BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037432
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 1 MKLEKTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQA 60
+L+ + LASS VV+FS + C C K+LL +G +VELD G ++Q+
Sbjct: 4 QELDAALKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQS 63
Query: 61 VLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGA 108
L + G TVP +F+GGK +GG +T++ H L+PLL+DA A
Sbjct: 64 ALAHWTGRG---TVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 108
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 1 MKLEKTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQA 60
+L+ + LASS VV+FS + C C K+LL +G +VELD G ++Q+
Sbjct: 5 QELDAALKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQS 64
Query: 61 VLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGA 108
L + G TVP +F+GGK +GG +T++ H L+PLL+DA A
Sbjct: 65 ALAHWTGRG---TVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 109
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 15 SSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTV 74
S N VV+FS + C CT+AK+L + V +VELD G + Q L++++ +TV
Sbjct: 47 SDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTG---ERTV 103
Query: 75 PAIFVGGKFLGGIETLMACHINGTLVPLL 103
P IFV G F+GG H G L+PL+
Sbjct: 104 PRIFVNGTFIGGATDTHRLHKEGKLLPLV 132
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 15 SSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTV 74
S N VV+FS + C CT+AK+L + V +VELD G + Q L++++ +TV
Sbjct: 33 SDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTG---ERTV 89
Query: 75 PAIFVGGKFLGGIETLMACHINGTLVPLL 103
P IFV G F+GG H G L+PL+
Sbjct: 90 PRIFVNGTFIGGATDTHRLHKEGKLLPLV 118
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 15 SSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTV 74
S N VV+FS + C CT+AK+L + V +VELD G + Q L++++ +TV
Sbjct: 25 SDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTG---ERTV 81
Query: 75 PAIFVGGKFLGGIETLMACHINGTLVPLL 103
P IFV G F+GG H G L+PL+
Sbjct: 82 PRIFVNGTFIGGATDTHRLHKEGKLLPLV 110
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 8 EIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVA-GREIQAVLFQLS 66
+ V + N VV++S + C + K L L V P +VELD A G +IQ VL +L+
Sbjct: 9 DAVKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLT 68
Query: 67 SNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGA 108
GQH TVP +F+GGK +GG + + G L PLL +A A
Sbjct: 69 --GQH-TVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEANA 107
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 8 EIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDH-HVAGREIQAVLFQLS 66
E + + N VV++S + C CT K L LGV P +VELD G ++Q VL +L+
Sbjct: 10 ESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLT 69
Query: 67 SNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGA 108
GQH TVP +FV GK +GG + + G L +L +A
Sbjct: 70 --GQH-TVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEANG 108
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 13 LASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQ 72
L + VV+FS S C T K L SLGV ++ELD G +Q VL ++++ +
Sbjct: 13 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITN---QK 69
Query: 73 TVPAIFVGGKFLGGIETLMACHINGTLVPLLK-----DAGALWL 111
TVP IFV +GG + + +G L LL+ DA L+
Sbjct: 70 TVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQEDLAYDAENLYF 113
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 15 SSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTV 74
S AV+LFS + C C K +L + +ELD G IQ L S + +TV
Sbjct: 16 DSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFS---KIETV 72
Query: 75 PAIFVGGKFLGGIETLMACHINGTLVPLLKDA 106
P +FV GKF+G +T++ + N L ++ ++
Sbjct: 73 PQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 15 SSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTV 74
S AV+LFS + C C K +L + +ELD G IQ L S + +TV
Sbjct: 16 DSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFS---KIETV 72
Query: 75 PAIFVGGKFLGGIETLMACHINGTLVPLLKDA 106
P +FV GKF+G +T++ + N L ++ ++
Sbjct: 73 PQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 6 TYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQL 65
T + + S AV+LFS + C C K +L + +ELD G IQ L
Sbjct: 7 TSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASF 66
Query: 66 SSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLKDA 106
S + +TVP +FV GKF+G +T++ + N L ++ ++
Sbjct: 67 S---KIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF 78
V +++ C C AK LL S GV + +D + A RE ++ TVP IF
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKRE------EMIKRSGRTTVPQIF 56
Query: 79 VGGKFLGGIETLMACHINGTLVPLLK 104
+ + +GG + L A G L PLLK
Sbjct: 57 IDAQHIGGYDDLYALDARGGLDPLLK 82
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 1 MKLEKTYEIVTHLASSNAVVLFSISGCCMCTVAKRLL---FSLGVGPTIVELDHHVAGRE 57
++K Y ++ L+ +++FS S C K LL + I+ELD H G E
Sbjct: 1 FNVQKEYSLILDLS---PIIIFSKSTCSYSKGXKELLENEYQFIPNYYIIELDKHGHGEE 57
Query: 58 IQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLK 104
+Q + ++ G TVP + V G GG E + H G L+ L+
Sbjct: 58 LQEYIKLVTGRG---TVPNLLVNGVSRGGNEEIKKLHTQGKLLESLQ 101
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 4 EKTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPT----IVELDHHVAGREIQ 59
++T + V L + N + + S + C C A LF P +++L+ G +IQ
Sbjct: 12 QETIKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQ 71
Query: 60 AVLFQLSSNGQHQTVPAIFVGGKFLGGIETL 90
A L+++ NGQ +TVP I++ GK +GG + L
Sbjct: 72 AALYEI--NGQ-RTVPNIYINGKHIGGNDDL 99
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 10 VTHLASSNAVVLFSISGCCMCTVAKRLLF-SLGVGPT---IVELDHHVAGREIQAVLFQL 65
V L V + + + C C LF L V + ++ELD G EIQ L ++
Sbjct: 10 VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEI 69
Query: 66 SSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLK 104
S GQ +TVP +++ GK +GG L NG L +LK
Sbjct: 70 S--GQ-KTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 105
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF 78
V +++ C AK LL S GV + +D + A RE ++ TVP IF
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGVSFQELPIDGNAAKRE------EMIKRSGRTTVPQIF 56
Query: 79 VGGKFLGGIETLMACHINGTLVPLLK 104
+ + +GG + L A G L PLLK
Sbjct: 57 IDAQHIGGYDDLYALDARGGLDPLLK 82
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 10 VTHLASSNAVVLFSISGCCMCTVAKRLLF-SLGVGPT---IVELDHHVAGREIQAVLFQL 65
V L V + + + C C LF L V + ++ELD G EIQ L ++
Sbjct: 30 VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEI 89
Query: 66 SSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLK 104
S GQ +TVP +++ GK +GG L NG L +LK
Sbjct: 90 S--GQ-KTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 125
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 14 ASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQT 73
S ++L++ C C A+ LL GV T ++ A ++ + Q +NG++ T
Sbjct: 3 GSMKEIILYTRPNCPYCKRARDLLDKKGVKYTDID-----ASTSLRQEMVQ-RANGRN-T 55
Query: 74 VPAIFVGGKFLGGIETLMACHINGTLVPLLKD 105
P IF+G +GG + L A G L LL+D
Sbjct: 56 FPQIFIGDYHVGGCDDLYALENKGKLDSLLQD 87
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 46 IVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLK 104
++ELD G EIQ L ++S GQ +TVP +++ GK +GG L NG L +LK
Sbjct: 53 VLELDEMSNGSEIQDALEEIS--GQ-KTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 108
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 8 EIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGR---EIQAVLFQ 64
E V VV+F C C A+ +L L + ++E A EIQ L Q
Sbjct: 4 EFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQ 63
Query: 65 LSSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGALW 110
L+ +TVP +F+G +GG L++ +G L+ LK GAL
Sbjct: 64 LTG---ARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ 106
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 4 EKTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPT----IVELDHHVAGREIQ 59
++T + V L + N + + S + C A LF P +++L+ G +IQ
Sbjct: 4 QETIKHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQ 63
Query: 60 AVLFQLSSNGQHQTVPAIFVGGKFLGGIETLM 91
A L+++ NGQ +TVP I++ GK +GG + L
Sbjct: 64 AALYEI--NGQ-RTVPNIYINGKHIGGNDDLQ 92
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF 78
V++++ GC C AK LL G E+D A E++A + + S T P IF
Sbjct: 8 VIIYTRPGCPYCARAKALLARKGA--EFNEIDAS-ATPELRAEMQERSG---RNTFPQIF 61
Query: 79 VGGKFLGGIETLMACHINGTLVPLLK 104
+G +GG + L A G L LLK
Sbjct: 62 IGSVHVGGCDDLYALEDEGKLDSLLK 87
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 8 EIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGR---EIQAVLFQ 64
E V VV+F C A+ +L L + ++E A EIQ L Q
Sbjct: 3 EFVNSKIQPGKVVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQ 62
Query: 65 LSSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGALW 110
L+ +TVP +F+G +GG L++ +G L+ LK GAL
Sbjct: 63 LTG---ARTVPRVFIGKDSIGGSSDLVSLQQSGELLTRLKQIGALQ 105
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAG---REIQAVLFQLSSNGQHQTVP 75
VV+F C C + LL L ++E A EIQ L QL+ +TVP
Sbjct: 14 VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG---ARTVP 70
Query: 76 AIFVGGKFLGGIETLMACHINGTLVPLLKDAGAL 109
+F+G + +GG L + H G L+ L+ GA+
Sbjct: 71 RVFIGKECIGGCTDLESMHKRGELLTRLQQVGAV 104
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI 77
++ +F+ GC C AK+LL G+ + L H ++AV TVP +
Sbjct: 171 SISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDATIVSVRAV-------SGRTTVPQV 223
Query: 78 FVGGKFLGGIETL 90
F+GGK +GG + L
Sbjct: 224 FIGGKHIGGSDDL 236
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 1 MKLEKTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPT----IVELDHHVAGR 56
M ++T + V L + N + + S + C A LF P +++L+ G
Sbjct: 245 MVSQETIKHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGA 304
Query: 57 EIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETL 90
+IQA L+++ NGQ +TVP I++ GK +GG + L
Sbjct: 305 DIQAALYEI--NGQ-RTVPNIYINGKHIGGNDDL 335
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 73 TVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAG 107
T+P +++ G+F+GG + L+ H NG LV LK G
Sbjct: 76 TIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLG 110
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 8 EIVTHLASSNAVVLFSISGCCMCTVAKRLL--FSLGVGP-TIVELDHHVAGREIQAVLFQ 64
E V ++N V +F C C A +L FS G IV++ E++ Q
Sbjct: 10 EFVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQ 69
Query: 65 LSSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGAL 109
++ +TVP IF G +GG L+ L +L G L
Sbjct: 70 ITGG---KTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGVL 111
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 2 KLEKTYEIVTHLASSNAVVLFSISGC--CMCTVAKRLLFSLGVGPTIVELDHHVAGREIQ 59
KLE+ +++T+ AS V+LF C +K++L L E + E++
Sbjct: 5 KLEERLKVLTNKAS---VMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVR 61
Query: 60 AVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLK 104
L S+ T P ++V G+ +GG++ + NG L+P+L+
Sbjct: 62 QGLKAYSN---WPTYPQLYVKGELVGGLDIVKELKENGELLPILR 103
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 15 SSNAVVLF-----SISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNG 69
S VVLF C LL + GV P + + E++ + + S
Sbjct: 14 ESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFS--- 70
Query: 70 QHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGAL 109
+ T+P ++V +F+GG + + + +G L LL++A AL
Sbjct: 71 EWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEAQAL 110
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 14 ASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHH-VAGREIQAVLFQLSSNGQHQ 72
A S + +++ S C C A LL GV E + + G +NG+ +
Sbjct: 13 AVSAKIEIYTWSTCPFCMRALALLKRKGV-----EFQEYCIDGDNEAREAMAARANGK-R 66
Query: 73 TVPAIFVGGKFLGGIETLMACHINGTLVPLL 103
++P IF+ + +GG + + A G L PLL
Sbjct: 67 SLPQIFIDDQHIGGCDDIYALDGAGKLDPLL 97
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 73 TVPAIFVGGKFLGGIETLMACHINGTLVPLLK 104
T P ++V G +GG++ + NG L+P+LK
Sbjct: 70 TYPQLYVRGDLVGGLDIVKELKDNGELLPILK 101
>pdb|1EGO|A Chain A, Nmr Structure Of Oxidized Escherichia Coli Glutaredoxin:
Comparison With Reduced E. Coli Glutaredoxin And
Functionally Related Proteins
pdb|1EGR|A Chain A, Sequence-Specific 1h N.M.R. Assignments And
Determination Of The Three-Dimensional Structure Of
Reduced Escherichia Coli Glutaredoxin
Length = 85
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDH-HVAGREIQAVLFQLSSNGQHQTVPAI 77
V+F SGC C AK L L + + + I Q + +TVP I
Sbjct: 3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI 62
Query: 78 FVGGKFLGGIETLMA 92
FV + +GG A
Sbjct: 63 FVDQQHIGGYTDFAA 77
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 8 EIVTHLASSNAVVLFSISGCCMCTVAKRLL--FSLGVGP-TIVELDHHVAGREIQAVLFQ 64
E V ++N V +F C A +L FS G IV++ E++ Q
Sbjct: 10 EFVQQRLANNKVTIFVKYTXPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQ 69
Query: 65 LSSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGAL 109
++ +TVP IF G +GG L+ L +L G L
Sbjct: 70 ITGG---KTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGVL 111
>pdb|2LQO|A Chain A, Mrx1 Reduced
pdb|2LQQ|A Chain A, Oxidized Mrx1
Length = 92
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI 77
A+ +++ S C C K L + + V+++H+ A E F S NG ++TVP +
Sbjct: 5 ALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAE-----FVGSVNGGNRTVPTV 59
Query: 78 FVGGKFLGGIETLMACHINGTLVPLLKDAG 107
KF G TL + L+K AG
Sbjct: 60 ----KFADG-STLTNPSADEVKAKLVKIAG 84
>pdb|2QNI|A Chain A, Crystal Structure Of Uncharacterized Protein Atu0299
Length = 219
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 56 REIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGA 108
R ++AV L + Q P FVG GG+ TL+ CHI G + KD A
Sbjct: 140 RIVEAVKAVLDRHDARQ--PIAFVG---HGGVGTLLKCHIEGRGISRSKDQPA 187
>pdb|3NZN|A Chain A, The Crystal Structure Of The Glutaredoxin From
Methanosarcina Mazei Go1
pdb|3NZN|B Chain B, The Crystal Structure Of The Glutaredoxin From
Methanosarcina Mazei Go1
Length = 103
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDH 51
V+++ +S C C K+LL LGV V +D
Sbjct: 23 KVIMYGLSTCVWCKKTKKLLTDLGVDFDYVYVDR 56
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 64 QLSSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGA 108
+L T P ++V G+ +GG + ++ + G L L+K+ A
Sbjct: 61 ELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAA 105
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 64 QLSSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGALW 110
+L T P ++V G+ +GG + ++ + G L L+K+ A +
Sbjct: 81 ELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKY 127
>pdb|2FGT|A Chain A, Crystal Structure Of Yych From Bacillus Subtilis
Length = 417
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 34 KRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGG------- 86
KR +SLG P + G E++ +L + ++ + + IF+ + +
Sbjct: 326 KRPNYSLGTNPIKTSETELMGGSEVKMLLSKQTAYDTDK-IDQIFLAYQLVSTSTNDDPL 384
Query: 87 --IETLMACHINGTLVPLLKD 105
+E + A +NG +VP+ KD
Sbjct: 385 VELEPVWAMKVNGKIVPITKD 405
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 73 TVPAIFVGGKFLGGIETLMACHINGTL 99
T P +++GG+F GG + + G L
Sbjct: 73 TFPQLYIGGEFFGGCDITLEAFKTGEL 99
>pdb|1SGV|A Chain A, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
pdb|1SGV|B Chain B, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
Length = 316
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 54 AGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGA 108
A R++ A ++NG+ ++PA+ + G + AC +G ++ LL+D G+
Sbjct: 237 ARRDLTAAEASAAANGR--SLPAVGIDGVY-------AACDADGRVIALLRDEGS 282
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 77 IFVGGKFLGGIETLMACHINGTLVPLLKDAGALW 110
+F+G LG E L+ GTL L + GA W
Sbjct: 280 LFLGAGSLGSTELLVRARDTGTLPNLNSEVGAGW 313
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 77 IFVGGKFLGGIETLMACHINGTLVPLLKDAGALW 110
+F+G LG E L+ GTL L + GA W
Sbjct: 280 LFLGAGSLGSTELLVRARDTGTLPNLNSEVGAGW 313
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 77 IFVGGKFLGGIETLMACHINGTLVPLLKDAGALW 110
+F+G LG E L+ GTL L + GA W
Sbjct: 280 LFLGAGSLGSTELLVRARDTGTLPNLNSEVGAGW 313
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 77 IFVGGKFLGGIETLMACHINGTLVPLLKDAGALW 110
+F+G LG E L+ GTL L + GA W
Sbjct: 280 LFLGAGSLGSTELLVRARDTGTLPNLNSEVGAGW 313
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 77 IFVGGKFLGGIETLMACHINGTLVPLLKDAGALW 110
+F+G LG E L+ GTL L + GA W
Sbjct: 280 LFLGAGSLGSTELLVRARDTGTLPNLNSEVGAGW 313
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 77 IFVGGKFLGGIETLMACHINGTLVPLLKDAGALW 110
+F+G LG E L+ GTL L + GA W
Sbjct: 280 LFLGAGSLGSTELLVRARDTGTLPNLNSEVGAGW 313
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 77 IFVGGKFLGGIETLMACHINGTLVPLLKDAGALW 110
+F+G LG E L+ GTL L + GA W
Sbjct: 278 LFLGAGSLGSTELLVRARDTGTLPNLNSEVGAGW 311
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 77 IFVGGKFLGGIETLMACHINGTLVPLLKDAGALW 110
+F+G LG E L+ GTL L + GA W
Sbjct: 280 LFLGAGSLGSTELLVRARDTGTLPNLNSEVGAGW 313
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 77 IFVGGKFLGGIETLMACHINGTLVPLLKDAGALW 110
+F+G LG E L+ GTL L + GA W
Sbjct: 282 LFLGAGSLGSTELLVRARDTGTLPNLNSEVGAGW 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,134,402
Number of Sequences: 62578
Number of extensions: 104965
Number of successful extensions: 409
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 51
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)