+++|.||||-++..-. - .|.+.| .+|+.++|+.
T Consensus 4 ~vlItGas~gIG~~la-~---~l~~~G-----~~v~~~~r~~ 36 (257)
T PRK07024 4 KVFITGASSGIGQALA-R---EYARQG-----ATLGLVARRT 36 (257)
T ss_pred EEEEEcCCcHHHHHHH-H---HHHHCC-----CEEEEEeCCH
Confidence 6899999999886543 2 223333 4677788764
No 178
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=34.03 E-value=60 Score=22.69 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=20.4
Q ss_pred EEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 11 IAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 11 ~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
++|.||+|.++..-.. .|.+.| .+++.++|+.
T Consensus 1 vlItGas~giG~~~a~----~l~~~G-----~~v~~~~~~~ 32 (239)
T TIGR01831 1 VLVTGASRGIGRAIAN----RLAADG-----FEICVHYHSG 32 (239)
T ss_pred CEEeCCCchHHHHHHH----HHHHCC-----CEEEEEeCCC
Confidence 4789999999865442 223334 4567777654
No 179
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=34.01 E-value=1.2e+02 Score=22.12 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=35.0
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhc
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSC 67 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~ 67 (93)
.++|+|.+| ++|-.|+-|+.+-..... | +.+|+-+ +.++|...+.++++.
T Consensus 36 ~l~l~G~~G-~GKTHLL~Ai~~~~~~~~-~-~~~v~y~-----~~~~f~~~~~~~~~~ 85 (219)
T PF00308_consen 36 PLFLYGPSG-LGKTHLLQAIANEAQKQH-P-GKRVVYL-----SAEEFIREFADALRD 85 (219)
T ss_dssp EEEEEESTT-SSHHHHHHHHHHHHHHHC-T-TS-EEEE-----EHHHHHHHHHHHHHT
T ss_pred ceEEECCCC-CCHHHHHHHHHHHHHhcc-c-cccceee-----cHHHHHHHHHHHHHc
Confidence 478999998 799999999999876532 2 4666655 456666666655543
No 180
>PRK12743 oxidoreductase; Provisional
Probab=33.90 E-value=1.1e+02 Score=21.81 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=21.5
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+++|.||+|.++.. ...+|.+.| .+++.+.|++
T Consensus 4 ~vlItGas~giG~~----~a~~l~~~G-----~~V~~~~~~~ 36 (256)
T PRK12743 4 VAIVTASDSGIGKA----CALLLAQQG-----FDIGITWHSD 36 (256)
T ss_pred EEEEECCCchHHHH----HHHHHHHCC-----CEEEEEeCCC
Confidence 68999999999954 233344444 4666665544
No 181
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=33.67 E-value=1.4e+02 Score=24.63 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=41.3
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhcccC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSCRID 70 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~~~~ 70 (93)
-.-|+.|=|||-+++-+ =+|..|.+. ..++.+|+.-=-=.-.+++|++.|.+.-++...
T Consensus 185 ~ltILvGNSgd~sNnHi-eaL~~L~~~--~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~ 243 (360)
T PF07429_consen 185 KLTILVGNSGDPSNNHI-EALEALKQQ--FGDDVKIIVPLSYGANNQAYIQQVIQAGKELFG 243 (360)
T ss_pred ceEEEEcCCCCCCccHH-HHHHHHHHh--cCCCeEEEEECCCCCchHHHHHHHHHHHHHhcC
Confidence 44688999999999998 788888763 344677664311122368999999987776443
No 182
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=33.50 E-value=1.1e+02 Score=21.20 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=23.0
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+++|.||+|.++.. +...| .+.| .+++.++|+.
T Consensus 4 ~vlItG~s~~iG~~-la~~l---~~~g-----~~vi~~~r~~ 36 (245)
T PRK12824 4 IALVTGAKRGIGSA-IAREL---LNDG-----YRVIATYFSG 36 (245)
T ss_pred EEEEeCCCchHHHH-HHHHH---HHcC-----CEEEEEeCCc
Confidence 68999999999976 32333 3333 4788888875
No 183
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=33.43 E-value=37 Score=24.39 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=22.2
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-.++|.||||.++.--. -.|.+. +.+|+.++|+.
T Consensus 6 k~vlItGas~gIG~~ia----~~l~~~-----G~~V~~~~r~~ 39 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIV----DRFVAE-----GARVAVLDKSA 39 (262)
T ss_pred cEEEEECCCChHHHHHH----HHHHHC-----CCEEEEEeCCH
Confidence 46899999999884322 223333 35777788764
No 184
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=33.41 E-value=1.3e+02 Score=20.64 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=18.8
Q ss_pred CCeeEEEEeCCCCChHHHHHHHHHHhhc
Q 037431 40 ENAGIVSYSRKNLIDEDLRSITASVLSC 67 (93)
Q Consensus 40 ~~~~Iig~aR~~~s~~~~~~~v~~~l~~ 67 (93)
..+-++|++-.+...+..+..++..++.
T Consensus 100 ~pv~~~g~g~gp~~~~~~~~~~~~~l~~ 127 (286)
T PF04230_consen 100 KPVIILGQGIGPFRSEEFKKLLRRILSK 127 (286)
T ss_pred CCeEEECceECccCCHHHHHHHHHHHhC
Confidence 3578888888666566666666666654
No 185
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=33.22 E-value=61 Score=23.83 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=24.2
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLI 53 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s 53 (93)
-.++|.||||=++.... . .|...| ..|+++.|+...
T Consensus 5 ~~ilVtGatGfIG~~l~-~---~L~~~g-----~~V~~~~r~~~~ 40 (322)
T PLN02662 5 KVVCVTGASGYIASWLV-K---LLLQRG-----YTVKATVRDPND 40 (322)
T ss_pred CEEEEECChHHHHHHHH-H---HHHHCC-----CEEEEEEcCCCc
Confidence 36899999999996643 2 233334 478888886543
No 186
>PRK06523 short chain dehydrogenase; Provisional
Probab=32.66 E-value=51 Score=23.46 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=22.3
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
.-.++|.||||.++..-. -. |.+.| .+|+.++|+.
T Consensus 9 ~k~vlItGas~gIG~~ia-~~---l~~~G-----~~v~~~~r~~ 43 (260)
T PRK06523 9 GKRALVTGGTKGIGAATV-AR---LLEAG-----ARVVTTARSR 43 (260)
T ss_pred CCEEEEECCCCchhHHHH-HH---HHHCC-----CEEEEEeCCh
Confidence 357899999999985332 22 23334 4677777753
No 187
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=32.41 E-value=1.3e+02 Score=21.48 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=22.4
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||+|.+++.-. -.|.+.| .+|+.++|+.
T Consensus 9 k~~lItGas~gIG~aia----~~l~~~G-----~~vv~~~~~~ 42 (251)
T PRK12481 9 KVAIITGCNTGLGQGMA----IGLAKAG-----ADIVGVGVAE 42 (251)
T ss_pred CEEEEeCCCchHHHHHH----HHHHHCC-----CEEEEecCch
Confidence 46899999999986433 2233334 5677777754
No 188
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=32.37 E-value=1.6e+02 Score=19.71 Aligned_cols=55 Identities=9% Similarity=-0.010 Sum_probs=40.7
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHH
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITAS 63 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~ 63 (93)
+...+|.|-++..-.-+...|.|-.++++= -..+..+++++..+ +.+++++++++
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~-~~~~~~vi~i~~d~-~~~~~~~~~~~ 115 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKY-KEKGVEIIAVNVDE-TELAVKNFVNR 115 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHh-hcCCeEEEEEEcCC-CHHHHHHHHHH
Confidence 456788888999999999999999998642 12358999998764 45566666544
No 189
>PRK08339 short chain dehydrogenase; Provisional
Probab=32.34 E-value=41 Score=24.49 Aligned_cols=43 Identities=14% Similarity=0.045 Sum_probs=26.6
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
+.+|.||+|.+++.-- ..|.+.| .+|+.++|+.-..++..+.+
T Consensus 10 ~~lItGas~gIG~aia----~~l~~~G-----~~V~~~~r~~~~~~~~~~~~ 52 (263)
T PRK08339 10 LAFTTASSKGIGFGVA----RVLARAG-----ADVILLSRNEENLKKAREKI 52 (263)
T ss_pred EEEEeCCCCcHHHHHH----HHHHHCC-----CEEEEEeCCHHHHHHHHHHH
Confidence 5789999999986532 2233444 56888888654434444443
No 190
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=31.92 E-value=89 Score=22.56 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=22.2
Q ss_pred EEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 11 IAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 11 ~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
++|.||||=++ +.|.+.|-.- +..|+++.|...
T Consensus 3 ILVtG~tGfiG-~~l~~~L~~~--------g~~V~~~~r~~~ 35 (314)
T COG0451 3 ILVTGGAGFIG-SHLVERLLAA--------GHDVRGLDRLRD 35 (314)
T ss_pred EEEEcCcccHH-HHHHHHHHhC--------CCeEEEEeCCCc
Confidence 89999999999 4444554322 456777776544
No 191
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=31.90 E-value=1.3e+02 Score=18.61 Aligned_cols=53 Identities=6% Similarity=-0.006 Sum_probs=36.3
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHH
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITAS 63 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~ 63 (93)
+...+|.|-++.=-.=++.+|.|-.+++.. ..+..|+++. +.+.++..+.+++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~--~~~~~vi~v~--~~~~~~~~~~~~~ 73 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAE--ADWLDVVLAS--DGEKAEHQRFLKK 73 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHh--cCCcEEEEEe--CCCHHHHHHHHHH
Confidence 456677777877777788899999987653 3468888774 3455666665544
No 192
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=31.52 E-value=55 Score=23.31 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=25.5
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRS 59 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~ 59 (93)
-+++|.||+|.++..-. -.|.+.| .+++.++|+....++..+
T Consensus 12 k~vlVtG~s~gIG~~la----~~l~~~G-----~~vv~~~r~~~~~~~~~~ 53 (255)
T PRK06113 12 KCAIITGAGAGIGKEIA----ITFATAG-----ASVVVSDINADAANHVVD 53 (255)
T ss_pred CEEEEECCCchHHHHHH----HHHHHCC-----CeEEEEeCCHHHHHHHHH
Confidence 46899999999986533 2233334 457777776543333333
No 193
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=31.28 E-value=24 Score=28.21 Aligned_cols=15 Identities=40% Similarity=0.698 Sum_probs=12.5
Q ss_pred EEEEccchHhhhHhh
Q 037431 11 IAVIGATGELARRKI 25 (93)
Q Consensus 11 ~VIFGatGDLA~RKL 25 (93)
+=+-|||||+|-|.|
T Consensus 105 lDvaGGTGDiaFril 119 (296)
T KOG1540|consen 105 LDVAGGTGDIAFRIL 119 (296)
T ss_pred EEecCCcchhHHHHH
Confidence 457899999998865
No 194
>PRK05872 short chain dehydrogenase; Provisional
Probab=31.15 E-value=1.2e+02 Score=22.41 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=23.0
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||+|.++..-. ..|.+.| .+|+.++|+.
T Consensus 10 k~vlItGas~gIG~~ia----~~l~~~G-----~~V~~~~r~~ 43 (296)
T PRK05872 10 KVVVVTGAARGIGAELA----RRLHARG-----AKLALVDLEE 43 (296)
T ss_pred CEEEEECCCchHHHHHH----HHHHHCC-----CEEEEEeCCH
Confidence 47899999999995432 2233444 4677788864
No 195
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=31.09 E-value=1.6e+02 Score=20.68 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=33.2
Q ss_pred hHhhHH-HHHHHHHcCCCCCCeeEEEEeCCCCChH-HHHHHHHHHhhcccC
Q 037431 22 RRKIFQ-ALFALYYSGFLPENAGIVSYSRKNLIDE-DLRSITASVLSCRID 70 (93)
Q Consensus 22 ~RKL~P-AL~~L~~~g~Lp~~~~Iig~aR~~~s~~-~~~~~v~~~l~~~~~ 70 (93)
.|||-| .+|+...+.. ++..|+++++.+-.++ +|.+.+++-.+.+..
T Consensus 3 lrkl~~~~m~e~wedd~--~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~ 51 (120)
T cd03074 3 LRKLKPENMFETWEDDL--DGIHIVAFAEEEDPDGYEFLEILKEVARDNTD 51 (120)
T ss_pred hhhccHHHHHHhhhccc--CCceEEEEeccCCccHHHHHHHHHHHHHhcCc
Confidence 466655 4677775554 4899999999887666 888887776555543
No 196
>PRK05599 hypothetical protein; Provisional
Probab=31.02 E-value=1.5e+02 Score=21.21 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=26.4
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITA 62 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~ 62 (93)
+++|.||++-+++.-- ..+..| .+++.++|+.-..++..+.++
T Consensus 2 ~vlItGas~GIG~aia-----~~l~~g-----~~Vil~~r~~~~~~~~~~~l~ 44 (246)
T PRK05599 2 SILILGGTSDIAGEIA-----TLLCHG-----EDVVLAARRPEAAQGLASDLR 44 (246)
T ss_pred eEEEEeCccHHHHHHH-----HHHhCC-----CEEEEEeCCHHHHHHHHHHHH
Confidence 5789999999985432 222223 567778887644444444443
No 197
>PRK06197 short chain dehydrogenase; Provisional
Probab=30.92 E-value=40 Score=25.00 Aligned_cols=44 Identities=23% Similarity=0.095 Sum_probs=27.1
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
-+++|.||+|-++..-. ..|.+.| .+++.++|+....++..+.+
T Consensus 17 k~vlItGas~gIG~~~a----~~l~~~G-----~~vi~~~r~~~~~~~~~~~l 60 (306)
T PRK06197 17 RVAVVTGANTGLGYETA----AALAAKG-----AHVVLAVRNLDKGKAAAARI 60 (306)
T ss_pred CEEEEcCCCCcHHHHHH----HHHHHCC-----CEEEEEeCCHHHHHHHHHHH
Confidence 46999999999886442 2233444 46888888654333333333
No 198
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=30.89 E-value=1.7e+02 Score=19.59 Aligned_cols=56 Identities=9% Similarity=0.130 Sum_probs=33.7
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCC-CCCCeeEEEEeCCCCC---------hHHHHHHHHHHh
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGF-LPENAGIVSYSRKNLI---------DEDLRSITASVL 65 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~-Lp~~~~Iig~aR~~~s---------~~~~~~~v~~~l 65 (93)
..++-.|-+|+-+.. +...+.+...... .+.+.-||.+|-.+.. .++|.+.+++-+
T Consensus 33 ~~v~N~g~~G~t~~~-~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~i 98 (199)
T cd01838 33 LDVINRGFSGYNTRW-ALKVLPKIFLEEKLAQPDLVTIFFGANDAALPGQPQHVPLDEYKENLRKIV 98 (199)
T ss_pred hheeccCCCcccHHH-HHHHHHHhcCccccCCceEEEEEecCccccCCCCCCcccHHHHHHHHHHHH
Confidence 678889999987643 3344444332221 1457888888766654 455655555544
No 199
>PRK06482 short chain dehydrogenase; Provisional
Probab=30.77 E-value=41 Score=24.30 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=21.9
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+++|.||||-++.... . .|.+.| .+++.+.|+.
T Consensus 4 ~vlVtGasg~IG~~la-~---~L~~~g-----~~v~~~~r~~ 36 (276)
T PRK06482 4 TWFITGASSGFGRGMT-E---RLLARG-----DRVAATVRRP 36 (276)
T ss_pred EEEEecCCCHHHHHHH-H---HHHHCC-----CEEEEEeCCH
Confidence 5889999999986643 2 233334 4677777764
No 200
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=30.62 E-value=1.8e+02 Score=20.00 Aligned_cols=52 Identities=13% Similarity=-0.020 Sum_probs=36.9
Q ss_pred CCCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHH
Q 037431 6 ASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITAS 63 (93)
Q Consensus 6 ~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~ 63 (93)
.+...+|.|-++.--.=++..|.|-.+.+. +..||+++..+ +.++.++++.+
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~-~~~~~~~~~~~ 113 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKD-QSQNALKFLKE 113 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCC-ChHHHHHHHHH
Confidence 346778888888777778899999888764 47899998644 33444455443
No 201
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=30.46 E-value=1.9e+02 Score=20.20 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=12.2
Q ss_pred EEEEEccchHhhhH
Q 037431 10 CIAVIGATGELARR 23 (93)
Q Consensus 10 ~~VIFGatGDLA~R 23 (93)
+++|.||+|-++..
T Consensus 4 ~ilItGas~giG~~ 17 (248)
T PRK06947 4 VVLITGASRGIGRA 17 (248)
T ss_pred EEEEeCCCCcHHHH
Confidence 68999999999865
No 202
>PRK12744 short chain dehydrogenase; Provisional
Probab=30.43 E-value=1.2e+02 Score=21.50 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=12.3
Q ss_pred eEEEEEccchHhhhH
Q 037431 9 LCIAVIGATGELARR 23 (93)
Q Consensus 9 ~~~VIFGatGDLA~R 23 (93)
-.++|.||+|-++..
T Consensus 9 k~vlItGa~~gIG~~ 23 (257)
T PRK12744 9 KVVLIAGGAKNLGGL 23 (257)
T ss_pred cEEEEECCCchHHHH
Confidence 468999999998854
No 203
>PRK08263 short chain dehydrogenase; Provisional
Probab=30.43 E-value=42 Score=24.35 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=22.6
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
+++|.||+|-+++.-. .. |.+.| ..|+.++|+..
T Consensus 5 ~vlItGasg~iG~~~a-~~---l~~~g-----~~V~~~~r~~~ 38 (275)
T PRK08263 5 VWFITGASRGFGRAWT-EA---ALERG-----DRVVATARDTA 38 (275)
T ss_pred EEEEeCCCChHHHHHH-HH---HHHCC-----CEEEEEECCHH
Confidence 6899999999986532 22 23334 46777888653
No 204
>PLN02427 UDP-apiose/xylose synthase
Probab=30.37 E-value=68 Score=24.73 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=24.4
Q ss_pred CCCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 6 ASSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 6 ~~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
..+.+++|.||||=++...+ .. |.+.| ...|+++.|+.
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv-~~---L~~~~----g~~V~~l~r~~ 49 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLC-EK---LMTET----PHKVLALDVYN 49 (386)
T ss_pred ccCcEEEEECCcchHHHHHH-HH---HHhcC----CCEEEEEecCc
Confidence 34567999999999986543 33 33332 24677777653
No 205
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=30.02 E-value=42 Score=26.60 Aligned_cols=69 Identities=22% Similarity=0.191 Sum_probs=36.5
Q ss_pred CCCeEEEEEccc--hHhhhHhhHHHHHHHHHcCCCCCCeeEEEE---eCCCCChHHHHHHHHHHhhcccCCccChhHHHh
Q 037431 6 ASSLCIAVIGAT--GELARRKIFQALFALYYSGFLPENAGIVSY---SRKNLIDEDLRSITASVLSCRIDHLYGSHAAIQ 80 (93)
Q Consensus 6 ~~~~~~VIFGat--GDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~---aR~~~s~~~~~~~v~~~l~~~~~~~e~~~~~~~ 80 (93)
.+....|+|||+ |-|| |++++-.....- .-++- -....+--+|-+.|.+.+..... .|.+.++
T Consensus 110 ~~~~pwI~~GgSY~G~La------aw~r~kyP~~~~---ga~ASSapv~a~~df~~y~~~v~~~~~~~~~---~C~~~i~ 177 (434)
T PF05577_consen 110 APNSPWIVFGGSYGGALA------AWFRLKYPHLFD---GAWASSAPVQAKVDFWEYFEVVTESLRKYGP---NCYDAIR 177 (434)
T ss_dssp GCC--EEEEEETHHHHHH------HHHHHH-TTT-S---EEEEET--CCHCCTTTHHHHHHHHHHHCCSC---CHHHHHH
T ss_pred CCCCCEEEECCcchhHHH------HHHHhhCCCeeE---EEEeccceeeeecccHHHHHHHHHHHHhhcc---HHHHHHH
Confidence 456789999996 6665 333333333321 11111 12233445888888888766554 3877776
Q ss_pred hcCCce
Q 037431 81 IQVPAI 86 (93)
Q Consensus 81 ~~~~~~ 86 (93)
.-+-.|
T Consensus 178 ~a~~~i 183 (434)
T PF05577_consen 178 AAFDQI 183 (434)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 206
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=29.92 E-value=47 Score=22.99 Aligned_cols=34 Identities=24% Similarity=0.182 Sum_probs=20.9
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||||-++..-. -+|.+.| .+++.++|+.
T Consensus 6 ~~vlItG~sg~iG~~l~----~~l~~~G-----~~v~~~~~~~ 39 (248)
T PRK05557 6 KVALVTGASRGIGRAIA----ERLAAQG-----ANVVINYASS 39 (248)
T ss_pred CEEEEECCCchHHHHHH----HHHHHCC-----CEEEEEeCCc
Confidence 36899999999886433 2223334 3565566654
No 207
>PRK06114 short chain dehydrogenase; Provisional
Probab=29.85 E-value=92 Score=22.19 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=22.0
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+++|.||+|.++..-. ..|.+.| .+++.++|+.
T Consensus 10 ~~lVtG~s~gIG~~ia----~~l~~~G-----~~v~~~~r~~ 42 (254)
T PRK06114 10 VAFVTGAGSGIGQRIA----IGLAQAG-----ADVALFDLRT 42 (254)
T ss_pred EEEEECCCchHHHHHH----HHHHHCC-----CEEEEEeCCc
Confidence 6889999999886433 2233334 4677778765
No 208
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=29.82 E-value=1.1e+02 Score=22.74 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=20.1
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRK 50 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~ 50 (93)
.++|.||+|=++.... ..| ...| .++++.|.
T Consensus 2 ~iLVtG~~GfiGs~l~-~~L---~~~g------~V~~~~~~ 32 (299)
T PRK09987 2 NILLFGKTGQVGWELQ-RAL---APLG------NLIALDVH 32 (299)
T ss_pred eEEEECCCCHHHHHHH-HHh---hccC------CEEEeccc
Confidence 5899999999996643 332 2222 46777764
No 209
>PTZ00056 glutathione peroxidase; Provisional
Probab=29.80 E-value=2.1e+02 Score=20.54 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=39.0
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC------CChHHHHHHHHH
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN------LIDEDLRSITAS 63 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~------~s~~~~~~~v~~ 63 (93)
+...+|.|=||--=.-++-+|.|-.|++.- -..++.|||++..+ -+.++.++.+++
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~-~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~ 100 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMNRLHSVF-NPLGLEILAFPTSQFLNQEFPNTKDIRKFNDK 100 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHHHH-hcCceEEEEecchhccCCCCCCHHHHHHHHHH
Confidence 356788888887766788889999998763 23479999998643 234455555543
No 210
>PRK06841 short chain dehydrogenase; Provisional
Probab=29.49 E-value=42 Score=23.74 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=22.5
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||+|-++..-. .. |.+.| .+++.++|+.
T Consensus 16 k~vlItGas~~IG~~la-~~---l~~~G-----~~Vi~~~r~~ 49 (255)
T PRK06841 16 KVAVVTGGASGIGHAIA-EL---FAAKG-----ARVALLDRSE 49 (255)
T ss_pred CEEEEECCCChHHHHHH-HH---HHHCC-----CEEEEEeCCH
Confidence 36899999999985432 22 23334 4688888864
No 211
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=29.32 E-value=1.6e+02 Score=18.98 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=24.4
Q ss_pred EEEccchHhhhHhhHHHHHHHHHcCC-CCCCeeEEEEeCCC
Q 037431 12 AVIGATGELARRKIFQALFALYYSGF-LPENAGIVSYSRKN 51 (93)
Q Consensus 12 VIFGatGDLA~RKL~PAL~~L~~~g~-Lp~~~~Iig~aR~~ 51 (93)
.||.++..++.+ .+..+.+.|. +|++..|++++...
T Consensus 71 aii~~~~~~a~~----~~~~l~~~g~~vP~di~vv~~~~~~ 107 (160)
T PF13377_consen 71 AIICSNDRLALG----VLRALRELGIRVPQDISVVSFDDSP 107 (160)
T ss_dssp EEEESSHHHHHH----HHHHHHHTTSCTTTTSEEEEESSSG
T ss_pred EEEEcCHHHHHH----HHHHHHHcCCcccccccEEEecCcH
Confidence 344466666643 3455566676 89999999998753
No 212
>PRK08309 short chain dehydrogenase; Provisional
Probab=29.16 E-value=1.4e+02 Score=21.19 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
.++|+||||-. .+ +.-.| .+.| .+++..+|+.
T Consensus 2 ~vlVtGGtG~g-g~-la~~L---~~~G-----~~V~v~~R~~ 33 (177)
T PRK08309 2 HALVIGGTGML-KR-VSLWL---CEKG-----FHVSVIARRE 33 (177)
T ss_pred EEEEECcCHHH-HH-HHHHH---HHCc-----CEEEEEECCH
Confidence 47899999855 33 44443 3444 3566667754
No 213
>PRK06483 dihydromonapterin reductase; Provisional
Probab=29.06 E-value=51 Score=23.16 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=22.7
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+++|.||+|.++..-. ..|.+.| .+|+.++|+.
T Consensus 4 ~vlItGas~gIG~~ia----~~l~~~G-----~~V~~~~r~~ 36 (236)
T PRK06483 4 PILITGAGQRIGLALA----WHLLAQG-----QPVIVSYRTH 36 (236)
T ss_pred eEEEECCCChHHHHHH----HHHHHCC-----CeEEEEeCCc
Confidence 6899999999986543 2233333 5788888865
No 214
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=29.05 E-value=2e+02 Score=20.22 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=29.2
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCC--CCCCeeEEEEeCCCCC----hHHHHHHHHHHh
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGF--LPENAGIVSYSRKNLI----DEDLRSITASVL 65 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~--Lp~~~~Iig~aR~~~s----~~~~~~~v~~~l 65 (93)
...++=+|-+||-+... ++++..... +.++.-||.+|-.+.. .+++.+.+++-+
T Consensus 60 ~~~v~N~Gi~G~tt~~~----l~r~~~~~l~~~~pd~VvI~~G~ND~~~~~~~~~~~~~l~~ii 119 (214)
T cd01820 60 PLHALNFGIGGDRTQNV----LWRLENGELDGVNPKVVVLLIGTNNIGHTTTAEEIAEGILAIV 119 (214)
T ss_pred cCCeEeeeeccccHhHH----HHHHhcCCccCCCCCEEEEEecccccCCCCCHHHHHHHHHHHH
Confidence 34566677777765432 333332211 2357788888877753 445555444433
No 215
>PRK06139 short chain dehydrogenase; Provisional
Probab=28.98 E-value=49 Score=25.55 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=26.7
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSIT 61 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v 61 (93)
-+++|.||||-+++--. -.|.+.| .+|+.++|+.-..++..+.+
T Consensus 8 k~vlITGAs~GIG~aia----~~la~~G-----~~Vvl~~R~~~~l~~~~~~~ 51 (330)
T PRK06139 8 AVVVITGASSGIGQATA----EAFARRG-----ARLVLAARDEEALQAVAEEC 51 (330)
T ss_pred CEEEEcCCCCHHHHHHH----HHHHHCC-----CEEEEEECCHHHHHHHHHHH
Confidence 47899999999885422 2223333 56888888654333433333
No 216
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=28.91 E-value=1.6e+02 Score=24.46 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=31.5
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHH
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASV 64 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~ 64 (93)
.++|+|+||=-+.--| -=+. ..|+.+.|+|++-.. ..+.+.+++++.
T Consensus 3 ~i~IlGsTGSIG~qtL----~Vi~---~~~~~f~v~~Laa~~-n~~~L~~q~~~f 49 (389)
T TIGR00243 3 QIVILGSTGSIGKSTL----DVVR---HNPDHFQVVALSAGK-NVALMVEQILEF 49 (389)
T ss_pred eEEEEecChHHHHHHH----HHHH---hCccccEEEEEEcCC-CHHHHHHHHHHc
Confidence 5899999999886443 2222 246679999998644 456666666553
No 217
>PRK06701 short chain dehydrogenase; Provisional
Probab=28.90 E-value=95 Score=23.08 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=22.8
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||+|.|+..-. .+|.+.| .+++.++|+.
T Consensus 47 k~iLItGasggIG~~la----~~l~~~G-----~~V~l~~r~~ 80 (290)
T PRK06701 47 KVALITGGDSGIGRAVA----VLFAKEG-----ADIAIVYLDE 80 (290)
T ss_pred CEEEEeCCCcHHHHHHH----HHHHHCC-----CEEEEEeCCc
Confidence 36999999999986543 2233334 4677777765
No 218
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=28.79 E-value=1.5e+02 Score=21.51 Aligned_cols=45 Identities=7% Similarity=0.072 Sum_probs=33.0
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHH
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITA 62 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~ 62 (93)
--.|||+-+-||.+ |-.-.|-..| .+++++|-...+.++++..+.
T Consensus 106 iD~~vLvSgD~DF~-----~Lv~~lre~G-----~~V~v~g~~~~ts~~L~~acd 150 (160)
T TIGR00288 106 IDAVALVTRDADFL-----PVINKAKENG-----KETIVIGAEPGFSTALQNSAD 150 (160)
T ss_pred CCEEEEEeccHhHH-----HHHHHHHHCC-----CEEEEEeCCCCChHHHHHhcC
Confidence 34689999999986 6666666655 578888866777777766543
No 219
>PRK07041 short chain dehydrogenase; Provisional
Probab=28.64 E-value=33 Score=23.90 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=20.0
Q ss_pred EEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 12 AVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 12 VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+|.||||-+++.-. .. |.+.| .+|+.++|+.
T Consensus 1 lItGas~~iG~~~a-~~---l~~~G-----~~v~~~~r~~ 31 (230)
T PRK07041 1 LVVGGSSGIGLALA-RA---FAAEG-----ARVTIASRSR 31 (230)
T ss_pred CeecCCChHHHHHH-HH---HHHCC-----CEEEEEeCCH
Confidence 47899998886632 22 23334 4688888864
No 220
>PRK07578 short chain dehydrogenase; Provisional
Probab=28.43 E-value=2e+02 Score=19.64 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=20.4
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+++|.||+|=+++.-. ..+... .++++++|+.
T Consensus 2 ~vlItGas~giG~~la-----~~l~~~-----~~vi~~~r~~ 33 (199)
T PRK07578 2 KILVIGASGTIGRAVV-----AELSKR-----HEVITAGRSS 33 (199)
T ss_pred eEEEEcCCcHHHHHHH-----HHHHhc-----CcEEEEecCC
Confidence 5899999998876432 222222 4677788753
No 221
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=28.39 E-value=81 Score=23.88 Aligned_cols=38 Identities=24% Similarity=0.130 Sum_probs=24.8
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDE 55 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~ 55 (93)
-+++|.||||=++..-. ..|- +.| .+|++++|+.....
T Consensus 5 k~ilItGatG~IG~~l~-~~L~---~~G-----~~V~~~~r~~~~~~ 42 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLS-LWLL---ELG-----AEVYGYSLDPPTSP 42 (349)
T ss_pred CEEEEECCCChhHHHHH-HHHH---HCC-----CEEEEEeCCCccch
Confidence 46899999998884332 3332 333 46888888775443
No 222
>PRK05876 short chain dehydrogenase; Provisional
Probab=28.37 E-value=57 Score=24.01 Aligned_cols=41 Identities=10% Similarity=-0.044 Sum_probs=25.2
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLR 58 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~ 58 (93)
-+++|.||+|-+++... - .|.+.| .+|+.++|+....++..
T Consensus 7 k~vlVTGas~gIG~ala-~---~La~~G-----~~Vv~~~r~~~~l~~~~ 47 (275)
T PRK05876 7 RGAVITGGASGIGLATG-T---EFARRG-----ARVVLGDVDKPGLRQAV 47 (275)
T ss_pred CEEEEeCCCchHHHHHH-H---HHHHCC-----CEEEEEeCCHHHHHHHH
Confidence 36899999999986532 2 233334 56777777753333333
No 223
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=28.16 E-value=1.3e+02 Score=21.14 Aligned_cols=37 Identities=32% Similarity=0.475 Sum_probs=24.7
Q ss_pred EEEccchHhhhHhhHHHHHHHHHcCC-CCCCeeEEEEeCCCC
Q 037431 12 AVIGATGELARRKIFQALFALYYSGF-LPENAGIVSYSRKNL 52 (93)
Q Consensus 12 VIFGatGDLA~RKL~PAL~~L~~~g~-Lp~~~~Iig~aR~~~ 52 (93)
+||+.++.+|.. ++-.+...|. +|++..|+|++..++
T Consensus 180 ai~~~~d~~a~g----~~~~l~~~g~~ip~di~v~g~d~~~~ 217 (268)
T cd06270 180 AVFCANDEMAAG----AISALREHGISVPQDVSIIGFDDVLL 217 (268)
T ss_pred EEEEcCcHHHHH----HHHHHHHcCCCCCCceeEEEecCchH
Confidence 666667776632 3344445565 789999999987654
No 224
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=27.97 E-value=92 Score=23.10 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=23.5
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLI 53 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s 53 (93)
-+++|.||+|-++.... .. |.+.| ..|+++.|+...
T Consensus 6 k~vlVtG~~G~IG~~l~-~~---L~~~G-----~~V~~~~r~~~~ 41 (325)
T PLN02989 6 KVVCVTGASGYIASWIV-KL---LLFRG-----YTINATVRDPKD 41 (325)
T ss_pred CEEEEECCchHHHHHHH-HH---HHHCC-----CEEEEEEcCCcc
Confidence 47899999999875433 33 23334 467777777644
No 225
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=27.89 E-value=69 Score=24.90 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=23.5
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCC
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRK 50 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~ 50 (93)
..-.++|.||||=++...+ ..| .+.| ..|++++|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~-~~L---~~~G-----~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICITGAGGFIASHIA-RRL---KAEG-----HYIIASDWK 54 (370)
T ss_pred CCCEEEEECCccHHHHHHH-HHH---HhCC-----CEEEEEEec
Confidence 3567999999999986543 333 3333 467777764
No 226
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=27.85 E-value=65 Score=22.44 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=12.2
Q ss_pred EEEEEccchHhhhH
Q 037431 10 CIAVIGATGELARR 23 (93)
Q Consensus 10 ~~VIFGatGDLA~R 23 (93)
+++|.||+|-++..
T Consensus 3 ~~lItGa~g~iG~~ 16 (247)
T PRK09730 3 IALVTGGSRGIGRA 16 (247)
T ss_pred EEEEeCCCchHHHH
Confidence 58999999999865
No 227
>PLN02780 ketoreductase/ oxidoreductase
Probab=27.65 E-value=56 Score=25.01 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=27.9
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHH
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITA 62 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~ 62 (93)
-.++|.||||-+++-.- ..|.+.| .+|+.++|+.-..++..+.++
T Consensus 54 ~~~lITGAs~GIG~alA----~~La~~G-----~~Vil~~R~~~~l~~~~~~l~ 98 (320)
T PLN02780 54 SWALVTGPTDGIGKGFA----FQLARKG-----LNLVLVARNPDKLKDVSDSIQ 98 (320)
T ss_pred CEEEEeCCCcHHHHHHH----HHHHHCC-----CCEEEEECCHHHHHHHHHHHH
Confidence 46899999999885432 2233444 478888987644344444443
No 228
>PRK07201 short chain dehydrogenase; Provisional
Probab=27.61 E-value=62 Score=26.65 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=24.6
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+++|.||||=++...+ ..| ..+ ..+..|+++.|+.
T Consensus 2 ~ILVTGatGfIG~~lv-~~L---l~~---~~g~~V~~l~R~~ 36 (657)
T PRK07201 2 RYFVTGGTGFIGRRLV-SRL---LDR---RREATVHVLVRRQ 36 (657)
T ss_pred eEEEeCCccHHHHHHH-HHH---Hhc---CCCCEEEEEECcc
Confidence 5899999999997765 333 221 2356899999954
No 229
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.60 E-value=2e+02 Score=19.45 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=34.7
Q ss_pred CeEEEEEc-----cchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHH
Q 037431 8 SLCIAVIG-----ATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITAS 63 (93)
Q Consensus 8 ~~~~VIFG-----atGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~ 63 (93)
|..++++| |.|+=....-|+......-....+....++-.|.+..+..++.+++.+
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~~~~~~l~~ 62 (191)
T cd01836 2 PLRLLVLGDSTAAGVGVETQDQALAGQLARGLAAITGRGVRWRLFAKTGATSADLLRQLAP 62 (191)
T ss_pred CeEEEEEeccccccccccchhccHHHHHHHHHHHhhCCceEEEEEecCCcCHHHHHHHHHh
Confidence 45666666 334433334444433322223335578889999999999999888776
No 230
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=27.56 E-value=29 Score=28.39 Aligned_cols=19 Identities=42% Similarity=0.810 Sum_probs=14.3
Q ss_pred CeEEEEEccch--------HhhhHhhHHH
Q 037431 8 SLCIAVIGATG--------ELARRKIFQA 28 (93)
Q Consensus 8 ~~~~VIFGatG--------DLA~RKL~PA 28 (93)
.-.+||.|+|| |||.| ||+
T Consensus 7 ~KVvvI~G~TGsGKSrLaVdLA~r--f~~ 33 (348)
T KOG1384|consen 7 DKVVVIMGATGAGKSRLAVDLATR--FPG 33 (348)
T ss_pred ceEEEEecCCCCChhhhHHHHHHh--CCc
Confidence 34689999999 77777 554
No 231
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.17 E-value=52 Score=22.96 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=21.4
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
+++|.||+|.++..-. . .|.++| .+++.++|+.
T Consensus 7 ~~lVtGas~~iG~~ia-~---~l~~~G-----~~v~~~~r~~ 39 (235)
T PRK06550 7 TVLITGAASGIGLAQA-R---AFLAQG-----AQVYGVDKQD 39 (235)
T ss_pred EEEEcCCCchHHHHHH-H---HHHHCC-----CEEEEEeCCc
Confidence 6889999999985433 2 223334 4677777764
No 232
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=27.15 E-value=1.4e+02 Score=21.59 Aligned_cols=50 Identities=20% Similarity=0.186 Sum_probs=36.1
Q ss_pred EEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHH
Q 037431 11 IAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITAS 63 (93)
Q Consensus 11 ~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~ 63 (93)
.||.|.+-|+..-+ .+--.|..-| +|-+.+|.+.+|.+-...+|.+..++
T Consensus 2 ~IimGS~SD~~~~~--~a~~~L~~~g-i~~dv~V~SaHRtp~~~~~~~~~a~~ 51 (156)
T TIGR01162 2 GIIMGSDSDLPTMK--KAADILEEFG-IPYELRVVSAHRTPELMLEYAKEAEE 51 (156)
T ss_pred EEEECcHhhHHHHH--HHHHHHHHcC-CCeEEEEECcccCHHHHHHHHHHHHH
Confidence 58999999997543 4444554445 57789999999988766677766553
No 233
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=26.87 E-value=65 Score=22.35 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=21.0
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRK 50 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~ 50 (93)
+.+|.||||-++..-. ..|.+.| .++++++|+
T Consensus 2 ~~lItG~sg~iG~~la----~~l~~~G-----~~v~~~~r~ 33 (242)
T TIGR01829 2 IALVTGGMGGIGTAIC----QRLAKDG-----YRVAANCGP 33 (242)
T ss_pred EEEEECCCChHHHHHH----HHHHHCC-----CEEEEEeCC
Confidence 5789999999986543 2333344 467777774
No 234
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=26.87 E-value=96 Score=16.00 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHH
Q 037431 27 QALFALYYSGFLPENAGIVSYSRKNLIDEDLRSI 60 (93)
Q Consensus 27 PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~ 60 (93)
.+++++.+.|.+|. .+.- -++.-++.++...+
T Consensus 15 ~tl~~~~~~g~~~~-~~~~-~~~~~~~~~ei~~~ 46 (49)
T cd04762 15 STLRRWVKEGKLKA-IRTP-GGHRRFPEEDLERL 46 (49)
T ss_pred HHHHHHHHcCCCCc-eeCC-CCceecCHHHHHHH
Confidence 57899999999874 3322 25556777776654
No 235
>PLN02253 xanthoxin dehydrogenase
Probab=26.45 E-value=1.7e+02 Score=21.10 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=22.0
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||+|.++.--. .. |.+.| .+|+.++|+.
T Consensus 19 k~~lItGas~gIG~~la-~~---l~~~G-----~~v~~~~~~~ 52 (280)
T PLN02253 19 KVALVTGGATGIGESIV-RL---FHKHG-----AKVCIVDLQD 52 (280)
T ss_pred CEEEEECCCchHHHHHH-HH---HHHcC-----CEEEEEeCCH
Confidence 36899999999985322 22 23334 5677777764
No 236
>PRK12367 short chain dehydrogenase; Provisional
Probab=26.41 E-value=51 Score=24.16 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=23.2
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||+|.+++.-. .. |.+.| .+++.++|+.
T Consensus 15 k~~lITGas~gIG~ala-~~---l~~~G-----~~Vi~~~r~~ 48 (245)
T PRK12367 15 KRIGITGASGALGKALT-KA---FRAKG-----AKVIGLTHSK 48 (245)
T ss_pred CEEEEEcCCcHHHHHHH-HH---HHHCC-----CEEEEEECCc
Confidence 46899999999986433 22 23334 5788888875
No 237
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=25.51 E-value=2.2e+02 Score=19.68 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=13.4
Q ss_pred eEEEEEccchHhhhHh
Q 037431 9 LCIAVIGATGELARRK 24 (93)
Q Consensus 9 ~~~VIFGatGDLA~RK 24 (93)
-+++|.||||.++..-
T Consensus 7 ~~vlItGa~g~iG~~l 22 (245)
T PRK12936 7 RKALVTGASGGIGEEI 22 (245)
T ss_pred CEEEEECCCChHHHHH
Confidence 4799999999998663
No 238
>PRK08278 short chain dehydrogenase; Provisional
Probab=25.46 E-value=55 Score=23.90 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=23.1
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
-+++|.||+|-++..-. ..|.+.| .+|+.++|+..
T Consensus 7 k~vlItGas~gIG~~ia----~~l~~~G-----~~V~~~~r~~~ 41 (273)
T PRK08278 7 KTLFITGASRGIGLAIA----LRAARDG-----ANIVIAAKTAE 41 (273)
T ss_pred CEEEEECCCchHHHHHH----HHHHHCC-----CEEEEEecccc
Confidence 36899999999875432 2233334 57888888754
No 239
>PRK07856 short chain dehydrogenase; Provisional
Probab=25.41 E-value=56 Score=23.24 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=21.2
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||||-+++.-. ..| .+.| .+++.++|+.
T Consensus 7 k~~lItGas~gIG~~la-~~l---~~~g-----~~v~~~~r~~ 40 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIA-RAF---LAAG-----ATVVVCGRRA 40 (252)
T ss_pred CEEEEeCCCchHHHHHH-HHH---HHCC-----CEEEEEeCCh
Confidence 46899999999986443 222 2333 3566666654
No 240
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=25.25 E-value=1.9e+02 Score=20.63 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=22.6
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-.++|.||+|.++..- ...|.+.| .+|+.++|+.
T Consensus 7 k~vlVtGas~gIG~~i----a~~l~~~G-----~~V~~~~r~~ 40 (263)
T PRK06200 7 QVALITGGGSGIGRAL----VERFLAEG-----ARVAVLERSA 40 (263)
T ss_pred CEEEEeCCCchHHHHH----HHHHHHCC-----CEEEEEeCCH
Confidence 3689999999998542 22233344 4678888864
No 241
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=25.12 E-value=2.2e+02 Score=19.07 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=37.5
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC------CChHHHHHHHHH
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN------LIDEDLRSITAS 63 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~------~s~~~~~~~v~~ 63 (93)
....+|.|-||.== -++-+|.|-.|+++- -..++.|||++... -+.++.++++++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~-~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~ 82 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKY-KDRGLVVLGFPCNQFGGQEPGSNEEIKEFCET 82 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHh-cCCCEEEEEeccCccccCCCCCHHHHHHHHHH
Confidence 35567778888766 566679999998753 23579999998643 234556666554
No 242
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.09 E-value=47 Score=26.60 Aligned_cols=75 Identities=21% Similarity=0.127 Sum_probs=50.9
Q ss_pred EccchHhhhHhhHHHHHHHHHcCCCC-CCeeEEE-----EeCCCCChHHHHHHHHHHhhcccC---CccChhHHHhhcCC
Q 037431 14 IGATGELARRKIFQALFALYYSGFLP-ENAGIVS-----YSRKNLIDEDLRSITASVLSCRID---HLYGSHAAIQIQVP 84 (93)
Q Consensus 14 FGatGDLA~RKL~PAL~~L~~~g~Lp-~~~~Iig-----~aR~~~s~~~~~~~v~~~l~~~~~---~~e~~~~~~~~~~~ 84 (93)
++-||+|--...++++.++.....-. +.+-.|+ +.+.+...++.+..+++.+..+++ +++.+.=++|-++|
T Consensus 12 ~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~ 91 (314)
T COG0180 12 IQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQSEVP 91 (314)
T ss_pred CCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccEEEEccCch
Confidence 45699999999999999999876553 3333322 114444347788888887777654 55666667888888
Q ss_pred ceeE
Q 037431 85 AIQF 88 (93)
Q Consensus 85 ~~~~ 88 (93)
.+.-
T Consensus 92 e~~e 95 (314)
T COG0180 92 EHAE 95 (314)
T ss_pred HHHH
Confidence 7543
No 243
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=24.73 E-value=1.7e+02 Score=21.78 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=32.5
Q ss_pred CeEEEEEccchHhhh---HhhHHHHH-HHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhh
Q 037431 8 SLCIAVIGATGELAR---RKIFQALF-ALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLS 66 (93)
Q Consensus 8 ~~~~VIFGatGDLA~---RKL~PAL~-~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~ 66 (93)
.++.||+||.|=|.. .+.+.-.+ .......+....-++|.+-.+......+..++..++
T Consensus 64 ~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~giGP~~~~~~r~~~~~~l~ 126 (298)
T TIGR03609 64 RADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGIGPLRRRLSRWLVRRVLR 126 (298)
T ss_pred HCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecccCCcCCHHHHHHHHHHHc
Confidence 457889999876642 22211111 111122233457888888877776555555555554
No 244
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=24.43 E-value=37 Score=23.74 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=11.9
Q ss_pred CeEEEEEccchHhhh
Q 037431 8 SLCIAVIGATGELAR 22 (93)
Q Consensus 8 ~~~~VIFGatGDLA~ 22 (93)
.-.+.|.||||+++.
T Consensus 102 ~~e~~VVGGTG~Fr~ 116 (144)
T PF03018_consen 102 VRELAVVGGTGEFRM 116 (144)
T ss_pred ccEEeEecCCCeEcc
Confidence 345789999999874
No 245
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=24.20 E-value=1.8e+02 Score=21.08 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=29.2
Q ss_pred hHhhhHhhHHHHHHHHHc-CCCCCCeeEEEEeCCCCC
Q 037431 18 GELARRKIFQALFALYYS-GFLPENAGIVSYSRKNLI 53 (93)
Q Consensus 18 GDLA~RKL~PAL~~L~~~-g~Lp~~~~Iig~aR~~~s 53 (93)
.=+...+.+-.|..|-+. |++|+.+.++|+.+.+.+
T Consensus 21 ~~~~~~~~~~~l~~W~~~~~l~p~~S~~~gI~~ddP~ 57 (154)
T COG3449 21 DPATLKQTFEQLIAWRRENGLLPEQSETLGIYQDDPD 57 (154)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCC
Confidence 446677888888888876 667777999999998876
No 246
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.97 E-value=2.2e+02 Score=18.61 Aligned_cols=12 Identities=0% Similarity=0.171 Sum_probs=5.8
Q ss_pred CCeeEEEEeCCC
Q 037431 40 ENAGIVSYSRKN 51 (93)
Q Consensus 40 ~~~~Iig~aR~~ 51 (93)
++.-||.+|-++
T Consensus 41 pd~vvi~~G~ND 52 (157)
T cd01833 41 PDVVLLHLGTND 52 (157)
T ss_pred CCEEEEeccCcc
Confidence 345555555444
No 247
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=23.94 E-value=2.6e+02 Score=21.88 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=27.3
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCC--CCeeEEEEeCCC
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLP--ENAGIVSYSRKN 51 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp--~~~~Iig~aR~~ 51 (93)
|..+.|.||+|-++..-. +.|...+... +...|+.+.+..
T Consensus 2 ~~kV~I~GAaG~VG~~la----~~L~~~~~~~~~~~~el~L~D~~~ 43 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLL----PMIAKGDVFGPDQPVILHLLDIPP 43 (325)
T ss_pred CeEEEEECCCCHHHHHHH----HHHHhCcccCCCCCcEEEEEEcCC
Confidence 788999999999997655 3455555432 334677777643
No 248
>PRK06484 short chain dehydrogenase; Validated
Probab=23.86 E-value=99 Score=24.71 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=23.6
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
.-+++|.||++.++..-. -.|.+.| .+|+.++|+.
T Consensus 5 ~k~~lITGas~gIG~aia----~~l~~~G-----~~V~~~~r~~ 39 (520)
T PRK06484 5 SRVVLVTGAAGGIGRAAC----QRFARAG-----DQVVVADRNV 39 (520)
T ss_pred CeEEEEECCCcHHHHHHH----HHHHHCC-----CEEEEEeCCH
Confidence 457899999999886522 2233334 5788888864
No 249
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=23.70 E-value=1.9e+02 Score=20.59 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=26.5
Q ss_pred EEEccchHhhhHhhHHHHHHHHHcCC-CCCCeeEEEEeCCCCCh
Q 037431 12 AVIGATGELARRKIFQALFALYYSGF-LPENAGIVSYSRKNLID 54 (93)
Q Consensus 12 VIFGatGDLA~RKL~PAL~~L~~~g~-Lp~~~~Iig~aR~~~s~ 54 (93)
.||..+...| +.++..+...|. +|++..|+|++-.++..
T Consensus 183 ai~~~~d~~a----~g~~~~l~~~g~~vP~di~vvg~d~~~~~~ 222 (269)
T cd06297 183 AVFASADQQA----LGALQEAVELGLTVGEDVRVVGFDDHPFAR 222 (269)
T ss_pred EEEEcCcHHH----HHHHHHHHHcCCCCCCceEEEEECCchhhc
Confidence 4444555555 455566667775 79999999998776543
No 250
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=23.63 E-value=37 Score=20.64 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=10.8
Q ss_pred cchHhhhHhhHHHH
Q 037431 16 ATGELARRKIFQAL 29 (93)
Q Consensus 16 atGDLA~RKL~PAL 29 (93)
++|||++=|-+=+-
T Consensus 12 asGDLa~MK~l~~~ 25 (53)
T PF08898_consen 12 ASGDLAQMKALAAQ 25 (53)
T ss_pred HcCcHHHHHHHHHH
Confidence 68999998876553
No 251
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=23.60 E-value=2.9e+02 Score=19.94 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=29.6
Q ss_pred EEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHHHhhc
Q 037431 13 VIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITASVLSC 67 (93)
Q Consensus 13 IFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~~l~~ 67 (93)
|-||||=|+...| .+|.+.+. ..+|+++.|.. +..+-.+.+.+.+..
T Consensus 1 lTGaTGflG~~ll----~~Ll~~~~---~~~I~cLvR~~-~~~~~~~rl~~~l~~ 47 (249)
T PF07993_consen 1 LTGATGFLGSHLL----EELLRQPP---DVKIYCLVRAS-SSQSALERLKDALKE 47 (249)
T ss_dssp EE-TTSHHHHHHH----HHHHHHS----TTEEEEEE-SS-SHHHHHHHHHGGG-S
T ss_pred CcCCCcHHHHHHH----HHHHcCCC---CcEEEEEEeCc-ccccchhhhhhhccc
Confidence 5799999998765 46666653 23999999966 455556666655543
No 252
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=23.36 E-value=1.8e+02 Score=21.86 Aligned_cols=34 Identities=6% Similarity=0.175 Sum_probs=22.4
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
.++|+||||=++...+ ..| ..++ +..|+|+.|+.
T Consensus 3 ~ilVtGatGfiGs~l~-~~L---~~~~----~~~V~~~~r~~ 36 (347)
T PRK11908 3 KVLILGVNGFIGHHLS-KRI---LETT----DWEVYGMDMQT 36 (347)
T ss_pred EEEEECCCcHHHHHHH-HHH---HhCC----CCeEEEEeCcH
Confidence 5899999999986543 332 2222 35788887754
No 253
>smart00719 Plus3 Short conserved domain in transcriptional regulators. Plus3 domains occur in the Saccharomyces cerevisiae Rtf1p protein, which interacts with Spt6p, and in parsley CIP, which interacts with the bZIP protein CPRF1.
Probab=23.12 E-value=1.1e+02 Score=20.30 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=23.7
Q ss_pred cCCCCCCeeEEEEeCCCCChHHHHHHHHH
Q 037431 35 SGFLPENAGIVSYSRKNLIDEDLRSITAS 63 (93)
Q Consensus 35 ~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~ 63 (93)
.|.....+.+..++.++.+++||..|...
T Consensus 79 ~g~~~~~~~i~~iSn~~fte~E~~~w~~~ 107 (109)
T smart00719 79 NGDSEKVVQINFISNQDFTEEEFQRWKQA 107 (109)
T ss_pred cCCceEEEEEEEecCCCCCHHHHHHHHHH
Confidence 35555679999999999999999998553
No 254
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=23.00 E-value=66 Score=20.69 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=21.3
Q ss_pred EEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEE
Q 037431 10 CIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSY 47 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~ 47 (93)
.-|+|+|.||+ |.++=+++.+.+...- ...+|.-.
T Consensus 25 ~~iLl~G~gD~--Rhvl~Tl~~~~~~~~~-~~l~~~l~ 59 (100)
T PF14737_consen 25 LNILLLGCGDL--RHVLKTLASLPRSYDG-RKLHFTLN 59 (100)
T ss_pred ceEEEecCccH--HHHHHHHHhcccCccc-ceeEEEEe
Confidence 34677789998 5566677666654422 23555544
No 255
>COG3875 Uncharacterized conserved protein [Function unknown]
Probab=22.87 E-value=2.1e+02 Score=24.04 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=33.1
Q ss_pred hHhhHHHHHHHHHcCCCC-CCeeEE-EEe-CCCCChHHHHHHHHHHhhccc
Q 037431 22 RRKIFQALFALYYSGFLP-ENAGIV-SYS-RKNLIDEDLRSITASVLSCRI 69 (93)
Q Consensus 22 ~RKL~PAL~~L~~~g~Lp-~~~~Ii-g~a-R~~~s~~~~~~~v~~~l~~~~ 69 (93)
.+++.|.|+.-.+.|-.+ .+..|| +.| .++++.|||.+.+-+.+.++.
T Consensus 82 t~~Iap~L~reL~~gg~~d~ni~ii~A~G~Hrt~t~EEf~kklGeei~kr~ 132 (423)
T COG3875 82 TKKIAPNLLRELYLGGAKDENITIIFALGLHRTQTEEEFEKKLGEEIVKRI 132 (423)
T ss_pred hhhhhHHHHHHHHhcCCCcccEEEEEeccccCcccHHHHHHHHhHHHHhhc
Confidence 478999999988775555 344442 332 457789999998887776543
No 256
>PLN00198 anthocyanidin reductase; Provisional
Probab=22.82 E-value=1e+02 Score=23.11 Aligned_cols=35 Identities=31% Similarity=0.300 Sum_probs=22.7
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
-+++|.||||=++.... ..| ...| .+|+++.|+..
T Consensus 10 ~~vlItG~~GfIG~~l~-~~L---~~~g-----~~V~~~~r~~~ 44 (338)
T PLN00198 10 KTACVIGGTGFLASLLI-KLL---LQKG-----YAVNTTVRDPE 44 (338)
T ss_pred CeEEEECCchHHHHHHH-HHH---HHCC-----CEEEEEECCCC
Confidence 35899999998876533 332 3333 46777777654
No 257
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=22.61 E-value=1.2e+02 Score=23.20 Aligned_cols=34 Identities=9% Similarity=0.206 Sum_probs=23.1
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||||=++.-.+ .. |...| ..|+++.|..
T Consensus 16 ~~vlVtGatGfiG~~lv-~~---L~~~g-----~~V~~~d~~~ 49 (348)
T PRK15181 16 KRWLITGVAGFIGSGLL-EE---LLFLN-----QTVIGLDNFS 49 (348)
T ss_pred CEEEEECCccHHHHHHH-HH---HHHCC-----CEEEEEeCCC
Confidence 46999999999986533 22 23333 4688888754
No 258
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=22.48 E-value=1.6e+02 Score=20.87 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=23.3
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
.-+++|.||+|-++..-. ..|.+.| .+|+.++|++
T Consensus 8 ~k~vlVtGas~gIG~~la----~~l~~~G-----~~v~~~~r~~ 42 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVA----LRAAAEG-----ARVVLVDRSE 42 (260)
T ss_pred CCEEEEeCCCchHHHHHH----HHHHHCC-----CEEEEEeCch
Confidence 346899999999885433 2233334 5678888864
No 259
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=22.08 E-value=54 Score=18.03 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=8.6
Q ss_pred EEEEEccchH
Q 037431 10 CIAVIGATGE 19 (93)
Q Consensus 10 ~~VIFGatGD 19 (93)
.++||||.++
T Consensus 3 ~~~vfGG~~~ 12 (49)
T PF13415_consen 3 KLYVFGGYDD 12 (49)
T ss_pred EEEEECCcCC
Confidence 5899999886
No 260
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=21.71 E-value=3e+02 Score=22.79 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=29.7
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEE
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSY 47 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~ 47 (93)
.-++|+|++| |++--|+-|+.+-..... ++.+++.+
T Consensus 114 nplfi~G~~G-lGKTHLl~Aign~~~~~~--~~a~v~y~ 149 (408)
T COG0593 114 NPLFIYGGVG-LGKTHLLQAIGNEALANG--PNARVVYL 149 (408)
T ss_pred CcEEEECCCC-CCHHHHHHHHHHHHHhhC--CCceEEec
Confidence 4589999999 999999999999987653 35777766
No 261
>PRK08324 short chain dehydrogenase; Validated
Probab=21.58 E-value=68 Score=27.32 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=23.6
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
-.++|.||+|-++..-. ..|.+.| .+|+.++|+..
T Consensus 423 k~vLVTGasggIG~~la----~~L~~~G-----a~Vvl~~r~~~ 457 (681)
T PRK08324 423 KVALVTGAAGGIGKATA----KRLAAEG-----ACVVLADLDEE 457 (681)
T ss_pred CEEEEecCCCHHHHHHH----HHHHHCc-----CEEEEEeCCHH
Confidence 46899999999985432 2233334 46888888763
No 262
>PRK05717 oxidoreductase; Validated
Probab=21.49 E-value=84 Score=22.36 Aligned_cols=34 Identities=18% Similarity=0.025 Sum_probs=22.1
Q ss_pred eEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 9 LCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 9 ~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
-+++|.||+|.+++--. ..|.+.| .+++.++|+.
T Consensus 11 k~vlItG~sg~IG~~~a----~~l~~~g-----~~v~~~~~~~ 44 (255)
T PRK05717 11 RVALVTGAARGIGLGIA----AWLIAEG-----WQVVLADLDR 44 (255)
T ss_pred CEEEEeCCcchHHHHHH----HHHHHcC-----CEEEEEcCCH
Confidence 36899999999986443 2333444 4567676654
No 263
>COG5625 Predicted transcription regulator containing HTH domain [Transcription]
Probab=21.13 E-value=1.4e+02 Score=20.71 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=37.8
Q ss_pred HhhhHhhHHHHHHHHHcCCCCC---CeeEEEEeCCCCChHHHHHHHHHHhhcc
Q 037431 19 ELARRKIFQALFALYYSGFLPE---NAGIVSYSRKNLIDEDLRSITASVLSCR 68 (93)
Q Consensus 19 DLA~RKL~PAL~~L~~~g~Lp~---~~~Iig~aR~~~s~~~~~~~v~~~l~~~ 68 (93)
|++.|-..-++-.|++.|++.. ...|+|+.-+.-+..+-.+.+++.+...
T Consensus 47 ~is~rtvr~~v~~l~rrGll~relvqkgWvGYiya~~~P~k~leei~~~i~ke 99 (113)
T COG5625 47 GISERTVRAAVAVLLRRGLLARELVQKGWVGYIYATTPPPKPLEEIEEEIMKE 99 (113)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhccceeeEecCCCCchHHHHHHHHHHHH
Confidence 5778888899999999998752 3469999988888777666666655443
No 264
>PF08024 Antimicrobial_4: Ant antimicrobial peptide; InterPro: IPR012523 This family consists of the ponericin family of antimicrobial peptides isolated from predatory ant Pachycondyla goeldii (Ponerine ant). The ponericin peptides may adopt amphipathic alpha-helical structure in polar environments. In the ant colony, these peptides exhibit a defensive role against microbial pathogens arising from prey introduction and/or ingestion [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=20.87 E-value=90 Score=16.09 Aligned_cols=13 Identities=8% Similarity=0.427 Sum_probs=10.4
Q ss_pred HhhHHHHHHHHHc
Q 037431 23 RKIFQALFALYYS 35 (93)
Q Consensus 23 RKL~PAL~~L~~~ 35 (93)
-|++|++..+++.
T Consensus 9 ~Kl~P~vvgm~kk 21 (24)
T PF08024_consen 9 AKLLPSVVGMFKK 21 (24)
T ss_pred HHHhHHHHHHHHH
Confidence 4889999998843
No 265
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=20.81 E-value=1.5e+02 Score=24.38 Aligned_cols=34 Identities=26% Similarity=0.550 Sum_probs=23.0
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEE
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSY 47 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~ 47 (93)
-++++|.|||| =.|.-|+-|| .+..|++-+||.+
T Consensus 173 r~NILisGGTG-SGKTTlLNal-----~~~i~~~eRvIti 206 (355)
T COG4962 173 RCNILISGGTG-SGKTTLLNAL-----SGFIDSDERVITI 206 (355)
T ss_pred ceeEEEeCCCC-CCHHHHHHHH-----HhcCCCcccEEEE
Confidence 47899999999 3444444433 3566766788876
No 266
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=20.80 E-value=80 Score=22.94 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=11.8
Q ss_pred EEEEEccchHhhhHhh
Q 037431 10 CIAVIGATGELARRKI 25 (93)
Q Consensus 10 ~~VIFGatGDLA~RKL 25 (93)
.++|+|| |+.|.||+
T Consensus 12 ~vLVIGg-G~va~~ka 26 (202)
T PRK06718 12 RVVIVGG-GKVAGRRA 26 (202)
T ss_pred EEEEECC-CHHHHHHH
Confidence 5777777 99998875
No 267
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=20.76 E-value=2e+02 Score=23.15 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=29.0
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCC
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLI 53 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s 53 (93)
..-.+++-||||=+|..-+ ..+|-++..+.|+.|++-+
T Consensus 5 ~~~~VcVTGAsGfIgswiv---------k~LL~rGY~V~gtVR~~~~ 42 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIV---------KLLLSRGYTVRGTVRDPED 42 (327)
T ss_pred CCcEEEEeCCchHHHHHHH---------HHHHhCCCEEEEEEcCcch
Confidence 4457899999999886543 4455566789999998865
No 268
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=20.44 E-value=2.1e+02 Score=17.24 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=22.3
Q ss_pred EEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEE-EEeCCCC
Q 037431 11 IAVIGATGELARRKIFQALFALYYSGFLPENAGIV-SYSRKNL 52 (93)
Q Consensus 11 ~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Ii-g~aR~~~ 52 (93)
+.+. |+|.++...+ ..|.+.|. + ..+|+ +++|++-
T Consensus 2 I~iI-G~G~mg~al~----~~l~~~g~-~-~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 2 IGII-GAGNMGSALA----RGLLASGI-K-PHEVIIVSSRSPE 37 (96)
T ss_dssp EEEE-STSHHHHHHH----HHHHHTTS---GGEEEEEEESSHH
T ss_pred EEEE-CCCHHHHHHH----HHHHHCCC-C-ceeEEeeccCcHH
Confidence 4445 7899998776 45566776 3 45666 5577653
No 269
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=20.42 E-value=1.8e+02 Score=16.29 Aligned_cols=41 Identities=12% Similarity=-0.102 Sum_probs=33.3
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCC
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKN 51 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~ 51 (93)
...+|.|++++.-.-+++.|.|-.+... ..+..++.+....
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~---~~~~~~~~i~~~~ 51 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE---YPKVKFVKVDVDE 51 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH---CCCceEEEEECCC
Confidence 5679999999999999999999998877 3467777776544
No 270
>PLN00016 RNA-binding protein; Provisional
Probab=20.37 E-value=64 Score=24.96 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=25.4
Q ss_pred CeEEEEE----ccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCC
Q 037431 8 SLCIAVI----GATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLI 53 (93)
Q Consensus 8 ~~~~VIF----GatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s 53 (93)
+-+++|. ||||-++.... .. |.+.| ..|+++.|+...
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv-~~---L~~~G-----~~V~~l~R~~~~ 92 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLA-KE---LVKAG-----HEVTLFTRGKEP 92 (378)
T ss_pred cceEEEEeccCCCceeEhHHHH-HH---HHHCC-----CEEEEEecCCcc
Confidence 3468899 99999986654 33 33444 578888887643
No 271
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=20.33 E-value=65 Score=21.92 Aligned_cols=29 Identities=28% Similarity=0.237 Sum_probs=17.0
Q ss_pred CCeEEEEEccchHhhhHhhHHHHHHHHHcC
Q 037431 7 SSLCIAVIGATGELARRKIFQALFALYYSG 36 (93)
Q Consensus 7 ~~~~~VIFGatGDLA~RKL~PAL~~L~~~g 36 (93)
..-.++|+||+|- .-=..+=.++.|++..
T Consensus 84 ~~~~i~v~Ga~Gg-R~DH~lanl~~l~~~~ 112 (123)
T PF04263_consen 84 GPDEIIVLGALGG-RFDHTLANLNLLYKYK 112 (123)
T ss_dssp TTSEEEEES-SSS-SHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCC-cHHHHHHHHHHHHHHH
Confidence 4558999999995 3334445555555433
No 272
>PRK09416 lstR lineage-specific thermal regulator protein; Provisional
Probab=20.19 E-value=67 Score=22.80 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=24.1
Q ss_pred chHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCC
Q 037431 17 TGELARRKIFQALFALYYSGFLPENAGIVSYSRKNL 52 (93)
Q Consensus 17 tGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~ 52 (93)
.-+++..-|+|.|.+|.++|++. ..+.+-.|+-.
T Consensus 72 ~~~~s~GtIYp~L~RLE~~GlI~--s~~~~~~RK~Y 105 (135)
T PRK09416 72 TFEGNEGSLYTLLHRLEQNRFIQ--SSWDHEGAKYY 105 (135)
T ss_pred cccCCCccHHHHHHHHHHCCCeE--EeecCCCceEE
Confidence 34677888999999999999984 33444444433
No 273
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=20.05 E-value=2.6e+02 Score=21.70 Aligned_cols=47 Identities=11% Similarity=0.052 Sum_probs=30.8
Q ss_pred CeEEEEEccchHhhhHhhHHHHHHHHHcCCCCCCeeEEEEeCCCCChHHHHHHHHH
Q 037431 8 SLCIAVIGATGELARRKIFQALFALYYSGFLPENAGIVSYSRKNLIDEDLRSITAS 63 (93)
Q Consensus 8 ~~~~VIFGatGDLA~RKL~PAL~~L~~~g~Lp~~~~Iig~aR~~~s~~~~~~~v~~ 63 (93)
.-.++|-|||+.+++-. -..+.. ++..+|-++|+.---++..+.+++
T Consensus 6 ~~~~lITGASsGIG~~~-----A~~lA~----~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 6 GKTALITGASSGIGAEL-----AKQLAR----RGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CcEEEEECCCchHHHHH-----HHHHHH----CCCEEEEEeCcHHHHHHHHHHHHH
Confidence 34689999999998642 222222 247888899977555566556554
Done!