Query 037432
Match_columns 111
No_of_seqs 167 out of 1043
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 12:11:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 100.0 6.3E-35 1.4E-39 177.5 11.7 98 11-111 2-99 (99)
2 PHA03050 glutaredoxin; Provisi 100.0 1.4E-33 3.1E-38 173.8 13.0 102 6-110 2-106 (108)
3 KOG1752 Glutaredoxin and relat 100.0 5.4E-33 1.2E-37 169.4 12.5 103 5-110 2-104 (104)
4 PRK10824 glutaredoxin-4; Provi 100.0 1.9E-32 4.2E-37 169.9 11.3 100 5-110 3-107 (115)
5 TIGR00365 monothiol glutaredox 100.0 2.1E-29 4.6E-34 152.7 10.5 91 7-103 2-97 (97)
6 cd03028 GRX_PICOT_like Glutare 99.9 2.8E-27 6.1E-32 141.6 10.1 85 10-100 1-90 (90)
7 PRK10638 glutaredoxin 3; Provi 99.9 3.4E-26 7.4E-31 134.9 10.2 82 17-104 2-83 (83)
8 PTZ00062 glutaredoxin; Provisi 99.9 1E-25 2.2E-30 152.2 11.5 95 5-105 101-200 (204)
9 TIGR02181 GRX_bact Glutaredoxi 99.9 1E-25 2.3E-30 131.5 8.9 79 19-103 1-79 (79)
10 TIGR02180 GRX_euk Glutaredoxin 99.9 3.6E-25 7.8E-30 130.0 9.9 82 19-103 1-84 (84)
11 cd03419 GRX_GRXh_1_2_like Glut 99.9 1.9E-24 4E-29 126.6 9.8 82 18-102 1-82 (82)
12 COG0278 Glutaredoxin-related p 99.9 5E-24 1.1E-28 127.0 10.0 98 4-107 2-105 (105)
13 COG0695 GrxC Glutaredoxin and 99.9 4.5E-24 9.8E-29 125.1 9.2 78 18-99 2-79 (80)
14 cd03031 GRX_GRX_like Glutaredo 99.9 8.8E-24 1.9E-28 136.3 10.6 86 18-106 1-93 (147)
15 cd03418 GRX_GRXb_1_3_like Glut 99.9 1.9E-23 4.1E-28 120.5 10.2 74 18-97 1-75 (75)
16 TIGR02190 GlrX-dom Glutaredoxi 99.9 2.4E-23 5.2E-28 121.7 9.1 75 13-94 4-78 (79)
17 cd03027 GRX_DEP Glutaredoxin ( 99.9 5.3E-23 1.2E-27 118.4 8.4 71 18-94 2-72 (73)
18 cd03029 GRX_hybridPRX5 Glutare 99.9 1.1E-22 2.3E-27 116.8 9.2 70 18-94 2-71 (72)
19 PRK12759 bifunctional gluaredo 99.9 3E-22 6.5E-27 147.6 10.2 88 17-109 2-94 (410)
20 TIGR02183 GRXA Glutaredoxin, G 99.9 1.8E-21 4E-26 115.5 8.9 75 19-97 2-81 (86)
21 PRK11200 grxA glutaredoxin 1; 99.9 3.1E-21 6.6E-26 114.1 9.0 75 18-96 2-81 (85)
22 cd02066 GRX_family Glutaredoxi 99.8 2.1E-20 4.6E-25 105.9 8.8 71 18-94 1-71 (72)
23 PF00462 Glutaredoxin: Glutare 99.8 1.3E-19 2.7E-24 100.6 7.6 60 19-84 1-60 (60)
24 KOG0911 Glutaredoxin-related p 99.8 7.9E-19 1.7E-23 118.5 9.5 93 8-106 130-227 (227)
25 cd03030 GRX_SH3BGR Glutaredoxi 99.8 1.1E-18 2.3E-23 104.6 9.1 83 19-104 2-91 (92)
26 TIGR02194 GlrX_NrdH Glutaredox 99.8 3.6E-18 7.8E-23 98.0 6.7 63 19-88 1-64 (72)
27 PRK10329 glutaredoxin-like pro 99.7 1E-17 2.2E-22 98.4 7.8 64 18-88 2-65 (81)
28 TIGR02196 GlrX_YruB Glutaredox 99.6 1.2E-15 2.5E-20 86.7 7.7 65 18-88 1-65 (74)
29 cd02976 NrdH NrdH-redoxin (Nrd 99.6 1E-14 2.2E-19 82.6 8.0 66 18-89 1-66 (73)
30 KOG2824 Glutaredoxin-related p 99.6 5.9E-15 1.3E-19 102.3 7.7 89 16-107 130-225 (281)
31 cd02973 TRX_GRX_like Thioredox 99.6 8E-15 1.7E-19 82.6 6.0 59 18-86 2-65 (67)
32 TIGR02200 GlrX_actino Glutared 99.5 7.3E-14 1.6E-18 80.2 8.9 65 18-88 1-67 (77)
33 PF04908 SH3BGR: SH3-binding, 99.4 1.6E-12 3.5E-17 78.6 8.8 84 18-104 2-97 (99)
34 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 1.8E-12 3.9E-17 77.3 6.8 70 6-85 3-77 (89)
35 cd03041 GST_N_2GST_N GST_N fam 99.3 2.5E-11 5.4E-16 70.2 8.4 71 19-95 2-74 (77)
36 cd00570 GST_N_family Glutathio 99.3 5E-11 1.1E-15 66.2 8.1 68 20-93 2-69 (71)
37 cd03037 GST_N_GRX2 GST_N famil 99.3 4.5E-11 9.8E-16 67.9 8.0 68 20-95 2-70 (71)
38 TIGR00411 redox_disulf_1 small 99.2 4.6E-11 9.9E-16 69.3 6.6 55 18-82 2-62 (82)
39 cd03040 GST_N_mPGES2 GST_N fam 99.2 1.2E-10 2.6E-15 67.0 8.3 69 18-95 1-73 (77)
40 cd03060 GST_N_Omega_like GST_N 99.2 2.8E-10 6.1E-15 64.7 8.5 67 20-93 2-69 (71)
41 TIGR01295 PedC_BrcD bacterioci 99.2 1.9E-10 4.2E-15 72.2 7.5 79 8-87 14-106 (122)
42 PHA02125 thioredoxin-like prot 99.1 1.7E-10 3.7E-15 66.5 5.8 55 19-84 2-56 (75)
43 cd03059 GST_N_SspA GST_N famil 99.1 9E-10 2E-14 62.5 8.6 70 19-95 1-70 (73)
44 cd02975 PfPDO_like_N Pyrococcu 99.1 4.3E-10 9.3E-15 69.6 7.2 57 13-79 19-81 (113)
45 cd03055 GST_N_Omega GST_N fami 99.1 2.3E-09 4.9E-14 63.6 8.7 71 16-93 16-87 (89)
46 cd03036 ArsC_like Arsenate Red 99.1 4.3E-10 9.3E-15 69.5 5.8 49 19-67 1-49 (111)
47 TIGR00412 redox_disulf_2 small 99.1 1E-09 2.2E-14 63.4 6.6 54 19-84 3-60 (76)
48 cd02977 ArsC_family Arsenate R 99.0 7.8E-10 1.7E-14 67.5 6.0 39 19-57 1-39 (105)
49 PF05768 DUF836: Glutaredoxin- 99.0 3.3E-09 7.1E-14 62.0 7.6 53 18-81 1-57 (81)
50 cd03051 GST_N_GTT2_like GST_N 99.0 2.1E-09 4.5E-14 60.9 6.7 71 19-93 1-72 (74)
51 PF13417 GST_N_3: Glutathione 99.0 3.4E-09 7.3E-14 60.9 7.5 68 21-95 1-68 (75)
52 cd03045 GST_N_Delta_Epsilon GS 99.0 7E-09 1.5E-13 59.0 8.4 72 19-94 1-72 (74)
53 PRK01655 spxA transcriptional 99.0 2.2E-09 4.8E-14 68.2 6.4 47 19-65 2-48 (131)
54 cd02989 Phd_like_TxnDC9 Phosdu 99.0 3.9E-09 8.5E-14 65.3 7.2 72 6-87 11-91 (113)
55 cd02954 DIM1 Dim1 family; Dim1 99.0 4.5E-09 9.8E-14 65.2 7.2 57 19-85 18-82 (114)
56 PHA02278 thioredoxin-like prot 98.9 9.2E-09 2E-13 62.8 8.2 72 7-84 4-85 (103)
57 TIGR02187 GlrX_arch Glutaredox 98.9 3.3E-09 7E-14 72.4 6.8 68 5-82 123-195 (215)
58 TIGR01617 arsC_related transcr 98.9 3.1E-09 6.8E-14 66.2 5.9 49 19-67 1-49 (117)
59 PRK15317 alkyl hydroperoxide r 98.9 4.5E-09 9.8E-14 79.8 7.2 73 3-85 104-181 (517)
60 cd03056 GST_N_4 GST_N family, 98.9 2.3E-08 5E-13 56.5 8.3 71 19-93 1-71 (73)
61 PRK13344 spxA transcriptional 98.9 7.1E-09 1.5E-13 66.0 6.4 48 19-66 2-49 (132)
62 TIGR03140 AhpF alkyl hydropero 98.9 7.1E-09 1.5E-13 78.8 7.2 74 3-86 105-183 (515)
63 cd03032 ArsC_Spx Arsenate Redu 98.9 9.5E-09 2.1E-13 63.8 6.5 48 19-66 2-49 (115)
64 PRK12559 transcriptional regul 98.9 9.2E-09 2E-13 65.4 6.3 47 19-65 2-48 (131)
65 cd03035 ArsC_Yffb Arsenate Red 98.9 9.2E-09 2E-13 63.0 6.0 49 19-67 1-49 (105)
66 TIGR03143 AhpF_homolog putativ 98.8 1.2E-08 2.5E-13 78.3 6.9 71 3-83 464-539 (555)
67 PRK09381 trxA thioredoxin; Pro 98.8 1.6E-08 3.4E-13 61.7 6.2 59 19-87 25-91 (109)
68 KOG0910 Thioredoxin-like prote 98.8 1E-08 2.2E-13 66.0 5.1 67 8-84 52-128 (150)
69 PTZ00051 thioredoxin; Provisio 98.8 3.9E-08 8.6E-13 58.7 6.9 73 5-87 6-87 (98)
70 PF13192 Thioredoxin_3: Thiore 98.8 1.5E-08 3.3E-13 58.4 4.7 54 18-83 2-59 (76)
71 cd03058 GST_N_Tau GST_N family 98.7 1.7E-07 3.6E-12 53.4 8.6 70 19-95 1-71 (74)
72 cd02953 DsbDgamma DsbD gamma f 98.7 5.1E-08 1.1E-12 59.0 6.5 64 9-78 3-77 (104)
73 cd03061 GST_N_CLIC GST_N famil 98.7 1.1E-07 2.3E-12 56.9 7.7 64 25-95 20-83 (91)
74 cd02957 Phd_like Phosducin (Ph 98.7 8.6E-08 1.9E-12 59.1 7.4 63 19-92 28-97 (113)
75 cd03033 ArsC_15kD Arsenate Red 98.7 5E-08 1.1E-12 60.5 6.3 42 18-59 1-43 (113)
76 COG3118 Thioredoxin domain-con 98.7 3.4E-08 7.4E-13 69.9 6.2 64 15-88 42-114 (304)
77 cd02985 TRX_CDSP32 TRX family, 98.7 1.3E-07 2.9E-12 57.4 8.0 60 19-85 19-85 (103)
78 cd02994 PDI_a_TMX PDIa family, 98.7 4.8E-08 1E-12 58.7 6.0 65 8-82 9-82 (101)
79 cd02948 TRX_NDPK TRX domain, T 98.7 7.9E-08 1.7E-12 58.2 7.0 68 6-84 6-84 (102)
80 cd02949 TRX_NTR TRX domain, no 98.7 8.7E-08 1.9E-12 57.4 7.1 58 19-86 17-82 (97)
81 cd03054 GST_N_Metaxin GST_N fa 98.7 1.6E-07 3.5E-12 53.3 7.7 57 25-95 14-70 (72)
82 cd03052 GST_N_GDAP1 GST_N fami 98.7 2.1E-07 4.4E-12 53.3 8.2 71 19-93 1-71 (73)
83 cd03053 GST_N_Phi GST_N family 98.7 2.2E-07 4.7E-12 53.1 8.3 73 19-95 2-74 (76)
84 cd02947 TRX_family TRX family; 98.7 1.1E-07 2.5E-12 54.9 7.2 56 19-84 14-76 (93)
85 PF00085 Thioredoxin: Thioredo 98.7 6.5E-08 1.4E-12 57.7 6.1 59 19-85 21-85 (103)
86 cd02986 DLP Dim1 family, Dim1- 98.7 1.3E-07 2.7E-12 58.6 7.0 59 16-84 14-81 (114)
87 cd03049 GST_N_3 GST_N family, 98.7 2.5E-07 5.4E-12 52.5 7.6 67 20-93 2-71 (73)
88 cd02965 HyaE HyaE family; HyaE 98.7 7.5E-08 1.6E-12 59.5 5.5 59 19-87 31-99 (111)
89 cd03003 PDI_a_ERdj5_N PDIa fam 98.6 1.2E-07 2.6E-12 57.1 5.9 65 9-83 10-84 (101)
90 cd02984 TRX_PICOT TRX domain, 98.6 2.2E-07 4.8E-12 55.2 6.7 58 19-84 18-81 (97)
91 TIGR02187 GlrX_arch Glutaredox 98.6 2.1E-07 4.5E-12 63.5 7.3 64 13-84 17-90 (215)
92 cd02996 PDI_a_ERp44 PDIa famil 98.6 1.9E-07 4.1E-12 56.9 6.0 64 9-82 10-89 (108)
93 cd02962 TMX2 TMX2 family; comp 98.6 2.7E-07 5.9E-12 60.0 6.9 59 19-87 51-124 (152)
94 TIGR01068 thioredoxin thioredo 98.6 5.7E-07 1.2E-11 53.3 7.8 56 19-84 18-81 (101)
95 cd02999 PDI_a_ERp44_like PDIa 98.6 4E-07 8.6E-12 55.1 6.9 53 19-78 22-77 (100)
96 cd02963 TRX_DnaJ TRX domain, D 98.6 4.1E-07 8.9E-12 55.9 7.0 56 19-84 28-92 (111)
97 cd02987 Phd_like_Phd Phosducin 98.6 3.6E-07 7.8E-12 60.7 7.0 78 19-107 87-175 (175)
98 KOG0907 Thioredoxin [Posttrans 98.5 7.6E-07 1.6E-11 54.6 7.8 60 19-88 25-95 (106)
99 cd03076 GST_N_Pi GST_N family, 98.5 1.5E-06 3.3E-11 49.5 8.6 70 18-94 1-70 (73)
100 cd03004 PDI_a_ERdj5_C PDIa fam 98.5 3.2E-07 6.9E-12 55.4 5.9 53 19-81 23-83 (104)
101 cd03042 GST_N_Zeta GST_N famil 98.5 7.9E-07 1.7E-11 50.2 7.0 70 20-93 2-71 (73)
102 PRK10996 thioredoxin 2; Provis 98.5 6.3E-07 1.4E-11 57.3 7.2 69 8-84 43-119 (139)
103 cd03006 PDI_a_EFP1_N PDIa fami 98.5 5.2E-07 1.1E-11 55.9 6.6 59 14-82 26-95 (113)
104 COG1393 ArsC Arsenate reductas 98.5 4.9E-07 1.1E-11 56.4 6.4 50 18-67 2-51 (117)
105 cd02950 TxlA TRX-like protein 98.5 9E-07 1.9E-11 56.8 7.7 67 10-84 13-90 (142)
106 PLN00410 U5 snRNP protein, DIM 98.5 5.9E-07 1.3E-11 57.8 6.7 69 4-82 8-89 (142)
107 cd02959 ERp19 Endoplasmic reti 98.5 1E-06 2.2E-11 54.9 7.4 73 6-85 8-91 (117)
108 TIGR00014 arsC arsenate reduct 98.5 5.2E-07 1.1E-11 56.0 5.9 49 19-67 1-49 (114)
109 cd03034 ArsC_ArsC Arsenate Red 98.5 5.5E-07 1.2E-11 55.7 6.0 49 19-67 1-49 (112)
110 cd02956 ybbN ybbN protein fami 98.5 8.6E-07 1.9E-11 52.7 6.6 58 19-84 16-79 (96)
111 PRK10026 arsenate reductase; P 98.5 7.2E-07 1.6E-11 57.3 6.5 50 17-67 2-52 (141)
112 cd02952 TRP14_like Human TRX-r 98.5 3.4E-07 7.4E-12 57.3 4.9 70 6-78 8-95 (119)
113 KOG3029 Glutathione S-transfer 98.5 9.8E-07 2.1E-11 62.3 7.5 68 18-94 90-157 (370)
114 TIGR02182 GRXB Glutaredoxin, G 98.5 1.1E-06 2.3E-11 59.7 7.5 69 20-96 1-70 (209)
115 cd03002 PDI_a_MPD1_like PDI fa 98.5 8.7E-07 1.9E-11 53.7 6.4 52 19-78 22-79 (109)
116 PF13409 GST_N_2: Glutathione 98.5 3.8E-07 8.2E-12 51.7 4.5 67 26-95 1-68 (70)
117 cd03000 PDI_a_TMX3 PDIa family 98.5 4.3E-07 9.4E-12 55.0 5.0 64 8-81 7-81 (104)
118 cd02951 SoxW SoxW family; SoxW 98.4 1.3E-06 2.9E-11 54.4 7.1 71 8-81 4-93 (125)
119 KOG4023 Uncharacterized conser 98.4 3.8E-07 8.2E-12 54.6 4.2 86 17-105 2-98 (108)
120 TIGR01616 nitro_assoc nitrogen 98.4 1E-06 2.3E-11 55.6 6.4 45 18-62 2-47 (126)
121 PRK10853 putative reductase; P 98.4 8.5E-07 1.8E-11 55.4 6.0 41 19-59 2-43 (118)
122 cd03080 GST_N_Metaxin_like GST 98.4 2.6E-06 5.7E-11 48.7 7.6 63 19-95 2-71 (75)
123 cd03038 GST_N_etherase_LigE GS 98.4 1.1E-06 2.3E-11 51.3 5.9 66 25-95 14-80 (84)
124 cd03048 GST_N_Ure2p_like GST_N 98.4 4.9E-06 1.1E-10 48.0 8.5 72 19-95 2-76 (81)
125 PRK09481 sspA stringent starva 98.4 3.8E-06 8.3E-11 56.9 9.0 71 17-94 9-79 (211)
126 cd03039 GST_N_Sigma_like GST_N 98.4 3E-06 6.4E-11 47.9 7.2 69 20-94 2-70 (72)
127 cd01659 TRX_superfamily Thiore 98.4 1.2E-06 2.6E-11 46.6 5.3 56 19-81 1-61 (69)
128 cd03001 PDI_a_P5 PDIa family, 98.4 1.6E-06 3.4E-11 51.9 6.2 50 19-78 22-77 (103)
129 PF13098 Thioredoxin_2: Thiore 98.4 1.9E-06 4.1E-11 52.5 6.7 69 18-89 8-104 (112)
130 cd02993 PDI_a_APS_reductase PD 98.4 2.6E-06 5.5E-11 52.1 7.1 52 19-78 25-83 (109)
131 cd02961 PDI_a_family Protein D 98.4 1.6E-06 3.5E-11 51.0 6.0 62 9-78 7-76 (101)
132 cd03005 PDI_a_ERp46 PDIa famil 98.4 1.4E-06 3E-11 52.1 5.7 68 9-84 9-86 (102)
133 cd03044 GST_N_EF1Bgamma GST_N 98.4 3.6E-06 7.9E-11 48.0 7.1 70 20-94 2-72 (75)
134 PRK10387 glutaredoxin 2; Provi 98.4 2.9E-06 6.3E-11 57.0 7.7 70 19-96 1-71 (210)
135 TIGR01126 pdi_dom protein disu 98.4 1.3E-06 2.7E-11 52.1 5.3 50 19-78 17-74 (102)
136 TIGR02740 TraF-like TraF-like 98.3 5.8E-06 1.3E-10 58.4 9.2 69 8-79 159-235 (271)
137 cd02997 PDI_a_PDIR PDIa family 98.3 2.2E-06 4.8E-11 51.3 6.0 68 9-84 9-88 (104)
138 cd03065 PDI_b_Calsequestrin_N 98.3 2.8E-06 6.2E-11 53.2 6.6 68 8-85 17-101 (120)
139 cd03050 GST_N_Theta GST_N fami 98.3 8.7E-06 1.9E-10 46.4 7.9 73 19-95 1-73 (76)
140 PRK10877 protein disulfide iso 98.3 4.2E-06 9.2E-11 57.9 7.5 68 19-89 111-219 (232)
141 cd02955 SSP411 TRX domain, SSP 98.3 7.4E-06 1.6E-10 51.6 7.5 76 8-86 6-96 (124)
142 PF13728 TraF: F plasmid trans 98.2 4.8E-06 1E-10 57.0 6.8 70 6-79 111-189 (215)
143 cd02998 PDI_a_ERp38 PDIa famil 98.2 3.9E-06 8.5E-11 50.2 5.3 54 19-79 22-81 (105)
144 cd03047 GST_N_2 GST_N family, 98.2 2E-05 4.4E-10 44.6 7.7 70 20-93 2-71 (73)
145 cd02988 Phd_like_VIAF Phosduci 98.2 8.4E-06 1.8E-10 54.9 6.6 67 6-85 89-166 (192)
146 PTZ00443 Thioredoxin domain-co 98.2 5.2E-06 1.1E-10 57.2 5.7 56 19-84 56-119 (224)
147 COG4545 Glutaredoxin-related p 98.1 1.1E-05 2.4E-10 46.1 5.8 68 20-91 5-82 (85)
148 KOG0406 Glutathione S-transfer 98.1 3.2E-05 6.8E-10 53.4 8.6 74 17-96 8-81 (231)
149 cd03057 GST_N_Beta GST_N famil 98.1 2.7E-05 5.8E-10 44.4 7.1 71 20-95 2-73 (77)
150 PF14595 Thioredoxin_9: Thiore 98.1 1E-06 2.2E-11 55.8 1.0 69 4-79 30-103 (129)
151 PF03960 ArsC: ArsC family; I 98.1 1.3E-05 2.9E-10 49.2 5.6 46 22-67 1-46 (110)
152 TIGR00862 O-ClC intracellular 98.1 3.4E-05 7.3E-10 53.6 7.9 64 25-95 17-80 (236)
153 cd03020 DsbA_DsbC_DsbG DsbA fa 98.1 2.2E-05 4.8E-10 52.7 6.8 71 17-90 79-190 (197)
154 PTZ00062 glutaredoxin; Provisi 98.0 2.6E-05 5.7E-10 53.0 7.0 66 6-87 5-78 (204)
155 cd02992 PDI_a_QSOX PDIa family 98.0 2.3E-05 5.1E-10 48.4 6.2 64 9-78 10-83 (114)
156 cd03043 GST_N_1 GST_N family, 98.0 6.5E-05 1.4E-09 42.7 7.6 65 24-93 7-71 (73)
157 PRK15113 glutathione S-transfe 98.0 5.4E-05 1.2E-09 51.3 8.4 74 17-94 4-79 (214)
158 TIGR02739 TraF type-F conjugat 98.0 5.2E-05 1.1E-09 53.2 7.4 71 5-79 140-219 (256)
159 cd03046 GST_N_GTT1_like GST_N 97.9 0.00018 3.9E-09 40.6 8.1 69 20-95 2-72 (76)
160 PLN02378 glutathione S-transfe 97.9 8.4E-05 1.8E-09 50.5 7.8 64 25-95 18-81 (213)
161 PRK13728 conjugal transfer pro 97.9 5.7E-05 1.2E-09 50.5 6.7 61 18-79 72-142 (181)
162 cd02995 PDI_a_PDI_a'_C PDIa fa 97.9 8.3E-05 1.8E-09 44.3 6.6 49 19-78 22-78 (104)
163 TIGR02738 TrbB type-F conjugat 97.9 7.9E-05 1.7E-09 48.5 6.7 38 15-52 50-91 (153)
164 PLN02817 glutathione dehydroge 97.9 0.00011 2.3E-09 51.9 7.9 64 25-95 71-134 (265)
165 PRK13703 conjugal pilus assemb 97.8 8.4E-05 1.8E-09 52.0 6.8 70 6-79 134-212 (248)
166 TIGR00424 APS_reduc 5'-adenyly 97.8 8.9E-05 1.9E-09 56.1 7.5 56 19-82 375-439 (463)
167 PLN02473 glutathione S-transfe 97.8 0.00021 4.6E-09 48.2 8.6 70 19-94 3-74 (214)
168 TIGR01262 maiA maleylacetoacet 97.8 7E-05 1.5E-09 50.3 5.9 72 21-95 2-73 (210)
169 COG2999 GrxB Glutaredoxin 2 [P 97.8 4.5E-05 9.7E-10 50.7 4.7 68 20-95 2-70 (215)
170 TIGR01130 ER_PDI_fam protein d 97.8 5.9E-05 1.3E-09 56.0 5.9 66 8-83 9-87 (462)
171 PTZ00102 disulphide isomerase; 97.8 5.9E-05 1.3E-09 56.6 5.9 68 8-83 40-118 (477)
172 PF13899 Thioredoxin_7: Thiore 97.8 8.2E-05 1.8E-09 43.1 4.8 50 6-55 6-64 (82)
173 PLN02309 5'-adenylylsulfate re 97.7 0.00013 2.9E-09 55.1 6.8 54 19-81 369-432 (457)
174 PF06764 DUF1223: Protein of u 97.7 9.4E-05 2E-09 50.3 5.2 69 19-88 2-86 (202)
175 cd03009 TryX_like_TryX_NRX Try 97.7 0.0002 4.3E-09 44.8 6.3 63 19-84 22-113 (131)
176 cd02982 PDI_b'_family Protein 97.7 7.2E-05 1.6E-09 44.7 4.0 52 18-79 15-74 (103)
177 cd03007 PDI_a_ERp29_N PDIa fam 97.7 0.00073 1.6E-08 42.1 8.5 70 8-82 9-91 (116)
178 PRK15412 thiol:disulfide inter 97.6 0.00071 1.5E-08 45.1 8.7 33 19-51 72-107 (185)
179 cd03023 DsbA_Com1_like DsbA fa 97.6 0.00061 1.3E-08 43.1 7.8 22 72-93 128-149 (154)
180 cd02964 TryX_like_family Trypa 97.6 0.00037 8.1E-09 43.8 6.7 63 19-84 21-113 (132)
181 PRK00293 dipZ thiol:disulfide 97.6 0.0005 1.1E-08 53.3 8.4 59 19-83 478-547 (571)
182 COG0625 Gst Glutathione S-tran 97.6 0.0003 6.6E-09 47.4 6.3 72 20-96 2-74 (211)
183 cd03010 TlpA_like_DsbE TlpA-li 97.6 0.0004 8.8E-09 43.1 6.4 22 19-40 29-50 (127)
184 KOG0190 Protein disulfide isom 97.6 0.00019 4.1E-09 54.5 5.5 69 7-83 32-111 (493)
185 PF07315 DUF1462: Protein of u 97.5 0.00073 1.6E-08 39.9 6.7 66 20-87 1-81 (93)
186 cd02972 DsbA_family DsbA famil 97.5 0.00051 1.1E-08 39.8 6.1 60 19-81 1-91 (98)
187 PF06110 DUF953: Eukaryotic pr 97.5 9.5E-05 2E-09 46.3 2.9 52 25-79 36-95 (119)
188 PRK10357 putative glutathione 97.5 0.00056 1.2E-08 45.7 6.9 68 20-94 2-70 (202)
189 PF13462 Thioredoxin_4: Thiore 97.5 0.00075 1.6E-08 43.3 7.1 21 72-92 135-155 (162)
190 cd03077 GST_N_Alpha GST_N fami 97.5 0.0018 3.9E-08 37.2 7.7 69 19-94 2-72 (79)
191 TIGR00385 dsbE periplasmic pro 97.5 0.00056 1.2E-08 45.0 6.2 31 19-49 67-100 (173)
192 PF13905 Thioredoxin_8: Thiore 97.4 0.0015 3.3E-08 38.4 7.4 39 19-57 5-49 (95)
193 cd03008 TryX_like_RdCVF Trypar 97.4 0.00062 1.3E-08 44.1 6.0 25 15-39 24-49 (146)
194 PTZ00102 disulphide isomerase; 97.4 0.00029 6.2E-09 52.9 4.7 50 19-78 379-436 (477)
195 KOG0908 Thioredoxin-like prote 97.4 0.00041 8.9E-09 48.5 4.9 56 19-84 25-87 (288)
196 KOG1422 Intracellular Cl- chan 97.3 0.0015 3.3E-08 44.5 7.2 63 26-95 20-82 (221)
197 TIGR02661 MauD methylamine deh 97.3 0.0017 3.7E-08 43.4 7.5 30 19-48 78-111 (189)
198 KOG4277 Uncharacterized conser 97.3 0.00039 8.5E-09 50.0 4.2 70 19-93 47-127 (468)
199 PLN02395 glutathione S-transfe 97.3 0.0019 4.2E-08 43.5 7.5 71 19-95 3-74 (215)
200 COG2143 Thioredoxin-related pr 97.3 0.0012 2.6E-08 43.1 5.9 72 8-82 33-125 (182)
201 PRK11657 dsbG disulfide isomer 97.3 0.0021 4.5E-08 45.1 7.4 30 19-48 121-154 (251)
202 cd02966 TlpA_like_family TlpA- 97.2 0.0013 2.8E-08 39.0 5.4 23 18-40 22-44 (116)
203 cd03011 TlpA_like_ScsD_MtbDsbE 97.2 0.00079 1.7E-08 41.4 4.4 23 18-40 23-45 (123)
204 PRK13972 GSH-dependent disulfi 97.2 0.005 1.1E-07 41.6 8.6 71 19-94 2-79 (215)
205 COG5494 Predicted thioredoxin/ 97.2 0.0025 5.5E-08 43.6 6.8 58 17-84 11-70 (265)
206 cd02958 UAS UAS family; UAS is 97.1 0.0062 1.3E-07 37.3 8.1 72 6-84 6-91 (114)
207 cd02967 mauD Methylamine utili 97.1 0.0024 5.2E-08 38.7 6.2 22 19-40 25-46 (114)
208 cd03078 GST_N_Metaxin1_like GS 97.1 0.0041 8.8E-08 35.4 6.7 57 25-95 14-70 (73)
209 cd03019 DsbA_DsbA DsbA family, 97.1 0.0031 6.7E-08 41.1 6.9 24 16-39 16-39 (178)
210 PRK03147 thiol-disulfide oxido 97.1 0.0036 7.9E-08 40.7 7.0 61 19-84 65-152 (173)
211 COG3019 Predicted metal-bindin 97.1 0.012 2.5E-07 37.8 8.8 75 16-97 25-103 (149)
212 smart00594 UAS UAS domain. 97.1 0.0034 7.3E-08 39.1 6.5 65 6-78 16-91 (122)
213 KOG3425 Uncharacterized conser 97.0 0.0024 5.1E-08 39.9 5.2 30 25-54 43-78 (128)
214 PRK11752 putative S-transferas 97.0 0.006 1.3E-07 42.9 7.7 75 15-95 41-126 (264)
215 cd03079 GST_N_Metaxin2 GST_N f 97.0 0.01 2.2E-07 34.0 7.3 58 25-95 15-72 (74)
216 cd02960 AGR Anterior Gradient 96.9 0.0018 3.9E-08 41.1 4.2 32 6-37 12-45 (130)
217 KOG2501 Thioredoxin, nucleored 96.9 0.0018 3.9E-08 42.3 4.1 46 13-58 30-83 (157)
218 PF11009 DUF2847: Protein of u 96.8 0.01 2.2E-07 36.3 6.9 81 1-86 1-93 (105)
219 COG4837 Uncharacterized protei 96.8 0.005 1.1E-07 36.8 5.1 70 15-86 3-87 (106)
220 KOG0868 Glutathione S-transfer 96.8 0.0054 1.2E-07 41.0 5.7 75 18-97 5-81 (217)
221 KOG0912 Thiol-disulfide isomer 96.8 0.0019 4.1E-08 46.5 3.8 67 9-83 5-84 (375)
222 PRK14018 trifunctional thiored 96.7 0.0046 9.9E-08 47.6 5.8 22 19-40 60-81 (521)
223 cd03075 GST_N_Mu GST_N family, 96.7 0.03 6.5E-07 32.3 8.0 71 21-94 3-78 (82)
224 PRK10954 periplasmic protein d 96.6 0.011 2.4E-07 40.0 6.6 21 16-36 38-58 (207)
225 PRK10542 glutathionine S-trans 96.5 0.013 2.8E-07 39.0 6.1 71 20-94 2-73 (201)
226 KOG4244 Failed axon connection 96.5 0.012 2.7E-07 41.5 6.0 65 15-93 42-113 (281)
227 PF08534 Redoxin: Redoxin; In 96.4 0.0081 1.8E-07 38.0 4.7 36 19-54 32-75 (146)
228 PTZ00057 glutathione s-transfe 96.3 0.046 9.9E-07 36.7 8.2 73 18-94 4-79 (205)
229 TIGR01130 ER_PDI_fam protein d 96.3 0.0065 1.4E-07 45.2 4.3 49 19-79 368-425 (462)
230 cd03012 TlpA_like_DipZ_like Tl 96.1 0.048 1E-06 33.8 6.8 22 19-40 27-48 (126)
231 TIGR01626 ytfJ_HI0045 conserve 96.0 0.036 7.7E-07 37.2 6.3 35 18-52 62-105 (184)
232 PF06953 ArsD: Arsenical resis 96.0 0.046 1E-06 34.4 6.4 58 32-93 31-94 (123)
233 COG5429 Uncharacterized secret 96.0 0.0094 2E-07 41.4 3.5 63 19-82 45-122 (261)
234 KOG0190 Protein disulfide isom 95.9 0.0095 2.1E-07 45.5 3.7 26 19-44 388-413 (493)
235 cd00340 GSH_Peroxidase Glutath 95.9 0.035 7.5E-07 35.6 5.8 20 19-39 26-45 (152)
236 COG0526 TrxA Thiol-disulfide i 95.9 0.02 4.2E-07 33.4 4.4 19 22-40 39-57 (127)
237 PLN02412 probable glutathione 95.9 0.063 1.4E-06 35.2 7.1 56 19-78 33-100 (167)
238 KOG0867 Glutathione S-transfer 95.8 0.057 1.2E-06 37.2 6.9 74 18-95 2-75 (226)
239 TIGR03143 AhpF_homolog putativ 95.8 0.033 7.1E-07 43.2 6.3 67 3-79 350-425 (555)
240 PF02114 Phosducin: Phosducin; 95.8 0.034 7.5E-07 39.4 5.7 80 19-109 150-240 (265)
241 PHA03075 glutaredoxin-like pro 95.8 0.016 3.4E-07 36.0 3.4 31 18-48 4-34 (123)
242 cd02969 PRX_like1 Peroxiredoxi 95.7 0.063 1.4E-06 35.0 6.5 21 19-39 29-49 (171)
243 PLN02919 haloacid dehalogenase 95.7 0.047 1E-06 45.5 7.0 22 19-40 424-445 (1057)
244 PTZ00056 glutathione peroxidas 95.6 0.05 1.1E-06 36.8 5.8 21 19-39 43-63 (199)
245 PTZ00256 glutathione peroxidas 95.6 0.051 1.1E-06 36.1 5.7 19 20-38 46-64 (183)
246 PF03190 Thioredox_DsbH: Prote 95.5 0.091 2E-06 34.6 6.6 73 9-84 29-116 (163)
247 PF00578 AhpC-TSA: AhpC/TSA fa 95.4 0.034 7.5E-07 33.8 4.3 21 19-39 29-50 (124)
248 COG3634 AhpF Alkyl hydroperoxi 95.4 0.038 8.2E-07 41.0 5.0 76 4-87 105-183 (520)
249 cd02970 PRX_like2 Peroxiredoxi 95.4 0.049 1.1E-06 34.2 4.9 21 19-39 27-48 (149)
250 cd02968 SCO SCO (an acronym fo 95.3 0.098 2.1E-06 32.7 6.2 20 19-38 26-46 (142)
251 KOG0191 Thioredoxin/protein di 95.3 0.025 5.3E-07 41.8 3.9 58 16-81 48-111 (383)
252 COG4232 Thiol:disulfide interc 95.2 0.022 4.8E-07 44.2 3.4 89 9-106 464-567 (569)
253 PF02798 GST_N: Glutathione S- 95.2 0.27 5.8E-06 27.8 7.6 69 19-93 3-73 (76)
254 KOG0913 Thiol-disulfide isomer 95.2 0.0034 7.3E-08 43.5 -1.0 66 8-83 32-106 (248)
255 PF10568 Tom37: Outer mitochon 95.1 0.12 2.5E-06 29.4 5.4 55 26-94 13-71 (72)
256 PLN02399 phospholipid hydroper 95.0 0.13 2.8E-06 35.9 6.5 32 19-50 103-141 (236)
257 TIGR02540 gpx7 putative glutat 94.9 0.12 2.6E-06 33.1 5.8 20 19-38 26-45 (153)
258 cd02971 PRX_family Peroxiredox 94.5 0.14 3E-06 31.8 5.2 20 19-38 26-46 (140)
259 cd03018 PRX_AhpE_like Peroxire 94.5 0.12 2.5E-06 32.7 4.8 20 19-38 32-52 (149)
260 TIGR03137 AhpC peroxiredoxin. 94.3 0.18 3.9E-06 33.6 5.7 36 16-51 31-75 (187)
261 cd03017 PRX_BCP Peroxiredoxin 94.1 0.25 5.4E-06 30.7 5.8 19 19-37 27-46 (140)
262 cd03014 PRX_Atyp2cys Peroxired 94.1 0.15 3.4E-06 32.0 4.8 23 17-39 27-51 (143)
263 PRK11509 hydrogenase-1 operon 94.1 0.15 3.2E-06 32.5 4.7 52 26-87 47-107 (132)
264 PRK13190 putative peroxiredoxi 94.0 0.17 3.6E-06 34.2 5.1 34 18-51 29-71 (202)
265 PF04134 DUF393: Protein of un 93.9 0.21 4.6E-06 30.3 5.0 71 21-96 1-76 (114)
266 KOG3414 Component of the U4/U6 93.9 0.34 7.4E-06 30.7 5.8 71 4-84 8-90 (142)
267 KOG1695 Glutathione S-transfer 93.8 0.57 1.2E-05 32.1 7.3 70 18-94 3-72 (206)
268 cd03015 PRX_Typ2cys Peroxiredo 93.5 0.34 7.3E-06 31.7 5.8 34 17-50 30-72 (173)
269 KOG1672 ATP binding protein [P 93.4 0.27 5.9E-06 33.4 5.2 93 7-109 75-180 (211)
270 cd03016 PRX_1cys Peroxiredoxin 93.3 0.26 5.6E-06 33.3 5.1 35 17-51 26-69 (203)
271 PRK13599 putative peroxiredoxi 93.1 0.29 6.4E-06 33.5 5.1 37 16-52 28-73 (215)
272 KOG0914 Thioredoxin-like prote 93.0 0.19 4.1E-06 34.9 3.9 62 19-84 148-218 (265)
273 KOG3171 Conserved phosducin-li 92.8 0.52 1.1E-05 32.7 5.9 81 20-109 164-253 (273)
274 KOG0191 Thioredoxin/protein di 92.7 0.24 5.2E-06 36.6 4.5 54 16-77 163-222 (383)
275 cd05295 MDH_like Malate dehydr 92.1 0.6 1.3E-05 35.6 6.1 71 24-95 1-82 (452)
276 KOG1731 FAD-dependent sulfhydr 92.1 0.05 1.1E-06 42.3 0.3 66 18-86 60-138 (606)
277 PRK13189 peroxiredoxin; Provis 91.9 0.53 1.1E-05 32.4 5.2 36 17-52 36-80 (222)
278 PRK15000 peroxidase; Provision 91.9 1 2.2E-05 30.5 6.5 36 15-50 33-77 (200)
279 PRK09437 bcp thioredoxin-depen 91.7 0.74 1.6E-05 29.3 5.5 19 15-33 29-49 (154)
280 PRK00522 tpx lipid hydroperoxi 91.4 0.52 1.1E-05 30.7 4.6 21 19-39 48-69 (167)
281 TIGR03759 conj_TIGR03759 integ 91.4 1.3 2.8E-05 30.2 6.4 44 16-59 109-152 (200)
282 KOG4420 Uncharacterized conser 91.3 0.18 3.9E-06 35.8 2.4 73 19-96 27-100 (325)
283 PRK13191 putative peroxiredoxi 91.0 0.75 1.6E-05 31.5 5.2 39 16-54 33-80 (215)
284 PRK10382 alkyl hydroperoxide r 90.9 0.76 1.7E-05 30.8 5.0 18 17-34 32-51 (187)
285 PRK10606 btuE putative glutath 89.3 2.5 5.5E-05 28.2 6.5 14 19-32 29-42 (183)
286 COG2761 FrnE Predicted dithiol 89.0 0.81 1.8E-05 31.7 4.0 50 18-67 7-68 (225)
287 PTZ00137 2-Cys peroxiredoxin; 88.9 2.7 6E-05 29.8 6.7 37 15-51 97-142 (261)
288 PF11287 DUF3088: Protein of u 88.6 1.3 2.8E-05 27.4 4.3 49 26-81 23-76 (112)
289 cd03022 DsbA_HCCA_Iso DsbA fam 88.1 0.98 2.1E-05 29.6 3.9 27 64-93 161-187 (192)
290 PF09822 ABC_transp_aux: ABC-t 87.7 2 4.3E-05 30.1 5.5 63 3-68 13-86 (271)
291 cd03013 PRX5_like Peroxiredoxi 86.6 3.4 7.3E-05 26.6 5.7 19 15-33 28-48 (155)
292 PF02966 DIM1: Mitosis protein 86.0 3.3 7.2E-05 26.4 5.2 71 6-84 7-87 (133)
293 PF01323 DSBA: DSBA-like thior 85.8 0.93 2E-05 29.6 2.8 32 18-49 1-37 (193)
294 cd02991 UAS_ETEA UAS family, E 85.5 5.1 0.00011 24.7 5.9 62 7-79 7-83 (116)
295 PF04566 RNA_pol_Rpb2_4: RNA p 84.8 2.1 4.5E-05 23.7 3.5 18 77-94 1-18 (63)
296 PRK00994 F420-dependent methyl 84.7 6.5 0.00014 27.8 6.5 101 1-111 43-152 (277)
297 COG3011 Predicted thiol-disulf 84.5 8.4 0.00018 24.7 8.0 73 16-93 7-82 (137)
298 PF01323 DSBA: DSBA-like thior 83.6 1.8 4E-05 28.2 3.5 58 33-93 126-188 (193)
299 PTZ00253 tryparedoxin peroxida 83.6 4.9 0.00011 26.9 5.6 35 18-52 38-81 (199)
300 PF10865 DUF2703: Domain of un 83.2 4.2 9.1E-05 25.5 4.8 48 26-84 14-72 (120)
301 COG1651 DsbG Protein-disulfide 83.1 4.6 0.0001 27.7 5.5 24 16-39 85-108 (244)
302 cd02974 AhpF_NTD_N Alkyl hydro 82.5 4.1 9E-05 24.2 4.4 39 1-40 1-43 (94)
303 COG0041 PurE Phosphoribosylcar 82.4 12 0.00025 24.7 6.7 75 20-94 8-103 (162)
304 COG3340 PepE Peptidase E [Amin 82.3 7.4 0.00016 27.0 6.0 73 25-110 46-121 (224)
305 PF12689 Acid_PPase: Acid Phos 81.5 13 0.00028 24.6 7.1 74 5-83 49-134 (169)
306 cd03021 DsbA_GSTK DsbA family, 81.4 3.3 7.1E-05 27.9 4.2 32 18-49 2-39 (209)
307 cd03024 DsbA_FrnE DsbA family, 80.1 6.5 0.00014 25.9 5.2 25 64-91 169-194 (201)
308 PF03227 GILT: Gamma interfero 79.4 1.7 3.7E-05 26.4 2.1 15 18-32 2-16 (108)
309 TIGR01689 EcbF-BcbF capsule bi 78.7 9.8 0.00021 23.9 5.3 47 5-51 28-87 (126)
310 COG1651 DsbG Protein-disulfide 76.9 4.1 8.8E-05 27.9 3.6 28 62-92 207-234 (244)
311 cd03025 DsbA_FrnE_like DsbA fa 76.8 1.6 3.4E-05 28.6 1.4 21 18-38 2-22 (193)
312 PF06053 DUF929: Domain of unk 76.2 7.2 0.00016 27.5 4.6 23 20-42 63-89 (249)
313 PF14437 MafB19-deam: MafB19-l 73.3 12 0.00026 24.3 4.7 30 16-45 99-130 (146)
314 PF03575 Peptidase_S51: Peptid 73.0 11 0.00024 24.1 4.7 63 30-105 2-64 (154)
315 TIGR02654 circ_KaiB circadian 73.0 7.3 0.00016 23.0 3.4 64 19-92 6-81 (87)
316 COG1331 Highly conserved prote 72.9 22 0.00048 28.7 7.0 66 8-76 34-111 (667)
317 TIGR01162 purE phosphoribosyla 72.4 20 0.00043 23.5 5.7 75 21-95 5-100 (156)
318 PRK15317 alkyl hydroperoxide r 72.1 7.1 0.00015 30.0 4.2 40 1-40 1-43 (517)
319 PF07511 DUF1525: Protein of u 71.9 17 0.00037 22.6 5.0 24 67-93 80-104 (114)
320 cd06387 PBP1_iGluR_AMPA_GluR3 71.7 28 0.0006 25.8 7.0 87 4-93 50-146 (372)
321 cd06381 PBP1_iGluR_delta_like 71.7 37 0.00081 24.9 8.8 43 3-45 48-90 (363)
322 KOG2603 Oligosaccharyltransfer 71.4 8.1 0.00017 28.3 4.0 52 19-80 64-133 (331)
323 PRK09301 circadian clock prote 71.4 8 0.00017 23.6 3.4 65 19-93 9-85 (103)
324 PF15643 Tox-PL-2: Papain fold 71.2 13 0.00027 22.6 4.2 26 26-51 20-46 (100)
325 cd03022 DsbA_HCCA_Iso DsbA fam 70.1 4.9 0.00011 26.2 2.6 27 19-45 1-31 (192)
326 TIGR03757 conj_TIGR03757 integ 69.0 11 0.00025 23.3 3.8 25 66-93 80-105 (113)
327 TIGR03521 GldG gliding-associa 68.4 29 0.00063 27.2 6.8 53 3-55 36-98 (552)
328 PLN02590 probable tyrosine dec 68.1 56 0.0012 25.7 8.2 80 17-107 228-317 (539)
329 PF00731 AIRC: AIR carboxylase 67.7 16 0.00035 23.8 4.5 42 24-65 10-51 (150)
330 TIGR03190 benz_CoA_bzdN benzoy 67.5 35 0.00076 25.3 6.8 35 19-53 317-355 (377)
331 TIGR03140 AhpF alkyl hydropero 66.8 11 0.00023 29.1 4.1 40 1-40 1-43 (515)
332 cd06388 PBP1_iGluR_AMPA_GluR4 65.9 51 0.0011 24.3 7.7 87 4-94 50-147 (371)
333 PF07449 HyaE: Hydrogenase-1 e 65.3 11 0.00023 23.2 3.1 68 17-92 27-103 (107)
334 COG1927 Mtd Coenzyme F420-depe 64.1 47 0.001 23.2 6.4 95 6-110 48-151 (277)
335 COG0602 NrdG Organic radical a 64.1 2.5 5.4E-05 28.9 0.2 82 19-110 23-111 (212)
336 cd02978 KaiB_like KaiB-like fa 63.3 11 0.00024 21.4 2.8 49 19-77 4-59 (72)
337 PRK00766 hypothetical protein; 63.3 18 0.00038 24.6 4.2 51 41-94 42-94 (194)
338 PF00004 AAA: ATPase family as 61.9 24 0.00051 21.1 4.4 60 19-81 1-66 (132)
339 COG1225 Bcp Peroxiredoxin [Pos 61.3 36 0.00079 22.3 5.3 15 17-31 31-47 (157)
340 KOG3028 Translocase of outer m 59.9 66 0.0014 23.6 6.7 65 18-96 3-73 (313)
341 PRK10670 hypothetical protein; 59.9 19 0.00041 23.4 3.8 48 32-79 3-50 (159)
342 cd03024 DsbA_FrnE DsbA family, 59.8 5.4 0.00012 26.2 1.3 19 19-37 1-19 (201)
343 KOG4498 Uncharacterized conser 58.7 16 0.00035 24.8 3.3 35 10-44 44-87 (197)
344 PF00282 Pyridoxal_deC: Pyrido 58.1 42 0.00092 24.9 5.8 73 16-93 139-216 (373)
345 PF13743 Thioredoxin_5: Thiore 57.9 12 0.00026 24.6 2.7 29 21-49 2-36 (176)
346 cd04336 YeaK YeaK is an unchar 57.7 44 0.00095 21.1 5.2 45 31-79 2-46 (153)
347 COG4107 PhnK ABC-type phosphon 57.7 25 0.00055 24.1 4.1 60 32-94 130-189 (258)
348 PF00763 THF_DHG_CYH: Tetrahyd 57.6 42 0.00091 20.6 7.5 71 6-79 16-93 (117)
349 TIGR03865 PQQ_CXXCW PQQ-depend 57.1 20 0.00042 23.4 3.5 29 15-43 115-143 (162)
350 PF10087 DUF2325: Uncharacteri 56.2 39 0.00085 19.8 5.0 41 8-48 40-82 (97)
351 cd06389 PBP1_iGluR_AMPA_GluR2 55.6 76 0.0017 23.3 6.8 87 4-93 44-140 (370)
352 PF15616 TerY-C: TerY-C metal 54.9 3.8 8.2E-05 26.1 -0.1 14 21-34 74-87 (131)
353 cd03082 TRX_Fd_NuoE_W_FDH_beta 54.2 24 0.00053 19.7 3.2 16 72-87 45-60 (72)
354 cd04335 PrdX_deacylase This CD 53.8 53 0.0011 20.9 5.1 44 32-79 3-46 (156)
355 KOG1734 Predicted RING-contain 53.3 6.3 0.00014 28.3 0.7 13 20-32 265-278 (328)
356 KOG3170 Conserved phosducin-li 52.9 18 0.0004 25.0 2.9 52 22-81 118-169 (240)
357 PF11324 DUF3126: Protein of u 52.8 39 0.00084 18.7 4.1 31 57-87 4-42 (63)
358 KOG3160 Gamma-interferon induc 52.8 20 0.00044 24.8 3.2 23 18-40 42-69 (220)
359 PF01993 MTD: methylene-5,6,7, 52.3 84 0.0018 22.4 7.1 101 1-111 42-151 (276)
360 PF04805 Pox_E10: E10-like pro 51.7 14 0.00031 20.7 1.9 19 24-42 15-34 (70)
361 cd03035 ArsC_Yffb Arsenate Red 51.4 20 0.00043 21.6 2.7 59 27-88 35-104 (105)
362 cd00897 UGPase_euk Eukaryotic 49.9 98 0.0021 22.5 6.6 25 85-110 115-139 (300)
363 PF14424 Toxin-deaminase: The 49.2 30 0.00064 22.0 3.3 23 17-39 97-120 (133)
364 PF11290 DUF3090: Protein of u 48.6 5 0.00011 26.7 -0.3 26 3-31 136-161 (171)
365 KOG2454 Betaine aldehyde dehyd 48.2 41 0.00089 25.8 4.3 39 11-49 211-254 (583)
366 KOG4598 Putative ubiquitin-spe 48.0 21 0.00046 29.4 2.9 55 5-68 1043-1097(1203)
367 PF01522 Polysacc_deac_1: Poly 47.7 20 0.00044 21.3 2.4 38 6-44 85-122 (123)
368 PRK10558 alpha-dehydro-beta-de 47.5 98 0.0021 21.8 7.5 75 1-81 1-78 (256)
369 PF07912 ERp29_N: ERp29, N-ter 47.3 7.6 0.00017 24.5 0.4 47 61-111 72-123 (126)
370 PF09413 DUF2007: Domain of un 47.3 24 0.00051 19.1 2.4 53 19-82 1-53 (67)
371 PF09248 DUF1965: Domain of un 47.2 27 0.00059 20.0 2.6 34 73-106 26-59 (74)
372 KOG3027 Mitochondrial outer me 47.0 72 0.0016 22.3 5.0 66 25-103 32-99 (257)
373 PF11238 DUF3039: Protein of u 46.9 13 0.00028 20.2 1.2 13 25-37 45-57 (58)
374 PLN02263 serine decarboxylase 46.9 93 0.002 24.2 6.2 75 20-108 180-259 (470)
375 PF00403 HMA: Heavy-metal-asso 46.7 27 0.00058 18.3 2.5 25 25-49 7-33 (62)
376 PRK15348 type III secretion sy 46.3 49 0.0011 23.4 4.3 91 14-107 16-120 (249)
377 cd06390 PBP1_iGluR_AMPA_GluR1 46.3 1.2E+02 0.0025 22.4 7.9 87 4-93 43-139 (364)
378 cd04911 ACT_AKiii-YclM-BS_1 AC 45.2 31 0.00067 19.8 2.7 21 27-47 15-35 (76)
379 PF01949 DUF99: Protein of unk 44.9 18 0.00039 24.4 1.9 49 42-94 37-87 (187)
380 COG1154 Dxs Deoxyxylulose-5-ph 43.9 85 0.0018 25.3 5.6 67 17-89 502-570 (627)
381 TIGR03826 YvyF flagellar opero 43.8 39 0.00085 21.6 3.2 22 19-40 12-42 (137)
382 cd04333 ProX_deacylase This CD 43.7 70 0.0015 20.1 4.5 46 31-79 2-47 (148)
383 cd00755 YgdL_like Family of ac 43.5 26 0.00056 24.3 2.6 22 22-43 151-172 (231)
384 COG1628 Endonuclease V homolog 43.5 77 0.0017 21.5 4.7 51 41-95 41-93 (185)
385 COG3917 NahD 2-hydroxychromene 43.4 72 0.0016 21.7 4.5 22 72-93 175-196 (203)
386 TIGR03847 conserved hypothetic 42.9 6.3 0.00014 26.3 -0.5 25 4-31 139-163 (177)
387 cd03146 GAT1_Peptidase_E Type 42.8 1E+02 0.0023 20.8 8.1 65 27-106 45-110 (212)
388 PLN02225 1-deoxy-D-xylulose-5- 42.7 1.3E+02 0.0027 24.8 6.5 67 18-91 569-637 (701)
389 PF14237 DUF4339: Domain of un 42.3 43 0.00092 16.7 2.7 24 77-100 4-29 (45)
390 PF03691 UPF0167: Uncharacteri 41.0 31 0.00067 23.1 2.5 72 26-105 51-135 (176)
391 COG2608 CopZ Copper chaperone 40.4 41 0.00088 18.6 2.7 17 25-41 11-28 (71)
392 PF05728 UPF0227: Uncharacteri 40.4 70 0.0015 21.4 4.2 61 26-89 10-73 (187)
393 PTZ00494 tuzin-like protein; P 40.0 97 0.0021 24.6 5.3 45 10-54 387-433 (664)
394 TIGR02263 benz_CoA_red_C benzo 40.0 1.1E+02 0.0024 22.8 5.6 44 8-51 311-361 (380)
395 PF15379 DUF4606: Domain of un 39.9 24 0.00053 21.5 1.7 20 19-38 26-45 (104)
396 PF11399 DUF3192: Protein of u 39.8 32 0.00069 21.0 2.2 19 72-90 80-98 (102)
397 PF07908 D-aminoacyl_C: D-amin 39.5 28 0.00062 17.9 1.8 16 72-87 18-33 (48)
398 PLN02234 1-deoxy-D-xylulose-5- 39.2 1.2E+02 0.0026 24.6 5.9 78 18-102 546-627 (641)
399 TIGR02652 conserved hypothetic 39.2 9.7 0.00021 24.6 -0.1 18 21-38 5-23 (163)
400 TIGR00011 YbaK_EbsC ybaK/ebsC 39.0 72 0.0016 20.2 4.0 47 32-79 2-48 (152)
401 PRK02935 hypothetical protein; 38.9 15 0.00034 22.5 0.8 25 13-41 63-87 (110)
402 PF09654 DUF2396: Protein of u 38.7 9.6 0.00021 24.6 -0.1 14 25-38 7-20 (161)
403 cd02127 PA_hPAP21_like PA_hPAP 38.5 95 0.0021 19.1 5.3 73 17-97 35-109 (118)
404 PRK09590 celB cellobiose phosp 37.4 95 0.0021 18.7 4.5 56 28-86 16-88 (104)
405 PF08308 PEGA: PEGA domain; I 37.3 30 0.00064 18.8 1.8 12 76-87 14-25 (71)
406 PF11008 DUF2846: Protein of u 37.1 31 0.00068 21.0 2.0 16 72-87 40-55 (117)
407 PF07728 AAA_5: AAA domain (dy 36.8 99 0.0022 18.8 4.4 40 18-57 1-40 (139)
408 PF08599 Nbs1_C: DNA damage re 36.7 24 0.00051 19.6 1.2 28 72-105 16-44 (65)
409 cd08183 Fe-ADH2 Iron-containin 36.5 1.7E+02 0.0038 21.5 8.2 46 17-62 23-68 (374)
410 PF09673 TrbC_Ftype: Type-F co 36.5 1E+02 0.0022 18.8 5.4 18 62-82 63-80 (113)
411 PRK04195 replication factor C 36.5 2E+02 0.0043 22.1 7.5 36 16-51 39-74 (482)
412 PF13364 BetaGal_dom4_5: Beta- 36.4 34 0.00073 20.8 2.1 17 72-88 62-78 (111)
413 cd05565 PTS_IIB_lactose PTS_II 36.3 77 0.0017 19.0 3.6 53 30-85 17-84 (99)
414 TIGR01012 Sa_S2_E_A ribosomal 36.2 1.2E+02 0.0026 20.7 4.8 48 31-87 50-97 (196)
415 PF07689 KaiB: KaiB domain; I 36.1 7.4 0.00016 22.7 -0.9 47 21-77 2-55 (82)
416 PHA03005 sulfhydryl oxidase; P 36.0 33 0.00071 20.6 1.8 19 24-42 40-59 (96)
417 cd03081 TRX_Fd_NuoE_FDH_gamma 35.9 65 0.0014 18.2 3.1 17 72-88 53-69 (80)
418 PF08874 DUF1835: Domain of un 35.4 1E+02 0.0023 18.6 5.3 42 8-50 78-123 (124)
419 PRK04016 DNA-directed RNA poly 35.4 48 0.001 18.3 2.3 37 74-110 3-42 (62)
420 cd06340 PBP1_ABC_ligand_bindin 35.3 1E+02 0.0022 22.1 4.7 42 4-45 56-98 (347)
421 cd05564 PTS_IIB_chitobiose_lic 35.1 97 0.0021 18.2 4.5 56 29-87 15-85 (96)
422 cd01480 vWA_collagen_alpha_1-V 34.8 1.3E+02 0.0028 19.6 6.0 60 18-82 111-184 (186)
423 KOG4700 Uncharacterized homolo 34.7 37 0.0008 23.0 2.1 32 58-92 101-133 (207)
424 PLN02790 transketolase 33.9 1.5E+02 0.0032 24.0 5.7 89 17-108 541-641 (654)
425 PF01704 UDPGP: UTP--glucose-1 33.9 1.3E+02 0.0027 23.0 5.1 80 30-110 92-194 (420)
426 PRK10834 vancomycin high tempe 33.6 1.6E+02 0.0034 20.8 5.2 44 5-50 127-170 (239)
427 PHA02558 uvsW UvsW helicase; P 33.5 2.1E+02 0.0045 22.1 6.3 39 17-56 345-383 (501)
428 PF13848 Thioredoxin_6: Thiore 33.4 1.3E+02 0.0028 19.1 4.6 63 10-78 87-156 (184)
429 PF01924 HypD: Hydrogenase for 33.1 39 0.00084 25.2 2.2 21 10-31 41-61 (355)
430 cd04816 PA_SaNapH_like PA_SaNa 33.0 1.2E+02 0.0025 18.5 4.7 28 16-44 43-70 (122)
431 TIGR00853 pts-lac PTS system, 32.6 1.1E+02 0.0024 18.0 4.6 57 29-88 19-90 (95)
432 PF12156 ATPase-cat_bd: Putati 32.6 37 0.00081 19.8 1.7 18 26-43 28-45 (88)
433 COG2331 Uncharacterized protei 32.6 22 0.00048 20.5 0.7 19 26-44 35-54 (82)
434 TIGR03191 benz_CoA_bzdO benzoy 32.0 2.3E+02 0.005 21.6 7.1 36 18-53 364-403 (430)
435 TIGR02742 TrbC_Ftype type-F co 32.0 1.4E+02 0.0029 18.9 5.0 15 62-79 63-77 (130)
436 KOG3460 Small nuclear ribonucl 31.8 78 0.0017 18.5 2.9 12 72-83 69-80 (91)
437 PRK15116 sulfur acceptor prote 31.7 51 0.0011 23.5 2.6 22 22-43 170-192 (268)
438 COG1631 RPL42A Ribosomal prote 31.6 14 0.0003 22.1 -0.2 9 24-32 8-16 (94)
439 cd03129 GAT1_Peptidase_E_like 31.6 1.6E+02 0.0035 19.7 9.9 70 16-97 29-101 (210)
440 PLN00020 ribulose bisphosphate 31.5 1.9E+02 0.0042 22.1 5.6 32 19-50 151-182 (413)
441 PRK14175 bifunctional 5,10-met 31.5 2E+02 0.0044 20.8 6.2 51 18-68 34-88 (286)
442 TIGR01917 gly_red_sel_B glycin 31.5 1.4E+02 0.003 23.0 4.9 38 8-46 327-369 (431)
443 PF13451 zf-trcl: Probable zin 31.4 32 0.00069 18.1 1.1 13 25-37 34-46 (49)
444 PRK11892 pyruvate dehydrogenas 31.4 2.4E+02 0.0053 21.8 6.3 68 18-91 342-411 (464)
445 cd00002 YbaK_deacylase This CD 31.3 1.2E+02 0.0026 19.2 4.1 46 32-78 3-48 (152)
446 PF05711 TylF: Macrocin-O-meth 31.2 94 0.002 21.9 3.8 47 6-52 194-241 (248)
447 TIGR01918 various_sel_PB selen 30.9 1.5E+02 0.0033 22.8 5.0 37 8-45 327-368 (431)
448 cd01444 GlpE_ST GlpE sulfurtra 30.6 1.1E+02 0.0023 17.2 4.8 33 10-43 50-82 (96)
449 KOG2863 RNA lariat debranching 30.6 57 0.0012 24.7 2.7 26 56-82 59-84 (456)
450 PF02780 Transketolase_C: Tran 30.4 69 0.0015 19.4 2.8 35 16-50 9-44 (124)
451 TIGR00778 ahpD_dom alkylhydrop 29.8 66 0.0014 16.0 2.3 20 25-44 19-39 (50)
452 PF13394 Fer4_14: 4Fe-4S singl 29.4 71 0.0015 19.0 2.7 18 76-93 51-70 (119)
453 cd06392 PBP1_iGluR_delta_1 N-t 29.3 2.5E+02 0.0054 21.2 8.0 86 5-93 50-160 (400)
454 PRK14167 bifunctional 5,10-met 29.3 2.3E+02 0.0049 20.7 6.2 51 18-68 33-87 (297)
455 COG1223 Predicted ATPase (AAA+ 29.3 2.1E+02 0.0046 21.0 5.3 64 14-81 149-218 (368)
456 PF05949 DUF881: Bacterial pro 29.3 1.2E+02 0.0026 19.5 3.8 34 75-108 79-122 (149)
457 TIGR01686 FkbH FkbH-like domai 29.2 2.2E+02 0.0048 20.5 8.1 72 6-83 36-113 (320)
458 PF04273 DUF442: Putative phos 29.1 1.4E+02 0.003 18.2 4.3 71 8-81 18-94 (110)
459 PRK14180 bifunctional 5,10-met 29.0 2.3E+02 0.0049 20.5 9.4 52 17-68 32-87 (282)
460 PF14268 YoaP: YoaP-like 29.0 57 0.0012 16.7 1.8 11 76-86 24-34 (44)
461 COG0320 LipA Lipoate synthase 28.9 1.7E+02 0.0036 21.4 4.7 44 25-68 82-148 (306)
462 PF04592 SelP_N: Selenoprotein 28.8 1.7E+02 0.0037 20.7 4.6 49 19-67 30-87 (238)
463 COG0848 ExbD Biopolymer transp 28.8 1.4E+02 0.0029 19.0 4.0 46 55-109 81-126 (137)
464 CHL00144 odpB pyruvate dehydro 28.8 2.3E+02 0.0049 20.7 5.6 60 25-91 211-272 (327)
465 COG4391 Uncharacterized protei 28.6 19 0.00041 19.8 0.0 7 26-32 50-56 (62)
466 COG5561 Predicted metal-bindin 27.8 86 0.0019 18.8 2.7 11 19-29 30-41 (101)
467 KOG2501 Thioredoxin, nucleored 27.5 1.9E+02 0.004 19.1 6.5 62 8-79 57-121 (157)
468 cd00291 SirA_YedF_YeeD SirA, Y 27.5 1.1E+02 0.0023 16.3 4.4 14 30-43 39-52 (69)
469 PLN02907 glutamate-tRNA ligase 27.4 3.6E+02 0.0077 22.3 7.1 55 19-94 3-59 (722)
470 PF11823 DUF3343: Protein of u 27.3 51 0.0011 18.2 1.7 14 32-45 54-67 (73)
471 PF04512 Baculo_PEP_N: Baculov 27.2 94 0.002 18.7 2.8 24 72-95 3-27 (97)
472 PF14311 DUF4379: Domain of un 27.2 23 0.00051 18.5 0.2 7 24-30 49-55 (55)
473 KOG4684 Uncharacterized conser 27.1 23 0.0005 24.7 0.2 14 25-38 190-203 (275)
474 PRK08118 topology modulation p 27.0 1.1E+02 0.0023 19.8 3.4 32 17-48 2-33 (167)
475 PRK07114 keto-hydroxyglutarate 27.0 2.2E+02 0.0047 19.7 9.1 79 14-97 12-91 (222)
476 CHL00195 ycf46 Ycf46; Provisio 26.9 3.1E+02 0.0066 21.5 6.2 35 16-50 259-293 (489)
477 PRK07758 hypothetical protein; 26.9 58 0.0013 19.6 1.9 14 18-31 13-26 (95)
478 cd06359 PBP1_Nba_like Type I p 26.6 1.3E+02 0.0028 21.3 4.0 42 4-45 51-93 (333)
479 PRK01178 rps24e 30S ribosomal 26.5 79 0.0017 19.1 2.4 42 36-81 13-55 (99)
480 cd06366 PBP1_GABAb_receptor Li 26.3 1.4E+02 0.0031 21.2 4.2 41 4-44 52-93 (350)
481 cd06352 PBP1_NPR_GC_like Ligan 26.2 1.3E+02 0.0029 21.7 4.1 41 4-44 54-95 (389)
482 TIGR03439 methyl_EasF probable 26.2 66 0.0014 23.5 2.4 30 22-51 80-114 (319)
483 PF07293 DUF1450: Protein of u 26.2 1.4E+02 0.003 17.2 3.5 17 72-88 44-60 (78)
484 PF12949 HeH: HeH/LEM domain; 26.1 40 0.00086 16.3 0.9 13 32-44 8-20 (35)
485 KOG4749 Inositol polyphosphate 25.8 1.7E+02 0.0038 21.8 4.4 56 26-84 156-215 (375)
486 PF07282 OrfB_Zn_ribbon: Putat 25.6 47 0.001 18.0 1.3 15 22-36 26-40 (69)
487 cd04193 UDPGlcNAc_PPase UDPGlc 25.4 2.8E+02 0.006 20.3 5.7 38 72-110 110-159 (323)
488 PLN02683 pyruvate dehydrogenas 25.3 2.4E+02 0.0051 21.0 5.2 69 18-92 230-300 (356)
489 COG1905 NuoE NADH:ubiquinone o 25.0 79 0.0017 20.9 2.4 17 72-88 129-145 (160)
490 TIGR03297 Ppyr-DeCO2ase phosph 25.0 1.3E+02 0.0028 22.4 3.8 54 29-86 103-157 (361)
491 PF11521 TFIIE-A_C-term: C-ter 24.9 67 0.0015 18.9 1.9 12 73-84 39-50 (86)
492 PF11023 DUF2614: Protein of u 24.7 23 0.00049 22.0 -0.2 31 27-57 72-105 (114)
493 PF07131 DUF1382: Protein of u 24.6 1.3E+02 0.0029 16.4 3.0 27 29-55 11-37 (61)
494 PRK03992 proteasome-activating 24.6 3E+02 0.0065 20.5 5.8 33 17-49 166-198 (389)
495 COG2256 MGS1 ATPase related to 24.5 3.4E+02 0.0073 21.0 6.7 63 18-83 50-114 (436)
496 COG1139 Uncharacterized conser 24.5 3.2E+02 0.0069 21.3 5.7 47 4-50 88-136 (459)
497 PRK14174 bifunctional 5,10-met 24.5 2.8E+02 0.0061 20.1 9.4 51 18-68 33-87 (295)
498 cd06348 PBP1_ABC_ligand_bindin 24.4 1.8E+02 0.0039 20.6 4.4 41 4-44 53-94 (344)
499 COG0424 Maf Nucleotide-binding 24.3 1.9E+02 0.0041 19.7 4.2 66 22-93 6-90 (193)
500 TIGR01367 pyrE_Therm orotate p 24.2 27 0.00059 23.3 0.1 11 22-32 167-177 (187)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=100.00 E-value=6.3e-35 Score=177.54 Aligned_cols=98 Identities=55% Similarity=1.034 Sum_probs=94.0
Q ss_pred HHhhcCCcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHH
Q 037432 11 THLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETL 90 (111)
Q Consensus 11 ~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~ 90 (111)
++++++++|++|++++||||++++.+|++++++|+++||+.+++..++++++.+.+|. .++|+|||||++|||++++
T Consensus 2 ~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~---~tvP~Vfi~g~~iGG~ddl 78 (99)
T TIGR02189 2 RRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS---PAVPAVFVGGKLVGGLENV 78 (99)
T ss_pred hhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC---CCcCeEEECCEEEcCHHHH
Confidence 5678999999999999999999999999999999999999999988888899999998 9999999999999999999
Q ss_pred HHHHHcCChHHHHHhcCcccC
Q 037432 91 MACHINGTLVPLLKDAGALWL 111 (111)
Q Consensus 91 ~~~~~~g~L~~~l~~~g~~~~ 111 (111)
.+++++|+|+++|+++|++|+
T Consensus 79 ~~l~~~G~L~~~l~~~~~~~~ 99 (99)
T TIGR02189 79 MALHISGSLVPMLKQAGALWL 99 (99)
T ss_pred HHHHHcCCHHHHHHHhCcccC
Confidence 999999999999999999986
No 2
>PHA03050 glutaredoxin; Provisional
Probab=100.00 E-value=1.4e-33 Score=173.83 Aligned_cols=102 Identities=25% Similarity=0.405 Sum_probs=95.8
Q ss_pred HHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhCCC---CcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCE
Q 037432 6 TYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGV---GPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGK 82 (111)
Q Consensus 6 ~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~v---~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~ 82 (111)
+.++++++++.++|++|+++|||||++++.+|+++++ +|+.+|++......++++++.+.+|. .+||+|||||+
T Consensus 2 ~~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~---~tVP~IfI~g~ 78 (108)
T PHA03050 2 AEEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG---RTVPRIFFGKT 78 (108)
T ss_pred hHHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC---CCcCEEEECCE
Confidence 4578999999999999999999999999999999999 78999999866667788899999998 99999999999
Q ss_pred EEeccHHHHHHHHcCChHHHHHhcCccc
Q 037432 83 FLGGIETLMACHINGTLVPLLKDAGALW 110 (111)
Q Consensus 83 ~igg~~~~~~~~~~g~L~~~l~~~g~~~ 110 (111)
+|||++|+.+++++|+|.++|+++|+++
T Consensus 79 ~iGG~ddl~~l~~~g~L~~~l~~~~~~~ 106 (108)
T PHA03050 79 SIGGYSDLLEIDNMDALGDILSSIGVLR 106 (108)
T ss_pred EEeChHHHHHHHHcCCHHHHHHHccccc
Confidence 9999999999999999999999999986
No 3
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-33 Score=169.40 Aligned_cols=103 Identities=52% Similarity=0.862 Sum_probs=99.2
Q ss_pred hHHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEE
Q 037432 5 KTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFL 84 (111)
Q Consensus 5 ~~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~i 84 (111)
.+.+++++++++++|++|++++||||++++.+|...++.+..+++|.+++..+++.+|.+.+|+ +|||.|||+|++|
T Consensus 2 ~~~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~---~tvP~vFI~Gk~i 78 (104)
T KOG1752|consen 2 AAEAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ---RTVPNVFIGGKFI 78 (104)
T ss_pred cHHHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC---CCCCEEEECCEEE
Confidence 3556899999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred eccHHHHHHHHcCChHHHHHhcCccc
Q 037432 85 GGIETLMACHINGTLVPLLKDAGALW 110 (111)
Q Consensus 85 gg~~~~~~~~~~g~L~~~l~~~g~~~ 110 (111)
||.+++.+++.+|+|..+|+..|++|
T Consensus 79 GG~~dl~~lh~~G~L~~~l~~~~~~~ 104 (104)
T KOG1752|consen 79 GGASDLMALHKSGELVPLLKEAGALW 104 (104)
T ss_pred cCHHHHHHHHHcCCHHHHHHHhhccC
Confidence 99999999999999999999999987
No 4
>PRK10824 glutaredoxin-4; Provisional
Probab=100.00 E-value=1.9e-32 Score=169.85 Aligned_cols=100 Identities=23% Similarity=0.400 Sum_probs=93.1
Q ss_pred hHHHHHHHhhcCCcEEEEEe-----CCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE
Q 037432 5 KTYEIVTHLASSNAVVLFSI-----SGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV 79 (111)
Q Consensus 5 ~~~~~~~~~~~~~~vvif~~-----~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi 79 (111)
+..++++++++.++|++|++ |+||||++++.+|++++++|..+|++.++ +++++|.+.+|. +|||+|||
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~---~~~~~l~~~sg~---~TVPQIFI 76 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNP---DIRAELPKYANW---PTFPQLWV 76 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCH---HHHHHHHHHhCC---CCCCeEEE
Confidence 47789999999999999998 59999999999999999999999998764 466789999998 99999999
Q ss_pred CCEEEeccHHHHHHHHcCChHHHHHhcCccc
Q 037432 80 GGKFLGGIETLMACHINGTLVPLLKDAGALW 110 (111)
Q Consensus 80 ~g~~igg~~~~~~~~~~g~L~~~l~~~g~~~ 110 (111)
||++|||+|++.+++++|+|+++|+++|++|
T Consensus 77 ~G~~IGG~ddl~~l~~~G~L~~lL~~~~~~~ 107 (115)
T PRK10824 77 DGELVGGCDIVIEMYQRGELQQLIKETAAKY 107 (115)
T ss_pred CCEEEcChHHHHHHHHCCCHHHHHHHHHhhh
Confidence 9999999999999999999999999999875
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.96 E-value=2.1e-29 Score=152.70 Aligned_cols=91 Identities=29% Similarity=0.436 Sum_probs=83.7
Q ss_pred HHHHHHhhcCCcEEEEEe-----CCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECC
Q 037432 7 YEIVTHLASSNAVVLFSI-----SGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGG 81 (111)
Q Consensus 7 ~~~~~~~~~~~~vvif~~-----~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g 81 (111)
.+++++++++++|++|++ ++||||.+++++|++++++|+++|++.++ +.++++.+.+|. .+||+|||||
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~---~~~~~l~~~tg~---~tvP~vfi~g 75 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDP---EIRQGIKEYSNW---PTIPQLYVKG 75 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCH---HHHHHHHHHhCC---CCCCEEEECC
Confidence 467889999999999998 89999999999999999999999998664 355689999998 9999999999
Q ss_pred EEEeccHHHHHHHHcCChHHHH
Q 037432 82 KFLGGIETLMACHINGTLVPLL 103 (111)
Q Consensus 82 ~~igg~~~~~~~~~~g~L~~~l 103 (111)
++|||++++.+++++|+|.++|
T Consensus 76 ~~iGG~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 76 EFVGGCDIIMEMYQSGELQTLL 97 (97)
T ss_pred EEEeChHHHHHHHHCcChHHhC
Confidence 9999999999999999999875
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.95 E-value=2.8e-27 Score=141.61 Aligned_cols=85 Identities=27% Similarity=0.448 Sum_probs=77.6
Q ss_pred HHHhhcCCcEEEEEe-----CCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEE
Q 037432 10 VTHLASSNAVVLFSI-----SGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFL 84 (111)
Q Consensus 10 ~~~~~~~~~vvif~~-----~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~i 84 (111)
++++++.++|++|++ ++||+|.+++++|++.+++|+.+|++.++ ++++++.+.+|. .++|+||+||++|
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~---~~~~~l~~~~g~---~tvP~vfi~g~~i 74 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDE---EVRQGLKEYSNW---PTFPQLYVNGELV 74 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCH---HHHHHHHHHhCC---CCCCEEEECCEEE
Confidence 356888999999998 69999999999999999999999998764 456789999998 9999999999999
Q ss_pred eccHHHHHHHHcCChH
Q 037432 85 GGIETLMACHINGTLV 100 (111)
Q Consensus 85 gg~~~~~~~~~~g~L~ 100 (111)
||++++.+++++|+|+
T Consensus 75 GG~~~l~~l~~~g~L~ 90 (90)
T cd03028 75 GGCDIVKEMHESGELQ 90 (90)
T ss_pred eCHHHHHHHHHcCCcC
Confidence 9999999999999985
No 7
>PRK10638 glutaredoxin 3; Provisional
Probab=99.94 E-value=3.4e-26 Score=134.90 Aligned_cols=82 Identities=34% Similarity=0.547 Sum_probs=75.4
Q ss_pred CcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHHc
Q 037432 17 NAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHIN 96 (111)
Q Consensus 17 ~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~~ 96 (111)
.+|++|++++||+|++++.+|++.+++|+.+|++.+++. ++++.+.+|. .++|+||+||+++||++++.+++.+
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~---~~~l~~~~g~---~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAK---REEMIKRSGR---TTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHH---HHHHHHHhCC---CCcCEEEECCEEEeCHHHHHHHHHc
Confidence 479999999999999999999999999999999876543 3578889998 9999999999999999999999999
Q ss_pred CChHHHHH
Q 037432 97 GTLVPLLK 104 (111)
Q Consensus 97 g~L~~~l~ 104 (111)
|+|.++|+
T Consensus 76 g~l~~~~~ 83 (83)
T PRK10638 76 GGLDPLLK 83 (83)
T ss_pred CCHHHHhC
Confidence 99999885
No 8
>PTZ00062 glutaredoxin; Provisional
Probab=99.93 E-value=1e-25 Score=152.20 Aligned_cols=95 Identities=21% Similarity=0.318 Sum_probs=87.5
Q ss_pred hHHHHHHHhhcCCcEEEEEe-----CCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE
Q 037432 5 KTYEIVTHLASSNAVVLFSI-----SGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV 79 (111)
Q Consensus 5 ~~~~~~~~~~~~~~vvif~~-----~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi 79 (111)
+..++++++++.++|++|++ |+||+|++++.+|++++++|..+||+.+++ +++++.+.+|. +|+|+|||
T Consensus 101 ~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~---~~~~l~~~sg~---~TvPqVfI 174 (204)
T PTZ00062 101 DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPD---LREELKVYSNW---PTYPQLYV 174 (204)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHH---HHHHHHHHhCC---CCCCeEEE
Confidence 46788999999999999998 699999999999999999999999997654 45689999998 99999999
Q ss_pred CCEEEeccHHHHHHHHcCChHHHHHh
Q 037432 80 GGKFLGGIETLMACHINGTLVPLLKD 105 (111)
Q Consensus 80 ~g~~igg~~~~~~~~~~g~L~~~l~~ 105 (111)
||++|||++++.+++++|+|.++|.+
T Consensus 175 ~G~~IGG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 175 NGELIGGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred CCEEEcChHHHHHHHHcCChhhhhhh
Confidence 99999999999999999999999865
No 9
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.93 E-value=1e-25 Score=131.46 Aligned_cols=79 Identities=39% Similarity=0.558 Sum_probs=72.7
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHHcCC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHINGT 98 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~~g~ 98 (111)
|++|++++||+|.+++++|++++++|+++|++.++.. ++++.+.+|. .++|+||+||+++||++++.+++++|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~---~~~~~~~~g~---~~vP~i~i~g~~igg~~~~~~~~~~g~ 74 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPAL---RDEMMQRSGR---RTVPQIFIGDVHVGGCDDLYALDREGK 74 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHH---HHHHHHHhCC---CCcCEEEECCEEEcChHHHHHHHHcCC
Confidence 6899999999999999999999999999999977643 3478888898 999999999999999999999999999
Q ss_pred hHHHH
Q 037432 99 LVPLL 103 (111)
Q Consensus 99 L~~~l 103 (111)
|.++|
T Consensus 75 l~~~l 79 (79)
T TIGR02181 75 LDPLL 79 (79)
T ss_pred hhhhC
Confidence 99875
No 10
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.93 E-value=3.6e-25 Score=129.97 Aligned_cols=82 Identities=45% Similarity=0.688 Sum_probs=76.5
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCC--cEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHHc
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVG--PTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHIN 96 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~--~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~~ 96 (111)
|++|+++|||+|++++++|++++++ |+.++++..++..++++++.+.+|. .++|++|+||+++||++++.+++++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~---~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ---RTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC---CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 6899999999999999999999998 9999999887777777789999998 9999999999999999999999999
Q ss_pred CChHHHH
Q 037432 97 GTLVPLL 103 (111)
Q Consensus 97 g~L~~~l 103 (111)
|+|.++|
T Consensus 78 g~l~~~~ 84 (84)
T TIGR02180 78 GKLAELL 84 (84)
T ss_pred CChhhhC
Confidence 9999875
No 11
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.92 E-value=1.9e-24 Score=126.56 Aligned_cols=82 Identities=54% Similarity=0.864 Sum_probs=76.4
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHHcC
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHING 97 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~~g 97 (111)
+|++|++++||+|.+++++|++++++|+.++++.+++..++++++.+.+|. .++|++|++|+++||++++.++.++|
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~---~~~P~v~~~g~~igg~~~~~~~~~~g 77 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ---RTVPNVFIGGKFIGGCDDLMALHKSG 77 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC---CCCCeEEECCEEEcCHHHHHHHHHcC
Confidence 589999999999999999999999999999999887767777789999998 99999999999999999999999999
Q ss_pred ChHHH
Q 037432 98 TLVPL 102 (111)
Q Consensus 98 ~L~~~ 102 (111)
+|+++
T Consensus 78 ~l~~~ 82 (82)
T cd03419 78 KLVKL 82 (82)
T ss_pred CccCC
Confidence 99763
No 12
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5e-24 Score=126.98 Aligned_cols=98 Identities=29% Similarity=0.438 Sum_probs=89.4
Q ss_pred hhHHHHHHHhhcCCcEEEEEe-----CCChhhHHHHHHHhhCC-CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE
Q 037432 4 EKTYEIVTHLASSNAVVLFSI-----SGCCMCTVAKRLLFSLG-VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI 77 (111)
Q Consensus 4 ~~~~~~~~~~~~~~~vvif~~-----~~Cp~C~~~~~~l~~~~-v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v 77 (111)
.+..+++++.+++++|++|.+ |.|.++.++..+|...| ++|..+||-.+++ +++.+++.++. +|+||+
T Consensus 2 ~~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~e---iR~~lk~~s~W---PT~PQL 75 (105)
T COG0278 2 MEILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPE---IRQGLKEYSNW---PTFPQL 75 (105)
T ss_pred chHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHH---HHhccHhhcCC---CCCcee
Confidence 457789999999999999997 67999999999999999 7999999988765 55689999886 999999
Q ss_pred EECCEEEeccHHHHHHHHcCChHHHHHhcC
Q 037432 78 FVGGKFLGGIETLMACHINGTLVPLLKDAG 107 (111)
Q Consensus 78 fi~g~~igg~~~~~~~~~~g~L~~~l~~~g 107 (111)
||+|++|||+|-+.+++++|+|+++|++++
T Consensus 76 yi~GEfvGG~DIv~Em~q~GELq~~l~~~~ 105 (105)
T COG0278 76 YVNGEFVGGCDIVREMYQSGELQTLLKEAG 105 (105)
T ss_pred eECCEEeccHHHHHHHHHcchHHHHHHhcC
Confidence 999999999999999999999999999864
No 13
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.5e-24 Score=125.12 Aligned_cols=78 Identities=35% Similarity=0.600 Sum_probs=69.5
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHHcC
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHING 97 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~~g 97 (111)
.|++|++++||||.+++++|++.|+.|.+++++.++. .+.++.+.+..|+ ++||+||+||+++||++++.++...|
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~---~tvP~I~i~~~~igg~~d~~~~~~~~ 77 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQ---RTVPQIFIGGKHVGGCDDLDALEAKG 77 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCC---CCcCEEEECCEEEeCcccHHHHHhhc
Confidence 5899999999999999999999999999999998874 3344567777798 99999999999999999999998888
Q ss_pred Ch
Q 037432 98 TL 99 (111)
Q Consensus 98 ~L 99 (111)
.|
T Consensus 78 ~l 79 (80)
T COG0695 78 KL 79 (80)
T ss_pred cC
Confidence 76
No 14
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.91 E-value=8.8e-24 Score=136.28 Aligned_cols=86 Identities=28% Similarity=0.394 Sum_probs=75.9
Q ss_pred cEEEEEeC------CChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCC-CCCCcccEEEECCEEEeccHHH
Q 037432 18 AVVLFSIS------GCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSN-GQHQTVPAIFVGGKFLGGIETL 90 (111)
Q Consensus 18 ~vvif~~~------~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~-~~~~~vP~vfi~g~~igg~~~~ 90 (111)
+|++|+++ +||+|.+++.+|++++|+|.++||+++++.. ++|.+.+|. ..+.++|+|||+|++|||++++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~---~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFR---EELRELLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHH---HHHHHHhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 48999999 9999999999999999999999999876533 467777663 1238999999999999999999
Q ss_pred HHHHHcCChHHHHHhc
Q 037432 91 MACHINGTLVPLLKDA 106 (111)
Q Consensus 91 ~~~~~~g~L~~~l~~~ 106 (111)
.+++++|+|.++|+..
T Consensus 78 ~~L~e~G~L~~lL~~~ 93 (147)
T cd03031 78 LRLNESGELRKLLKGI 93 (147)
T ss_pred HHHHHcCCHHHHHhhc
Confidence 9999999999999875
No 15
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.91 E-value=1.9e-23 Score=120.52 Aligned_cols=74 Identities=31% Similarity=0.535 Sum_probs=66.4
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCC-cccEEEECCEEEeccHHHHHHHHc
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQ-TVPAIFVGGKFLGGIETLMACHIN 96 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~-~vP~vfi~g~~igg~~~~~~~~~~ 96 (111)
+|++|++++||+|.+++.+|++++++|++++++.+++ .++++.+.+|. . ++|+||+||+++||++++.+++++
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~---~~~~~~~~~~~---~~~vP~v~i~g~~igg~~~~~~~~~~ 74 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPA---LREEMINRSGG---RRTVPQIFIGDVHIGGCDDLYALERK 74 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHH---HHHHHHHHhCC---CCccCEEEECCEEEeChHHHHHHHhC
Confidence 4899999999999999999999999999999997743 33567778886 6 999999999999999999999988
Q ss_pred C
Q 037432 97 G 97 (111)
Q Consensus 97 g 97 (111)
|
T Consensus 75 g 75 (75)
T cd03418 75 G 75 (75)
T ss_pred c
Confidence 6
No 16
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.90 E-value=2.4e-23 Score=121.73 Aligned_cols=75 Identities=33% Similarity=0.580 Sum_probs=66.5
Q ss_pred hhcCCcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHH
Q 037432 13 LASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMA 92 (111)
Q Consensus 13 ~~~~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~ 92 (111)
+.++++|++|++++||+|++++.+|+++|++|+.+|++.++... ++...+|. .++|+||+||+++||++++.+
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~----~~~~~~g~---~~vP~i~i~g~~igG~~~l~~ 76 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGR----SLRAVTGA---TTVPQVFIGGKLIGGSDELEA 76 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHH----HHHHHHCC---CCcCeEEECCEEEcCHHHHHH
Confidence 45678899999999999999999999999999999998765543 46778898 999999999999999999987
Q ss_pred HH
Q 037432 93 CH 94 (111)
Q Consensus 93 ~~ 94 (111)
+.
T Consensus 77 ~l 78 (79)
T TIGR02190 77 YL 78 (79)
T ss_pred Hh
Confidence 63
No 17
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.89 E-value=5.3e-23 Score=118.44 Aligned_cols=71 Identities=27% Similarity=0.453 Sum_probs=65.1
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHH
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACH 94 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~ 94 (111)
+|++|++++||+|++|+.+|++++++|+.+|++.++... +++.+.+|. .++|+||+||++|||++++.+++
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~---~el~~~~g~---~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERK---AELEERTGS---SVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHH---HHHHHHhCC---CCcCEEEECCEEEeCHHHHHhhc
Confidence 689999999999999999999999999999999876544 478999998 99999999999999999998875
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.89 E-value=1.1e-22 Score=116.82 Aligned_cols=70 Identities=31% Similarity=0.603 Sum_probs=63.2
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHH
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACH 94 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~ 94 (111)
+|++|++++||+|.+++.+|++++++|+.+|++.++... ++...+|. .++|+||+||+++||++++.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~----~~~~~~g~---~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGR----SLRAVTGA---MTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHH----HHHHHhCC---CCcCeEEECCEEEeCHHHHHHHh
Confidence 689999999999999999999999999999998776432 57778898 99999999999999999998864
No 19
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.88 E-value=3e-22 Score=147.58 Aligned_cols=88 Identities=28% Similarity=0.449 Sum_probs=76.7
Q ss_pred CcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHH-----HHHhCCCCCCcccEEEECCEEEeccHHHH
Q 037432 17 NAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVL-----FQLSSNGQHQTVPAIFVGGKFLGGIETLM 91 (111)
Q Consensus 17 ~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l-----~~~~g~~~~~~vP~vfi~g~~igg~~~~~ 91 (111)
.+|+||++++||+|++++.+|++.|++|+++||+.++...++.+++ ...+|. .+||+|||||++|||++++.
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~---~tvP~ifi~~~~igGf~~l~ 78 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI---RTVPQIFVGDVHIGGYDNLM 78 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC---CccCeEEECCEEEeCchHHH
Confidence 4799999999999999999999999999999999877655543332 233677 89999999999999999998
Q ss_pred HHHHcCChHHHHHhcCcc
Q 037432 92 ACHINGTLVPLLKDAGAL 109 (111)
Q Consensus 92 ~~~~~g~L~~~l~~~g~~ 109 (111)
. .+|+|..+|+++|+.
T Consensus 79 ~--~~g~l~~~~~~~~~~ 94 (410)
T PRK12759 79 A--RAGEVIARVKGSSLT 94 (410)
T ss_pred H--HhCCHHHHhcCCccc
Confidence 7 899999999998874
No 20
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.86 E-value=1.8e-21 Score=115.47 Aligned_cols=75 Identities=28% Similarity=0.406 Sum_probs=61.3
Q ss_pred EEEEEeCCChhhHHHHHHHhhCC-----CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLG-----VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMAC 93 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~-----v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~ 93 (111)
|++|++++||+|.+++++|++++ ++|+.+|++.+.... +++.+.+|. ...+||+||+||+++||++++.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~---~~l~~~~g~-~~~tVP~ifi~g~~igG~~dl~~~ 77 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISK---ADLEKTVGK-PVETVPQIFVDEKHVGGCTDFEQL 77 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHH---HHHHHHhCC-CCCCcCeEEECCEEecCHHHHHHH
Confidence 78999999999999999999984 568888887543222 357777773 126999999999999999999999
Q ss_pred HHcC
Q 037432 94 HING 97 (111)
Q Consensus 94 ~~~g 97 (111)
++++
T Consensus 78 ~~~~ 81 (86)
T TIGR02183 78 VKEN 81 (86)
T ss_pred HHhc
Confidence 8764
No 21
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.86 E-value=3.1e-21 Score=114.11 Aligned_cols=75 Identities=29% Similarity=0.379 Sum_probs=63.5
Q ss_pred cEEEEEeCCChhhHHHHHHHhh-----CCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHH
Q 037432 18 AVVLFSISGCCMCTVAKRLLFS-----LGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMA 92 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~-----~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~ 92 (111)
+|++|++++||+|++|+++|++ .+++|..+|++.++... +++.+.+|. .+.++|+||+||+++||++++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~---~el~~~~~~-~~~~vP~ifi~g~~igg~~~~~~ 77 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISK---ADLEKTVGK-PVETVPQIFVDQKHIGGCTDFEA 77 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHH---HHHHHHHCC-CCCcCCEEEECCEEEcCHHHHHH
Confidence 6899999999999999999999 78999999998765333 357777763 23799999999999999999999
Q ss_pred HHHc
Q 037432 93 CHIN 96 (111)
Q Consensus 93 ~~~~ 96 (111)
+.++
T Consensus 78 ~~~~ 81 (85)
T PRK11200 78 YVKE 81 (85)
T ss_pred HHHH
Confidence 8764
No 22
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.84 E-value=2.1e-20 Score=105.86 Aligned_cols=71 Identities=42% Similarity=0.643 Sum_probs=64.6
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHH
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACH 94 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~ 94 (111)
+|++|++++||+|++++.+|++++++|..+|++.+++ .++++.+.+|. .++|++|+||+++||++++.+++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~---~~~~l~~~~~~---~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE---LREELKELSGW---PTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH---HHHHHHHHhCC---CCcCEEEECCEEEecHHHHHHhh
Confidence 5899999999999999999999999999999987765 33578889998 99999999999999999998875
No 23
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.81 E-value=1.3e-19 Score=100.59 Aligned_cols=60 Identities=35% Similarity=0.616 Sum_probs=54.9
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFL 84 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~i 84 (111)
|++|++++||+|.+++++|++.+++|+.+|++.+++ .++++++.+|. .++|+||+||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~---~~~~l~~~~g~---~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEE---AREELKELSGV---RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHH---HHHHHHHHHSS---SSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchh---HHHHHHHHcCC---CccCEEEECCEEC
Confidence 789999999999999999999999999999998874 34578888898 9999999999986
No 24
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=7.9e-19 Score=118.47 Aligned_cols=93 Identities=29% Similarity=0.442 Sum_probs=84.5
Q ss_pred HHHHHhhcCCcEEEEEe-----CCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCE
Q 037432 8 EIVTHLASSNAVVLFSI-----SGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGK 82 (111)
Q Consensus 8 ~~~~~~~~~~~vvif~~-----~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~ 82 (111)
+.++++...++|++|.+ |.|.+.+++..+|++++++|..+||-.+++ +++.+++.+.. +|+||+||+|+
T Consensus 130 ~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~Dee---lRqglK~fSdW---PTfPQlyI~GE 203 (227)
T KOG0911|consen 130 NRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEE---LRQGLKEFSDW---PTFPQLYVKGE 203 (227)
T ss_pred HHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHH---HHHHhhhhcCC---CCccceeECCE
Confidence 37888899999999997 579999999999999999999999988876 55678888886 99999999999
Q ss_pred EEeccHHHHHHHHcCChHHHHHhc
Q 037432 83 FLGGIETLMACHINGTLVPLLKDA 106 (111)
Q Consensus 83 ~igg~~~~~~~~~~g~L~~~l~~~ 106 (111)
++||+|-+.+++++|+|+..|+++
T Consensus 204 FiGGlDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 204 FIGGLDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred eccCcHHHHHHhhcccHHHHhhcC
Confidence 999999999999999999999864
No 25
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.79 E-value=1.1e-18 Score=104.62 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=69.1
Q ss_pred EEEEEeCC------ChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCC-CCCCcccEEEECCEEEeccHHHH
Q 037432 19 VVLFSISG------CCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSN-GQHQTVPAIFVGGKFLGGIETLM 91 (111)
Q Consensus 19 vvif~~~~------Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~-~~~~~vP~vfi~g~~igg~~~~~ 91 (111)
|++|+++- =-.|.+++.+|+..+|+|+++||+.+++.+ +++.+.+|. ....++|+||+||+++||++++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r---~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENR---QWMRENVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHH---HHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 56777653 346789999999999999999999877755 477777641 12389999999999999999999
Q ss_pred HHHHcCChHHHHH
Q 037432 92 ACHINGTLVPLLK 104 (111)
Q Consensus 92 ~~~~~g~L~~~l~ 104 (111)
+++++|+|.++|+
T Consensus 79 ~l~e~g~L~~lLk 91 (92)
T cd03030 79 EAKENNTLEEFLK 91 (92)
T ss_pred HHHhCCCHHHHhC
Confidence 9999999999986
No 26
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.75 E-value=3.6e-18 Score=98.02 Aligned_cols=63 Identities=19% Similarity=0.414 Sum_probs=54.5
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCE-EEeccH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGK-FLGGIE 88 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~-~igg~~ 88 (111)
|++|++++||+|++++++|++++++|+.+|++.++...+ ++.. .|. .+||+++++|+ ++||++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~---~~~~-~g~---~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAID---YVKA-QGF---RQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHH---HHHH-cCC---cccCEEEECCCcEEeccC
Confidence 579999999999999999999999999999998766443 4554 487 89999999775 999995
No 27
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.75 E-value=1e-17 Score=98.36 Aligned_cols=64 Identities=19% Similarity=0.405 Sum_probs=56.5
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccH
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIE 88 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~ 88 (111)
+|++|++++||+|++++.+|++.|++|+++|++.+++..+ ++.. .|. .++|+++++|..++||+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~---~~~~-~g~---~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAE---TLRA-QGF---RQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHH---HHHH-cCC---CCcCEEEECCEEEecCC
Confidence 6899999999999999999999999999999998765443 4544 587 89999999999999995
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.65 E-value=1.2e-15 Score=86.67 Aligned_cols=65 Identities=25% Similarity=0.477 Sum_probs=57.0
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccH
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIE 88 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~ 88 (111)
+|++|+.+|||+|++++.+|++.+++|..+|++.++... +++.+.+|. .++|+++++|+.++|++
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~---~~~~~~~~~---~~vP~~~~~~~~~~g~~ 65 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAR---EEVLKVLGQ---RGVPVIVIGHKIIVGFD 65 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHH---HHHHHHhCC---CcccEEEECCEEEeeCC
Confidence 378999999999999999999999999999998765533 357778898 99999999999998875
No 29
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.59 E-value=1e-14 Score=82.60 Aligned_cols=66 Identities=24% Similarity=0.478 Sum_probs=57.2
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHH
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIET 89 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~ 89 (111)
++++|+.+|||+|++++.+|++.+++|..++++.++... +++.+.++. .++|+++++|+.++|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~---~~~~~~~~~---~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEAL---EELKKLNGY---RSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHH---HHHHHHcCC---cccCEEEECCEEEecCCH
Confidence 478999999999999999999999999999998754433 457777787 999999999999999874
No 30
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.9e-15 Score=102.30 Aligned_cols=89 Identities=25% Similarity=0.393 Sum_probs=76.6
Q ss_pred CCcEEEEEeC------CChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCC-CCCCcccEEEECCEEEeccH
Q 037432 16 SNAVVLFSIS------GCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSN-GQHQTVPAIFVGGKFLGGIE 88 (111)
Q Consensus 16 ~~~vvif~~~------~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~-~~~~~vP~vfi~g~~igg~~ 88 (111)
++.||+|+++ +--.|..++.+|+.++|.|.+.||.++...+ ++|+++.|. ....+.|+|||+|++|||.+
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr---~EL~~~lg~~~~~~~LPrVFV~GryIGgae 206 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFR---EELQELLGEDEKAVSLPRVFVKGRYIGGAE 206 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHH---HHHHHHHhcccccCccCeEEEccEEeccHH
Confidence 4569999975 5788999999999999999999999987755 367776664 33589999999999999999
Q ss_pred HHHHHHHcCChHHHHHhcC
Q 037432 89 TLMACHINGTLVPLLKDAG 107 (111)
Q Consensus 89 ~~~~~~~~g~L~~~l~~~g 107 (111)
++.++++.|+|.++|++..
T Consensus 207 eV~~LnE~GkL~~lL~~~p 225 (281)
T KOG2824|consen 207 EVVRLNEEGKLGKLLKGIP 225 (281)
T ss_pred HhhhhhhcchHHHHHhcCC
Confidence 9999999999999998753
No 31
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.57 E-value=8e-15 Score=82.61 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=49.6
Q ss_pred cEEEEEeCCChhhHHHHHHHhhC-----CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEec
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSL-----GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGG 86 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~-----~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg 86 (111)
.|++|+++|||+|.+++++|+++ ++++..+|++.+++ +.+.+|. .++|+++++|++++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~-------l~~~~~i---~~vPti~i~~~~~~~ 65 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD-------LADEYGV---MSVPAIVINGKVEFV 65 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh-------HHHHcCC---cccCEEEECCEEEEe
Confidence 48899999999999999999876 57777788776543 7778898 999999999998753
No 32
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.55 E-value=7.3e-14 Score=80.21 Aligned_cols=65 Identities=22% Similarity=0.410 Sum_probs=53.4
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHh-CCCCCCcccEEEE-CCEEEeccH
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLS-SNGQHQTVPAIFV-GGKFLGGIE 88 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~-g~~~~~~vP~vfi-~g~~igg~~ 88 (111)
+|++|+++|||+|++++.+|++.+++|..+|++.++... +.+...+ |. .++|++++ ||+.+....
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~---~~~~~~~~~~---~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAA---DRVVSVNNGN---MTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHH---HHHHHHhCCC---ceeCEEEECCCeEecCCC
Confidence 478999999999999999999999999999998776544 3566665 77 89999976 667766553
No 33
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.43 E-value=1.6e-12 Score=78.65 Aligned_cols=84 Identities=18% Similarity=0.204 Sum_probs=59.8
Q ss_pred cEEEEEeCCCh------hhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhC------CCCCCcccEEEECCEEEe
Q 037432 18 AVVLFSISGCC------MCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSS------NGQHQTVPAIFVGGKFLG 85 (111)
Q Consensus 18 ~vvif~~~~Cp------~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g------~~~~~~vP~vfi~g~~ig 85 (111)
.|.+|+++.-. .|.++..+|+..+|+|+.+||..+++.++ .+++..| .....-.|+||+||+++|
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~---~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQ---WMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHH---HHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHH---HHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 46778765433 34588899999999999999998766554 6776663 011245589999999999
Q ss_pred ccHHHHHHHHcCChHHHHH
Q 037432 86 GIETLMACHINGTLVPLLK 104 (111)
Q Consensus 86 g~~~~~~~~~~g~L~~~l~ 104 (111)
+++++.++.++++|.+.|+
T Consensus 79 dye~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 79 DYEDFEEANENGELEEFLK 97 (99)
T ss_dssp EHHHHHHHHCTT-HHHHHT
T ss_pred eHHHHHHHHhhCHHHHHhC
Confidence 9999999999999999986
No 34
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.39 E-value=1.8e-12 Score=77.25 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=57.5
Q ss_pred HHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhC-----CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEEC
Q 037432 6 TYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSL-----GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVG 80 (111)
Q Consensus 6 ~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~-----~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~ 80 (111)
.++.++++-++-.|.+|+.+|||+|..+.++++++ ++++..+|++..++ +.+.+|. .++|++++|
T Consensus 3 ~~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e-------~a~~~~V---~~vPt~vid 72 (89)
T cd03026 3 LLEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD-------EVEERGI---MSVPAIFLN 72 (89)
T ss_pred HHHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH-------HHHHcCC---ccCCEEEEC
Confidence 46777776666679999999999999999988765 57788888886644 7778999 999999999
Q ss_pred CEEEe
Q 037432 81 GKFLG 85 (111)
Q Consensus 81 g~~ig 85 (111)
|+.++
T Consensus 73 G~~~~ 77 (89)
T cd03026 73 GELFG 77 (89)
T ss_pred CEEEE
Confidence 98765
No 35
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.31 E-value=2.5e-11 Score=70.23 Aligned_cols=71 Identities=13% Similarity=0.231 Sum_probs=58.3
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE--CCEEEeccHHHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV--GGKFLGGIETLMACHI 95 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi--~g~~igg~~~~~~~~~ 95 (111)
+++|+.+.||+|++++.+|+++|++|+.++++...... +++...++. .+||++.. +|..+.+...|.++..
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~---~~~~~~~p~---~~vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKR---DKFLEKGGK---VQVPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHH---HHHHHhCCC---CcccEEEeCCCCeEEEcHHHHHHHHH
Confidence 67999999999999999999999999999997543222 357777787 89999977 3678899888888654
No 36
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.28 E-value=5e-11 Score=66.20 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=58.0
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHH
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMAC 93 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~ 93 (111)
.+|+.++||+|.+++.+|+..+++|+.++++..+.... ++...++. .++|.+..+|..+++...+.+.
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~---~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE---EFLALNPL---GKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCC---CCCCEEEECCEEEEcHHHHHHH
Confidence 68999999999999999999999999998876554332 46677787 9999999999999999877765
No 37
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.27 E-value=4.5e-11 Score=67.88 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=55.9
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEEC-CEEEeccHHHHHHHH
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVG-GKFLGGIETLMACHI 95 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~-g~~igg~~~~~~~~~ 95 (111)
.+|+.++||+|++++.+|...|++|+.+.++..+... ..+..+. .++|+++.+ |..+++...+.++..
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~-----~~~~~~~---~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEAT-----PIRMIGA---KQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHH-----HHHhcCC---CccCEEEeCCCeEeehHHHHHHHHh
Confidence 5899999999999999999999999999887543221 2345676 899999987 899999999888654
No 38
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.23 E-value=4.6e-11 Score=69.27 Aligned_cols=55 Identities=25% Similarity=0.413 Sum_probs=41.7
Q ss_pred cEEEEEeCCChhhHHHHHHHhh----CC--CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCE
Q 037432 18 AVVLFSISGCCMCTVAKRLLFS----LG--VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGK 82 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~----~~--v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~ 82 (111)
.|++|+++|||+|..+++.|.+ ++ +.+..+|++.+++ +.+.+|. .++|+++++|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~-------~~~~~~v---~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ-------KAMEYGI---MAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH-------HHHHcCC---ccCCEEEECCE
Confidence 4789999999999999999875 34 3344555554332 5566898 99999999997
No 39
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.23 E-value=1.2e-10 Score=67.05 Aligned_cols=69 Identities=20% Similarity=0.346 Sum_probs=55.8
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEEC----CEEEeccHHHHHH
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVG----GKFLGGIETLMAC 93 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~----g~~igg~~~~~~~ 93 (111)
++.+|+.+.||+|++++.+|.+.|++|+.++++... .. .+ ...+. .++|+++.+ |..+.....+.++
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~-~~----~~-~~~~~---~~vP~l~~~~~~~~~~l~eS~~I~~y 71 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS-RK----EI-KWSSY---KKVPILRVESGGDGQQLVDSSVIIST 71 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh-HH----HH-HHhCC---CccCEEEECCCCCccEEEcHHHHHHH
Confidence 478999999999999999999999999999886432 11 24 34676 899999987 7888888888876
Q ss_pred HH
Q 037432 94 HI 95 (111)
Q Consensus 94 ~~ 95 (111)
.+
T Consensus 72 L~ 73 (77)
T cd03040 72 LK 73 (77)
T ss_pred HH
Confidence 43
No 40
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.19 E-value=2.8e-10 Score=64.67 Aligned_cols=67 Identities=21% Similarity=0.361 Sum_probs=55.9
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEEC-CEEEeccHHHHHH
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVG-GKFLGGIETLMAC 93 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~-g~~igg~~~~~~~ 93 (111)
++|+.++||+|++++.+|.++|++|+.++++...... ++.+.++. .+||++..+ |..+.....+.++
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~----~~~~~np~---~~vP~L~~~~g~~l~eS~aI~~y 69 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPA----EMLAASPK---GTVPVLVLGNGTVIEESLDIMRW 69 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCH----HHHHHCCC---CCCCEEEECCCcEEecHHHHHHh
Confidence 6899999999999999999999999999887643322 47778887 999999985 8888887776654
No 41
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.16 E-value=1.9e-10 Score=72.21 Aligned_cols=79 Identities=8% Similarity=0.057 Sum_probs=50.9
Q ss_pred HHHHHhhcCCc--EEEEEeCCChhhHHHHHHHhhC----CCCcEEEEccCCc--c---hHHHHHHHHHHhCC-CCCCccc
Q 037432 8 EIVTHLASSNA--VVLFSISGCCMCTVAKRLLFSL----GVGPTIVELDHHV--A---GREIQAVLFQLSSN-GQHQTVP 75 (111)
Q Consensus 8 ~~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~----~v~~~~i~v~~~~--~---~~~~~~~l~~~~g~-~~~~~vP 75 (111)
+.+.+.++... ++.|+++|||+|+.+.+.|.+. ++++..+|++.+. + ..++ .++.+.++. .....+|
T Consensus 14 ~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~-~~~~~~~~i~~~i~~~P 92 (122)
T TIGR01295 14 VRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDL-TAFRSRFGIPTSFMGTP 92 (122)
T ss_pred HHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHH-HHHHHHcCCcccCCCCC
Confidence 44555555433 6778899999999988888765 5778888998543 1 1122 244455443 0015699
Q ss_pred EE--EECCEEEecc
Q 037432 76 AI--FVGGKFLGGI 87 (111)
Q Consensus 76 ~v--fi~g~~igg~ 87 (111)
++ |-+|+.++..
T Consensus 93 T~v~~k~Gk~v~~~ 106 (122)
T TIGR01295 93 TFVHITDGKQVSVR 106 (122)
T ss_pred EEEEEeCCeEEEEE
Confidence 97 6799776554
No 42
>PHA02125 thioredoxin-like protein
Probab=99.14 E-value=1.7e-10 Score=66.45 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=43.1
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFL 84 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~i 84 (111)
|++|+.+|||+|+.++++|++. .+..+++|.+.. .++...++. .++|++. +|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~-----~~l~~~~~v---~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEG-----VELTAKHHI---RSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCC-----HHHHHHcCC---ceeCeEE-CCEEE
Confidence 7899999999999999999865 455666665443 247888898 9999987 77644
No 43
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.13 E-value=9e-10 Score=62.52 Aligned_cols=70 Identities=20% Similarity=0.188 Sum_probs=57.6
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
+++|+.+.||+|++++..|.+.|++|+.++++...... ++.+.++. .++|++..+|..+.....+..+..
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~----~~~~~~p~---~~vP~l~~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPE----DLAELNPY---GTVPTLVDRDLVLYESRIIMEYLD 70 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCH----HHHhhCCC---CCCCEEEECCEEEEcHHHHHHHHH
Confidence 46899999999999999999999999998887543322 46677777 899999989888888887777643
No 44
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.11 E-value=4.3e-10 Score=69.64 Aligned_cols=57 Identities=26% Similarity=0.426 Sum_probs=42.6
Q ss_pred hhcCCcEEEE-EeCCChhhHHHHHHHhhCC-----CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE
Q 037432 13 LASSNAVVLF-SISGCCMCTVAKRLLFSLG-----VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV 79 (111)
Q Consensus 13 ~~~~~~vvif-~~~~Cp~C~~~~~~l~~~~-----v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi 79 (111)
+.+..++++| +++|||+|+.++++|++.. +.+..+|++..+ ++...++. .++|++++
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~-------~l~~~~~v---~~vPt~~i 81 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK-------EKAEKYGV---ERVPTTIF 81 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH-------HHHHHcCC---CcCCEEEE
Confidence 4445556555 6899999999999998763 455666766543 48888999 99999977
No 45
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.07 E-value=2.3e-09 Score=63.63 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=58.6
Q ss_pred CCcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEEC-CEEEeccHHHHHH
Q 037432 16 SNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVG-GKFLGGIETLMAC 93 (111)
Q Consensus 16 ~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~-g~~igg~~~~~~~ 93 (111)
...+++|+.+.||+|++++.+|...|++|+.++++..... +++...++. .++|++.++ |..+.....|..+
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~----~~~~~~np~---~~vPvL~~~~g~~l~eS~aI~~y 87 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKP----DWFLEKNPQ---GKVPALEIDEGKVVYESLIICEY 87 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCc----HHHHhhCCC---CCcCEEEECCCCEEECHHHHHHh
Confidence 3458999999999999999999999999999988754322 247777887 899999998 8888888777665
No 46
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=99.07 E-value=4.3e-10 Score=69.51 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=39.3
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSS 67 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g 67 (111)
|++|+.++||+|++++++|+++|++|+++|+..++...+....+...+|
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~~ 49 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKSG 49 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHcC
Confidence 5799999999999999999999999999999887765543333334433
No 47
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.05 E-value=1e-09 Score=63.39 Aligned_cols=54 Identities=15% Similarity=0.452 Sum_probs=40.7
Q ss_pred EEEEEeCCChhhHHHHH----HHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEE
Q 037432 19 VVLFSISGCCMCTVAKR----LLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFL 84 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~----~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~i 84 (111)
|.+|+ +|||.|..+.+ +++++++++..++++..+ ....+|. .++|++++||+.+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~--------~a~~~~v---~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMN--------EILEAGV---TATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHH--------HHHHcCC---CcCCEEEECCEEE
Confidence 55665 99999999854 666778888888888321 1234688 9999999999654
No 48
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=99.03 E-value=7.8e-10 Score=67.54 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=35.2
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGRE 57 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~ 57 (111)
|++|+.++||+|++++.+|++.|++|+++|+...+...+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~ 39 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKE 39 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHH
Confidence 579999999999999999999999999999987666554
No 49
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=99.01 E-value=3.3e-09 Score=62.03 Aligned_cols=53 Identities=25% Similarity=0.562 Sum_probs=43.3
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCC----CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECC
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLG----VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGG 81 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~----v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g 81 (111)
++++|++++|+.|..++..|.+.. +.++.+||+.+++ +.+.+| ..+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~-------l~~~Y~----~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE-------LFEKYG----YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH-------HHHHSC----TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH-------HHHHhc----CCCCEEEEcC
Confidence 489999999999999999999763 4567888885533 888999 5899999999
No 50
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.01 E-value=2.1e-09 Score=60.90 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=54.1
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE-CCEEEeccHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV-GGKFLGGIETLMAC 93 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi-~g~~igg~~~~~~~ 93 (111)
+.+|+.++||+|++++.+|...+++|+.+.++...... ..+++.+.++. .++|++.+ ||..+.....+..+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~-~~~~~~~~~p~---~~vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQ-RSPEFLAKNPA---GTVPVLELDDGTVITESVAICRY 72 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCcc-CCHHHHhhCCC---CCCCEEEeCCCCEEecHHHHHHH
Confidence 36899999999999999999999999888876432100 01247777787 89999987 66777777766654
No 51
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.00 E-value=3.4e-09 Score=60.86 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=58.9
Q ss_pred EEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 21 LFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 21 if~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
+|+.++||+|++++-+|...|++|+.++++..... +.+.+.++. .++|++..||..+.+...|.++..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~----~~~~~~~p~---~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKR----PEFLKLNPK---GKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTS----HHHHHHSTT---SBSSEEEETTEEEESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccch----hHHHhhccc---ccceEEEECCEEEeCHHHHHHHHH
Confidence 58999999999999999999999999998855432 357788887 999999999999999999888654
No 52
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.99 E-value=7e-09 Score=59.00 Aligned_cols=72 Identities=17% Similarity=0.289 Sum_probs=56.7
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACH 94 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~ 94 (111)
+.+|+.+.||+|++++.+|.+.|++|+.++++..... ...+++.+.+.. .++|.+..+|..+.....+..+.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~-~~~~~~~~~~p~---~~vP~l~~~~~~l~es~aI~~yL 72 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGE-HLKPEFLKLNPQ---HTVPTLVDNGFVLWESHAILIYL 72 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCC-cCCHHHHhhCcC---CCCCEEEECCEEEEcHHHHHHHH
Confidence 3689999999999999999999999999888743221 011357778777 89999999988888777776653
No 53
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.97 E-value=2.2e-09 Score=68.21 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=38.3
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQL 65 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~ 65 (111)
|++|+.++||+|++++++|++.|++|+++|+..++...+....+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~ 48 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILRM 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHHH
Confidence 78999999999999999999999999999998776654433333333
No 54
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.96 E-value=3.9e-09 Score=65.35 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=49.9
Q ss_pred HHHHHHHhhcCC-c-EEEEEeCCChhhHHHHHHHhhC-----CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE-
Q 037432 6 TYEIVTHLASSN-A-VVLFSISGCCMCTVAKRLLFSL-----GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI- 77 (111)
Q Consensus 6 ~~~~~~~~~~~~-~-vvif~~~~Cp~C~~~~~~l~~~-----~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v- 77 (111)
+.+.+.+.++.+ . ++.|+.+|||.|+.+.+.|.++ ++.+..+|++..++ +.+.++. .++|++
T Consensus 11 ~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~-------l~~~~~v---~~vPt~l 80 (113)
T cd02989 11 DEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF-------LVEKLNI---KVLPTVI 80 (113)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH-------HHHHCCC---ccCCEEE
Confidence 334555555443 3 4457789999999999988764 45555566665443 7788898 999997
Q ss_pred -EECCEEEecc
Q 037432 78 -FVGGKFLGGI 87 (111)
Q Consensus 78 -fi~g~~igg~ 87 (111)
|-+|+.++-.
T Consensus 81 ~fk~G~~v~~~ 91 (113)
T cd02989 81 LFKNGKTVDRI 91 (113)
T ss_pred EEECCEEEEEE
Confidence 6699766433
No 55
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.96 E-value=4.5e-09 Score=65.23 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=43.9
Q ss_pred EEEEEeCCChhhHHHHHHHhhCC------CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEEe
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLG------VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFLG 85 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~------v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~ig 85 (111)
|+-|+.+|||.|+.+.+.|+++. +.+-.+|+|..++ +.+.+|. .++|++ |-+|+.++
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~-------la~~~~V---~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD-------FNKMYEL---YDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH-------HHHHcCC---CCCCEEEEEECCEEEE
Confidence 44599999999999999997652 3455667776644 8888998 999997 67888763
No 56
>PHA02278 thioredoxin-like protein
Probab=98.94 E-value=9.2e-09 Score=62.82 Aligned_cols=72 Identities=14% Similarity=0.277 Sum_probs=49.4
Q ss_pred HHHHHHhhc-CCc-EEEEEeCCChhhHHHHHHHhhC------CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE-
Q 037432 7 YEIVTHLAS-SNA-VVLFSISGCCMCTVAKRLLFSL------GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI- 77 (111)
Q Consensus 7 ~~~~~~~~~-~~~-vvif~~~~Cp~C~~~~~~l~~~------~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v- 77 (111)
.+.+++.++ ..+ ++-|+++||+.|+.+.+.|++. .+++..+|+|.++... +.+.+.++. .++|++
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~---~~l~~~~~I---~~iPT~i 77 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDR---EKAVKLFDI---MSTPVLI 77 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcccccc---HHHHHHCCC---ccccEEE
Confidence 344455444 334 4458899999999999888664 2346677888654321 248888898 999997
Q ss_pred -EECCEEE
Q 037432 78 -FVGGKFL 84 (111)
Q Consensus 78 -fi~g~~i 84 (111)
|-||+.+
T Consensus 78 ~fk~G~~v 85 (103)
T PHA02278 78 GYKDGQLV 85 (103)
T ss_pred EEECCEEE
Confidence 5688765
No 57
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.94 E-value=3.3e-09 Score=72.38 Aligned_cols=68 Identities=19% Similarity=0.302 Sum_probs=48.1
Q ss_pred hHHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhCC-----CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE
Q 037432 5 KTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLG-----VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV 79 (111)
Q Consensus 5 ~~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~-----v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi 79 (111)
++.+.++.+-+.-.|++|+.+|||+|..++.+++++. +.+..+|++..+ ++...+|. .++|++++
T Consensus 123 ~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~-------~~~~~~~V---~~vPtl~i 192 (215)
T TIGR02187 123 KTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENP-------DLAEKYGV---MSVPKIVI 192 (215)
T ss_pred HHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCH-------HHHHHhCC---ccCCEEEE
Confidence 3455555543444467799999999999999998753 444455555443 37778898 99999988
Q ss_pred CCE
Q 037432 80 GGK 82 (111)
Q Consensus 80 ~g~ 82 (111)
+++
T Consensus 193 ~~~ 195 (215)
T TIGR02187 193 NKG 195 (215)
T ss_pred ecC
Confidence 753
No 58
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.93 E-value=3.1e-09 Score=66.15 Aligned_cols=49 Identities=18% Similarity=0.372 Sum_probs=41.2
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSS 67 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g 67 (111)
|++|+.++||+|++++++|++.|++|+.+|+...+...+....+.+.+|
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLE 49 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcC
Confidence 5799999999999999999999999999999887776654445555555
No 59
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.91 E-value=4.5e-09 Score=79.84 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=57.1
Q ss_pred chhHHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhCC-----CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE
Q 037432 3 LEKTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLG-----VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI 77 (111)
Q Consensus 3 ~~~~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~-----v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v 77 (111)
++++.+.++++.++..|.+|.+++||||..+...+.++. |..+.+|....++ +.+.++. .+||++
T Consensus 104 ~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~-------~~~~~~v---~~VP~~ 173 (517)
T PRK15317 104 DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD-------EVEARNI---MAVPTV 173 (517)
T ss_pred CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh-------HHHhcCC---cccCEE
Confidence 356677888877777899999999999999999998763 4445555554544 7788898 999999
Q ss_pred EECCEEEe
Q 037432 78 FVGGKFLG 85 (111)
Q Consensus 78 fi~g~~ig 85 (111)
|+||+.+.
T Consensus 174 ~i~~~~~~ 181 (517)
T PRK15317 174 FLNGEEFG 181 (517)
T ss_pred EECCcEEE
Confidence 99997654
No 60
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.90 E-value=2.3e-08 Score=56.50 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=55.8
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMAC 93 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~ 93 (111)
+++|+.+.||+|.+++.+|...|++|+.++++..... ...+++.+.+.. .++|++..+|..+.....+..+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~-~~~~~~~~~~p~---~~vP~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGE-TRTPEFLALNPN---GEVPVLELDGRVLAESNAILVY 71 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcc-cCCHHHHHhCCC---CCCCEEEECCEEEEcHHHHHHH
Confidence 3689999999999999999999999999988743211 111346677777 8999999999988887776654
No 61
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.89 E-value=7.1e-09 Score=65.98 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=38.7
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHh
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLS 66 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~ 66 (111)
|++|+.++|+.|++++++|++.|++|+++|+..++...+....+.+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~ 49 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILTKT 49 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHHHh
Confidence 789999999999999999999999999999987665544333444433
No 62
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.88 E-value=7.1e-09 Score=78.77 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=56.8
Q ss_pred chhHHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhCCC-----CcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE
Q 037432 3 LEKTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGV-----GPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI 77 (111)
Q Consensus 3 ~~~~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~v-----~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v 77 (111)
++++.+.++++.++..|.+|.+++||||..+...+.++.+ ..+.+|....++ +.+.++. .+||++
T Consensus 105 ~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~-------~~~~~~v---~~VP~~ 174 (515)
T TIGR03140 105 DEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQD-------EVEALGI---QGVPAV 174 (515)
T ss_pred CHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH-------HHHhcCC---cccCEE
Confidence 3567778887777778999999999999999999987643 334444444433 7788898 999999
Q ss_pred EECCEEEec
Q 037432 78 FVGGKFLGG 86 (111)
Q Consensus 78 fi~g~~igg 86 (111)
|+||+.++.
T Consensus 175 ~i~~~~~~~ 183 (515)
T TIGR03140 175 FLNGEEFHN 183 (515)
T ss_pred EECCcEEEe
Confidence 999976543
No 63
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.87 E-value=9.5e-09 Score=63.82 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=38.6
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHh
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLS 66 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~ 66 (111)
+++|+.++||+|++++++|++.|++|+.+|+..++...+....+.+.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHHh
Confidence 789999999999999999999999999999987665544333444443
No 64
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.86 E-value=9.2e-09 Score=65.37 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=38.1
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQL 65 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~ 65 (111)
|+||+.++|+.|++++++|++.|++|+.+|+..++...+....+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 78999999999999999999999999999998766544433334333
No 65
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.86 E-value=9.2e-09 Score=63.03 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=38.3
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSS 67 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g 67 (111)
|++|+.++|+.|++++++|++.|++|+++|+...|-..+....+.+..|
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 5799999999999999999999999999999776654443333333333
No 66
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.82 E-value=1.2e-08 Score=78.26 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=57.4
Q ss_pred chhHHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhC-----CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE
Q 037432 3 LEKTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSL-----GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI 77 (111)
Q Consensus 3 ~~~~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~-----~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v 77 (111)
+++..+.++++-++-.|.+|..++||+|..+...+++. +|..+.+|+...++ +.+.++. .+||.+
T Consensus 464 ~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~-------~~~~~~v---~~vP~~ 533 (555)
T TIGR03143 464 GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD-------LKDEYGI---MSVPAI 533 (555)
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH-------HHHhCCc---eecCEE
Confidence 45667778777667679999999999999888766543 57788888887754 7788999 999999
Q ss_pred EECCEE
Q 037432 78 FVGGKF 83 (111)
Q Consensus 78 fi~g~~ 83 (111)
+|||+.
T Consensus 534 ~i~~~~ 539 (555)
T TIGR03143 534 VVDDQQ 539 (555)
T ss_pred EECCEE
Confidence 999963
No 67
>PRK09381 trxA thioredoxin; Provisional
Probab=98.82 E-value=1.6e-08 Score=61.71 Aligned_cols=59 Identities=14% Similarity=0.230 Sum_probs=41.4
Q ss_pred EEEEEeCCChhhHHHHHHHhhC----C--CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE--ECCEEEecc
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL----G--VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF--VGGKFLGGI 87 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~----~--v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf--i~g~~igg~ 87 (111)
++.|+.+|||+|+.+.+.|+++ + +.+..+|++..+. +...++. .++|+++ -+|+.++.+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~-------~~~~~~v---~~~Pt~~~~~~G~~~~~~ 91 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-------TAPKYGI---RGIPTLLLFKNGEVAATK 91 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh-------HHHhCCC---CcCCEEEEEeCCeEEEEe
Confidence 5568899999999998888653 2 3344556555433 5667788 9999984 488876533
No 68
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1e-08 Score=66.03 Aligned_cols=67 Identities=24% Similarity=0.288 Sum_probs=50.1
Q ss_pred HHHHHhh-cCCc-EEEEEeCCChhhHHHHHHHhhCC------CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--
Q 037432 8 EIVTHLA-SSNA-VVLFSISGCCMCTVAKRLLFSLG------VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI-- 77 (111)
Q Consensus 8 ~~~~~~~-~~~~-vvif~~~~Cp~C~~~~~~l~~~~------v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v-- 77 (111)
++-...+ +..+ +|-|+.+||..|+.+.+.|+++. +++-.+|+|++++ +...++. ..+|++
T Consensus 52 ~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e-------la~~Y~I---~avPtvlv 121 (150)
T KOG0910|consen 52 EFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE-------LAEDYEI---SAVPTVLV 121 (150)
T ss_pred HHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc-------hHhhcce---eeeeEEEE
Confidence 3333333 3455 55699999999999999998762 4455677777766 8889999 999997
Q ss_pred EECCEEE
Q 037432 78 FVGGKFL 84 (111)
Q Consensus 78 fi~g~~i 84 (111)
|.||+.+
T Consensus 122 fknGe~~ 128 (150)
T KOG0910|consen 122 FKNGEKV 128 (150)
T ss_pred EECCEEe
Confidence 7799765
No 69
>PTZ00051 thioredoxin; Provisional
Probab=98.78 E-value=3.9e-08 Score=58.66 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=49.8
Q ss_pred hHHHHHHHhhcCCc--EEEEEeCCChhhHHHHHHHhhC-----CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE
Q 037432 5 KTYEIVTHLASSNA--VVLFSISGCCMCTVAKRLLFSL-----GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI 77 (111)
Q Consensus 5 ~~~~~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~-----~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v 77 (111)
.+.+.++++++.++ ++.|+.+||++|+.+.+.|.+. ++.+..+|++..+ .+.+.++. ..+|++
T Consensus 6 ~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~-------~~~~~~~v---~~~Pt~ 75 (98)
T PTZ00051 6 TSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELS-------EVAEKENI---TSMPTF 75 (98)
T ss_pred cCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchH-------HHHHHCCC---ceeeEE
Confidence 34566777776666 4568899999999998888764 3444555554322 37777888 899987
Q ss_pred --EECCEEEecc
Q 037432 78 --FVGGKFLGGI 87 (111)
Q Consensus 78 --fi~g~~igg~ 87 (111)
|-+|+.++.+
T Consensus 76 ~~~~~g~~~~~~ 87 (98)
T PTZ00051 76 KVFKNGSVVDTL 87 (98)
T ss_pred EEEeCCeEEEEE
Confidence 4577665443
No 70
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.77 E-value=1.5e-08 Score=58.43 Aligned_cols=54 Identities=24% Similarity=0.467 Sum_probs=38.4
Q ss_pred cEEEEEeCCChhhHHHHHHHh----hCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEE
Q 037432 18 AVVLFSISGCCMCTVAKRLLF----SLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKF 83 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~----~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~ 83 (111)
+|.+ ..++||+|..+.+.++ +++++++.+++.. .. ++ ..+|. .++|+++|||+.
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~---~~----~~-~~ygv---~~vPalvIng~~ 59 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIED---FE----EI-EKYGV---MSVPALVINGKV 59 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETTT---HH----HH-HHTT----SSSSEEEETTEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccC---HH----HH-HHcCC---CCCCEEEECCEE
Confidence 3566 5677999997776554 5577777777622 22 35 77898 999999999974
No 71
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.75 E-value=1.7e-07 Score=53.40 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=54.9
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhC-CCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSS-NGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g-~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
+.+|+.+.||+|++++-+|...|++|+.++++...... ++.+... . .++|.+..+|..+.....+.++.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~----~~~~~~p~~---~~vP~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSE----LLLASNPVH---KKIPVLLHNGKPICESLIIVEYID 71 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCH----HHHHhCCCC---CCCCEEEECCEEeehHHHHHHHHH
Confidence 36899999999999999999999999998876543222 3555554 4 799999999988888887777643
No 72
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.74 E-value=5.1e-08 Score=59.01 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=41.2
Q ss_pred HHHHhhcCCc--EEEEEeCCChhhHHHHHHH-------hhC--CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE
Q 037432 9 IVTHLASSNA--VVLFSISGCCMCTVAKRLL-------FSL--GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI 77 (111)
Q Consensus 9 ~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l-------~~~--~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v 77 (111)
.+.++++.++ ++.|+.+|||+|+.....+ +.+ ++.+-.+|++.++... .++...++. .++|++
T Consensus 3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~~~~~~i---~~~Pti 76 (104)
T cd02953 3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEI---TALLKRFGV---FGPPTY 76 (104)
T ss_pred HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHH---HHHHHHcCC---CCCCEE
Confidence 4555555555 5568899999999887654 112 3444455655443322 357788898 999987
Q ss_pred E
Q 037432 78 F 78 (111)
Q Consensus 78 f 78 (111)
+
T Consensus 77 ~ 77 (104)
T cd02953 77 L 77 (104)
T ss_pred E
Confidence 4
No 73
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.74 E-value=1.1e-07 Score=56.86 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=54.2
Q ss_pred CCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 25 SGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 25 ~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
..||||++++-.|.++|++|+.++++...... .+.+.+.. ..+|++..+|..+...+.|.++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~----~~~~~nP~---g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPE----DLKDLAPG---TQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCH----HHHHhCCC---CCCCEEEECCEEecCHHHHHHHHH
Confidence 46999999999999999999999888654433 47788887 899999999999999988888754
No 74
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.73 E-value=8.6e-08 Score=59.10 Aligned_cols=63 Identities=17% Similarity=0.293 Sum_probs=44.7
Q ss_pred EEEEEeCCChhhHHHHHHHhhC-----CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEEeccHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL-----GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFLGGIETLM 91 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~-----~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~igg~~~~~ 91 (111)
++.|+.+||+.|+.+.+.|+++ ++.+-.+|++.. .+.+.++. .++|++ |-+|+.++...-..
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--------~l~~~~~i---~~~Pt~~~f~~G~~v~~~~G~~ 96 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--------FLVNYLDI---KVLPTLLVYKNGELIDNIVGFE 96 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--------HHHHhcCC---CcCCEEEEEECCEEEEEEecHH
Confidence 4558899999999999988764 344444555433 27778898 899987 67998876554333
Q ss_pred H
Q 037432 92 A 92 (111)
Q Consensus 92 ~ 92 (111)
.
T Consensus 97 ~ 97 (113)
T cd02957 97 E 97 (113)
T ss_pred H
Confidence 3
No 75
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.73 E-value=5e-08 Score=60.52 Aligned_cols=42 Identities=17% Similarity=0.292 Sum_probs=35.6
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcc-hHHHH
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVA-GREIQ 59 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~-~~~~~ 59 (111)
.|++|+.+.|+.|++++++|+++|++|+++|+-..+- ..++.
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~ 43 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLR 43 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHH
Confidence 3789999999999999999999999999999976554 44433
No 76
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.4e-08 Score=69.88 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=50.4
Q ss_pred cCCc-EEEEEeCCChhhHHHHHHHhhC----C--CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEEe
Q 037432 15 SSNA-VVLFSISGCCMCTVAKRLLFSL----G--VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFLG 85 (111)
Q Consensus 15 ~~~~-vvif~~~~Cp~C~~~~~~l~~~----~--v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~ig 85 (111)
...+ +|.|+.|||+.|+...+.|..+ + +..-.+|+|.++. +....|. .++|+| |++|++|-
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~-------vAaqfgi---qsIPtV~af~dGqpVd 111 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM-------VAAQFGV---QSIPTVYAFKDGQPVD 111 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh-------HHHHhCc---CcCCeEEEeeCCcCcc
Confidence 3435 5558899999999999999876 2 3345667777765 8888998 999998 89999998
Q ss_pred ccH
Q 037432 86 GIE 88 (111)
Q Consensus 86 g~~ 88 (111)
||.
T Consensus 112 gF~ 114 (304)
T COG3118 112 GFQ 114 (304)
T ss_pred ccC
Confidence 884
No 77
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.72 E-value=1.3e-07 Score=57.37 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=42.2
Q ss_pred EEEEEeCCChhhHHHHHHHhhC-----CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEEe
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL-----GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFLG 85 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~-----~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~ig 85 (111)
++.|+.+||+.|+...+.|.++ ++.+-.+|+|.++... .+...++. ..+|++ |-+|+.++
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~----~l~~~~~V---~~~Pt~~~~~~G~~v~ 85 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTM----ELCRREKI---IEVPHFLFYKDGEKIH 85 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHH----HHHHHcCC---CcCCEEEEEeCCeEEE
Confidence 4558899999999998888764 3445556666543222 47778888 899987 45887553
No 78
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.72 E-value=4.8e-08 Score=58.72 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=45.1
Q ss_pred HHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhC-------CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE-
Q 037432 8 EIVTHLASSNAVVLFSISGCCMCTVAKRLLFSL-------GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV- 79 (111)
Q Consensus 8 ~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~-------~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi- 79 (111)
+.++++++...++.|+.+|||+|+.+.+.+.++ ++.+-.+|.+..+ .+...++. .++|++++
T Consensus 9 ~~f~~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~-------~~~~~~~i---~~~Pt~~~~ 78 (101)
T cd02994 9 SNWTLVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP-------GLSGRFFV---TALPTIYHA 78 (101)
T ss_pred hhHHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH-------hHHHHcCC---cccCEEEEe
Confidence 345556666668889999999999999888754 2333445554432 36677888 99999854
Q ss_pred -CCE
Q 037432 80 -GGK 82 (111)
Q Consensus 80 -~g~ 82 (111)
+|+
T Consensus 79 ~~g~ 82 (101)
T cd02994 79 KDGV 82 (101)
T ss_pred CCCC
Confidence 554
No 79
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.72 E-value=7.9e-08 Score=58.23 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=44.7
Q ss_pred HHHHHHHhhcCCc--EEEEEeCCChhhHHHHHHHhhC----C---CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccE
Q 037432 6 TYEIVTHLASSNA--VVLFSISGCCMCTVAKRLLFSL----G---VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPA 76 (111)
Q Consensus 6 ~~~~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~----~---v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~ 76 (111)
+.+.++++++.++ ++.|+.+|||+|+...+.|.+. + +.+..+|+| . . .+.+.++. ..+|+
T Consensus 6 ~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d---~-~----~~~~~~~v---~~~Pt 74 (102)
T cd02948 6 NQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD---T-I----DTLKRYRG---KCEPT 74 (102)
T ss_pred CHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC---C-H----HHHHHcCC---CcCcE
Confidence 4455666665555 4568899999999988888654 2 223344444 2 1 36677888 89997
Q ss_pred E--EECCEEE
Q 037432 77 I--FVGGKFL 84 (111)
Q Consensus 77 v--fi~g~~i 84 (111)
+ |-+|+.+
T Consensus 75 ~~~~~~g~~~ 84 (102)
T cd02948 75 FLFYKNGELV 84 (102)
T ss_pred EEEEECCEEE
Confidence 6 5677643
No 80
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.72 E-value=8.7e-08 Score=57.42 Aligned_cols=58 Identities=17% Similarity=0.354 Sum_probs=41.4
Q ss_pred EEEEEeCCChhhHHHHHHHhhC------CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEEec
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL------GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFLGG 86 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~------~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~igg 86 (111)
++.|+.+|||.|+.+.+.+++. ++.+..+|++.++ ++....+. .++|++ |-+|+.++.
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~-------~l~~~~~v---~~vPt~~i~~~g~~v~~ 82 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ-------EIAEAAGI---MGTPTVQFFKDKELVKE 82 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH-------HHHHHCCC---eeccEEEEEECCeEEEE
Confidence 4568889999999999888762 3445556665443 36777888 999987 457776533
No 81
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.71 E-value=1.6e-07 Score=53.27 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=48.4
Q ss_pred CCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 25 SGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 25 ~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
+.||+|.+++.+|+..|++|+.++++... .+.. ..+|++..+|+.+.++..+.++.+
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----------~~p~---g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW-----------RSPT---GKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc-----------cCCC---cccCEEEECCEEEcCHHHHHHHHh
Confidence 48999999999999999999999887532 3445 799999999999999988887654
No 82
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.71 E-value=2.1e-07 Score=53.26 Aligned_cols=71 Identities=10% Similarity=0.216 Sum_probs=56.9
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMAC 93 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~ 93 (111)
+++|..+.||+|++++-.|.++|++|+.+.++...... ..+++.+.+.. .++|++..||..+.....|..+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~-~~~~~~~inP~---g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEH-NEPWFMRLNPT---GEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCcc-CCHHHHHhCcC---CCCCEEEECCEEEEcHHHHHHH
Confidence 46899999999999999999999999998886532110 01358888888 9999999999988888877665
No 83
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.71 E-value=2.2e-07 Score=53.06 Aligned_cols=73 Identities=14% Similarity=0.039 Sum_probs=58.1
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
+++|+.+.||+|++++-+|...|++|+.+.++..... ...+++.+.+.. .++|.+..+|..+.....+.++..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~P~---~~vP~l~~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGE-HKSPEHLARNPF---GQIPALEDGDLKLFESRAITRYLA 74 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccc-cCCHHHHhhCCC---CCCCEEEECCEEEEcHHHHHHHHh
Confidence 5789999999999999999999999998887753211 011357777887 999999999998888888877653
No 84
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.71 E-value=1.1e-07 Score=54.95 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=42.6
Q ss_pred EEEEEeCCChhhHHHHHHHhh-----CCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE--CCEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFS-----LGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV--GGKFL 84 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~-----~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi--~g~~i 84 (111)
+++|+++||++|+.+.+.+++ .++.+..+|.+..+. +...++. ..+|++++ +|+.+
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~v---~~~P~~~~~~~g~~~ 76 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPE-------LAEEYGV---RSIPTFLFFKNGKEV 76 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChh-------HHHhcCc---ccccEEEEEECCEEE
Confidence 677889999999999999987 456666677765433 6667788 89999755 77744
No 85
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.70 E-value=6.5e-08 Score=57.75 Aligned_cols=59 Identities=27% Similarity=0.341 Sum_probs=41.4
Q ss_pred EEEEEeCCChhhHHHHHHHhhC----CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEEe
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL----GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFLG 85 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~----~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~ig 85 (111)
++.|+++|||+|+.+++.|.+. +-.+....+|.... ..+.+.++. ..+|++ |-+|+.+.
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----~~l~~~~~v---~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-----KELCKKYGV---KSVPTIIFFKNGKEVK 85 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-----HHHHHHTTC---SSSSEEEEEETTEEEE
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhhcc-----chhhhccCC---CCCCEEEEEECCcEEE
Confidence 5668899999999999888654 32444444444333 248888898 999998 56776654
No 86
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.68 E-value=1.3e-07 Score=58.64 Aligned_cols=59 Identities=19% Similarity=0.319 Sum_probs=43.8
Q ss_pred CCcEEE-EEeCCChhhHHHHHHHhhCC------CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEE
Q 037432 16 SNAVVL-FSISGCCMCTVAKRLLFSLG------VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFL 84 (111)
Q Consensus 16 ~~~vvi-f~~~~Cp~C~~~~~~l~~~~------v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~i 84 (111)
...|++ |+++|||.|+.+.++|.++. +.+-.+|+|+.++ +.+.++. ...|++ |-+|+++
T Consensus 14 ~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d-------va~~y~I---~amPtfvffkngkh~ 81 (114)
T cd02986 14 EKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV-------YTQYFDI---SYIPSTIFFFNGQHM 81 (114)
T ss_pred CCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH-------HHHhcCc---eeCcEEEEEECCcEE
Confidence 334444 99999999999999998873 3345567776655 7788887 677775 6788875
No 87
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.67 E-value=2.5e-07 Score=52.49 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=53.7
Q ss_pred EEEEeCCChhhHHHHHHHhh--CCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE-CCEEEeccHHHHHH
Q 037432 20 VLFSISGCCMCTVAKRLLFS--LGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV-GGKFLGGIETLMAC 93 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~--~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi-~g~~igg~~~~~~~ 93 (111)
.+|+.+.||+|.+++-.|.. .+++|+.+.++...... ++....+. .++|.+.. ||..+.....+.++
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~----~~~~~~p~---~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDE----SLLAVNPL---GKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCCh----HHHHhCCC---CCCCEEEECCCCEEECHHHHHhh
Confidence 68999999999999999999 89999999887533222 46667777 89999975 77888887777654
No 88
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.65 E-value=7.5e-08 Score=59.50 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=44.0
Q ss_pred EEEEEeCC--ChhhHHHHHHHhhCCC------CcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEEecc
Q 037432 19 VVLFSISG--CCMCTVAKRLLFSLGV------GPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFLGGI 87 (111)
Q Consensus 19 vvif~~~~--Cp~C~~~~~~l~~~~v------~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~igg~ 87 (111)
|+.|+.+| ||.|+.+.++|.++.- .+-.+|++..+ ++...++. .++|++ |-||+.++..
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-------~la~~f~V---~sIPTli~fkdGk~v~~~ 99 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-------ALAARFGV---LRTPALLFFRDGRYVGVL 99 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-------HHHHHcCC---CcCCEEEEEECCEEEEEE
Confidence 66688885 9999999999977532 23345555543 38889999 999997 6799887655
No 89
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.64 E-value=1.2e-07 Score=57.08 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=43.6
Q ss_pred HHHHhhcCCc--EEEEEeCCChhhHHHHHHHhhCC------CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--E
Q 037432 9 IVTHLASSNA--VVLFSISGCCMCTVAKRLLFSLG------VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--F 78 (111)
Q Consensus 9 ~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~~------v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--f 78 (111)
.+++.+...+ ++.|+++|||+|+.+.+.+.+.. +.+-.+|++..+ .+.+..+. ..+|++ |
T Consensus 10 ~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~-------~~~~~~~v---~~~Pt~~~~ 79 (101)
T cd03003 10 DFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR-------MLCRSQGV---NSYPSLYVF 79 (101)
T ss_pred hHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH-------HHHHHcCC---CccCEEEEE
Confidence 4445554444 55688999999999998887652 234455665442 36677788 899998 4
Q ss_pred ECCEE
Q 037432 79 VGGKF 83 (111)
Q Consensus 79 i~g~~ 83 (111)
-+|+.
T Consensus 80 ~~g~~ 84 (101)
T cd03003 80 PSGMN 84 (101)
T ss_pred cCCCC
Confidence 56653
No 90
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.62 E-value=2.2e-07 Score=55.21 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=40.0
Q ss_pred EEEEEeCCChhhHHHHHHHhhC----CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL----GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFL 84 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~----~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~i 84 (111)
++.|+.+||+.|+++.+.|+++ ...+..+.+|.... .++...++. ..+|++ |.+|+.+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~-----~~~~~~~~i---~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL-----PEISEKFEI---TAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC-----HHHHHhcCC---ccccEEEEEECCEEE
Confidence 5568899999999999888764 22344444544333 237777888 899986 5677754
No 91
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.61 E-value=2.1e-07 Score=63.52 Aligned_cols=64 Identities=23% Similarity=0.341 Sum_probs=45.8
Q ss_pred hhcCCcEEEEEe---CCChhhHHHHHHHhhCC-----CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE--CCE
Q 037432 13 LASSNAVVLFSI---SGCCMCTVAKRLLFSLG-----VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV--GGK 82 (111)
Q Consensus 13 ~~~~~~vvif~~---~~Cp~C~~~~~~l~~~~-----v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi--~g~ 82 (111)
+.+...+++|+. +|||+|+.+.+++++.. +.+..+++|.+.. ..+.+.++. .++|++.+ ||+
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~-----~~l~~~~~V---~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED-----KEEAEKYGV---ERVPTTIILEEGK 88 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc-----HHHHHHcCC---CccCEEEEEeCCe
Confidence 334445778888 99999999999997762 3445667765443 248888998 99999854 654
Q ss_pred EE
Q 037432 83 FL 84 (111)
Q Consensus 83 ~i 84 (111)
.+
T Consensus 89 ~~ 90 (215)
T TIGR02187 89 DG 90 (215)
T ss_pred ee
Confidence 43
No 92
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.59 E-value=1.9e-07 Score=56.87 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=43.2
Q ss_pred HHHHhhcCCc--EEEEEeCCChhhHHHHHHHhhC------------CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcc
Q 037432 9 IVTHLASSNA--VVLFSISGCCMCTVAKRLLFSL------------GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTV 74 (111)
Q Consensus 9 ~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~------------~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~v 74 (111)
.+++.++.++ ++.|+.+||++|++..+.+++. .+.+-.+|.+..+ .+...+|. .++
T Consensus 10 ~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~-------~l~~~~~v---~~~ 79 (108)
T cd02996 10 NIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES-------DIADRYRI---NKY 79 (108)
T ss_pred hHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH-------HHHHhCCC---CcC
Confidence 4445555555 5568899999999999888643 1333445555442 37788898 999
Q ss_pred cEE--EECCE
Q 037432 75 PAI--FVGGK 82 (111)
Q Consensus 75 P~v--fi~g~ 82 (111)
|++ |-+|+
T Consensus 80 Ptl~~~~~g~ 89 (108)
T cd02996 80 PTLKLFRNGM 89 (108)
T ss_pred CEEEEEeCCc
Confidence 997 55665
No 93
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.59 E-value=2.7e-07 Score=60.01 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=41.4
Q ss_pred EEEEEeCCChhhHHHHHHHhhC-------CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCc------ccEE--EECCEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL-------GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQT------VPAI--FVGGKF 83 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~-------~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~------vP~v--fi~g~~ 83 (111)
++.|+++|||.|+.+.+.+.+. ++.+-.+|++.+++ +.+.++. .+ +|++ |.+|+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~-------la~~~~V---~~~~~v~~~PT~ilf~~Gk~ 120 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN-------VAEKFRV---STSPLSKQLPTIILFQGGKE 120 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH-------HHHHcCc---eecCCcCCCCEEEEEECCEE
Confidence 6678999999999999888654 24455566666543 5556666 44 8986 779987
Q ss_pred Eecc
Q 037432 84 LGGI 87 (111)
Q Consensus 84 igg~ 87 (111)
++..
T Consensus 121 v~r~ 124 (152)
T cd02962 121 VARR 124 (152)
T ss_pred EEEE
Confidence 6433
No 94
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.58 E-value=5.7e-07 Score=53.34 Aligned_cols=56 Identities=20% Similarity=0.301 Sum_probs=38.8
Q ss_pred EEEEEeCCChhhHHHHHHHhhC----C--CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE--CCEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL----G--VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV--GGKFL 84 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~----~--v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi--~g~~i 84 (111)
++.|+.+||++|+.+.+.|.+. + +.+-.+|.+..+ .+...+|. .++|++++ +|+.+
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-------~~~~~~~v---~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP-------DIAAKYGI---RSIPTLLLFKNGKEV 81 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH-------HHHHHcCC---CcCCEEEEEeCCcEe
Confidence 5557799999999888777654 2 444445554432 36677898 99999855 77654
No 95
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.57 E-value=4e-07 Score=55.11 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=35.4
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCC---cEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVG---PTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF 78 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~---~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf 78 (111)
++.|+.+|||+|+...+.|+++.-. ...+.+|.+.... .+...++. ..+|+++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~V---~~~PT~~ 77 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYGV---VGFPTIL 77 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcCC---eecCEEE
Confidence 5568899999999999888765211 2233444331111 47788898 9999874
No 96
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.56 E-value=4.1e-07 Score=55.93 Aligned_cols=56 Identities=23% Similarity=0.404 Sum_probs=39.6
Q ss_pred EEEEEeCCChhhHHHHHHHhhC-------CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL-------GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFL 84 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~-------~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~i 84 (111)
++.|+++|||.|+...+.+.++ ++.+-.+|++..+ .+....|. .++|++ |.+|+.+
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~-------~l~~~~~V---~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER-------RLARKLGA---HSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH-------HHHHHcCC---ccCCEEEEEECCEEE
Confidence 5568899999999888777543 3444555555432 36777898 999987 4788765
No 97
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.55 E-value=3.6e-07 Score=60.70 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=48.9
Q ss_pred EEEEEeCCChhhHHHHHHHhhC-----CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEEecc---H
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL-----GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFLGGI---E 88 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~-----~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~igg~---~ 88 (111)
|+-|+.+|||.|+.+.+.|.++ .+.|-.+|++.. .+...++. .++|++ |.+|+.++.+ +
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--------~l~~~f~v---~~vPTlllyk~G~~v~~~vG~~ 155 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--------GASDEFDT---DALPALLVYKGGELIGNFVRVT 155 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--------hhHHhCCC---CCCCEEEEEECCEEEEEEechH
Confidence 3448899999999988888765 234444455432 27777888 999987 6799876433 3
Q ss_pred HHH-HHHHcCChHHHHHhcC
Q 037432 89 TLM-ACHINGTLVPLLKDAG 107 (111)
Q Consensus 89 ~~~-~~~~~g~L~~~l~~~g 107 (111)
+.. .-.....|+.+|...|
T Consensus 156 ~~~g~~f~~~~le~~L~~~g 175 (175)
T cd02987 156 EDLGEDFDAEDLESFLVEYG 175 (175)
T ss_pred HhcCCCCCHHHHHHHHHhcC
Confidence 321 1122335666665543
No 98
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=7.6e-07 Score=54.64 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=43.7
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCC-----cEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCE----EEecc
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVG-----PTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGK----FLGGI 87 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~-----~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~----~igg~ 87 (111)
|+-|+++||+.|+.+.+.+.++..+ |-.+|+|+ . ..+....+. ..+|++ +.+|+ ++|+.
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde---~----~~~~~~~~V---~~~PTf~f~k~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE---L----EEVAKEFNV---KAMPTFVFYKGGEEVDEVVGAN 94 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc---C----HhHHHhcCc---eEeeEEEEEECCEEEEEEecCC
Confidence 3348899999999999999887444 34567776 2 247888898 999997 45664 45554
Q ss_pred H
Q 037432 88 E 88 (111)
Q Consensus 88 ~ 88 (111)
.
T Consensus 95 ~ 95 (106)
T KOG0907|consen 95 K 95 (106)
T ss_pred H
Confidence 4
No 99
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=98.54 E-value=1.5e-06 Score=49.45 Aligned_cols=70 Identities=14% Similarity=0.000 Sum_probs=56.5
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHH
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACH 94 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~ 94 (111)
++++|..+.|+.|++++-+|.+.|++|+.+.++.. ...+++...+.. .++|++..||..+.....+..+.
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~----~~~~~~~~~~p~---~~vP~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE----EWQESLKPKMLF---GQLPCFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH----HhhhhhhccCCC---CCCCEEEECCEEEEcHHHHHHHH
Confidence 36788889999999999999999999999888642 112246666666 89999999999999888877764
No 100
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.54 E-value=3.2e-07 Score=55.36 Aligned_cols=53 Identities=23% Similarity=0.239 Sum_probs=37.5
Q ss_pred EEEEEeCCChhhHHHHHHHhhC------CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL------GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGG 81 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~------~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g 81 (111)
++.|+++||++|+++.+.+.+. .+.+-.+|.+..+ .+.+.+|. ..+|++ |-+|
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-------~~~~~~~i---~~~Pt~~~~~~g 83 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE-------SLCQQANI---RAYPTIRLYPGN 83 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH-------HHHHHcCC---CcccEEEEEcCC
Confidence 5568899999999988888654 2344455555432 36777898 999997 4465
No 101
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.52 E-value=7.9e-07 Score=50.16 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=54.9
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHH
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMAC 93 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~ 93 (111)
++|+.+.||.|.+++.+|...|++|+.+.++..+... ..+++.+.+.. .++|++..+|..+.....+..+
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~-~~~~~~~~~p~---~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQ-LSPAYRALNPQ---GLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCc-CChHHHHhCCC---CCCCEEEECCEEEEcHHHHHHH
Confidence 6888899999999999999999999988887532110 11346777777 8999999999988887777664
No 102
>PRK10996 thioredoxin 2; Provisional
Probab=98.52 E-value=6.3e-07 Score=57.30 Aligned_cols=69 Identities=17% Similarity=0.271 Sum_probs=45.1
Q ss_pred HHHHHhhcCCc--EEEEEeCCChhhHHHHHHHhhC----CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EE
Q 037432 8 EIVTHLASSNA--VVLFSISGCCMCTVAKRLLFSL----GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FV 79 (111)
Q Consensus 8 ~~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~----~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi 79 (111)
+.++++++..+ ++.|+.+|||+|+...+.|.+. +-.+..+.+|.+.. ..+...++. .++|++ |-
T Consensus 43 ~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-----~~l~~~~~V---~~~Ptlii~~ 114 (139)
T PRK10996 43 ETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE-----RELSARFRI---RSIPTIMIFK 114 (139)
T ss_pred HHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC-----HHHHHhcCC---CccCEEEEEE
Confidence 45555555444 5568899999999988887654 32344444443333 237778898 999987 45
Q ss_pred CCEEE
Q 037432 80 GGKFL 84 (111)
Q Consensus 80 ~g~~i 84 (111)
+|+.+
T Consensus 115 ~G~~v 119 (139)
T PRK10996 115 NGQVV 119 (139)
T ss_pred CCEEE
Confidence 88755
No 103
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.52 E-value=5.2e-07 Score=55.94 Aligned_cols=59 Identities=8% Similarity=0.030 Sum_probs=40.8
Q ss_pred hcCCc--EEEEEeCCChhhHHHHHHHhhCC------CCcEEEEccCCcchHHHHHHHH-HHhCCCCCCcccEE--EECCE
Q 037432 14 ASSNA--VVLFSISGCCMCTVAKRLLFSLG------VGPTIVELDHHVAGREIQAVLF-QLSSNGQHQTVPAI--FVGGK 82 (111)
Q Consensus 14 ~~~~~--vvif~~~~Cp~C~~~~~~l~~~~------v~~~~i~v~~~~~~~~~~~~l~-~~~g~~~~~~vP~v--fi~g~ 82 (111)
++.++ ++.|+.+||++|+.+.+.+++.. +.+-.+|++.+++ +. ..++. .++|++ |.+|+
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~-------l~~~~~~I---~~~PTl~lf~~g~ 95 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG-------KCRKQKHF---FYFPVIHLYYRSR 95 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH-------HHHHhcCC---cccCEEEEEECCc
Confidence 44454 55699999999999999888763 3334455554433 44 46787 889987 66775
No 104
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=98.51 E-value=4.9e-07 Score=56.39 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=41.2
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhC
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSS 67 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g 67 (111)
.|++|..|.|..|++|++||+++|++|.++|+...+-.++....+.+.+|
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 38999999999999999999999999999999776655554445555555
No 105
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.51 E-value=9e-07 Score=56.85 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=43.7
Q ss_pred HHHhhcCCc--EEEEEeCCChhhHHHHHHHhhC------CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE-E-
Q 037432 10 VTHLASSNA--VVLFSISGCCMCTVAKRLLFSL------GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF-V- 79 (111)
Q Consensus 10 ~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~------~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf-i- 79 (111)
+++.+...+ |+.|+.+||++|+...+.|.++ .+.+..++++.... ..+...++. ..+|+++ +
T Consensus 13 ~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~-----~~~~~~~~V---~~iPt~v~~~ 84 (142)
T cd02950 13 PEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKW-----LPEIDRYRV---DGIPHFVFLD 84 (142)
T ss_pred HHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCccc-----HHHHHHcCC---CCCCEEEEEC
Confidence 444444444 4558899999999988888654 23455566664322 136677888 9999874 5
Q ss_pred -CCEEE
Q 037432 80 -GGKFL 84 (111)
Q Consensus 80 -~g~~i 84 (111)
+|+.+
T Consensus 85 ~~G~~v 90 (142)
T cd02950 85 REGNEE 90 (142)
T ss_pred CCCCEE
Confidence 47654
No 106
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.50 E-value=5.9e-07 Score=57.79 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=45.9
Q ss_pred hhHHHHHHHhhc--CCc-E-EEEEeCCChhhHHHHHHHhhCC------CCcEEEEccCCcchHHHHHHHHHHhCCCCCC-
Q 037432 4 EKTYEIVTHLAS--SNA-V-VLFSISGCCMCTVAKRLLFSLG------VGPTIVELDHHVAGREIQAVLFQLSSNGQHQ- 72 (111)
Q Consensus 4 ~~~~~~~~~~~~--~~~-v-vif~~~~Cp~C~~~~~~l~~~~------v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~- 72 (111)
..+.+.+.+.+. ..+ | +-|+++|||.|+.+.++|.+.. +.+-.+|+|+.++ +...++. .
T Consensus 8 l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d-------la~~y~I---~~ 77 (142)
T PLN00410 8 LHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD-------FNTMYEL---YD 77 (142)
T ss_pred hCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH-------HHHHcCc---cC
Confidence 345566666653 233 3 3499999999999999998763 2335567776654 8888888 6
Q ss_pred cccEE-E-ECCE
Q 037432 73 TVPAI-F-VGGK 82 (111)
Q Consensus 73 ~vP~v-f-i~g~ 82 (111)
..|++ | -+|+
T Consensus 78 ~~t~~~ffk~g~ 89 (142)
T PLN00410 78 PCTVMFFFRNKH 89 (142)
T ss_pred CCcEEEEEECCe
Confidence 44555 3 4665
No 107
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.49 E-value=1e-06 Score=54.89 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=44.7
Q ss_pred HHHHHHHhhcCCc--EEEEEeCCChhhHHHHHHHhhC------CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE
Q 037432 6 TYEIVTHLASSNA--VVLFSISGCCMCTVAKRLLFSL------GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI 77 (111)
Q Consensus 6 ~~~~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~------~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v 77 (111)
..+.++.+...++ ++.|+++||++|+...+.+.+. ...+..++++.+++. ..+.++.. ...+|++
T Consensus 8 ~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~------~~~~~~~~-g~~vPt~ 80 (117)
T cd02959 8 LEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEP------KDEEFSPD-GGYIPRI 80 (117)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCc------hhhhcccC-CCccceE
Confidence 3455555555444 4458899999999998888763 345677788765442 22233430 0248987
Q ss_pred -EE--CCEEEe
Q 037432 78 -FV--GGKFLG 85 (111)
Q Consensus 78 -fi--~g~~ig 85 (111)
|+ +|+.++
T Consensus 81 ~f~~~~Gk~~~ 91 (117)
T cd02959 81 LFLDPSGDVHP 91 (117)
T ss_pred EEECCCCCCch
Confidence 45 566544
No 108
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=98.48 E-value=5.2e-07 Score=55.98 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=38.7
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSS 67 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g 67 (111)
|++|+.++|+-|++++++|++.|++|.++|+-..+-..+....+.+..|
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKLG 49 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHcC
Confidence 5799999999999999999999999999999766554443334444444
No 109
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=98.48 E-value=5.5e-07 Score=55.68 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=39.3
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSS 67 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g 67 (111)
|++|+.+.|+-|+++.++|++.+++|.++|+-+.+-..+....+.+.+|
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~ 49 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKLG 49 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHcC
Confidence 5799999999999999999999999999999766654443344555555
No 110
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.47 E-value=8.6e-07 Score=52.66 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=39.6
Q ss_pred EEEEEeCCChhhHHHHHHHhhC----CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL----GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFL 84 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~----~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~i 84 (111)
++.|+.+||++|+...+.+.+. +-.+....++-+.. ..+...++. .++|++ |-+|+.+
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~l~~~~~i---~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ-----PQIAQQFGV---QALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC-----HHHHHHcCC---CCCCEEEEEeCCEEe
Confidence 5568899999999998888754 22333344443333 237778898 999998 4677654
No 111
>PRK10026 arsenate reductase; Provisional
Probab=98.47 E-value=7.2e-07 Score=57.32 Aligned_cols=50 Identities=14% Similarity=0.243 Sum_probs=39.3
Q ss_pred CcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCc-chHHHHHHHHHHhC
Q 037432 17 NAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHV-AGREIQAVLFQLSS 67 (111)
Q Consensus 17 ~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~-~~~~~~~~l~~~~g 67 (111)
..+++|+.+.|.-|+++++||+++|++|+++|+-..+ ...+++ .+.+.+|
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~-~~l~~~g 52 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELV-KLIADMG 52 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHH-HHHHhCC
Confidence 4689999999999999999999999999999996655 444443 3333444
No 112
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.47 E-value=3.4e-07 Score=57.27 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=43.0
Q ss_pred HHHHHHHhhcC---Cc-EEEEEe-------CCChhhHHHHHHHhhC----C--CCcEEEEccCCcchHHHHHHHHHHhCC
Q 037432 6 TYEIVTHLASS---NA-VVLFSI-------SGCCMCTVAKRLLFSL----G--VGPTIVELDHHVAGREIQAVLFQLSSN 68 (111)
Q Consensus 6 ~~~~~~~~~~~---~~-vvif~~-------~~Cp~C~~~~~~l~~~----~--v~~~~i~v~~~~~~~~~~~~l~~~~g~ 68 (111)
..+.+.+.+.. .+ ++.|+. +|||.|+.+.+.|++. . +.+-.+|++..+.-.+....++...+.
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I 87 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL 87 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc
Confidence 34444554442 34 555888 8999999888777543 3 556667776643111111247777777
Q ss_pred CCCC-cccEEE
Q 037432 69 GQHQ-TVPAIF 78 (111)
Q Consensus 69 ~~~~-~vP~vf 78 (111)
. .+|+++
T Consensus 88 ---~~~iPT~~ 95 (119)
T cd02952 88 ---TTGVPTLL 95 (119)
T ss_pred ---ccCCCEEE
Confidence 7 899984
No 113
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.46 E-value=9.8e-07 Score=62.28 Aligned_cols=68 Identities=19% Similarity=0.384 Sum_probs=55.2
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHH
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACH 94 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~ 94 (111)
.+++|....||+|-+++.+|+-++++|..++|+.... . +++ .+.. ..||.+.++|+......-|+.+.
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r--~---eIk-~Ssy---kKVPil~~~Geqm~dSsvIIs~l 157 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLR--Q---EIK-WSSY---KKVPILLIRGEQMVDSSVIISLL 157 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhh--h---hcc-cccc---ccccEEEeccceechhHHHHHHH
Confidence 6999999999999999999999999999999985422 1 232 3344 89999999999887777776653
No 114
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=98.46 E-value=1.1e-06 Score=59.69 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=55.1
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE-ECCEEEeccHHHHHHHHc
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF-VGGKFLGGIETLMACHIN 96 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf-i~g~~igg~~~~~~~~~~ 96 (111)
++|..+.||+|++++-+|..+|++|+.++++...... ..+.++. .++|++. .||..+.+...|.++..+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~-----~~~~np~---g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEET-----PIRMIGA---KQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchh-----HHHhcCC---CCcceEEeeCCeEeccHHHHHHHHHH
Confidence 3688899999999999999999999988875443211 2455666 8999997 788899999998887653
No 115
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.46 E-value=8.7e-07 Score=53.71 Aligned_cols=52 Identities=21% Similarity=0.180 Sum_probs=36.1
Q ss_pred EEEEEeCCChhhHHHHHHHhhC----C--CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL----G--VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF 78 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~----~--v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf 78 (111)
++.|+.+||++|++..+.+.+. + +.+-.+|++..+. ..+...++. ..+|+++
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~-----~~~~~~~~i---~~~Pt~~ 79 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN-----KPLCGKYGV---QGFPTLK 79 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcccc-----HHHHHHcCC---CcCCEEE
Confidence 6668899999999888877655 2 3334455554322 247777888 9999984
No 116
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=98.45 E-value=3.8e-07 Score=51.67 Aligned_cols=67 Identities=12% Similarity=0.092 Sum_probs=49.3
Q ss_pred CChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE-CCEEEeccHHHHHHHH
Q 037432 26 GCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV-GGKFLGGIETLMACHI 95 (111)
Q Consensus 26 ~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi-~g~~igg~~~~~~~~~ 95 (111)
.||+|+++.-+|..+|++++...+...+....-.+++.+.++. .+||.+.. +|..+.....|.++.+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~---~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR---GKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT----SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC---eEEEEEEECCCCEeeCHHHHHHHHh
Confidence 4999999999999999999876663321111000247888888 99999997 8999999988887654
No 117
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.45 E-value=4.3e-07 Score=54.98 Aligned_cols=64 Identities=13% Similarity=0.184 Sum_probs=40.2
Q ss_pred HHHHHhhcCCc-EEEEEeCCChhhHHHHHHHhhC-------CCCc--EEEEccCCcchHHHHHHHHHHhCCCCCCcccEE
Q 037432 8 EIVTHLASSNA-VVLFSISGCCMCTVAKRLLFSL-------GVGP--TIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI 77 (111)
Q Consensus 8 ~~~~~~~~~~~-vvif~~~~Cp~C~~~~~~l~~~-------~v~~--~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v 77 (111)
+.+++..+... ++.|+++|||+|++..+.|++. +..+ ..+|.+..+ .+.+.++. .++|++
T Consensus 7 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~-------~~~~~~~I---~~~Pt~ 76 (104)
T cd03000 7 DSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS-------SIASEFGV---RGYPTI 76 (104)
T ss_pred hhhhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH-------hHHhhcCC---ccccEE
Confidence 44555545444 4558899999999888777653 2223 334444332 36677888 999998
Q ss_pred -EECC
Q 037432 78 -FVGG 81 (111)
Q Consensus 78 -fi~g 81 (111)
+++|
T Consensus 77 ~l~~~ 81 (104)
T cd03000 77 KLLKG 81 (104)
T ss_pred EEEcC
Confidence 3444
No 118
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.44 E-value=1.3e-06 Score=54.43 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=43.0
Q ss_pred HHHHHhhcCC-c--EEEEEeCCChhhHHHHHHHhh-------C--CCCcEEEEccCCcchH------HHHHHHHHHhCCC
Q 037432 8 EIVTHLASSN-A--VVLFSISGCCMCTVAKRLLFS-------L--GVGPTIVELDHHVAGR------EIQAVLFQLSSNG 69 (111)
Q Consensus 8 ~~~~~~~~~~-~--vvif~~~~Cp~C~~~~~~l~~-------~--~v~~~~i~v~~~~~~~------~~~~~l~~~~g~~ 69 (111)
+.++++.+++ + ++.|+.+|||+|++..+.+.+ + ++.+..++++...... .-...+...++.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v- 82 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV- 82 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC-
Confidence 4556666666 4 556889999999988765521 1 3334455655432100 001257788898
Q ss_pred CCCcccEE-EECC
Q 037432 70 QHQTVPAI-FVGG 81 (111)
Q Consensus 70 ~~~~vP~v-fi~g 81 (111)
.++|++ |+++
T Consensus 83 --~~~Pt~~~~~~ 93 (125)
T cd02951 83 --RFTPTVIFLDP 93 (125)
T ss_pred --ccccEEEEEcC
Confidence 899996 5553
No 119
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=3.8e-07 Score=54.65 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=65.0
Q ss_pred CcEEEEEeCCChhhH------HHHHHHhhCCCCcEEEEccCCcchHH-----HHHHHHHHhCCCCCCcccEEEECCEEEe
Q 037432 17 NAVVLFSISGCCMCT------VAKRLLFSLGVGPTIVELDHHVAGRE-----IQAVLFQLSSNGQHQTVPAIFVGGKFLG 85 (111)
Q Consensus 17 ~~vvif~~~~Cp~C~------~~~~~l~~~~v~~~~i~v~~~~~~~~-----~~~~l~~~~g~~~~~~vP~vfi~g~~ig 85 (111)
..|.+|+++.-+.-. .+..+|+...+.++.+|+......+. +..+.+...|. ...|+||.++++.|
T Consensus 2 ~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~Gn---plPPqifn~d~Y~G 78 (108)
T KOG4023|consen 2 MVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGN---PLPPQIFNGDQYCG 78 (108)
T ss_pred CceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCC---CCCcccccCccccc
Confidence 356778866544432 56678888899999999876544322 22345556676 78999999999999
Q ss_pred ccHHHHHHHHcCChHHHHHh
Q 037432 86 GIETLMACHINGTLVPLLKD 105 (111)
Q Consensus 86 g~~~~~~~~~~g~L~~~l~~ 105 (111)
+++.+.+..+++.|.+.|+=
T Consensus 79 dye~F~ea~E~ntl~eFL~l 98 (108)
T KOG4023|consen 79 DYELFFEAVEQNTLQEFLGL 98 (108)
T ss_pred cHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999864
No 120
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=98.43 E-value=1e-06 Score=55.61 Aligned_cols=45 Identities=11% Similarity=0.271 Sum_probs=36.4
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCc-chHHHHHHH
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHV-AGREIQAVL 62 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~-~~~~~~~~l 62 (111)
.+++|+.++|.-|++++++|++.|++|+++|+-..+ ...++...+
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l 47 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYF 47 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHH
Confidence 478999999999999999999999999999986544 444443333
No 121
>PRK10853 putative reductase; Provisional
Probab=98.43 E-value=8.5e-07 Score=55.41 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=35.0
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCc-chHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHV-AGREIQ 59 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~-~~~~~~ 59 (111)
+++|+.++|..|++|+++|++.|++|+++|+-..+ ...++.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~ 43 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQ 43 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHH
Confidence 78999999999999999999999999999996655 444433
No 122
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.43 E-value=2.6e-06 Score=48.68 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=51.1
Q ss_pred EEEEEeC-------CChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHH
Q 037432 19 VVLFSIS-------GCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLM 91 (111)
Q Consensus 19 vvif~~~-------~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~ 91 (111)
+++|..+ .||+|.+++.+|...|++|+.++++.. ..+.. .++|.+..+|+.+.+...+.
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----------~~~p~---g~vPvl~~~g~~l~eS~~I~ 67 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----------KRSPK---GKLPFIELNGEKIADSELII 67 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----------cCCCC---CCCCEEEECCEEEcCHHHHH
Confidence 4677766 579999999999999999998877631 24455 89999999999999998887
Q ss_pred HHHH
Q 037432 92 ACHI 95 (111)
Q Consensus 92 ~~~~ 95 (111)
+...
T Consensus 68 ~yL~ 71 (75)
T cd03080 68 DHLE 71 (75)
T ss_pred HHHH
Confidence 7643
No 123
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.42 E-value=1.1e-06 Score=51.34 Aligned_cols=66 Identities=18% Similarity=0.097 Sum_probs=50.4
Q ss_pred CCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEEC-CEEEeccHHHHHHHH
Q 037432 25 SGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVG-GKFLGGIETLMACHI 95 (111)
Q Consensus 25 ~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~-g~~igg~~~~~~~~~ 95 (111)
++||+|.+++-+|...|++|+.+.++.... .....++ ...+. ..+|++..+ |..+.+...+.++..
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~-~~~~~~~-~~~p~---~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDI-PPILGEL-TSGGF---YTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCc-ccccccc-cCCCC---ceeCeEEECCCCEEeCHHHHHHHHH
Confidence 679999999999999999999888764322 1111234 45566 899999888 899999888888754
No 124
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=98.41 E-value=4.9e-06 Score=48.05 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=55.0
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEEC---CEEEeccHHHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVG---GKFLGGIETLMACHI 95 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~---g~~igg~~~~~~~~~ 95 (111)
+++|+.+. |+|++++-+|.+.|++|+.+.++..... ...+++.+.+.. .++|.+..+ |..+.....|..+..
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~-~~~~~~~~~~p~---~~vP~l~~~~~~g~~l~eS~aI~~yL~ 76 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGE-QKKPEFLKINPN---GRIPAIVDHNGTPLTVFESGAILLYLA 76 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCc-ccCHHHHHhCcC---CCCCEEEeCCCCceEEEcHHHHHHHHH
Confidence 57898876 9999999999999999998887743210 011346677777 899999887 788888887777643
No 125
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=98.39 E-value=3.8e-06 Score=56.87 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=58.4
Q ss_pred CcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHH
Q 037432 17 NAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACH 94 (111)
Q Consensus 17 ~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~ 94 (111)
..+++|+.+.||+|.+++-+|.+.|++|+.+.++..... +++...+.. .+||++..||..+-....|..+.
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~----~~~~~~nP~---g~VPvL~~~g~~l~ES~AIl~YL 79 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLP----QDLIDLNPY---QSVPTLVDRELTLYESRIIMEYL 79 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCC----HHHHHhCCC---CCCCEEEECCEEeeCHHHHHHHH
Confidence 348899999999999999999999999999988753222 247777777 89999999998888877777654
No 126
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=98.39 E-value=3e-06 Score=47.91 Aligned_cols=69 Identities=16% Similarity=0.014 Sum_probs=54.5
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHH
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACH 94 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~ 94 (111)
++|..+.|+.|.+++-+|.+.|++|+.+.++...... ..+...+.. .++|.+..+|..+.....+..+.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~---~~~~~~~p~---~~vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPE---LDLKPTLPF---GQLPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhh---hhhccCCcC---CCCCEEEECCEEEEecHHHHHHh
Confidence 6888899999999999999999999998886432111 125556666 89999999999888888777653
No 127
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.39 E-value=1.2e-06 Score=46.61 Aligned_cols=56 Identities=27% Similarity=0.369 Sum_probs=41.5
Q ss_pred EEEEEeCCChhhHHHHHHHh-----hCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECC
Q 037432 19 VVLFSISGCCMCTVAKRLLF-----SLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGG 81 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~-----~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g 81 (111)
+++|..++||+|.++...+. ..++.+..++++....... .....+. .++|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEK----ELKRYGV---GGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhh----HHHhCCC---ccccEEEEEe
Confidence 46788999999999999999 4567777777776655332 1234566 8999997765
No 128
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.39 E-value=1.6e-06 Score=51.94 Aligned_cols=50 Identities=24% Similarity=0.162 Sum_probs=34.6
Q ss_pred EEEEEeCCChhhHHHHHHHhhC------CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL------GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF 78 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~------~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf 78 (111)
++.|+.+||++|++..+.|.+. .+.+-.+|.+..+ .+....+. ..+|+++
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~-------~~~~~~~i---~~~P~~~ 77 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ-------SLAQQYGV---RGFPTIK 77 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH-------HHHHHCCC---CccCEEE
Confidence 5568899999999998877664 2333444444332 36677788 8999873
No 129
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.38 E-value=1.9e-06 Score=52.50 Aligned_cols=69 Identities=25% Similarity=0.312 Sum_probs=38.4
Q ss_pred cEEEEEeCCChhhHHHHHHHhhC---------CCCcEEEEccCCcch-------------HHHHHHHHHHhCCCCCCccc
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSL---------GVGPTIVELDHHVAG-------------REIQAVLFQLSSNGQHQTVP 75 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~---------~v~~~~i~v~~~~~~-------------~~~~~~l~~~~g~~~~~~vP 75 (111)
.+++|+.+|||+|+++.+.+... ++.+..++++...+. .....++...+|. ..+|
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v---~gtP 84 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV---NGTP 84 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-----SSS
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC---CccC
Confidence 37778899999999887777631 222333444433211 1123468888898 9999
Q ss_pred EEE-EC--CE---EEeccHH
Q 037432 76 AIF-VG--GK---FLGGIET 89 (111)
Q Consensus 76 ~vf-i~--g~---~igg~~~ 89 (111)
+++ +| |+ .+.|+-.
T Consensus 85 t~~~~d~~G~~v~~~~G~~~ 104 (112)
T PF13098_consen 85 TIVFLDKDGKIVYRIPGYLS 104 (112)
T ss_dssp EEEECTTTSCEEEEEESS--
T ss_pred EEEEEcCCCCEEEEecCCCC
Confidence 985 54 66 4456543
No 130
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.37 E-value=2.6e-06 Score=52.10 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=34.0
Q ss_pred EEEEEeCCChhhHHHHHHHhhC-------CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL-------GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF 78 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~-------~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf 78 (111)
++.|+.+|||+|+++.+.+.+. ++.+-.+|.+.+ ... ...+.++. ..+|+++
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~~~---~~~~~~~v---~~~Pti~ 83 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--QRE---FAKEELQL---KSFPTIL 83 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--chh---hHHhhcCC---CcCCEEE
Confidence 6668899999999998888664 233444555542 121 12345687 8999884
No 131
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.37 E-value=1.6e-06 Score=51.00 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=41.2
Q ss_pred HHHHhhcCC-c-EEEEEeCCChhhHHHHHHHhhC------CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE
Q 037432 9 IVTHLASSN-A-VVLFSISGCCMCTVAKRLLFSL------GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF 78 (111)
Q Consensus 9 ~~~~~~~~~-~-vvif~~~~Cp~C~~~~~~l~~~------~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf 78 (111)
.+.+++... . +++|+++||++|+.+.+.+.+. +-.+....++-+.. ..+.+.++. ..+|+++
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~i---~~~Pt~~ 76 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-----NDLCSEYGV---RGYPTIK 76 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-----HHHHHhCCC---CCCCEEE
Confidence 455555544 3 6678899999999988888653 22344444443332 247788898 9999884
No 132
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.37 E-value=1.4e-06 Score=52.06 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=41.7
Q ss_pred HHHHhhcCCc-EEEEEeCCChhhHHHHHHHhhC----CC---CcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--E
Q 037432 9 IVTHLASSNA-VVLFSISGCCMCTVAKRLLFSL----GV---GPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--F 78 (111)
Q Consensus 9 ~~~~~~~~~~-vvif~~~~Cp~C~~~~~~l~~~----~v---~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--f 78 (111)
.+++.+..++ ++.|+++||++|+...+.+.+. +- .+....+|-+... .+...++. ..+|++ |
T Consensus 9 ~f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v---~~~Pt~~~~ 80 (102)
T cd03005 9 NFDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-----ELCSEFQV---RGYPTLLLF 80 (102)
T ss_pred HHHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-----hhHhhcCC---CcCCEEEEE
Confidence 3445444445 4568899999999888777544 11 2333444433322 36667787 899996 4
Q ss_pred ECCEEE
Q 037432 79 VGGKFL 84 (111)
Q Consensus 79 i~g~~i 84 (111)
-+|+.+
T Consensus 81 ~~g~~~ 86 (102)
T cd03005 81 KDGEKV 86 (102)
T ss_pred eCCCee
Confidence 566543
No 133
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=98.36 E-value=3.6e-06 Score=48.03 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=54.4
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEEC-CEEEeccHHHHHHH
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVG-GKFLGGIETLMACH 94 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~-g~~igg~~~~~~~~ 94 (111)
++|+.+.||+|.+++-+|...|++|+.+.++....... +++.+.+.. .++|++..+ |..+.....|.++.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~--~~~~~~nP~---~~vP~L~~~~g~~l~es~aI~~yL 72 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKT--PEFLKKFPL---GKVPAFEGADGFCLFESNAIAYYV 72 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCC--HHHHHhCCC---CCCCEEEcCCCCEEeeHHHHHHHH
Confidence 57889999999999999999999999988875432111 357777777 999999984 77777776666554
No 134
>PRK10387 glutaredoxin 2; Provisional
Probab=98.36 E-value=2.9e-06 Score=57.04 Aligned_cols=70 Identities=11% Similarity=0.226 Sum_probs=55.2
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE-EECCEEEeccHHHHHHHHc
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI-FVGGKFLGGIETLMACHIN 96 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v-fi~g~~igg~~~~~~~~~~ 96 (111)
+++|+.+.||+|.+++-+|...|++|+.++++..+... -...++. .+||++ .-||..+.....|..+..+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~-----~~~~~p~---~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT-----PIRMIGQ---KQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh-----HHHhcCC---cccceEEecCCeEecCHHHHHHHHHH
Confidence 46899999999999999999999999998886443211 1345566 899999 4688889999888887653
No 135
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.36 E-value=1.3e-06 Score=52.08 Aligned_cols=50 Identities=18% Similarity=0.093 Sum_probs=34.4
Q ss_pred EEEEEeCCChhhHHHHHHHhhC----C----CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL----G----VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF 78 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~----~----v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf 78 (111)
++.|+.+||+.|+...+.+.+. . +.+-.+|.+..+ .+.+.++. ..+|+++
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~~i---~~~P~~~ 74 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK-------DLASRFGV---SGFPTIK 74 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH-------HHHHhCCC---CcCCEEE
Confidence 6779999999999887777553 1 333334444332 36777888 9999983
No 136
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.35 E-value=5.8e-06 Score=58.45 Aligned_cols=69 Identities=25% Similarity=0.330 Sum_probs=45.1
Q ss_pred HHHHHhhcCCcEEEEEeCCChhhHHHHHHHhh----CCCCcEEEEccCCcchH----HHHHHHHHHhCCCCCCcccEEEE
Q 037432 8 EIVTHLASSNAVVLFSISGCCMCTVAKRLLFS----LGVGPTIVELDHHVAGR----EIQAVLFQLSSNGQHQTVPAIFV 79 (111)
Q Consensus 8 ~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~----~~v~~~~i~v~~~~~~~----~~~~~l~~~~g~~~~~~vP~vfi 79 (111)
..++++.....++.|+++|||+|+...+.|++ +++.+..+++|...... ..-..+...+|. ..+|++|+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV---~~vPtl~L 235 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKI---RTVPAVFL 235 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCC---CcCCeEEE
Confidence 34445545555777889999999988888765 46666667776532100 000136677898 99999853
No 137
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.33 E-value=2.2e-06 Score=51.29 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=41.8
Q ss_pred HHHHhhcCCc--EEEEEeCCChhhHHHHHHHhhC----C----CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE-
Q 037432 9 IVTHLASSNA--VVLFSISGCCMCTVAKRLLFSL----G----VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI- 77 (111)
Q Consensus 9 ~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~----~----v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v- 77 (111)
.+++.++.++ ++.|+.+|||+|+++.+.+.+. . +.+-.+|.+.+.. ..+....|. ..+|++
T Consensus 9 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----~~~~~~~~i---~~~Pt~~ 80 (104)
T cd02997 9 DFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH-----DALKEEYNV---KGFPTFK 80 (104)
T ss_pred hHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc-----HHHHHhCCC---ccccEEE
Confidence 3444444443 5678899999999887666543 1 2333445544212 236677788 899987
Q ss_pred -EECCEEE
Q 037432 78 -FVGGKFL 84 (111)
Q Consensus 78 -fi~g~~i 84 (111)
|-+|+.+
T Consensus 81 ~~~~g~~~ 88 (104)
T cd02997 81 YFENGKFV 88 (104)
T ss_pred EEeCCCee
Confidence 4566644
No 138
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.33 E-value=2.8e-06 Score=53.19 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=45.3
Q ss_pred HHHHHhhcCCc--EEE-EEeCCCh--hhH--HHH--------HHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCC
Q 037432 8 EIVTHLASSNA--VVL-FSISGCC--MCT--VAK--------RLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQ 72 (111)
Q Consensus 8 ~~~~~~~~~~~--vvi-f~~~~Cp--~C~--~~~--------~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~ 72 (111)
+.+++.+..++ +++ |..+||+ +|+ ... ..|+..++.+-.+|++.+++ |+..+|. .
T Consensus 17 ~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~-------La~~~~I---~ 86 (120)
T cd03065 17 KNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK-------VAKKLGL---D 86 (120)
T ss_pred hhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH-------HHHHcCC---c
Confidence 45555555443 444 5566775 498 333 33334467777788886644 8889999 9
Q ss_pred cccEE--EECCEEEe
Q 037432 73 TVPAI--FVGGKFLG 85 (111)
Q Consensus 73 ~vP~v--fi~g~~ig 85 (111)
++|++ |.||+.+.
T Consensus 87 ~iPTl~lfk~G~~v~ 101 (120)
T cd03065 87 EEDSIYVFKDDEVIE 101 (120)
T ss_pred cccEEEEEECCEEEE
Confidence 99997 78998664
No 139
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=98.31 E-value=8.7e-06 Score=46.44 Aligned_cols=73 Identities=12% Similarity=0.027 Sum_probs=56.0
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
+++|+.+.+|.|+++.-.|...|++|+.+.++..... ...+++...+.. .++|.+..+|..+.....+..+..
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~-~~~~~~~~~~p~---~~vP~L~~~~~~l~eS~aI~~Yl~ 73 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGE-QLTPEFKKINPF---GKVPAIVDGDFTLAESVAILRYLA 73 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCC-cCCHHHHHhCcC---CCCCEEEECCEEEEcHHHHHHHHH
Confidence 3689999999999999999999999998888643211 001246677777 899999988888887777766543
No 140
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.30 E-value=4.2e-06 Score=57.90 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=44.8
Q ss_pred EEEEEeCCChhhHHHHHHHhhC---CCCcEEEEcc---CCcchH----------------------------------HH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL---GVGPTIVELD---HHVAGR----------------------------------EI 58 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~---~v~~~~i~v~---~~~~~~----------------------------------~~ 58 (111)
|++|+-+.||||+++.+.+.++ ++.+.++... .++... +.
T Consensus 111 I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~v~~ 190 (232)
T PRK10877 111 ITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVDIAD 190 (232)
T ss_pred EEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccchHHH
Confidence 8889999999999999998875 4554443221 111100 01
Q ss_pred HHHHHHHhCCCCCCcccEEEE-CCEEEeccHH
Q 037432 59 QAVLFQLSSNGQHQTVPAIFV-GGKFLGGIET 89 (111)
Q Consensus 59 ~~~l~~~~g~~~~~~vP~vfi-~g~~igg~~~ 89 (111)
..++.+..|. ..+|++++ ||+.+.|+..
T Consensus 191 ~~~la~~lgi---~gTPtiv~~~G~~~~G~~~ 219 (232)
T PRK10877 191 HYALGVQFGV---QGTPAIVLSNGTLVPGYQG 219 (232)
T ss_pred hHHHHHHcCC---ccccEEEEcCCeEeeCCCC
Confidence 2233444566 89999988 9999999743
No 141
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.27 E-value=7.4e-06 Score=51.58 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=43.2
Q ss_pred HHHHHhhcCCc-EEE-EEeCCChhhHHHHH-HHhh------CCCCcEEE--EccCCcchHH-HHHHHHHHhCCCCCCccc
Q 037432 8 EIVTHLASSNA-VVL-FSISGCCMCTVAKR-LLFS------LGVGPTIV--ELDHHVAGRE-IQAVLFQLSSNGQHQTVP 75 (111)
Q Consensus 8 ~~~~~~~~~~~-vvi-f~~~~Cp~C~~~~~-~l~~------~~v~~~~i--~v~~~~~~~~-~~~~l~~~~g~~~~~~vP 75 (111)
+.++++.+.++ |++ |+.+||++|+.+.+ .|.. +.-.|..+ |+++.++... ..+.....+|. ..+|
T Consensus 6 eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~---~G~P 82 (124)
T cd02955 6 EAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQ---GGWP 82 (124)
T ss_pred HHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCC---CCCC
Confidence 34556665555 444 77999999998864 3433 23245444 4444444322 22223335577 8899
Q ss_pred EEE-E--CCEEEec
Q 037432 76 AIF-V--GGKFLGG 86 (111)
Q Consensus 76 ~vf-i--~g~~igg 86 (111)
+++ + +|+.+.+
T Consensus 83 t~vfl~~~G~~~~~ 96 (124)
T cd02955 83 LNVFLTPDLKPFFG 96 (124)
T ss_pred EEEEECCCCCEEee
Confidence 974 3 5677633
No 142
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.25 E-value=4.8e-06 Score=57.04 Aligned_cols=70 Identities=21% Similarity=0.301 Sum_probs=51.4
Q ss_pred HHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhh----CCCCcEEEEccCCc-----chHHHHHHHHHHhCCCCCCcccE
Q 037432 6 TYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFS----LGVGPTIVELDHHV-----AGREIQAVLFQLSSNGQHQTVPA 76 (111)
Q Consensus 6 ~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~----~~v~~~~i~v~~~~-----~~~~~~~~l~~~~g~~~~~~vP~ 76 (111)
-...++++.....+++|++++||+|+...++|+. +|+....|++|..+ +... -..+.+..|. ..+|+
T Consensus 111 ~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~-~~g~~~~l~v---~~~Pa 186 (215)
T PF13728_consen 111 RDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRP-DPGQAKRLGV---KVTPA 186 (215)
T ss_pred HHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCC-CHHHHHHcCC---CcCCE
Confidence 4455677777788999999999999988887764 58888888887431 1100 1246777898 99999
Q ss_pred EEE
Q 037432 77 IFV 79 (111)
Q Consensus 77 vfi 79 (111)
+|+
T Consensus 187 l~L 189 (215)
T PF13728_consen 187 LFL 189 (215)
T ss_pred EEE
Confidence 975
No 143
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.22 E-value=3.9e-06 Score=50.15 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=36.1
Q ss_pred EEEEEeCCChhhHHHHHHHhhC----C--CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL----G--VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV 79 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~----~--v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi 79 (111)
++.|+++|||+|+...+.+.+. . -.+....++-+... ..+...++. .++|++++
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~----~~~~~~~~i---~~~P~~~~ 81 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN----KDLAKKYGV---SGFPTLKF 81 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc----hhhHHhCCC---CCcCEEEE
Confidence 6678899999999888877653 2 23444455433311 236777788 99999853
No 144
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=98.20 E-value=2e-05 Score=44.59 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=54.2
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHH
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMAC 93 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~ 93 (111)
.+|+.+.+|+|++++-.|.+.|++|+.++++..... ...+++.+.+.. .++|.+..+|..+.....+..+
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~-~~~~~~~~~nP~---~~vP~L~~~~~~l~eS~aI~~Y 71 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGG-LDTPEFLAMNPN---GRVPVLEDGDFVLWESNAILRY 71 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEecccccc-ccCHHHHhhCCC---CCCCEEEECCEEEECHHHHHHH
Confidence 588999999999999999999999998887642210 011346677777 8999999999888877766554
No 145
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.17 E-value=8.4e-06 Score=54.94 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCC---cEE-EEEeCCChhhHHHHHHHhhCC-----CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccE
Q 037432 6 TYEIVTHLASSN---AVV-LFSISGCCMCTVAKRLLFSLG-----VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPA 76 (111)
Q Consensus 6 ~~~~~~~~~~~~---~vv-if~~~~Cp~C~~~~~~l~~~~-----v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~ 76 (111)
..++...+.... .|+ -|+.+|||.|+.+.+.|.++. +.|..++++. ....++. ..+|+
T Consensus 89 ~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~----------~~~~~~i---~~lPT 155 (192)
T cd02988 89 KPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ----------CIPNYPD---KNLPT 155 (192)
T ss_pred HHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH----------hHhhCCC---CCCCE
Confidence 344555554332 344 488999999999999887763 3344444432 2346687 89999
Q ss_pred E--EECCEEEe
Q 037432 77 I--FVGGKFLG 85 (111)
Q Consensus 77 v--fi~g~~ig 85 (111)
+ |-||+.++
T Consensus 156 lliyk~G~~v~ 166 (192)
T cd02988 156 ILVYRNGDIVK 166 (192)
T ss_pred EEEEECCEEEE
Confidence 7 67887653
No 146
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.17 E-value=5.2e-06 Score=57.23 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=39.5
Q ss_pred EEEEEeCCChhhHHHHHHHhhC----C--CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL----G--VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFL 84 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~----~--v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~i 84 (111)
++.|+.+|||+|++..+.+++. + +.+..+|.+.. ..+.+.++. ..+|++ |-+|+.+
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~-------~~l~~~~~I---~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA-------LNLAKRFAI---KGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc-------HHHHHHcCC---CcCCEEEEEECCEEE
Confidence 6678899999999999888764 2 22333344433 247778898 999987 5688765
No 147
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.1e-05 Score=46.12 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=46.5
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCc-chHH------HHHHHH--HHhCCCCCCcccEEEECC-EEEeccHH
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHV-AGRE------IQAVLF--QLSSNGQHQTVPAIFVGG-KFLGGIET 89 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~-~~~~------~~~~l~--~~~g~~~~~~vP~vfi~g-~~igg~~~ 89 (111)
++|++..||.|..+...|++.+++|++++|..+- +-.+ -..++- ...|. -.+|.+..++ +.|=| +|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gy---iGIPall~~d~~vVl~-~D 80 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGY---IGIPALLTDDGKVVLG-DD 80 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCc---ccceEEEeCCCcEEEe-ch
Confidence 8999999999999999999999999999996532 2111 011111 22355 7899997755 44444 44
Q ss_pred HH
Q 037432 90 LM 91 (111)
Q Consensus 90 ~~ 91 (111)
+.
T Consensus 81 l~ 82 (85)
T COG4545 81 LS 82 (85)
T ss_pred hh
Confidence 43
No 148
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=3.2e-05 Score=53.42 Aligned_cols=74 Identities=18% Similarity=0.104 Sum_probs=61.3
Q ss_pred CcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHHc
Q 037432 17 NAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHIN 96 (111)
Q Consensus 17 ~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~~ 96 (111)
..|.+|+...|||..+++-.|+..||+|+++++|-..... .|.+.... +..||++..||+.|.-.-.+.++.++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~----~ll~~np~--hkKVPvL~Hn~k~i~ESliiveYiDe 81 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSE----WLLEKNPV--HKKVPVLEHNGKPICESLIIVEYIDE 81 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCH----HHHHhccc--cccCCEEEECCceehhhHHHHHHHHh
Confidence 5599999999999999999999999999999988654322 46666634 48999999999999988888887653
No 149
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=98.11 E-value=2.7e-05 Score=44.44 Aligned_cols=71 Identities=20% Similarity=0.331 Sum_probs=52.7
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEEC-CEEEeccHHHHHHHH
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVG-GKFLGGIETLMACHI 95 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~-g~~igg~~~~~~~~~ 95 (111)
.+|+.+.|+ |.+++-+|.+.|++|+.++++.... ....+++.+.++. .++|.+..+ |..+.....|..+..
T Consensus 2 ~Ly~~~~~~-~~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~np~---~~vP~l~~~~g~~l~eS~aI~~yL~ 73 (77)
T cd03057 2 KLYYSPGAC-SLAPHIALEELGLPFELVRVDLRTK-TQKGADYLAINPK---GQVPALVLDDGEVLTESAAILQYLA 73 (77)
T ss_pred EEEeCCCCc-hHHHHHHHHHcCCCceEEEEecccC-ccCCHhHHHhCCC---CCCCEEEECCCcEEEcHHHHHHHHH
Confidence 578877764 8899999999999999888765331 0011357777887 999999887 788888877777643
No 150
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.10 E-value=1e-06 Score=55.85 Aligned_cols=69 Identities=12% Similarity=0.255 Sum_probs=37.7
Q ss_pred hhHHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhC-----CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE
Q 037432 4 EKTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSL-----GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF 78 (111)
Q Consensus 4 ~~~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~-----~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf 78 (111)
.+..+.++.+.+.-.+.+++.+|||+|....++|.+. +++.+++..|.+++.- +.... .|. +++|+++
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~---~~~lt-~g~---~~IP~~I 102 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELM---DQYLT-NGG---RSIPTFI 102 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHT---TTTTT--SS-----SSEEE
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHH---HHHHh-CCC---eecCEEE
Confidence 3445566666666679999999999999888777654 5666666666544311 11222 455 8999985
Q ss_pred E
Q 037432 79 V 79 (111)
Q Consensus 79 i 79 (111)
+
T Consensus 103 ~ 103 (129)
T PF14595_consen 103 F 103 (129)
T ss_dssp E
T ss_pred E
Confidence 4
No 151
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=98.07 E-value=1.3e-05 Score=49.19 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=33.2
Q ss_pred EEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhC
Q 037432 22 FSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSS 67 (111)
Q Consensus 22 f~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g 67 (111)
|+.+.|.-|++|.++|++.|++|+++|+...+-..+....+.+..|
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhc
Confidence 7889999999999999999999999999877666555556666666
No 152
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=98.05 E-value=3.4e-05 Score=53.60 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=54.2
Q ss_pred CCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 25 SGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 25 ~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
..||+|++++-.|...|++|+.+.++...... ++.+.+.. .++|++..+|..+.....|.++..
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~----~fl~inP~---g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPE----DLQNLAPG---THPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCH----HHHHHCcC---CCCCEEEECCEEeecHHHHHHHHH
Confidence 46999999999999999999999887654322 57788887 899999999999999988888765
No 153
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.05 E-value=2.2e-05 Score=52.75 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=44.9
Q ss_pred CcEEEEEeCCChhhHHHHHHHhh--CCCCcEEEEc--cCCcchHH-----------------------------------
Q 037432 17 NAVVLFSISGCCMCTVAKRLLFS--LGVGPTIVEL--DHHVAGRE----------------------------------- 57 (111)
Q Consensus 17 ~~vvif~~~~Cp~C~~~~~~l~~--~~v~~~~i~v--~~~~~~~~----------------------------------- 57 (111)
..|++|+.+.||||+++.+.+.+ .++.+..+.+ ..++....
T Consensus 79 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~~~i 158 (197)
T cd03020 79 RVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCDNPV 158 (197)
T ss_pred EEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccCchH
Confidence 34888999999999999999984 3444444433 21111100
Q ss_pred -HHHHHHHHhCCCCCCcccEEEE-CCEEEeccHHH
Q 037432 58 -IQAVLFQLSSNGQHQTVPAIFV-GGKFLGGIETL 90 (111)
Q Consensus 58 -~~~~l~~~~g~~~~~~vP~vfi-~g~~igg~~~~ 90 (111)
....+....|. ..+|++++ ||+.+.|+.+.
T Consensus 159 ~~~~~l~~~~gi---~gtPtii~~~G~~~~G~~~~ 190 (197)
T cd03020 159 AANLALGRQLGV---NGTPTIVLADGRVVPGAPPA 190 (197)
T ss_pred HHHHHHHHHcCC---CcccEEEECCCeEecCCCCH
Confidence 11133344565 89999988 58999988653
No 154
>PTZ00062 glutaredoxin; Provisional
Probab=98.04 E-value=2.6e-05 Score=53.04 Aligned_cols=66 Identities=9% Similarity=0.038 Sum_probs=44.1
Q ss_pred HHHHHHHhhc--CCc-EEEEEeCCChhhHHHHHHHhhCCCC---cEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--
Q 037432 6 TYEIVTHLAS--SNA-VVLFSISGCCMCTVAKRLLFSLGVG---PTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI-- 77 (111)
Q Consensus 6 ~~~~~~~~~~--~~~-vvif~~~~Cp~C~~~~~~l~~~~v~---~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v-- 77 (111)
+.+.+.++++ ... |+.|+.+|||.|+.+.++|.++.-. +..+.|+.+ ++. ..+|++
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------------~~V---~~vPtfv~ 68 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------------DAN---NEYGVFEF 68 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------------cCc---ccceEEEE
Confidence 4455666666 234 4456699999999999999877332 345555533 677 899976
Q ss_pred EECCEEEecc
Q 037432 78 FVGGKFLGGI 87 (111)
Q Consensus 78 fi~g~~igg~ 87 (111)
|-||+.++.+
T Consensus 69 ~~~g~~i~r~ 78 (204)
T PTZ00062 69 YQNSQLINSL 78 (204)
T ss_pred EECCEEEeee
Confidence 5688776543
No 155
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.03 E-value=2.3e-05 Score=48.38 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=37.7
Q ss_pred HHHHhhcCC--c-EEEEEeCCChhhHHHHHHHhhCCCC-------cEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE
Q 037432 9 IVTHLASSN--A-VVLFSISGCCMCTVAKRLLFSLGVG-------PTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF 78 (111)
Q Consensus 9 ~~~~~~~~~--~-vvif~~~~Cp~C~~~~~~l~~~~v~-------~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf 78 (111)
.+++.+..+ . ++.|+.+|||.|+...+.+.+..-. +....++-+.+.. ..+...++. ..+|+++
T Consensus 10 ~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~---~~~~~~~~i---~~~Pt~~ 83 (114)
T cd02992 10 SFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN---VALCRDFGV---TGYPTLR 83 (114)
T ss_pred hHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh---HHHHHhCCC---CCCCEEE
Confidence 344444333 3 5558899999999888877654211 2223333221111 246677788 8999984
No 156
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.03 E-value=6.5e-05 Score=42.68 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=51.0
Q ss_pred eCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHH
Q 037432 24 ISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMAC 93 (111)
Q Consensus 24 ~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~ 93 (111)
...||+|++++-+|...|++|+.+.++...... .+++.+.+.. .++|.+..+|..+.....+..+
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~--~~~~~~~nP~---g~vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDT--RARILEFSPT---GKVPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccc--cHHHHhhCCC---CcCCEEEECCEEEEcHHHHHHH
Confidence 467999999999999999999988886533211 1357777777 9999999999888887776654
No 157
>PRK15113 glutathione S-transferase; Provisional
Probab=98.03 E-value=5.4e-05 Score=51.33 Aligned_cols=74 Identities=16% Similarity=0.078 Sum_probs=56.9
Q ss_pred CcEEEEEeC--CChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHH
Q 037432 17 NAVVLFSIS--GCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACH 94 (111)
Q Consensus 17 ~~vvif~~~--~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~ 94 (111)
+.+++|+.+ .||+|++++-+|.+.|++|+.+.++..... ...+++.+.+.. ..||++..||..+-....|..+.
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~-~~~~~~~~~nP~---g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGE-HLQPTYQGYSLT---RRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCcc-ccCHHHHhcCCC---CCCCEEEECCEEEecHHHHHHHH
Confidence 457899965 699999999999999999999888743211 011357777777 99999999998887777776654
No 158
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.95 E-value=5.2e-05 Score=53.23 Aligned_cols=71 Identities=13% Similarity=0.212 Sum_probs=52.3
Q ss_pred hHHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHh----hCCCCcEEEEccCCcc-----hHHHHHHHHHHhCCCCCCccc
Q 037432 5 KTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLF----SLGVGPTIVELDHHVA-----GREIQAVLFQLSSNGQHQTVP 75 (111)
Q Consensus 5 ~~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~----~~~v~~~~i~v~~~~~-----~~~~~~~l~~~~g~~~~~~vP 75 (111)
+..+.++++.+...+++|+++.||+|++.-.+++ ++|+....+.+|.... .+. -..++...|. ..+|
T Consensus 140 ~~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~-d~gqa~~l~v---~~~P 215 (256)
T TIGR02739 140 QKEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRS-DSGQAQHLGV---KYFP 215 (256)
T ss_pred HHHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccC-ChHHHHhcCC---ccCc
Confidence 3456677777888899999999999998888775 5688888888885421 100 0236667788 8999
Q ss_pred EEEE
Q 037432 76 AIFV 79 (111)
Q Consensus 76 ~vfi 79 (111)
++|+
T Consensus 216 al~L 219 (256)
T TIGR02739 216 ALYL 219 (256)
T ss_pred eEEE
Confidence 9975
No 159
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=97.92 E-value=0.00018 Score=40.63 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=53.2
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCc--chHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHV--AGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~--~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
.+|+.+. +.|.+++-+|...|++|+.+.++... ... +++.+.+.. .++|.+..+|..+.....|..+..
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~---~~~~~~~p~---~~vP~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAP---PEYLAINPL---GKVPVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCC---HHHHhcCCC---CCCCEEEECCEEEEcHHHHHHHHH
Confidence 5677665 67899999999999999988877431 111 246667776 899999999999998888877653
No 160
>PLN02378 glutathione S-transferase DHAR1
Probab=97.91 E-value=8.4e-05 Score=50.48 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=51.4
Q ss_pred CCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 25 SGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 25 ~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
..||+|+++.-+|.+.|++|+.+.++...... ++.+.+.. .+||++..||..+.....|..+..
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~----~~l~inP~---G~VPvL~~~~~~l~ES~aI~~YL~ 81 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDKPQ----WFLDISPQ---GKVPVLKIDDKWVTDSDVIVGILE 81 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccCCH----HHHHhCCC---CCCCEEEECCEEecCHHHHHHHHH
Confidence 45999999999999999999988887543322 47777777 999999999988887777777654
No 161
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.91 E-value=5.7e-05 Score=50.49 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=37.3
Q ss_pred cEEEEEeCCChhhHHHHHHH----hhCCCCcEEEEccCCc-----chH-HHHHHHHHHhCCCCCCcccEEEE
Q 037432 18 AVVLFSISGCCMCTVAKRLL----FSLGVGPTIVELDHHV-----AGR-EIQAVLFQLSSNGQHQTVPAIFV 79 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l----~~~~v~~~~i~v~~~~-----~~~-~~~~~l~~~~g~~~~~~vP~vfi 79 (111)
++++|+.+|||+|++..+.| +++++.+.-+.+|... ... .-...+...+|. ....+|+.|+
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~-~~~~iPttfL 142 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPN-IPVATPTTFL 142 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCC-CCCCCCeEEE
Confidence 48889999999999875555 4557766667776442 100 001235555662 0158899864
No 162
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.88 E-value=8.3e-05 Score=44.27 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=31.9
Q ss_pred EEEEEeCCChhhHHHHHHHhhCC--------CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLG--------VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF 78 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~--------v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf 78 (111)
++.|+.+||++|+...+.+.+.. +.+..+|.+.. .+....+. .++|+++
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--------~~~~~~~~---~~~Pt~~ 78 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--------DVPSEFVV---DGFPTIL 78 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--------hhhhhccC---CCCCEEE
Confidence 56688999999998888876542 22333444432 13444566 7899874
No 163
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.87 E-value=7.9e-05 Score=48.53 Aligned_cols=38 Identities=26% Similarity=0.380 Sum_probs=28.6
Q ss_pred cCCcEEEEEeCCChhhHHHHHHHhh----CCCCcEEEEccCC
Q 037432 15 SSNAVVLFSISGCCMCTVAKRLLFS----LGVGPTIVELDHH 52 (111)
Q Consensus 15 ~~~~vvif~~~~Cp~C~~~~~~l~~----~~v~~~~i~v~~~ 52 (111)
+...++.|+.+|||+|++..+.|.+ +++.+..+++|..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQ 91 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 4455888999999999988888864 4666666677653
No 164
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=97.87 E-value=0.00011 Score=51.91 Aligned_cols=64 Identities=13% Similarity=0.185 Sum_probs=51.3
Q ss_pred CCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 25 SGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 25 ~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
..||+|++++-+|.++|++|+.+.++...... ++.+++.. ..+|++..+|..+.....|..+..
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~----~fl~iNP~---GkVPvL~~d~~~L~ES~aI~~YL~ 134 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPE----WFLKISPE---GKVPVVKLDEKWVADSDVITQALE 134 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCH----HHHhhCCC---CCCCEEEECCEEEecHHHHHHHHH
Confidence 46999999999999999999988776543322 46677776 899999999988888877777643
No 165
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.84 E-value=8.4e-05 Score=51.97 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=50.1
Q ss_pred HHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhh----CCCCcEEEEccCCcc-----hHHHHHHHHHHhCCCCCCcccE
Q 037432 6 TYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFS----LGVGPTIVELDHHVA-----GREIQAVLFQLSSNGQHQTVPA 76 (111)
Q Consensus 6 ~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~----~~v~~~~i~v~~~~~-----~~~~~~~l~~~~g~~~~~~vP~ 76 (111)
-.+.++++.+...+++|+++.||+|++..++|+. +|+....+.+|.... .+. -.......|. ..+|.
T Consensus 134 ~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~-d~gqa~~l~v---~~~PA 209 (248)
T PRK13703 134 QRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRT-DQGQAQRLGV---KYFPA 209 (248)
T ss_pred HHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCcc-ChhHHHhcCC---cccce
Confidence 4455777778889999999999999988887764 588888888875221 100 0124456787 89999
Q ss_pred EEE
Q 037432 77 IFV 79 (111)
Q Consensus 77 vfi 79 (111)
+|+
T Consensus 210 l~L 212 (248)
T PRK13703 210 LML 212 (248)
T ss_pred EEE
Confidence 975
No 166
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.84 E-value=8.9e-05 Score=56.05 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=38.6
Q ss_pred EEEEEeCCChhhHHHHHHHhhC-------CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL-------GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGK 82 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~-------~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~ 82 (111)
++.|+.+|||+|+.+.+.|.++ ++.+-.+|+|.+.. + .....++. ..+|++ |.+|.
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~---~~~~~~~I---~~~PTii~Fk~g~ 439 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--E---FAKQELQL---GSFPTILFFPKHS 439 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--H---HHHHHcCC---CccceEEEEECCC
Confidence 5568999999999999888654 24455567775432 1 23456788 899997 55663
No 167
>PLN02473 glutathione S-transferase
Probab=97.83 E-value=0.00021 Score=48.18 Aligned_cols=70 Identities=13% Similarity=0.049 Sum_probs=55.4
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCc--chHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHV--AGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACH 94 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~--~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~ 94 (111)
+.+|+.+.||+|++++-+|.++|++|+.+.++... ... +++...+.. .+||++..||..+....-|..+.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~---~~~~~~nP~---g~vP~L~~~g~~l~ES~aI~~YL 74 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKK---PEHLLRQPF---GQVPAIEDGDLKLFESRAIARYY 74 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCC---HHHHhhCCC---CCCCeEEECCEEEEehHHHHHHH
Confidence 57899999999999999999999999988775432 111 235556776 89999999998888888777754
No 168
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=97.80 E-value=7e-05 Score=50.30 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=54.9
Q ss_pred EEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 21 LFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 21 if~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
+|+.+.||+|++++-+|.+.|++|+.+.++.........+++.+.+.. .++|++..||..+.....|..+..
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~---g~vP~L~~~g~~l~ES~aI~~yl~ 73 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ---GLVPTLDIDGEVLTQSLAIIEYLE 73 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC---CcCCEEEECCEEeecHHHHHHHHH
Confidence 678889999999999999999999988876421000001247777776 899999999998888887777553
No 169
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=4.5e-05 Score=50.73 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=54.5
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE-ECCEEEeccHHHHHHHH
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF-VGGKFLGGIETLMACHI 95 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf-i~g~~igg~~~~~~~~~ 95 (111)
.+|..+.||||.+++-++-=.+++++..-++.+++.. =...-|+ ..||.+. -||++.+..-|++.+..
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~T-----p~rmiG~---KqVPiL~Kedg~~m~ESlDIV~y~d 70 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEET-----PIRMIGQ---KQVPILQKEDGRAMPESLDIVHYVD 70 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChhhheeccCcccC-----hhhhhcc---cccceEEccccccchhhhHHHHHHH
Confidence 3688899999999999999999999877776655533 2345688 9999987 57889999888888764
No 170
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.80 E-value=5.9e-05 Score=56.03 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=43.8
Q ss_pred HHHHHhhcCCc--EEEEEeCCChhhHHHHHHHhhC-------C--CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccE
Q 037432 8 EIVTHLASSNA--VVLFSISGCCMCTVAKRLLFSL-------G--VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPA 76 (111)
Q Consensus 8 ~~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~-------~--v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~ 76 (111)
+.+.++++.++ ++.|+++||++|+++.+.+.+. + +.+-.+|.+..+ .+.+.+|. ..+|+
T Consensus 9 ~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-------~l~~~~~i---~~~Pt 78 (462)
T TIGR01130 9 DNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK-------DLAQKYGV---SGYPT 78 (462)
T ss_pred HHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH-------HHHHhCCC---ccccE
Confidence 45566666665 5668899999999887766542 3 333444444332 37778898 89998
Q ss_pred E--EECCEE
Q 037432 77 I--FVGGKF 83 (111)
Q Consensus 77 v--fi~g~~ 83 (111)
+ |-+|+.
T Consensus 79 ~~~~~~g~~ 87 (462)
T TIGR01130 79 LKIFRNGED 87 (462)
T ss_pred EEEEeCCcc
Confidence 7 556664
No 171
>PTZ00102 disulphide isomerase; Provisional
Probab=97.79 E-value=5.9e-05 Score=56.56 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=42.2
Q ss_pred HHHHHhhcCCc--EEEEEeCCChhhHHHHHHHhhC-------CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE-
Q 037432 8 EIVTHLASSNA--VVLFSISGCCMCTVAKRLLFSL-------GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI- 77 (111)
Q Consensus 8 ~~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~-------~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v- 77 (111)
+.+.++++.++ ++.|+.+|||+|+++.+.+.+. +-++....+|-... ..+...++. ..+|++
T Consensus 40 ~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-----~~l~~~~~i---~~~Pt~~ 111 (477)
T PTZ00102 40 STFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-----MELAQEFGV---RGYPTIK 111 (477)
T ss_pred hhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-----HHHHHhcCC---CcccEEE
Confidence 34555555454 6668899999999887655432 22334444443333 237778898 899987
Q ss_pred -EECCEE
Q 037432 78 -FVGGKF 83 (111)
Q Consensus 78 -fi~g~~ 83 (111)
|-+|..
T Consensus 112 ~~~~g~~ 118 (477)
T PTZ00102 112 FFNKGNP 118 (477)
T ss_pred EEECCce
Confidence 455653
No 172
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.75 E-value=8.2e-05 Score=43.14 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCc--EEEEEeCCChhhHHHHHHHhhC-------CCCcEEEEccCCcch
Q 037432 6 TYEIVTHLASSNA--VVLFSISGCCMCTVAKRLLFSL-------GVGPTIVELDHHVAG 55 (111)
Q Consensus 6 ~~~~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~-------~v~~~~i~v~~~~~~ 55 (111)
..+.+.++.++++ ++.|+++||++|+...+.+-+. .-.|..+.+|.+...
T Consensus 6 ~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~ 64 (82)
T PF13899_consen 6 YEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDED 64 (82)
T ss_dssp HHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHH
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCC
Confidence 3455555554454 5568899999999888766332 335666666654443
No 173
>PLN02309 5'-adenylylsulfate reductase
Probab=97.73 E-value=0.00013 Score=55.06 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=35.6
Q ss_pred EEEEEeCCChhhHHHHHHHhhC-------CCCcEEEEccCCcchHHHHHHHH-HHhCCCCCCcccEE--EECC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL-------GVGPTIVELDHHVAGREIQAVLF-QLSSNGQHQTVPAI--FVGG 81 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~-------~v~~~~i~v~~~~~~~~~~~~l~-~~~g~~~~~~vP~v--fi~g 81 (111)
++.|+.+|||+|+.+.+.+.++ ++.+-.+|++.. + . .+. +.++. ..+|++ |.+|
T Consensus 369 lV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~-~-~----~la~~~~~I---~~~PTil~f~~g 432 (457)
T PLN02309 369 LVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD-Q-K----EFAKQELQL---GSFPTILLFPKN 432 (457)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc-c-h----HHHHhhCCC---ceeeEEEEEeCC
Confidence 6679999999999999888765 233344454422 1 1 243 35788 899998 4455
No 174
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=97.70 E-value=9.4e-05 Score=50.27 Aligned_cols=69 Identities=26% Similarity=0.335 Sum_probs=39.3
Q ss_pred EEEEEeCCChhhHHHHHHHhhCC----CCcEEEEcc-----------CCcchHHHHHHHHHHhCCCCCCcccEEEECCE-
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLG----VGPTIVELD-----------HHVAGREIQAVLFQLSSNGQHQTVPAIFVGGK- 82 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~----v~~~~i~v~-----------~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~- 82 (111)
|.+|++.+|+.|-.|-.+|.++. |=.--+.|| ..++..+.|....+..|. .....|+++|||.
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~-~~vYTPQ~vVnG~~ 80 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGL-RSVYTPQVVVNGRE 80 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT--S---SSEEEETTTE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCC-CCCcCCeEEECCee
Confidence 56899999999999999998762 211122222 233445555667776664 1256799999994
Q ss_pred EEeccH
Q 037432 83 FLGGIE 88 (111)
Q Consensus 83 ~igg~~ 88 (111)
+.+|++
T Consensus 81 ~~~g~~ 86 (202)
T PF06764_consen 81 HRVGSD 86 (202)
T ss_dssp EEETT-
T ss_pred eeeccC
Confidence 567765
No 175
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.69 E-value=0.0002 Score=44.80 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=37.6
Q ss_pred EEEEEeCCChhhHHHHHHHhhC---------CCCcEEEEccCCcch-----------------HHHHHHHHHHhCCCCCC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL---------GVGPTIVELDHHVAG-----------------REIQAVLFQLSSNGQHQ 72 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~---------~v~~~~i~v~~~~~~-----------------~~~~~~l~~~~g~~~~~ 72 (111)
++.|+.+|||.|++..+.|.+. ++.+..+.+|...+. ......+.+.+|. .
T Consensus 22 ll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~ 98 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI---E 98 (131)
T ss_pred EEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC---C
Confidence 4457799999999777766532 233444555533210 0112356667787 8
Q ss_pred cccEEE-E--CCEEE
Q 037432 73 TVPAIF-V--GGKFL 84 (111)
Q Consensus 73 ~vP~vf-i--~g~~i 84 (111)
.+|+++ + +|+.+
T Consensus 99 ~~P~~~lid~~G~i~ 113 (131)
T cd03009 99 GIPTLIILDADGEVV 113 (131)
T ss_pred CCCEEEEECCCCCEE
Confidence 899985 4 45544
No 176
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.68 E-value=7.2e-05 Score=44.71 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=36.9
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCC------CCcEEEEccCCcchHHHHHHHHHHhCCCCCC--cccEEEE
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLG------VGPTIVELDHHVAGREIQAVLFQLSSNGQHQ--TVPAIFV 79 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~------v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~--~vP~vfi 79 (111)
-+++|..+||+.|..+++.|++.. +.+-.+|++..+ .+.+..|. . .+|++.+
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~-------~~~~~~~i---~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG-------RHLEYFGL---KEEDLPVIAI 74 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH-------HHHHHcCC---ChhhCCEEEE
Confidence 366688899999999999887652 344455555432 36777887 6 8999853
No 177
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.67 E-value=0.00073 Score=42.08 Aligned_cols=70 Identities=16% Similarity=0.015 Sum_probs=48.0
Q ss_pred HHHHHhhcCCc--EEEEEe--CCCh---hhHHHHHHHhhC--CCCcEEEEccCCcchHHHHHHHHHHhCCCCCC--cccE
Q 037432 8 EIVTHLASSNA--VVLFSI--SGCC---MCTVAKRLLFSL--GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQ--TVPA 76 (111)
Q Consensus 8 ~~~~~~~~~~~--vvif~~--~~Cp---~C~~~~~~l~~~--~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~--~vP~ 76 (111)
..+.+.++.++ +|.|.. |||. +|.++.+-+... .+.+-.+|.+...+..+ ..|.+.+|. . .+|+
T Consensus 9 ~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~--~~L~~~y~I---~~~gyPT 83 (116)
T cd03007 9 VTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLN--MELGERYKL---DKESYPV 83 (116)
T ss_pred hhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhh--HHHHHHhCC---CcCCCCE
Confidence 34556666666 556999 9999 999888777554 35566667654333222 369999998 7 8998
Q ss_pred E--EECCE
Q 037432 77 I--FVGGK 82 (111)
Q Consensus 77 v--fi~g~ 82 (111)
+ |.+|.
T Consensus 84 l~lF~~g~ 91 (116)
T cd03007 84 IYLFHGGD 91 (116)
T ss_pred EEEEeCCC
Confidence 7 67774
No 178
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.64 E-value=0.00071 Score=45.08 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=22.9
Q ss_pred EEEEEeCCChhhHHHHHHHhhC---CCCcEEEEccC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL---GVGPTIVELDH 51 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~---~v~~~~i~v~~ 51 (111)
++.|+.+|||+|++..+.|.++ ++.+--++++.
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~ 107 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKD 107 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 5558899999999888777655 45444445443
No 179
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.61 E-value=0.00061 Score=43.12 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=18.6
Q ss_pred CcccEEEECCEEEeccHHHHHH
Q 037432 72 QTVPAIFVGGKFLGGIETLMAC 93 (111)
Q Consensus 72 ~~vP~vfi~g~~igg~~~~~~~ 93 (111)
..+|+++++|+.+.|..+...+
T Consensus 128 ~gtPt~~v~g~~~~G~~~~~~l 149 (154)
T cd03023 128 TGTPAFIIGDTVIPGAVPADTL 149 (154)
T ss_pred CcCCeEEECCEEecCCCCHHHH
Confidence 7899999999999998765554
No 180
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.61 E-value=0.00037 Score=43.77 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=37.7
Q ss_pred EEEEEeCCChhhHHHHHHHhhC---------CCCcEEEEccCCcch------------------HHHHHHHHHHhCCCCC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL---------GVGPTIVELDHHVAG------------------REIQAVLFQLSSNGQH 71 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~---------~v~~~~i~v~~~~~~------------------~~~~~~l~~~~g~~~~ 71 (111)
++.|+.+|||.|+...+.|.++ ++.+..++++..++. ......+.+.+|.
T Consensus 21 ll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v--- 97 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKV--- 97 (132)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCC---
Confidence 4457799999999877666432 233444555543210 0112356666787
Q ss_pred CcccEEE-EC--CEEE
Q 037432 72 QTVPAIF-VG--GKFL 84 (111)
Q Consensus 72 ~~vP~vf-i~--g~~i 84 (111)
..+|+++ +| |+.+
T Consensus 98 ~~iPt~~lid~~G~iv 113 (132)
T cd02964 98 EGIPTLVVLKPDGDVV 113 (132)
T ss_pred CCCCEEEEECCCCCEE
Confidence 8999986 54 5544
No 181
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.59 E-value=0.0005 Score=53.33 Aligned_cols=59 Identities=14% Similarity=0.207 Sum_probs=37.3
Q ss_pred EEEEEeCCChhhHHHHHH-H------hhC-CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE-E--CCEE
Q 037432 19 VVLFSISGCCMCTVAKRL-L------FSL-GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF-V--GGKF 83 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~-l------~~~-~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf-i--~g~~ 83 (111)
++.|+.+||++|+..++. + +++ ++.+-.+|++.+.+.. .++.+.++. ..+|+++ + ||+.
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~---~~l~~~~~v---~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAED---VALLKHYNV---LGLPTILFFDAQGQE 547 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhh---HHHHHHcCC---CCCCEEEEECCCCCC
Confidence 445889999999987654 2 122 3444456666543222 257778898 8999984 4 4654
No 182
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0003 Score=47.42 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=56.5
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCE-EEeccHHHHHHHHc
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGK-FLGGIETLMACHIN 96 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~-~igg~~~~~~~~~~ 96 (111)
++|+.+.+|+|.++.-.+.++|++|+.+.++..... ..+++...+.. ..||++..+|- .+-....|..+..+
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~--~~~~~~~~nP~---gkVPvL~~~~~~~l~ES~AI~~YL~~ 74 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQ--KPPDFLALNPL---GKVPALVDDDGEVLTESGAILEYLAE 74 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCccccc--CCHHHHhcCCC---CCCCEEeeCCCCeeecHHHHHHHHHh
Confidence 578888889999999999999999999988866411 11357788887 99999998875 67777777766543
No 183
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.57 E-value=0.0004 Score=43.10 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=17.8
Q ss_pred EEEEEeCCChhhHHHHHHHhhC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL 40 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~ 40 (111)
++.|+.+|||.|.+..+.|.++
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHH
Confidence 5668899999999877777654
No 184
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00019 Score=54.51 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=49.7
Q ss_pred HHHHHHhhcCCcE--EEEEeCCChhhH-------HHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE
Q 037432 7 YEIVTHLASSNAV--VLFSISGCCMCT-------VAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI 77 (111)
Q Consensus 7 ~~~~~~~~~~~~v--vif~~~~Cp~C~-------~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v 77 (111)
.+.+.+.+..+.. |-|+.|||.||. ++...|.+.+-+.....||-..+ ..+...++. +.+|++
T Consensus 32 ~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-----~~~~~~y~v---~gyPTl 103 (493)
T KOG0190|consen 32 KDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-----SDLASKYEV---RGYPTL 103 (493)
T ss_pred cccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-----hhhHhhhcC---CCCCeE
Confidence 3556777877874 459999999997 55566666655555556664444 248888998 999997
Q ss_pred --EECCEE
Q 037432 78 --FVGGKF 83 (111)
Q Consensus 78 --fi~g~~ 83 (111)
|.||+.
T Consensus 104 kiFrnG~~ 111 (493)
T KOG0190|consen 104 KIFRNGRS 111 (493)
T ss_pred EEEecCCc
Confidence 889975
No 185
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=97.54 E-value=0.00073 Score=39.94 Aligned_cols=66 Identities=11% Similarity=0.182 Sum_probs=37.6
Q ss_pred EEEEeC-CChhhH------HHHHHHhh--------CCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEE
Q 037432 20 VLFSIS-GCCMCT------VAKRLLFS--------LGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFL 84 (111)
Q Consensus 20 vif~~~-~Cp~C~------~~~~~l~~--------~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~i 84 (111)
++|++. -|+.|. ....||+. ..+.++++|+...++...-++...++..- ..-.|.|.++|+.|
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ed--e~fYPlV~i~~eiV 78 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILED--ELFYPLVVINDEIV 78 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTT--SS-SSEEEETTEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhc--ccccceEEECCEEE
Confidence 478864 599994 44445542 24667899998877654444444444443 26779999999999
Q ss_pred ecc
Q 037432 85 GGI 87 (111)
Q Consensus 85 gg~ 87 (111)
|.-
T Consensus 79 ~EG 81 (93)
T PF07315_consen 79 AEG 81 (93)
T ss_dssp EES
T ss_pred ecC
Confidence 743
No 186
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.52 E-value=0.00051 Score=39.84 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=38.3
Q ss_pred EEEEEeCCChhhHHHHHHHhhC------CCCcEEEEccCCcc--------------------hHHHHH-----HHHHHhC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL------GVGPTIVELDHHVA--------------------GREIQA-----VLFQLSS 67 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~------~v~~~~i~v~~~~~--------------------~~~~~~-----~l~~~~g 67 (111)
|.+|+.+.||+|..+.+.+.+. ++.+..+.+.-... ..++.+ .+....|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4689999999999888888764 34455554432221 011111 2334456
Q ss_pred CCCCCcccEEEECC
Q 037432 68 NGQHQTVPAIFVGG 81 (111)
Q Consensus 68 ~~~~~~vP~vfi~g 81 (111)
. ..+|+++++|
T Consensus 81 ~---~g~Pt~v~~~ 91 (98)
T cd02972 81 V---TGTPTFVVNG 91 (98)
T ss_pred C---CCCCEEEECC
Confidence 6 8999999999
No 187
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.52 E-value=9.5e-05 Score=46.26 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=26.1
Q ss_pred CCChhhHHHHHHHhhC------CCCcEEEEccCCcchHHHHHHHHH--HhCCCCCCcccEEEE
Q 037432 25 SGCCMCTVAKRLLFSL------GVGPTIVELDHHVAGREIQAVLFQ--LSSNGQHQTVPAIFV 79 (111)
Q Consensus 25 ~~Cp~C~~~~~~l~~~------~v~~~~i~v~~~~~~~~~~~~l~~--~~g~~~~~~vP~vfi 79 (111)
+|||+|+++.+.+++. +..+..+.|...+.-+.-...++. ..+. ..+|+++-
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l---~~IPTLi~ 95 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL---KGIPTLIR 95 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC------SSSEEEE
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee---eecceEEE
Confidence 6999999998777543 233445566432211110012444 4566 89999973
No 188
>PRK10357 putative glutathione S-transferase; Provisional
Probab=97.51 E-value=0.00056 Score=45.71 Aligned_cols=68 Identities=16% Similarity=0.054 Sum_probs=52.0
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE-CCEEEeccHHHHHHH
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV-GGKFLGGIETLMACH 94 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi-~g~~igg~~~~~~~~ 94 (111)
.+|+.+.||++++++-+|...|++|+.++++...... .+.+.+.. .++|++.. +|..+-....|..+.
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~----~~~~~nP~---g~vP~L~~~~g~~l~eS~aI~~yL 70 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADN----GVAQYNPL---GKVPALVTEEGECWFDSPIIAEYI 70 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCch----hhhhcCCc---cCCCeEEeCCCCeeecHHHHHHHH
Confidence 5889999999999999999999999998887543322 35556666 89999984 676666666666543
No 189
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.49 E-value=0.00075 Score=43.29 Aligned_cols=21 Identities=29% Similarity=0.582 Sum_probs=17.3
Q ss_pred CcccEEEECCEEEeccHHHHH
Q 037432 72 QTVPAIFVGGKFLGGIETLMA 92 (111)
Q Consensus 72 ~~vP~vfi~g~~igg~~~~~~ 92 (111)
..+|+++|||+.+.|..++.+
T Consensus 135 ~~tPt~~inG~~~~~~~~~~~ 155 (162)
T PF13462_consen 135 TGTPTFFINGKYVVGPYTIEE 155 (162)
T ss_dssp SSSSEEEETTCEEETTTSHHH
T ss_pred ccccEEEECCEEeCCCCCHHH
Confidence 899999999999987655444
No 190
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=97.46 E-value=0.0018 Score=37.25 Aligned_cols=69 Identities=19% Similarity=0.085 Sum_probs=49.8
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHH--HhCCCCCCcccEEEECCEEEeccHHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQ--LSSNGQHQTVPAIFVGGKFLGGIETLMACH 94 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~--~~g~~~~~~vP~vfi~g~~igg~~~~~~~~ 94 (111)
.++|..+..+-|.+++-+|.+.|++|+.+.++..++.. .+.. .... .++|++..||..+.....+..+.
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~----~~~~~~~~~~---g~vP~L~~~g~~l~ES~AI~~YL 72 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLE----KLKKDGSLMF---QQVPMVEIDGMKLVQTRAILNYI 72 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHH----hhccccCCCC---CCCCEEEECCEEEeeHHHHHHHH
Confidence 46888888899999999999999999988876422101 1111 1123 79999999998888777666654
No 191
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.45 E-value=0.00056 Score=45.04 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=21.3
Q ss_pred EEEEEeCCChhhHHHHHHHhhC---CCCcEEEEc
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL---GVGPTIVEL 49 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~---~v~~~~i~v 49 (111)
++.|+.+|||.|++..+.+.++ ++.+-.+++
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~ 100 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDY 100 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 4557799999999887777654 444444444
No 192
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.44 E-value=0.0015 Score=38.37 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=23.9
Q ss_pred EEEEEeCCChhhHHHHHHHhhC----C--CCcEEEEccCCcchHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL----G--VGPTIVELDHHVAGRE 57 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~----~--v~~~~i~v~~~~~~~~ 57 (111)
++.|+++|||.|.+..+.|.++ + -.+..+-|..+.+..+
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~ 49 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEE 49 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHH
Confidence 5568899999999877777653 3 4455555544444333
No 193
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.43 E-value=0.00062 Score=44.05 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=18.7
Q ss_pred cCCcEE-EEEeCCChhhHHHHHHHhh
Q 037432 15 SSNAVV-LFSISGCCMCTVAKRLLFS 39 (111)
Q Consensus 15 ~~~~vv-if~~~~Cp~C~~~~~~l~~ 39 (111)
+...++ -|+.+|||.|++..+.|.+
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHH
Confidence 334444 4779999999998888865
No 194
>PTZ00102 disulphide isomerase; Provisional
Probab=97.39 E-value=0.00029 Score=52.89 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=33.3
Q ss_pred EEEEEeCCChhhHHHHHHHhhCC--------CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLG--------VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF 78 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~--------v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf 78 (111)
++.|+.+||++|+...+.|.+.. +.+..+|.+.++. .....+. +.+|+++
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~-------~~~~~~v---~~~Pt~~ 436 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET-------PLEEFSW---SAFPTIL 436 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc-------chhcCCC---cccCeEE
Confidence 55688999999999998887642 2233445544432 4445566 8899873
No 195
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00041 Score=48.48 Aligned_cols=56 Identities=21% Similarity=0.279 Sum_probs=43.1
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCc-----EEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGP-----TIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFL 84 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~-----~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~i 84 (111)
+|=|+.+||..|.++.++|..+.-+| -.+|||+... .+.-+|. ...|++ |.||..|
T Consensus 25 ~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~-------taa~~gV---~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 25 VVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRG-------TAATNGV---NAMPTFIFFRNGVKI 87 (288)
T ss_pred EEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhc-------hhhhcCc---ccCceEEEEecCeEe
Confidence 45599999999999999999885544 5667776544 4556687 888986 7899765
No 196
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.0015 Score=44.45 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=51.3
Q ss_pred CChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 26 GCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 26 ~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
.||+|.++...|...+++|...-||...... ++...++. ..+|.+-.||+++-..+.+.+..+
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~----~f~~~sp~---~~~P~l~~d~~~~tDs~~Ie~~Le 82 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPE----WFLDISPG---GKPPVLKFDEKWVTDSDKIEEFLE 82 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcH----HHHhhCCC---CCCCeEEeCCceeccHHHHHHHHH
Confidence 5999999999999999988666555544433 58888887 999999999999999988877543
No 197
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.33 E-value=0.0017 Score=43.42 Aligned_cols=30 Identities=10% Similarity=0.370 Sum_probs=20.3
Q ss_pred EEEEEeCCChhhHHHHHHHh----hCCCCcEEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLF----SLGVGPTIVE 48 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~----~~~v~~~~i~ 48 (111)
++.|+.+|||.|++..+.+. +.++.+..+.
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 55688999999997666554 3455555454
No 198
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.29 E-value=0.00039 Score=50.00 Aligned_cols=70 Identities=20% Similarity=0.273 Sum_probs=47.1
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEE----EccCCcchHHHHHHHHHHhCCCCCCcccEE-EECCEE----Eecc--
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIV----ELDHHVAGREIQAVLFQLSSNGQHQTVPAI-FVGGKF----LGGI-- 87 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i----~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v-fi~g~~----igg~-- 87 (111)
.+=|+.|||.+|++..++.++.|.....+ .|...+..+- .+++...|. ...|+| |..|.+ .||-
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f--~aiAnefgi---qGYPTIk~~kgd~a~dYRG~R~K 121 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF--PAIANEFGI---QGYPTIKFFKGDHAIDYRGGREK 121 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc--hhhHhhhcc---CCCceEEEecCCeeeecCCCccH
Confidence 56689999999999999999987765433 3333332221 357778898 899998 566543 3544
Q ss_pred HHHHHH
Q 037432 88 ETLMAC 93 (111)
Q Consensus 88 ~~~~~~ 93 (111)
+++++.
T Consensus 122 d~iieF 127 (468)
T KOG4277|consen 122 DAIIEF 127 (468)
T ss_pred HHHHHH
Confidence 455554
No 199
>PLN02395 glutathione S-transferase
Probab=97.29 E-value=0.0019 Score=43.47 Aligned_cols=71 Identities=18% Similarity=0.112 Sum_probs=54.3
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcc-hHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVA-GREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~-~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
+++|+.+.|+ +.+++-+|.+.|++|+.+.++.... .. .+++.+.+.. .+||++..+|..+.....|.++..
T Consensus 3 ~~ly~~~~~~-~~rv~~~L~e~gl~~e~~~v~~~~~~~~--~~~~~~~nP~---g~vP~L~~~~~~l~ES~aI~~YL~ 74 (215)
T PLN02395 3 LKVYGPAFAS-PKRALVTLIEKGVEFETVPVDLMKGEHK--QPEYLALQPF---GVVPVIVDGDYKIFESRAIMRYYA 74 (215)
T ss_pred EEEEcCCcCc-HHHHHHHHHHcCCCceEEEeccccCCcC--CHHHHhhCCC---CCCCEEEECCEEEEcHHHHHHHHH
Confidence 6889877754 7999999999999999888764321 11 1247777777 999999999988888888777654
No 200
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0012 Score=43.15 Aligned_cols=72 Identities=14% Similarity=0.272 Sum_probs=41.1
Q ss_pred HHHHHhhcCCc--EEEEEeCCChhhHHHHHHHhhC---------CCCcEEEEccCC---------cchHHHHHHHHHHhC
Q 037432 8 EIVTHLASSNA--VVLFSISGCCMCTVAKRLLFSL---------GVGPTIVELDHH---------VAGREIQAVLFQLSS 67 (111)
Q Consensus 8 ~~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l~~~---------~v~~~~i~v~~~---------~~~~~~~~~l~~~~g 67 (111)
+..+.+.-..+ +.||.+++|+||.+.++-+... ++....+++... .+...-.++|++..+
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~ 112 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA 112 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc
Confidence 34444443444 7889999999999877655322 122222333211 111111246999999
Q ss_pred CCCCCcccEE-EECCE
Q 037432 68 NGQHQTVPAI-FVGGK 82 (111)
Q Consensus 68 ~~~~~~vP~v-fi~g~ 82 (111)
. ++.|++ |.|++
T Consensus 113 v---rstPtfvFfdk~ 125 (182)
T COG2143 113 V---RSTPTFVFFDKT 125 (182)
T ss_pred c---ccCceEEEEcCC
Confidence 8 999997 45553
No 201
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.25 E-value=0.0021 Score=45.07 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=22.1
Q ss_pred EEEEEeCCChhhHHHHHHHhhC----CCCcEEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL----GVGPTIVE 48 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~----~v~~~~i~ 48 (111)
|++|+-+.||||+++.+-+.++ ++++.++.
T Consensus 121 I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip 154 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQARPWVDSGKVQLRHIL 154 (251)
T ss_pred EEEEECCCChhHHHHHHHHHHHhhcCceEEEEEe
Confidence 8889999999999987776542 35555443
No 202
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.22 E-value=0.0013 Score=39.04 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=17.0
Q ss_pred cEEEEEeCCChhhHHHHHHHhhC
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSL 40 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~ 40 (111)
-++.|+.+|||+|.+....|.+.
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~~ 44 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEAL 44 (116)
T ss_pred EEEEeecccChhHHHHhHHHHHH
Confidence 36668899999999766666543
No 203
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.20 E-value=0.00079 Score=41.39 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=18.2
Q ss_pred cEEEEEeCCChhhHHHHHHHhhC
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSL 40 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~ 40 (111)
-++.|+.+|||+|+...+.|.++
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~~~ 45 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVNQL 45 (123)
T ss_pred EEEEEECCcChhhhhhChHHHHH
Confidence 36668899999999887777654
No 204
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=97.18 E-value=0.005 Score=41.60 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=50.8
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE-----CCE--EEeccHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV-----GGK--FLGGIETLM 91 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi-----~g~--~igg~~~~~ 91 (111)
+++|+.+ +|.|++++-+|.++|++|+.++++..... ...+++.+++.. ..||++.. ||. .+-...-|.
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~-~~~~~~~~iNP~---gkVP~L~~~~~~d~g~~~~L~ES~AI~ 76 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGG-QFRPEFLRISPN---NKIPAIVDHSPADGGEPLSLFESGAIL 76 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccc-cCCHHHHhhCcC---CCCCEEEeCCCCCCCCceeEEcHHHHH
Confidence 4688776 69999999999999999998888653221 011357778877 89999987 452 466666666
Q ss_pred HHH
Q 037432 92 ACH 94 (111)
Q Consensus 92 ~~~ 94 (111)
.+.
T Consensus 77 ~YL 79 (215)
T PRK13972 77 LYL 79 (215)
T ss_pred HHH
Confidence 654
No 205
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0025 Score=43.56 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=45.7
Q ss_pred CcEEEEEeCCChhhHHHHHHHhhCCCC--cEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEE
Q 037432 17 NAVVLFSISGCCMCTVAKRLLFSLGVG--PTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFL 84 (111)
Q Consensus 17 ~~vvif~~~~Cp~C~~~~~~l~~~~v~--~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~i 84 (111)
..|.||+..+|-.|-..-+.|++.|+. .++++....+. +.-..+. -++|.||+||+.+
T Consensus 11 ~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f-------~~~~~~V---~SvP~Vf~DGel~ 70 (265)
T COG5494 11 MEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPF-------LAFEKGV---ISVPSVFIDGELV 70 (265)
T ss_pred eEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChH-------HHhhcce---eecceEEEcCeEE
Confidence 358999999999999999999999874 45556555444 3334466 8999999999976
No 206
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.15 E-value=0.0062 Score=37.25 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=42.3
Q ss_pred HHHHHHHhhcCCc-EEE-EEeCCChhhHHHHH-HHhhCCC------CcEEEEccCC-cchHHHHHHHHHHhCCCCCCccc
Q 037432 6 TYEIVTHLASSNA-VVL-FSISGCCMCTVAKR-LLFSLGV------GPTIVELDHH-VAGREIQAVLFQLSSNGQHQTVP 75 (111)
Q Consensus 6 ~~~~~~~~~~~~~-vvi-f~~~~Cp~C~~~~~-~l~~~~v------~~~~i~v~~~-~~~~~~~~~l~~~~g~~~~~~vP 75 (111)
-.+.++.+.++++ +.+ +..+||++|+...+ +|.+-.+ .|..+.++.. ++.. .+...++. ..+|
T Consensus 6 ~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~----~~~~~~~~---~~~P 78 (114)
T cd02958 6 FEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQ----RFLQSYKV---DKYP 78 (114)
T ss_pred HHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHH----HHHHHhCc---cCCC
Confidence 3455555555555 444 55899999997643 5543322 3444444332 3433 47788888 8999
Q ss_pred EE-EE---CCEEE
Q 037432 76 AI-FV---GGKFL 84 (111)
Q Consensus 76 ~v-fi---~g~~i 84 (111)
++ |+ +|+.+
T Consensus 79 ~~~~i~~~~g~~l 91 (114)
T cd02958 79 HIAIIDPRTGEVL 91 (114)
T ss_pred eEEEEeCccCcEe
Confidence 98 45 45443
No 207
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.14 E-value=0.0024 Score=38.68 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=17.6
Q ss_pred EEEEEeCCChhhHHHHHHHhhC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL 40 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~ 40 (111)
++.|+.+|||.|+...+.+.++
T Consensus 25 vl~F~~~wC~~C~~~~p~l~~~ 46 (114)
T cd02967 25 LLFFLSPTCPVCKKLLPVIRSI 46 (114)
T ss_pred EEEEECCCCcchHhHhHHHHHH
Confidence 5568899999999887777654
No 208
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=97.14 E-value=0.0041 Score=35.42 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=44.3
Q ss_pred CCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 25 SGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 25 ~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
+.+|+|.++..+|+-.+++|+.+... ++. .+.. ..+|.+..+|+.+++++.+++..+
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~-n~~----------~sp~---gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSN-NPW----------RSPT---GKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecC-CCC----------CCCC---CccCEEEECCEEecChHHHHHHHH
Confidence 45899999999999999999765332 222 1233 689999999999999999888654
No 209
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.12 E-value=0.0031 Score=41.07 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=18.8
Q ss_pred CCcEEEEEeCCChhhHHHHHHHhh
Q 037432 16 SNAVVLFSISGCCMCTVAKRLLFS 39 (111)
Q Consensus 16 ~~~vvif~~~~Cp~C~~~~~~l~~ 39 (111)
...|+.|+...||+|.++.+.+.+
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~ 39 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEA 39 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHH
Confidence 445888999999999977766653
No 210
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.09 E-value=0.0036 Score=40.66 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=35.5
Q ss_pred EEEEEeCCChhhHHHHHHHhhC-------CCCcEEEEccCCcchHHH-----------------HHHHHHHhCCCCCCcc
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL-------GVGPTIVELDHHVAGREI-----------------QAVLFQLSSNGQHQTV 74 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~-------~v~~~~i~v~~~~~~~~~-----------------~~~l~~~~g~~~~~~v 74 (111)
++.|+.+|||+|+...+.|.+. ++.+-.++.+... .++ ...+.+.+|. ..+
T Consensus 65 ~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v---~~~ 139 (173)
T PRK03147 65 FLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETE--LAVKNFVNRYGLTFPVAIDKGRQVIDAYGV---GPL 139 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCH--HHHHHHHHHhCCCceEEECCcchHHHHcCC---CCc
Confidence 5668899999999766555433 2333334444322 111 1245566777 788
Q ss_pred cEEE-EC--CEEE
Q 037432 75 PAIF-VG--GKFL 84 (111)
Q Consensus 75 P~vf-i~--g~~i 84 (111)
|.+| +| |+.+
T Consensus 140 P~~~lid~~g~i~ 152 (173)
T PRK03147 140 PTTFLIDKDGKVV 152 (173)
T ss_pred CeEEEECCCCcEE
Confidence 9764 54 6654
No 211
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=97.08 E-value=0.012 Score=37.78 Aligned_cols=75 Identities=16% Similarity=0.273 Sum_probs=56.1
Q ss_pred CCcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCC-CCCcccEEEECCEEEecc---HHHH
Q 037432 16 SNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNG-QHQTVPAIFVGGKFLGGI---ETLM 91 (111)
Q Consensus 16 ~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~-~~~~vP~vfi~g~~igg~---~~~~ 91 (111)
...+++|..|+|.=|+.-.+.++..|++...++.+... .+++.+|++ .-.+==+..|||.+|-|. +++.
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~-------alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~ 97 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFL-------ALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIA 97 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHH-------HHHHhcCCChhhccccEEEEcCEEEeccCCHHHHH
Confidence 44689999999999999999999999988877766442 477777761 113445789999999998 5555
Q ss_pred HHHHcC
Q 037432 92 ACHING 97 (111)
Q Consensus 92 ~~~~~g 97 (111)
.+..++
T Consensus 98 ~ll~~~ 103 (149)
T COG3019 98 RLLAEK 103 (149)
T ss_pred HHHhCC
Confidence 555444
No 212
>smart00594 UAS UAS domain.
Probab=97.08 E-value=0.0034 Score=39.12 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=37.8
Q ss_pred HHHHHHHhhcCCc--EEEEEeCCChhhHHHHH-HHhhCCC------CcEEE--EccCCcchHHHHHHHHHHhCCCCCCcc
Q 037432 6 TYEIVTHLASSNA--VVLFSISGCCMCTVAKR-LLFSLGV------GPTIV--ELDHHVAGREIQAVLFQLSSNGQHQTV 74 (111)
Q Consensus 6 ~~~~~~~~~~~~~--vvif~~~~Cp~C~~~~~-~l~~~~v------~~~~i--~v~~~~~~~~~~~~l~~~~g~~~~~~v 74 (111)
..+.++.+.++.+ ++.+..+||++|+...+ +|.+..+ .|... |+... ++. .+...++. .++
T Consensus 16 ~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~-eg~----~l~~~~~~---~~~ 87 (122)
T smart00594 16 LEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTS-EGQ----RVSQFYKL---DSF 87 (122)
T ss_pred HHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCCh-hHH----HHHHhcCc---CCC
Confidence 4455555555544 44456899999986443 3433211 34433 44332 332 48888888 899
Q ss_pred cEEE
Q 037432 75 PAIF 78 (111)
Q Consensus 75 P~vf 78 (111)
|.+.
T Consensus 88 P~~~ 91 (122)
T smart00594 88 PYVA 91 (122)
T ss_pred CEEE
Confidence 9984
No 213
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.0024 Score=39.92 Aligned_cols=30 Identities=20% Similarity=0.167 Sum_probs=20.2
Q ss_pred CCChhhHHHHHHHhhC------CCCcEEEEccCCcc
Q 037432 25 SGCCMCTVAKRLLFSL------GVGPTIVELDHHVA 54 (111)
Q Consensus 25 ~~Cp~C~~~~~~l~~~------~v~~~~i~v~~~~~ 54 (111)
+|||+|.+|.+++.+. ++.+..+++...+.
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~ 78 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPY 78 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCc
Confidence 6999999998887653 34455556655443
No 214
>PRK11752 putative S-transferase; Provisional
Probab=96.98 E-value=0.006 Score=42.86 Aligned_cols=75 Identities=11% Similarity=0.071 Sum_probs=53.8
Q ss_pred cCCcEEEEEeCCChhhHHHHHHHhhC------CCCcEEEEccCCc-chHHHHHHHHHHhCCCCCCcccEEEECC----EE
Q 037432 15 SSNAVVLFSISGCCMCTVAKRLLFSL------GVGPTIVELDHHV-AGREIQAVLFQLSSNGQHQTVPAIFVGG----KF 83 (111)
Q Consensus 15 ~~~~vvif~~~~Cp~C~~~~~~l~~~------~v~~~~i~v~~~~-~~~~~~~~l~~~~g~~~~~~vP~vfi~g----~~ 83 (111)
..+++++|+.+ +|+|++++-+|.++ |++|+.+.++-.. +.. .+++.++... .+||++..++ ..
T Consensus 41 ~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~--~~e~~~iNP~---GkVP~Lv~~dg~~~~~ 114 (264)
T PRK11752 41 GKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQF--SSGFVEINPN---SKIPALLDRSGNPPIR 114 (264)
T ss_pred CCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCcccccc--CHHHHhhCCC---CCCCEEEeCCCCCCeE
Confidence 45578999854 99999999999996 8889887775422 111 1357777777 8999998752 46
Q ss_pred EeccHHHHHHHH
Q 037432 84 LGGIETLMACHI 95 (111)
Q Consensus 84 igg~~~~~~~~~ 95 (111)
+.....|..+..
T Consensus 115 L~ES~AIl~YL~ 126 (264)
T PRK11752 115 VFESGAILLYLA 126 (264)
T ss_pred EEcHHHHHHHHH
Confidence 777777766543
No 215
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=96.97 E-value=0.01 Score=34.04 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=43.8
Q ss_pred CCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 25 SGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 25 ~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
+..+.|.++.-+|+..|++|+.++.... . . .... ..+|.+..||+.+++..-+..+..
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~-~-------~--~~P~---GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANA-E-------F--MSPS---GKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCc-c-------c--cCCC---CcccEEEECCEEEeCHHHHHHHHh
Confidence 5678899999999999999988853211 1 0 1222 689999999999999988777643
No 216
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.93 E-value=0.0018 Score=41.13 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=21.7
Q ss_pred HHHHHHHhhcCCc--EEEEEeCCChhhHHHHHHH
Q 037432 6 TYEIVTHLASSNA--VVLFSISGCCMCTVAKRLL 37 (111)
Q Consensus 6 ~~~~~~~~~~~~~--vvif~~~~Cp~C~~~~~~l 37 (111)
..+.+..+.+.++ ++.|+++|||+|++.++..
T Consensus 12 ~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 12 YEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 3455555555555 4447789999999887654
No 217
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.90 E-value=0.0018 Score=42.27 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=27.5
Q ss_pred hhcCCcEEE-EEeCCChhhHHHHHHHhh----C---CCCcEEEEccCCcchHHH
Q 037432 13 LASSNAVVL-FSISGCCMCTVAKRLLFS----L---GVGPTIVELDHHVAGREI 58 (111)
Q Consensus 13 ~~~~~~vvi-f~~~~Cp~C~~~~~~l~~----~---~v~~~~i~v~~~~~~~~~ 58 (111)
.....-|.+ |+..|||.|+...+.|++ . +-+++.+=|+.+.+..++
T Consensus 30 ~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~ 83 (157)
T KOG2501|consen 30 ALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESL 83 (157)
T ss_pred hhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHH
Confidence 334433555 557999999955555443 2 445777767666555443
No 218
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.84 E-value=0.01 Score=36.30 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=48.5
Q ss_pred CCchhHHHHHHHhhc---CCcEEEEEeC-CChhhHHHHHHHhhC------CCCcEEEEccCCcchHHHHHHHHHHhCCCC
Q 037432 1 MKLEKTYEIVTHLAS---SNAVVLFSIS-GCCMCTVAKRLLFSL------GVGPTIVELDHHVAGREIQAVLFQLSSNGQ 70 (111)
Q Consensus 1 m~~~~~~~~~~~~~~---~~~vvif~~~-~Cp~C~~~~~~l~~~------~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~ 70 (111)
|+..++.+.+++++. ..+++||-.+ .||-...|..-|++. ++++.+++|-.. +.+-.++++.+|.
T Consensus 1 w~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~---R~vSn~IAe~~~V-- 75 (105)
T PF11009_consen 1 WKPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEY---RPVSNAIAEDFGV-- 75 (105)
T ss_dssp --E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGG---HHHHHHHHHHHT---
T ss_pred CCccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeC---chhHHHHHHHhCC--
Confidence 445566677777664 4568888854 599999888877654 278888888654 3344578999997
Q ss_pred CCcccEE--EECCEEEec
Q 037432 71 HQTVPAI--FVGGKFLGG 86 (111)
Q Consensus 71 ~~~vP~v--fi~g~~igg 86 (111)
.-.-||+ +-||+.+-.
T Consensus 76 ~HeSPQ~ili~~g~~v~~ 93 (105)
T PF11009_consen 76 KHESPQVILIKNGKVVWH 93 (105)
T ss_dssp ---SSEEEEEETTEEEEE
T ss_pred CcCCCcEEEEECCEEEEE
Confidence 3677887 458887643
No 219
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.79 E-value=0.005 Score=36.76 Aligned_cols=70 Identities=11% Similarity=0.166 Sum_probs=43.7
Q ss_pred cCCcEEEEEeC-CChhhH------HHHHHHhh--------CCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE
Q 037432 15 SSNAVVLFSIS-GCCMCT------VAKRLLFS--------LGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV 79 (111)
Q Consensus 15 ~~~~vvif~~~-~Cp~C~------~~~~~l~~--------~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi 79 (111)
...++++|+.. -|..|. ....||+. ..+.|+++||...+.....++....+-.- ..-.|.|.+
T Consensus 3 ~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~d--ey~YPlivv 80 (106)
T COG4837 3 NEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQD--EYFYPLIVV 80 (106)
T ss_pred ceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcc--cccceEEEE
Confidence 34568889975 588885 34455543 24556889997655544333333333332 267799999
Q ss_pred CCEEEec
Q 037432 80 GGKFLGG 86 (111)
Q Consensus 80 ~g~~igg 86 (111)
+|+.|+.
T Consensus 81 edeiVae 87 (106)
T COG4837 81 EDEIVAE 87 (106)
T ss_pred cceEeec
Confidence 9999864
No 220
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0054 Score=41.04 Aligned_cols=75 Identities=12% Similarity=0.160 Sum_probs=49.4
Q ss_pred cEEEE--EeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 18 AVVLF--SISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 18 ~vvif--~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
+-++| +++.|.+ +++-.|.=.+++|+++.|+-.....+.-.++++.... .+||++.+||.-+-..--++++.+
T Consensus 5 KpiLYSYWrSSCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm---~kVP~L~i~g~tl~eS~AII~YLe 79 (217)
T KOG0868|consen 5 KPILYSYWRSSCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM---EKVPTLVIDGLTLTESLAIIEYLE 79 (217)
T ss_pred cchhhhhhcccchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch---hhCCeEEECCEEeehHHHHHHHHH
Confidence 34454 4667765 5555666666776666554332222222368888887 899999999999888877777665
Q ss_pred cC
Q 037432 96 NG 97 (111)
Q Consensus 96 ~g 97 (111)
+-
T Consensus 80 Et 81 (217)
T KOG0868|consen 80 ET 81 (217)
T ss_pred hc
Confidence 43
No 221
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.77 E-value=0.0019 Score=46.49 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=45.0
Q ss_pred HHHHhhcCCcEEE--EEeCCChhhHHHHHHHhhCCCC----c-----EEEEccCCcchHHHHHHHHHHhCCCCCCcccEE
Q 037432 9 IVTHLASSNAVVL--FSISGCCMCTVAKRLLFSLGVG----P-----TIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI 77 (111)
Q Consensus 9 ~~~~~~~~~~vvi--f~~~~Cp~C~~~~~~l~~~~v~----~-----~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v 77 (111)
.+..++..+.+++ |+.+|||+++..+++|.+.... | ..=.||-+.+ ..++..+.+ ..+|++
T Consensus 5 N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-----~~ia~ky~I---~KyPTl 76 (375)
T KOG0912|consen 5 NIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-----DDIADKYHI---NKYPTL 76 (375)
T ss_pred cHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-----hHHhhhhcc---ccCcee
Confidence 4555666677554 8899999999999999875222 1 1223333322 348888887 788885
Q ss_pred --EECCEE
Q 037432 78 --FVGGKF 83 (111)
Q Consensus 78 --fi~g~~ 83 (111)
|.+|..
T Consensus 77 KvfrnG~~ 84 (375)
T KOG0912|consen 77 KVFRNGEM 84 (375)
T ss_pred eeeeccch
Confidence 889854
No 222
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=96.73 E-value=0.0046 Score=47.60 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=17.7
Q ss_pred EEEEEeCCChhhHHHHHHHhhC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL 40 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~ 40 (111)
++.|+.+|||.|++..+.|.++
T Consensus 60 vV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHH
Confidence 4458899999999988877654
No 223
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=96.70 E-value=0.03 Score=32.34 Aligned_cols=71 Identities=13% Similarity=-0.086 Sum_probs=46.1
Q ss_pred EEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHH-HHHHHHHH----hCCCCCCcccEEEECCEEEeccHHHHHHH
Q 037432 21 LFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGRE-IQAVLFQL----SSNGQHQTVPAIFVGGKFLGGIETLMACH 94 (111)
Q Consensus 21 if~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~-~~~~l~~~----~g~~~~~~vP~vfi~g~~igg~~~~~~~~ 94 (111)
+|+-..-+.|.+++-+|...|++|+.+.++....... -.+..... ... .++|++..||..+.-..-|..+.
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~---g~vP~L~~~g~~l~ES~AIl~YL 78 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF---PNLPYYIDGDVKLTQSNAILRYI 78 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC---CCCCEEEECCEEEeehHHHHHHH
Confidence 4444555788899999999999999888864331100 00111111 133 79999999998887777666654
No 224
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.62 E-value=0.011 Score=40.00 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=16.7
Q ss_pred CCcEEEEEeCCChhhHHHHHH
Q 037432 16 SNAVVLFSISGCCMCTVAKRL 36 (111)
Q Consensus 16 ~~~vvif~~~~Cp~C~~~~~~ 36 (111)
...|+.|+.-.||||.+..+.
T Consensus 38 ~~~VvEffdy~CphC~~~~~~ 58 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEV 58 (207)
T ss_pred CCeEEEEeCCCCccHHHhccc
Confidence 445888999999999986643
No 225
>PRK10542 glutathionine S-transferase; Provisional
Probab=96.48 E-value=0.013 Score=38.99 Aligned_cols=71 Identities=21% Similarity=0.244 Sum_probs=48.3
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE-CCEEEeccHHHHHHH
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV-GGKFLGGIETLMACH 94 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi-~g~~igg~~~~~~~~ 94 (111)
.+|+.+. +.+.+++-+|.+.|++|+.+.++.........+++.+.+.. ..||++.+ ||..+-....|.++.
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~---g~vPvL~~~~g~~l~eS~aI~~YL 73 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK---GQVPALLLDDGTLLTEGVAIMQYL 73 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC---CCCCeEEeCCCcEeecHHHHHHHH
Confidence 4566543 34678888999999999988776432110001247777777 99999986 667787777777754
No 226
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=96.45 E-value=0.012 Score=41.45 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=49.1
Q ss_pred cCCcEEEEEeC-------CChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEecc
Q 037432 15 SSNAVVLFSIS-------GCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGI 87 (111)
Q Consensus 15 ~~~~vvif~~~-------~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~ 87 (111)
+..-|.+|.-+ -.|+|-++..+|+..+++|+.++-.. ...+.. .++|-|=+||++|.+.
T Consensus 42 kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~-----------~~rSr~---G~lPFIELNGe~iaDS 107 (281)
T KOG4244|consen 42 KKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL-----------KRRSRN---GTLPFIELNGEHIADS 107 (281)
T ss_pred ccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc-----------eeeccC---CCcceEEeCCeecccc
Confidence 33345566532 26899999999999999999876553 223344 8999999999999999
Q ss_pred HHHHHH
Q 037432 88 ETLMAC 93 (111)
Q Consensus 88 ~~~~~~ 93 (111)
+-+...
T Consensus 108 ~~I~~~ 113 (281)
T KOG4244|consen 108 DLIEDR 113 (281)
T ss_pred HHHHHH
Confidence 877664
No 227
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.43 E-value=0.0081 Score=38.01 Aligned_cols=36 Identities=33% Similarity=0.297 Sum_probs=23.3
Q ss_pred EEEEEeC-CChhhHHHHHHHhhC-------CCCcEEEEccCCcc
Q 037432 19 VVLFSIS-GCCMCTVAKRLLFSL-------GVGPTIVELDHHVA 54 (111)
Q Consensus 19 vvif~~~-~Cp~C~~~~~~l~~~-------~v~~~~i~v~~~~~ 54 (111)
++.|+.+ |||.|+.....|.++ ++.+..+..+.++.
T Consensus 32 vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~ 75 (146)
T PF08534_consen 32 VVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP 75 (146)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH
T ss_pred EEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH
Confidence 5567788 999999766555443 45555555554443
No 228
>PTZ00057 glutathione s-transferase; Provisional
Probab=96.33 E-value=0.046 Score=36.75 Aligned_cols=73 Identities=10% Similarity=0.083 Sum_probs=52.2
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHH-HHHHHH--HHhCCCCCCcccEEEECCEEEeccHHHHHHH
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGRE-IQAVLF--QLSSNGQHQTVPAIFVGGKFLGGIETLMACH 94 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~-~~~~l~--~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~ 94 (111)
++++|+.+..+.|..++-+|...|++|+.+.++.... .- ..+.+. ..+.. ..+|++..||..+....-+..+.
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~-~~~~~~~~~~~~~nP~---g~vP~L~~~~~~l~eS~AI~~YL 79 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGD-AFIEFKNFKKEKDTPF---EQVPILEMDNIIFAQSQAIVRYL 79 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccch-HHHHHHhccccCCCCC---CCCCEEEECCEEEecHHHHHHHH
Confidence 4788988888899999999999999999887753221 10 001112 24455 89999999998888777666643
No 229
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.31 E-value=0.0065 Score=45.16 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=31.8
Q ss_pred EEEEEeCCChhhHHHHHHHhhC-----C----CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL-----G----VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV 79 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~-----~----v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi 79 (111)
++.|+.+||++|....+.+.+. + +.+-.+|++.++ +.. .+. ..+|++++
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--------~~~-~~i---~~~Pt~~~ 425 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--------VPP-FEV---EGFPTIKF 425 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--------cCC-CCc---cccCEEEE
Confidence 5568899999999888877653 2 233445554332 222 566 89998743
No 230
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=96.09 E-value=0.048 Score=33.76 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=16.4
Q ss_pred EEEEEeCCChhhHHHHHHHhhC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL 40 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~ 40 (111)
|+.|+.+|||.|.+..+.|.++
T Consensus 27 vl~F~a~~C~~C~~~~p~l~~l 48 (126)
T cd03012 27 LLDFWTYCCINCLHTLPYLTDL 48 (126)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 5557799999999776666543
No 231
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.01 E-value=0.036 Score=37.24 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=27.1
Q ss_pred cEEEEEeCCChhhHHHHHHHhhC---CCCc------EEEEccCC
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSL---GVGP------TIVELDHH 52 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~---~v~~------~~i~v~~~ 52 (111)
.++-|+.+|||.|+.-.+++.++ ++++ ..+++|+.
T Consensus 62 ~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 62 RVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred EEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 46679999999999888777654 6777 67777654
No 232
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=96.00 E-value=0.046 Score=34.40 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=37.6
Q ss_pred HHHHHHhhCCCCcEEEEccCCcch----HHHHHHHHHHhCCCCCCcccEEEECCEEE--eccHHHHHH
Q 037432 32 VAKRLLFSLGVGPTIVELDHHVAG----REIQAVLFQLSSNGQHQTVPAIFVGGKFL--GGIETLMAC 93 (111)
Q Consensus 32 ~~~~~l~~~~v~~~~i~v~~~~~~----~~~~~~l~~~~g~~~~~~vP~vfi~g~~i--gg~~~~~~~ 93 (111)
.+..+|++.|+....+++.++|.. ..+. .+.+..|. ..+|.++|||+.+ |.+-+..++
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~-~~L~~~G~---e~LPitlVdGeiv~~G~YPt~eEl 94 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVN-QLLQTEGA---EALPITLVDGEIVKTGRYPTNEEL 94 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHH-HHHHHH-G---GG-SEEEETTEEEEESS---HHHH
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHH-HHHHHcCc---ccCCEEEECCEEEEecCCCCHHHH
Confidence 666788889999999999988863 3333 44455676 8999999999875 666554443
No 233
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=95.98 E-value=0.0094 Score=41.37 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=40.9
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEE----E-----------EccCCcchHHHHHHHHHHhCCCCCCcccEEEECCE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTI----V-----------ELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGK 82 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~----i-----------~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~ 82 (111)
|.+|++.+|..|-.+-++|.++.-+... + |.-..++..+.|..+....|. .....|+.+++|+
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~-~~vyTPQavvnGr 122 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGA-RGVYTPQAVVNGR 122 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhcc-CCCCCchheeech
Confidence 5689999999999999999877332211 1 222233444555566666665 1146699999995
No 234
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.0095 Score=45.49 Aligned_cols=26 Identities=19% Similarity=0.232 Sum_probs=21.8
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCc
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGP 44 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~ 44 (111)
.+-|.+|||+||.+..+++++++-.|
T Consensus 388 LvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 388 LVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred EEEEcCcccchhhhhhhHHHHHHHHh
Confidence 55699999999999999999885544
No 235
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=95.93 E-value=0.035 Score=35.64 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=14.5
Q ss_pred EEEEEeCCChhhHHHHHHHhh
Q 037432 19 VVLFSISGCCMCTVAKRLLFS 39 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~ 39 (111)
++.|+.+||| |.+-.+.|.+
T Consensus 26 vl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHH
Confidence 4458899999 9876555554
No 236
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.92 E-value=0.02 Score=33.39 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=16.0
Q ss_pred EEeCCChhhHHHHHHHhhC
Q 037432 22 FSISGCCMCTVAKRLLFSL 40 (111)
Q Consensus 22 f~~~~Cp~C~~~~~~l~~~ 40 (111)
|+++|||+|....+.|.+.
T Consensus 39 f~~~~C~~C~~~~~~l~~~ 57 (127)
T COG0526 39 FWAPWCPPCRAEAPLLEEL 57 (127)
T ss_pred EEcCcCHHHHhhchhHHHH
Confidence 4699999999998888765
No 237
>PLN02412 probable glutathione peroxidase
Probab=95.92 E-value=0.063 Score=35.16 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=29.4
Q ss_pred EEEEEeCCChhhHHHHHHHhh-------CCCCcEEEEccC----C-cchHHHHHHHHHHhCCCCCCcccEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFS-------LGVGPTIVELDH----H-VAGREIQAVLFQLSSNGQHQTVPAIF 78 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~-------~~v~~~~i~v~~----~-~~~~~~~~~l~~~~g~~~~~~vP~vf 78 (111)
++.|+.+|||.|.+-.+.|.+ .|+.+--+..+. . ....++.+.+.+..| .++|.+.
T Consensus 33 lv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~----~~fpvl~ 100 (167)
T PLN02412 33 LIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFK----AEFPIFD 100 (167)
T ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccC----CCCceEe
Confidence 444779999999964444433 244444444332 1 123344445555555 3566653
No 238
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.057 Score=37.17 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=57.2
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHH
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHI 95 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~ 95 (111)
++++|+.+.-|.|+++...++..|++++.+.++.... ....+++...... .+||++.-+|-.+-....|..+..
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~g-e~~~pefl~~nP~---~kVP~l~d~~~~l~eS~AI~~Yl~ 75 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKG-EQKSPEFLKLNPL---GKVPALEDGGLTLWESHAILRYLA 75 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeecccc-ccCCHHHHhcCcC---CCCCeEecCCeEEeeHHHHHHHHH
Confidence 4679999999999999999999999998886653211 1111357778888 999999999888888877766543
No 239
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.83 E-value=0.033 Score=43.15 Aligned_cols=67 Identities=10% Similarity=0.075 Sum_probs=44.4
Q ss_pred chhHHHHHHHhhc--CCc--EEEEEeCCChhhHHHHHHHhhC-----CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCc
Q 037432 3 LEKTYEIVTHLAS--SNA--VVLFSISGCCMCTVAKRLLFSL-----GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQT 73 (111)
Q Consensus 3 ~~~~~~~~~~~~~--~~~--vvif~~~~Cp~C~~~~~~l~~~-----~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~ 73 (111)
.++.++.+++.+. .++ +.+|+.+.|++|..++++|++. .++++.+|...+. .+.+.+|. ..
T Consensus 350 ~~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~-------~~~~~~~v---~~ 419 (555)
T TIGR03143 350 DDSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEP-------ESETLPKI---TK 419 (555)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccch-------hhHhhcCC---Cc
Confidence 3455566666543 234 5568888999999999999886 2344444443332 36677887 78
Q ss_pred ccEEEE
Q 037432 74 VPAIFV 79 (111)
Q Consensus 74 vP~vfi 79 (111)
+|.+.+
T Consensus 420 ~P~~~i 425 (555)
T TIGR03143 420 LPTVAL 425 (555)
T ss_pred CCEEEE
Confidence 899865
No 240
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.76 E-value=0.034 Score=39.36 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=49.0
Q ss_pred EEEEEeCCChhhHHHHHHHhhC-----CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEEeccHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL-----GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFLGGIETLM 91 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~-----~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~igg~~~~~ 91 (111)
|+-|+.+++|.|..+-..|..+ .++|-.+.....+ +...+.. ..+|+| |.+|..++.+-.+.
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~--------~~~~f~~---~~LPtllvYk~G~l~~~~V~l~ 218 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP--------ASENFPD---KNLPTLLVYKNGDLIGNFVGLT 218 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC--------TTTTS-T---TC-SEEEEEETTEEEEEECTGG
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC--------cccCCcc---cCCCEEEEEECCEEEEeEEehH
Confidence 4447789999999888888765 3344434443322 1123444 789997 67998877664443
Q ss_pred HH----HHcCChHHHHHhcCcc
Q 037432 92 AC----HINGTLVPLLKDAGAL 109 (111)
Q Consensus 92 ~~----~~~g~L~~~l~~~g~~ 109 (111)
+. .....|+.+|...|+|
T Consensus 219 ~~~g~df~~~dlE~~L~~~G~l 240 (265)
T PF02114_consen 219 DLLGDDFFTEDLEAFLIEYGVL 240 (265)
T ss_dssp GCT-TT--HHHHHHHHHTTTSS
T ss_pred HhcCCCCCHHHHHHHHHHcCCC
Confidence 32 2233699999999987
No 241
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.76 E-value=0.016 Score=36.01 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=26.4
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEE
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVE 48 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~ 48 (111)
.+++|++|.|+-|..+..+|+++.-+|+.+.
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY~ilr 34 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEYDILR 34 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhccccEEE
Confidence 4789999999999999999998877775543
No 242
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=95.73 E-value=0.063 Score=34.98 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=14.5
Q ss_pred EEEEEeCCChhhHHHHHHHhh
Q 037432 19 VVLFSISGCCMCTVAKRLLFS 39 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~ 39 (111)
++.|..+|||.|.+...-|.+
T Consensus 29 ll~f~~t~Cp~c~~~~~~l~~ 49 (171)
T cd02969 29 VVMFICNHCPYVKAIEDRLNR 49 (171)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 555778999999855444443
No 243
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.69 E-value=0.047 Score=45.47 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=17.6
Q ss_pred EEEEEeCCChhhHHHHHHHhhC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSL 40 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~ 40 (111)
++-|+.+|||.|+...+.|+++
T Consensus 424 ll~FWAsWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 424 ILDFWTYCCINCMHVLPDLEFL 445 (1057)
T ss_pred EEEEECCcChhHHhHhHHHHHH
Confidence 4448899999999888877654
No 244
>PTZ00056 glutathione peroxidase; Provisional
Probab=95.62 E-value=0.05 Score=36.79 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=14.9
Q ss_pred EEEEEeCCChhhHHHHHHHhh
Q 037432 19 VVLFSISGCCMCTVAKRLLFS 39 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~ 39 (111)
++.|+.+|||.|.+-.+.|.+
T Consensus 43 lv~fwAswC~~C~~e~p~L~~ 63 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNR 63 (199)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 445889999999865544443
No 245
>PTZ00256 glutathione peroxidase; Provisional
Probab=95.57 E-value=0.051 Score=36.10 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=13.8
Q ss_pred EEEEeCCChhhHHHHHHHh
Q 037432 20 VLFSISGCCMCTVAKRLLF 38 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~ 38 (111)
++++.+|||.|.+-.+.|.
T Consensus 46 v~n~atwCp~C~~e~p~l~ 64 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLV 64 (183)
T ss_pred EEEECCCCCchHHHHHHHH
Confidence 3568999999997554444
No 246
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=95.52 E-value=0.091 Score=34.64 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=31.7
Q ss_pred HHHHhhcCCc-EEE-EEeCCChhhHHHHH-HHhhC------CCCcEEE--EccCCcchHHHH-HHHHHHhCCCCCCcccE
Q 037432 9 IVTHLASSNA-VVL-FSISGCCMCTVAKR-LLFSL------GVGPTIV--ELDHHVAGREIQ-AVLFQLSSNGQHQTVPA 76 (111)
Q Consensus 9 ~~~~~~~~~~-vvi-f~~~~Cp~C~~~~~-~l~~~------~v~~~~i--~v~~~~~~~~~~-~~l~~~~g~~~~~~vP~ 76 (111)
.++++-++++ |.+ ++.++|.+|+.+.. .|.+. +-.|..| |.++.|+-.... ......+|. ..+|.
T Consensus 29 a~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~---gGwPl 105 (163)
T PF03190_consen 29 ALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGS---GGWPL 105 (163)
T ss_dssp HHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS------SSE
T ss_pred HHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCC---CCCCc
Confidence 3444444444 444 55899999995553 44332 2234444 445555543332 233445576 77887
Q ss_pred E-EE--CCEEE
Q 037432 77 I-FV--GGKFL 84 (111)
Q Consensus 77 v-fi--~g~~i 84 (111)
. |+ +|+.+
T Consensus 106 ~vfltPdg~p~ 116 (163)
T PF03190_consen 106 TVFLTPDGKPF 116 (163)
T ss_dssp EEEE-TTS-EE
T ss_pred eEEECCCCCee
Confidence 5 43 55554
No 247
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=95.44 E-value=0.034 Score=33.85 Aligned_cols=21 Identities=24% Similarity=0.361 Sum_probs=13.4
Q ss_pred EEEEEeC-CChhhHHHHHHHhh
Q 037432 19 VVLFSIS-GCCMCTVAKRLLFS 39 (111)
Q Consensus 19 vvif~~~-~Cp~C~~~~~~l~~ 39 (111)
++.|+.+ |||+|.....-|.+
T Consensus 29 vl~f~~~~~c~~c~~~l~~l~~ 50 (124)
T PF00578_consen 29 VLFFWPTAWCPFCQAELPELNE 50 (124)
T ss_dssp EEEEESTTTSHHHHHHHHHHHH
T ss_pred EEEEeCccCccccccchhHHHH
Confidence 4456666 99999755544443
No 248
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.038 Score=41.04 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=46.7
Q ss_pred hhHHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhC---CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEEC
Q 037432 4 EKTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSL---GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVG 80 (111)
Q Consensus 4 ~~~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~---~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~ 80 (111)
++..++++.+-..-.+.-|.+-.|..|..+.+.|.-+ +-+..-.-||-. -.+++.. .-+. ..||++|+|
T Consensus 105 q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa----~Fq~Eve-ar~I---MaVPtvfln 176 (520)
T COG3634 105 QDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGA----LFQDEVE-ARNI---MAVPTVFLN 176 (520)
T ss_pred HHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecch----hhHhHHH-hccc---eecceEEEc
Confidence 4455666666556667778887777777666666544 333333344422 1222333 3366 999999999
Q ss_pred CEEEecc
Q 037432 81 GKFLGGI 87 (111)
Q Consensus 81 g~~igg~ 87 (111)
|+.+|.-
T Consensus 177 Ge~fg~G 183 (520)
T COG3634 177 GEEFGQG 183 (520)
T ss_pred chhhccc
Confidence 9988753
No 249
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=95.37 E-value=0.049 Score=34.21 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=14.3
Q ss_pred EEEEE-eCCChhhHHHHHHHhh
Q 037432 19 VVLFS-ISGCCMCTVAKRLLFS 39 (111)
Q Consensus 19 vvif~-~~~Cp~C~~~~~~l~~ 39 (111)
+++|. .+|||.|+.-..-|.+
T Consensus 27 vl~f~~~~~Cp~C~~~~~~l~~ 48 (149)
T cd02970 27 VVVFYRGFGCPFCREYLRALSK 48 (149)
T ss_pred EEEEECCCCChhHHHHHHHHHH
Confidence 44454 7899999875555544
No 250
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=95.34 E-value=0.098 Score=32.67 Aligned_cols=20 Identities=25% Similarity=0.427 Sum_probs=14.3
Q ss_pred EEEEEeCCChh-hHHHHHHHh
Q 037432 19 VVLFSISGCCM-CTVAKRLLF 38 (111)
Q Consensus 19 vvif~~~~Cp~-C~~~~~~l~ 38 (111)
++.|+.+|||. |.+....|.
T Consensus 26 vl~f~~~~C~~~C~~~l~~l~ 46 (142)
T cd02968 26 LVYFGYTHCPDVCPTTLANLA 46 (142)
T ss_pred EEEEEcCCCcccCHHHHHHHH
Confidence 56678899998 985544443
No 251
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.025 Score=41.81 Aligned_cols=58 Identities=22% Similarity=0.185 Sum_probs=38.7
Q ss_pred CCcEEEEEeCCChhhHHHHHHHhhCC----CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECC
Q 037432 16 SNAVVLFSISGCCMCTVAKRLLFSLG----VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGG 81 (111)
Q Consensus 16 ~~~vvif~~~~Cp~C~~~~~~l~~~~----v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g 81 (111)
..-++.|..|||++|.+..+.+.+.. -......||.... ..+.+.++. ..+|++ |-.|
T Consensus 48 ~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~-----~~~~~~y~i---~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 48 SPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH-----KDLCEKYGI---QGFPTLKVFRPG 111 (383)
T ss_pred CceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh-----HHHHHhcCC---ccCcEEEEEcCC
Confidence 34488899999999998777776541 1223334443333 248888898 999998 4455
No 252
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.24 E-value=0.022 Score=44.18 Aligned_cols=89 Identities=19% Similarity=0.235 Sum_probs=50.8
Q ss_pred HHHHhhcCCc---EEE-EEeCCChhhHHHHHHHhh--------CCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccE
Q 037432 9 IVTHLASSNA---VVL-FSISGCCMCTVAKRLLFS--------LGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPA 76 (111)
Q Consensus 9 ~~~~~~~~~~---vvi-f~~~~Cp~C~~~~~~l~~--------~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~ 76 (111)
++++..++++ |.+ |+.+||-.|+..++..-. .++..-..|+..++. +++ ++.+..|. -.+|.
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p--~~~-~lLk~~~~---~G~P~ 537 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDP--AIT-ALLKRLGV---FGVPT 537 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCH--HHH-HHHHHcCC---CCCCE
Confidence 5666655554 444 999999999977665432 244444556654332 233 45566787 89998
Q ss_pred EE-EC--CEEEeccHHHHHHHHcCChHHHHHhc
Q 037432 77 IF-VG--GKFLGGIETLMACHINGTLVPLLKDA 106 (111)
Q Consensus 77 vf-i~--g~~igg~~~~~~~~~~g~L~~~l~~~ 106 (111)
++ .+ |+..-. +-...+++.+.+.|+++
T Consensus 538 ~~ff~~~g~e~~~---l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 538 YLFFGPQGSEPEI---LTGFLTADAFLEHLERA 567 (569)
T ss_pred EEEECCCCCcCcC---CcceecHHHHHHHHHHh
Confidence 74 44 332222 33334455566666554
No 253
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=95.23 E-value=0.27 Score=27.79 Aligned_cols=69 Identities=20% Similarity=0.267 Sum_probs=46.2
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCc-chHHHHHHHHHHhCCCCCCcccEEEEC-CEEEeccHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHV-AGREIQAVLFQLSSNGQHQTVPAIFVG-GKFLGGIETLMAC 93 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~-~~~~~~~~l~~~~g~~~~~~vP~vfi~-g~~igg~~~~~~~ 93 (111)
+.+|..++ .|..++-+|...|++|+.+.++... +... +++.+.... -..+|.+..+ |..+-..-.|..+
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~--~e~~~~~p~--~g~vP~l~~~~~~~l~es~AI~~Y 73 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKS--PEFLAINPM--FGKVPALEDGDGFVLTESNAILRY 73 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGS--HHHHHHTTT--SSSSSEEEETTTEEEESHHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecccccccc--hhhhhcccc--cceeeEEEECCCCEEEcHHHHHHH
Confidence 45566566 8889999999999999888776422 2211 245554442 1589999999 9888877766654
No 254
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.18 E-value=0.0034 Score=43.50 Aligned_cols=66 Identities=21% Similarity=0.287 Sum_probs=47.1
Q ss_pred HHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhC-------CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE--
Q 037432 8 EIVTHLASSNAVVLFSISGCCMCTVAKRLLFSL-------GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF-- 78 (111)
Q Consensus 8 ~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~-------~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf-- 78 (111)
+....+++..=.+.|..+|||.|......+..+ +|..-++|+..++- |.-+.-. ...|+|+
T Consensus 32 enw~~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg-------LsGRF~v---taLptIYHv 101 (248)
T KOG0913|consen 32 ENWKELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG-------LSGRFLV---TALPTIYHV 101 (248)
T ss_pred cchhhhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc-------cceeeEE---EecceEEEe
Confidence 445555555557789999999999999888765 56667888877765 3323322 6789995
Q ss_pred ECCEE
Q 037432 79 VGGKF 83 (111)
Q Consensus 79 i~g~~ 83 (111)
.||++
T Consensus 102 kDGeF 106 (248)
T KOG0913|consen 102 KDGEF 106 (248)
T ss_pred ecccc
Confidence 78865
No 255
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=95.09 E-value=0.12 Score=29.40 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=42.7
Q ss_pred CChhhHHHHHHHhhCCCC---cEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE-CCEEEeccHHHHHHH
Q 037432 26 GCCMCTVAKRLLFSLGVG---PTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV-GGKFLGGIETLMACH 94 (111)
Q Consensus 26 ~Cp~C~~~~~~l~~~~v~---~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi-~g~~igg~~~~~~~~ 94 (111)
--|.|-++..+|+-.+.+ ++.+.... +. .+.. ..+|.+.. +|+.+.|+.+|+++.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-~~----------~Spt---g~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-PW----------LSPT---GELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC-CC----------cCCC---CCCCEEEECCCcEEECHHHHHHhh
Confidence 478999999999999988 55544432 22 2233 78999999 999999999998864
No 256
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=95.01 E-value=0.13 Score=35.85 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=20.2
Q ss_pred EEEEEeCCChhhHHHHHHHhh-------CCCCcEEEEcc
Q 037432 19 VVLFSISGCCMCTVAKRLLFS-------LGVGPTIVELD 50 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~-------~~v~~~~i~v~ 50 (111)
|+.|+.+|||.|..-.+.|.+ .|+.+--++.+
T Consensus 103 vl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 103 LIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred EEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 556889999999865544433 34555445543
No 257
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=94.90 E-value=0.12 Score=33.10 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=14.6
Q ss_pred EEEEEeCCChhhHHHHHHHh
Q 037432 19 VVLFSISGCCMCTVAKRLLF 38 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~ 38 (111)
++.|..+|||+|.+-.+-|.
T Consensus 26 vv~~~as~C~~c~~~~~~l~ 45 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRALQ 45 (153)
T ss_pred EEEEeCCCCCchhhhHHHHH
Confidence 56688999999986554333
No 258
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=94.50 E-value=0.14 Score=31.82 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=12.7
Q ss_pred EEEEE-eCCChhhHHHHHHHh
Q 037432 19 VVLFS-ISGCCMCTVAKRLLF 38 (111)
Q Consensus 19 vvif~-~~~Cp~C~~~~~~l~ 38 (111)
++.|+ ..|||.|.....-|.
T Consensus 26 ll~f~~~~~c~~C~~~~~~l~ 46 (140)
T cd02971 26 VLFFYPKDFTPVCTTELCAFR 46 (140)
T ss_pred EEEEeCCCCCCcCHHHHHHHH
Confidence 44445 579999986544443
No 259
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=94.47 E-value=0.12 Score=32.66 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=13.1
Q ss_pred EEEEE-eCCChhhHHHHHHHh
Q 037432 19 VVLFS-ISGCCMCTVAKRLLF 38 (111)
Q Consensus 19 vvif~-~~~Cp~C~~~~~~l~ 38 (111)
|++|+ .+|||.|.+..+.|.
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~ 52 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALR 52 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHH
Confidence 34454 789999985554444
No 260
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=94.33 E-value=0.18 Score=33.61 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=20.8
Q ss_pred CCcEEEEE--eCCChhhHHHHHH-------HhhCCCCcEEEEccC
Q 037432 16 SNAVVLFS--ISGCCMCTVAKRL-------LFSLGVGPTIVELDH 51 (111)
Q Consensus 16 ~~~vvif~--~~~Cp~C~~~~~~-------l~~~~v~~~~i~v~~ 51 (111)
.+.+++|+ ..|||.|..-... |.+.++.+--+.+|.
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~ 75 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDT 75 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 34455544 6899999854333 334466555555443
No 261
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=94.13 E-value=0.25 Score=30.70 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=11.6
Q ss_pred EEEEE-eCCChhhHHHHHHH
Q 037432 19 VVLFS-ISGCCMCTVAKRLL 37 (111)
Q Consensus 19 vvif~-~~~Cp~C~~~~~~l 37 (111)
++.|+ +.|||.|.....-|
T Consensus 27 ll~f~~~~~cp~C~~~~~~l 46 (140)
T cd03017 27 VLYFYPKDDTPGCTKEACDF 46 (140)
T ss_pred EEEEeCCCCCCchHHHHHHH
Confidence 33444 57899997543333
No 262
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=94.09 E-value=0.15 Score=31.97 Aligned_cols=23 Identities=13% Similarity=0.037 Sum_probs=14.3
Q ss_pred CcEE-EEEeCC-ChhhHHHHHHHhh
Q 037432 17 NAVV-LFSISG-CCMCTVAKRLLFS 39 (111)
Q Consensus 17 ~~vv-if~~~~-Cp~C~~~~~~l~~ 39 (111)
++++ .|+.+| ||+|.+-...|.+
T Consensus 27 k~vvl~f~~~~~c~~C~~e~~~l~~ 51 (143)
T cd03014 27 KVKVISVFPSIDTPVCATQTKRFNK 51 (143)
T ss_pred CeEEEEEEcCCCCCcCHHHHHHHHH
Confidence 3444 455656 7999876655543
No 263
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=94.09 E-value=0.15 Score=32.48 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=35.5
Q ss_pred CChhhHHHHHHHhhC----C---CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEEecc
Q 037432 26 GCCMCTVAKRLLFSL----G---VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFLGGI 87 (111)
Q Consensus 26 ~Cp~C~~~~~~l~~~----~---v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~igg~ 87 (111)
.+|-+..+--+|.++ + +.+-.+|+|..+ .+...+|. .++|++ |-||+.+|..
T Consensus 47 r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~-------~LA~~fgV---~siPTLl~FkdGk~v~~i 107 (132)
T PRK11509 47 RTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE-------AIGDRFGV---FRFPATLVFTGGNYRGVL 107 (132)
T ss_pred cCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH-------HHHHHcCC---ccCCEEEEEECCEEEEEE
Confidence 477776655555443 3 345556666553 39999999 999997 7799987655
No 264
>PRK13190 putative peroxiredoxin; Provisional
Probab=93.98 E-value=0.17 Score=34.24 Aligned_cols=34 Identities=24% Similarity=0.193 Sum_probs=19.3
Q ss_pred cEEE--EEeCCChhhHHHHHHHh-------hCCCCcEEEEccC
Q 037432 18 AVVL--FSISGCCMCTVAKRLLF-------SLGVGPTIVELDH 51 (111)
Q Consensus 18 ~vvi--f~~~~Cp~C~~~~~~l~-------~~~v~~~~i~v~~ 51 (111)
.+++ |..+|||.|..-...|. +.++..--+.+|.
T Consensus 29 ~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~ 71 (202)
T PRK13190 29 WVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDS 71 (202)
T ss_pred EEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4554 45789999985433333 3455554444443
No 265
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=93.90 E-value=0.21 Score=30.29 Aligned_cols=71 Identities=13% Similarity=0.195 Sum_probs=44.1
Q ss_pred EEEeCCChhhHHHHHHHhhCCC--CcEEEEccCCcchHHHHHHHHHHhCCC--CCCcccEEEECCE-EEeccHHHHHHHH
Q 037432 21 LFSISGCCMCTVAKRLLFSLGV--GPTIVELDHHVAGREIQAVLFQLSSNG--QHQTVPAIFVGGK-FLGGIETLMACHI 95 (111)
Q Consensus 21 if~~~~Cp~C~~~~~~l~~~~v--~~~~i~v~~~~~~~~~~~~l~~~~g~~--~~~~vP~vfi~g~-~igg~~~~~~~~~ 95 (111)
+|+-..||.|.....++...+- .+..+++...+... +.+..|.+ ...+.-.+.-+|+ ...|.+-+..+..
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~ 75 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQA-----LLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLR 75 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhh-----HHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHH
Confidence 4566889999999999998864 56777774433311 22222220 0123333334776 8999998887765
Q ss_pred c
Q 037432 96 N 96 (111)
Q Consensus 96 ~ 96 (111)
.
T Consensus 76 ~ 76 (114)
T PF04134_consen 76 R 76 (114)
T ss_pred H
Confidence 4
No 266
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=93.88 E-value=0.34 Score=30.72 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=45.5
Q ss_pred hhHHHHHHHhhc--CCcE-EE-EEeCCChhhHHHHHHHhhCC--C-Cc---EEEEccCCcchHHHHHHHHHHhCCCCCCc
Q 037432 4 EKTYEIVTHLAS--SNAV-VL-FSISGCCMCTVAKRLLFSLG--V-GP---TIVELDHHVAGREIQAVLFQLSSNGQHQT 73 (111)
Q Consensus 4 ~~~~~~~~~~~~--~~~v-vi-f~~~~Cp~C~~~~~~l~~~~--v-~~---~~i~v~~~~~~~~~~~~l~~~~g~~~~~~ 73 (111)
.++...+.+++. ..++ |+ |+.+|-|-|.+.-.+|.+.. + +| -.+|+++.++ +.+.++. ..
T Consensus 8 L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~-------~~~~~~l---~~ 77 (142)
T KOG3414|consen 8 LHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPD-------FVKMYEL---YD 77 (142)
T ss_pred cccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhh-------hhhhhcc---cC
Confidence 455666777653 2333 33 99999999999999998752 2 23 3456665544 6667776 55
Q ss_pred ccEE--EECCEEE
Q 037432 74 VPAI--FVGGKFL 84 (111)
Q Consensus 74 vP~v--fi~g~~i 84 (111)
.|++ |.+++++
T Consensus 78 p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 78 PPTVMFFFNNKHM 90 (142)
T ss_pred CceEEEEEcCceE
Confidence 5554 6777653
No 267
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.57 Score=32.07 Aligned_cols=70 Identities=16% Similarity=0.019 Sum_probs=55.3
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHH
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACH 94 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~ 94 (111)
...++.-+....|..++.+|.-.|++|+...+...... ..++..+.. .++|.+-|||..+...-.+..+.
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w----~~~K~~~pf---gqlP~l~vDg~~i~QS~AI~RyL 72 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAW----EELKDKMPF---GQLPVLEVDGKKLVQSRAILRYL 72 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccch----hhhcccCCC---CCCCEEeECCEeeccHHHHHHHH
Confidence 34566667888999999999999999999988766541 236666677 89999999999998877666653
No 268
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=93.50 E-value=0.34 Score=31.69 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=19.9
Q ss_pred CcEEEEE--eCCChhhHHHHHHHhh-------CCCCcEEEEcc
Q 037432 17 NAVVLFS--ISGCCMCTVAKRLLFS-------LGVGPTIVELD 50 (111)
Q Consensus 17 ~~vvif~--~~~Cp~C~~~~~~l~~-------~~v~~~~i~v~ 50 (111)
+.+++++ .+|||.|......|.+ .++.+..+.+|
T Consensus 30 k~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d 72 (173)
T cd03015 30 KWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD 72 (173)
T ss_pred CEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 4455544 6899999865544433 35555445444
No 269
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.42 E-value=0.27 Score=33.38 Aligned_cols=93 Identities=19% Similarity=0.289 Sum_probs=53.8
Q ss_pred HHHHHHhhcCCcEEE-EEeCCChhhHHH---HHHHhhCCCCcEEE--EccCCcchHHHHHHHHHHhCCCCCCcccEE--E
Q 037432 7 YEIVTHLASSNAVVL-FSISGCCMCTVA---KRLLFSLGVGPTIV--ELDHHVAGREIQAVLFQLSSNGQHQTVPAI--F 78 (111)
Q Consensus 7 ~~~~~~~~~~~~vvi-f~~~~Cp~C~~~---~~~l~~~~v~~~~i--~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--f 78 (111)
.+++....+..+||+ |+.+.---|.-+ ...|....+.-.++ +....|- |....++ ..+|+| |
T Consensus 75 kdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PF-------lv~kL~I---kVLP~v~l~ 144 (211)
T KOG1672|consen 75 KDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPF-------LVTKLNI---KVLPTVALF 144 (211)
T ss_pred HHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCce-------eeeeeee---eEeeeEEEE
Confidence 345555545556555 888875566544 44555555554555 4455544 7778898 999997 7
Q ss_pred ECCE---EEeccHHHHHH--HHcCChHHHHHhcCcc
Q 037432 79 VGGK---FLGGIETLMAC--HINGTLVPLLKDAGAL 109 (111)
Q Consensus 79 i~g~---~igg~~~~~~~--~~~g~L~~~l~~~g~~ 109 (111)
.||. ++-||.++=.- +.-..|+..|-..|+|
T Consensus 145 k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S~vi 180 (211)
T KOG1672|consen 145 KNGKTVDYVVGFTDLGNKDDFTTETLENRLAKSGVI 180 (211)
T ss_pred EcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhccce
Confidence 8985 45666554221 1122355555555543
No 270
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=93.30 E-value=0.26 Score=33.31 Aligned_cols=35 Identities=14% Similarity=0.023 Sum_probs=21.0
Q ss_pred CcEEE--EEeCCChhhHHHHH-------HHhhCCCCcEEEEccC
Q 037432 17 NAVVL--FSISGCCMCTVAKR-------LLFSLGVGPTIVELDH 51 (111)
Q Consensus 17 ~~vvi--f~~~~Cp~C~~~~~-------~l~~~~v~~~~i~v~~ 51 (111)
+.+++ |..+|||.|..-.. -|++.|+.+--+.+|.
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 34554 44789999985433 3444566655555554
No 271
>PRK13599 putative peroxiredoxin; Provisional
Probab=93.06 E-value=0.29 Score=33.51 Aligned_cols=37 Identities=16% Similarity=0.072 Sum_probs=20.9
Q ss_pred CCcEEE--EEeCCChhhHHHH-------HHHhhCCCCcEEEEccCC
Q 037432 16 SNAVVL--FSISGCCMCTVAK-------RLLFSLGVGPTIVELDHH 52 (111)
Q Consensus 16 ~~~vvi--f~~~~Cp~C~~~~-------~~l~~~~v~~~~i~v~~~ 52 (111)
...+++ |..+|||.|..-. .-|.+.|+..--+.+|..
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~ 73 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQV 73 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 334444 4478999998533 333444665555555543
No 272
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.96 E-value=0.19 Score=34.85 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=41.8
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCC-------CcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGV-------GPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFL 84 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v-------~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~i 84 (111)
++-|.+.|.|.|.+..+.+.++.+ +|-.+|+...++..+ ..+ ++-.+..++.|++ |-+|+-+
T Consensus 148 lIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~---kfr-is~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 148 LIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAA---KFR-ISLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred EEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHH---hee-eccCcccccCCeEEEEccchhh
Confidence 566889999999999999988744 456789988887442 111 1111123788886 6677654
No 273
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=92.85 E-value=0.52 Score=32.66 Aligned_cols=81 Identities=20% Similarity=0.327 Sum_probs=53.2
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcE---EEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEEeccHHHHHH-
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPT---IVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFLGGIETLMAC- 93 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~---~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~igg~~~~~~~- 93 (111)
|..+.++-+-|..+-..+.=+...|. +..+...... .-..... ..+|++ +-+|+.||.|-.+.+-
T Consensus 164 VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~g------as~~F~~---n~lP~LliYkgGeLIgNFv~va~ql 234 (273)
T KOG3171|consen 164 VHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTG------ASDRFSL---NVLPTLLIYKGGELIGNFVSVAEQL 234 (273)
T ss_pred EEEecCCCchHHHHhhhHHHhhccCCceeEEEeeecccc------chhhhcc---cCCceEEEeeCCchhHHHHHHHHHH
Confidence 33556888888888877776666553 3344332221 1122233 677876 6799999999655543
Q ss_pred ---HHcCChHHHHHhcCcc
Q 037432 94 ---HINGTLVPLLKDAGAL 109 (111)
Q Consensus 94 ---~~~g~L~~~l~~~g~~ 109 (111)
+-.|.|.+.|++-|++
T Consensus 235 gedffa~dle~FL~e~gll 253 (273)
T KOG3171|consen 235 GEDFFAGDLESFLNEYGLL 253 (273)
T ss_pred hhhhhhhhHHHHHHHcCCC
Confidence 4578999999999876
No 274
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=0.24 Score=36.62 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=33.6
Q ss_pred CCcEEEEEeCCChhhHHHHHHHhhCC------CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE
Q 037432 16 SNAVVLFSISGCCMCTVAKRLLFSLG------VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI 77 (111)
Q Consensus 16 ~~~vvif~~~~Cp~C~~~~~~l~~~~------v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v 77 (111)
...++.|+.|||++|+...+.+.+.. ..+....++.... ..+....+. ...|++
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~-----~~~~~~~~v---~~~Pt~ 222 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVH-----KSLASRLEV---RGYPTL 222 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchH-----HHHhhhhcc---cCCceE
Confidence 34488899999999998766655442 3334444443311 236666676 677776
No 275
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.13 E-value=0.6 Score=35.64 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=49.3
Q ss_pred eCCChhhHHHHHHHhhCC--C-CcEEEEccCCcchHH-HHHHHHHHhCCCCCCcccEE---EE----CCEEEeccHHHHH
Q 037432 24 ISGCCMCTVAKRLLFSLG--V-GPTIVELDHHVAGRE-IQAVLFQLSSNGQHQTVPAI---FV----GGKFLGGIETLMA 92 (111)
Q Consensus 24 ~~~Cp~C~~~~~~l~~~~--v-~~~~i~v~~~~~~~~-~~~~l~~~~g~~~~~~vP~v---fi----~g~~igg~~~~~~ 92 (111)
+.+|||=.++.-+-+.+. + +|....|-.+|+..+ ..+.+-+..|. .+..-|.| .+ .|..+||++|+.+
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w-~~~~spiiwrel~~rggkg~l~gg~~~f~e 79 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGW-SHKRSPIIWRELLDRGGKGLLLGGCNEFLE 79 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCC-ccCCCCeeHHHHHhcCCCceEecChHHHHH
Confidence 468999999988877763 3 477888888776433 22333344453 24677988 34 6789999999998
Q ss_pred HHH
Q 037432 93 CHI 95 (111)
Q Consensus 93 ~~~ 95 (111)
+.+
T Consensus 80 ~~~ 82 (452)
T cd05295 80 YAE 82 (452)
T ss_pred HHH
Confidence 754
No 276
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.08 E-value=0.05 Score=42.26 Aligned_cols=66 Identities=18% Similarity=0.156 Sum_probs=41.6
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCC---c-EEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE------C---CEEE
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVG---P-TIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV------G---GKFL 84 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~---~-~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi------~---g~~i 84 (111)
.+|-|..+||++|++..+.++++... + ..+-|.....+.+.-..+-+..++ +.+|++.. + |..+
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V---~~~Ptlryf~~~~~~~~~G~~~ 136 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSV---SGYPTLRYFPPDSQNKTDGSDV 136 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCC---CCCceeeecCCccccCcCCCcc
Confidence 46778889999999999888876322 1 222222222222222357777888 89999854 2 5666
Q ss_pred ec
Q 037432 85 GG 86 (111)
Q Consensus 85 gg 86 (111)
.|
T Consensus 137 ~~ 138 (606)
T KOG1731|consen 137 SG 138 (606)
T ss_pred cC
Confidence 66
No 277
>PRK13189 peroxiredoxin; Provisional
Probab=91.93 E-value=0.53 Score=32.39 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=20.5
Q ss_pred CcEEE--EEeCCChhhHHHH-------HHHhhCCCCcEEEEccCC
Q 037432 17 NAVVL--FSISGCCMCTVAK-------RLLFSLGVGPTIVELDHH 52 (111)
Q Consensus 17 ~~vvi--f~~~~Cp~C~~~~-------~~l~~~~v~~~~i~v~~~ 52 (111)
..+++ |..+|||.|..-. .-|++.++..--+.+|..
T Consensus 36 k~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~ 80 (222)
T PRK13189 36 KWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQV 80 (222)
T ss_pred CeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCH
Confidence 33554 4478999998533 334444665555555543
No 278
>PRK15000 peroxidase; Provisional
Probab=91.89 E-value=1 Score=30.49 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=20.1
Q ss_pred cCCcEEEEEeC--CChhhHHHHHHHh-------hCCCCcEEEEcc
Q 037432 15 SSNAVVLFSIS--GCCMCTVAKRLLF-------SLGVGPTIVELD 50 (111)
Q Consensus 15 ~~~~vvif~~~--~Cp~C~~~~~~l~-------~~~v~~~~i~v~ 50 (111)
..+.+++|+.+ +||.|..-..-|. +.++.+--+.+|
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D 77 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD 77 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 34456666644 7999986443333 345544444444
No 279
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=91.71 E-value=0.74 Score=29.28 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=11.0
Q ss_pred cCCcEEE-EE-eCCChhhHHH
Q 037432 15 SSNAVVL-FS-ISGCCMCTVA 33 (111)
Q Consensus 15 ~~~~vvi-f~-~~~Cp~C~~~ 33 (111)
+.+.+++ |+ ..+||.|...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~ 49 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQ 49 (154)
T ss_pred CCCCEEEEEECCCCCCchHHH
Confidence 3344444 44 3579999743
No 280
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=91.43 E-value=0.52 Score=30.74 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=13.9
Q ss_pred EEEEEeCC-ChhhHHHHHHHhh
Q 037432 19 VVLFSISG-CCMCTVAKRLLFS 39 (111)
Q Consensus 19 vvif~~~~-Cp~C~~~~~~l~~ 39 (111)
|+.|+.+| ||.|.+-..-|.+
T Consensus 48 vl~f~~s~~cp~C~~e~~~l~~ 69 (167)
T PRK00522 48 VLNIFPSIDTGVCATSVRKFNQ 69 (167)
T ss_pred EEEEEcCCCCCccHHHHHHHHH
Confidence 44566667 9999865555544
No 281
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=91.42 E-value=1.3 Score=30.17 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=32.0
Q ss_pred CCcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHH
Q 037432 16 SNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQ 59 (111)
Q Consensus 16 ~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~ 59 (111)
...+.+|.+..||.|......+...+-++..+-|++..+...++
T Consensus 109 ~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~Ir 152 (200)
T TIGR03759 109 GGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDERIR 152 (200)
T ss_pred CCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHHHH
Confidence 44588999999999997777776666677777777555544443
No 282
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=91.27 E-value=0.18 Score=35.81 Aligned_cols=73 Identities=11% Similarity=0.208 Sum_probs=58.0
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCc-chHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHHc
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHV-AGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHIN 96 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~-~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~~ 96 (111)
.++|-.|..-+..+++-++.+.|++++.++|+-.. ++.+ .++...... .-||++.-+...|-....|+++.++
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~e--pwFmrlNp~---gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKE--PWFMRLNPG---GEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccC--chheecCCC---CCCceEecCCeecccHHHHHHHHHH
Confidence 78899999999999999999999999999987421 2111 356666665 8999877777888999999998765
No 283
>PRK13191 putative peroxiredoxin; Provisional
Probab=91.01 E-value=0.75 Score=31.50 Aligned_cols=39 Identities=15% Similarity=0.081 Sum_probs=22.8
Q ss_pred CCcEEE--EEeCCChhhHHHHHHH-------hhCCCCcEEEEccCCcc
Q 037432 16 SNAVVL--FSISGCCMCTVAKRLL-------FSLGVGPTIVELDHHVA 54 (111)
Q Consensus 16 ~~~vvi--f~~~~Cp~C~~~~~~l-------~~~~v~~~~i~v~~~~~ 54 (111)
.+.+++ |..+|||.|..-...| ++.|+.+--+.+|....
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~ 80 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNIS 80 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 334554 4478999998644333 34466655566665443
No 284
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=90.87 E-value=0.76 Score=30.81 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=11.9
Q ss_pred CcEEEE-E-eCCChhhHHHH
Q 037432 17 NAVVLF-S-ISGCCMCTVAK 34 (111)
Q Consensus 17 ~~vvif-~-~~~Cp~C~~~~ 34 (111)
+.+++| + ..|||.|..-.
T Consensus 32 k~vvL~F~P~~~~p~C~~el 51 (187)
T PRK10382 32 RWSVFFFYPADFTFVCPTEL 51 (187)
T ss_pred CeEEEEEECCCCCCcCHHHH
Confidence 345554 4 68999998533
No 285
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=89.28 E-value=2.5 Score=28.25 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=11.5
Q ss_pred EEEEEeCCChhhHH
Q 037432 19 VVLFSISGCCMCTV 32 (111)
Q Consensus 19 vvif~~~~Cp~C~~ 32 (111)
++.|+.+||++|..
T Consensus 29 LVvf~AS~C~~~~q 42 (183)
T PRK10606 29 LIVNVASKCGLTPQ 42 (183)
T ss_pred EEEEEeCCCCCcHH
Confidence 56688999999974
No 286
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.99 E-value=0.81 Score=31.75 Aligned_cols=50 Identities=24% Similarity=0.206 Sum_probs=27.3
Q ss_pred cEEEEEeCCChhhH----HHHHHHhhCC----CCc--EEEEcc--CCcchHHHHHHHHHHhC
Q 037432 18 AVVLFSISGCCMCT----VAKRLLFSLG----VGP--TIVELD--HHVAGREIQAVLFQLSS 67 (111)
Q Consensus 18 ~vvif~~~~Cp~C~----~~~~~l~~~~----v~~--~~i~v~--~~~~~~~~~~~l~~~~g 67 (111)
.|.+|+-.-||+|- +.++.+.+++ +++ ....++ ..+...+.++.|...+|
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g 68 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYG 68 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEecccccCCCCCcccccHHHHHHHHhC
Confidence 47778889999996 4445555554 221 112222 22223445556766666
No 287
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=88.86 E-value=2.7 Score=29.77 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=21.7
Q ss_pred cCCcEEEEE--eCCChhhHHH-------HHHHhhCCCCcEEEEccC
Q 037432 15 SSNAVVLFS--ISGCCMCTVA-------KRLLFSLGVGPTIVELDH 51 (111)
Q Consensus 15 ~~~~vvif~--~~~Cp~C~~~-------~~~l~~~~v~~~~i~v~~ 51 (111)
....+++|+ ..|||.|..- .+-|.+.|+.+--+.+|.
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 444566654 5799999853 333444566555555544
No 288
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=88.62 E-value=1.3 Score=27.40 Aligned_cols=49 Identities=20% Similarity=0.383 Sum_probs=30.6
Q ss_pred CChhhHHHHHHHhhCC-----CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECC
Q 037432 26 GCCMCTVAKRLLFSLG-----VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGG 81 (111)
Q Consensus 26 ~Cp~C~~~~~~l~~~~-----v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g 81 (111)
.||+|..+.-+|.... ++.+.++.. ..+ .++.+..|. .+.+.|+++.++
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~---RPR---~~vi~llGE-~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFP---RPR---QAVIALLGE-ANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCC---Cch---HHHHHHhCh-hccCCCEEEeCC
Confidence 4999999999998762 333333332 222 245555553 136899988766
No 289
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=88.11 E-value=0.98 Score=29.56 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=22.0
Q ss_pred HHhCCCCCCcccEEEECCEEEeccHHHHHH
Q 037432 64 QLSSNGQHQTVPAIFVGGKFLGGIETLMAC 93 (111)
Q Consensus 64 ~~~g~~~~~~vP~vfi~g~~igg~~~~~~~ 93 (111)
...|. ..+|+++|||+.+-|.+.+..+
T Consensus 161 ~~~gi---~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 161 IARGV---FGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred HHcCC---CcCCeEEECCeeecccccHHHH
Confidence 34577 9999999999999998866554
No 290
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=87.75 E-value=2 Score=30.13 Aligned_cols=63 Identities=8% Similarity=0.056 Sum_probs=44.8
Q ss_pred chhHHHHHHHhhcCCcEEEEEeC-----CChhhHHHHHHHhhC------CCCcEEEEccCCcchHHHHHHHHHHhCC
Q 037432 3 LEKTYEIVTHLASSNAVVLFSIS-----GCCMCTVAKRLLFSL------GVGPTIVELDHHVAGREIQAVLFQLSSN 68 (111)
Q Consensus 3 ~~~~~~~~~~~~~~~~vvif~~~-----~Cp~C~~~~~~l~~~------~v~~~~i~v~~~~~~~~~~~~l~~~~g~ 68 (111)
++.+.+.++++-.+-.|++|..+ .-++=..++.+|+++ ++.++++|-+..+... +.....+|.
T Consensus 13 S~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~---~~~~~~~Gi 86 (271)
T PF09822_consen 13 SDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEA---EEKAKEYGI 86 (271)
T ss_pred CHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHH---HHHHHhcCC
Confidence 46677888887776667788876 456677889999887 5778888876665533 245566676
No 291
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=86.59 E-value=3.4 Score=26.64 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=12.9
Q ss_pred cCCcEEEEE--eCCChhhHHH
Q 037432 15 SSNAVVLFS--ISGCCMCTVA 33 (111)
Q Consensus 15 ~~~~vvif~--~~~Cp~C~~~ 33 (111)
...++++|+ ..+||.|..-
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e 48 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQ 48 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchh
Confidence 344666666 4579999864
No 292
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=86.03 E-value=3.3 Score=26.40 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=41.4
Q ss_pred HHHHHHHhh--cCCcEEE--EEeCCChhhHHHHHHHhhCC--C----CcEEEEccCCcchHHHHHHHHHHhCCCCCCccc
Q 037432 6 TYEIVTHLA--SSNAVVL--FSISGCCMCTVAKRLLFSLG--V----GPTIVELDHHVAGREIQAVLFQLSSNGQHQTVP 75 (111)
Q Consensus 6 ~~~~~~~~~--~~~~vvi--f~~~~Cp~C~~~~~~l~~~~--v----~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP 75 (111)
+.-.+.+++ .+.++++ |+.+|-|.|.+.-.+|.+.. + .+-.+|+++.|+ +...+.... +..=
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpd-------fn~~yel~d-P~tv 78 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPD-------FNQMYELYD-PCTV 78 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHC-------CHHHTTS-S-SEEE
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchh-------hhcccccCC-CeEE
Confidence 344555554 2445433 99999999999998887652 1 234568887777 444454310 1111
Q ss_pred EEEECCEEE
Q 037432 76 AIFVGGKFL 84 (111)
Q Consensus 76 ~vfi~g~~i 84 (111)
.+|.+++++
T Consensus 79 mFF~rnkhm 87 (133)
T PF02966_consen 79 MFFFRNKHM 87 (133)
T ss_dssp EEEETTEEE
T ss_pred EEEecCeEE
Confidence 346688875
No 293
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=85.79 E-value=0.93 Score=29.65 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=21.8
Q ss_pred cEEEEEeCCChhhHHHHHHH----hhC-CCCcEEEEc
Q 037432 18 AVVLFSISGCCMCTVAKRLL----FSL-GVGPTIVEL 49 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l----~~~-~v~~~~i~v 49 (111)
+|++|+...||+|-.+...| ++. +++++.+.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 47899999999997555544 444 666555444
No 294
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=85.48 E-value=5.1 Score=24.70 Aligned_cols=62 Identities=8% Similarity=0.108 Sum_probs=35.1
Q ss_pred HHHHHHhhcCCc-EEEEE-eC----CChhhH------HHHHHHhhCCCCcEE--EEccCCcchHHHHHHHHHHhCCCCCC
Q 037432 7 YEIVTHLASSNA-VVLFS-IS----GCCMCT------VAKRLLFSLGVGPTI--VELDHHVAGREIQAVLFQLSSNGQHQ 72 (111)
Q Consensus 7 ~~~~~~~~~~~~-vvif~-~~----~Cp~C~------~~~~~l~~~~v~~~~--i~v~~~~~~~~~~~~l~~~~g~~~~~ 72 (111)
.+.++.+-++.+ +.||. ++ ||-+|+ .+.+++++ .|-. .|+... ++. .+....+. .
T Consensus 7 ~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~---~fv~w~~dv~~~-eg~----~la~~l~~---~ 75 (116)
T cd02991 7 SQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT---RMLFWACSVAKP-EGY----RVSQALRE---R 75 (116)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc---CEEEEEEecCCh-HHH----HHHHHhCC---C
Confidence 455555555555 55555 45 577885 44455543 2322 344433 333 37777787 8
Q ss_pred cccEE-EE
Q 037432 73 TVPAI-FV 79 (111)
Q Consensus 73 ~vP~v-fi 79 (111)
++|.+ ++
T Consensus 76 ~~P~~~~l 83 (116)
T cd02991 76 TYPFLAMI 83 (116)
T ss_pred CCCEEEEE
Confidence 99998 45
No 295
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=84.83 E-value=2.1 Score=23.66 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=14.4
Q ss_pred EEECCEEEeccHHHHHHH
Q 037432 77 IFVGGKFLGGIETLMACH 94 (111)
Q Consensus 77 vfi~g~~igg~~~~~~~~ 94 (111)
||+||.++|=.++-.++.
T Consensus 1 VFlNG~~iG~~~~p~~l~ 18 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEELV 18 (63)
T ss_dssp EEETTEEEEEESSHHHHH
T ss_pred CEECCEEEEEEcCHHHHH
Confidence 799999999887665544
No 296
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=84.66 E-value=6.5 Score=27.76 Aligned_cols=101 Identities=16% Similarity=0.219 Sum_probs=59.9
Q ss_pred CCchhHHHHHHHhhc--CCcEEEEEeCC--ChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccE
Q 037432 1 MKLEKTYEIVTHLAS--SNAVVLFSISG--CCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPA 76 (111)
Q Consensus 1 m~~~~~~~~~~~~~~--~~~vvif~~~~--Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~ 76 (111)
|...++.+....++. ...+++|.+|+ -|.=.+++.+|++.|++.-.+ ...|.... .+++.+. |. =.
T Consensus 43 m~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI--~D~p~~K~-~d~l~~~-g~------GY 112 (277)
T PRK00994 43 MGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVI--GDAPGKKV-KDAMEEQ-GL------GY 112 (277)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEE--cCCCccch-HHHHHhc-CC------cE
Confidence 445566656666643 34588888775 777889999999999965433 33333222 1345442 22 23
Q ss_pred EEECC-EEEeccHHHHH---HH-HcCChHHHHHhcCcccC
Q 037432 77 IFVGG-KFLGGIETLMA---CH-INGTLVPLLKDAGALWL 111 (111)
Q Consensus 77 vfi~g-~~igg~~~~~~---~~-~~g~L~~~l~~~g~~~~ 111 (111)
|.+.. -.||.--++.+ +. =++.+.+.|...|++||
T Consensus 113 Iivk~DpMIGArREFLDP~EMa~fNaD~~kVLa~tG~~Rl 152 (277)
T PRK00994 113 IIVKADPMIGARREFLDPVEMALFNADVLKVLAGTGAVRL 152 (277)
T ss_pred EEEecCccccchhhccCHHHHHHhhhhHHHHHHhhhHHHH
Confidence 44444 44555433332 22 36778888888887764
No 297
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=84.53 E-value=8.4 Score=24.73 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=44.6
Q ss_pred CCcEEEEEeCCChhhHHHHHHHhhCCC--CcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE-ECCEEEeccHHHHH
Q 037432 16 SNAVVLFSISGCCMCTVAKRLLFSLGV--GPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF-VGGKFLGGIETLMA 92 (111)
Q Consensus 16 ~~~vvif~~~~Cp~C~~~~~~l~~~~v--~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf-i~g~~igg~~~~~~ 92 (111)
....+|++--.||.|.....+|.+..- .+...++...+. . ++.+.+|......--.++ -+|...-|.|-+.+
T Consensus 7 ~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g-~----~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~ 81 (137)
T COG3011 7 KPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPG-Q----ALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIR 81 (137)
T ss_pred CCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchh-h----hHHhhcCCChhhhheeeEecCCceEeccHHHHH
Confidence 344677777999999999999988743 455555543333 2 466777762112122234 35677777776655
Q ss_pred H
Q 037432 93 C 93 (111)
Q Consensus 93 ~ 93 (111)
.
T Consensus 82 i 82 (137)
T COG3011 82 I 82 (137)
T ss_pred H
Confidence 4
No 298
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=83.56 E-value=1.8 Score=28.21 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=32.7
Q ss_pred HHHHHhhCCCCcEEEEcc-CCcch-HHHHH--HHHHHhCCCCCCcccEEEECCE-EEeccHHHHHH
Q 037432 33 AKRLLFSLGVGPTIVELD-HHVAG-REIQA--VLFQLSSNGQHQTVPAIFVGGK-FLGGIETLMAC 93 (111)
Q Consensus 33 ~~~~l~~~~v~~~~i~v~-~~~~~-~~~~~--~l~~~~g~~~~~~vP~vfi~g~-~igg~~~~~~~ 93 (111)
+..++.+.|++...++-. .++.. ..+.+ ......|. ..+|+++|||+ .+-|.+.+-.+
T Consensus 126 l~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv---~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 126 LAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGV---FGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp HHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTC---SSSSEEEETTTEEEESCSSHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCC---cccCEEEECCEEEEECCCCHHHH
Confidence 666777777755333211 12221 11111 23445687 99999999999 78887755443
No 299
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=83.56 E-value=4.9 Score=26.90 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=19.5
Q ss_pred cEEEEE--eCCChhhHHHH-------HHHhhCCCCcEEEEccCC
Q 037432 18 AVVLFS--ISGCCMCTVAK-------RLLFSLGVGPTIVELDHH 52 (111)
Q Consensus 18 ~vvif~--~~~Cp~C~~~~-------~~l~~~~v~~~~i~v~~~ 52 (111)
.+++|+ .++||.|.... .-|.+.|+.+--+.+|..
T Consensus 38 ~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 38 WVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred EEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 444444 36788887533 333444666666666543
No 300
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=83.23 E-value=4.2 Score=25.49 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=30.2
Q ss_pred CChhhH-----------HHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEE
Q 037432 26 GCCMCT-----------VAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFL 84 (111)
Q Consensus 26 ~Cp~C~-----------~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~i 84 (111)
+|+-|. .++..|..+|+....-.+...++ ++...+ -..|.|-|||+.+
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~------~~~~~~-----~~S~~I~inG~pi 72 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE------EFARQP-----LESPTIRINGRPI 72 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH------HHhhcc-----cCCCeeeECCEeh
Confidence 799996 55566777788765444433332 122211 4779999999876
No 301
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=83.06 E-value=4.6 Score=27.66 Aligned_cols=24 Identities=29% Similarity=0.200 Sum_probs=17.0
Q ss_pred CCcEEEEEeCCChhhHHHHHHHhh
Q 037432 16 SNAVVLFSISGCCMCTVAKRLLFS 39 (111)
Q Consensus 16 ~~~vvif~~~~Cp~C~~~~~~l~~ 39 (111)
...++.|....||||.+...-+.+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHH
Confidence 345777888889999766665554
No 302
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=82.51 E-value=4.1 Score=24.24 Aligned_cols=39 Identities=13% Similarity=-0.075 Sum_probs=26.9
Q ss_pred CCchhHHHHHHHhhc--CCcEE--EEEeCCChhhHHHHHHHhhC
Q 037432 1 MKLEKTYEIVTHLAS--SNAVV--LFSISGCCMCTVAKRLLFSL 40 (111)
Q Consensus 1 m~~~~~~~~~~~~~~--~~~vv--if~~~~Cp~C~~~~~~l~~~ 40 (111)
|-..+.++.++++.+ .++|+ +|+.+. ++|..++++|++.
T Consensus 1 ~l~~~~~~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~ 43 (94)
T cd02974 1 MLDANLKQQLKAYLERLENPVELVASLDDS-EKSAELLELLEEI 43 (94)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHH
Confidence 345666777777654 33444 466556 9999999999876
No 303
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=82.37 E-value=12 Score=24.69 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=48.6
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCC-------------------CCCcccEE--E
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNG-------------------QHQTVPAI--F 78 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~-------------------~~~~vP~v--f 78 (111)
++=+++.-+.-.++..+|+++|++|+..-+..+.....+.+..++....+ --.++|.| -
T Consensus 8 IMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGVP 87 (162)
T COG0041 8 IMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGVP 87 (162)
T ss_pred EecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEecc
Confidence 33445667888899999999999999888876665555444443322210 02355655 4
Q ss_pred ECCEEEeccHHHHHHH
Q 037432 79 VGGKFLGGIETLMACH 94 (111)
Q Consensus 79 i~g~~igg~~~~~~~~ 94 (111)
+..+..+|.|.+....
T Consensus 88 v~s~~L~GlDSL~SiV 103 (162)
T COG0041 88 VQSKALSGLDSLLSIV 103 (162)
T ss_pred CccccccchHHHHHHh
Confidence 6667778888766543
No 304
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=82.32 E-value=7.4 Score=26.99 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=45.2
Q ss_pred CCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHHcCChHHHHH
Q 037432 25 SGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLK 104 (111)
Q Consensus 25 ~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~~g~L~~~l~ 104 (111)
.+-+|-.+++..|.++|..+..+++...+.. .+...... .=.|+|+| |..-.+....++-.|.+.++
T Consensus 46 ~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~-----~Ie~~l~~-----~d~IyVgG---GNTF~LL~~lke~gld~iIr 112 (224)
T COG3340 46 EDDFYVEKVRNALAKLGLEVSELHLSKPPLA-----AIENKLMK-----ADIIYVGG---GNTFNLLQELKETGLDDIIR 112 (224)
T ss_pred chHHHHHHHHHHHHHcCCeeeeeeccCCCHH-----HHHHhhhh-----ccEEEECC---chHHHHHHHHHHhCcHHHHH
Confidence 5688999999999999999999998876652 23332222 22456655 22223444444555666665
Q ss_pred h---cCccc
Q 037432 105 D---AGALW 110 (111)
Q Consensus 105 ~---~g~~~ 110 (111)
+ +|.+|
T Consensus 113 ~~vk~G~~Y 121 (224)
T COG3340 113 ERVKAGTPY 121 (224)
T ss_pred HHHHcCCce
Confidence 4 45444
No 305
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=81.46 E-value=13 Score=24.63 Aligned_cols=74 Identities=16% Similarity=0.061 Sum_probs=40.9
Q ss_pred hHHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhCCCC------------cEEEEccCCcchHHHHHHHHHHhCCCCCC
Q 037432 5 KTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVG------------PTIVELDHHVAGREIQAVLFQLSSNGQHQ 72 (111)
Q Consensus 5 ~~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~v~------------~~~i~v~~~~~~~~~~~~l~~~~g~~~~~ 72 (111)
++.+.+..+.. +.+.+-..+.++.=..|+++|+.+++. +...+|........ .+.+++.+|. +
T Consensus 49 dv~~iL~~L~~-~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~H-f~~i~~~tgI---~ 123 (169)
T PF12689_consen 49 DVPEILQELKE-RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTH-FRRIHRKTGI---P 123 (169)
T ss_dssp THHHHHHHHHH-CT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHH-HHHHHHHH------
T ss_pred CHHHHHHHHHH-CCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHH-HHHHHHhcCC---C
Confidence 34455555443 455554444444448999999999887 34566666544443 3467788887 6
Q ss_pred cccEEEECCEE
Q 037432 73 TVPAIFVGGKF 83 (111)
Q Consensus 73 ~vP~vfi~g~~ 83 (111)
.-=.+|+|++.
T Consensus 124 y~eMlFFDDe~ 134 (169)
T PF12689_consen 124 YEEMLFFDDES 134 (169)
T ss_dssp GGGEEEEES-H
T ss_pred hhHEEEecCch
Confidence 66689999874
No 306
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=81.38 E-value=3.3 Score=27.89 Aligned_cols=32 Identities=19% Similarity=0.022 Sum_probs=20.9
Q ss_pred cEEEEEeCCChhhHHHHHHH----hhCCCC--cEEEEc
Q 037432 18 AVVLFSISGCCMCTVAKRLL----FSLGVG--PTIVEL 49 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l----~~~~v~--~~~i~v 49 (111)
+|-+|+-..||+|--++..| +..+++ +..+.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 57799999999996554444 445554 444444
No 307
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=80.11 E-value=6.5 Score=25.88 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=18.2
Q ss_pred HHhCCCCCCcccEEEECCEE-EeccHHHH
Q 037432 64 QLSSNGQHQTVPAIFVGGKF-LGGIETLM 91 (111)
Q Consensus 64 ~~~g~~~~~~vP~vfi~g~~-igg~~~~~ 91 (111)
...|. ..+|+++|||++ +.|.....
T Consensus 169 ~~~gv---~G~Pt~vv~g~~~~~G~~~~~ 194 (201)
T cd03024 169 RQLGI---SGVPFFVFNGKYAVSGAQPPE 194 (201)
T ss_pred HHCCC---CcCCEEEECCeEeecCCCCHH
Confidence 34577 899999999884 56665443
No 308
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=79.41 E-value=1.7 Score=26.39 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=13.5
Q ss_pred cEEEEEeCCChhhHH
Q 037432 18 AVVLFSISGCCMCTV 32 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~ 32 (111)
+|.+|+.+-||+|++
T Consensus 2 ~v~vyyESlCPd~~~ 16 (108)
T PF03227_consen 2 NVEVYYESLCPDCRR 16 (108)
T ss_pred EEEEEEEecCHhHHH
Confidence 588999999999986
No 309
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=78.66 E-value=9.8 Score=23.94 Aligned_cols=47 Identities=13% Similarity=0.035 Sum_probs=31.1
Q ss_pred hHHHHHHHhhc-CCcEEEEEeCCChhhH------------HHHHHHhhCCCCcEEEEccC
Q 037432 5 KTYEIVTHLAS-SNAVVLFSISGCCMCT------------VAKRLLFSLGVGPTIVELDH 51 (111)
Q Consensus 5 ~~~~~~~~~~~-~~~vvif~~~~Cp~C~------------~~~~~l~~~~v~~~~i~v~~ 51 (111)
++.+.++++.+ ...|++.|......+. ....||++++++|..+.+..
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 45555655433 3446666655555544 77899999999998777654
No 310
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=76.90 E-value=4.1 Score=27.93 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=21.2
Q ss_pred HHHHhCCCCCCcccEEEECCEEEeccHHHHH
Q 037432 62 LFQLSSNGQHQTVPAIFVGGKFLGGIETLMA 92 (111)
Q Consensus 62 l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~ 92 (111)
+....|. ..+|++|++|+.++|.-++.+
T Consensus 207 ~a~~~gv---~gTPt~~v~~~~~~g~~~~~~ 234 (244)
T COG1651 207 LAQQLGV---NGTPTFIVNGKLVPGLPDLDE 234 (244)
T ss_pred HHHhcCC---CcCCeEEECCeeecCCCCHHH
Confidence 3445577 899999999998888765443
No 311
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=76.84 E-value=1.6 Score=28.64 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=15.9
Q ss_pred cEEEEEeCCChhhHHHHHHHh
Q 037432 18 AVVLFSISGCCMCTVAKRLLF 38 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~ 38 (111)
+|.+|+-+.||+|-.+.+.|.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~ 22 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLE 22 (193)
T ss_pred eEEEEECCCCchhhCchHHHH
Confidence 478899999999975554444
No 312
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=76.19 E-value=7.2 Score=27.54 Aligned_cols=23 Identities=22% Similarity=0.470 Sum_probs=15.6
Q ss_pred EEEEeCCChhhHH----HHHHHhhCCC
Q 037432 20 VLFSISGCCMCTV----AKRLLFSLGV 42 (111)
Q Consensus 20 vif~~~~Cp~C~~----~~~~l~~~~v 42 (111)
+..+..|||+|.. .-..|.++|-
T Consensus 63 ~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 63 IFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred EEEecccCccchhhHHHHHHHHHhcCC
Confidence 3344678999974 4466777764
No 313
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=73.27 E-value=12 Score=24.32 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=22.1
Q ss_pred CCcEEEEE-eCCChhhH-HHHHHHhhCCCCcE
Q 037432 16 SNAVVLFS-ISGCCMCT-VAKRLLFSLGVGPT 45 (111)
Q Consensus 16 ~~~vvif~-~~~Cp~C~-~~~~~l~~~~v~~~ 45 (111)
...+++|. ++-|++|. .+.++.+++|++.-
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L 130 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSL 130 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHcCCCeE
Confidence 44577877 68899998 45566678898753
No 314
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=72.97 E-value=11 Score=24.05 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=35.0
Q ss_pred hHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHHcCChHHHHHh
Q 037432 30 CTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLKD 105 (111)
Q Consensus 30 C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~~g~L~~~l~~ 105 (111)
-.++++.|.++|+.+..+++...... ++.+.+.. .-.||+.| |....+.+..++-.|.+.|++
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~-~~~~~i~~---------ad~I~~~G---G~~~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDA-DILEAIRE---------ADAIFLGG---GDTFRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHH-HHHHHHHH---------SSEEEE-----S-HHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChH-HHHHHHHh---------CCEEEECC---CCHHHHHHHHHhCCHHHHHHH
Confidence 45788999999988777777654332 33333332 22466655 233444555556667777765
No 315
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=72.96 E-value=7.3 Score=23.02 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=41.9
Q ss_pred EEEEEeCCChhhHHH----HHHHhhC--C-CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEEC-----CEEEec
Q 037432 19 VVLFSISGCCMCTVA----KRLLFSL--G-VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVG-----GKFLGG 86 (111)
Q Consensus 19 vvif~~~~Cp~C~~~----~~~l~~~--~-v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~-----g~~igg 86 (111)
..+|....-|-+.++ ++++++. | ...+.+|+.++|+ +++.... -..|++.-- -+.||.
T Consensus 6 LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~-------lAE~~~I---vATPtLIK~~P~P~rriiGd 75 (87)
T TIGR02654 6 LKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQ-------LAEEDKI---LATPTLSKILPPPVRKIIGD 75 (87)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-------HHhHCCE---EEecHHhhcCCCCcceeecc
Confidence 567888888888644 4555543 2 3346788888877 6666676 677776432 266888
Q ss_pred cHHHHH
Q 037432 87 IETLMA 92 (111)
Q Consensus 87 ~~~~~~ 92 (111)
.++..+
T Consensus 76 ls~~~~ 81 (87)
T TIGR02654 76 LSDRER 81 (87)
T ss_pred ccchHH
Confidence 876554
No 316
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.94 E-value=22 Score=28.70 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=35.5
Q ss_pred HHHHHhhcCCc-EEE-EEeCCChhhHHH-HHHHhh------CCCCcEEEEcc--CCcchHHHHH-HHHHHhCCCCCCccc
Q 037432 8 EIVTHLASSNA-VVL-FSISGCCMCTVA-KRLLFS------LGVGPTIVELD--HHVAGREIQA-VLFQLSSNGQHQTVP 75 (111)
Q Consensus 8 ~~~~~~~~~~~-vvi-f~~~~Cp~C~~~-~~~l~~------~~v~~~~i~v~--~~~~~~~~~~-~l~~~~g~~~~~~vP 75 (111)
+.+.++-.+++ |.+ .+.++|..|+-+ +.-+.+ ++-.|..|.|| +.|+-..+.. ....++|+ ..+|
T Consensus 34 eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~---GGWP 110 (667)
T COG1331 34 EAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQ---GGWP 110 (667)
T ss_pred HHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccC---CCCc
Confidence 44445444444 544 457899999832 222222 13335555554 5566544433 45667788 6666
Q ss_pred E
Q 037432 76 A 76 (111)
Q Consensus 76 ~ 76 (111)
-
T Consensus 111 L 111 (667)
T COG1331 111 L 111 (667)
T ss_pred e
Confidence 5
No 317
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=72.44 E-value=20 Score=23.53 Aligned_cols=75 Identities=19% Similarity=0.171 Sum_probs=46.9
Q ss_pred EEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCC---------C----------CCCcccEE--EE
Q 037432 21 LFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSN---------G----------QHQTVPAI--FV 79 (111)
Q Consensus 21 if~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~---------~----------~~~~vP~v--fi 79 (111)
+=+.+.=|++.++...|+++|++|+..-..-+-....+.+..++.... + ...++|.| -+
T Consensus 5 mGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP~ 84 (156)
T TIGR01162 5 MGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVPV 84 (156)
T ss_pred ECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEEecC
Confidence 334567899999999999999998766666555544444444332110 0 02566665 34
Q ss_pred CCEEEeccHHHHHHHH
Q 037432 80 GGKFLGGIETLMACHI 95 (111)
Q Consensus 80 ~g~~igg~~~~~~~~~ 95 (111)
.....+|.|.+..+.+
T Consensus 85 ~~~~l~G~daLlS~vq 100 (156)
T TIGR01162 85 PSKALSGLDSLLSIVQ 100 (156)
T ss_pred CccCCCCHHHHHHHhc
Confidence 4455677777776655
No 318
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=72.10 E-value=7.1 Score=30.05 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=28.2
Q ss_pred CCchhHHHHHHHhhc--CCcEEE-EEeCCChhhHHHHHHHhhC
Q 037432 1 MKLEKTYEIVTHLAS--SNAVVL-FSISGCCMCTVAKRLLFSL 40 (111)
Q Consensus 1 m~~~~~~~~~~~~~~--~~~vvi-f~~~~Cp~C~~~~~~l~~~ 40 (111)
|-.++.++.++++.+ .++|.+ ++.+.|++|..++++|++.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 43 (517)
T PRK15317 1 MLDANLKTQLKQYLELLERPIELVASLDDSEKSAELKELLEEI 43 (517)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHH
Confidence 456677777777654 334433 3344899999999999887
No 319
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=71.88 E-value=17 Score=22.56 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=18.5
Q ss_pred CCCCCCcccEEEECCEEE-eccHHHHHH
Q 037432 67 SNGQHQTVPAIFVGGKFL-GGIETLMAC 93 (111)
Q Consensus 67 g~~~~~~vP~vfi~g~~i-gg~~~~~~~ 93 (111)
|. ..+|.|++|+++| -|-.|+..+
T Consensus 80 gi---~k~PAVVfD~~~VVYG~tDV~~A 104 (114)
T PF07511_consen 80 GI---TKYPAVVFDDRYVVYGETDVARA 104 (114)
T ss_pred Cc---cccCEEEEcCCeEEecccHHHHH
Confidence 76 8999999999874 666666554
No 320
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=71.66 E-value=28 Score=25.85 Aligned_cols=87 Identities=7% Similarity=-0.035 Sum_probs=56.0
Q ss_pred hhHHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEc----------cCCcchHHHHHHHHHHhCCCCCCc
Q 037432 4 EKTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVEL----------DHHVAGREIQAVLFQLSSNGQHQT 73 (111)
Q Consensus 4 ~~~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v----------~~~~~~~~~~~~l~~~~g~~~~~~ 73 (111)
-++.+++-.+++..-+.||+-+.|..-..+.++.+.+.|++-.... ...|........+...+|. +.
T Consensus 50 f~~~~~~C~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~~~~~~~~~~~~~l~l~P~l~~Ai~diI~~~~W---r~ 126 (372)
T cd06387 50 FSVTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPTDADVQFVIQMRPALKGAILSLLAHYKW---EK 126 (372)
T ss_pred HHHHHHHHHHhhcccEEEEecCCHhHHHHHHHhhccccCCeeeeCCCCCCCCceEEEEChhHHHHHHHHHHhcCC---CE
Confidence 4566777778888888899999999889999999999998754321 2223322222334445554 88
Q ss_pred ccEEEECCEEEeccHHHHHH
Q 037432 74 VPAIFVGGKFLGGIETLMAC 93 (111)
Q Consensus 74 vP~vfi~g~~igg~~~~~~~ 93 (111)
+=.++-++.-.+...++.+.
T Consensus 127 ~~~iYd~d~gl~~Lq~L~~~ 146 (372)
T cd06387 127 FVYLYDTERGFSILQAIMEA 146 (372)
T ss_pred EEEEecCchhHHHHHHHHHh
Confidence 87777555544555555443
No 321
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=71.66 E-value=37 Score=24.93 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=35.0
Q ss_pred chhHHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhCCCCcE
Q 037432 3 LEKTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPT 45 (111)
Q Consensus 3 ~~~~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~ 45 (111)
+.++...+.++++..-+.||+..+++.+..+.+++.+.++++-
T Consensus 48 ~~~a~~~~c~Li~~gV~AI~G~~~s~~~~av~~i~~~~~IP~I 90 (363)
T cd06381 48 HFDAVQEACDLMNQGILALVTSTGCASAIALQSLTDAMHIPHL 90 (363)
T ss_pred hHHHHHHHHHHHhcCcEEEEecCChhHHHHHHHHhhCCCCCEE
Confidence 3456677888888855678998999999999999999988764
No 322
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=71.42 E-value=8.1 Score=28.28 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=33.0
Q ss_pred EEEEEe----CCChhhHHHHHHHhhC---------C-----CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEEC
Q 037432 19 VVLFSI----SGCCMCTVAKRLLFSL---------G-----VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVG 80 (111)
Q Consensus 19 vvif~~----~~Cp~C~~~~~~l~~~---------~-----v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~ 80 (111)
|++|++ ..|+-|+.+.+-++-. + +=|..+|.++.|+ .-+..+. .++|++++=
T Consensus 64 IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~-------~Fq~l~l---n~~P~l~~f 133 (331)
T KOG2603|consen 64 IVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ-------VFQQLNL---NNVPHLVLF 133 (331)
T ss_pred EEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH-------HHHHhcc---cCCCeEEEe
Confidence 677775 4699998776444321 1 1245667776554 4455676 899999764
No 323
>PRK09301 circadian clock protein KaiB; Provisional
Probab=71.41 E-value=8 Score=23.60 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=43.0
Q ss_pred EEEEEeCCChhhHHH----HHHHhhC-C--CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEEC-----CEEEec
Q 037432 19 VVLFSISGCCMCTVA----KRLLFSL-G--VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVG-----GKFLGG 86 (111)
Q Consensus 19 vvif~~~~Cp~C~~~----~~~l~~~-~--v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~-----g~~igg 86 (111)
..+|....-|-..++ ++++++. + ...+.+|+.++|+ +++.... -..|++.-- -+.||.
T Consensus 9 LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPe-------lAE~~~I---vATPTLIK~~P~P~rriiGD 78 (103)
T PRK09301 9 LKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQ-------LAEEDKI---LATPTLAKILPPPVRKIIGD 78 (103)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-------HHhHCCe---EEecHHhhcCCCCcceeecc
Confidence 567888888888754 4555543 2 3347788888877 6666676 777776432 267888
Q ss_pred cHHHHHH
Q 037432 87 IETLMAC 93 (111)
Q Consensus 87 ~~~~~~~ 93 (111)
.++..+.
T Consensus 79 lsd~~kV 85 (103)
T PRK09301 79 LSDREKV 85 (103)
T ss_pred cccHHHH
Confidence 8765553
No 324
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=71.24 E-value=13 Score=22.59 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=22.5
Q ss_pred CChhhH-HHHHHHhhCCCCcEEEEccC
Q 037432 26 GCCMCT-VAKRLLFSLGVGPTIVELDH 51 (111)
Q Consensus 26 ~Cp~C~-~~~~~l~~~~v~~~~i~v~~ 51 (111)
.|-.|. +++++|.+.+|+-+.+.+..
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 588885 77899999999999998876
No 325
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=70.14 E-value=4.9 Score=26.17 Aligned_cols=27 Identities=11% Similarity=-0.022 Sum_probs=18.5
Q ss_pred EEEEEeCCChhhHHHHHHHh----hCCCCcE
Q 037432 19 VVLFSISGCCMCTVAKRLLF----SLGVGPT 45 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~----~~~v~~~ 45 (111)
|.+|+-..||+|--....|. ++++.++
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~ 31 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVR 31 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeE
Confidence 45888999999976655554 4455443
No 326
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=69.01 E-value=11 Score=23.32 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=18.3
Q ss_pred hCCCCCCcccEEEECCEEE-eccHHHHHH
Q 037432 66 SSNGQHQTVPAIFVGGKFL-GGIETLMAC 93 (111)
Q Consensus 66 ~g~~~~~~vP~vfi~g~~i-gg~~~~~~~ 93 (111)
+|. ..+|.|++|+++| -|--|+-.+
T Consensus 80 lGi---~k~PAVV~D~~~VVYG~~DV~~A 105 (113)
T TIGR03757 80 LGV---TKIPAVVVDRRYVVYGETDVARA 105 (113)
T ss_pred cCC---ccCCEEEEcCCeEEecCccHHHH
Confidence 377 9999999999874 555555443
No 327
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=68.42 E-value=29 Score=27.24 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=36.7
Q ss_pred chhHHHHHHHhhcCCcEEEEEeCCCh-----hhHHHHHHHhhC-----CCCcEEEEccCCcch
Q 037432 3 LEKTYEIVTHLASSNAVVLFSISGCC-----MCTVAKRLLFSL-----GVGPTIVELDHHVAG 55 (111)
Q Consensus 3 ~~~~~~~~~~~~~~~~vvif~~~~Cp-----~C~~~~~~l~~~-----~v~~~~i~v~~~~~~ 55 (111)
++.+++.++.+-++-.|.+|..+.-| +-..++.+|+++ ++.++++|-..+++.
T Consensus 36 S~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~~ 98 (552)
T TIGR03521 36 SPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEEDE 98 (552)
T ss_pred CHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcchh
Confidence 45677778887666667777766544 346788899876 577788876665543
No 328
>PLN02590 probable tyrosine decarboxylase
Probab=68.08 E-value=56 Score=25.73 Aligned_cols=80 Identities=10% Similarity=0.192 Sum_probs=48.7
Q ss_pred CcEEEEEeCCChhhHHHHHHHhhCCC---CcEEEEccCC----cchHHHHHHHHHHhCCCCCCcccEEEE---CCEEEec
Q 037432 17 NAVVLFSISGCCMCTVAKRLLFSLGV---GPTIVELDHH----VAGREIQAVLFQLSSNGQHQTVPAIFV---GGKFLGG 86 (111)
Q Consensus 17 ~~vvif~~~~Cp~C~~~~~~l~~~~v---~~~~i~v~~~----~~~~~~~~~l~~~~g~~~~~~vP~vfi---~g~~igg 86 (111)
.++++|.+..+.+|. .+.+.=+|+ ....+.+|.. -+...+++.+.+-... ...|.+++ +-...|.
T Consensus 228 ~~~vvy~S~~aH~Sv--~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~---g~~P~~VvaTaGTT~tGa 302 (539)
T PLN02590 228 PQLVVYGSDQTHSSF--RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAK---GFIPFFICATVGTTSSAA 302 (539)
T ss_pred CCEEEEecCCchHHH--HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhc---CCCcEEEEEEeCCCCCcc
Confidence 468999988888874 344444455 3566666632 3455555666554443 55676543 3356788
Q ss_pred cHHHHHHHHcCChHHHHHhcC
Q 037432 87 IETLMACHINGTLVPLLKDAG 107 (111)
Q Consensus 87 ~~~~~~~~~~g~L~~~l~~~g 107 (111)
+|++.++ .++.++.|
T Consensus 303 iDpl~~I------a~i~~~~g 317 (539)
T PLN02590 303 VDPLVPL------GNIAKKYG 317 (539)
T ss_pred cCCHHHH------HHHHHHhC
Confidence 8888774 34555554
No 329
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=67.70 E-value=16 Score=23.76 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=28.2
Q ss_pred eCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHH
Q 037432 24 ISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQL 65 (111)
Q Consensus 24 ~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~ 65 (111)
.+.=|++.++...|+++|++|+..-+.-+....++.+.+.+.
T Consensus 10 ~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~ 51 (150)
T PF00731_consen 10 TSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEY 51 (150)
T ss_dssp GGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHh
Confidence 456899999999999999999866666555555544444443
No 330
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=67.47 E-value=35 Score=25.34 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=21.4
Q ss_pred EEEEEeCCChhhH----HHHHHHhhCCCCcEEEEccCCc
Q 037432 19 VVLFSISGCCMCT----VAKRLLFSLGVGPTIVELDHHV 53 (111)
Q Consensus 19 vvif~~~~Cp~C~----~~~~~l~~~~v~~~~i~v~~~~ 53 (111)
|+.++...|..-. .+++.|++.|+++-.++.|...
T Consensus 317 VI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L~iE~D~~~ 355 (377)
T TIGR03190 317 AIFLQQKFCDPHEGDYPDLKRHLEANGIPTLFLEFDITN 355 (377)
T ss_pred EEEecccCCCcchhhhHHHHHHHHHCCCCEEEEecCCCC
Confidence 5666666665543 4566666667777666666543
No 331
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=66.80 E-value=11 Score=29.11 Aligned_cols=40 Identities=18% Similarity=0.090 Sum_probs=27.9
Q ss_pred CCchhHHHHHHHhhc--CCcEEE-EEeCCChhhHHHHHHHhhC
Q 037432 1 MKLEKTYEIVTHLAS--SNAVVL-FSISGCCMCTVAKRLLFSL 40 (111)
Q Consensus 1 m~~~~~~~~~~~~~~--~~~vvi-f~~~~Cp~C~~~~~~l~~~ 40 (111)
|-..+.++.++++.+ .++|.+ ++.+.|++|..++++|++.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 43 (515)
T TIGR03140 1 MLDQSLLAQLKSYLASLENPVTLVLSAGSHEKSKELLELLDEI 43 (515)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHH
Confidence 445667777777654 334544 3334799999999999886
No 332
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=65.94 E-value=51 Score=24.26 Aligned_cols=87 Identities=6% Similarity=-0.011 Sum_probs=56.2
Q ss_pred hhHHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEc----------cCCcc-hHHHHHHHHHHhCCCCCC
Q 037432 4 EKTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVEL----------DHHVA-GREIQAVLFQLSSNGQHQ 72 (111)
Q Consensus 4 ~~~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v----------~~~~~-~~~~~~~l~~~~g~~~~~ 72 (111)
-++.+.+-++++..-+.||+-.++..+..+.++.++++|++-.... ...|. ...+. ++...+|. +
T Consensus 50 f~~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~-~~i~~~~w---k 125 (371)
T cd06388 50 FAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALL-SLLDHYEW---N 125 (371)
T ss_pred hHHHHHHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHH-HHHHhcCc---e
Confidence 3456677778888888899999999999999999999998743221 11121 12221 23344454 8
Q ss_pred cccEEEECCEEEeccHHHHHHH
Q 037432 73 TVPAIFVGGKFLGGIETLMACH 94 (111)
Q Consensus 73 ~vP~vfi~g~~igg~~~~~~~~ 94 (111)
++=.++..+.-.+..+.+.+..
T Consensus 126 ~vaiiYd~~~~~~~lq~l~~~~ 147 (371)
T cd06388 126 RFVFLYDTDRGYSILQAIMEKA 147 (371)
T ss_pred EEEEEecCCccHHHHHHHHHhh
Confidence 8867775466556666665544
No 333
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=65.30 E-value=11 Score=23.19 Aligned_cols=68 Identities=22% Similarity=0.188 Sum_probs=41.1
Q ss_pred CcEEEEEeCC---ChhhHHHHHHHhhC----CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE--EECCEEEecc
Q 037432 17 NAVVLFSISG---CCMCTVAKRLLFSL----GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI--FVGGKFLGGI 87 (111)
Q Consensus 17 ~~vvif~~~~---Cp~C~~~~~~l~~~----~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v--fi~g~~igg~ 87 (111)
...++|.... +|-+..+--+|-++ +-.+..--+. +. ...+|...+|. ..+|.+ |-+|+++|..
T Consensus 27 ~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~--~~---~e~~L~~r~gv---~~~PaLvf~R~g~~lG~i 98 (107)
T PF07449_consen 27 GDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA--RA---AERALAARFGV---RRWPALVFFRDGRYLGAI 98 (107)
T ss_dssp SCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE--HH---HHHHHHHHHT----TSSSEEEEEETTEEEEEE
T ss_pred CcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC--ch---hHHHHHHHhCC---ccCCeEEEEECCEEEEEe
Confidence 3356666543 56666666666654 3333332333 22 22479999998 899987 6799999987
Q ss_pred HHHHH
Q 037432 88 ETLMA 92 (111)
Q Consensus 88 ~~~~~ 92 (111)
..+..
T Consensus 99 ~gi~d 103 (107)
T PF07449_consen 99 EGIRD 103 (107)
T ss_dssp ESSST
T ss_pred cCeec
Confidence 65543
No 334
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=64.12 E-value=47 Score=23.22 Aligned_cols=95 Identities=17% Similarity=0.230 Sum_probs=49.0
Q ss_pred HHHHHHHhhcC--CcEEEEEeCC--ChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECC
Q 037432 6 TYEIVTHLASS--NAVVLFSISG--CCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGG 81 (111)
Q Consensus 6 ~~~~~~~~~~~--~~vvif~~~~--Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g 81 (111)
.+..+.++..+ ..+++|.+|+ -|.=.+++.+|.+-+++...+ ...| ....++++.+.. +=.|.++-
T Consensus 48 veaav~~~~e~~~pDfvi~isPNpaaPGP~kARE~l~~s~~Paiii--gDaP-g~~vkdeleeqG-------lGYIivk~ 117 (277)
T COG1927 48 VEAAVTEMLEEFNPDFVIYISPNPAAPGPKKAREILSDSDVPAIII--GDAP-GLKVKDELEEQG-------LGYIIVKA 117 (277)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEe--cCCc-cchhHHHHHhcC-------CeEEEecC
Confidence 34444444432 3477777654 677778888888777765433 3333 333445555432 12344333
Q ss_pred -EEEeccHHHHH---HH-HcCChHHHHHhcCccc
Q 037432 82 -KFLGGIETLMA---CH-INGTLVPLLKDAGALW 110 (111)
Q Consensus 82 -~~igg~~~~~~---~~-~~g~L~~~l~~~g~~~ 110 (111)
-.||.--++.+ +. =+..+.+.|...|+.|
T Consensus 118 DpmiGArREFLDPvEMA~fNaDv~kVLa~tGa~R 151 (277)
T COG1927 118 DPMIGARREFLDPVEMASFNADVMKVLAATGAFR 151 (277)
T ss_pred CcccchhhhhcCHHHHHhhhhHHHHHHHhccHHH
Confidence 33444333322 22 2345666666666655
No 335
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=64.07 E-value=2.5 Score=28.94 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=43.5
Q ss_pred EEEEEe-----CCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEE--EeccHHHH
Q 037432 19 VVLFSI-----SGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKF--LGGIETLM 91 (111)
Q Consensus 19 vvif~~-----~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~--igg~~~~~ 91 (111)
-.+|.+ -+|++|.....+=.+.+.++....++ ++.+.+...... .. =.++-+|++ .-+..++.
T Consensus 23 ~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~------~I~~~i~~~~~~---~~-~V~lTGGEP~~~~~l~~Ll 92 (212)
T COG0602 23 PSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSAD------EILADIKSLGYK---AR-GVSLTGGEPLLQPNLLELL 92 (212)
T ss_pred eeEEEEcCCCCCCCCCCCChhhhcccccCCCCccCHH------HHHHHHHhcCCC---cc-eEEEeCCcCCCcccHHHHH
Confidence 455665 35999987766544443444333332 333344443221 11 245788888 33666666
Q ss_pred HHHHcCChHHHHHhcCccc
Q 037432 92 ACHINGTLVPLLKDAGALW 110 (111)
Q Consensus 92 ~~~~~g~L~~~l~~~g~~~ 110 (111)
+..++......|+..|-+|
T Consensus 93 ~~l~~~g~~~~lETngti~ 111 (212)
T COG0602 93 ELLKRLGFRIALETNGTIP 111 (212)
T ss_pred HHHHhCCceEEecCCCCcc
Confidence 6655544555555555554
No 336
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=63.31 E-value=11 Score=21.42 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=31.4
Q ss_pred EEEEEeCCChhhH----HHHHHHhhC-C--CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEE
Q 037432 19 VVLFSISGCCMCT----VAKRLLFSL-G--VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI 77 (111)
Q Consensus 19 vvif~~~~Cp~C~----~~~~~l~~~-~--v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v 77 (111)
..+|....-|-+. .+++++++. + ...+.+|+.++|+ +++..+. -..|++
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~-------lAe~~~i---vAtPtL 59 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQ-------LAEEDKI---VATPTL 59 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHh-------HHhhCCE---EEechh
Confidence 4567777777776 445556554 3 3447889988877 5555555 555654
No 337
>PRK00766 hypothetical protein; Provisional
Probab=63.29 E-value=18 Score=24.64 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=31.3
Q ss_pred CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccH--HHHHHH
Q 037432 41 GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIE--TLMACH 94 (111)
Q Consensus 41 ~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~--~~~~~~ 94 (111)
|+-+..+.+|-.+....+.+.+...... ..+=.|+++|--+|||+ |+..++
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r---~~i~~V~L~Git~agFNvvD~~~l~ 94 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHK---GQLRVIMLDGITYGGFNVVDIEELY 94 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccc---cceEEEEECCEeeeeeEEecHHHHH
Confidence 4445677777666655544333332222 46667899999999996 445444
No 338
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=61.87 E-value=24 Score=21.05 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=38.9
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCc------chHHHHHHHHHHhCCCCCCcccEEEECC
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHV------AGREIQAVLFQLSSNGQHQTVPAIFVGG 81 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~------~~~~~~~~l~~~~g~~~~~~vP~vfi~g 81 (111)
|.+++.++|.=..-++.+.+..+.++..++..... ....+...+.+.... .....+|+|+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~vl~iDe 66 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKS---AKPCVLFIDE 66 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHT---STSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccccccccccc---ccceeeeecc
Confidence 56888999999999999999999887777664321 123333334333222 2135668887
No 339
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=61.28 E-value=36 Score=22.32 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=11.3
Q ss_pred CcEEEEEe--CCChhhH
Q 037432 17 NAVVLFSI--SGCCMCT 31 (111)
Q Consensus 17 ~~vvif~~--~~Cp~C~ 31 (111)
.+|++|+. .++|.|.
T Consensus 31 k~VVLyFYPk~~TpgCT 47 (157)
T COG1225 31 KPVVLYFYPKDFTPGCT 47 (157)
T ss_pred CcEEEEECCCCCCCcch
Confidence 36888774 5799996
No 340
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.92 E-value=66 Score=23.61 Aligned_cols=65 Identities=15% Similarity=0.080 Sum_probs=42.5
Q ss_pred cEEEEEeCC-----ChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEEC-CEEEeccHHHH
Q 037432 18 AVVLFSISG-----CCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVG-GKFLGGIETLM 91 (111)
Q Consensus 18 ~vvif~~~~-----Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~-g~~igg~~~~~ 91 (111)
.+.+|+.++ ||.|..+.-+++=.+- ...+++..++. .++. ..+|.+..+ |..|+|++++.
T Consensus 3 ~L~~~~~~~glptid~~sL~~l~y~kl~~~-~l~v~~ssN~~----------~s~s---g~LP~l~~~ng~~va~~~~iv 68 (313)
T KOG3028|consen 3 ELHIWSGGYGLPTIDPDSLAALIYLKLAGA-PLKVVVSSNPW----------RSPS---GKLPYLITDNGTKVAGPVKIV 68 (313)
T ss_pred eEEEecCCCCCCCcChhHHHHHHHHHHhCC-CceeEeecCCC----------CCCC---CCCCeEEecCCceeccHHHHH
Confidence 355666543 9999999988876662 23344443333 2233 679998655 49999999888
Q ss_pred HHHHc
Q 037432 92 ACHIN 96 (111)
Q Consensus 92 ~~~~~ 96 (111)
...+.
T Consensus 69 ~~L~k 73 (313)
T KOG3028|consen 69 QFLKK 73 (313)
T ss_pred HHHHH
Confidence 76543
No 341
>PRK10670 hypothetical protein; Provisional
Probab=59.88 E-value=19 Score=23.39 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=30.1
Q ss_pred HHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE
Q 037432 32 VAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV 79 (111)
Q Consensus 32 ~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi 79 (111)
.+.++|++.+++|+..++++.+......++..+..|......+-++++
T Consensus 3 ~~~~~L~~~~i~y~~~~~~h~~~~~~~~~~~a~~lgv~~~~i~Ktlv~ 50 (159)
T PRK10670 3 PAVKLLEKNKISFTLHTYEHDPAETNFGDEVVRKLGLNADQVYKTLLV 50 (159)
T ss_pred HHHHHHHHCCCCeEEEeeccCCcccchHHHHHHHhCCCHHHeEEEEEE
Confidence 577899999999998776654432111124566667633345667765
No 342
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=59.76 E-value=5.4 Score=26.25 Aligned_cols=19 Identities=32% Similarity=0.544 Sum_probs=14.0
Q ss_pred EEEEEeCCChhhHHHHHHH
Q 037432 19 VVLFSISGCCMCTVAKRLL 37 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l 37 (111)
|.+|+-.-||+|--+...|
T Consensus 1 I~~~~D~~cP~cyl~~~~l 19 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRL 19 (201)
T ss_pred CeEEecCcCccHHHHHHHH
Confidence 4588999999997544444
No 343
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.73 E-value=16 Score=24.79 Aligned_cols=35 Identities=43% Similarity=0.610 Sum_probs=23.6
Q ss_pred HHHhhcCCc-EEEEE-eCCChhhHHH-------HHHHhhCCCCc
Q 037432 10 VTHLASSNA-VVLFS-ISGCCMCTVA-------KRLLFSLGVGP 44 (111)
Q Consensus 10 ~~~~~~~~~-vvif~-~~~Cp~C~~~-------~~~l~~~~v~~ 44 (111)
+.+++++++ +|+|. +++|--|++. +.+|+++|+..
T Consensus 44 ~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~L 87 (197)
T KOG4498|consen 44 VTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVL 87 (197)
T ss_pred hHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEE
Confidence 455677666 55555 6899999854 55666667653
No 344
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=58.07 E-value=42 Score=24.88 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=44.7
Q ss_pred CCcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCc--chHHHHHHHHHHhCCCCCCcccEE--EECC-EEEeccHHH
Q 037432 16 SNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHV--AGREIQAVLFQLSSNGQHQTVPAI--FVGG-KFLGGIETL 90 (111)
Q Consensus 16 ~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~--~~~~~~~~l~~~~g~~~~~~vP~v--fi~g-~~igg~~~~ 90 (111)
..+.++|.+..+.+|. .+...-+|+....|.++.+- +..++++.+.+.... ..+|.+ ..-| ...|.+|++
T Consensus 139 ~~~~~i~~s~~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~---g~~p~~vvat~Gtt~~Ga~D~l 213 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIAN---GKTPFAVVATAGTTNTGAIDPL 213 (373)
T ss_dssp CSSEEEEEETTS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHT---TEEEEEEEEEBS-TTTSBB-SH
T ss_pred ccccccccccccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccc---cccceeeeccCCCcccccccCH
Confidence 3568899989888886 55666667877777777632 345555666655554 567743 2334 456788887
Q ss_pred HHH
Q 037432 91 MAC 93 (111)
Q Consensus 91 ~~~ 93 (111)
.+.
T Consensus 214 ~~i 216 (373)
T PF00282_consen 214 EEI 216 (373)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 345
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=57.92 E-value=12 Score=24.64 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=17.7
Q ss_pred EEEeCCChhhHHHHHHHhhC----C--CCcEEEEc
Q 037432 21 LFSISGCCMCTVAKRLLFSL----G--VGPTIVEL 49 (111)
Q Consensus 21 if~~~~Cp~C~~~~~~l~~~----~--v~~~~i~v 49 (111)
+|+-|.|++|....+.+.++ + +.++.+-.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~ 36 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPG 36 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEc
Confidence 68899999998777776654 3 44555544
No 346
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=57.74 E-value=44 Score=21.13 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=28.6
Q ss_pred HHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE
Q 037432 31 TVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV 79 (111)
Q Consensus 31 ~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi 79 (111)
.++.++|++.+++|..++........ ++.+..|......+-++++
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t~~----~~a~~~~~~~~~~~Ktll~ 46 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTSE----EVAAIRGTELGQGAKALLC 46 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCHH----HHHHHhCCCcccceEEEEE
Confidence 36788999999999998876544433 3445555422234555554
No 347
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=57.67 E-value=25 Score=24.09 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=38.0
Q ss_pred HHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHH
Q 037432 32 VAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACH 94 (111)
Q Consensus 32 ~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~ 94 (111)
.+..||++..|+..-+|=-...-.--+++.|.-.-+- -|-|.+++-+++-||.|--+++.
T Consensus 130 ~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnL---Vt~PrLvfMDEPTGGLDVSVQAR 189 (258)
T COG4107 130 EAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNL---VTRPRLVFMDEPTGGLDVSVQAR 189 (258)
T ss_pred HHHHHHHhcccCcccccCcccccchHHHHHHHHHHHh---ccCCceEEecCCCCCcchhhHHH
Confidence 5667888776665544322111223344556554455 78899999999999998665553
No 348
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=57.63 E-value=42 Score=20.57 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=41.6
Q ss_pred HHHHHHHhhcC---CcEEEEEeCCChhh----HHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE
Q 037432 6 TYEIVTHLASS---NAVVLFSISGCCMC----TVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF 78 (111)
Q Consensus 6 ~~~~~~~~~~~---~~vvif~~~~Cp~C----~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf 78 (111)
..+.+..+-.. ..+.++....-|.. +...+..++.|+.+..+.+..+....++.+.+.+...- ..|=.|+
T Consensus 16 l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D---~~V~GIl 92 (117)
T PF00763_consen 16 LKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED---PSVHGIL 92 (117)
T ss_dssp HHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH----TT-SEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC---CCCCEEE
Confidence 33444444333 44555444444544 46667778889999999998887778888788877754 5554444
Q ss_pred E
Q 037432 79 V 79 (111)
Q Consensus 79 i 79 (111)
+
T Consensus 93 v 93 (117)
T PF00763_consen 93 V 93 (117)
T ss_dssp E
T ss_pred E
Confidence 3
No 349
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=57.06 E-value=20 Score=23.36 Aligned_cols=29 Identities=17% Similarity=0.427 Sum_probs=24.7
Q ss_pred cCCcEEEEEeCCChhhHHHHHHHhhCCCC
Q 037432 15 SSNAVVLFSISGCCMCTVAKRLLFSLGVG 43 (111)
Q Consensus 15 ~~~~vvif~~~~Cp~C~~~~~~l~~~~v~ 43 (111)
...+|++|-.++|+.+..+...|...|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 45679999999999999999999998865
No 350
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=56.15 E-value=39 Score=19.76 Aligned_cols=41 Identities=7% Similarity=-0.053 Sum_probs=27.1
Q ss_pred HHHHHhhcCCcEEEEEeCCChhh--HHHHHHHhhCCCCcEEEE
Q 037432 8 EIVTHLASSNAVVLFSISGCCMC--TVAKRLLFSLGVGPTIVE 48 (111)
Q Consensus 8 ~~~~~~~~~~~vvif~~~~Cp~C--~~~~~~l~~~~v~~~~i~ 48 (111)
..+...+....+||+..+.+.|. ..+++..++.++++.+..
T Consensus 40 ~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 40 SRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred hHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 34666666777777666666554 577777777777766554
No 351
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=55.60 E-value=76 Score=23.25 Aligned_cols=87 Identities=7% Similarity=-0.002 Sum_probs=53.4
Q ss_pred hhHHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEc----------cCCcchHHHHHHHHHHhCCCCCCc
Q 037432 4 EKTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVEL----------DHHVAGREIQAVLFQLSSNGQHQT 73 (111)
Q Consensus 4 ~~~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v----------~~~~~~~~~~~~l~~~~g~~~~~~ 73 (111)
-++.+.+-.+++..-+.||+-..+..+..+.++.+++++++-.... ...|......-++...++. ++
T Consensus 44 f~~~~~~C~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~~~~~p~~~~ai~d~i~~~~w---k~ 120 (370)
T cd06389 44 FAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQW---DK 120 (370)
T ss_pred HHHHHHHHHHhhcCcEEEEecCCHHHHHHHHHhhccCCCCeeeecCCCCCCCceEEEecchhhhHHHHHHHhcCC---cE
Confidence 3456677778888888899988899999999999999998754221 1112211111233344454 88
Q ss_pred ccEEEECCEEEeccHHHHHH
Q 037432 74 VPAIFVGGKFLGGIETLMAC 93 (111)
Q Consensus 74 vP~vfi~g~~igg~~~~~~~ 93 (111)
+=.++-++.-.+..+++.+.
T Consensus 121 vailYdsd~gl~~lq~l~~~ 140 (370)
T cd06389 121 FAYLYDSDRGLSTLQAVLDS 140 (370)
T ss_pred EEEEecCchHHHHHHHHHHh
Confidence 86666544333444444444
No 352
>PF15616 TerY-C: TerY-C metal binding domain
Probab=54.86 E-value=3.8 Score=26.11 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=10.2
Q ss_pred EEEeCCChhhHHHH
Q 037432 21 LFSISGCCMCTVAK 34 (111)
Q Consensus 21 if~~~~Cp~C~~~~ 34 (111)
+...|+||+|-...
T Consensus 74 L~g~PgCP~CGn~~ 87 (131)
T PF15616_consen 74 LIGAPGCPHCGNQY 87 (131)
T ss_pred hcCCCCCCCCcChh
Confidence 34569999997654
No 353
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=54.22 E-value=24 Score=19.72 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=13.6
Q ss_pred CcccEEEECCEEEecc
Q 037432 72 QTVPAIFVGGKFLGGI 87 (111)
Q Consensus 72 ~~vP~vfi~g~~igg~ 87 (111)
..-|.+.|||+.++..
T Consensus 45 ~~gP~v~V~~~~~~~~ 60 (72)
T cd03082 45 ERAPAALVGQRPVDGA 60 (72)
T ss_pred CCCCeEEECCEEeCCc
Confidence 5679999999998776
No 354
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=53.76 E-value=53 Score=20.91 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=28.4
Q ss_pred HHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE
Q 037432 32 VAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV 79 (111)
Q Consensus 32 ~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi 79 (111)
++..+|++++++|+.++.......++ +.+..|......+-++++
T Consensus 3 ~~~~~L~~~~i~~~~~~~~~~~t~e~----~a~~~~~~~~~~~Ktlv~ 46 (156)
T cd04335 3 ELLALLDELGIAYETVEHPPVFTVEE----ADEVLGELPGAHTKNLFL 46 (156)
T ss_pred HHHHHHHHCCCceEEEecCCcCCHHH----HHHhhccCCCceEEEEEE
Confidence 57889999999999988765444433 434444322256666665
No 355
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.33 E-value=6.3 Score=28.32 Aligned_cols=13 Identities=15% Similarity=0.467 Sum_probs=9.2
Q ss_pred EEEE-eCCChhhHH
Q 037432 20 VLFS-ISGCCMCTV 32 (111)
Q Consensus 20 vif~-~~~Cp~C~~ 32 (111)
.+-+ ++.||||++
T Consensus 265 civGKkqtCPYCKe 278 (328)
T KOG1734|consen 265 CIVGKKQTCPYCKE 278 (328)
T ss_pred eeecCCCCCchHHH
Confidence 3444 578999985
No 356
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=52.91 E-value=18 Score=24.97 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=34.5
Q ss_pred EEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECC
Q 037432 22 FSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGG 81 (111)
Q Consensus 22 f~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g 81 (111)
.++.+-|.|.-+...|++++..|..+..-..+... ...-+.- ...|++||-+
T Consensus 118 Ly~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~-----cIpNYPe---~nlPTl~VY~ 169 (240)
T KOG3170|consen 118 LYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATT-----CIPNYPE---SNLPTLLVYH 169 (240)
T ss_pred eeccccHHHHHHHHHHHHHhhcCCcceEEeccccc-----ccCCCcc---cCCCeEEEee
Confidence 56789999999999999998887544433332221 2222333 7889988743
No 357
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=52.80 E-value=39 Score=18.72 Aligned_cols=31 Identities=26% Similarity=0.466 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCC------C--CcccEEEECCEEEecc
Q 037432 57 EIQAVLFQLSSNGQ------H--QTVPAIFVGGKFLGGI 87 (111)
Q Consensus 57 ~~~~~l~~~~g~~~------~--~~vP~vfi~g~~igg~ 87 (111)
.++..|++..|... + .--=-|++++++||-.
T Consensus 4 klq~yLr~~f~n~~i~v~~rpk~~dsaEV~~g~EfiGvi 42 (63)
T PF11324_consen 4 KLQAYLRRTFGNPGITVKARPKKDDSAEVYIGDEFIGVI 42 (63)
T ss_pred HHHHHHHHHhCCCceEEEcCCCCCCceEEEeCCEEEEEE
Confidence 45567777775410 0 1111389999999965
No 358
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=52.77 E-value=20 Score=24.83 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=17.2
Q ss_pred cEEEEEeCCChhhH-----HHHHHHhhC
Q 037432 18 AVVLFSISGCCMCT-----VAKRLLFSL 40 (111)
Q Consensus 18 ~vvif~~~~Cp~C~-----~~~~~l~~~ 40 (111)
.|++|+-+-||+|. ...+++...
T Consensus 42 ~ItlyyEaLCPdc~~Fi~~qL~p~~~~~ 69 (220)
T KOG3160|consen 42 NITLYYEALCPDCSKFIRNQLYPFFDNL 69 (220)
T ss_pred EEEEEEEecCccHHHHHHHHHHHHHhhc
Confidence 48899999999997 344555554
No 359
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=52.32 E-value=84 Score=22.42 Aligned_cols=101 Identities=19% Similarity=0.239 Sum_probs=52.3
Q ss_pred CCchhHHHHHHHhh-c-CCcEEEEEeCC--ChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccE
Q 037432 1 MKLEKTYEIVTHLA-S-SNAVVLFSISG--CCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPA 76 (111)
Q Consensus 1 m~~~~~~~~~~~~~-~-~~~vvif~~~~--Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~ 76 (111)
|...+..+...+++ . ...+++|.+|+ -|.=.+++.+|...+++.-.+- ..|..+ .+++|.+. | +=.
T Consensus 42 m~pe~~e~~~~~~~~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~--D~p~~k-~kd~l~~~-g------~GY 111 (276)
T PF01993_consen 42 MGPEDVEEVVTKMLKEWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVIS--DAPTKK-AKDALEEE-G------FGY 111 (276)
T ss_dssp -SHHHHHHHHHHHHHHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEE--EGGGGG-GHHHHHHT-T-------EE
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEc--CCCchh-hHHHHHhc-C------CcE
Confidence 33444445454443 2 44588888775 7778899999999999875543 223222 12456542 2 224
Q ss_pred EEECCE-EEeccHHHH---HHH-HcCChHHHHHhcCcccC
Q 037432 77 IFVGGK-FLGGIETLM---ACH-INGTLVPLLKDAGALWL 111 (111)
Q Consensus 77 vfi~g~-~igg~~~~~---~~~-~~g~L~~~l~~~g~~~~ 111 (111)
|.+... .||.--++. ++. =++.+.+.|...|++||
T Consensus 112 Iivk~DpMIGArREFLDP~EMa~fNaD~~kVLa~tGa~Rl 151 (276)
T PF01993_consen 112 IIVKADPMIGARREFLDPVEMALFNADVLKVLAITGAFRL 151 (276)
T ss_dssp EEETTS------TTT--HHHHHHHHHHHHHHHHHTTHHHH
T ss_pred EEEecCccccccccccCHHHHHHhhhhHHHHHHhhhHHHH
Confidence 666554 455433333 332 25677778887777663
No 360
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=51.73 E-value=14 Score=20.70 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=14.0
Q ss_pred eCCChhhH-HHHHHHhhCCC
Q 037432 24 ISGCCMCT-VAKRLLFSLGV 42 (111)
Q Consensus 24 ~~~Cp~C~-~~~~~l~~~~v 42 (111)
+-=||.|+ .|++.+++.+|
T Consensus 15 tLPC~~Cr~HA~~ai~kNNi 34 (70)
T PF04805_consen 15 TLPCPECRIHAKEAIQKNNI 34 (70)
T ss_pred cCCCHHHHHHHHHHHHhcCc
Confidence 34599997 78888877654
No 361
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=51.41 E-value=20 Score=21.57 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=32.5
Q ss_pred ChhhHHHHHHHhhCC---------CCcEEEEccC--CcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccH
Q 037432 27 CCMCTVAKRLLFSLG---------VGPTIVELDH--HVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIE 88 (111)
Q Consensus 27 Cp~C~~~~~~l~~~~---------v~~~~i~v~~--~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~ 88 (111)
=|.-..++.++...| -.|.....+. .....++.+.+.+.... -.-|.|..+++.+-||+
T Consensus 35 p~s~~eL~~~l~~~g~~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~L---ikRPIi~~~~~~~iGf~ 104 (105)
T cd03035 35 GLDAATLERWLAKVGWETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSL---IKRPVLETGGKVLVGFS 104 (105)
T ss_pred CCCHHHHHHHHHHhChHHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCe---eecceEEeCCEEEEeeC
Confidence 345556667776655 3455444441 11223333344433333 56698888888888876
No 362
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=49.94 E-value=98 Score=22.50 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=15.9
Q ss_pred eccHHHHHHHHcCChHHHHHhcCccc
Q 037432 85 GGIETLMACHINGTLVPLLKDAGALW 110 (111)
Q Consensus 85 gg~~~~~~~~~~g~L~~~l~~~g~~~ 110 (111)
|.-+-...+.++|-|++++ +.|.-|
T Consensus 115 GhG~i~~aL~~sG~L~~l~-~~G~~y 139 (300)
T cd00897 115 GHGDIFESLYNSGLLDTLL-AQGKEY 139 (300)
T ss_pred CCchHHHHHHHCCcHHHHH-hcCCEE
Confidence 4446666777888887755 445444
No 363
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=49.20 E-value=30 Score=21.98 Aligned_cols=23 Identities=17% Similarity=0.418 Sum_probs=17.6
Q ss_pred CcEEEEE-eCCChhhHHHHHHHhh
Q 037432 17 NAVVLFS-ISGCCMCTVAKRLLFS 39 (111)
Q Consensus 17 ~~vvif~-~~~Cp~C~~~~~~l~~ 39 (111)
..|.+|+ .+-|+.|..+-.-|..
T Consensus 97 G~i~l~te~~pC~SC~~vi~qF~~ 120 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSNVIEQFKK 120 (133)
T ss_pred ceEEEEecCCcChhHHHHHHHHHH
Confidence 4689999 5889999976655544
No 364
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=48.60 E-value=5 Score=26.70 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=17.0
Q ss_pred chhHHHHHHHhhcCCcEEEEEeCCChhhH
Q 037432 3 LEKTYEIVTHLASSNAVVLFSISGCCMCT 31 (111)
Q Consensus 3 ~~~~~~~~~~~~~~~~vvif~~~~Cp~C~ 31 (111)
...++++.+.. ..|+--++|.||.|-
T Consensus 136 ~~~ARafa~ra---~~VVaAGRP~CPlCg 161 (171)
T PF11290_consen 136 PGQARAFARRA---REVVAAGRPPCPLCG 161 (171)
T ss_pred HHHHHHHHHHH---HHHHhCCCCCCCCCC
Confidence 34455555554 446667789999995
No 365
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=48.20 E-value=41 Score=25.76 Aligned_cols=39 Identities=31% Similarity=0.527 Sum_probs=30.2
Q ss_pred HHhhcCCcEEEEE-----eCCChhhHHHHHHHhhCCCCcEEEEc
Q 037432 11 THLASSNAVVLFS-----ISGCCMCTVAKRLLFSLGVGPTIVEL 49 (111)
Q Consensus 11 ~~~~~~~~vvif~-----~~~Cp~C~~~~~~l~~~~v~~~~i~v 49 (111)
..+.+.+.||+=. -++|-||+-+++.|...|-+...+++
T Consensus 211 aAlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~ 254 (583)
T KOG2454|consen 211 AALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQV 254 (583)
T ss_pred HHHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhhe
Confidence 3455677777744 36799999999999999988776665
No 366
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=47.98 E-value=21 Score=29.37 Aligned_cols=55 Identities=13% Similarity=-0.033 Sum_probs=35.0
Q ss_pred hHHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCC
Q 037432 5 KTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSN 68 (111)
Q Consensus 5 ~~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~ 68 (111)
+..+.+...-+...+.+|++.|||.-.++ -+|.++-+|.+.. .++++.|.+++|+
T Consensus 1043 E~~deV~~~k~~~sL~i~vRRW~Ps~~e~--------~pFQEV~Ld~~~~-~E~Re~LS~ISgI 1097 (1203)
T KOG4598|consen 1043 EITDEVMIGKPGESLPIMVRRWRPSTVEV--------NPFQEVLLDANAE-VEFREALSKISGI 1097 (1203)
T ss_pred HHHhhcccCCCCccchhhheeccccceec--------CCceeEEecCcch-HHHHHHHHHhcCC
Confidence 34444444555666899999999954322 1466777776644 3466677777776
No 367
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=47.67 E-value=20 Score=21.33 Aligned_cols=38 Identities=13% Similarity=-0.005 Sum_probs=25.2
Q ss_pred HHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhCCCCc
Q 037432 6 TYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGP 44 (111)
Q Consensus 6 ~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~v~~ 44 (111)
+.+.+++.... ++..|..|...+-..+.+++.+.|.+|
T Consensus 85 ~~~~l~~~~g~-~~~~f~~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 85 SREILEEITGR-PPKGFRYPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp HHHHHHHHHSS-EESEEE-GGGEECHHHHHHHHHTT-EE
T ss_pred HHHHHHHHhCC-CCcEEECCCCCCCHHHHHHHHHcCCCc
Confidence 33444554444 677788888888888888888888765
No 368
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=47.46 E-value=98 Score=21.80 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=45.5
Q ss_pred CCchhHHHHHHHhhcCCcEE--EEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHH-HHHHHHHHhCCCCCCcccEE
Q 037432 1 MKLEKTYEIVTHLASSNAVV--LFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGRE-IQAVLFQLSSNGQHQTVPAI 77 (111)
Q Consensus 1 m~~~~~~~~~~~~~~~~~vv--if~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~-~~~~l~~~~g~~~~~~vP~v 77 (111)
|.++.....+++.+...+.+ .+....+| .+-.++...|.+|..+|.++.+-..+ +.+.+...... ...|.|
T Consensus 1 ~~~~~~~n~lk~~l~~g~~~~g~~~~~~sp---~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~---g~~~lV 74 (256)
T PRK10558 1 MNNDVFPNKFKAALAAKQVQIGCWSALANP---ITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGS---ASAPVV 74 (256)
T ss_pred CCCCccCHHHHHHHHcCCceEEEEEcCCCc---HHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhc---CCCcEE
Confidence 34444455567766655532 23333344 78888999999999999998775433 33334444344 566666
Q ss_pred EECC
Q 037432 78 FVGG 81 (111)
Q Consensus 78 fi~g 81 (111)
-+-+
T Consensus 75 Rvp~ 78 (256)
T PRK10558 75 RVPT 78 (256)
T ss_pred ECCC
Confidence 6644
No 369
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=47.29 E-value=7.6 Score=24.53 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=25.1
Q ss_pred HHHHHhCCCCCCcccEEEECCEEEeccHHHHHH-----HHcCChHHHHHhcCcccC
Q 037432 61 VLFQLSSNGQHQTVPAIFVGGKFLGGIETLMAC-----HINGTLVPLLKDAGALWL 111 (111)
Q Consensus 61 ~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~-----~~~g~L~~~l~~~g~~~~ 111 (111)
+|.+.+|.. -..+|.+++ +.||.++.+.+ .+.+.|+.+++..+.+|+
T Consensus 72 ~Laery~i~-ke~fPv~~L---F~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~yi 123 (126)
T PF07912_consen 72 ELAERYKID-KEDFPVIYL---FVGDKEEPVRYPFDGDVTADNLQRFVKSNTGLYI 123 (126)
T ss_dssp HHHHHTT-S-CCC-SEEEE---EESSTTSEEEE-TCS-S-HHHHHHHHHHTSS--T
T ss_pred HHHHHhCCC-cccCCEEEE---ecCCCCCCccCCccCCccHHHHHHHHHhCCCeee
Confidence 599999861 146898742 22233322222 233568899999888875
No 370
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=47.29 E-value=24 Score=19.06 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=27.6
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCE
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGK 82 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~ 82 (111)
+.+|+...=.-+..++.+|++.||++...+-....- .-..|. ...+.|+|..+
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~--------~g~~g~---~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGY--------AGEPGT---GGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----SS-----------S-----SSSEEEEEEGG
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccchh--------hcccCc---cCceEEEECHH
Confidence 356676666678899999999999988766543322 111343 44588888764
No 371
>PF09248 DUF1965: Domain of unknown function (DUF1965); InterPro: IPR015328 Members of this family of fungal domains adopt a structure that consists of an alpha/beta motif. Their exact function has not, as yet, been determined []. ; PDB: 1N9E_A 1RKY_A 1W7C_A 3PGB_A.
Probab=47.17 E-value=27 Score=19.99 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=23.2
Q ss_pred cccEEEECCEEEeccHHHHHHHHcCChHHHHHhc
Q 037432 73 TVPAIFVGGKFLGGIETLMACHINGTLVPLLKDA 106 (111)
Q Consensus 73 ~vP~vfi~g~~igg~~~~~~~~~~g~L~~~l~~~ 106 (111)
.+=-++.||++.-..+++.++..+|.+.++-...
T Consensus 26 kv~gw~Yn~~fy~tteeFr~A~~~~~f~k~~~n~ 59 (74)
T PF09248_consen 26 KVLGWVYNGQFYPTTEEFREAWWSGDFKKLGPNV 59 (74)
T ss_dssp EEEEEEETTEEESSHHHHHHHHCSTT--------
T ss_pred EEEEEEECCEEcccHHHHHHHHhCCCceecCCCC
Confidence 4446799999999999999999999998865443
No 372
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.96 E-value=72 Score=22.28 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=47.5
Q ss_pred CCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHHc--CChHHH
Q 037432 25 SGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHIN--GTLVPL 102 (111)
Q Consensus 25 ~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~~--g~L~~~ 102 (111)
+.-..|-+++.+|+-.+++|.++--+..+ + .+.- ..+|-+-+|...+.+|.-|++..+. ..|.++
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~Nae--------f--mSP~---G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~ 98 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRANAE--------F--MSPG---GKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSW 98 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecCCcc--------c--cCCC---CCCceeeecchhhhhhhHHHHHHHHhccchhhh
Confidence 56778999999999999998765433211 2 1222 6899999999999999999887643 344444
Q ss_pred H
Q 037432 103 L 103 (111)
Q Consensus 103 l 103 (111)
+
T Consensus 99 l 99 (257)
T KOG3027|consen 99 L 99 (257)
T ss_pred h
Confidence 4
No 373
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=46.91 E-value=13 Score=20.25 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=9.8
Q ss_pred CCChhhHHHHHHH
Q 037432 25 SGCCMCTVAKRLL 37 (111)
Q Consensus 25 ~~Cp~C~~~~~~l 37 (111)
|-||.|.++..-|
T Consensus 45 PVCP~Ck~iye~l 57 (58)
T PF11238_consen 45 PVCPECKEIYESL 57 (58)
T ss_pred CCCcCHHHHHHhc
Confidence 4699999876644
No 374
>PLN02263 serine decarboxylase
Probab=46.88 E-value=93 Score=24.17 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=43.1
Q ss_pred EEEEeCCChhhHHHHHHHhhCCCCcEEEEccCC--cchHHHHHHHHHHhCCCCCCcccEEEE---CCEEEeccHHHHHHH
Q 037432 20 VLFSISGCCMCTVAKRLLFSLGVGPTIVELDHH--VAGREIQAVLFQLSSNGQHQTVPAIFV---GGKFLGGIETLMACH 94 (111)
Q Consensus 20 vif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~--~~~~~~~~~l~~~~g~~~~~~vP~vfi---~g~~igg~~~~~~~~ 94 (111)
++|......+|.. +...=+|++...+.++.. -+...+++.+.+ . ...|.+++ +-...|.+|++.+
T Consensus 180 vvy~S~~aH~Sv~--KAa~llgi~~~~Vp~d~~g~mD~~aL~~aI~~---d---~~~P~iVvataGTT~~GAiDpi~e-- 249 (470)
T PLN02263 180 ILYASRESHYSVF--KAARMYRMECVKVDTLVSGEIDCADFKAKLLA---N---KDKPAIINVNIGTTVKGAVDDLDL-- 249 (470)
T ss_pred EEEEcCCccHHHH--HHHHhcCCcceEeccCCCCcCcHHHHHHHHHh---C---CCCcEEEEEEecCCCCcCCCCHHH--
Confidence 5566666666642 333446777777777643 233433333322 2 34576654 6677899998876
Q ss_pred HcCChHHHHHhcCc
Q 037432 95 INGTLVPLLKDAGA 108 (111)
Q Consensus 95 ~~g~L~~~l~~~g~ 108 (111)
+.+++++.|+
T Consensus 250 ----Ia~i~~~~g~ 259 (470)
T PLN02263 250 ----VIKTLEECGF 259 (470)
T ss_pred ----HHHHHHHcCC
Confidence 4556666665
No 375
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=46.66 E-value=27 Score=18.32 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=17.0
Q ss_pred CCChhhH-HHHHHHhhC-CCCcEEEEc
Q 037432 25 SGCCMCT-VAKRLLFSL-GVGPTIVEL 49 (111)
Q Consensus 25 ~~Cp~C~-~~~~~l~~~-~v~~~~i~v 49 (111)
=.|+.|. ++.+.|.+. |+.-..+|+
T Consensus 7 m~C~~C~~~v~~~l~~~~GV~~v~vd~ 33 (62)
T PF00403_consen 7 MTCEGCAKKVEKALSKLPGVKSVKVDL 33 (62)
T ss_dssp TTSHHHHHHHHHHHHTSTTEEEEEEET
T ss_pred cccHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 4799995 778888877 664433333
No 376
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=46.32 E-value=49 Score=23.44 Aligned_cols=91 Identities=9% Similarity=0.038 Sum_probs=49.9
Q ss_pred hcCCcEEEEEeCCChhhHHHHHHHhhCCCCcEEE--------EccCCcchHHHHHHHHHHhCCCCCCcccE---EEECCE
Q 037432 14 ASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIV--------ELDHHVAGREIQAVLFQLSSNGQHQTVPA---IFVGGK 82 (111)
Q Consensus 14 ~~~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i--------~v~~~~~~~~~~~~l~~~~g~~~~~~vP~---vfi~g~ 82 (111)
++.+++.+|+.-.=..-..+...|++.||+|+.. -|++... .+.+..|+. .|.. ...... +|-.+.
T Consensus 16 l~gC~~~LysgL~~~dA~~I~a~L~~~gI~y~~~~~~~G~tI~Vp~~~~-~~Ar~~La~-~GLP-~~g~~~~~~lFd~~~ 92 (249)
T PRK15348 16 LTACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF-INAVELLRL-NGYP-HRQFTTADKMFPANQ 92 (249)
T ss_pred HhcCChHHHcCCCHHHHHHHHHHHHHcCCCceEeeCCCCeEEEecHHHH-HHHHHHHHH-cCCC-CCCCccHHHhCCccc
Confidence 4556677888666666778999999999999642 2222111 122223333 3541 111111 343344
Q ss_pred EEeccHHHHH---HHHcCChHHHHHhcC
Q 037432 83 FLGGIETLMA---CHINGTLVPLLKDAG 107 (111)
Q Consensus 83 ~igg~~~~~~---~~~~g~L~~~l~~~g 107 (111)
+.-|..+..+ +.++|+|...|+...
T Consensus 93 l~~t~te~~qki~y~regELarTI~~id 120 (249)
T PRK15348 93 LVVSPQEEQQKINFLKEQRIEGMLSQME 120 (249)
T ss_pred cccChhHHHHHHHHHHHHHHHHHHHhCC
Confidence 4333333333 456899999997643
No 377
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=46.28 E-value=1.2e+02 Score=22.35 Aligned_cols=87 Identities=9% Similarity=-0.026 Sum_probs=54.8
Q ss_pred hhHHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhCCCCcEEE----------EccCCcchHHHHHHHHHHhCCCCCCc
Q 037432 4 EKTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIV----------ELDHHVAGREIQAVLFQLSSNGQHQT 73 (111)
Q Consensus 4 ~~~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i----------~v~~~~~~~~~~~~l~~~~g~~~~~~ 73 (111)
.++.+++-.+++..-+.||+-+.|..-..+..+...+.|++-.. -|...|........+...+|. +.
T Consensus 43 f~~~~~~C~~~~~gV~AI~Gp~s~~~a~~v~sic~~~~vP~i~~~~~~~~~~~~~i~~~P~~~~Ai~diI~~~~W---~~ 119 (364)
T cd06390 43 FEMTYTFCSQFSKGVYAIFGFYDRKTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPELQDALISVIEHYKW---QK 119 (364)
T ss_pred HHHHHHHHHHhhcCceEEEccCChhHHHHHHHhhcCCCCCceecCCCCCCCCceEEEeChhHHHHHHHHHHHcCC---cE
Confidence 34556677778887788899888877788888888888876432 112223222222344455564 88
Q ss_pred ccEEEECCEEEeccHHHHHH
Q 037432 74 VPAIFVGGKFLGGIETLMAC 93 (111)
Q Consensus 74 vP~vfi~g~~igg~~~~~~~ 93 (111)
|=.|+-++.-.++.+.+.+.
T Consensus 120 v~iIYd~d~g~~~lq~l~~~ 139 (364)
T cd06390 120 FVYIYDADRGLSVLQKVLDT 139 (364)
T ss_pred EEEEEeCCccHHHHHHHHHh
Confidence 87888666545555555544
No 378
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.19 E-value=31 Score=19.77 Aligned_cols=21 Identities=10% Similarity=-0.015 Sum_probs=18.0
Q ss_pred ChhhHHHHHHHhhCCCCcEEE
Q 037432 27 CCMCTVAKRLLFSLGVGPTIV 47 (111)
Q Consensus 27 Cp~C~~~~~~l~~~~v~~~~i 47 (111)
=.+|+++.++|.++++.|+-+
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~ 35 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHM 35 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeee
Confidence 469999999999999988654
No 379
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=44.92 E-value=18 Score=24.40 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=28.2
Q ss_pred CCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccH--HHHHHH
Q 037432 42 VGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIE--TLMACH 94 (111)
Q Consensus 42 v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~--~~~~~~ 94 (111)
+-+..+.+|-.+....+.+.... ... +.+=.|+++|--+|||+ |+.+++
T Consensus 37 v~~~~itvdG~DaT~~i~~m~~~-~~r---~~i~~v~LdGit~agFNiiD~~~l~ 87 (187)
T PF01949_consen 37 VAFGRITVDGMDATEAIIEMVKR-LFR---PDIRVVMLDGITFAGFNIIDIERLY 87 (187)
T ss_dssp EEEEEE-TT-S-HHHHHHHHHCC-TTT---TTEEEEEESSSEETTTEE--HHHHH
T ss_pred EEEEEEEECCchHHHHHHHHHHh-ccc---CcceEEEECCEeEEeeEEecHHHHH
Confidence 44566777766555543333322 233 66777899999999996 555554
No 380
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=43.89 E-value=85 Score=25.30 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=43.8
Q ss_pred CcEEEEE-eCCChhhHHHHHHHhhCCCCcEEEEcc-CCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHH
Q 037432 17 NAVVLFS-ISGCCMCTVAKRLLFSLGVGPTIVELD-HHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIET 89 (111)
Q Consensus 17 ~~vvif~-~~~Cp~C~~~~~~l~~~~v~~~~i~v~-~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~ 89 (111)
.+|.+.. ...|+.|.++...|.+.|+..+.+|.- --|-..++ +.++... ..+=..+-+|-..||+-.
T Consensus 502 ~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~l---l~~La~~---h~~~vtlEe~~~~GG~Gs 570 (627)
T COG1154 502 EKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEAL---LLELAKS---HDLVVTLEENVVDGGFGS 570 (627)
T ss_pred CcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHH---HHHHHhh---cCeEEEEecCcccccHHH
Confidence 3444433 578999999999999999999999864 23444443 3344442 222234567777899854
No 381
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=43.85 E-value=39 Score=21.65 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=14.5
Q ss_pred EEEE-EeCCChhhH--------HHHHHHhhC
Q 037432 19 VVLF-SISGCCMCT--------VAKRLLFSL 40 (111)
Q Consensus 19 vvif-~~~~Cp~C~--------~~~~~l~~~ 40 (111)
+.+| +.+.||.|. +++.+|.++
T Consensus 12 lF~~~~~~iCp~C~~~~e~~f~kV~~yLr~~ 42 (137)
T TIGR03826 12 LFVKTGRDVCPSCYEEEEREFEKVYKFLRKH 42 (137)
T ss_pred hhhhcCCccCHHHhHHHHHHHHHHHHHHHHC
Confidence 3344 356799996 567777655
No 382
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=43.71 E-value=70 Score=20.15 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=28.4
Q ss_pred HHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE
Q 037432 31 TVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV 79 (111)
Q Consensus 31 ~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi 79 (111)
.++..+|++.+++|+.+......... +++.+..|......+-++++
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~~t~---~e~a~~~~~~~~~~~K~l~~ 47 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPESTRTA---ALAAEALGCEPGQIAKSLVF 47 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCCCcchH---HHHHHHcCCChhHEEEEEEE
Confidence 46789999999999988887432222 24555565421234455553
No 383
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=43.55 E-value=26 Score=24.31 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=18.8
Q ss_pred EEeCCChhhHHHHHHHhhCCCC
Q 037432 22 FSISGCCMCTVAKRLLFSLGVG 43 (111)
Q Consensus 22 f~~~~Cp~C~~~~~~l~~~~v~ 43 (111)
+-+..||.++.+++.|++.++.
T Consensus 151 ~~t~~~pla~~~R~~Lrk~~~~ 172 (231)
T cd00755 151 SKTSGDPLARKVRKRLRKRGIF 172 (231)
T ss_pred eccccCcHHHHHHHHHHHcCCC
Confidence 4446799999999999999886
No 384
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=43.49 E-value=77 Score=21.45 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=34.1
Q ss_pred CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccH--HHHHHHH
Q 037432 41 GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIE--TLMACHI 95 (111)
Q Consensus 41 ~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~--~~~~~~~ 95 (111)
++.+..+.+|-.+....+. .+...++. ..+-.||.+|--+|||+ |+.++++
T Consensus 41 gv~~~~i~vDG~D~T~~i~-~~v~~~~~---~~~rvVlLdGIt~aGFNivDi~~l~~ 93 (185)
T COG1628 41 GVAFSLITVDGLDVTDAIS-DMVNRSKR---RDLRVVLLDGITFAGFNIVDIEALYK 93 (185)
T ss_pred eeEEEEEEecCchHHHHHH-HHHHHhhc---ccccEEEECCeeeccceEecHHHHHH
Confidence 4556778887665555443 34445554 44788999999999996 6666553
No 385
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.39 E-value=72 Score=21.73 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=18.9
Q ss_pred CcccEEEECCEEEeccHHHHHH
Q 037432 72 QTVPAIFVGGKFLGGIETLMAC 93 (111)
Q Consensus 72 ~~vP~vfi~g~~igg~~~~~~~ 93 (111)
-..|++|++++..-|.|-+-.+
T Consensus 175 fGaPtfivg~q~fwGqDRL~~l 196 (203)
T COG3917 175 FGAPTFIVGDQLFWGQDRLYQL 196 (203)
T ss_pred cCCCeEEECCeeeechhHHHHH
Confidence 7889999999999999877554
No 386
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=42.86 E-value=6.3 Score=26.31 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=16.3
Q ss_pred hhHHHHHHHhhcCCcEEEEEeCCChhhH
Q 037432 4 EKTYEIVTHLASSNAVVLFSISGCCMCT 31 (111)
Q Consensus 4 ~~~~~~~~~~~~~~~vvif~~~~Cp~C~ 31 (111)
..++++.+.+ ..|+--++|.||.|-
T Consensus 139 ~~ARafa~Ra---~~VVaAGRP~CPlCg 163 (177)
T TIGR03847 139 GQARAFAKRA---RRVVAAGRPPCPLCG 163 (177)
T ss_pred HHHHHHHHHH---HHHHhCCCCCCCCCC
Confidence 4455555544 446667789999994
No 387
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=42.76 E-value=1e+02 Score=20.76 Aligned_cols=65 Identities=26% Similarity=0.225 Sum_probs=42.2
Q ss_pred ChhhHHHHHHHhhC-CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHHcCChHHHHHh
Q 037432 27 CCMCTVAKRLLFSL-GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLKD 105 (111)
Q Consensus 27 Cp~C~~~~~~l~~~-~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~~g~L~~~l~~ 105 (111)
=.+...+.+.|.++ |.+...+++...++.. +.+.+ .-.||+.| |....+.+..++-.|.+.|++
T Consensus 45 ~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~---~~l~~---------ad~I~l~G---G~~~~~~~~l~~~~l~~~l~~ 109 (212)
T cd03146 45 DEYTARFYAAFESLRGVEVSHLHLFDTEDPL---DALLE---------ADVIYVGG---GNTFNLLAQWREHGLDAILKA 109 (212)
T ss_pred HHHHHHHHHHHhhccCcEEEEEeccCcccHH---HHHhc---------CCEEEECC---chHHHHHHHHHHcCHHHHHHH
Confidence 35677889999999 8887777654422211 12322 22578888 677777776666678887775
Q ss_pred c
Q 037432 106 A 106 (111)
Q Consensus 106 ~ 106 (111)
.
T Consensus 110 ~ 110 (212)
T cd03146 110 A 110 (212)
T ss_pred H
Confidence 3
No 388
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=42.75 E-value=1.3e+02 Score=24.80 Aligned_cols=67 Identities=22% Similarity=0.216 Sum_probs=41.9
Q ss_pred cEEEEE-eCCChhhHHHHHHHhhCCCCcEEEEccC-CcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHH
Q 037432 18 AVVLFS-ISGCCMCTVAKRLLFSLGVGPTIVELDH-HVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLM 91 (111)
Q Consensus 18 ~vvif~-~~~Cp~C~~~~~~l~~~~v~~~~i~v~~-~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~ 91 (111)
.|++.+ .+....|.++...|++.|+..+.+|+.. .|-..+...++.+.++. .|.+....+||+-+.+
T Consensus 569 dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~~k~~~-------vVTvEE~~~GG~Gs~V 637 (701)
T PLN02225 569 DVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNHKF-------LITVEEGCVGGFGSHV 637 (701)
T ss_pred CEEEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHhhcCe-------EEEEcCCCCCchHHHH
Confidence 355544 3456778888899999999999999854 34445433344443332 5555555568885433
No 389
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=42.35 E-value=43 Score=16.70 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=17.8
Q ss_pred EEECCEEEecc--HHHHHHHHcCChH
Q 037432 77 IFVGGKFLGGI--ETLMACHINGTLV 100 (111)
Q Consensus 77 vfi~g~~igg~--~~~~~~~~~g~L~ 100 (111)
+..||+..|-+ +++.++.++|++.
T Consensus 4 ~~~~g~~~GP~s~~el~~l~~~g~i~ 29 (45)
T PF14237_consen 4 YARNGQQQGPFSLEELRQLISSGEID 29 (45)
T ss_pred EeCCCeEECCcCHHHHHHHHHcCCCC
Confidence 34578888877 5788888888764
No 390
>PF03691 UPF0167: Uncharacterised protein family (UPF0167); InterPro: IPR005363 The proteins in this family are about 200 amino acids long and each contain 3 CXXC motifs.
Probab=40.99 E-value=31 Score=23.12 Aligned_cols=72 Identities=21% Similarity=0.180 Sum_probs=38.3
Q ss_pred CChhhHHHHHHHhhCCCCcE-EEEccCCcchHHHHHHHHHHh-CCCCCCcccE-----------EEECCEEEeccHHHHH
Q 037432 26 GCCMCTVAKRLLFSLGVGPT-IVELDHHVAGREIQAVLFQLS-SNGQHQTVPA-----------IFVGGKFLGGIETLMA 92 (111)
Q Consensus 26 ~Cp~C~~~~~~l~~~~v~~~-~i~v~~~~~~~~~~~~l~~~~-g~~~~~~vP~-----------vfi~g~~igg~~~~~~ 92 (111)
-||.|.+=-+.-+++.-.|. ..++.......+..++|..+| |. .++-+ -|++.. |.+|+.+
T Consensus 51 lCPwCIAdG~AA~kfdg~F~d~~~~~~~~~~~~~~~El~~RTPGy---~sWQqe~Wl~hC~D~CaFlG~v---g~~El~~ 124 (176)
T PF03691_consen 51 LCPWCIADGSAAKKFDGEFQDDADLEGVGIDPEKLEELFHRTPGY---SSWQQEYWLAHCDDYCAFLGYV---GWEELKA 124 (176)
T ss_pred cCHhHhcCcHhHHhcCeEeecchhcccccCCHHHHHHHHhcCCCC---cccccchhhhhcCCHHHhcCCC---CHHHHHH
Confidence 49999866666666655442 233333323444555676666 33 22222 244432 6677777
Q ss_pred HHHcCChHHHHHh
Q 037432 93 CHINGTLVPLLKD 105 (111)
Q Consensus 93 ~~~~g~L~~~l~~ 105 (111)
+ .+.+.+++.+
T Consensus 125 ~--~~~~~~~~~~ 135 (176)
T PF03691_consen 125 M--PEELEEVLED 135 (176)
T ss_pred H--HHHHHHHHHH
Confidence 7 3456665544
No 391
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=40.40 E-value=41 Score=18.62 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=13.8
Q ss_pred CCChhhH-HHHHHHhhCC
Q 037432 25 SGCCMCT-VAKRLLFSLG 41 (111)
Q Consensus 25 ~~Cp~C~-~~~~~l~~~~ 41 (111)
-.|.+|. +++..|.+.+
T Consensus 11 MtC~~C~~~V~~al~~v~ 28 (71)
T COG2608 11 MTCGHCVKTVEKALEEVD 28 (71)
T ss_pred cCcHHHHHHHHHHHhcCC
Confidence 4799996 7888998874
No 392
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=40.36 E-value=70 Score=21.38 Aligned_cols=61 Identities=21% Similarity=0.073 Sum_probs=29.7
Q ss_pred CChhhHHH---HHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHH
Q 037432 26 GCCMCTVA---KRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIET 89 (111)
Q Consensus 26 ~Cp~C~~~---~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~ 89 (111)
..|.+.++ ++.+.+.+........+-..........+.+.... ..-+.+.+=|...||+--
T Consensus 10 Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~~p~~a~~~l~~~i~~---~~~~~~~liGSSlGG~~A 73 (187)
T PF05728_consen 10 SSPQSFKAQALKQYFAEHGPDIQYPCPDLPPFPEEAIAQLEQLIEE---LKPENVVLIGSSLGGFYA 73 (187)
T ss_pred CCCCCHHHHHHHHHHHHhCCCceEECCCCCcCHHHHHHHHHHHHHh---CCCCCeEEEEEChHHHHH
Confidence 35555544 55666666665555544333333333333333332 122225566677777743
No 393
>PTZ00494 tuzin-like protein; Provisional
Probab=39.98 E-value=97 Score=24.62 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=33.8
Q ss_pred HHHhhcC-CcEEEEE-eCCChhhHHHHHHHhhCCCCcEEEEccCCcc
Q 037432 10 VTHLASS-NAVVLFS-ISGCCMCTVAKRLLFSLGVGPTIVELDHHVA 54 (111)
Q Consensus 10 ~~~~~~~-~~vvif~-~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~ 54 (111)
+.++... ++|++|+ ..+|.-|.-.+....+-+.+-..+||...++
T Consensus 387 L~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~ED 433 (664)
T PTZ00494 387 LTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTED 433 (664)
T ss_pred HhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcc
Confidence 3444333 3488777 5789999999999999999998999876555
No 394
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=39.98 E-value=1.1e+02 Score=22.79 Aligned_cols=44 Identities=9% Similarity=0.063 Sum_probs=27.8
Q ss_pred HHHHHhhcC---CcEEEEEeCCChhh----HHHHHHHhhCCCCcEEEEccC
Q 037432 8 EIVTHLASS---NAVVLFSISGCCMC----TVAKRLLFSLGVGPTIVELDH 51 (111)
Q Consensus 8 ~~~~~~~~~---~~vvif~~~~Cp~C----~~~~~~l~~~~v~~~~i~v~~ 51 (111)
+.+.+++++ ..|+.+....|-.- ..+++.|++.|+++-.+|++.
T Consensus 311 ~~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L~id~~~ 361 (380)
T TIGR02263 311 KYLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHGIPQIAFKYAE 361 (380)
T ss_pred HHHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCCCCEEEEEecC
Confidence 445555533 23666666666544 366777788888887777775
No 395
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=39.94 E-value=24 Score=21.51 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=13.3
Q ss_pred EEEEEeCCChhhHHHHHHHh
Q 037432 19 VVLFSISGCCMCTVAKRLLF 38 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~ 38 (111)
...--.+.||.|.+-+.-|.
T Consensus 26 ~k~H~~s~Cp~C~kkraeLa 45 (104)
T PF15379_consen 26 AKQHNSSQCPSCNKKRAELA 45 (104)
T ss_pred ccccCcccChHHHHHHHHHH
Confidence 44445688999987654443
No 396
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=39.78 E-value=32 Score=20.96 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=16.0
Q ss_pred CcccEEEECCEEEeccHHH
Q 037432 72 QTVPAIFVGGKFLGGIETL 90 (111)
Q Consensus 72 ~~vP~vfi~g~~igg~~~~ 90 (111)
...|.+|.||+.||--+..
T Consensus 80 ECTplvF~n~~LvgWG~~a 98 (102)
T PF11399_consen 80 ECTPLVFKNGKLVGWGDDA 98 (102)
T ss_pred ceEEEEEECCEEEEEcHHh
Confidence 6899999999999876643
No 397
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=39.50 E-value=28 Score=17.87 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=12.6
Q ss_pred CcccEEEECCEEEecc
Q 037432 72 QTVPAIFVGGKFLGGI 87 (111)
Q Consensus 72 ~~vP~vfi~g~~igg~ 87 (111)
..++.|||||+.+-.-
T Consensus 18 ~GI~~V~VNG~~vv~~ 33 (48)
T PF07908_consen 18 EGIDYVFVNGQIVVED 33 (48)
T ss_dssp BSEEEEEETTEEEECT
T ss_pred CCEEEEEECCEEEEEC
Confidence 5788999999987543
No 398
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=39.21 E-value=1.2e+02 Score=24.59 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=44.9
Q ss_pred cEEEEE-eCCChhhHHHHHHHhhCCCCcEEEEccC-CcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccH-HHHHHH
Q 037432 18 AVVLFS-ISGCCMCTVAKRLLFSLGVGPTIVELDH-HVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIE-TLMACH 94 (111)
Q Consensus 18 ~vvif~-~~~Cp~C~~~~~~l~~~~v~~~~i~v~~-~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~-~~~~~~ 94 (111)
.+++.+ .+....|.++...|++.|+..+.+|+.. .|-..+....+.+..+ ..|.+.+..+||+- .+.+..
T Consensus 546 dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~~~-------~vVt~Ee~~~GG~Gs~Va~~l 618 (641)
T PLN02234 546 RVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKSHE-------VLITVEEGSIGGFGSHVVQFL 618 (641)
T ss_pred CEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHhCC-------EEEEECCCCCCcHHHHHHHHH
Confidence 355544 3456678888899999999999999863 3444443333332222 13445555569995 444433
Q ss_pred -HcCChHHH
Q 037432 95 -INGTLVPL 102 (111)
Q Consensus 95 -~~g~L~~~ 102 (111)
++|.+...
T Consensus 619 ~e~~~~~~~ 627 (641)
T PLN02234 619 ALDGLLDGK 627 (641)
T ss_pred HHcCCCCCC
Confidence 34434433
No 399
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=39.15 E-value=9.7 Score=24.64 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=13.0
Q ss_pred EEEe-CCChhhHHHHHHHh
Q 037432 21 LFSI-SGCCMCTVAKRLLF 38 (111)
Q Consensus 21 if~~-~~Cp~C~~~~~~l~ 38 (111)
||+- -.||+|++..+.|.
T Consensus 5 IFGpei~CPhCRQ~ipALt 23 (163)
T TIGR02652 5 IFGPEIRCPHCRQNIPALT 23 (163)
T ss_pred ccCCcCcCchhhcccchhe
Confidence 4553 46999998887764
No 400
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=38.98 E-value=72 Score=20.18 Aligned_cols=47 Identities=13% Similarity=0.025 Sum_probs=28.0
Q ss_pred HHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE
Q 037432 32 VAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV 79 (111)
Q Consensus 32 ~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi 79 (111)
.+.++|++++++|+.++.+..+..... +++.+..|......+-++++
T Consensus 2 ~~~~~L~~~~i~~~~~~~~~~~~~~t~-~e~a~~~g~~~~~~~Ktlv~ 48 (152)
T TIGR00011 2 NAIRLLDKAKIEYEVHEYEVDPDHLDG-ESAAEKLGVDPHRVFKTLVA 48 (152)
T ss_pred HHHHHHHHcCCCcEEEEecCCCCcccH-HHHHHHhCCCHHHeEEEEEE
Confidence 478999999999999988765432111 13555556411133445554
No 401
>PRK02935 hypothetical protein; Provisional
Probab=38.87 E-value=15 Score=22.48 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=17.9
Q ss_pred hhcCCcEEEEEeCCChhhHHHHHHHhhCC
Q 037432 13 LASSNAVVLFSISGCCMCTVAKRLLFSLG 41 (111)
Q Consensus 13 ~~~~~~vvif~~~~Cp~C~~~~~~l~~~~ 41 (111)
+++.+.+.+ .||.|.+..+.|-+.+
T Consensus 63 mlStkavqV----~CP~C~K~TKmLGrvD 87 (110)
T PRK02935 63 MLSTKAVQV----ICPSCEKPTKMLGRVD 87 (110)
T ss_pred hhcccceee----ECCCCCchhhhcccee
Confidence 344444444 7999999999997764
No 402
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=38.68 E-value=9.6 Score=24.60 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=11.1
Q ss_pred CCChhhHHHHHHHh
Q 037432 25 SGCCMCTVAKRLLF 38 (111)
Q Consensus 25 ~~Cp~C~~~~~~l~ 38 (111)
-.||+|++..+.|.
T Consensus 7 i~CPhCRq~ipALt 20 (161)
T PF09654_consen 7 IQCPHCRQTIPALT 20 (161)
T ss_pred CcCchhhcccchhe
Confidence 36999998887764
No 403
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=38.46 E-value=95 Score=19.07 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=38.9
Q ss_pred CcEEEEEeCCChhhHHHHHHHhhCCCCc-EEEEccCCcchHHHHHHHHHH-hCCCCCCcccEEEECCEEEeccHHHHHHH
Q 037432 17 NAVVLFSISGCCMCTVAKRLLFSLGVGP-TIVELDHHVAGREIQAVLFQL-SSNGQHQTVPAIFVGGKFLGGIETLMACH 94 (111)
Q Consensus 17 ~~vvif~~~~Cp~C~~~~~~l~~~~v~~-~~i~v~~~~~~~~~~~~l~~~-~g~~~~~~vP~vfi~g~~igg~~~~~~~~ 94 (111)
.+|++.-+-.|++-.+++. .++.|... -.++.+..+... .+.-. .+.....++|.++|..+ ..+.+++..
T Consensus 35 g~I~Lv~RG~C~F~~K~~~-Aq~aGA~avII~n~~~~~~~~----~~~m~~~~~~~~i~IP~v~Is~~---dG~~L~~~l 106 (118)
T cd02127 35 GNIALIERGGCSFLTKAIN-AQKAGALAVIITDVNNDSDEY----YVEMIQDDSSRRADIPAAFLLGK---NGYMIRKTL 106 (118)
T ss_pred CeEEEEECCCCCHHHHHHH-HHHCCCcEEEEEECCCCcccc----ceEecCCCCCCCceEEEEEecHH---HHHHHHHHH
Confidence 4587778888999998877 45556544 444543322111 11100 01011258899998764 233444444
Q ss_pred HcC
Q 037432 95 ING 97 (111)
Q Consensus 95 ~~g 97 (111)
..|
T Consensus 107 ~~g 109 (118)
T cd02127 107 ERL 109 (118)
T ss_pred HcC
Confidence 443
No 404
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=37.42 E-value=95 Score=18.75 Aligned_cols=56 Identities=7% Similarity=-0.046 Sum_probs=36.8
Q ss_pred hhhHHHHHHHhhCCCCcEEE--Ecc---------------CCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEec
Q 037432 28 CMCTVAKRLLFSLGVGPTIV--ELD---------------HHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGG 86 (111)
Q Consensus 28 p~C~~~~~~l~~~~v~~~~i--~v~---------------~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg 86 (111)
-...++++++++.|++++.. .+. -.|.-+...+.+++.+.. ..+|...|+....|-
T Consensus 16 lla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~---~~ipv~~I~~~~Y~~ 88 (104)
T PRK09590 16 MMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAK---VGKPVVQIPPQAYIP 88 (104)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhh---cCCCEEEeCHHHcCC
Confidence 45567788888888876432 221 012334455667777776 789999999988773
No 405
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=37.29 E-value=30 Score=18.83 Aligned_cols=12 Identities=33% Similarity=0.952 Sum_probs=10.2
Q ss_pred EEEECCEEEecc
Q 037432 76 AIFVGGKFLGGI 87 (111)
Q Consensus 76 ~vfi~g~~igg~ 87 (111)
.|++||+++|-.
T Consensus 14 ~V~vdg~~~G~t 25 (71)
T PF08308_consen 14 EVYVDGKYIGTT 25 (71)
T ss_pred EEEECCEEeccC
Confidence 589999999954
No 406
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=37.14 E-value=31 Score=21.00 Aligned_cols=16 Identities=25% Similarity=0.798 Sum_probs=13.3
Q ss_pred CcccEEEECCEEEecc
Q 037432 72 QTVPAIFVGGKFLGGI 87 (111)
Q Consensus 72 ~~vP~vfi~g~~igg~ 87 (111)
..-|.|+|||+.+|..
T Consensus 40 ~~~~~v~vdg~~ig~l 55 (117)
T PF11008_consen 40 AVKPDVYVDGELIGEL 55 (117)
T ss_pred cccceEEECCEEEEEe
Confidence 4668899999999864
No 407
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=36.83 E-value=99 Score=18.81 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=32.5
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHH
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGRE 57 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~ 57 (111)
+|.+++.++|.-..-++.+.+..+.++..+.+..+.+..+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~d 40 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEED 40 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecccccccc
Confidence 4788999999999999999999988888888877666544
No 408
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=36.74 E-value=24 Score=19.56 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=17.1
Q ss_pred CcccEEEECCEEEeccHHHHHHH-HcCChHHHHHh
Q 037432 72 QTVPAIFVGGKFLGGIETLMACH-INGTLVPLLKD 105 (111)
Q Consensus 72 ~~vP~vfi~g~~igg~~~~~~~~-~~g~L~~~l~~ 105 (111)
...|.| |||.|-+..-. ++-+|+++|+.
T Consensus 16 ~~lP~I------IGGSDLi~h~~~knseleeWl~~ 44 (65)
T PF08599_consen 16 GGLPHI------IGGSDLIAHHAGKNSELEEWLRQ 44 (65)
T ss_pred CCCCee------ecchhhhhccccccccHHHHHHH
Confidence 556654 67766544432 45588888865
No 409
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=36.52 E-value=1.7e+02 Score=21.54 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=30.9
Q ss_pred CcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHH
Q 037432 17 NAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVL 62 (111)
Q Consensus 17 ~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l 62 (111)
.++.+.+.+....-.++...|++.++.+..+++..+|....+.+.+
T Consensus 23 ~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~ 68 (374)
T cd08183 23 RRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAV 68 (374)
T ss_pred CcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHH
Confidence 5666666554446667888899999998887776666655444443
No 410
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=36.51 E-value=1e+02 Score=18.80 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=14.1
Q ss_pred HHHHhCCCCCCcccEEEECCE
Q 037432 62 LFQLSSNGQHQTVPAIFVGGK 82 (111)
Q Consensus 62 l~~~~g~~~~~~vP~vfi~g~ 82 (111)
+-+.++. ..||++++...
T Consensus 63 ~F~~y~I---~~VPa~V~~~~ 80 (113)
T PF09673_consen 63 LFRQYNI---TAVPAFVVVKD 80 (113)
T ss_pred HHhhCCc---eEcCEEEEEcC
Confidence 7778898 99999865443
No 411
>PRK04195 replication factor C large subunit; Provisional
Probab=36.47 E-value=2e+02 Score=22.13 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=29.3
Q ss_pred CCcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccC
Q 037432 16 SNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDH 51 (111)
Q Consensus 16 ~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~ 51 (111)
.+.+.+|+.++|.--..++.+.++++..+.+++...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 345888999999999999999999987776666543
No 412
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=36.44 E-value=34 Score=20.77 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=12.8
Q ss_pred CcccEEEECCEEEeccH
Q 037432 72 QTVPAIFVGGKFLGGIE 88 (111)
Q Consensus 72 ~~vP~vfi~g~~igg~~ 88 (111)
...=++||||.++|.+-
T Consensus 62 ~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 62 AFRASVWVNGWFLGSYW 78 (111)
T ss_dssp TEEEEEEETTEEEEEEE
T ss_pred ceEEEEEECCEEeeeec
Confidence 33447899999999763
No 413
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=36.27 E-value=77 Score=19.00 Aligned_cols=53 Identities=9% Similarity=-0.113 Sum_probs=33.4
Q ss_pred hHHHHHHHhhCCCCcEEEEcc---------------CCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEe
Q 037432 30 CTVAKRLLFSLGVGPTIVELD---------------HHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLG 85 (111)
Q Consensus 30 C~~~~~~l~~~~v~~~~i~v~---------------~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~ig 85 (111)
..++++.+++.|++++..-.. -.|.-+...+.+++..+. ..+|...|+....|
T Consensus 17 a~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~---~~ipv~~I~~~~Yg 84 (99)
T cd05565 17 ANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDR---LGIKLVTTTGKQYI 84 (99)
T ss_pred HHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhh---cCCCEEEeCHHHHh
Confidence 346667777776665322110 124445556678887776 78999999977666
No 414
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=36.23 E-value=1.2e+02 Score=20.67 Aligned_cols=48 Identities=17% Similarity=0.319 Sum_probs=26.5
Q ss_pred HHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEecc
Q 037432 31 TVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGI 87 (111)
Q Consensus 31 ~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~ 87 (111)
+.|..++.+.. .=...=|...+......+..++.+|. .+++++|+||.
T Consensus 50 ~~A~~~i~~i~-~~~ILfVgtk~~~~~~V~~~A~~~g~--------~~v~~RWlgGt 97 (196)
T TIGR01012 50 RVAAKFLVRIE-PEDILVVSARIYGQKPVLKFAKVTGA--------RAIAGRFTPGT 97 (196)
T ss_pred HHHHHHHHHhh-CCeEEEEecCHHHHHHHHHHHHHhCC--------ceECCeeCCCC
Confidence 34455555443 22333444445555555566666664 45777777775
No 415
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=36.14 E-value=7.4 Score=22.66 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=29.4
Q ss_pred EEEeCCChhhHHHHHHHhhC-----CCCc--EEEEccCCcchHHHHHHHHHHhCCCCCCcccEE
Q 037432 21 LFSISGCCMCTVAKRLLFSL-----GVGP--TIVELDHHVAGREIQAVLFQLSSNGQHQTVPAI 77 (111)
Q Consensus 21 if~~~~Cp~C~~~~~~l~~~-----~v~~--~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~v 77 (111)
+|....-|...++...++.. +.+| +.+||.++|+ +++..+. -..|++
T Consensus 2 LyV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~-------lAe~~~i---vAtPtL 55 (82)
T PF07689_consen 2 LYVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPE-------LAEEDRI---VATPTL 55 (82)
T ss_dssp EEESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHS-------HHTTTEE---ECHHHH
T ss_pred eEECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHh-------HHhHCCe---eecceE
Confidence 46666667777776666543 4444 7889988887 5555554 444543
No 416
>PHA03005 sulfhydryl oxidase; Provisional
Probab=36.03 E-value=33 Score=20.58 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=13.7
Q ss_pred eCCChhhH-HHHHHHhhCCC
Q 037432 24 ISGCCMCT-VAKRLLFSLGV 42 (111)
Q Consensus 24 ~~~Cp~C~-~~~~~l~~~~v 42 (111)
.-=||.|+ .|++.+++.+|
T Consensus 40 tLPC~~Cr~HA~~ai~knni 59 (96)
T PHA03005 40 TLPCPACRRHAKEAIEKNNI 59 (96)
T ss_pred cCCCHHHHHHHHHHHhhcCc
Confidence 34599997 78888877644
No 417
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=35.89 E-value=65 Score=18.19 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=14.0
Q ss_pred CcccEEEECCEEEeccH
Q 037432 72 QTVPAIFVGGKFLGGIE 88 (111)
Q Consensus 72 ~~vP~vfi~g~~igg~~ 88 (111)
..-|.+.|||+++++..
T Consensus 53 ~~gP~~~v~~~~~~~~~ 69 (80)
T cd03081 53 ACSPAAMIDGEVHGRVD 69 (80)
T ss_pred CCCCEEEECCEEECCCC
Confidence 46799999999988773
No 418
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=35.41 E-value=1e+02 Score=18.64 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=25.6
Q ss_pred HHHHHhhcCCcEEEEEeCCChhhH----HHHHHHhhCCCCcEEEEcc
Q 037432 8 EIVTHLASSNAVVLFSISGCCMCT----VAKRLLFSLGVGPTIVELD 50 (111)
Q Consensus 8 ~~~~~~~~~~~vvif~~~~Cp~C~----~~~~~l~~~~v~~~~i~v~ 50 (111)
+.+.++....+|++.. ..++++. .+..+|+....+...+++.
T Consensus 78 ~~l~~l~~~~~I~iW~-~~~~~dq~gl~~~l~~L~~~~~~I~~v~~t 123 (124)
T PF08874_consen 78 KRLEELPEDDPIVIWY-GDNAYDQLGLRYLLSLLKDKPNRIYVVNVT 123 (124)
T ss_pred HHHHhCCCCCEEEEEe-CCCHHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 3344554555565554 5567764 6667777777777777764
No 419
>PRK04016 DNA-directed RNA polymerase subunit N; Provisional
Probab=35.37 E-value=48 Score=18.31 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=25.0
Q ss_pred ccEE-EECCEEEecc-HHHHHHHHc-CChHHHHHhcCccc
Q 037432 74 VPAI-FVGGKFLGGI-ETLMACHIN-GTLVPLLKDAGALW 110 (111)
Q Consensus 74 vP~v-fi~g~~igg~-~~~~~~~~~-g~L~~~l~~~g~~~ 110 (111)
+|.- |-.|+.+|.. ++.....++ -...+.|.+.|+-|
T Consensus 3 iPvRCFTCGkvi~~~we~y~~~~~~g~~~~~vLd~Lg~~R 42 (62)
T PRK04016 3 IPVRCFTCGKVIAEKWEEFKERVEAGEDPGKVLDDLGVKR 42 (62)
T ss_pred CCeEecCCCCChHHHHHHHHHHHHcCCCHHHHHHHcCCcc
Confidence 4544 7788888874 556666655 46778888888754
No 420
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=35.26 E-value=1e+02 Score=22.10 Aligned_cols=42 Identities=14% Similarity=0.032 Sum_probs=31.3
Q ss_pred hhHHHHHHHhhcCCcEEEEEeCCC-hhhHHHHHHHhhCCCCcE
Q 037432 4 EKTYEIVTHLASSNAVVLFSISGC-CMCTVAKRLLFSLGVGPT 45 (111)
Q Consensus 4 ~~~~~~~~~~~~~~~vvif~~~~C-p~C~~~~~~l~~~~v~~~ 45 (111)
..+.+.+++++...+|..+..+.| +.|..+.+++++.++++-
T Consensus 56 ~~a~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i 98 (347)
T cd06340 56 DIGATEAERLITEEGVVALVGAYQSAVTLAASQVAERYGVPFV 98 (347)
T ss_pred HHHHHHHHHHhccCCceEEecccchHhHHHHHHHHHHhCCCEE
Confidence 346677888888877776666665 567888899998888763
No 421
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=35.14 E-value=97 Score=18.17 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=34.4
Q ss_pred hhHHHHHHHhhCCCCcEEEEcc---------------CCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEecc
Q 037432 29 MCTVAKRLLFSLGVGPTIVELD---------------HHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGI 87 (111)
Q Consensus 29 ~C~~~~~~l~~~~v~~~~i~v~---------------~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~ 87 (111)
...++++.+++.|++++..-.+ -.|.-+...+.+++.... ..+|...++....|-.
T Consensus 15 ~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~---~~~pv~~I~~~~Y~~~ 85 (96)
T cd05564 15 LVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAE---YGIPVAVIDMMDYGMM 85 (96)
T ss_pred HHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhcc---CCCcEEEcChHhcccC
Confidence 4556777777777665332111 123334445567666665 7899999999877654
No 422
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=34.77 E-value=1.3e+02 Score=19.57 Aligned_cols=60 Identities=15% Similarity=0.157 Sum_probs=33.4
Q ss_pred cEEEEEeCC------ChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCC--------CCcccEEEECCE
Q 037432 18 AVVLFSISG------CCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQ--------HQTVPAIFVGGK 82 (111)
Q Consensus 18 ~vvif~~~~------Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~--------~~~vP~vfi~g~ 82 (111)
+++++.+++ ++.-.++.+.+++.|+....+-+.. .+.. .|.++++.+. ..-.|++|++++
T Consensus 111 ~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~-~~~~----~L~~IA~~~~~~~~~~~~~~l~~~~~~~~~ 184 (186)
T cd01480 111 KFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS-QNEE----PLSRIACDGKSALYRENFAELLWSFFIDDE 184 (186)
T ss_pred eEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc-cchH----HHHHHHcCCcchhhhcchhhhccccccccc
Confidence 466655555 3333455566778888887777765 2222 3555554310 123466676654
No 423
>KOG4700 consensus Uncharacterized homolog of ribosome-binding factor A [General function prediction only]
Probab=34.67 E-value=37 Score=23.03 Aligned_cols=32 Identities=34% Similarity=0.341 Sum_probs=19.3
Q ss_pred HHHHHHHHhCCCCCCcccEE-EECCEEEeccHHHHH
Q 037432 58 IQAVLFQLSSNGQHQTVPAI-FVGGKFLGGIETLMA 92 (111)
Q Consensus 58 ~~~~l~~~~g~~~~~~vP~v-fi~g~~igg~~~~~~ 92 (111)
++..|.+..+. .+||-| ||+++---+..++-+
T Consensus 101 ~rh~l~~~~~~---g~vP~IkFV~DK~~~~l~e~d~ 133 (207)
T KOG4700|consen 101 IRHRLEESIGI---GTVPEIKFVGDKALLMLQEMDK 133 (207)
T ss_pred HHHHHHHHhcc---ccCCceEEecchHHHHHHHHHH
Confidence 44455555566 677665 999985555444433
No 424
>PLN02790 transketolase
Probab=33.92 E-value=1.5e+02 Score=23.99 Aligned_cols=89 Identities=13% Similarity=0.038 Sum_probs=49.9
Q ss_pred CcEEEEE-eCCChhhHHHHHHHhhCCCCcEEEEccCC-cchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHH---
Q 037432 17 NAVVLFS-ISGCCMCTVAKRLLFSLGVGPTIVELDHH-VAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLM--- 91 (111)
Q Consensus 17 ~~vvif~-~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~-~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~--- 91 (111)
..+++.+ .+-...|.++...|++.|+....+++-.. +-..+...+..+..+. ..-+.|.+.....+|+....
T Consensus 541 ~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~---~~~~vvtiE~~~~~G~~~~~~~~ 617 (654)
T PLN02790 541 PDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPS---SVTARVSVEAGSTFGWEKYVGSK 617 (654)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhcc---ccceEEEecCccchhHHHhcCCC
Confidence 3455544 45677888999999999999999987543 2222211223334433 33344555444445543321
Q ss_pred -------HHHHcCChHHHHHhcCc
Q 037432 92 -------ACHINGTLVPLLKDAGA 108 (111)
Q Consensus 92 -------~~~~~g~L~~~l~~~g~ 108 (111)
.+-..|...++++..|+
T Consensus 618 ~~~igvd~Fg~sg~~~~l~~~~Gl 641 (654)
T PLN02790 618 GKVIGVDRFGASAPAGILYKEFGF 641 (654)
T ss_pred ceEEEeCCCcCcCCHHHHHHHhCC
Confidence 23346666776666653
No 425
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=33.88 E-value=1.3e+02 Score=23.04 Aligned_cols=80 Identities=20% Similarity=0.148 Sum_probs=42.5
Q ss_pred hHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCC------CCcccEEEECCE-----------------EEec
Q 037432 30 CTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQ------HQTVPAIFVGGK-----------------FLGG 86 (111)
Q Consensus 30 C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~------~~~vP~vfi~g~-----------------~igg 86 (111)
++++..+=+.++.....+-..+.....+.++.+++..|... -..+|.+..+|. +-|-
T Consensus 92 ~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~Gh 171 (420)
T PF01704_consen 92 VEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGH 171 (420)
T ss_dssp HHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TG
T ss_pred HHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCCCcceEEEeecCcceEeCCCccccccccccccchhhccCCCC
Confidence 34555544566766655555555556666667777444210 046777766662 1133
Q ss_pred cHHHHHHHHcCChHHHHHhcCccc
Q 037432 87 IETLMACHINGTLVPLLKDAGALW 110 (111)
Q Consensus 87 ~~~~~~~~~~g~L~~~l~~~g~~~ 110 (111)
-+-...+..+|.|+++++ .|.-|
T Consensus 172 Gdi~~aL~~sG~Ld~l~~-~G~ey 194 (420)
T PF01704_consen 172 GDIYRALYNSGLLDKLLA-RGIEY 194 (420)
T ss_dssp GGHHHHHHHTTHHHHHHH-TT--E
T ss_pred cceehhhhccChHHHHHH-cCCeE
Confidence 344556677888877654 36544
No 426
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=33.59 E-value=1.6e+02 Score=20.79 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=33.2
Q ss_pred hHHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEcc
Q 037432 5 KTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELD 50 (111)
Q Consensus 5 ~~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~ 50 (111)
++..+.+++....++++-+..+ ||.++.-+++..|++..-+...
T Consensus 127 en~~~a~~i~~~~~~iIVTq~f--Hm~RA~~ia~~~Gi~~~~~~a~ 170 (239)
T PRK10834 127 DSIVRTRKVFDTNDFIIITQRF--HCERALFIALHMGIQAQCYAVP 170 (239)
T ss_pred HHHHHHHHHhCCCCEEEECCHH--HHHHHHHHHHHcCCceEEEeCC
Confidence 3444556667777788888777 9999999999999987666543
No 427
>PHA02558 uvsW UvsW helicase; Provisional
Probab=33.47 E-value=2.1e+02 Score=22.12 Aligned_cols=39 Identities=8% Similarity=-0.158 Sum_probs=25.7
Q ss_pred CcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchH
Q 037432 17 NAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGR 56 (111)
Q Consensus 17 ~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~ 56 (111)
.++.+|+.... +|..+...|.+.+++...+.=+...+.+
T Consensus 345 ~~~lV~~~~~~-h~~~L~~~L~~~g~~v~~i~G~~~~~eR 383 (501)
T PHA02558 345 ENTFVMFKYVE-HGKPLYEMLKKVYDKVYYVSGEVDTEDR 383 (501)
T ss_pred CCEEEEEEEHH-HHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 34555554433 8999999999988877666555444433
No 428
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=33.44 E-value=1.3e+02 Score=19.07 Aligned_cols=63 Identities=21% Similarity=0.192 Sum_probs=31.5
Q ss_pred HHHhhcCC-c--EEEEEeCCChhhHHHHHHHhhC----CCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE
Q 037432 10 VTHLASSN-A--VVLFSISGCCMCTVAKRLLFSL----GVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF 78 (111)
Q Consensus 10 ~~~~~~~~-~--vvif~~~~Cp~C~~~~~~l~~~----~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf 78 (111)
+..+.... + +.+|...........++.|.+. .-++..+-+|.....+ +....|. ....+|++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~-----~~~~~~i-~~~~~P~~v 156 (184)
T PF13848_consen 87 FEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPR-----LLKYFGI-DEDDLPALV 156 (184)
T ss_dssp HHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHH-----HHHHTTT-TTSSSSEEE
T ss_pred HHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHH-----HHHHcCC-CCccCCEEE
Confidence 34444443 4 3344445566666666655543 3333444444333222 4446665 114899986
No 429
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=33.14 E-value=39 Score=25.23 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=12.4
Q ss_pred HHHhhcCCcEEEEEeCCChhhH
Q 037432 10 VTHLASSNAVVLFSISGCCMCT 31 (111)
Q Consensus 10 ~~~~~~~~~vvif~~~~Cp~C~ 31 (111)
+++++. ..|.+.+.|+||-|.
T Consensus 41 lr~lLp-~~I~lisGPGCPVCV 61 (355)
T PF01924_consen 41 LRSLLP-ENIELISGPGCPVCV 61 (355)
T ss_dssp HHHHS--TTEEEEE-S--TTTT
T ss_pred HHhhCC-CCcEEecCCCCccEE
Confidence 344443 459999999999996
No 430
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=33.04 E-value=1.2e+02 Score=18.48 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=20.3
Q ss_pred CCcEEEEEeCCChhhHHHHHHHhhCCCCc
Q 037432 16 SNAVVLFSISGCCMCTVAKRLLFSLGVGP 44 (111)
Q Consensus 16 ~~~vvif~~~~Cp~C~~~~~~l~~~~v~~ 44 (111)
..+|++..+..|++..+++. ..+.|...
T Consensus 43 ~GkIvLv~rg~c~f~~K~~~-A~~aGA~a 70 (122)
T cd04816 43 KGAIVLVDRGGCPFADKQKV-AAARGAVA 70 (122)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCcE
Confidence 45688888899999888775 44555544
No 431
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=32.64 E-value=1.1e+02 Score=18.01 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=35.5
Q ss_pred hhHHHHHHHhhCCCCcEEEEcc---------------CCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccH
Q 037432 29 MCTVAKRLLFSLGVGPTIVELD---------------HHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIE 88 (111)
Q Consensus 29 ~C~~~~~~l~~~~v~~~~i~v~---------------~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~ 88 (111)
...++++++++.|++++..-.. -.|.-+...+.+++.... ..+|...|+....|-.+
T Consensus 19 l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~---~~ipv~~I~~~~Y~~md 90 (95)
T TIGR00853 19 LVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDK---KGIPVEVINGAQYGKLT 90 (95)
T ss_pred HHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhh---cCCCEEEeChhhcccCC
Confidence 4567788888888776432211 113334455667776665 67899999887666543
No 432
>PF12156 ATPase-cat_bd: Putative metal-binding domain of cation transport ATPase; InterPro: IPR021993 This domain is found in bacteria, and is approximately 90 amino acids in length. It is found associated with PF00403 from PFAM, PF00122 from PFAM, PF00702 from PFAM. The cysteine-rich nature and composition suggest this might be a cation-binding domain; most members are annotated as being cation transport ATPases.
Probab=32.58 E-value=37 Score=19.82 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=16.3
Q ss_pred CChhhHHHHHHHhhCCCC
Q 037432 26 GCCMCTVAKRLLFSLGVG 43 (111)
Q Consensus 26 ~Cp~C~~~~~~l~~~~v~ 43 (111)
.|+-|..|-.+|.+.|+.
T Consensus 28 CC~GC~~V~~~i~~~gL~ 45 (88)
T PF12156_consen 28 CCPGCQAVYQLIHENGLE 45 (88)
T ss_pred ccHHHHHHHHHHHHcchH
Confidence 499999999999999875
No 433
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.55 E-value=22 Score=20.51 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=11.9
Q ss_pred CChhhH-HHHHHHhhCCCCc
Q 037432 26 GCCMCT-VAKRLLFSLGVGP 44 (111)
Q Consensus 26 ~Cp~C~-~~~~~l~~~~v~~ 44 (111)
.||-|- +++++|...||.|
T Consensus 35 ~ce~c~a~~kk~l~~vgi~f 54 (82)
T COG2331 35 TCEECGARLKKLLNAVGIVF 54 (82)
T ss_pred cChhhChHHHHhhccceEEE
Confidence 466663 6666666666655
No 434
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=32.05 E-value=2.3e+02 Score=21.62 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=22.9
Q ss_pred cEEEEEeCCChhhH----HHHHHHhhCCCCcEEEEccCCc
Q 037432 18 AVVLFSISGCCMCT----VAKRLLFSLGVGPTIVELDHHV 53 (111)
Q Consensus 18 ~vvif~~~~Cp~C~----~~~~~l~~~~v~~~~i~v~~~~ 53 (111)
.|+.++..+|..-. .+++.+++.||++-.+|.|..+
T Consensus 364 GVI~~~~~~C~~~s~e~~~ik~~l~~~GIP~L~ietD~~d 403 (430)
T TIGR03191 364 GCMLHLNRGCEGLSIGIMENRLAIAKAGIPIMTFEGNMGD 403 (430)
T ss_pred EEEEcCCCCCccchHhHHHHHHHHHHcCCCEEEEECCCCC
Confidence 36666666665442 4566677777777777776543
No 435
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=32.02 E-value=1.4e+02 Score=18.94 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=12.7
Q ss_pred HHHHhCCCCCCcccEEEE
Q 037432 62 LFQLSSNGQHQTVPAIFV 79 (111)
Q Consensus 62 l~~~~g~~~~~~vP~vfi 79 (111)
+-+.++. ..||++++
T Consensus 63 lF~~f~I---~~VPa~V~ 77 (130)
T TIGR02742 63 WFKQFDI---TAVPAFVV 77 (130)
T ss_pred HHhhcCc---eEcCEEEE
Confidence 7778898 99999865
No 436
>KOG3460 consensus Small nuclear ribonucleoprotein (snRNP) LSM3 [RNA processing and modification]
Probab=31.80 E-value=78 Score=18.54 Aligned_cols=12 Identities=42% Similarity=0.564 Sum_probs=10.5
Q ss_pred CcccEEEECCEE
Q 037432 72 QTVPAIFVGGKF 83 (111)
Q Consensus 72 ~~vP~vfi~g~~ 83 (111)
+++|.+|+.|.-
T Consensus 69 r~~emlFvRGd~ 80 (91)
T KOG3460|consen 69 RTVEMLFVRGDG 80 (91)
T ss_pred cceeEEEEeCCe
Confidence 899999999864
No 437
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=31.69 E-value=51 Score=23.52 Aligned_cols=22 Identities=18% Similarity=0.027 Sum_probs=18.4
Q ss_pred EEeCCChhhHHHHHHHhh-CCCC
Q 037432 22 FSISGCCMCTVAKRLLFS-LGVG 43 (111)
Q Consensus 22 f~~~~Cp~C~~~~~~l~~-~~v~ 43 (111)
+-+..||.++.+++.|++ +|++
T Consensus 170 ~~t~~~pla~~~R~~lr~~~~~~ 192 (268)
T PRK15116 170 AKTIQDPLAAKLRERLKSDFGVV 192 (268)
T ss_pred ecccCChHHHHHHHHHHHhhCCC
Confidence 445689999999999998 7875
No 438
>COG1631 RPL42A Ribosomal protein L44E [Translation, ribosomal structure and biogenesis]
Probab=31.63 E-value=14 Score=22.08 Aligned_cols=9 Identities=22% Similarity=0.489 Sum_probs=6.9
Q ss_pred eCCChhhHH
Q 037432 24 ISGCCMCTV 32 (111)
Q Consensus 24 ~~~Cp~C~~ 32 (111)
.+.||+|.+
T Consensus 8 ~tyCp~Ckk 16 (94)
T COG1631 8 RTYCPYCKK 16 (94)
T ss_pred eecCccccc
Confidence 468999974
No 439
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=31.56 E-value=1.6e+02 Score=19.65 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=39.8
Q ss_pred CCcEEEEEeC---CChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHH
Q 037432 16 SNAVVLFSIS---GCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMA 92 (111)
Q Consensus 16 ~~~vvif~~~---~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~ 92 (111)
..+|.+.... .+.++....+.++++|.....+.+.......++.+.+. ..-.||+.| |....+.+
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~---------~ad~I~~~G---G~~~~~~~ 96 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLL---------EADGIFVGG---GNQLRLLS 96 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHh---------hCCEEEEcC---CcHHHHHH
Confidence 3445554332 36788999999999999877666543333333322332 233577776 44445555
Q ss_pred HHHcC
Q 037432 93 CHING 97 (111)
Q Consensus 93 ~~~~g 97 (111)
..++-
T Consensus 97 ~l~~t 101 (210)
T cd03129 97 VLRET 101 (210)
T ss_pred HHHhC
Confidence 44433
No 440
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=31.54 E-value=1.9e+02 Score=22.15 Aligned_cols=32 Identities=9% Similarity=0.217 Sum_probs=28.1
Q ss_pred EEEEEeCCChhhHHHHHHHhhCCCCcEEEEcc
Q 037432 19 VVLFSISGCCMCTVAKRLLFSLGVGPTIVELD 50 (111)
Q Consensus 19 vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~ 50 (111)
+-+|+-|+|.-...++.+..+.|+++..++..
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~~i~vsa~ 182 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIEPIVMSAG 182 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHH
Confidence 56788999999999999999999998777654
No 441
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.50 E-value=2e+02 Score=20.77 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=36.2
Q ss_pred cEEEEEeCCChh----hHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCC
Q 037432 18 AVVLFSISGCCM----CTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSN 68 (111)
Q Consensus 18 ~vvif~~~~Cp~----C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~ 68 (111)
.+.+..-..-|. -+.-.+..++.|+.++.+++..+....++.+.+.+...-
T Consensus 34 ~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (286)
T PRK14175 34 KLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNND 88 (286)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 455544444444 456667778899999999999887777777777777654
No 442
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=31.45 E-value=1.4e+02 Score=23.05 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=21.9
Q ss_pred HHHHHhhcCCc-EEEEEeCCChhhHHHH----HHHhhCCCCcEE
Q 037432 8 EIVTHLASSNA-VVLFSISGCCMCTVAK----RLLFSLGVGPTI 46 (111)
Q Consensus 8 ~~~~~~~~~~~-vvif~~~~Cp~C~~~~----~~l~~~~v~~~~ 46 (111)
+..+++.+..- .+|. .|+|+-|++-- +-+++.||+...
T Consensus 327 eIa~~Lk~dgVDAvIL-tstCgtCtrcga~m~keiE~~GIPvV~ 369 (431)
T TIGR01917 327 EFSKELLAAGVDAVIL-TSTUGTCTRCGATMVKEIERAGIPVVH 369 (431)
T ss_pred HHHHHHHHcCCCEEEE-cCCCCcchhHHHHHHHHHHHcCCCEEE
Confidence 33444443333 4444 48899998544 455667887643
No 443
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=31.41 E-value=32 Score=18.05 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=10.1
Q ss_pred CCChhhHHHHHHH
Q 037432 25 SGCCMCTVAKRLL 37 (111)
Q Consensus 25 ~~Cp~C~~~~~~l 37 (111)
..||.|+.+++--
T Consensus 34 ~RC~~CR~~rk~~ 46 (49)
T PF13451_consen 34 KRCPSCRQARKQR 46 (49)
T ss_pred ccCHHHHHHHHHh
Confidence 3599999988654
No 444
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=31.35 E-value=2.4e+02 Score=21.84 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=40.2
Q ss_pred cEEEEE-eCCChhhHHHHHHHhhCCCCcEEEEccC-CcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHH
Q 037432 18 AVVLFS-ISGCCMCTVAKRLLFSLGVGPTIVELDH-HVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLM 91 (111)
Q Consensus 18 ~vvif~-~~~Cp~C~~~~~~l~~~~v~~~~i~v~~-~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~ 91 (111)
.+++++ ...+..|.++...|.+.|+..+.+|+.. .|-..+........++ .+ .++-+|...||+-..+
T Consensus 342 DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~-----~v-vtvEE~~~~gGlG~~v 411 (464)
T PRK11892 342 DVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTN-----RL-VTVEEGWPQSGVGAEI 411 (464)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcC-----eE-EEEeCCCcCCcHHHHH
Confidence 345444 3457788899999999999999999864 2333332222222333 22 3445566677875433
No 445
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=31.28 E-value=1.2e+02 Score=19.16 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=27.4
Q ss_pred HHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEE
Q 037432 32 VAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIF 78 (111)
Q Consensus 32 ~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vf 78 (111)
.+..+|++++++|+.++.+..+..... +++.+..|......+-.++
T Consensus 3 ~~~~~L~~~~i~~~~~~h~~~~~~~t~-~e~~~~~~~~~~~~~K~li 48 (152)
T cd00002 3 PAIRLLDKAKIPYELHEYEHDEDASDG-LEAAEKLGLDPEQVFKTLV 48 (152)
T ss_pred HHHHHHHHcCCCeEEEeecCCCCcCCH-HHHHHHhCCCHHHeEEEEE
Confidence 578899999999999998765531111 1344445541112445555
No 446
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=31.21 E-value=94 Score=21.93 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCcEEEEEeCCChhhHHH-HHHHhhCCCCcEEEEccCC
Q 037432 6 TYEIVTHLASSNAVVLFSISGCCMCTVA-KRLLFSLGVGPTIVELDHH 52 (111)
Q Consensus 6 ~~~~~~~~~~~~~vvif~~~~Cp~C~~~-~~~l~~~~v~~~~i~v~~~ 52 (111)
+.+.+-..+....+++|---++|-|++| ..++++.|+.....+||..
T Consensus 194 aLe~lyprl~~GGiIi~DDY~~~gcr~AvdeF~~~~gi~~~l~~id~~ 241 (248)
T PF05711_consen 194 ALEFLYPRLSPGGIIIFDDYGHPGCRKAVDEFRAEHGITDPLHPIDWT 241 (248)
T ss_dssp HHHHHGGGEEEEEEEEESSTTTHHHHHHHHHHHHHTT--S--EE-SSS
T ss_pred HHHHHHhhcCCCeEEEEeCCCChHHHHHHHHHHHHcCCCCccEEecCc
Confidence 3444445566777888776666999754 4677788998877777754
No 447
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=30.94 E-value=1.5e+02 Score=22.83 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=21.8
Q ss_pred HHHHHhhcCCc-EEEEEeCCChhhHHHH----HHHhhCCCCcE
Q 037432 8 EIVTHLASSNA-VVLFSISGCCMCTVAK----RLLFSLGVGPT 45 (111)
Q Consensus 8 ~~~~~~~~~~~-vvif~~~~Cp~C~~~~----~~l~~~~v~~~ 45 (111)
+..+++....- .+|. .++|+-|++-- +-+++.||+..
T Consensus 327 eIa~~Lk~dgVDAVIL-TstCgtC~r~~a~m~keiE~~GiPvv 368 (431)
T TIGR01918 327 EFVVELKQGGVDAVIL-TSTUGTCTRCGATMVKEIERAGIPVV 368 (431)
T ss_pred HHHHHHHHcCCCEEEE-cCCCCcchhHHHHHHHHHHHcCCCEE
Confidence 33444444433 4444 48899998544 45566788764
No 448
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=30.61 E-value=1.1e+02 Score=17.21 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=20.9
Q ss_pred HHHhhcCCcEEEEEeCCChhhHHHHHHHhhCCCC
Q 037432 10 VTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVG 43 (111)
Q Consensus 10 ~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~v~ 43 (111)
+..+-+..+|++|.. .+..+..+...|.+.|.+
T Consensus 50 ~~~~~~~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 50 LGDLDRDRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred HhhcCCCCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 333435556777765 566666777777777764
No 449
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=30.60 E-value=57 Score=24.72 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhCCCCCCcccEEEECCE
Q 037432 56 REIQAVLFQLSSNGQHQTVPAIFVGGK 82 (111)
Q Consensus 56 ~~~~~~l~~~~g~~~~~~vP~vfi~g~ 82 (111)
+++....+-.+|. ....||+|||+|.
T Consensus 59 ~~m~~F~~YYsge-~~APVlTIFIGGN 84 (456)
T KOG2863|consen 59 RRMGDFYKYYSGE-IKAPVLTIFIGGN 84 (456)
T ss_pred HHHHHHHHHhCCc-ccCceeEEEecCc
Confidence 3333334444453 2357788888775
No 450
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=30.43 E-value=69 Score=19.43 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=28.0
Q ss_pred CCcEEEEE-eCCChhhHHHHHHHhhCCCCcEEEEcc
Q 037432 16 SNAVVLFS-ISGCCMCTVAKRLLFSLGVGPTIVELD 50 (111)
Q Consensus 16 ~~~vvif~-~~~Cp~C~~~~~~l~~~~v~~~~i~v~ 50 (111)
...+++++ .+....|.++...|.+.|++...+++.
T Consensus 9 g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 9 GADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeE
Confidence 34566665 466889999999999999999888874
No 451
>TIGR00778 ahpD_dom alkylhydroperoxidase AhpD family core domain. Members of the family include the alkylhydroperoxidase AhpD of Mycobacterium tuberculosis, a macrophage infectivity potentiator peptide of Legionella pneumophila, and an uncharacterized peptide in the tetrachloroethene reductive dehalogenase operon of Dehalospirillum multivorans. We suggest that many peptides containing this domain may have alkylhydroperoxidase or related antioxidant activity.
Probab=29.79 E-value=66 Score=16.00 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=13.7
Q ss_pred CCChhhHHHHHH-HhhCCCCc
Q 037432 25 SGCCMCTVAKRL-LFSLGVGP 44 (111)
Q Consensus 25 ~~Cp~C~~~~~~-l~~~~v~~ 44 (111)
.+|+||...... ..+.|+..
T Consensus 19 ~~C~yc~~~H~~~a~~~G~~~ 39 (50)
T TIGR00778 19 NGCGYCLDAHTKLARKAGVTA 39 (50)
T ss_pred cCCHHHHHHHHHHHHHcCCCH
Confidence 579999988754 34556643
No 452
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=29.41 E-value=71 Score=18.95 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=11.0
Q ss_pred EEEECCEEE--eccHHHHHH
Q 037432 76 AIFVGGKFL--GGIETLMAC 93 (111)
Q Consensus 76 ~vfi~g~~i--gg~~~~~~~ 93 (111)
..|.||++. -..+++.++
T Consensus 51 v~~~GGEPll~~~~~~l~~~ 70 (119)
T PF13394_consen 51 VVFTGGEPLLYLNPEDLIEL 70 (119)
T ss_dssp EEEESSSGGGSTTHHHHHHH
T ss_pred EEEECCCCccccCHHHHHHH
Confidence 567788876 455545444
No 453
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=29.31 E-value=2.5e+02 Score=21.16 Aligned_cols=86 Identities=12% Similarity=0.178 Sum_probs=53.4
Q ss_pred hHHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhhCCCCcEEE-E-----------ccC-----------Ccc--hHHHH
Q 037432 5 KTYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIV-E-----------LDH-----------HVA--GREIQ 59 (111)
Q Consensus 5 ~~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i-~-----------v~~-----------~~~--~~~~~ 59 (111)
.+...+.++++..-+.||+-..|..-..+..+.+++.|++-.. . ++. .|. .....
T Consensus 50 ~~~~~ac~l~~~gV~AI~Gp~s~~~a~~v~sic~~l~VP~is~~~~~~~~~~~~~~~~p~~~~~~~~~~lrp~~~~~~Ai 129 (400)
T cd06392 50 QAVQEACDLMTQGILALVTSTGCASANALQSLTDAMHIPHLFVQRNSGGSPRTACHLNPSPEGEEYTLAARPPVRLNDVM 129 (400)
T ss_pred HHHHHHHHHHhcCeEEEECCCchhHHHHHHHHhccCcCCcEeecccccccccccccCCCCcCcCceeEEecCchHHHHHH
Confidence 3455566677666677888888888888889999999987554 1 111 111 22222
Q ss_pred HHHHHHhCCCCCCcccEEEECCEEEeccHHHHHH
Q 037432 60 AVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMAC 93 (111)
Q Consensus 60 ~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~ 93 (111)
..+...++. +.|=.||-++.-..+..++.+.
T Consensus 130 ~dlV~~~~W---~~v~~iYD~d~gl~~lq~L~~~ 160 (400)
T cd06392 130 LKLVTELRW---QKFIVFYDSEYDIRGLQSFLDQ 160 (400)
T ss_pred HHHHHhCCC---cEEEEEEECcccHHHHHHHHHH
Confidence 345555564 8888888555556666555554
No 454
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.29 E-value=2.3e+02 Score=20.66 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=36.6
Q ss_pred cEEEEEeCC----ChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCC
Q 037432 18 AVVLFSISG----CCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSN 68 (111)
Q Consensus 18 ~vvif~~~~----Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~ 68 (111)
.+.++.... .-|-+...+..++.|+.++.+++..+....++.+.+.+...-
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (297)
T PRK14167 33 GLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNAD 87 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 454444433 445567777888999999999998877777777778777654
No 455
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=29.26 E-value=2.1e+02 Score=21.03 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=43.2
Q ss_pred hcCCcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEcc-----CCcchHHHHHHHHHHhCCCCCCcccEE-EECC
Q 037432 14 ASSNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELD-----HHVAGREIQAVLFQLSSNGQHQTVPAI-FVGG 81 (111)
Q Consensus 14 ~~~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~-----~~~~~~~~~~~l~~~~g~~~~~~vP~v-fi~g 81 (111)
+++..|.+|+-|+-.-...++.+-.+.++++-.+... +.-++.....+|-+... .+-|.| |+|.
T Consensus 149 WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~----~~aPcivFiDE 218 (368)
T COG1223 149 WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERAR----KAAPCIVFIDE 218 (368)
T ss_pred cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHH----hcCCeEEEehh
Confidence 4666788899999999999999999999998766542 22233333334444444 466776 5654
No 456
>PF05949 DUF881: Bacterial protein of unknown function (DUF881); InterPro: IPR010273 This family consists of a series of hypothetical bacterial proteins. One of the family members Q45543 from SWISSPROT from Bacillus subtilis is thought to be involved in cell division and sporulation [].; PDB: 3GMG_B.
Probab=29.26 E-value=1.2e+02 Score=19.49 Aligned_cols=34 Identities=32% Similarity=0.470 Sum_probs=24.8
Q ss_pred cEEEECCEE---------EeccHHHHHHHH-cCChHHHHHhcCc
Q 037432 75 PAIFVGGKF---------LGGIETLMACHI-NGTLVPLLKDAGA 108 (111)
Q Consensus 75 P~vfi~g~~---------igg~~~~~~~~~-~g~L~~~l~~~g~ 108 (111)
+.+.|||+. ||..+.+..... .+...+.++..|+
T Consensus 79 ~~i~Vng~~i~~Py~I~AIGdp~~L~~al~~~~~~~~~~~~~gi 122 (149)
T PF05949_consen 79 GTILVNGRPISPPYVIKAIGDPETLYSALNIPGGVVDSLRQRGI 122 (149)
T ss_dssp TEEEETTEEE-SSEEEEEES-HHHHHHHHTSTTSCHHHHHCTT-
T ss_pred CEEEECCEEccCCEEEEEEeCHHHHHHHHccccHHHHHHHHcCC
Confidence 578899964 688999998887 7777777776554
No 457
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=29.24 E-value=2.2e+02 Score=20.47 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCCcEEEEEeCCChhhHHHHHHHhh----CCCC--cEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE
Q 037432 6 TYEIVTHLASSNAVVLFSISGCCMCTVAKRLLFS----LGVG--PTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV 79 (111)
Q Consensus 6 ~~~~~~~~~~~~~vvif~~~~Cp~C~~~~~~l~~----~~v~--~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi 79 (111)
..+.+..+ +...+.+...+..+. ..+..+|+. .++. |..+.+...|....++..+.+ .|. ..==.+||
T Consensus 36 ~~e~L~~L-~~~Gi~lai~S~n~~-~~a~~~l~~~~~~~~~~~~f~~~~~~~~pk~~~i~~~~~~-l~i---~~~~~vfi 109 (320)
T TIGR01686 36 LQEKIKTL-KKQGFLLALASKNDE-DDAKKVFERRKDFILQAEDFDARSINWGPKSESLRKIAKK-LNL---GTDSFLFI 109 (320)
T ss_pred HHHHHHHH-HhCCCEEEEEcCCCH-HHHHHHHHhCccccCcHHHeeEEEEecCchHHHHHHHHHH-hCC---CcCcEEEE
Confidence 44555555 344677776677666 678888888 6654 455555555666555544444 554 33346888
Q ss_pred CCEE
Q 037432 80 GGKF 83 (111)
Q Consensus 80 ~g~~ 83 (111)
|+..
T Consensus 110 dD~~ 113 (320)
T TIGR01686 110 DDNP 113 (320)
T ss_pred CCCH
Confidence 8864
No 458
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=29.15 E-value=1.4e+02 Score=18.17 Aligned_cols=71 Identities=13% Similarity=0.003 Sum_probs=35.7
Q ss_pred HHHHHhhcC-CcEEEEEeCC-----ChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECC
Q 037432 8 EIVTHLASS-NAVVLFSISG-----CCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGG 81 (111)
Q Consensus 8 ~~~~~~~~~-~~vvif~~~~-----Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g 81 (111)
+.+.++.+. -+.+|--+|. -|.-...+...+++|+.|..+.|.......+..+.+.+.... ..-|++....
T Consensus 18 ~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~---~~~Pvl~hC~ 94 (110)
T PF04273_consen 18 EDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES---LPKPVLAHCR 94 (110)
T ss_dssp HHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT---TTTSEEEE-S
T ss_pred HHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh---CCCCEEEECC
Confidence 444444432 3355555543 466667888999999999999887655444444556665554 4458776554
No 459
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.98 E-value=2.3e+02 Score=20.51 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=37.0
Q ss_pred CcEEEEEeCCChhh----HHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCC
Q 037432 17 NAVVLFSISGCCMC----TVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSN 68 (111)
Q Consensus 17 ~~vvif~~~~Cp~C----~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~ 68 (111)
+++.+.....-|.. +...+..++.|+.++.+++..+....++.+.+.+...-
T Consensus 32 P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (282)
T PRK14180 32 PKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNND 87 (282)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34555554444444 46667788899999999999887777777778777654
No 460
>PF14268 YoaP: YoaP-like
Probab=28.96 E-value=57 Score=16.65 Aligned_cols=11 Identities=45% Similarity=0.921 Sum_probs=8.8
Q ss_pred EEEECCEEEec
Q 037432 76 AIFVGGKFLGG 86 (111)
Q Consensus 76 ~vfi~g~~igg 86 (111)
.+|.||+++-.
T Consensus 24 alFYnGkfiT~ 34 (44)
T PF14268_consen 24 ALFYNGKFITN 34 (44)
T ss_pred EEEECCEEEEe
Confidence 68999998743
No 461
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=28.94 E-value=1.7e+02 Score=21.41 Aligned_cols=44 Identities=16% Similarity=0.345 Sum_probs=27.2
Q ss_pred CCChhhH---------------HHHHHHhhCCCCcEEE---EccCCcch-----HHHHHHHHHHhCC
Q 037432 25 SGCCMCT---------------VAKRLLFSLGVGPTIV---ELDHHVAG-----REIQAVLFQLSSN 68 (111)
Q Consensus 25 ~~Cp~C~---------------~~~~~l~~~~v~~~~i---~v~~~~~~-----~~~~~~l~~~~g~ 68 (111)
..|+||. ++....+.+|++|..+ +-|.-+++ .+..+++++.+..
T Consensus 82 R~C~FC~V~~g~P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~ 148 (306)
T COG0320 82 RRCRFCDVKTGRPNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQ 148 (306)
T ss_pred cCCCccccCCCCCCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCC
Confidence 4699996 6777788899998655 33443332 2334455555543
No 462
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=28.84 E-value=1.7e+02 Score=20.68 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=25.2
Q ss_pred EEEEEeCCChhhHH-------HHHHHhhCCC-CcEEEEccC-CcchHHHHHHHHHHhC
Q 037432 19 VVLFSISGCCMCTV-------AKRLLFSLGV-GPTIVELDH-HVAGREIQAVLFQLSS 67 (111)
Q Consensus 19 vvif~~~~Cp~C~~-------~~~~l~~~~v-~~~~i~v~~-~~~~~~~~~~l~~~~g 67 (111)
||.+....|.+|.. ++..|.+.|. +..++-|.. .+..+.+..+|+....
T Consensus 30 vVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~ 87 (238)
T PF04592_consen 30 VVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVS 87 (238)
T ss_pred eeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCC
Confidence 44566789999974 3333444454 233333433 2333333345666554
No 463
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=28.84 E-value=1.4e+02 Score=19.05 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHHHHHcCChHHHHHhcCcc
Q 037432 55 GREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGAL 109 (111)
Q Consensus 55 ~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~~~~~g~L~~~l~~~g~~ 109 (111)
..++...+....+. ..-|.|++.+..-..++++.+ ....|+++|..
T Consensus 81 ~~~l~~~l~~~~~~---~~~~~v~i~aD~~v~y~~vv~------vm~~l~~aG~~ 126 (137)
T COG0848 81 LEELEAALAALAKG---KKNPRVVIRADKNVKYGTVVK------VMDLLKEAGFK 126 (137)
T ss_pred HHHHHHHHHHHhcC---CCCceEEEEeCCCCCHHHHHH------HHHHHHHcCCc
Confidence 34455667777754 555678887776666666665 44566777654
No 464
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=28.77 E-value=2.3e+02 Score=20.74 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=36.7
Q ss_pred CCChhhHHHHHHHhhCCCCcEEEEccC-CcchHHHHHHHHHHhCCCCCCcccEE-EECCEEEeccHHHH
Q 037432 25 SGCCMCTVAKRLLFSLGVGPTIVELDH-HVAGREIQAVLFQLSSNGQHQTVPAI-FVGGKFLGGIETLM 91 (111)
Q Consensus 25 ~~Cp~C~~~~~~l~~~~v~~~~i~v~~-~~~~~~~~~~l~~~~g~~~~~~vP~v-fi~g~~igg~~~~~ 91 (111)
.....|.++...|++.|+..+.+|+.. .|-..+......+.++. .+ +-++...||+-+.+
T Consensus 211 ~~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~-------vv~vEE~~~~gGlG~~v 272 (327)
T CHL00144 211 RMRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHK-------VLIVEECMKTGGIGAEL 272 (327)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCc-------EEEEECCCCCCCHHHHH
Confidence 446677888899999999999999864 34334322223333342 33 33455568875433
No 465
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.60 E-value=19 Score=19.84 Aligned_cols=7 Identities=29% Similarity=0.852 Sum_probs=5.5
Q ss_pred CChhhHH
Q 037432 26 GCCMCTV 32 (111)
Q Consensus 26 ~Cp~C~~ 32 (111)
.||||-+
T Consensus 50 ~CPYC~t 56 (62)
T COG4391 50 VCPYCST 56 (62)
T ss_pred ecCcccc
Confidence 4999964
No 466
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=27.83 E-value=86 Score=18.76 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=5.1
Q ss_pred EEEEEeC-CChh
Q 037432 19 VVLFSIS-GCCM 29 (111)
Q Consensus 19 vvif~~~-~Cp~ 29 (111)
|+-|.+- +||-
T Consensus 30 viaf~tCGgCpG 41 (101)
T COG5561 30 VIAFITCGGCPG 41 (101)
T ss_pred EEEEEEcCCCCc
Confidence 3334443 5555
No 467
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=27.54 E-value=1.9e+02 Score=19.09 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=41.3
Q ss_pred HHHHHhhcC---CcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE
Q 037432 8 EIVTHLASS---NAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV 79 (111)
Q Consensus 8 ~~~~~~~~~---~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi 79 (111)
++.+++.++ -.|++.+++ ..+......+.+++.+...+..... ..+.+...++. .++|.+.+
T Consensus 57 ~fYe~l~~~~~~fEVvfVS~D--~~~~~~~~y~~~~~~~W~~iPf~d~-----~~~~l~~ky~v---~~iP~l~i 121 (157)
T KOG2501|consen 57 DFYEELKDNAAPFEVVFVSSD--RDEESLDEYMLEHHGDWLAIPFGDD-----LIQKLSEKYEV---KGIPALVI 121 (157)
T ss_pred HHHHHHHhcCCceEEEEEecC--CCHHHHHHHHHhcCCCeEEecCCCH-----HHHHHHHhccc---CcCceeEE
Confidence 444444443 234444444 4888999999998888877765533 33568889998 88888754
No 468
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=27.53 E-value=1.1e+02 Score=16.29 Aligned_cols=14 Identities=7% Similarity=-0.175 Sum_probs=6.0
Q ss_pred hHHHHHHHhhCCCC
Q 037432 30 CTVAKRLLFSLGVG 43 (111)
Q Consensus 30 C~~~~~~l~~~~v~ 43 (111)
...+..++++.|..
T Consensus 39 ~~~i~~~~~~~g~~ 52 (69)
T cd00291 39 VEDIPAWAKETGHE 52 (69)
T ss_pred HHHHHHHHHHcCCE
Confidence 33444444444443
No 469
>PLN02907 glutamate-tRNA ligase
Probab=27.36 E-value=3.6e+02 Score=22.31 Aligned_cols=55 Identities=18% Similarity=0.116 Sum_probs=36.7
Q ss_pred EEEEEeCC-ChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEE-CCEEEeccHHHHHHH
Q 037432 19 VVLFSISG-CCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFV-GGKFLGGIETLMACH 94 (111)
Q Consensus 19 vvif~~~~-Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi-~g~~igg~~~~~~~~ 94 (111)
+.+|+.+. ||+ ++..++...+++|+..+. ... .++|++.. ||..+-+...|..+.
T Consensus 3 ~kLy~~~~S~~~--~v~~~L~~lgv~~e~~~~----------------~p~---GkVPvLv~ddG~~L~ES~AIl~YL 59 (722)
T PLN02907 3 AKLSFPPDSPPL--AVIAAAKVAGVPLTIDPS----------------LKS---GSAPTLLFSSGEKLTGTNVLLRYI 59 (722)
T ss_pred EEEEECCCCChH--HHHHHHHHcCCCcEEeec----------------CCC---CCCcEEEECCCCEEECHHHHHHHH
Confidence 56777665 444 477778999999887651 123 68898876 676666666555543
No 470
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.26 E-value=51 Score=18.23 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=9.1
Q ss_pred HHHHHHhhCCCCcE
Q 037432 32 VAKRLLFSLGVGPT 45 (111)
Q Consensus 32 ~~~~~l~~~~v~~~ 45 (111)
.+..+|++.++.+.
T Consensus 54 ~i~~~l~~~~i~~~ 67 (73)
T PF11823_consen 54 KIKEILEENGIEYE 67 (73)
T ss_pred HHHHHHHHCCCCee
Confidence 56666667676664
No 471
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=27.23 E-value=94 Score=18.73 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.0
Q ss_pred CcccEEE-ECCEEEeccHHHHHHHH
Q 037432 72 QTVPAIF-VGGKFLGGIETLMACHI 95 (111)
Q Consensus 72 ~~vP~vf-i~g~~igg~~~~~~~~~ 95 (111)
..||.+| .+...+-|.||+....+
T Consensus 3 ~dV~v~~~~~~v~WvgaDEil~IL~ 27 (97)
T PF04512_consen 3 TDVPVFFDVDMVLWVGADEILSILR 27 (97)
T ss_pred CCeeEEEecCceEEecHHHHHHHhC
Confidence 6799999 99999999999988754
No 472
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=27.18 E-value=23 Score=18.53 Aligned_cols=7 Identities=43% Similarity=1.042 Sum_probs=4.6
Q ss_pred eCCChhh
Q 037432 24 ISGCCMC 30 (111)
Q Consensus 24 ~~~Cp~C 30 (111)
..+||+|
T Consensus 49 ~~~CP~C 55 (55)
T PF14311_consen 49 GKGCPYC 55 (55)
T ss_pred CCCCCCC
Confidence 3567777
No 473
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=27.13 E-value=23 Score=24.67 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=10.6
Q ss_pred CCChhhHHHHHHHh
Q 037432 25 SGCCMCTVAKRLLF 38 (111)
Q Consensus 25 ~~Cp~C~~~~~~l~ 38 (111)
..||||+++.++=.
T Consensus 190 ArCPHCrKvSsvGs 203 (275)
T KOG4684|consen 190 ARCPHCRKVSSVGS 203 (275)
T ss_pred hcCCcccchhhhhh
Confidence 36999998876544
No 474
>PRK08118 topology modulation protein; Reviewed
Probab=27.04 E-value=1.1e+02 Score=19.85 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=27.2
Q ss_pred CcEEEEEeCCChhhHHHHHHHhhCCCCcEEEE
Q 037432 17 NAVVLFSISGCCMCTVAKRLLFSLGVGPTIVE 48 (111)
Q Consensus 17 ~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~ 48 (111)
.+|+|++.++|.-..-++.+-+.+++++...|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 57899999999999999999999998865554
No 475
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.99 E-value=2.2e+02 Score=19.73 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=50.8
Q ss_pred hcCCc-EEEEEeCCChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHH
Q 037432 14 ASSNA-VVLFSISGCCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMA 92 (111)
Q Consensus 14 ~~~~~-vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~ 92 (111)
+..++ +-++....=..+..+-+.|-+-|++.-++-... +...+..+.|.+..+ ...|.+.++-=-|=..++..+
T Consensus 12 l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~t-p~a~~~i~~l~~~~~----~~~p~~~vGaGTVl~~e~a~~ 86 (222)
T PRK07114 12 MKATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRG-DFAHEVFAELVKYAA----KELPGMILGVGSIVDAATAAL 86 (222)
T ss_pred HHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC-CcHHHHHHHHHHHHH----hhCCCeEEeeEeCcCHHHHHH
Confidence 33455 445666666667788888889999987777654 334444455655555 467888887666666666666
Q ss_pred HHHcC
Q 037432 93 CHING 97 (111)
Q Consensus 93 ~~~~g 97 (111)
+.+.|
T Consensus 87 a~~aG 91 (222)
T PRK07114 87 YIQLG 91 (222)
T ss_pred HHHcC
Confidence 65544
No 476
>CHL00195 ycf46 Ycf46; Provisional
Probab=26.93 E-value=3.1e+02 Score=21.45 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=30.3
Q ss_pred CCcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEcc
Q 037432 16 SNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELD 50 (111)
Q Consensus 16 ~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~ 50 (111)
+..|.+|+-|+|.-..-++.+-.+.+.++..++..
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~ 293 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVG 293 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhH
Confidence 34599999999999999999999999998877764
No 477
>PRK07758 hypothetical protein; Provisional
Probab=26.87 E-value=58 Score=19.59 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=8.6
Q ss_pred cEEEEEeCCChhhH
Q 037432 18 AVVLFSISGCCMCT 31 (111)
Q Consensus 18 ~vvif~~~~Cp~C~ 31 (111)
.-..|-++.||.|-
T Consensus 13 ~~~~~~~~~~~~~~ 26 (95)
T PRK07758 13 GHEYYKSSDCPTCP 26 (95)
T ss_pred ccceeccCCCCCCc
Confidence 34567676666663
No 478
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=26.63 E-value=1.3e+02 Score=21.30 Aligned_cols=42 Identities=7% Similarity=-0.043 Sum_probs=29.8
Q ss_pred hhHHHHHHHhhcCCcEEEEEeCCCh-hhHHHHHHHhhCCCCcE
Q 037432 4 EKTYEIVTHLASSNAVVLFSISGCC-MCTVAKRLLFSLGVGPT 45 (111)
Q Consensus 4 ~~~~~~~~~~~~~~~vvif~~~~Cp-~C~~~~~~l~~~~v~~~ 45 (111)
..+.+..++++..++|.....+.+. .+..+.+++.+.++++-
T Consensus 51 ~~a~~~~~~lv~~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i 93 (333)
T cd06359 51 DVAKQAAERLIKRDKVDFVTGVVFSNVLLAVVPPVLESGTFYI 93 (333)
T ss_pred HHHHHHHHHHHhhcCCcEEEccCCcHHHHHHHHHHHHcCCeEE
Confidence 3566778888877666655556554 47788889988888764
No 479
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=26.45 E-value=79 Score=19.07 Aligned_cols=42 Identities=10% Similarity=0.053 Sum_probs=25.4
Q ss_pred HHhhCCCCcEEEEcc-CCcchHHHHHHHHHHhCCCCCCcccEEEECC
Q 037432 36 LLFSLGVGPTIVELD-HHVAGREIQAVLFQLSSNGQHQTVPAIFVGG 81 (111)
Q Consensus 36 ~l~~~~v~~~~i~v~-~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g 81 (111)
+|.+..+.+....-. ..|...++++.|++.++. ..-.|+|.|
T Consensus 13 LL~Rke~~~~v~h~g~~tpsr~eirekLa~~~~~----~~~~vvv~~ 55 (99)
T PRK01178 13 LLGRREIKFEVYHEGSATPSRKDVRKKLAAMLNA----DKELVVVRK 55 (99)
T ss_pred CcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCc----CCCEEEEEc
Confidence 344444444444333 466778888889998884 445566655
No 480
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=26.32 E-value=1.4e+02 Score=21.15 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=29.1
Q ss_pred hhHHHHHHHhhcCCcEEEEEeCCCh-hhHHHHHHHhhCCCCc
Q 037432 4 EKTYEIVTHLASSNAVVLFSISGCC-MCTVAKRLLFSLGVGP 44 (111)
Q Consensus 4 ~~~~~~~~~~~~~~~vvif~~~~Cp-~C~~~~~~l~~~~v~~ 44 (111)
..+.+.+++++...+|.....+.|+ .|..+.+++++.++++
T Consensus 52 ~~a~~~a~~l~~~~~v~~viG~~~s~~~~a~~~~~~~~~ip~ 93 (350)
T cd06366 52 VQAASAALDLLENKPVVAIIGPQCSSVAEFVAEVANEWNVPV 93 (350)
T ss_pred HHHHHHHHHHhccCCceEEECCCcHHHHHHHHHHhhcCCeeE
Confidence 3466777888887666666656664 5667778888888775
No 481
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=26.25 E-value=1.3e+02 Score=21.69 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=29.4
Q ss_pred hhHHHHHHHhhcCCcEEEEEeCCCh-hhHHHHHHHhhCCCCc
Q 037432 4 EKTYEIVTHLASSNAVVLFSISGCC-MCTVAKRLLFSLGVGP 44 (111)
Q Consensus 4 ~~~~~~~~~~~~~~~vvif~~~~Cp-~C~~~~~~l~~~~v~~ 44 (111)
..+.....+++.+.+|.....+.|. .|..+.+++.+.++++
T Consensus 54 ~~a~~~a~~l~~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~ 95 (389)
T cd06352 54 SVALLAAVDLYWEHNVDAFIGPGCPYACAPVARLAAHWNIPM 95 (389)
T ss_pred hhhHHHHHHHHhhcCCcEEECCCChhHHHHHHHHHhcCCCCE
Confidence 3455666777776677666667777 6778888998887764
No 482
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=26.22 E-value=66 Score=23.54 Aligned_cols=30 Identities=17% Similarity=0.076 Sum_probs=21.5
Q ss_pred EEeCCChhhHHHHHHHhhC-----CCCcEEEEccC
Q 037432 22 FSISGCCMCTVAKRLLFSL-----GVGPTIVELDH 51 (111)
Q Consensus 22 f~~~~Cp~C~~~~~~l~~~-----~v~~~~i~v~~ 51 (111)
..--+|..|++++.+|+.+ .+.|.-+||..
T Consensus 80 lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 80 LVELGSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred EEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 3357899999999988876 24566666654
No 483
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=26.19 E-value=1.4e+02 Score=17.19 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=14.5
Q ss_pred CcccEEEECCEEEeccH
Q 037432 72 QTVPAIFVGGKFLGGIE 88 (111)
Q Consensus 72 ~~vP~vfi~g~~igg~~ 88 (111)
..-|..+|||+.|-|-+
T Consensus 44 ~~~pFAlVnG~~V~A~t 60 (78)
T PF07293_consen 44 AKKPFALVNGEIVAAET 60 (78)
T ss_pred CCCccEEECCEEEecCC
Confidence 67899999999997763
No 484
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=26.07 E-value=40 Score=16.32 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=8.2
Q ss_pred HHHHHHhhCCCCc
Q 037432 32 VAKRLLFSLGVGP 44 (111)
Q Consensus 32 ~~~~~l~~~~v~~ 44 (111)
..+.+|.++||.|
T Consensus 8 ~Lk~iL~~~~I~~ 20 (35)
T PF12949_consen 8 QLKRILDEHGIEF 20 (35)
T ss_dssp HHHHHHHHHT---
T ss_pred HHHHHHHHcCCCC
Confidence 6788888888866
No 485
>KOG4749 consensus Inositol polyphosphate kinase [Signal transduction mechanisms]
Probab=25.77 E-value=1.7e+02 Score=21.83 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=29.7
Q ss_pred CChhhHHHHHHHhhCCC----CcEEEEccCCcchHHHHHHHHHHhCCCCCCcccEEEECCEEE
Q 037432 26 GCCMCTVAKRLLFSLGV----GPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFL 84 (111)
Q Consensus 26 ~Cp~C~~~~~~l~~~~v----~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~i 84 (111)
-|-+|..-..-+.+..+ +|-..|+-.... ..++.+++..+.. +..==.||+||..|
T Consensus 156 ~cr~cm~QvlK~~~~~~sqisey~PLDLfSG~k-~rm~~AikaL~~~--pqnnlrvF~nG~lv 215 (375)
T KOG4749|consen 156 ICRFCMHQVLKLRENHISQISEYDPLDLFSGSK-ERMHKAIKALYST--PQNNLRVFLNGSLV 215 (375)
T ss_pred hhHHHHHHHHHHhhcchhhhhccCchhhccccH-HHHHHHHHHHhhc--cccceeEEecccee
Confidence 36667533333333333 344555554443 3356677776543 12222689999876
No 486
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.61 E-value=47 Score=17.99 Aligned_cols=15 Identities=13% Similarity=0.441 Sum_probs=11.0
Q ss_pred EEeCCChhhHHHHHH
Q 037432 22 FSISGCCMCTVAKRL 36 (111)
Q Consensus 22 f~~~~Cp~C~~~~~~ 36 (111)
|++..||.|.....-
T Consensus 26 ~TSq~C~~CG~~~~~ 40 (69)
T PF07282_consen 26 YTSQTCPRCGHRNKK 40 (69)
T ss_pred CCccCccCccccccc
Confidence 667789999765554
No 487
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=25.38 E-value=2.8e+02 Score=20.33 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=23.3
Q ss_pred CcccEEEECCEE------------EeccHHHHHHHHcCChHHHHHhcCccc
Q 037432 72 QTVPAIFVGGKF------------LGGIETLMACHINGTLVPLLKDAGALW 110 (111)
Q Consensus 72 ~~vP~vfi~g~~------------igg~~~~~~~~~~g~L~~~l~~~g~~~ 110 (111)
..+|.+-.+|+. -|.-+-...+.++|-|+++++ .|.-|
T Consensus 110 ~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~-~G~~y 159 (323)
T cd04193 110 GMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKK-RGIKY 159 (323)
T ss_pred CceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHh-CCCEE
Confidence 567777666643 244455566777887777554 66554
No 488
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=25.27 E-value=2.4e+02 Score=20.97 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=41.8
Q ss_pred cEEEEE-eCCChhhHHHHHHHhhCCCCcEEEEccC-CcchHHHHHHHHHHhCCCCCCcccEEEECCEEEeccHHHHH
Q 037432 18 AVVLFS-ISGCCMCTVAKRLLFSLGVGPTIVELDH-HVAGREIQAVLFQLSSNGQHQTVPAIFVGGKFLGGIETLMA 92 (111)
Q Consensus 18 ~vvif~-~~~Cp~C~~~~~~l~~~~v~~~~i~v~~-~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~igg~~~~~~ 92 (111)
.+++.+ .+....|.++...|.+.|+..+.+|+.. .|-..+....+.+.++. + .++-++...||+-+.+.
T Consensus 230 dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~-----v-vtvEE~~~~GGlGs~Va 300 (356)
T PLN02683 230 DVTIVAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNR-----L-VTVEEGWPQHGVGAEIC 300 (356)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCe-----E-EEEeCCCcCCCHHHHHH
Confidence 455544 4567778888888999999999999864 33334332233333332 2 33445566788854333
No 489
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=24.98 E-value=79 Score=20.86 Aligned_cols=17 Identities=12% Similarity=0.472 Sum_probs=14.6
Q ss_pred CcccEEEECCEEEeccH
Q 037432 72 QTVPAIFVGGKFLGGIE 88 (111)
Q Consensus 72 ~~vP~vfi~g~~igg~~ 88 (111)
..-|.+.|||+.+|+..
T Consensus 129 ~~AP~vmind~~~~~lt 145 (160)
T COG1905 129 GQAPVVMINDDVYGRLT 145 (160)
T ss_pred ccCCEEEECCchhccCC
Confidence 56799999999999864
No 490
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=24.97 E-value=1.3e+02 Score=22.39 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=32.0
Q ss_pred hhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCCCCCCcccE-EEECCEEEec
Q 037432 29 MCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSNGQHQTVPA-IFVGGKFLGG 86 (111)
Q Consensus 29 ~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~~~~~~vP~-vfi~g~~igg 86 (111)
+.+...++|+.++++|..++-+..+....+.++++.... ..-|. +.+....+..
T Consensus 103 ~G~~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~----~~~p~a~l~~~~~~~~ 157 (361)
T TIGR03297 103 QGRITLSLLDALEIPWEVLSTDNDEALAQIERALAHALA----TSRPYALVVRKGTFAS 157 (361)
T ss_pred HhHHHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHH----HCCCEEEEEccccccc
Confidence 366788999999999998853333333344445544443 23343 4566555544
No 491
>PF11521 TFIIE-A_C-term: C-terminal general transcription factor TFIIE alpha; InterPro: IPR021600 TFIIE is compiled of two subunits, alpha and beta. This family of proteins are the C-terminal domain of the alpha subunit of the protein which is the largest subunit and contains several functional domains which are important for basal transcription and cell growth. The C-terminal end of the protein binds directly to the amino-terminal PH domain of p62/Tfb1 (of IIH) which is involved in the recruitment of the general transcription factor IIH to the transcription preinitiation complex. P53 competes for the same binding site as TFIIE alpha which shows their structural similarity. Like p53, TFIIE alpha 336-439 can activate transcription in vivo []. ; PDB: 2RNR_A 2RNQ_A 2JTX_A.
Probab=24.87 E-value=67 Score=18.89 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=9.6
Q ss_pred cccEEEECCEEE
Q 037432 73 TVPAIFVGGKFL 84 (111)
Q Consensus 73 ~vP~vfi~g~~i 84 (111)
-.|+|+|+|+.+
T Consensus 39 d~p~V~V~Gr~~ 50 (86)
T PF11521_consen 39 DDPTVMVAGRPY 50 (86)
T ss_dssp SS-EEEETTEEE
T ss_pred cCceEEECCEEe
Confidence 589999999976
No 492
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=24.67 E-value=23 Score=22.00 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=20.9
Q ss_pred ChhhHHHHHHHhhCCCC-c--EEEEccCCcchHH
Q 037432 27 CCMCTVAKRLLFSLGVG-P--TIVELDHHVAGRE 57 (111)
Q Consensus 27 Cp~C~~~~~~l~~~~v~-~--~~i~v~~~~~~~~ 57 (111)
||.|.+..+.|.+.+.= | +...+|.+-++.+
T Consensus 72 CP~C~K~TKmLGr~D~CM~C~~pLTLd~~legke 105 (114)
T PF11023_consen 72 CPNCGKQTKMLGRVDACMHCKEPLTLDPSLEGKE 105 (114)
T ss_pred CCCCCChHhhhchhhccCcCCCcCccCchhhcch
Confidence 99999999999876421 1 3445566555553
No 493
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=24.64 E-value=1.3e+02 Score=16.42 Aligned_cols=27 Identities=7% Similarity=-0.066 Sum_probs=19.0
Q ss_pred hhHHHHHHHhhCCCCcEEEEccCCcch
Q 037432 29 MCTVAKRLLFSLGVGPTIVELDHHVAG 55 (111)
Q Consensus 29 ~C~~~~~~l~~~~v~~~~i~v~~~~~~ 55 (111)
.|-.+...|...||.|..+.|..+.+.
T Consensus 11 ~~lE~A~~La~~GIRFVpiPv~~dee~ 37 (61)
T PF07131_consen 11 KALEMAHSLAHIGIRFVPIPVVTDEEF 37 (61)
T ss_pred HHHHHHHHHHHcCceeeccccccHHHH
Confidence 355666778888888888877655543
No 494
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=24.59 E-value=3e+02 Score=20.52 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=27.5
Q ss_pred CcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEc
Q 037432 17 NAVVLFSISGCCMCTVAKRLLFSLGVGPTIVEL 49 (111)
Q Consensus 17 ~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v 49 (111)
..|.+|+-|+|.--.-++.+..+.+.++..+..
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~ 198 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 198 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHhCCCEEEeeh
Confidence 348999999999999999999988887766654
No 495
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=24.54 E-value=3.4e+02 Score=21.03 Aligned_cols=63 Identities=13% Similarity=0.030 Sum_probs=41.1
Q ss_pred cEEEEEeCCChhhHHHHHHHhhCCCCcEEEEccC--CcchHHHHHHHHHHhCCCCCCcccEEEECCEE
Q 037432 18 AVVLFSISGCCMCTVAKRLLFSLGVGPTIVELDH--HVAGREIQAVLFQLSSNGQHQTVPAIFVGGKF 83 (111)
Q Consensus 18 ~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~~--~~~~~~~~~~l~~~~g~~~~~~vP~vfi~g~~ 83 (111)
..++|+-|+|.-..-++-+-...+.+|..++-.. ..+-+++.+.-+...+. ..-+.+|+|..+
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~---gr~tiLflDEIH 114 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLL---GRRTILFLDEIH 114 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhc---CCceEEEEehhh
Confidence 3778889999988888888888888888887533 23334433333333333 344578888743
No 496
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=24.52 E-value=3.2e+02 Score=21.27 Aligned_cols=47 Identities=19% Similarity=0.097 Sum_probs=36.7
Q ss_pred hhHHHHHHHhhc--CCcEEEEEeCCChhhHHHHHHHhhCCCCcEEEEcc
Q 037432 4 EKTYEIVTHLAS--SNAVVLFSISGCCMCTVAKRLLFSLGVGPTIVELD 50 (111)
Q Consensus 4 ~~~~~~~~~~~~--~~~vvif~~~~Cp~C~~~~~~l~~~~v~~~~i~v~ 50 (111)
.++.+.+.+++. ..+-++.+++.-..=..+..+|.+.|+..-+-|+.
T Consensus 88 edA~~ii~~iv~~k~~k~vVKsKSmvseEIgln~~Le~~G~ev~ETDLG 136 (459)
T COG1139 88 EDAREIIGEIVGEKNGKKVVKSKSMVSEEIGLNHYLEEKGIEVWETDLG 136 (459)
T ss_pred HHHHHHHHHHHhhccCcEEEEecchhHHHhhhHHHHHHcCCeEEEccHH
Confidence 567777888877 66788888888777788899999998877665554
No 497
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.51 E-value=2.8e+02 Score=20.14 Aligned_cols=51 Identities=10% Similarity=0.203 Sum_probs=36.8
Q ss_pred cEEEEEeCC----ChhhHHHHHHHhhCCCCcEEEEccCCcchHHHHHHHHHHhCC
Q 037432 18 AVVLFSISG----CCMCTVAKRLLFSLGVGPTIVELDHHVAGREIQAVLFQLSSN 68 (111)
Q Consensus 18 ~vvif~~~~----Cp~C~~~~~~l~~~~v~~~~i~v~~~~~~~~~~~~l~~~~g~ 68 (111)
.+.++.... .-|-+.-.+..++.|++++.+++..+-...++.+.+.+...-
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (295)
T PRK14174 33 GLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNND 87 (295)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 455555444 444456677888899999999998887777777778777654
No 498
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.37 E-value=1.8e+02 Score=20.59 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=28.8
Q ss_pred hhHHHHHHHhhcCCcEEEEEeCCChh-hHHHHHHHhhCCCCc
Q 037432 4 EKTYEIVTHLASSNAVVLFSISGCCM-CTVAKRLLFSLGVGP 44 (111)
Q Consensus 4 ~~~~~~~~~~~~~~~vvif~~~~Cp~-C~~~~~~l~~~~v~~ 44 (111)
..+.+.+++++...+|.....+.|+. +..+.+++++.++++
T Consensus 53 ~~a~~~~~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~ 94 (344)
T cd06348 53 AEAINAFQTLINKDRVLAIIGPTLSQQAFAADPIAERAGVPV 94 (344)
T ss_pred HHHHHHHHHHhhhcCceEEECCCCcHHHHhhhHHHHhCCCCE
Confidence 45677888888876666555566655 456678888887765
No 499
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=24.28 E-value=1.9e+02 Score=19.69 Aligned_cols=66 Identities=20% Similarity=0.292 Sum_probs=36.0
Q ss_pred EEeCCChhhHHHHHHHhhCCCCcEEE--EccCCcc----hHHHHHHHHH---HhCCCCCCccc----------EEEECCE
Q 037432 22 FSISGCCMCTVAKRLLFSLGVGPTIV--ELDHHVA----GREIQAVLFQ---LSSNGQHQTVP----------AIFVGGK 82 (111)
Q Consensus 22 f~~~~Cp~C~~~~~~l~~~~v~~~~i--~v~~~~~----~~~~~~~l~~---~~g~~~~~~vP----------~vfi~g~ 82 (111)
+-.+..| +=+.+|++.|++|+.+ |+|+.+. .++.-..|++ .... ...| ++.+||+
T Consensus 6 iLAS~SP---rR~elL~~~gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA~~va---~~~~~~~~VigaDtvv~ldgr 79 (193)
T COG0424 6 ILASSSP---RRRELLEQLGIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKARAVA---ARLPPDALVIGADTVVVLDGR 79 (193)
T ss_pred EEecCCH---HHHHHHHHCCCCeEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHH---HhCCCCCEEEecCeEEEECCE
Confidence 3344445 5568899999998776 4554431 2222222211 1111 2333 3577888
Q ss_pred EEeccHHHHHH
Q 037432 83 FLGGIETLMAC 93 (111)
Q Consensus 83 ~igg~~~~~~~ 93 (111)
..|=..+..++
T Consensus 80 ilgKP~~~~eA 90 (193)
T COG0424 80 ILGKPKDEEEA 90 (193)
T ss_pred EecCCCCHHHH
Confidence 88877665554
No 500
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=24.16 E-value=27 Score=23.33 Aligned_cols=11 Identities=18% Similarity=0.736 Sum_probs=0.0
Q ss_pred EEeCCChhhHH
Q 037432 22 FSISGCCMCTV 32 (111)
Q Consensus 22 f~~~~Cp~C~~ 32 (111)
|....||-|.+
T Consensus 167 ~~~~~c~~~~~ 177 (187)
T TIGR01367 167 YDSHECPLCLA 177 (187)
T ss_pred cCcccCChhhc
Done!