Query 037433
Match_columns 181
No_of_seqs 236 out of 1833
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 12:12:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462 C2H2-type Zn-finger pr 99.8 1.2E-20 2.6E-25 150.2 2.2 96 7-104 165-262 (279)
2 KOG2462 C2H2-type Zn-finger pr 99.8 2.4E-19 5.2E-24 142.8 2.2 77 7-83 191-267 (279)
3 KOG3576 Ovo and related transc 99.6 2.3E-16 5E-21 120.9 -0.3 101 7-107 121-234 (267)
4 KOG3623 Homeobox transcription 99.5 1.2E-15 2.6E-20 134.5 0.8 74 7-80 898-971 (1007)
5 KOG3623 Homeobox transcription 99.3 5.3E-13 1.2E-17 118.0 1.5 86 27-112 890-977 (1007)
6 KOG3608 Zn finger proteins [Ge 99.2 1.6E-12 3.4E-17 107.1 -0.1 100 8-107 184-285 (467)
7 PHA02768 hypothetical protein; 99.1 4.8E-11 1E-15 73.6 2.6 44 31-76 5-48 (55)
8 KOG1074 Transcriptional repres 99.0 4.9E-11 1.1E-15 107.1 1.1 51 31-81 605-655 (958)
9 KOG1074 Transcriptional repres 99.0 1.8E-10 3.8E-15 103.6 3.9 78 9-86 611-695 (958)
10 KOG3576 Ovo and related transc 99.0 3.7E-11 8.1E-16 92.5 -0.9 80 28-107 114-195 (267)
11 PHA00733 hypothetical protein 98.9 2E-09 4.3E-14 78.5 4.9 61 19-82 62-122 (128)
12 PF13465 zf-H2C2_2: Zinc-finge 98.7 4E-09 8.6E-14 55.7 1.2 24 47-70 2-25 (26)
13 PLN03086 PRLI-interacting fact 98.7 2.7E-08 5.8E-13 88.0 5.9 83 7-94 457-550 (567)
14 PHA00733 hypothetical protein 98.7 9.6E-09 2.1E-13 74.9 2.0 87 18-104 27-118 (128)
15 PF13465 zf-H2C2_2: Zinc-finge 98.6 1.9E-08 4.1E-13 53.1 1.7 26 18-43 1-26 (26)
16 KOG3608 Zn finger proteins [Ge 98.5 7.7E-08 1.7E-12 79.8 4.1 99 7-106 267-373 (467)
17 PHA02768 hypothetical protein; 98.4 1.9E-07 4E-12 57.7 2.4 38 59-96 5-42 (55)
18 PHA00616 hypothetical protein 98.3 4E-07 8.7E-12 53.6 1.4 34 31-64 1-34 (44)
19 PHA00732 hypothetical protein 98.3 7.5E-07 1.6E-11 59.5 2.9 45 31-81 1-46 (79)
20 PLN03086 PRLI-interacting fact 98.0 1.1E-05 2.5E-10 71.6 5.3 70 9-81 483-562 (567)
21 COG5189 SFP1 Putative transcri 97.7 1.2E-05 2.5E-10 66.2 1.2 53 29-81 347-420 (423)
22 PF00096 zf-C2H2: Zinc finger, 97.7 2.3E-05 5.1E-10 39.6 1.8 23 32-54 1-23 (23)
23 PF05605 zf-Di19: Drought indu 97.7 7.2E-05 1.6E-09 46.2 4.2 50 31-83 2-53 (54)
24 PHA00732 hypothetical protein 97.5 6.3E-05 1.4E-09 50.2 2.4 38 59-96 1-38 (79)
25 KOG3993 Transcription factor ( 97.5 2.2E-05 4.8E-10 66.7 -0.2 76 9-84 273-381 (500)
26 PHA00616 hypothetical protein 97.3 6.8E-05 1.5E-09 44.2 0.3 31 59-89 1-33 (44)
27 PF13912 zf-C2H2_6: C2H2-type 97.3 0.00017 3.7E-09 37.8 1.6 25 31-55 1-25 (27)
28 PF00096 zf-C2H2: Zinc finger, 97.2 6.9E-05 1.5E-09 37.8 -0.2 22 60-81 1-22 (23)
29 PRK04860 hypothetical protein; 97.2 0.00024 5.1E-09 53.7 2.2 40 30-73 118-157 (160)
30 PF13894 zf-C2H2_4: C2H2-type 97.1 0.00041 8.9E-09 34.8 2.1 23 32-54 1-23 (24)
31 PF13894 zf-C2H2_4: C2H2-type 96.8 0.00038 8.2E-09 34.9 0.2 24 60-83 1-24 (24)
32 smart00355 ZnF_C2H2 zinc finge 96.7 0.0017 3.6E-08 32.9 2.3 24 32-55 1-24 (26)
33 COG5189 SFP1 Putative transcri 96.7 0.0011 2.3E-08 54.8 2.2 43 56-98 346-411 (423)
34 PF12756 zf-C2H2_2: C2H2 type 96.6 0.00085 1.8E-08 45.7 0.9 69 8-81 4-72 (100)
35 PF13912 zf-C2H2_6: C2H2-type 96.5 0.00059 1.3E-08 35.7 -0.2 25 59-83 1-25 (27)
36 PF09237 GAGA: GAGA factor; I 96.5 0.0032 6.9E-08 38.1 2.8 33 27-59 20-52 (54)
37 KOG3993 Transcription factor ( 96.1 0.0013 2.8E-08 56.2 -0.4 53 31-83 267-319 (500)
38 smart00355 ZnF_C2H2 zinc finge 95.9 0.0052 1.1E-07 30.9 1.7 23 60-82 1-23 (26)
39 PF12874 zf-met: Zinc-finger o 95.6 0.0063 1.4E-07 31.0 1.2 23 32-54 1-23 (25)
40 PF12171 zf-C2H2_jaz: Zinc-fin 94.6 0.014 3E-07 30.5 0.7 22 32-53 2-23 (27)
41 PF05605 zf-Di19: Drought indu 94.6 0.053 1.2E-06 33.2 3.5 48 5-55 4-53 (54)
42 KOG2893 Zn finger protein [Gen 94.3 0.017 3.7E-07 46.1 0.9 39 33-75 12-50 (341)
43 PF12756 zf-C2H2_2: C2H2 type 94.3 0.043 9.3E-07 37.1 2.8 25 31-55 50-74 (100)
44 COG5048 FOG: Zn-finger [Genera 93.7 0.022 4.9E-07 47.8 0.5 52 30-81 288-345 (467)
45 PF13909 zf-H2C2_5: C2H2-type 93.6 0.057 1.2E-06 27.1 1.8 22 32-54 1-22 (24)
46 PF13913 zf-C2HC_2: zinc-finge 93.5 0.063 1.4E-06 27.6 1.8 21 32-53 3-23 (25)
47 COG5048 FOG: Zn-finger [Genera 93.5 0.028 6.2E-07 47.2 0.7 68 5-72 291-366 (467)
48 PF09237 GAGA: GAGA factor; I 93.5 0.015 3.3E-07 35.2 -0.6 30 54-83 19-48 (54)
49 PF12874 zf-met: Zinc-finger o 93.2 0.019 4.2E-07 29.1 -0.5 22 60-81 1-22 (25)
50 PF12171 zf-C2H2_jaz: Zinc-fin 92.4 0.026 5.7E-07 29.4 -0.6 22 60-81 2-23 (27)
51 smart00451 ZnF_U1 U1-like zinc 91.5 0.17 3.6E-06 27.7 2.0 23 31-53 3-25 (35)
52 cd00350 rubredoxin_like Rubred 89.4 0.25 5.4E-06 27.1 1.5 24 32-67 2-25 (33)
53 KOG1146 Homeobox protein [Gene 89.2 0.22 4.7E-06 48.4 1.9 56 26-81 460-540 (1406)
54 PF06524 NOA36: NOA36 protein; 88.8 2 4.4E-05 34.9 6.8 76 26-102 137-226 (314)
55 smart00451 ZnF_U1 U1-like zinc 87.7 0.27 5.8E-06 26.8 0.9 23 59-81 3-25 (35)
56 PRK04860 hypothetical protein; 84.6 0.66 1.4E-05 35.0 1.9 33 58-94 118-152 (160)
57 KOG2186 Cell growth-regulating 83.8 0.75 1.6E-05 37.1 2.0 47 31-80 3-49 (276)
58 PF09986 DUF2225: Uncharacteri 83.7 0.33 7.1E-06 38.4 -0.1 44 29-72 3-61 (214)
59 KOG4173 Alpha-SNAP protein [In 82.4 0.38 8.2E-06 37.7 -0.2 70 9-81 87-168 (253)
60 smart00531 TFIIE Transcription 81.4 1.7 3.7E-05 32.2 3.0 36 29-68 97-132 (147)
61 TIGR00373 conserved hypothetic 81.0 2 4.2E-05 32.3 3.3 33 27-68 105-137 (158)
62 PRK00464 nrdR transcriptional 80.5 0.36 7.9E-06 36.2 -0.8 14 60-73 29-42 (154)
63 COG5236 Uncharacterized conser 80.2 0.79 1.7E-05 38.7 1.0 73 18-92 168-254 (493)
64 COG1592 Rubrerythrin [Energy p 80.0 1.2 2.7E-05 33.8 1.8 12 83-94 147-158 (166)
65 cd00729 rubredoxin_SM Rubredox 79.4 1.3 2.7E-05 24.5 1.3 8 32-39 3-10 (34)
66 PRK06266 transcription initiat 78.5 2.2 4.7E-05 32.8 2.8 32 29-69 115-146 (178)
67 KOG2893 Zn finger protein [Gen 73.4 1.1 2.5E-05 35.9 0.1 46 5-54 12-58 (341)
68 KOG2785 C2H2-type Zn-finger pr 73.1 3.4 7.3E-05 35.3 2.8 52 30-81 165-242 (390)
69 PF02892 zf-BED: BED zinc fing 70.8 4 8.6E-05 23.5 2.0 24 28-51 13-40 (45)
70 TIGR00373 conserved hypothetic 70.0 3.7 8.1E-05 30.8 2.2 33 55-94 105-137 (158)
71 PF13719 zinc_ribbon_5: zinc-r 69.9 3 6.6E-05 23.3 1.3 33 33-70 4-36 (37)
72 COG1592 Rubrerythrin [Energy p 69.5 2.7 5.9E-05 31.9 1.4 23 31-66 134-156 (166)
73 TIGR02605 CxxC_CxxC_SSSS putat 69.5 1.4 3.1E-05 26.3 -0.1 11 32-42 6-16 (52)
74 PF09845 DUF2072: Zn-ribbon co 69.2 2.9 6.3E-05 30.5 1.4 12 60-71 2-13 (131)
75 smart00834 CxxC_CXXC_SSSS Puta 68.0 1.6 3.5E-05 24.5 -0.1 29 32-67 6-34 (41)
76 TIGR02098 MJ0042_CXXC MJ0042 f 67.7 3.1 6.7E-05 23.1 1.1 33 32-69 3-35 (38)
77 smart00614 ZnF_BED BED zinc fi 67.5 4.4 9.4E-05 24.1 1.8 23 30-52 17-44 (50)
78 smart00531 TFIIE Transcription 65.8 3.6 7.8E-05 30.4 1.4 37 56-94 96-132 (147)
79 PF13717 zinc_ribbon_4: zinc-r 65.0 5.3 0.00011 22.2 1.7 33 32-69 3-35 (36)
80 COG4049 Uncharacterized protei 65.0 3 6.6E-05 25.8 0.7 30 24-53 10-39 (65)
81 PRK06266 transcription initiat 64.1 4.5 9.7E-05 31.0 1.7 33 57-96 115-147 (178)
82 KOG1146 Homeobox protein [Gene 63.3 1.6 3.4E-05 42.9 -1.2 49 33-81 438-487 (1406)
83 PF05443 ROS_MUCR: ROS/MUCR tr 63.1 4.3 9.3E-05 29.7 1.3 28 29-59 70-97 (132)
84 PF09723 Zn-ribbon_8: Zinc rib 62.9 3 6.4E-05 24.0 0.4 29 32-67 6-34 (42)
85 PF09538 FYDLN_acid: Protein o 61.6 5.2 0.00011 28.2 1.5 26 60-94 10-35 (108)
86 COG0068 HypF Hydrogenase matur 61.3 2 4.2E-05 39.7 -0.9 58 33-95 125-183 (750)
87 PF04959 ARS2: Arsenite-resist 61.3 5.8 0.00013 31.4 1.9 27 27-53 73-99 (214)
88 smart00659 RPOLCX RNA polymera 59.7 6.8 0.00015 22.9 1.5 11 32-42 3-13 (44)
89 COG1996 RPC10 DNA-directed RNA 59.6 5.6 0.00012 23.9 1.2 12 30-41 5-16 (49)
90 PRK00398 rpoP DNA-directed RNA 58.9 2.8 6E-05 24.5 -0.3 11 31-41 3-13 (46)
91 COG1997 RPL43A Ribosomal prote 58.8 3.8 8.2E-05 27.7 0.4 32 30-71 34-65 (89)
92 PRK09678 DNA-binding transcrip 58.5 2.7 5.7E-05 27.5 -0.4 13 58-70 26-40 (72)
93 COG2888 Predicted Zn-ribbon RN 58.4 8.1 0.00018 24.2 1.8 33 59-94 27-59 (61)
94 TIGR00622 ssl1 transcription f 58.0 11 0.00024 26.8 2.6 19 31-49 15-33 (112)
95 KOG2593 Transcription initiati 54.9 10 0.00023 33.0 2.5 40 25-67 122-161 (436)
96 KOG4167 Predicted DNA-binding 51.6 3.2 6.9E-05 38.5 -1.2 26 31-56 792-817 (907)
97 COG3091 SprT Zn-dependent meta 51.2 9 0.00019 28.7 1.3 35 28-67 114-148 (156)
98 PF15269 zf-C2H2_7: Zinc-finge 50.7 8 0.00017 22.8 0.8 22 60-81 21-42 (54)
99 KOG4124 Putative transcription 48.5 4.2 9.1E-05 34.5 -0.8 24 29-52 347-372 (442)
100 PRK12860 transcriptional activ 48.2 15 0.00032 28.6 2.1 50 39-95 115-164 (189)
101 COG3364 Zn-ribbon containing p 47.9 12 0.00026 26.1 1.5 13 31-43 2-14 (112)
102 KOG0978 E3 ubiquitin ligase in 47.0 9.6 0.00021 35.4 1.1 46 32-77 644-696 (698)
103 KOG2785 C2H2-type Zn-finger pr 46.1 22 0.00047 30.6 3.0 46 8-53 171-242 (390)
104 smart00734 ZnF_Rad18 Rad18-lik 46.0 16 0.00036 18.7 1.5 18 61-79 3-20 (26)
105 TIGR02300 FYDLN_acid conserved 45.5 14 0.00031 26.8 1.6 25 61-94 11-35 (129)
106 KOG2482 Predicted C2H2-type Zn 44.9 16 0.00034 31.1 1.9 23 31-53 195-217 (423)
107 PRK14890 putative Zn-ribbon RN 44.5 19 0.00041 22.5 1.8 34 58-94 24-57 (59)
108 KOG2593 Transcription initiati 42.3 17 0.00037 31.7 1.9 38 55-93 124-161 (436)
109 KOG0782 Predicted diacylglycer 42.3 3.1 6.8E-05 37.6 -2.6 53 15-73 237-290 (1004)
110 PTZ00255 60S ribosomal protein 41.3 6 0.00013 26.9 -0.8 31 31-71 36-66 (90)
111 KOG3408 U1-like Zn-finger-cont 39.8 17 0.00036 26.2 1.2 26 28-53 54-79 (129)
112 TIGR00244 transcriptional regu 39.4 7.6 0.00016 28.9 -0.6 13 60-72 29-41 (147)
113 COG1327 Predicted transcriptio 38.7 8.8 0.00019 28.7 -0.3 13 60-72 29-41 (156)
114 TIGR00280 L37a ribosomal prote 38.5 5.7 0.00012 27.1 -1.3 30 31-70 35-64 (91)
115 smart00064 FYVE Protein presen 37.6 25 0.00054 21.9 1.7 28 32-71 11-38 (68)
116 cd00065 FYVE FYVE domain; Zinc 37.0 28 0.00061 20.7 1.8 27 33-71 4-30 (57)
117 KOG4173 Alpha-SNAP protein [In 37.0 13 0.00029 29.3 0.4 47 30-80 78-127 (253)
118 PF12013 DUF3505: Protein of u 36.5 31 0.00066 23.9 2.2 23 32-54 81-107 (109)
119 COG2331 Uncharacterized protei 36.4 7.6 0.00016 25.6 -0.9 30 31-68 12-42 (82)
120 PRK03824 hypA hydrogenase nick 35.2 18 0.00038 26.4 0.8 15 30-44 69-83 (135)
121 PF05290 Baculo_IE-1: Baculovi 35.2 24 0.00051 25.9 1.4 23 25-47 74-96 (140)
122 PRK12722 transcriptional activ 35.1 32 0.0007 26.7 2.2 50 39-95 115-164 (187)
123 COG3677 Transposase and inacti 34.9 13 0.00029 26.9 0.1 46 20-72 21-66 (129)
124 COG4957 Predicted transcriptio 34.5 20 0.00043 26.3 0.9 25 32-59 77-101 (148)
125 TIGR00100 hypA hydrogenase nic 34.5 19 0.00041 25.5 0.8 11 60-70 71-81 (115)
126 PRK12496 hypothetical protein; 34.0 35 0.00076 25.7 2.3 25 60-94 128-152 (164)
127 PF01363 FYVE: FYVE zinc finge 33.7 14 0.0003 23.2 0.0 26 33-70 11-36 (69)
128 KOG2231 Predicted E3 ubiquitin 33.6 32 0.0007 31.9 2.3 51 33-89 184-240 (669)
129 PRK03976 rpl37ae 50S ribosomal 33.3 7.2 0.00016 26.6 -1.4 30 31-70 36-65 (90)
130 PRK12380 hydrogenase nickel in 32.9 23 0.0005 25.0 1.0 10 61-70 72-81 (113)
131 PF03604 DNA_RNApol_7kD: DNA d 32.7 38 0.00083 18.3 1.7 9 59-67 17-25 (32)
132 PF04959 ARS2: Arsenite-resist 32.0 14 0.0003 29.3 -0.2 26 56-81 74-99 (214)
133 PF10263 SprT-like: SprT-like 32.0 14 0.00029 27.1 -0.3 9 60-68 124-132 (157)
134 KOG2071 mRNA cleavage and poly 31.1 28 0.00061 31.6 1.5 29 28-56 415-443 (579)
135 PF10571 UPF0547: Uncharacteri 31.0 30 0.00065 17.8 1.0 11 60-70 15-25 (26)
136 PRK14873 primosome assembly pr 30.6 35 0.00075 31.7 2.0 33 33-66 385-417 (665)
137 COG1198 PriA Primosomal protei 30.5 20 0.00043 33.7 0.4 11 84-94 474-484 (730)
138 COG1198 PriA Primosomal protei 30.2 36 0.00077 32.0 2.0 15 54-68 470-484 (730)
139 smart00154 ZnF_AN1 AN1-like Zi 29.5 29 0.00063 19.6 0.9 13 31-43 12-24 (39)
140 COG4888 Uncharacterized Zn rib 29.5 6.2 0.00013 27.4 -2.2 15 57-71 20-34 (104)
141 PRK00564 hypA hydrogenase nick 29.1 28 0.00061 24.7 1.0 10 61-70 73-82 (117)
142 PF07754 DUF1610: Domain of un 29.1 26 0.00056 17.8 0.6 9 58-66 15-23 (24)
143 COG5236 Uncharacterized conser 27.8 39 0.00084 28.9 1.7 21 33-53 222-242 (493)
144 KOG2071 mRNA cleavage and poly 27.7 39 0.00084 30.7 1.8 26 57-82 416-441 (579)
145 COG1675 TFA1 Transcription ini 27.5 77 0.0017 24.3 3.1 7 86-92 133-139 (176)
146 COG3357 Predicted transcriptio 27.4 50 0.0011 22.6 1.9 14 58-71 57-70 (97)
147 KOG3408 U1-like Zn-finger-cont 26.9 21 0.00047 25.7 0.0 23 59-81 57-79 (129)
148 KOG2482 Predicted C2H2-type Zn 26.5 37 0.00081 28.9 1.4 69 18-86 130-223 (423)
149 TIGR00595 priA primosomal prot 26.3 29 0.00064 31.0 0.8 33 33-66 215-247 (505)
150 KOG0717 Molecular chaperone (D 26.0 28 0.00061 30.8 0.6 22 60-81 293-314 (508)
151 PLN02294 cytochrome c oxidase 26.0 19 0.00041 27.5 -0.4 22 49-71 132-153 (174)
152 PF05191 ADK_lid: Adenylate ki 25.2 36 0.00078 18.9 0.7 9 33-41 3-11 (36)
153 PF01155 HypA: Hydrogenase exp 25.0 27 0.00059 24.5 0.3 13 32-44 71-83 (113)
154 PF12013 DUF3505: Protein of u 24.5 40 0.00087 23.3 1.1 24 60-83 81-108 (109)
155 PHA00626 hypothetical protein 24.2 39 0.00085 20.9 0.8 17 29-45 21-37 (59)
156 PF14311 DUF4379: Domain of un 23.8 53 0.0012 19.7 1.4 9 61-69 30-38 (55)
157 PLN03238 probable histone acet 23.7 85 0.0018 26.1 2.9 25 29-53 46-70 (290)
158 KOG0402 60S ribosomal protein 23.7 14 0.00031 24.7 -1.2 30 31-70 36-65 (92)
159 PF12760 Zn_Tnp_IS1595: Transp 23.6 21 0.00045 20.8 -0.5 11 57-67 35-45 (46)
160 cd00924 Cyt_c_Oxidase_Vb Cytoc 23.4 23 0.0005 24.4 -0.3 22 49-71 70-91 (97)
161 KOG2231 Predicted E3 ubiquitin 23.2 70 0.0015 29.7 2.6 73 9-89 188-275 (669)
162 PF01428 zf-AN1: AN1-like Zinc 23.0 32 0.00068 19.7 0.2 14 30-43 12-25 (43)
163 KOG1280 Uncharacterized conser 23.0 83 0.0018 26.9 2.8 38 29-66 77-116 (381)
164 PRK03681 hypA hydrogenase nick 22.8 31 0.00068 24.3 0.3 9 61-69 72-80 (114)
165 PF02176 zf-TRAF: TRAF-type zi 22.6 56 0.0012 19.5 1.4 35 29-64 7-43 (60)
166 smart00731 SprT SprT homologue 22.4 40 0.00088 24.6 0.8 11 59-69 112-122 (146)
167 COG1571 Predicted DNA-binding 21.6 60 0.0013 28.4 1.8 13 59-71 367-379 (421)
168 PF15135 UPF0515: Uncharacteri 21.6 1E+02 0.0022 25.2 2.9 25 17-41 93-122 (278)
169 PF07282 OrfB_Zn_ribbon: Putat 21.6 47 0.001 20.7 0.9 12 57-68 44-55 (69)
170 PF08790 zf-LYAR: LYAR-type C2 21.3 23 0.00049 18.7 -0.5 10 32-41 1-10 (28)
171 TIGR00143 hypF [NiFe] hydrogen 20.6 17 0.00037 34.0 -1.9 55 34-93 93-148 (711)
172 PF13824 zf-Mss51: Zinc-finger 20.6 84 0.0018 19.3 1.8 11 57-67 12-22 (55)
No 1
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.80 E-value=1.2e-20 Score=150.23 Aligned_cols=96 Identities=15% Similarity=0.224 Sum_probs=83.7
Q ss_pred CCCCCCCCCchhHHHHhhhcCCCcceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCCCchhHHHHHh--cCC
Q 037433 7 QVGSDHSSSDENEVKELDTSSAKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFITSNPMLTHEDY--MNP 84 (181)
Q Consensus 7 ~~c~~sf~~~s~L~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~--~~~ 84 (181)
..|+|.+..-..|..|+++|+ -+++|.+|||.|.+.--|.+|+|+|||||||.|+.|+|+|+..++|+.||++ +.+
T Consensus 165 ~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K 242 (279)
T KOG2462|consen 165 KYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVK 242 (279)
T ss_pred CCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCc
Confidence 467777777778888888887 6899999999999999999999999999999999999999999999999999 789
Q ss_pred CCCCCCCCCCCCCCCchhhh
Q 037433 85 RYIAPISSDTSRHSPVFESQ 104 (181)
Q Consensus 85 ~~~c~~~~~~~~~~~~~~~~ 104 (181)
+|.|+.|........-|+.|
T Consensus 243 ~~qC~~C~KsFsl~SyLnKH 262 (279)
T KOG2462|consen 243 KHQCPRCGKSFALKSYLNKH 262 (279)
T ss_pred cccCcchhhHHHHHHHHHHh
Confidence 99999999776544444443
No 2
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.75 E-value=2.4e-19 Score=142.81 Aligned_cols=77 Identities=17% Similarity=0.299 Sum_probs=74.1
Q ss_pred CCCCCCCCCchhHHHHhhhcCCCcceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCCCchhHHHHHhcC
Q 037433 7 QVGSDHSSSDENEVKELDTSSAKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFITSNPMLTHEDYMN 83 (181)
Q Consensus 7 ~~c~~sf~~~s~L~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~~~ 83 (181)
+.|+|.|++-.-|..|+|+|||||||.|..|+|+|..+++|+.||++|.+.|+|+|..|+|+|+..+.|.+|....-
T Consensus 191 ~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~C 267 (279)
T KOG2462|consen 191 GICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSESAC 267 (279)
T ss_pred ccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhhcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999998653
No 3
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.57 E-value=2.3e-16 Score=120.94 Aligned_cols=101 Identities=19% Similarity=0.234 Sum_probs=88.8
Q ss_pred CCCCCCCCCchhHHHHhhhcCCCcceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCCCchhHHHHHh-----
Q 037433 7 QVGSDHSSSDENEVKELDTSSAKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFITSNPMLTHEDY----- 81 (181)
Q Consensus 7 ~~c~~sf~~~s~L~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~----- 81 (181)
.+|+|.|.-..-|.+|++.|...|.|.|.+|||+|...-.|++|+++|||.+||+|..|+|+|.+..+|..|.+.
T Consensus 121 rvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~ 200 (267)
T KOG3576|consen 121 RVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQ 200 (267)
T ss_pred ehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCch
Confidence 468999999999999999999999999999999999999999999999999999999999999999999888763
Q ss_pred --------cCCCCCCCCCCCCCCCCCchhhhccc
Q 037433 82 --------MNPRYIAPISSDTSRHSPVFESQRNY 107 (181)
Q Consensus 82 --------~~~~~~c~~~~~~~~~~~~~~~~~~~ 107 (181)
..+-|.|..|++.....-..-.|++.
T Consensus 201 ~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~ 234 (267)
T KOG3576|consen 201 HQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKL 234 (267)
T ss_pred HHHHHHHhhhheeeecccCCCCCChhHHHHHHHh
Confidence 35678899999887655555555543
No 4
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.53 E-value=1.2e-15 Score=134.52 Aligned_cols=74 Identities=18% Similarity=0.318 Sum_probs=64.6
Q ss_pred CCCCCCCCCchhHHHHhhhcCCCcceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCCCchhHHHHH
Q 037433 7 QVGSDHSSSDENEVKELDTSSAKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFITSNPMLTHED 80 (181)
Q Consensus 7 ~~c~~sf~~~s~L~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~ 80 (181)
++|.|.|.-.+.|.+|.--|+|.|||.|.+|.|+|+.+.+|..|+|.|.|||||+|..|+|+|+...++..||.
T Consensus 898 DqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMN 971 (1007)
T KOG3623|consen 898 DQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMN 971 (1007)
T ss_pred HHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhc
Confidence 57888888888888888888888888888888888888888888888888888888888888888888888885
No 5
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.30 E-value=5.3e-13 Score=118.04 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=79.2
Q ss_pred CCCcceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCCCchhHHHHHh--cCCCCCCCCCCCCCCCCCchhhh
Q 037433 27 SAKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFITSNPMLTHEDY--MNPRYIAPISSDTSRHSPVFESQ 104 (181)
Q Consensus 27 ~~~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~--~~~~~~c~~~~~~~~~~~~~~~~ 104 (181)
+..-.|.|..|.|+|...+.|.+|..-|+|.|||+|.+|.|+|..+.+|..|+|. +++||+|..|........+..-|
T Consensus 890 te~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQH 969 (1007)
T KOG3623|consen 890 TEDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQH 969 (1007)
T ss_pred CccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhh
Confidence 3455899999999999999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred cccccccC
Q 037433 105 RNYLRYYQ 112 (181)
Q Consensus 105 ~~~~~~~~ 112 (181)
||....|-
T Consensus 970 MNHRYSYC 977 (1007)
T KOG3623|consen 970 MNHRYSYC 977 (1007)
T ss_pred hccchhcc
Confidence 99865443
No 6
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.22 E-value=1.6e-12 Score=107.11 Aligned_cols=100 Identities=15% Similarity=0.204 Sum_probs=90.0
Q ss_pred CCCCCCCCchhHHHHhhhcCCCcceeCCcccccCCChHHHHHhHHhhc--CCCCccCCCCCCCCCCCchhHHHHHhcCCC
Q 037433 8 VGSDHSSSDENEVKELDTSSAKRSYECTFCKRGFTNAQALGGHMNIHR--KDRAKAKQTTGPSFITSNPMLTHEDYMNPR 85 (181)
Q Consensus 8 ~c~~sf~~~s~L~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~--gekp~~C~~C~k~F~~~~~L~~H~~~~~~~ 85 (181)
.|.+.+..+.+|..|+++|+++|...|.+||..|.+...|-.|.+..+ ...+|.|..|.|.|.+...|+.|+..|..-
T Consensus 184 ~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ 263 (467)
T KOG3608|consen 184 MCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNC 263 (467)
T ss_pred hhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhc
Confidence 488899999999999999999999999999999999999999988654 457899999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCchhhhccc
Q 037433 86 YIAPISSDTSRHSPVFESQRNY 107 (181)
Q Consensus 86 ~~c~~~~~~~~~~~~~~~~~~~ 107 (181)
|+||+|++......++..|+.|
T Consensus 264 ykCplCdmtc~~~ssL~~H~r~ 285 (467)
T KOG3608|consen 264 YKCPLCDMTCSSASSLTTHIRY 285 (467)
T ss_pred ccccccccCCCChHHHHHHHHh
Confidence 9999999888776677666654
No 7
>PHA02768 hypothetical protein; Provisional
Probab=99.10 E-value=4.8e-11 Score=73.59 Aligned_cols=44 Identities=14% Similarity=0.332 Sum_probs=40.4
Q ss_pred ceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCCCchhH
Q 037433 31 SYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFITSNPML 76 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~ 76 (181)
-|+|..||+.|+..++|..||++|+ ++|+|..|++.|.+.+.|.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence 4899999999999999999999999 7999999999999887653
No 8
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.04 E-value=4.9e-11 Score=107.12 Aligned_cols=51 Identities=24% Similarity=0.389 Sum_probs=29.8
Q ss_pred ceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCCCchhHHHHHh
Q 037433 31 SYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFITSNPMLTHEDY 81 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~ 81 (181)
|-.|.+|.|..+-..+|+-|.++|+|||||+|.+||++|.++.+|+.||-+
T Consensus 605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~v 655 (958)
T KOG1074|consen 605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSV 655 (958)
T ss_pred ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccc
Confidence 345555555555555566565556666666666666666655555555554
No 9
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.02 E-value=1.8e-10 Score=103.62 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=69.8
Q ss_pred CCCCCCCchhHHHHhhhcCCCcceeCCcccccCCChHHHHHhHHhhcCCC----CccCC---CCCCCCCCCchhHHHHHh
Q 037433 9 GSDHSSSDENEVKELDTSSAKRSYECTFCKRGFTNAQALGGHMNIHRKDR----AKAKQ---TTGPSFITSNPMLTHEDY 81 (181)
Q Consensus 9 c~~sf~~~s~L~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~gek----p~~C~---~C~k~F~~~~~L~~H~~~ 81 (181)
|-+-.+..+.|..|+++|+|+|||+|.+||++|+++.+|+.||-+|...- ++.|+ +|-+.|...-.|..|+++
T Consensus 611 C~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~lpQhIri 690 (958)
T KOG1074|consen 611 CLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTLPQHIRI 690 (958)
T ss_pred eeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccccccceEEe
Confidence 56667778899999999999999999999999999999999999998764 46798 999999999999999999
Q ss_pred cCCCC
Q 037433 82 MNPRY 86 (181)
Q Consensus 82 ~~~~~ 86 (181)
|....
T Consensus 691 H~~~~ 695 (958)
T KOG1074|consen 691 HLGGQ 695 (958)
T ss_pred ecCCC
Confidence 77554
No 10
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.00 E-value=3.7e-11 Score=92.48 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=74.0
Q ss_pred CCcceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCCCchhHHHHHh--cCCCCCCCCCCCCCCCCCchhhhc
Q 037433 28 AKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFITSNPMLTHEDY--MNPRYIAPISSDTSRHSPVFESQR 105 (181)
Q Consensus 28 ~~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~--~~~~~~c~~~~~~~~~~~~~~~~~ 105 (181)
+...|.|.+|+|.|.....|.+|++.|...|.|.|..|||.|...-.|++|+|+ +..||+|..|+.....-.++++|.
T Consensus 114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl 193 (267)
T KOG3576|consen 114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL 193 (267)
T ss_pred CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence 355799999999999999999999999999999999999999999999999998 789999999999988888999887
Q ss_pred cc
Q 037433 106 NY 107 (181)
Q Consensus 106 ~~ 107 (181)
..
T Consensus 194 ~k 195 (267)
T KOG3576|consen 194 KK 195 (267)
T ss_pred HH
Confidence 53
No 11
>PHA00733 hypothetical protein
Probab=98.90 E-value=2e-09 Score=78.51 Aligned_cols=61 Identities=23% Similarity=0.377 Sum_probs=43.5
Q ss_pred HHHHhhhcCCCcceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCCCchhHHHHHhc
Q 037433 19 EVKELDTSSAKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFITSNPMLTHEDYM 82 (181)
Q Consensus 19 L~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~~ 82 (181)
|.+|+.++ +.+||.|..|++.|.....|..|+++| +++|.|..|++.|.....|..|+...
T Consensus 62 l~~~~~~~-~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~ 122 (128)
T PHA00733 62 LYKLLTSK-AVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKK 122 (128)
T ss_pred HHhhcccC-CCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHh
Confidence 33443333 367788888888888888888887765 35678888888888888888877653
No 12
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.73 E-value=4e-09 Score=55.68 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=14.2
Q ss_pred HHHhHHhhcCCCCccCCCCCCCCC
Q 037433 47 LGGHMNIHRKDRAKAKQTTGPSFI 70 (181)
Q Consensus 47 L~~H~~~H~gekp~~C~~C~k~F~ 70 (181)
|.+|+++|+++|||.|+.|+++|.
T Consensus 2 l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHSSSSSEEESSSSEEES
T ss_pred HHHHhhhcCCCCCCCCCCCcCeeC
Confidence 555666666666666666665554
No 13
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.69 E-value=2.7e-08 Score=87.99 Aligned_cols=83 Identities=11% Similarity=0.063 Sum_probs=70.1
Q ss_pred CCCCCCCCCchhHHHHhhhcCCCcceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCC----------CchhH
Q 037433 7 QVGSDHSSSDENEVKELDTSSAKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFIT----------SNPML 76 (181)
Q Consensus 7 ~~c~~sf~~~s~L~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~----------~~~L~ 76 (181)
+.|+++|. ...|..|+.+++ +++.|. |++.+ ....|..|+.+|..+|++.|..|++.|.. ...|.
T Consensus 457 ~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt 531 (567)
T PLN03086 457 EKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMS 531 (567)
T ss_pred CCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHH
Confidence 56888885 678999999985 789999 99765 66889999999999999999999999852 34789
Q ss_pred HHHHh-cCCCCCCCCCCCC
Q 037433 77 THEDY-MNPRYIAPISSDT 94 (181)
Q Consensus 77 ~H~~~-~~~~~~c~~~~~~ 94 (181)
.|+.+ +.+.+.|..|+..
T Consensus 532 ~HE~~CG~rt~~C~~Cgk~ 550 (567)
T PLN03086 532 EHESICGSRTAPCDSCGRS 550 (567)
T ss_pred HHHHhcCCcceEccccCCe
Confidence 99998 7888899999854
No 14
>PHA00733 hypothetical protein
Probab=98.66 E-value=9.6e-09 Score=74.89 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=66.2
Q ss_pred hHHHHhhhcCCCcceeCCcccccCCChHHHHHh--HH---hhcCCCCccCCCCCCCCCCCchhHHHHHhcCCCCCCCCCC
Q 037433 18 NEVKELDTSSAKRSYECTFCKRGFTNAQALGGH--MN---IHRKDRAKAKQTTGPSFITSNPMLTHEDYMNPRYIAPISS 92 (181)
Q Consensus 18 ~L~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H--~~---~H~gekp~~C~~C~k~F~~~~~L~~H~~~~~~~~~c~~~~ 92 (181)
.|.++-......+++.|.+|++.|.....|..+ +. .+.+.+||.|..|++.|.....|..|++++..+|.|+.|+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~Cg 106 (128)
T PHA00733 27 ELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCG 106 (128)
T ss_pred HhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCC
Confidence 344443333446789999999999988887776 22 2345789999999999999999999999877789999999
Q ss_pred CCCCCCCchhhh
Q 037433 93 DTSRHSPVFESQ 104 (181)
Q Consensus 93 ~~~~~~~~~~~~ 104 (181)
........+..|
T Consensus 107 K~F~~~~sL~~H 118 (128)
T PHA00733 107 KEFRNTDSTLDH 118 (128)
T ss_pred CccCCHHHHHHH
Confidence 776554444433
No 15
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.61 E-value=1.9e-08 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.829 Sum_probs=24.0
Q ss_pred hHHHHhhhcCCCcceeCCcccccCCC
Q 037433 18 NEVKELDTSSAKRSYECTFCKRGFTN 43 (181)
Q Consensus 18 ~L~~h~~~h~~~kp~~C~~C~k~F~~ 43 (181)
+|.+|+++|++++||.|.+|++.|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 58899999999999999999999964
No 16
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=98.53 E-value=7.7e-08 Score=79.76 Aligned_cols=99 Identities=13% Similarity=0.120 Sum_probs=78.0
Q ss_pred CCCCCCCCCchhHHHHhhh-cCCCcceeCCcccccCCChHHHHHhHHhhcCCCCccCCC--CCCCCCCCchhHHHHHhc-
Q 037433 7 QVGSDHSSSDENEVKELDT-SSAKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQT--TGPSFITSNPMLTHEDYM- 82 (181)
Q Consensus 7 ~~c~~sf~~~s~L~~h~~~-h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~--C~k~F~~~~~L~~H~~~~- 82 (181)
+.|+.+-...+.|.+|++. |...|||+|..|.+.|.+...|.+|..+|. +..|.|.. |..+|.+...+++|++.+
T Consensus 267 plCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evh 345 (467)
T KOG3608|consen 267 PLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVH 345 (467)
T ss_pred cccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhc
Confidence 5678888888888888774 677889999999999999999999988888 77788876 888888888888888762
Q ss_pred ----CCCCCCCCCCCCCCCCCchhhhcc
Q 037433 83 ----NPRYIAPISSDTSRHSPVFESQRN 106 (181)
Q Consensus 83 ----~~~~~c~~~~~~~~~~~~~~~~~~ 106 (181)
..+|.|-.|+.....--.+..|+.
T Consensus 346 Eg~np~~Y~CH~Cdr~ft~G~~L~~HL~ 373 (467)
T KOG3608|consen 346 EGNNPILYACHCCDRFFTSGKSLSAHLM 373 (467)
T ss_pred cCCCCCceeeecchhhhccchhHHHHHH
Confidence 456788888866555445665553
No 17
>PHA02768 hypothetical protein; Provisional
Probab=98.40 E-value=1.9e-07 Score=57.69 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=34.6
Q ss_pred CccCCCCCCCCCCCchhHHHHHhcCCCCCCCCCCCCCC
Q 037433 59 AKAKQTTGPSFITSNPMLTHEDYMNPRYIAPISSDTSR 96 (181)
Q Consensus 59 p~~C~~C~k~F~~~~~L~~H~~~~~~~~~c~~~~~~~~ 96 (181)
-|.|+.||+.|+..++|..|+++|.++|.|..|.....
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f~ 42 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRISL 42 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcCCcccCCcccceec
Confidence 47999999999999999999999999999999986554
No 18
>PHA00616 hypothetical protein
Probab=98.26 E-value=4e-07 Score=53.62 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=31.5
Q ss_pred ceeCCcccccCCChHHHHHhHHhhcCCCCccCCC
Q 037433 31 SYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQT 64 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~ 64 (181)
||.|..||+.|...+.|..|++.|+|++++.|..
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence 6899999999999999999999999999998863
No 19
>PHA00732 hypothetical protein
Probab=98.25 E-value=7.5e-07 Score=59.51 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=38.4
Q ss_pred ceeCCcccccCCChHHHHHhHHh-hcCCCCccCCCCCCCCCCCchhHHHHHh
Q 037433 31 SYECTFCKRGFTNAQALGGHMNI-HRKDRAKAKQTTGPSFITSNPMLTHEDY 81 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~-H~gekp~~C~~C~k~F~~~~~L~~H~~~ 81 (181)
||.|..|++.|.....|..|++. |+ ++.|..|++.|. .+..|..+
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~ 46 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS 46 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence 58899999999999999999984 66 368999999998 46778765
No 20
>PLN03086 PRLI-interacting factor K; Provisional
Probab=97.96 E-value=1.1e-05 Score=71.56 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=59.2
Q ss_pred CCCCCCCchhHHHHhhhcCCCcceeCCcccccCC----------ChHHHHHhHHhhcCCCCccCCCCCCCCCCCchhHHH
Q 037433 9 GSDHSSSDENEVKELDTSSAKRSYECTFCKRGFT----------NAQALGGHMNIHRKDRAKAKQTTGPSFITSNPMLTH 78 (181)
Q Consensus 9 c~~sf~~~s~L~~h~~~h~~~kp~~C~~C~k~F~----------~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H 78 (181)
|++.+ ....|..|+.+|.+++++.|.+|++.|. ....|..|..+. |.+++.|..|++.|.... +..|
T Consensus 483 Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlrd-m~~H 559 (567)
T PLN03086 483 CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLKE-MDIH 559 (567)
T ss_pred CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCeeeehh-HHHH
Confidence 78755 5689999999999999999999999985 245899999885 999999999999988764 4777
Q ss_pred HHh
Q 037433 79 EDY 81 (181)
Q Consensus 79 ~~~ 81 (181)
+..
T Consensus 560 ~~~ 562 (567)
T PLN03086 560 QIA 562 (567)
T ss_pred HHH
Confidence 654
No 21
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.72 E-value=1.2e-05 Score=66.17 Aligned_cols=53 Identities=23% Similarity=0.435 Sum_probs=44.0
Q ss_pred CcceeCCc--ccccCCChHHHHHhHHh-h------------------cCCCCccCCCCCCCCCCCchhHHHHHh
Q 037433 29 KRSYECTF--CKRGFTNAQALGGHMNI-H------------------RKDRAKAKQTTGPSFITSNPMLTHEDY 81 (181)
Q Consensus 29 ~kp~~C~~--C~k~F~~~~~L~~H~~~-H------------------~gekp~~C~~C~k~F~~~~~L~~H~~~ 81 (181)
+|||+|.+ |.|.|++.--|+-|+.- | ...|||+|++|+|++.....|+.|+..
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~H 420 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKH 420 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecccc
Confidence 59999987 99999999999999752 3 134899999999999998888888753
No 22
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.71 E-value=2.3e-05 Score=39.58 Aligned_cols=23 Identities=35% Similarity=0.871 Sum_probs=18.4
Q ss_pred eeCCcccccCCChHHHHHhHHhh
Q 037433 32 YECTFCKRGFTNAQALGGHMNIH 54 (181)
Q Consensus 32 ~~C~~C~k~F~~~~~L~~H~~~H 54 (181)
|.|..|++.|.....|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 67888888888888888888764
No 23
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.69 E-value=7.2e-05 Score=46.19 Aligned_cols=50 Identities=18% Similarity=0.444 Sum_probs=38.8
Q ss_pred ceeCCcccccCCChHHHHHhHHh-hcCC-CCccCCCCCCCCCCCchhHHHHHhcC
Q 037433 31 SYECTFCKRGFTNAQALGGHMNI-HRKD-RAKAKQTTGPSFITSNPMLTHEDYMN 83 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~-H~ge-kp~~C~~C~k~F~~~~~L~~H~~~~~ 83 (181)
.|.|++|++. .....|..|... |..+ +.+.|++|...+. .+|..|+...+
T Consensus 2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence 4899999995 456789999765 7665 5789999998655 48889988643
No 24
>PHA00732 hypothetical protein
Probab=97.53 E-value=6.3e-05 Score=50.22 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=33.1
Q ss_pred CccCCCCCCCCCCCchhHHHHHhcCCCCCCCCCCCCCC
Q 037433 59 AKAKQTTGPSFITSNPMLTHEDYMNPRYIAPISSDTSR 96 (181)
Q Consensus 59 p~~C~~C~k~F~~~~~L~~H~~~~~~~~~c~~~~~~~~ 96 (181)
||.|..|++.|.+...|+.|++.++.++.|+.|+....
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~~~C~~CgKsF~ 38 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHTLTKCPVCNKSYR 38 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccCCCccCCCCCEeC
Confidence 68999999999999999999996556788999987664
No 25
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=97.49 E-value=2.2e-05 Score=66.69 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=58.3
Q ss_pred CCCCCCCchhHHHHhhhcCCCcceeCCcccccCCChHHHHHhHHhhc--------CCC----------------------
Q 037433 9 GSDHSSSDENEVKELDTSSAKRSYECTFCKRGFTNAQALGGHMNIHR--------KDR---------------------- 58 (181)
Q Consensus 9 c~~sf~~~s~L~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~--------gek---------------------- 58 (181)
|..-|.+.=.|.+|.-...-.--|+|..|+|.|.-..+|..|.|.|. +..
T Consensus 273 CK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~ds 352 (500)
T KOG3993|consen 273 CKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDS 352 (500)
T ss_pred HHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcc
Confidence 33344444567788665555556999999999999999999999884 212
Q ss_pred ---CccCCCCCCCCCCCchhHHHHHhcCC
Q 037433 59 ---AKAKQTTGPSFITSNPMLTHEDYMNP 84 (181)
Q Consensus 59 ---p~~C~~C~k~F~~~~~L~~H~~~~~~ 84 (181)
-|.|..|+|.|.+...|++|+-+|+.
T Consensus 353 s~gi~~C~~C~KkFrRqAYLrKHqlthq~ 381 (500)
T KOG3993|consen 353 SSGIFSCHTCGKKFRRQAYLRKHQLTHQR 381 (500)
T ss_pred cCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence 37899999999999999999777543
No 26
>PHA00616 hypothetical protein
Probab=97.29 E-value=6.8e-05 Score=44.18 Aligned_cols=31 Identities=10% Similarity=0.009 Sum_probs=25.9
Q ss_pred CccCCCCCCCCCCCchhHHHHHh--cCCCCCCC
Q 037433 59 AKAKQTTGPSFITSNPMLTHEDY--MNPRYIAP 89 (181)
Q Consensus 59 p~~C~~C~k~F~~~~~L~~H~~~--~~~~~~c~ 89 (181)
||+|..||+.|...+.|..|++. ++.++.|+
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence 68999999999999999999997 44555443
No 27
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.25 E-value=0.00017 Score=37.79 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=20.6
Q ss_pred ceeCCcccccCCChHHHHHhHHhhc
Q 037433 31 SYECTFCKRGFTNAQALGGHMNIHR 55 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~H~ 55 (181)
+|.|..|++.|....+|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 5788888888888888888887764
No 28
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.21 E-value=6.9e-05 Score=37.78 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=20.7
Q ss_pred ccCCCCCCCCCCCchhHHHHHh
Q 037433 60 KAKQTTGPSFITSNPMLTHEDY 81 (181)
Q Consensus 60 ~~C~~C~k~F~~~~~L~~H~~~ 81 (181)
|.|+.|++.|.....|..|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 6899999999999999999986
No 29
>PRK04860 hypothetical protein; Provisional
Probab=97.16 E-value=0.00024 Score=53.71 Aligned_cols=40 Identities=15% Similarity=0.397 Sum_probs=34.3
Q ss_pred cceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCCCc
Q 037433 30 RSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFITSN 73 (181)
Q Consensus 30 kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~ 73 (181)
-+|.|. |++ ....+.+|.++|+++++|.|..|++.|....
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG 157 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence 479998 987 6777899999999999999999999887543
No 30
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.10 E-value=0.00041 Score=34.76 Aligned_cols=23 Identities=30% Similarity=0.846 Sum_probs=15.5
Q ss_pred eeCCcccccCCChHHHHHhHHhh
Q 037433 32 YECTFCKRGFTNAQALGGHMNIH 54 (181)
Q Consensus 32 ~~C~~C~k~F~~~~~L~~H~~~H 54 (181)
|.|.+|++.|.....|..|+++|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 56777777777777777777664
No 31
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=96.77 E-value=0.00038 Score=34.90 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=19.7
Q ss_pred ccCCCCCCCCCCCchhHHHHHhcC
Q 037433 60 KAKQTTGPSFITSNPMLTHEDYMN 83 (181)
Q Consensus 60 ~~C~~C~k~F~~~~~L~~H~~~~~ 83 (181)
|.|..|++.|.+...|+.|+++++
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 689999999999999999998753
No 32
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.68 E-value=0.0017 Score=32.85 Aligned_cols=24 Identities=38% Similarity=0.746 Sum_probs=16.3
Q ss_pred eeCCcccccCCChHHHHHhHHhhc
Q 037433 32 YECTFCKRGFTNAQALGGHMNIHR 55 (181)
Q Consensus 32 ~~C~~C~k~F~~~~~L~~H~~~H~ 55 (181)
|.|..|++.|.....|..|+++|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 457777777777777777776554
No 33
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.67 E-value=0.0011 Score=54.85 Aligned_cols=43 Identities=7% Similarity=0.045 Sum_probs=36.7
Q ss_pred CCCCccCCC--CCCCCCCCchhHHHHHhcC---------------------CCCCCCCCCCCCCCC
Q 037433 56 KDRAKAKQT--TGPSFITSNPMLTHEDYMN---------------------PRYIAPISSDTSRHS 98 (181)
Q Consensus 56 gekp~~C~~--C~k~F~~~~~L~~H~~~~~---------------------~~~~c~~~~~~~~~~ 98 (181)
++|||+|++ |.|.+.....|+.|+..++ +||.|++|+..+...
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNl 411 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNL 411 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccC
Confidence 359999964 9999999999999998766 999999999776543
No 34
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=96.57 E-value=0.00085 Score=45.68 Aligned_cols=69 Identities=7% Similarity=0.033 Sum_probs=20.8
Q ss_pred CCCCCCCCchhHHHHhhhcCCCcceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCCCchhHHHHHh
Q 037433 8 VGSDHSSSDENEVKELDTSSAKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFITSNPMLTHEDY 81 (181)
Q Consensus 8 ~c~~sf~~~s~L~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~ 81 (181)
.|..+|.....|..|+....+-..- ....+.....+..+.+. .-...+.|..|++.|.+...|..|++.
T Consensus 4 ~C~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~-~~~~~~~C~~C~~~f~s~~~l~~Hm~~ 72 (100)
T PF12756_consen 4 FCDESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRK-KVKESFRCPYCNKTFRSREALQEHMRS 72 (100)
T ss_dssp --------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccc----ccccccccccccccccc-ccCCCCCCCccCCCCcCHHHHHHHHcC
Confidence 4666777777777776543332110 11111222222222221 112368999999999999999999997
No 35
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.50 E-value=0.00059 Score=35.69 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=22.7
Q ss_pred CccCCCCCCCCCCCchhHHHHHhcC
Q 037433 59 AKAKQTTGPSFITSNPMLTHEDYMN 83 (181)
Q Consensus 59 p~~C~~C~k~F~~~~~L~~H~~~~~ 83 (181)
+|.|..|++.|.....|..|++.+.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 6899999999999999999998754
No 36
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.47 E-value=0.0032 Score=38.12 Aligned_cols=33 Identities=15% Similarity=0.426 Sum_probs=21.2
Q ss_pred CCCcceeCCcccccCCChHHHHHhHHhhcCCCC
Q 037433 27 SAKRSYECTFCKRGFTNAQALGGHMNIHRKDRA 59 (181)
Q Consensus 27 ~~~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp 59 (181)
..+.|..|.+|+..+....+|++|+.++.+.||
T Consensus 20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 456778888888888888888888887776665
No 37
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=96.08 E-value=0.0013 Score=56.21 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=44.8
Q ss_pred ceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCCCchhHHHHHhcC
Q 037433 31 SYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFITSNPMLTHEDYMN 83 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~~~ 83 (181)
-|.|..|...|...-.|..|.-.-.-..-|+|+.|+|.|+...+|..|.|-|.
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHK 319 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHK 319 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccC
Confidence 39999999999999999999643333456999999999999999999988543
No 38
>smart00355 ZnF_C2H2 zinc finger.
Probab=95.93 E-value=0.0052 Score=30.92 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=20.8
Q ss_pred ccCCCCCCCCCCCchhHHHHHhc
Q 037433 60 KAKQTTGPSFITSNPMLTHEDYM 82 (181)
Q Consensus 60 ~~C~~C~k~F~~~~~L~~H~~~~ 82 (181)
|.|..|++.|.....|..|+++|
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHh
Confidence 57999999999999999999864
No 39
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.64 E-value=0.0063 Score=31.02 Aligned_cols=23 Identities=22% Similarity=0.745 Sum_probs=18.0
Q ss_pred eeCCcccccCCChHHHHHhHHhh
Q 037433 32 YECTFCKRGFTNAQALGGHMNIH 54 (181)
Q Consensus 32 ~~C~~C~k~F~~~~~L~~H~~~H 54 (181)
|.|.+|++.|.....+..|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 56888888888888888887653
No 40
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=94.65 E-value=0.014 Score=30.47 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=17.6
Q ss_pred eeCCcccccCCChHHHHHhHHh
Q 037433 32 YECTFCKRGFTNAQALGGHMNI 53 (181)
Q Consensus 32 ~~C~~C~k~F~~~~~L~~H~~~ 53 (181)
|.|..|++.|.....+..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 6688888888888888888764
No 41
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=94.63 E-value=0.053 Score=33.19 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=35.0
Q ss_pred CCCCCCCCCCCchhHHHHhhh-cCC-CcceeCCcccccCCChHHHHHhHHhhc
Q 037433 5 QKQVGSDHSSSDENEVKELDT-SSA-KRSYECTFCKRGFTNAQALGGHMNIHR 55 (181)
Q Consensus 5 ~~~~c~~sf~~~s~L~~h~~~-h~~-~kp~~C~~C~k~F~~~~~L~~H~~~H~ 55 (181)
.=|.|++. .+...|..|... |.. .+.+.|++|...++ .+|..|+.++.
T Consensus 4 ~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 4 TCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence 34789994 445789999654 554 35799999998655 48999988643
No 42
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=94.34 E-value=0.017 Score=46.14 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=30.9
Q ss_pred eCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCCCchh
Q 037433 33 ECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFITSNPM 75 (181)
Q Consensus 33 ~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L 75 (181)
.|.+|++.|.....|..|++ .|-|+|.+|-|..-+-..|
T Consensus 12 wcwycnrefddekiliqhqk----akhfkchichkkl~sgpgl 50 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQK----AKHFKCHICHKKLFSGPGL 50 (341)
T ss_pred eeeecccccchhhhhhhhhh----hccceeeeehhhhccCCCc
Confidence 59999999999999998876 4779999998765444333
No 43
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=94.34 E-value=0.043 Score=37.06 Aligned_cols=25 Identities=32% Similarity=0.822 Sum_probs=21.9
Q ss_pred ceeCCcccccCCChHHHHHhHHhhc
Q 037433 31 SYECTFCKRGFTNAQALGGHMNIHR 55 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~H~ 55 (181)
.+.|.+|++.|.....|..|++.+.
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~ 74 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKH 74 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred CCCCCccCCCCcCHHHHHHHHcCcc
Confidence 6999999999999999999999743
No 44
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=93.70 E-value=0.022 Score=47.81 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=33.4
Q ss_pred cceeCCcccccCCChHHHHHhHH--hhcCC--CCccCC--CCCCCCCCCchhHHHHHh
Q 037433 30 RSYECTFCKRGFTNAQALGGHMN--IHRKD--RAKAKQ--TTGPSFITSNPMLTHEDY 81 (181)
Q Consensus 30 kp~~C~~C~k~F~~~~~L~~H~~--~H~ge--kp~~C~--~C~k~F~~~~~L~~H~~~ 81 (181)
.++.|..|...|+....|..|.+ .|+++ +++.|. .|++.|.+...+..|..+
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 345 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILL 345 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCccc
Confidence 35666666666666666666666 56666 666666 566666666666666555
No 45
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=93.65 E-value=0.057 Score=27.14 Aligned_cols=22 Identities=27% Similarity=0.676 Sum_probs=13.9
Q ss_pred eeCCcccccCCChHHHHHhHHhh
Q 037433 32 YECTFCKRGFTNAQALGGHMNIH 54 (181)
Q Consensus 32 ~~C~~C~k~F~~~~~L~~H~~~H 54 (181)
|.|..|..... ...|..|+++|
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~ 22 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRH 22 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhh
Confidence 56777776666 67777777664
No 46
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=93.46 E-value=0.063 Score=27.62 Aligned_cols=21 Identities=38% Similarity=0.751 Sum_probs=14.9
Q ss_pred eeCCcccccCCChHHHHHhHHh
Q 037433 32 YECTFCKRGFTNAQALGGHMNI 53 (181)
Q Consensus 32 ~~C~~C~k~F~~~~~L~~H~~~ 53 (181)
..|..|++.| ....|.+|+.+
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 3578888888 66667777653
No 47
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=93.46 E-value=0.028 Score=47.18 Aligned_cols=68 Identities=16% Similarity=0.328 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCchhHHHHhh--hcCCC--cceeCC--cccccCCChHHHHHhHHhhcCCCCccCC--CCCCCCCCC
Q 037433 5 QKQVGSDHSSSDENEVKELD--TSSAK--RSYECT--FCKRGFTNAQALGGHMNIHRKDRAKAKQ--TTGPSFITS 72 (181)
Q Consensus 5 ~~~~c~~sf~~~s~L~~h~~--~h~~~--kp~~C~--~C~k~F~~~~~L~~H~~~H~gekp~~C~--~C~k~F~~~ 72 (181)
....|...|.+...+..|.+ .|+++ +++.|. .|++.|.+...+..|..+|++.+++.|. .|.+.+...
T Consensus 291 ~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (467)
T COG5048 291 KSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPL 366 (467)
T ss_pred CCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccc
Confidence 45678899999999999999 89999 999999 7999999999999999999999988774 344444433
No 48
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=93.45 E-value=0.015 Score=35.21 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=21.2
Q ss_pred hcCCCCccCCCCCCCCCCCchhHHHHHhcC
Q 037433 54 HRKDRAKAKQTTGPSFITSNPMLTHEDYMN 83 (181)
Q Consensus 54 H~gekp~~C~~C~k~F~~~~~L~~H~~~~~ 83 (181)
+..+.|-.|++|+..+.+..+|++|+.+.+
T Consensus 19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H 48 (54)
T PF09237_consen 19 SQSEQPATCPICGAVIRQSRNLRRHLEIRH 48 (54)
T ss_dssp CTTS--EE-TTT--EESSHHHHHHHHHHHT
T ss_pred hccCCCCCCCcchhhccchhhHHHHHHHHh
Confidence 345688899999999999999999998743
No 49
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=93.16 E-value=0.019 Score=29.13 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=20.0
Q ss_pred ccCCCCCCCCCCCchhHHHHHh
Q 037433 60 KAKQTTGPSFITSNPMLTHEDY 81 (181)
Q Consensus 60 ~~C~~C~k~F~~~~~L~~H~~~ 81 (181)
|.|.+|.+.|.....|+.|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 6799999999999999999874
No 50
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=92.42 E-value=0.026 Score=29.38 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=20.0
Q ss_pred ccCCCCCCCCCCCchhHHHHHh
Q 037433 60 KAKQTTGPSFITSNPMLTHEDY 81 (181)
Q Consensus 60 ~~C~~C~k~F~~~~~L~~H~~~ 81 (181)
|.|..|++.|.....+..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 7899999999999999999875
No 51
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=91.50 E-value=0.17 Score=27.67 Aligned_cols=23 Identities=22% Similarity=0.625 Sum_probs=18.6
Q ss_pred ceeCCcccccCCChHHHHHhHHh
Q 037433 31 SYECTFCKRGFTNAQALGGHMNI 53 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~ 53 (181)
+|.|.+|++.|....++..|++.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 57788899888888888888753
No 52
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=89.36 E-value=0.25 Score=27.06 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=13.2
Q ss_pred eeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCC
Q 037433 32 YECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGP 67 (181)
Q Consensus 32 ~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k 67 (181)
|.|..||..+.-.. .++.|+.|+.
T Consensus 2 ~~C~~CGy~y~~~~------------~~~~CP~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEE------------APWVCPVCGA 25 (33)
T ss_pred EECCCCCCEECCCc------------CCCcCcCCCC
Confidence 56666765443221 5666666653
No 53
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=89.20 E-value=0.22 Score=48.43 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=47.5
Q ss_pred cCCCcceeCCcccccCCChHHHHHhHHh-h------------------------cCCCCccCCCCCCCCCCCchhHHHHH
Q 037433 26 SSAKRSYECTFCKRGFTNAQALGGHMNI-H------------------------RKDRAKAKQTTGPSFITSNPMLTHED 80 (181)
Q Consensus 26 h~~~kp~~C~~C~k~F~~~~~L~~H~~~-H------------------------~gekp~~C~~C~k~F~~~~~L~~H~~ 80 (181)
|.-.|-|+|..|+..|+....|..|||. | .+-++|.|..|..++..+.+|..|++
T Consensus 460 ~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~Lsihlq 539 (1406)
T KOG1146|consen 460 HSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQ 539 (1406)
T ss_pred ecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHH
Confidence 4556889999999999999999999997 1 02478999999999999999999976
Q ss_pred h
Q 037433 81 Y 81 (181)
Q Consensus 81 ~ 81 (181)
.
T Consensus 540 S 540 (1406)
T KOG1146|consen 540 S 540 (1406)
T ss_pred H
Confidence 3
No 54
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=88.79 E-value=2 Score=34.91 Aligned_cols=76 Identities=13% Similarity=0.091 Sum_probs=45.8
Q ss_pred cCCCcceeCCcccccCCChHHHHHhHHh--hcCCCCccCCCCCCCCCCC------chhHHHHHh------cCCCCCCCCC
Q 037433 26 SSAKRSYECTFCKRGFTNAQALGGHMNI--HRKDRAKAKQTTGPSFITS------NPMLTHEDY------MNPRYIAPIS 91 (181)
Q Consensus 26 h~~~kp~~C~~C~k~F~~~~~L~~H~~~--H~gekp~~C~~C~k~F~~~------~~L~~H~~~------~~~~~~c~~~ 91 (181)
..|.|-|.|.+|.. |.-...-..|+.. -.-...|+|..|++.=.+. .....|.+. ..+++.||-|
T Consensus 137 ~hGGrif~CsfC~~-flCEDDQFEHQAsCQvLe~E~~KC~SCNrlGq~sCLRCK~cfCddHvrrKg~ky~k~k~~PCPKC 215 (314)
T PF06524_consen 137 DHGGRIFKCSFCDN-FLCEDDQFEHQASCQVLESETFKCQSCNRLGQYSCLRCKICFCDDHVRRKGFKYEKGKPIPCPKC 215 (314)
T ss_pred cCCCeEEEeecCCC-eeeccchhhhhhhhhhhhcccccccccccccchhhhheeeeehhhhhhhcccccccCCCCCCCCC
Confidence 35678899999975 4444444467653 2233568888887532111 112345443 4577889999
Q ss_pred CCCCCCCCchh
Q 037433 92 SDTSRHSPVFE 102 (181)
Q Consensus 92 ~~~~~~~~~~~ 102 (181)
++.....-.+.
T Consensus 216 g~et~eTkdLS 226 (314)
T PF06524_consen 216 GYETQETKDLS 226 (314)
T ss_pred CCcccccccce
Confidence 98876544444
No 55
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=87.73 E-value=0.27 Score=26.80 Aligned_cols=23 Identities=9% Similarity=-0.065 Sum_probs=20.2
Q ss_pred CccCCCCCCCCCCCchhHHHHHh
Q 037433 59 AKAKQTTGPSFITSNPMLTHEDY 81 (181)
Q Consensus 59 p~~C~~C~k~F~~~~~L~~H~~~ 81 (181)
+|.|..|++.|.....+..|++.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 57899999999998888888764
No 56
>PRK04860 hypothetical protein; Provisional
Probab=84.64 E-value=0.66 Score=35.05 Aligned_cols=33 Identities=9% Similarity=-0.030 Sum_probs=26.7
Q ss_pred CCccCCCCCCCCCCCchhHHHHHh--cCCCCCCCCCCCC
Q 037433 58 RAKAKQTTGPSFITSNPMLTHEDY--MNPRYIAPISSDT 94 (181)
Q Consensus 58 kp~~C~~C~k~F~~~~~L~~H~~~--~~~~~~c~~~~~~ 94 (181)
-+|.|. |++ ....+.+|.++ +.++|.|..|.-.
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~ 152 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGET 152 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCce
Confidence 368998 987 67778999998 4778999999844
No 57
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.80 E-value=0.75 Score=37.13 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=31.4
Q ss_pred ceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCCCchhHHHHH
Q 037433 31 SYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFITSNPMLTHED 80 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~ 80 (181)
-|.|..||....... +-+|+..-++ .-|.|--|++.|.. ..++.|..
T Consensus 3 ~FtCnvCgEsvKKp~-vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 3 FFTCNVCGESVKKPQ-VEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred EEehhhhhhhccccc-hHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence 367778877655444 5667776666 56778888888877 45566654
No 58
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=83.71 E-value=0.33 Score=38.36 Aligned_cols=44 Identities=11% Similarity=0.314 Sum_probs=27.7
Q ss_pred CcceeCCcccccCCChHHHHHhHHh----------hcCCCCc-----cCCCCCCCCCCC
Q 037433 29 KRSYECTFCKRGFTNAQALGGHMNI----------HRKDRAK-----AKQTTGPSFITS 72 (181)
Q Consensus 29 ~kp~~C~~C~k~F~~~~~L~~H~~~----------H~gekp~-----~C~~C~k~F~~~ 72 (181)
++...|++|++.|.......+..++ ..+..|+ .|+.||.+|...
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 3567899999998887666555543 1123332 577777766543
No 59
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.39 E-value=0.38 Score=37.72 Aligned_cols=70 Identities=20% Similarity=0.276 Sum_probs=50.2
Q ss_pred CCCCCCCchhHHHHhhhcCCCcceeCCcccccCCChHHHHHhHH----------hhcCCCCccC--CCCCCCCCCCchhH
Q 037433 9 GSDHSSSDENEVKELDTSSAKRSYECTFCKRGFTNAQALGGHMN----------IHRKDRAKAK--QTTGPSFITSNPML 76 (181)
Q Consensus 9 c~~sf~~~s~L~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~----------~H~gekp~~C--~~C~k~F~~~~~L~ 76 (181)
|...|..-.+...|..+..+. .|.+|.+.|.+..-|..|+. +-+|.--|.| ..|+-.|.+....+
T Consensus 87 c~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT~r~Rk 163 (253)
T KOG4173|consen 87 CCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKTSRDRK 163 (253)
T ss_pred hHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhhhhhhh
Confidence 444444444455555443332 69999999999999999974 2346566899 57999999998888
Q ss_pred HHHHh
Q 037433 77 THEDY 81 (181)
Q Consensus 77 ~H~~~ 81 (181)
.|+-.
T Consensus 164 dH~I~ 168 (253)
T KOG4173|consen 164 DHMIR 168 (253)
T ss_pred hHHHH
Confidence 99865
No 60
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=81.37 E-value=1.7 Score=32.15 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=17.1
Q ss_pred CcceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCC
Q 037433 29 KRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPS 68 (181)
Q Consensus 29 ~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~ 68 (181)
..-|.|+.|+..|+...++.. ... ..-|.|+.||..
T Consensus 97 ~~~Y~Cp~C~~~y~~~ea~~~---~d~-~~~f~Cp~Cg~~ 132 (147)
T smart00531 97 NAYYKCPNCQSKYTFLEANQL---LDM-DGTFTCPRCGEE 132 (147)
T ss_pred CcEEECcCCCCEeeHHHHHHh---cCC-CCcEECCCCCCE
Confidence 345666666666654443321 011 222666666544
No 61
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=81.02 E-value=2 Score=32.34 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=18.6
Q ss_pred CCCcceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCC
Q 037433 27 SAKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPS 68 (181)
Q Consensus 27 ~~~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~ 68 (181)
+...-|.|+.|+..|+...++. --|.|+.||..
T Consensus 105 ~~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~ 137 (158)
T TIGR00373 105 TNNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAM 137 (158)
T ss_pred cCCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCE
Confidence 3444566666666666666553 24666666654
No 62
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=80.53 E-value=0.36 Score=36.23 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=9.5
Q ss_pred ccCCCCCCCCCCCc
Q 037433 60 KAKQTTGPSFITSN 73 (181)
Q Consensus 60 ~~C~~C~k~F~~~~ 73 (181)
++|+.||++|...-
T Consensus 29 ~~c~~c~~~f~~~e 42 (154)
T PRK00464 29 RECLACGKRFTTFE 42 (154)
T ss_pred eeccccCCcceEeE
Confidence 67777777776543
No 63
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=80.22 E-value=0.79 Score=38.73 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=43.0
Q ss_pred hHHHHhhhcCCCcceeCCccc---ccCC------ChHHHHHhHHhhcCCCCc----cCCCCCCCCCCCchhHHHHHh-cC
Q 037433 18 NEVKELDTSSAKRSYECTFCK---RGFT------NAQALGGHMNIHRKDRAK----AKQTTGPSFITSNPMLTHEDY-MN 83 (181)
Q Consensus 18 ~L~~h~~~h~~~kp~~C~~C~---k~F~------~~~~L~~H~~~H~gekp~----~C~~C~k~F~~~~~L~~H~~~-~~ 83 (181)
.|..|..+..+ .+.|..|- +.|. +...|..|+..-..+.-| .|..|...|-.-+.|.+|+|. |+
T Consensus 168 ~lk~H~K~~H~--~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE 245 (493)
T COG5236 168 ELKKHYKAQHG--FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHE 245 (493)
T ss_pred HHHHHHHhhcC--cEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccceecChHHHHHHHHhhhh
Confidence 45566555443 24455443 2332 233366666543333222 588888888888888888886 77
Q ss_pred CCCCCCCCC
Q 037433 84 PRYIAPISS 92 (181)
Q Consensus 84 ~~~~c~~~~ 92 (181)
+-|+|.+-+
T Consensus 246 ~ChICD~v~ 254 (493)
T COG5236 246 ACHICDMVG 254 (493)
T ss_pred hhhhhhccC
Confidence 777776655
No 64
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=79.97 E-value=1.2 Score=33.80 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCC
Q 037433 83 NPRYIAPISSDT 94 (181)
Q Consensus 83 ~~~~~c~~~~~~ 94 (181)
..|-.||+|+-+
T Consensus 147 e~P~~CPiCga~ 158 (166)
T COG1592 147 EAPEVCPICGAP 158 (166)
T ss_pred CCCCcCCCCCCh
Confidence 445555555543
No 65
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=79.43 E-value=1.3 Score=24.48 Aligned_cols=8 Identities=25% Similarity=0.937 Sum_probs=4.6
Q ss_pred eeCCcccc
Q 037433 32 YECTFCKR 39 (181)
Q Consensus 32 ~~C~~C~k 39 (181)
|.|.+||.
T Consensus 3 ~~C~~CG~ 10 (34)
T cd00729 3 WVCPVCGY 10 (34)
T ss_pred EECCCCCC
Confidence 55666654
No 66
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=78.45 E-value=2.2 Score=32.80 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=17.7
Q ss_pred CcceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCC
Q 037433 29 KRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSF 69 (181)
Q Consensus 29 ~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F 69 (181)
..-|.|+.|++.|+...++. --|.|+.||...
T Consensus 115 ~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L 146 (178)
T PRK06266 115 NMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEML 146 (178)
T ss_pred CCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCC
Confidence 34566666666666555542 246666666543
No 67
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=73.41 E-value=1.1 Score=35.94 Aligned_cols=46 Identities=13% Similarity=0.334 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCchhHHHHhhhcCCCcceeCCcccccCCChHHHHHh-HHhh
Q 037433 5 QKQVGSDHSSSDENEVKELDTSSAKRSYECTFCKRGFTNAQALGGH-MNIH 54 (181)
Q Consensus 5 ~~~~c~~sf~~~s~L~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H-~~~H 54 (181)
|-=.|.+-|.+...|.+|++ .|-|+|.+|.|..-.-.-|..| |.+|
T Consensus 12 wcwycnrefddekiliqhqk----akhfkchichkkl~sgpglsihcmqvh 58 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQK----AKHFKCHICHKKLFSGPGLSIHCMQVH 58 (341)
T ss_pred eeeecccccchhhhhhhhhh----hccceeeeehhhhccCCCceeehhhhh
Confidence 34468888999888888875 4679999998765555556555 4444
No 68
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=73.06 E-value=3.4 Score=35.34 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=39.9
Q ss_pred cceeCCcccccCCChHHHHHhHHhhcC-----------------------CCCccCCCCC---CCCCCCchhHHHHHh
Q 037433 30 RSYECTFCKRGFTNAQALGGHMNIHRK-----------------------DRAKAKQTTG---PSFITSNPMLTHEDY 81 (181)
Q Consensus 30 kp~~C~~C~k~F~~~~~L~~H~~~H~g-----------------------ekp~~C~~C~---k~F~~~~~L~~H~~~ 81 (181)
-|-.|.+|.+.|........||..+.| .+-|.|-.|. +.|.+....+.||..
T Consensus 165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence 457799999999999999999987654 1345677776 777777777778764
No 69
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=70.83 E-value=4 Score=23.45 Aligned_cols=24 Identities=21% Similarity=0.592 Sum_probs=14.2
Q ss_pred CCcceeCCcccccCCCh----HHHHHhH
Q 037433 28 AKRSYECTFCKRGFTNA----QALGGHM 51 (181)
Q Consensus 28 ~~kp~~C~~C~k~F~~~----~~L~~H~ 51 (181)
+..-..|.+|++.+... ..|.+|+
T Consensus 13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL 40 (45)
T PF02892_consen 13 DKKKAKCKYCGKVIKYSSGGTSNLKRHL 40 (45)
T ss_dssp CSS-EEETTTTEE-----SSTHHHHHHH
T ss_pred CcCeEEeCCCCeEEeeCCCcHHHHHHhh
Confidence 45567888888877663 6777777
No 70
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=70.04 E-value=3.7 Score=30.80 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=25.5
Q ss_pred cCCCCccCCCCCCCCCCCchhHHHHHhcCCCCCCCCCCCC
Q 037433 55 RKDRAKAKQTTGPSFITSNPMLTHEDYMNPRYIAPISSDT 94 (181)
Q Consensus 55 ~gekp~~C~~C~k~F~~~~~L~~H~~~~~~~~~c~~~~~~ 94 (181)
....-|.|+.|+..|+....+. ..|.||.|+-.
T Consensus 105 ~~~~~Y~Cp~c~~r~tf~eA~~-------~~F~Cp~Cg~~ 137 (158)
T TIGR00373 105 TNNMFFICPNMCVRFTFNEAME-------LNFTCPRCGAM 137 (158)
T ss_pred cCCCeEECCCCCcEeeHHHHHH-------cCCcCCCCCCE
Confidence 3445689999999988776653 48999999855
No 71
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=69.87 E-value=3 Score=23.33 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=19.7
Q ss_pred eCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCC
Q 037433 33 ECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFI 70 (181)
Q Consensus 33 ~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~ 70 (181)
.|+.|+..|.-...- +-.+.+..+|+.|+..|.
T Consensus 4 ~CP~C~~~f~v~~~~-----l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDK-----LPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHH-----cccCCcEEECCCCCcEee
Confidence 577777777665531 223344567777776653
No 72
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=69.53 E-value=2.7 Score=31.93 Aligned_cols=23 Identities=17% Similarity=0.471 Sum_probs=19.4
Q ss_pred ceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCC
Q 037433 31 SYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTG 66 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~ 66 (181)
-|.|.+||. ++-++-|.+|++||
T Consensus 134 ~~vC~vCGy-------------~~~ge~P~~CPiCg 156 (166)
T COG1592 134 VWVCPVCGY-------------THEGEAPEVCPICG 156 (166)
T ss_pred EEEcCCCCC-------------cccCCCCCcCCCCC
Confidence 699999984 45678899999998
No 73
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=69.51 E-value=1.4 Score=26.35 Aligned_cols=11 Identities=45% Similarity=1.114 Sum_probs=5.7
Q ss_pred eeCCcccccCC
Q 037433 32 YECTFCKRGFT 42 (181)
Q Consensus 32 ~~C~~C~k~F~ 42 (181)
|.|..|+..|.
T Consensus 6 y~C~~Cg~~fe 16 (52)
T TIGR02605 6 YRCTACGHRFE 16 (52)
T ss_pred EEeCCCCCEeE
Confidence 45555555444
No 74
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=69.24 E-value=2.9 Score=30.45 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=5.7
Q ss_pred ccCCCCCCCCCC
Q 037433 60 KAKQTTGPSFIT 71 (181)
Q Consensus 60 ~~C~~C~k~F~~ 71 (181)
++|..||+.|..
T Consensus 2 H~Ct~Cg~~f~d 13 (131)
T PF09845_consen 2 HQCTKCGRVFED 13 (131)
T ss_pred cccCcCCCCcCC
Confidence 344445554443
No 75
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=67.96 E-value=1.6 Score=24.54 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=14.9
Q ss_pred eeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCC
Q 037433 32 YECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGP 67 (181)
Q Consensus 32 ~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k 67 (181)
|.|..||+.|....... . ...-.|+.||.
T Consensus 6 y~C~~Cg~~fe~~~~~~------~-~~~~~CP~Cg~ 34 (41)
T smart00834 6 YRCEDCGHTFEVLQKIS------D-DPLATCPECGG 34 (41)
T ss_pred EEcCCCCCEEEEEEecC------C-CCCCCCCCCCC
Confidence 66777776665433221 1 23345666664
No 76
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=67.68 E-value=3.1 Score=23.12 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=18.6
Q ss_pred eeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCC
Q 037433 32 YECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSF 69 (181)
Q Consensus 32 ~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F 69 (181)
+.|..|+..|.-...... .......|+.|+..|
T Consensus 3 ~~CP~C~~~~~v~~~~~~-----~~~~~v~C~~C~~~~ 35 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLG-----ANGGKVRCGKCGHVW 35 (38)
T ss_pred EECCCCCCEEEeCHHHcC-----CCCCEEECCCCCCEE
Confidence 467777777665544321 111245677777655
No 77
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=67.53 E-value=4.4 Score=24.12 Aligned_cols=23 Identities=17% Similarity=0.651 Sum_probs=16.8
Q ss_pred cceeCCcccccCCCh-----HHHHHhHH
Q 037433 30 RSYECTFCKRGFTNA-----QALGGHMN 52 (181)
Q Consensus 30 kp~~C~~C~k~F~~~-----~~L~~H~~ 52 (181)
..-.|.+|++.++.. ++|.+|++
T Consensus 17 ~~a~C~~C~~~l~~~~~~gTs~L~rHl~ 44 (50)
T smart00614 17 QRAKCKYCGKKLSRSSKGGTSNLRRHLR 44 (50)
T ss_pred eEEEecCCCCEeeeCCCCCcHHHHHHHH
Confidence 346799999888655 47777776
No 78
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=65.77 E-value=3.6 Score=30.42 Aligned_cols=37 Identities=8% Similarity=0.096 Sum_probs=24.2
Q ss_pred CCCCccCCCCCCCCCCCchhHHHHHhcCCCCCCCCCCCC
Q 037433 56 KDRAKAKQTTGPSFITSNPMLTHEDYMNPRYIAPISSDT 94 (181)
Q Consensus 56 gekp~~C~~C~k~F~~~~~L~~H~~~~~~~~~c~~~~~~ 94 (181)
...-|.|+.|++.|.....+.. .. ....|.||.|+..
T Consensus 96 ~~~~Y~Cp~C~~~y~~~ea~~~-~d-~~~~f~Cp~Cg~~ 132 (147)
T smart00531 96 NNAYYKCPNCQSKYTFLEANQL-LD-MDGTFTCPRCGEE 132 (147)
T ss_pred CCcEEECcCCCCEeeHHHHHHh-cC-CCCcEECCCCCCE
Confidence 3456899999999886443322 01 2344999999854
No 79
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=65.02 E-value=5.3 Score=22.24 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=19.7
Q ss_pred eeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCC
Q 037433 32 YECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSF 69 (181)
Q Consensus 32 ~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F 69 (181)
..|.-|+..|.-.... +-...+..+|..|+..|
T Consensus 3 i~Cp~C~~~y~i~d~~-----ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEK-----IPPKGRKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHH-----CCCCCcEEECCCCCCEe
Confidence 3577777777666543 22233456777777665
No 80
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=65.01 E-value=3 Score=25.79 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=22.7
Q ss_pred hhcCCCcceeCCcccccCCChHHHHHhHHh
Q 037433 24 DTSSAKRSYECTFCKRGFTNAQALGGHMNI 53 (181)
Q Consensus 24 ~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~ 53 (181)
++..|+--+.|+-|+..|.......+|.+.
T Consensus 10 ~~RDGE~~lrCPRC~~~FR~~K~Y~RHVNK 39 (65)
T COG4049 10 RDRDGEEFLRCPRCGMVFRRRKDYIRHVNK 39 (65)
T ss_pred eccCCceeeeCCchhHHHHHhHHHHHHhhH
Confidence 344567778888888888888888888764
No 81
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=64.07 E-value=4.5 Score=31.05 Aligned_cols=33 Identities=9% Similarity=0.025 Sum_probs=25.0
Q ss_pred CCCccCCCCCCCCCCCchhHHHHHhcCCCCCCCCCCCCCC
Q 037433 57 DRAKAKQTTGPSFITSNPMLTHEDYMNPRYIAPISSDTSR 96 (181)
Q Consensus 57 ekp~~C~~C~k~F~~~~~L~~H~~~~~~~~~c~~~~~~~~ 96 (181)
..-|.|+.|++.|+....+ ...|.||.|+-.--
T Consensus 115 ~~~Y~Cp~C~~rytf~eA~-------~~~F~Cp~Cg~~L~ 147 (178)
T PRK06266 115 NMFFFCPNCHIRFTFDEAM-------EYGFRCPQCGEMLE 147 (178)
T ss_pred CCEEECCCCCcEEeHHHHh-------hcCCcCCCCCCCCe
Confidence 3557999999988876554 35899999986543
No 82
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=63.34 E-value=1.6 Score=42.87 Aligned_cols=49 Identities=12% Similarity=0.059 Sum_probs=39.8
Q ss_pred eCCcccccCCChHHHHHhHHh-hcCCCCccCCCCCCCCCCCchhHHHHHh
Q 037433 33 ECTFCKRGFTNAQALGGHMNI-HRKDRAKAKQTTGPSFITSNPMLTHEDY 81 (181)
Q Consensus 33 ~C~~C~k~F~~~~~L~~H~~~-H~gekp~~C~~C~k~F~~~~~L~~H~~~ 81 (181)
.|.-|+..+.+...+..|+.. |...|-|+|+.|+-.|.....|..|||.
T Consensus 438 e~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRs 487 (1406)
T KOG1146|consen 438 ELTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRS 487 (1406)
T ss_pred cccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccc
Confidence 345566677777777777664 7777999999999999999999999987
No 83
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=63.15 E-value=4.3 Score=29.69 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=17.3
Q ss_pred CcceeCCcccccCCChHHHHHhHHhhcCCCC
Q 037433 29 KRSYECTFCKRGFTNAQALGGHMNIHRKDRA 59 (181)
Q Consensus 29 ~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp 59 (181)
+..-.|-.||+.|+. |++|++.|.|--|
T Consensus 70 ~d~i~clecGk~~k~---LkrHL~~~~gltp 97 (132)
T PF05443_consen 70 PDYIICLECGKKFKT---LKRHLRTHHGLTP 97 (132)
T ss_dssp SS-EE-TBT--EESB---HHHHHHHTT-S-H
T ss_pred cCeeEEccCCcccch---HHHHHHHccCCCH
Confidence 345789999999987 5899999876543
No 84
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=62.91 E-value=3 Score=24.04 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=16.2
Q ss_pred eeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCC
Q 037433 32 YECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGP 67 (181)
Q Consensus 32 ~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k 67 (181)
|.|..||..|.....+ .. ...-.|+.|+.
T Consensus 6 y~C~~Cg~~fe~~~~~------~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 6 YRCEECGHEFEVLQSI------SE-DDPVPCPECGS 34 (42)
T ss_pred EEeCCCCCEEEEEEEc------CC-CCCCcCCCCCC
Confidence 6677777666543321 11 34556777764
No 85
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=61.62 E-value=5.2 Score=28.18 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=17.6
Q ss_pred ccCCCCCCCCCCCchhHHHHHhcCCCCCCCCCCCC
Q 037433 60 KAKQTTGPSFITSNPMLTHEDYMNPRYIAPISSDT 94 (181)
Q Consensus 60 ~~C~~C~k~F~~~~~L~~H~~~~~~~~~c~~~~~~ 94 (181)
..|+.||+.|.-.. ..|.+||.|+..
T Consensus 10 R~Cp~CG~kFYDLn---------k~PivCP~CG~~ 35 (108)
T PF09538_consen 10 RTCPSCGAKFYDLN---------KDPIVCPKCGTE 35 (108)
T ss_pred ccCCCCcchhccCC---------CCCccCCCCCCc
Confidence 36888888886432 356678888743
No 86
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=61.31 E-value=2 Score=39.71 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=42.5
Q ss_pred eCCcccccCCChHHHHHhHHhhcCCCCc-cCCCCCCCCCCCchhHHHHHhcCCCCCCCCCCCCC
Q 037433 33 ECTFCKRGFTNAQALGGHMNIHRKDRAK-AKQTTGPSFITSNPMLTHEDYMNPRYIAPISSDTS 95 (181)
Q Consensus 33 ~C~~C~k~F~~~~~L~~H~~~H~gekp~-~C~~C~k~F~~~~~L~~H~~~~~~~~~c~~~~~~~ 95 (181)
.|+.||-.|+-..+|--- |-+|..+.| .|+.|.+-+...-+ .|.|..+..||.|+...
T Consensus 125 ~CT~CGPRfTIi~alPYD-R~nTsM~~F~lC~~C~~EY~dP~n----RRfHAQp~aCp~CGP~~ 183 (750)
T COG0068 125 NCTNCGPRFTIIEALPYD-RENTSMADFPLCPFCDKEYKDPLN----RRFHAQPIACPKCGPHL 183 (750)
T ss_pred ccCCCCcceeeeccCCCC-cccCccccCcCCHHHHHHhcCccc----cccccccccCcccCCCe
Confidence 488999999888777543 456777777 68999887666544 34577888999998543
No 87
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=61.26 E-value=5.8 Score=31.43 Aligned_cols=27 Identities=15% Similarity=0.460 Sum_probs=21.7
Q ss_pred CCCcceeCCcccccCCChHHHHHhHHh
Q 037433 27 SAKRSYECTFCKRGFTNAQALGGHMNI 53 (181)
Q Consensus 27 ~~~kp~~C~~C~k~F~~~~~L~~H~~~ 53 (181)
..+..|.|..|+|.|.-...+.+|+..
T Consensus 73 ~~~~K~~C~lc~KlFkg~eFV~KHI~n 99 (214)
T PF04959_consen 73 EDEDKWRCPLCGKLFKGPEFVRKHIFN 99 (214)
T ss_dssp SSSEEEEE-SSS-EESSHHHHHHHHHH
T ss_pred HcCCEECCCCCCcccCChHHHHHHHhh
Confidence 345679999999999999999999875
No 88
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=59.70 E-value=6.8 Score=22.91 Aligned_cols=11 Identities=36% Similarity=0.688 Sum_probs=6.8
Q ss_pred eeCCcccccCC
Q 037433 32 YECTFCKRGFT 42 (181)
Q Consensus 32 ~~C~~C~k~F~ 42 (181)
|.|..||..|.
T Consensus 3 Y~C~~Cg~~~~ 13 (44)
T smart00659 3 YICGECGRENE 13 (44)
T ss_pred EECCCCCCEee
Confidence 56666666554
No 89
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=59.59 E-value=5.6 Score=23.93 Aligned_cols=12 Identities=33% Similarity=0.855 Sum_probs=8.0
Q ss_pred cceeCCcccccC
Q 037433 30 RSYECTFCKRGF 41 (181)
Q Consensus 30 kp~~C~~C~k~F 41 (181)
..|.|..||+.|
T Consensus 5 ~~Y~C~~Cg~~~ 16 (49)
T COG1996 5 MEYKCARCGREV 16 (49)
T ss_pred EEEEhhhcCCee
Confidence 356777777766
No 90
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=58.86 E-value=2.8 Score=24.55 Aligned_cols=11 Identities=36% Similarity=0.984 Sum_probs=6.1
Q ss_pred ceeCCcccccC
Q 037433 31 SYECTFCKRGF 41 (181)
Q Consensus 31 p~~C~~C~k~F 41 (181)
.|.|..||..|
T Consensus 3 ~y~C~~CG~~~ 13 (46)
T PRK00398 3 EYKCARCGREV 13 (46)
T ss_pred EEECCCCCCEE
Confidence 35566666544
No 91
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=58.77 E-value=3.8 Score=27.69 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=18.7
Q ss_pred cceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCC
Q 037433 30 RSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFIT 71 (181)
Q Consensus 30 kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~ 71 (181)
..|.|++|++. .+.++-+ .-+.|..|+..|.-
T Consensus 34 ~~~~Cp~C~~~--------~VkR~a~--GIW~C~kCg~~fAG 65 (89)
T COG1997 34 AKHVCPFCGRT--------TVKRIAT--GIWKCRKCGAKFAG 65 (89)
T ss_pred cCCcCCCCCCc--------ceeeecc--CeEEcCCCCCeecc
Confidence 35778888753 1222222 24678888777763
No 92
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=58.46 E-value=2.7 Score=27.46 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=5.8
Q ss_pred CCccCC--CCCCCCC
Q 037433 58 RAKAKQ--TTGPSFI 70 (181)
Q Consensus 58 kp~~C~--~C~k~F~ 70 (181)
+-+.|. .||.+|.
T Consensus 26 ~Y~qC~N~eCg~tF~ 40 (72)
T PRK09678 26 RYHQCQNVNCSATFI 40 (72)
T ss_pred eeeecCCCCCCCEEE
Confidence 334444 4544444
No 93
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=58.44 E-value=8.1 Score=24.20 Aligned_cols=33 Identities=12% Similarity=-0.027 Sum_probs=18.9
Q ss_pred CccCCCCCCCCCCCchhHHHHHhcCCCCCCCCCCCC
Q 037433 59 AKAKQTTGPSFITSNPMLTHEDYMNPRYIAPISSDT 94 (181)
Q Consensus 59 p~~C~~C~k~F~~~~~L~~H~~~~~~~~~c~~~~~~ 94 (181)
.|.|+.||..-...... -|..-.+|.||.|++.
T Consensus 27 ~F~CPnCGe~~I~Rc~~---CRk~g~~Y~Cp~CGF~ 59 (61)
T COG2888 27 KFPCPNCGEVEIYRCAK---CRKLGNPYRCPKCGFE 59 (61)
T ss_pred EeeCCCCCceeeehhhh---HHHcCCceECCCcCcc
Confidence 46777777554433221 1235667778877753
No 94
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.98 E-value=11 Score=26.77 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=10.4
Q ss_pred ceeCCcccccCCChHHHHH
Q 037433 31 SYECTFCKRGFTNAQALGG 49 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~ 49 (181)
|-.|.+|+-......+|.+
T Consensus 15 P~~CpiCgLtLVss~HLAR 33 (112)
T TIGR00622 15 PVECPICGLTLILSTHLAR 33 (112)
T ss_pred CCcCCcCCCEEeccchHHH
Confidence 4555556555555555544
No 95
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=54.92 E-value=10 Score=33.00 Aligned_cols=40 Identities=18% Similarity=0.354 Sum_probs=28.0
Q ss_pred hcCCCcceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCC
Q 037433 25 TSSAKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGP 67 (181)
Q Consensus 25 ~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k 67 (181)
.-+...-|.|..|.+.|+...++.- +-.-.--|.|..|+-
T Consensus 122 d~t~~~~Y~Cp~C~kkyt~Lea~~L---~~~~~~~F~C~~C~g 161 (436)
T KOG2593|consen 122 DDTNVAGYVCPNCQKKYTSLEALQL---LDNETGEFHCENCGG 161 (436)
T ss_pred hccccccccCCccccchhhhHHHHh---hcccCceEEEecCCC
Confidence 3456677999999999998887642 222234688988864
No 96
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=51.59 E-value=3.2 Score=38.46 Aligned_cols=26 Identities=27% Similarity=0.626 Sum_probs=23.5
Q ss_pred ceeCCcccccCCChHHHHHhHHhhcC
Q 037433 31 SYECTFCKRGFTNAQALGGHMNIHRK 56 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~H~g 56 (181)
-|.|..|+|.|-....+..||++|+-
T Consensus 792 iFpCreC~kvF~KiKSrNAHMK~Hr~ 817 (907)
T KOG4167|consen 792 IFPCRECGKVFFKIKSRNAHMKTHRQ 817 (907)
T ss_pred eeehHHHHHHHHHHhhhhHHHHHHHH
Confidence 38999999999999999999999874
No 97
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=51.20 E-value=9 Score=28.67 Aligned_cols=35 Identities=17% Similarity=0.472 Sum_probs=20.8
Q ss_pred CCcceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCC
Q 037433 28 AKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGP 67 (181)
Q Consensus 28 ~~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k 67 (181)
..-+|.|. |+.-|.+ ..+|-.+-.|+ -|.|..|+.
T Consensus 114 ~~~~Y~C~-C~q~~l~---~RRhn~~~~g~-~YrC~~C~g 148 (156)
T COG3091 114 TTYPYRCQ-CQQHYLR---IRRHNTVRRGE-VYRCGKCGG 148 (156)
T ss_pred cceeEEee-cCCccch---hhhcccccccc-eEEeccCCc
Confidence 34567777 7766544 23444445555 677777764
No 98
>PF15269 zf-C2H2_7: Zinc-finger
Probab=50.69 E-value=8 Score=22.84 Aligned_cols=22 Identities=9% Similarity=0.025 Sum_probs=17.4
Q ss_pred ccCCCCCCCCCCCchhHHHHHh
Q 037433 60 KAKQTTGPSFITSNPMLTHEDY 81 (181)
Q Consensus 60 ~~C~~C~k~F~~~~~L~~H~~~ 81 (181)
|+|-.|.-+...+++|..||+.
T Consensus 21 ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ceeecCCcccchHHHHHHHHHH
Confidence 4787887777788888888875
No 99
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=48.48 E-value=4.2 Score=34.52 Aligned_cols=24 Identities=25% Similarity=0.695 Sum_probs=18.0
Q ss_pred CcceeCCc--ccccCCChHHHHHhHH
Q 037433 29 KRSYECTF--CKRGFTNAQALGGHMN 52 (181)
Q Consensus 29 ~kp~~C~~--C~k~F~~~~~L~~H~~ 52 (181)
.++|.|.+ |.+.++..--|+.|..
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~ 372 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKL 372 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccc
Confidence 57888876 8888888777766643
No 100
>PRK12860 transcriptional activator FlhC; Provisional
Probab=48.21 E-value=15 Score=28.61 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=33.4
Q ss_pred ccCCChHHHHHhHHhhcCCCCccCCCCCCCCCCCchhHHHHHhcCCCCCCCCCCCCC
Q 037433 39 RGFTNAQALGGHMNIHRKDRAKAKQTTGPSFITSNPMLTHEDYMNPRYIAPISSDTS 95 (181)
Q Consensus 39 k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~~~~~~~c~~~~~~~ 95 (181)
-.|++.-.|.+.+... --.-..|..|+-.|....+ ..+..|.|++|..|.
T Consensus 115 Ls~tRAw~LvRf~~s~-~L~l~~C~~Cgg~fv~~~~------e~~~~f~CplC~~ps 164 (189)
T PRK12860 115 LDLTRAWTLVRFFDAG-MLQLARCCRCGGKFVTHAH------DLRHNFVCGLCQPPS 164 (189)
T ss_pred ecHHHHHHHHHHhcCC-CeeeccCCCCCCCeecccc------ccCCCCcCCCCCCcc
Confidence 4667777777776533 1234579999988875432 346789999999443
No 101
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=47.86 E-value=12 Score=26.06 Aligned_cols=13 Identities=31% Similarity=0.703 Sum_probs=7.1
Q ss_pred ceeCCcccccCCC
Q 037433 31 SYECTFCKRGFTN 43 (181)
Q Consensus 31 p~~C~~C~k~F~~ 43 (181)
|+.|..||..|..
T Consensus 2 pH~CtrCG~vf~~ 14 (112)
T COG3364 2 PHQCTRCGEVFDD 14 (112)
T ss_pred Cceeccccccccc
Confidence 4455555555554
No 102
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=47.01 E-value=9.6 Score=35.36 Aligned_cols=46 Identities=13% Similarity=0.293 Sum_probs=23.1
Q ss_pred eeCCcccccCCChHHHHH-h------HHhhcCCCCccCCCCCCCCCCCchhHH
Q 037433 32 YECTFCKRGFTNAQALGG-H------MNIHRKDRAKAKQTTGPSFITSNPMLT 77 (181)
Q Consensus 32 ~~C~~C~k~F~~~~~L~~-H------~~~H~gekp~~C~~C~k~F~~~~~L~~ 77 (181)
..|..|...|+..--.+. | ++.-...|--+||.|+.+|...+-+..
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRI 696 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Confidence 568877754443332221 1 111122344567777777776655443
No 103
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=46.10 E-value=22 Score=30.60 Aligned_cols=46 Identities=26% Similarity=0.452 Sum_probs=36.8
Q ss_pred CCCCCCCCchhHHHHhhhcCC-----------------------CcceeCCccc---ccCCChHHHHHhHHh
Q 037433 8 VGSDHSSSDENEVKELDTSSA-----------------------KRSYECTFCK---RGFTNAQALGGHMNI 53 (181)
Q Consensus 8 ~c~~sf~~~s~L~~h~~~h~~-----------------------~kp~~C~~C~---k~F~~~~~L~~H~~~ 53 (181)
.|.+.|.+-.....||..+.| ..-|.|.+|. +.|....++..||..
T Consensus 171 fC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 171 FCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred ecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence 377777777777888877655 2348899999 999999999999984
No 104
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=45.99 E-value=16 Score=18.67 Aligned_cols=18 Identities=11% Similarity=-0.062 Sum_probs=9.0
Q ss_pred cCCCCCCCCCCCchhHHHH
Q 037433 61 AKQTTGPSFITSNPMLTHE 79 (181)
Q Consensus 61 ~C~~C~k~F~~~~~L~~H~ 79 (181)
.|++|++.+ ....+..|.
T Consensus 3 ~CPiC~~~v-~~~~in~HL 20 (26)
T smart00734 3 QCPVCFREV-PENLINSHL 20 (26)
T ss_pred cCCCCcCcc-cHHHHHHHH
Confidence 456666555 333444554
No 105
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=45.52 E-value=14 Score=26.78 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=14.5
Q ss_pred cCCCCCCCCCCCchhHHHHHhcCCCCCCCCCCCC
Q 037433 61 AKQTTGPSFITSNPMLTHEDYMNPRYIAPISSDT 94 (181)
Q Consensus 61 ~C~~C~k~F~~~~~L~~H~~~~~~~~~c~~~~~~ 94 (181)
.|+.||+.|.-. ...|..||.|+..
T Consensus 11 ~Cp~cg~kFYDL---------nk~p~vcP~cg~~ 35 (129)
T TIGR02300 11 ICPNTGSKFYDL---------NRRPAVSPYTGEQ 35 (129)
T ss_pred cCCCcCcccccc---------CCCCccCCCcCCc
Confidence 577777766532 2345567777643
No 106
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=44.86 E-value=16 Score=31.12 Aligned_cols=23 Identities=26% Similarity=0.680 Sum_probs=19.0
Q ss_pred ceeCCcccccCCChHHHHHhHHh
Q 037433 31 SYECTFCKRGFTNAQALGGHMNI 53 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~ 53 (181)
.+.|-+|.+.|..+..|+.||+.
T Consensus 195 r~~CLyCekifrdkntLkeHMrk 217 (423)
T KOG2482|consen 195 RLRCLYCEKIFRDKNTLKEHMRK 217 (423)
T ss_pred hheeeeeccccCCcHHHHHHHHh
Confidence 46788888888888888888874
No 107
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=44.48 E-value=19 Score=22.53 Aligned_cols=34 Identities=12% Similarity=-0.015 Sum_probs=19.0
Q ss_pred CCccCCCCCCCCCCCchhHHHHHhcCCCCCCCCCCCC
Q 037433 58 RAKAKQTTGPSFITSNPMLTHEDYMNPRYIAPISSDT 94 (181)
Q Consensus 58 kp~~C~~C~k~F~~~~~L~~H~~~~~~~~~c~~~~~~ 94 (181)
..|.|+.||+.-...-. .-|..-.+|.||.|++.
T Consensus 24 ~~F~CPnCG~~~I~RC~---~CRk~~~~Y~CP~CGF~ 57 (59)
T PRK14890 24 VKFLCPNCGEVIIYRCE---KCRKQSNPYTCPKCGFE 57 (59)
T ss_pred CEeeCCCCCCeeEeech---hHHhcCCceECCCCCCc
Confidence 34677778765222211 12234567788888754
No 108
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=42.32 E-value=17 Score=31.72 Aligned_cols=38 Identities=3% Similarity=-0.045 Sum_probs=26.1
Q ss_pred cCCCCccCCCCCCCCCCCchhHHHHHhcCCCCCCCCCCC
Q 037433 55 RKDRAKAKQTTGPSFITSNPMLTHEDYMNPRYIAPISSD 93 (181)
Q Consensus 55 ~gekp~~C~~C~k~F~~~~~L~~H~~~~~~~~~c~~~~~ 93 (181)
+...-|.|+.|.+.|.....++- +--....|.|..|+-
T Consensus 124 t~~~~Y~Cp~C~kkyt~Lea~~L-~~~~~~~F~C~~C~g 161 (436)
T KOG2593|consen 124 TNVAGYVCPNCQKKYTSLEALQL-LDNETGEFHCENCGG 161 (436)
T ss_pred cccccccCCccccchhhhHHHHh-hcccCceEEEecCCC
Confidence 44567999999999987765431 111346789999953
No 109
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=42.32 E-value=3.1 Score=37.63 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=36.9
Q ss_pred CchhHHHHhhhcCCCcceeCCcccccCCChHHHHHhHHhhcCC-CCccCCCCCCCCCCCc
Q 037433 15 SDENEVKELDTSSAKRSYECTFCKRGFTNAQALGGHMNIHRKD-RAKAKQTTGPSFITSN 73 (181)
Q Consensus 15 ~~s~L~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~ge-kp~~C~~C~k~F~~~~ 73 (181)
+.+.+++|--+|....--+|..|+|+|..+-.+ |..| ....|..|..+|-.+.
T Consensus 237 rE~~fvrHHWVHrrRqeGkC~~CgKgFQQKf~F------hsKEivAisCSWCKqayH~Kv 290 (1004)
T KOG0782|consen 237 RESGFVRHHWVHRRRQEGKCNTCGKGFQQKFFF------HSKEIVAISCSWCKQAYHLKV 290 (1004)
T ss_pred ccccchHHhHhhHhhhccccchhhhhhhhheee------ccccEEEEEehHHHHHhhcch
Confidence 344788888888776667899999998765543 4444 3567888877766554
No 110
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=41.33 E-value=6 Score=26.93 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=17.9
Q ss_pred ceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCC
Q 037433 31 SYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFIT 71 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~ 71 (181)
.|.|++|++.-.... ..-.+.|..|++.|+-
T Consensus 36 ~y~CpfCgk~~vkR~----------a~GIW~C~~C~~~~AG 66 (90)
T PTZ00255 36 KYFCPFCGKHAVKRQ----------AVGIWRCKGCKKTVAG 66 (90)
T ss_pred CccCCCCCCCceeee----------eeEEEEcCCCCCEEeC
Confidence 578888875321111 1234678888877753
No 111
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=39.79 E-value=17 Score=26.23 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=21.6
Q ss_pred CCcceeCCcccccCCChHHHHHhHHh
Q 037433 28 AKRSYECTFCKRGFTNAQALGGHMNI 53 (181)
Q Consensus 28 ~~kp~~C~~C~k~F~~~~~L~~H~~~ 53 (181)
|.--|-|..|.+-|....+|..|.++
T Consensus 54 G~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 54 GGGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred CCceeehhhhhhhhcchHHHHHHHhc
Confidence 33458899999999999999999764
No 112
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=39.38 E-value=7.6 Score=28.90 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=8.0
Q ss_pred ccCCCCCCCCCCC
Q 037433 60 KAKQTTGPSFITS 72 (181)
Q Consensus 60 ~~C~~C~k~F~~~ 72 (181)
-.|..|++.|++-
T Consensus 29 ReC~~C~~RFTTy 41 (147)
T TIGR00244 29 RECLECHERFTTF 41 (147)
T ss_pred ccCCccCCcccee
Confidence 4566666666653
No 113
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=38.71 E-value=8.8 Score=28.69 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=8.1
Q ss_pred ccCCCCCCCCCCC
Q 037433 60 KAKQTTGPSFITS 72 (181)
Q Consensus 60 ~~C~~C~k~F~~~ 72 (181)
-.|..|++.|++.
T Consensus 29 ReC~~C~~RFTTf 41 (156)
T COG1327 29 RECLECGERFTTF 41 (156)
T ss_pred hcccccccccchh
Confidence 3566677666654
No 114
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=38.51 E-value=5.7 Score=27.10 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=17.3
Q ss_pred ceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCC
Q 037433 31 SYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFI 70 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~ 70 (181)
.|.|++|++.-.. +. ..--+.|..|++.|+
T Consensus 35 ~y~CpfCgk~~vk--------R~--a~GIW~C~~C~~~~A 64 (91)
T TIGR00280 35 KYVCPFCGKKTVK--------RG--STGIWTCRKCGAKFA 64 (91)
T ss_pred CccCCCCCCCceE--------EE--eeEEEEcCCCCCEEe
Confidence 5778888753211 11 112467888887765
No 115
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=37.02 E-value=28 Score=20.74 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=14.3
Q ss_pred eCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCC
Q 037433 33 ECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFIT 71 (181)
Q Consensus 33 ~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~ 71 (181)
.|..|++.|.. ..+.+.|..||+.|-.
T Consensus 4 ~C~~C~~~F~~------------~~rk~~Cr~Cg~~~C~ 30 (57)
T cd00065 4 SCMGCGKPFTL------------TRRRHHCRNCGRIFCS 30 (57)
T ss_pred cCcccCccccC------------CccccccCcCcCCcCh
Confidence 35666666653 1234456666665543
No 117
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.98 E-value=13 Score=29.28 Aligned_cols=47 Identities=17% Similarity=0.283 Sum_probs=36.8
Q ss_pred cceeCCc--ccccCCChHHHHHhHHh-hcCCCCccCCCCCCCCCCCchhHHHHH
Q 037433 30 RSYECTF--CKRGFTNAQALGGHMNI-HRKDRAKAKQTTGPSFITSNPMLTHED 80 (181)
Q Consensus 30 kp~~C~~--C~k~F~~~~~L~~H~~~-H~gekp~~C~~C~k~F~~~~~L~~H~~ 80 (181)
+.|.|.+ |-+.|........|-.+ |+ -.|.+|.+.|.+..-|..|+-
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~----~sCs~C~r~~Pt~hLLd~HI~ 127 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHG----NSCSFCKRAFPTGHLLDAHIL 127 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhccc----chhHHHHHhCCchhhhhHHHH
Confidence 4588987 88888888877777654 33 379999999999988888854
No 118
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=36.52 E-value=31 Score=23.86 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=16.7
Q ss_pred eeC----CcccccCCChHHHHHhHHhh
Q 037433 32 YEC----TFCKRGFTNAQALGGHMNIH 54 (181)
Q Consensus 32 ~~C----~~C~k~F~~~~~L~~H~~~H 54 (181)
|.| ..|+..+.....+..|.+.+
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~ 107 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKE 107 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHh
Confidence 677 67777777777777777654
No 119
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.36 E-value=7.6 Score=25.58 Aligned_cols=30 Identities=33% Similarity=0.546 Sum_probs=17.3
Q ss_pred ceeCCcccccCCChHHHHHhHHhhcCCCCc-cCCCCCCC
Q 037433 31 SYECTFCKRGFTNAQALGGHMNIHRKDRAK-AKQTTGPS 68 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~H~gekp~-~C~~C~k~ 68 (181)
.|+|..|+..|..- .+| .+-|+ .|+.|+..
T Consensus 12 ~Y~c~~cg~~~dvv----q~~----~ddplt~ce~c~a~ 42 (82)
T COG2331 12 SYECTECGNRFDVV----QAM----TDDPLTTCEECGAR 42 (82)
T ss_pred EEeecccchHHHHH----Hhc----ccCccccChhhChH
Confidence 47888887655432 222 24555 57777643
No 120
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=35.25 E-value=18 Score=26.42 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=9.0
Q ss_pred cceeCCcccccCCCh
Q 037433 30 RSYECTFCKRGFTNA 44 (181)
Q Consensus 30 kp~~C~~C~k~F~~~ 44 (181)
..+.|..||..|...
T Consensus 69 ~~~~C~~CG~~~~~~ 83 (135)
T PRK03824 69 AVLKCRNCGNEWSLK 83 (135)
T ss_pred eEEECCCCCCEEecc
Confidence 346677777666543
No 121
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=35.22 E-value=24 Score=25.91 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=17.2
Q ss_pred hcCCCcceeCCcccccCCChHHH
Q 037433 25 TSSAKRSYECTFCKRGFTNAQAL 47 (181)
Q Consensus 25 ~h~~~kp~~C~~C~k~F~~~~~L 47 (181)
+-+..+-|+|.+|..+......|
T Consensus 74 vF~d~~lYeCnIC~etS~ee~FL 96 (140)
T PF05290_consen 74 VFLDPKLYECNICKETSAEERFL 96 (140)
T ss_pred eecCCCceeccCcccccchhhcC
Confidence 34556889999999877766655
No 122
>PRK12722 transcriptional activator FlhC; Provisional
Probab=35.07 E-value=32 Score=26.66 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=33.0
Q ss_pred ccCCChHHHHHhHHhhcCCCCccCCCCCCCCCCCchhHHHHHhcCCCCCCCCCCCCC
Q 037433 39 RGFTNAQALGGHMNIHRKDRAKAKQTTGPSFITSNPMLTHEDYMNPRYIAPISSDTS 95 (181)
Q Consensus 39 k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~~~~~~~c~~~~~~~ 95 (181)
-.|++.-.|.+.+.... -.-..|..|+-.|..... ..+..|.|++|+.|.
T Consensus 115 Ls~tRAw~LvRf~~s~~-L~l~~C~~Cgg~fv~~~~------e~~~~f~CplC~~ps 164 (187)
T PRK12722 115 LSLTRAWTLVRFVDSGM-LQLSSCNCCGGHFVTHAH------DPVGSFVCGLCQPPS 164 (187)
T ss_pred ecHHHHHHHHHHHhcCc-EeeccCCCCCCCeecccc------ccCCCCcCCCCCCcc
Confidence 46677777777665431 133479999988875432 336789999999654
No 123
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=34.89 E-value=13 Score=26.92 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=23.9
Q ss_pred HHHhhhcCCCcceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCCCC
Q 037433 20 VKELDTSSAKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFITS 72 (181)
Q Consensus 20 ~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~ 72 (181)
+.+++...+. -.|+.|+... ..++-..-.+...|+|+.|++.|...
T Consensus 21 ~~~~~~~~~~--~~cP~C~s~~-----~~k~g~~~~~~qRyrC~~C~~tf~~~ 66 (129)
T COG3677 21 AYAIRMQITK--VNCPRCKSSN-----VVKIGGIRRGHQRYKCKSCGSTFTVE 66 (129)
T ss_pred HHHHhhhccc--CcCCCCCccc-----eeeECCccccccccccCCcCcceeee
Confidence 4445544442 2477776432 11111122335567888888887643
No 124
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=34.54 E-value=20 Score=26.34 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=18.1
Q ss_pred eeCCcccccCCChHHHHHhHHhhcCCCC
Q 037433 32 YECTFCKRGFTNAQALGGHMNIHRKDRA 59 (181)
Q Consensus 32 ~~C~~C~k~F~~~~~L~~H~~~H~gekp 59 (181)
..|-.+||.|+. |++|+.+|-+--|
T Consensus 77 IicLEDGkkfKS---LKRHL~t~~gmTP 101 (148)
T COG4957 77 IICLEDGKKFKS---LKRHLTTHYGLTP 101 (148)
T ss_pred EEEeccCcchHH---HHHHHhcccCCCH
Confidence 467788888764 7888888776544
No 125
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=34.52 E-value=19 Score=25.45 Aligned_cols=11 Identities=0% Similarity=-0.178 Sum_probs=5.4
Q ss_pred ccCCCCCCCCC
Q 037433 60 KAKQTTGPSFI 70 (181)
Q Consensus 60 ~~C~~C~k~F~ 70 (181)
..|..|++.|.
T Consensus 71 ~~C~~Cg~~~~ 81 (115)
T TIGR00100 71 CECEDCSEEVS 81 (115)
T ss_pred EEcccCCCEEe
Confidence 34555554444
No 126
>PRK12496 hypothetical protein; Provisional
Probab=34.04 E-value=35 Score=25.73 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=15.4
Q ss_pred ccCCCCCCCCCCCchhHHHHHhcCCCCCCCCCCCC
Q 037433 60 KAKQTTGPSFITSNPMLTHEDYMNPRYIAPISSDT 94 (181)
Q Consensus 60 ~~C~~C~k~F~~~~~L~~H~~~~~~~~~c~~~~~~ 94 (181)
|.|..|++.|.... ..-.||+|+.+
T Consensus 128 ~~C~gC~~~~~~~~----------~~~~C~~CG~~ 152 (164)
T PRK12496 128 KVCKGCKKKYPEDY----------PDDVCEICGSP 152 (164)
T ss_pred EECCCCCccccCCC----------CCCcCCCCCCh
Confidence 57888888775321 11248888754
No 127
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=33.66 E-value=14 Score=23.20 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=9.6
Q ss_pred eCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCC
Q 037433 33 ECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFI 70 (181)
Q Consensus 33 ~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~ 70 (181)
.|..|++.|.. ..+.+.|..||+.|-
T Consensus 11 ~C~~C~~~F~~------------~~rrhhCr~CG~~vC 36 (69)
T PF01363_consen 11 NCMICGKKFSL------------FRRRHHCRNCGRVVC 36 (69)
T ss_dssp B-TTT--B-BS------------SS-EEE-TTT--EEE
T ss_pred cCcCcCCcCCC------------ceeeEccCCCCCEEC
Confidence 46677777743 134456666666554
No 128
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.61 E-value=32 Score=31.86 Aligned_cols=51 Identities=14% Similarity=0.290 Sum_probs=25.7
Q ss_pred eCCcccccCCChHHHHHhHHhhcCCCCccCCCC------CCCCCCCchhHHHHHhcCCCCCCC
Q 037433 33 ECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTT------GPSFITSNPMLTHEDYMNPRYIAP 89 (181)
Q Consensus 33 ~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C------~k~F~~~~~L~~H~~~~~~~~~c~ 89 (181)
.|.+|...|.....|.+|++.+ -|.|.+| +.-|.....|..|.+.+| |+|.
T Consensus 184 ~C~~C~~~fld~~el~rH~~~~----h~~chfC~~~~~~neyy~~~~dLe~HfR~~H--flCE 240 (669)
T KOG2231|consen 184 LCKFCHERFLDDDELYRHLRFD----HEFCHFCDYKTGQNEYYNDYDDLEEHFRKGH--FLCE 240 (669)
T ss_pred cchhhhhhhccHHHHHHhhccc----eeheeecCcccccchhcccchHHHHHhhhcC--cccc
Confidence 3555666666666666555532 2334444 223445555666655432 4455
No 129
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=33.29 E-value=7.2 Score=26.55 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=16.5
Q ss_pred ceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCC
Q 037433 31 SYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFI 70 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~ 70 (181)
.|.|++|++.-... . ..--+.|..|++.|+
T Consensus 36 ~y~CpfCgk~~vkR--------~--a~GIW~C~~C~~~~A 65 (90)
T PRK03976 36 KHVCPVCGRPKVKR--------V--GTGIWECRKCGAKFA 65 (90)
T ss_pred CccCCCCCCCceEE--------E--EEEEEEcCCCCCEEe
Confidence 57788886532111 1 112467777777665
No 130
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=32.93 E-value=23 Score=24.98 Aligned_cols=10 Identities=0% Similarity=-0.429 Sum_probs=4.8
Q ss_pred cCCCCCCCCC
Q 037433 61 AKQTTGPSFI 70 (181)
Q Consensus 61 ~C~~C~k~F~ 70 (181)
.|..|+..|.
T Consensus 72 ~C~~Cg~~~~ 81 (113)
T PRK12380 72 WCWDCSQVVE 81 (113)
T ss_pred EcccCCCEEe
Confidence 4555554443
No 131
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=32.66 E-value=38 Score=18.32 Aligned_cols=9 Identities=11% Similarity=-0.016 Sum_probs=4.7
Q ss_pred CccCCCCCC
Q 037433 59 AKAKQTTGP 67 (181)
Q Consensus 59 p~~C~~C~k 67 (181)
+.+|..||.
T Consensus 17 ~irC~~CG~ 25 (32)
T PF03604_consen 17 PIRCPECGH 25 (32)
T ss_dssp TSSBSSSS-
T ss_pred cEECCcCCC
Confidence 446666654
No 132
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=32.00 E-value=14 Score=29.26 Aligned_cols=26 Identities=12% Similarity=-0.052 Sum_probs=19.5
Q ss_pred CCCCccCCCCCCCCCCCchhHHHHHh
Q 037433 56 KDRAKAKQTTGPSFITSNPMLTHEDY 81 (181)
Q Consensus 56 gekp~~C~~C~k~F~~~~~L~~H~~~ 81 (181)
.+..|.|..|+|.|.-...+.+|+..
T Consensus 74 ~~~K~~C~lc~KlFkg~eFV~KHI~n 99 (214)
T PF04959_consen 74 DEDKWRCPLCGKLFKGPEFVRKHIFN 99 (214)
T ss_dssp SSEEEEE-SSS-EESSHHHHHHHHHH
T ss_pred cCCEECCCCCCcccCChHHHHHHHhh
Confidence 34468999999999998888888765
No 133
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=31.96 E-value=14 Score=27.14 Aligned_cols=9 Identities=11% Similarity=0.047 Sum_probs=4.2
Q ss_pred ccCCCCCCC
Q 037433 60 KAKQTTGPS 68 (181)
Q Consensus 60 ~~C~~C~k~ 68 (181)
|.|..|+..
T Consensus 124 ~~C~~C~~~ 132 (157)
T PF10263_consen 124 YRCPSCGRE 132 (157)
T ss_pred EEcCCCCCE
Confidence 345555443
No 134
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=31.10 E-value=28 Score=31.61 Aligned_cols=29 Identities=24% Similarity=0.557 Sum_probs=24.4
Q ss_pred CCcceeCCcccccCCChHHHHHhHHhhcC
Q 037433 28 AKRSYECTFCKRGFTNAQALGGHMNIHRK 56 (181)
Q Consensus 28 ~~kp~~C~~C~k~F~~~~~L~~H~~~H~g 56 (181)
..++-.|..||..|........||.+|..
T Consensus 415 ~~~pnqC~~CG~R~~~~ee~sk~md~H~d 443 (579)
T KOG2071|consen 415 KDSPNQCKSCGLRFDDSEERSKHMDIHDD 443 (579)
T ss_pred cCCcchhcccccccccchhhhhHhhhhhh
Confidence 35678999999999999999998887753
No 135
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=31.05 E-value=30 Score=17.76 Aligned_cols=11 Identities=27% Similarity=0.166 Sum_probs=7.9
Q ss_pred ccCCCCCCCCC
Q 037433 60 KAKQTTGPSFI 70 (181)
Q Consensus 60 ~~C~~C~k~F~ 70 (181)
..|+.||..|.
T Consensus 15 ~~Cp~CG~~F~ 25 (26)
T PF10571_consen 15 KFCPHCGYDFE 25 (26)
T ss_pred CcCCCCCCCCc
Confidence 46788887774
No 136
>PRK14873 primosome assembly protein PriA; Provisional
Probab=30.56 E-value=35 Score=31.71 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=14.9
Q ss_pred eCCcccccCCChHHHHHhHHhhcCCCCccCCCCC
Q 037433 33 ECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTG 66 (181)
Q Consensus 33 ~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~ 66 (181)
.|..||..+.-.. ....+..|.......|..||
T Consensus 385 ~C~~Cg~~~~C~~-C~~~L~~h~~~~~l~Ch~CG 417 (665)
T PRK14873 385 ACARCRTPARCRH-CTGPLGLPSAGGTPRCRWCG 417 (665)
T ss_pred EhhhCcCeeECCC-CCCceeEecCCCeeECCCCc
Confidence 5666665432221 12223334444455666665
No 137
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=30.55 E-value=20 Score=33.68 Aligned_cols=11 Identities=9% Similarity=-0.019 Sum_probs=6.4
Q ss_pred CCCCCCCCCCC
Q 037433 84 PRYIAPISSDT 94 (181)
Q Consensus 84 ~~~~c~~~~~~ 94 (181)
.+..||.|+-.
T Consensus 474 ~p~~Cp~Cgs~ 484 (730)
T COG1198 474 IPQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCCC
Confidence 45567777633
No 138
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=30.21 E-value=36 Score=32.02 Aligned_cols=15 Identities=7% Similarity=0.089 Sum_probs=11.1
Q ss_pred hcCCCCccCCCCCCC
Q 037433 54 HRKDRAKAKQTTGPS 68 (181)
Q Consensus 54 H~gekp~~C~~C~k~ 68 (181)
|....|..|+.||..
T Consensus 470 ~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 470 YQEPIPQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCCCCCCC
Confidence 445678899999854
No 139
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=29.53 E-value=29 Score=19.57 Aligned_cols=13 Identities=23% Similarity=0.797 Sum_probs=10.2
Q ss_pred ceeCCcccccCCC
Q 037433 31 SYECTFCKRGFTN 43 (181)
Q Consensus 31 p~~C~~C~k~F~~ 43 (181)
||.|..|++.|-.
T Consensus 12 ~f~C~~C~~~FC~ 24 (39)
T smart00154 12 GFKCRHCGNLFCG 24 (39)
T ss_pred CeECCccCCcccc
Confidence 7888888888754
No 140
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=29.45 E-value=6.2 Score=27.39 Aligned_cols=15 Identities=7% Similarity=0.073 Sum_probs=8.5
Q ss_pred CCCccCCCCCCCCCC
Q 037433 57 DRAKAKQTTGPSFIT 71 (181)
Q Consensus 57 ekp~~C~~C~k~F~~ 71 (181)
+|-|.|+.|+.--..
T Consensus 20 ~k~FtCp~Cghe~vs 34 (104)
T COG4888 20 PKTFTCPRCGHEKVS 34 (104)
T ss_pred CceEecCccCCeeee
Confidence 455667777654333
No 141
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=29.15 E-value=28 Score=24.68 Aligned_cols=10 Identities=10% Similarity=0.049 Sum_probs=4.7
Q ss_pred cCCCCCCCCC
Q 037433 61 AKQTTGPSFI 70 (181)
Q Consensus 61 ~C~~C~k~F~ 70 (181)
.|..|+..|.
T Consensus 73 ~C~~Cg~~~~ 82 (117)
T PRK00564 73 ECKDCSHVFK 82 (117)
T ss_pred EhhhCCCccc
Confidence 4555554443
No 142
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=29.09 E-value=26 Score=17.76 Aligned_cols=9 Identities=11% Similarity=-0.038 Sum_probs=5.0
Q ss_pred CCccCCCCC
Q 037433 58 RAKAKQTTG 66 (181)
Q Consensus 58 kp~~C~~C~ 66 (181)
.+|.|+.||
T Consensus 15 v~f~CPnCG 23 (24)
T PF07754_consen 15 VPFPCPNCG 23 (24)
T ss_pred ceEeCCCCC
Confidence 345666665
No 143
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=27.83 E-value=39 Score=28.92 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=14.0
Q ss_pred eCCcccccCCChHHHHHhHHh
Q 037433 33 ECTFCKRGFTNAQALGGHMNI 53 (181)
Q Consensus 33 ~C~~C~k~F~~~~~L~~H~~~ 53 (181)
.|.+|.+.|-....|.+|++.
T Consensus 222 ~C~FC~~~FYdDDEL~~HcR~ 242 (493)
T COG5236 222 LCIFCKIYFYDDDELRRHCRL 242 (493)
T ss_pred hhhhccceecChHHHHHHHHh
Confidence 366777777777777666653
No 144
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=27.72 E-value=39 Score=30.73 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=20.9
Q ss_pred CCCccCCCCCCCCCCCchhHHHHHhc
Q 037433 57 DRAKAKQTTGPSFITSNPMLTHEDYM 82 (181)
Q Consensus 57 ekp~~C~~C~k~F~~~~~L~~H~~~~ 82 (181)
.+|.+|..||.+|........||.+|
T Consensus 416 ~~pnqC~~CG~R~~~~ee~sk~md~H 441 (579)
T KOG2071|consen 416 DSPNQCKSCGLRFDDSEERSKHMDIH 441 (579)
T ss_pred CCcchhcccccccccchhhhhHhhhh
Confidence 46789999999999887777776653
No 145
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=27.50 E-value=77 Score=24.35 Aligned_cols=7 Identities=14% Similarity=0.524 Sum_probs=3.8
Q ss_pred CCCCCCC
Q 037433 86 YIAPISS 92 (181)
Q Consensus 86 ~~c~~~~ 92 (181)
|.||.|+
T Consensus 133 F~Cp~Cg 139 (176)
T COG1675 133 FTCPKCG 139 (176)
T ss_pred CCCCCCC
Confidence 5555554
No 146
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=27.40 E-value=50 Score=22.55 Aligned_cols=14 Identities=21% Similarity=0.237 Sum_probs=8.3
Q ss_pred CCccCCCCCCCCCC
Q 037433 58 RAKAKQTTGPSFIT 71 (181)
Q Consensus 58 kp~~C~~C~k~F~~ 71 (181)
+|=+|..||..|..
T Consensus 57 ~Pa~CkkCGfef~~ 70 (97)
T COG3357 57 RPARCKKCGFEFRD 70 (97)
T ss_pred cChhhcccCccccc
Confidence 45566666666654
No 147
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=26.85 E-value=21 Score=25.65 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=21.2
Q ss_pred CccCCCCCCCCCCCchhHHHHHh
Q 037433 59 AKAKQTTGPSFITSNPMLTHEDY 81 (181)
Q Consensus 59 p~~C~~C~k~F~~~~~L~~H~~~ 81 (181)
.|.|-.|.+.|.....|+.|.++
T Consensus 57 qfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 57 QFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred eeehhhhhhhhcchHHHHHHHhc
Confidence 47899999999999999999887
No 148
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=26.47 E-value=37 Score=28.92 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=45.1
Q ss_pred hHHHHhhhcCC-CcceeCCcccccC-CChHHHHHhHH-hhc-------------------CC--CCccCCCCCCCCCCCc
Q 037433 18 NEVKELDTSSA-KRSYECTFCKRGF-TNAQALGGHMN-IHR-------------------KD--RAKAKQTTGPSFITSN 73 (181)
Q Consensus 18 ~L~~h~~~h~~-~kp~~C~~C~k~F-~~~~~L~~H~~-~H~-------------------ge--kp~~C~~C~k~F~~~~ 73 (181)
.|.++++-.++ ...-.|-+|...+ .+++....|+. +|. .+ ..+.|-.|.|.|..+.
T Consensus 130 aLeqqQ~Eredt~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkn 209 (423)
T KOG2482|consen 130 ALEQQQKEREDTIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKN 209 (423)
T ss_pred HHHHHHHHhcCCeeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcH
Confidence 34455544433 2456799998654 45566666653 221 12 2468999999999999
Q ss_pred hhHHHHHh-cCCCC
Q 037433 74 PMLTHEDY-MNPRY 86 (181)
Q Consensus 74 ~L~~H~~~-~~~~~ 86 (181)
.|+.||+. .+++.
T Consensus 210 tLkeHMrkK~Hrri 223 (423)
T KOG2482|consen 210 TLKEHMRKKRHRRI 223 (423)
T ss_pred HHHHHHHhccCccc
Confidence 99999997 44443
No 149
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.26 E-value=29 Score=30.95 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=13.2
Q ss_pred eCCcccccCCChHHHHHhHHhhcCCCCccCCCCC
Q 037433 33 ECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTG 66 (181)
Q Consensus 33 ~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~ 66 (181)
.|..||....-.. ....+..|.......|..||
T Consensus 215 ~C~~Cg~~~~C~~-C~~~l~~h~~~~~l~Ch~Cg 247 (505)
T TIGR00595 215 LCRSCGYILCCPN-CDVSLTYHKKEGKLRCHYCG 247 (505)
T ss_pred EhhhCcCccCCCC-CCCceEEecCCCeEEcCCCc
Confidence 4555554332211 11223333334444555554
No 150
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=26.01 E-value=28 Score=30.79 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=13.3
Q ss_pred ccCCCCCCCCCCCchhHHHHHh
Q 037433 60 KAKQTTGPSFITSNPMLTHEDY 81 (181)
Q Consensus 60 ~~C~~C~k~F~~~~~L~~H~~~ 81 (181)
+.|.+|.|+|.+...|+.|...
T Consensus 293 lyC~vCnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENS 314 (508)
T ss_pred eEEeeccccccchHHHHhhHHH
Confidence 4566666666666666666543
No 151
>PLN02294 cytochrome c oxidase subunit Vb
Probab=25.99 E-value=19 Score=27.49 Aligned_cols=22 Identities=5% Similarity=-0.065 Sum_probs=15.6
Q ss_pred HhHHhhcCCCCccCCCCCCCCCC
Q 037433 49 GHMNIHRKDRAKAKQTTGPSFIT 71 (181)
Q Consensus 49 ~H~~~H~gekp~~C~~C~k~F~~ 71 (181)
..+..+.| +|++|+.||..|.-
T Consensus 132 ~Wf~L~kG-kp~RCpeCG~~fkL 153 (174)
T PLN02294 132 VWFWLEKG-KSFECPVCTQYFEL 153 (174)
T ss_pred EEEEecCC-CceeCCCCCCEEEE
Confidence 34455555 78899999988764
No 152
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=25.16 E-value=36 Score=18.89 Aligned_cols=9 Identities=33% Similarity=0.789 Sum_probs=5.6
Q ss_pred eCCcccccC
Q 037433 33 ECTFCKRGF 41 (181)
Q Consensus 33 ~C~~C~k~F 41 (181)
.|..||+.|
T Consensus 3 ~C~~Cg~~Y 11 (36)
T PF05191_consen 3 ICPKCGRIY 11 (36)
T ss_dssp EETTTTEEE
T ss_pred CcCCCCCcc
Confidence 466666665
No 153
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=24.96 E-value=27 Score=24.53 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=7.1
Q ss_pred eeCCcccccCCCh
Q 037433 32 YECTFCKRGFTNA 44 (181)
Q Consensus 32 ~~C~~C~k~F~~~ 44 (181)
+.|..|++.|...
T Consensus 71 ~~C~~Cg~~~~~~ 83 (113)
T PF01155_consen 71 ARCRDCGHEFEPD 83 (113)
T ss_dssp EEETTTS-EEECH
T ss_pred EECCCCCCEEecC
Confidence 5666666666443
No 154
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=24.49 E-value=40 Score=23.26 Aligned_cols=24 Identities=13% Similarity=-0.083 Sum_probs=19.7
Q ss_pred ccC----CCCCCCCCCCchhHHHHHhcC
Q 037433 60 KAK----QTTGPSFITSNPMLTHEDYMN 83 (181)
Q Consensus 60 ~~C----~~C~k~F~~~~~L~~H~~~~~ 83 (181)
|.| ..|+..+.+...+++|.+..+
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~H 108 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEH 108 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhc
Confidence 688 889888888888999987643
No 155
>PHA00626 hypothetical protein
Probab=24.24 E-value=39 Score=20.91 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=13.7
Q ss_pred CcceeCCcccccCCChH
Q 037433 29 KRSYECTFCKRGFTNAQ 45 (181)
Q Consensus 29 ~kp~~C~~C~k~F~~~~ 45 (181)
...|+|..||..|+...
T Consensus 21 snrYkCkdCGY~ft~~~ 37 (59)
T PHA00626 21 SDDYVCCDCGYNDSKDA 37 (59)
T ss_pred CcceEcCCCCCeechhh
Confidence 45799999999887654
No 156
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=23.77 E-value=53 Score=19.67 Aligned_cols=9 Identities=11% Similarity=0.206 Sum_probs=4.1
Q ss_pred cCCCCCCCC
Q 037433 61 AKQTTGPSF 69 (181)
Q Consensus 61 ~C~~C~k~F 69 (181)
+|..|+..|
T Consensus 30 ~C~~Cgh~w 38 (55)
T PF14311_consen 30 KCPKCGHEW 38 (55)
T ss_pred ECCCCCCee
Confidence 455554433
No 157
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=23.73 E-value=85 Score=26.09 Aligned_cols=25 Identities=20% Similarity=0.531 Sum_probs=21.8
Q ss_pred CcceeCCcccccCCChHHHHHhHHh
Q 037433 29 KRSYECTFCKRGFTNAQALGGHMNI 53 (181)
Q Consensus 29 ~kp~~C~~C~k~F~~~~~L~~H~~~ 53 (181)
..-|.|.+|-+-|.....|.+|+..
T Consensus 46 ~~lyiCe~Clky~~~~~~l~~H~~~ 70 (290)
T PLN03238 46 TKLYICEYCLKYMRKKKSLLRHLAK 70 (290)
T ss_pred CeEEEcCCCcchhCCHHHHHHHHHh
Confidence 4579999999999999999999874
No 158
>KOG0402 consensus 60S ribosomal protein L37 [Translation, ribosomal structure and biogenesis]
Probab=23.70 E-value=14 Score=24.72 Aligned_cols=30 Identities=17% Similarity=0.353 Sum_probs=18.1
Q ss_pred ceeCCcccccCCChHHHHHhHHhhcCCCCccCCCCCCCCC
Q 037433 31 SYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQTTGPSFI 70 (181)
Q Consensus 31 p~~C~~C~k~F~~~~~L~~H~~~H~gekp~~C~~C~k~F~ 70 (181)
.|.|.+||+.-....+. --|.|..|.+.|.
T Consensus 36 ky~CsfCGK~~vKR~Av----------GiW~C~~C~kv~a 65 (92)
T KOG0402|consen 36 KYTCSFCGKKTVKRKAV----------GIWKCGSCKKVVA 65 (92)
T ss_pred hhhhhhcchhhhhhhce----------eEEecCCccceec
Confidence 47899998743222221 1357888877765
No 159
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=23.64 E-value=21 Score=20.76 Aligned_cols=11 Identities=0% Similarity=-0.221 Sum_probs=6.2
Q ss_pred CCCccCCCCCC
Q 037433 57 DRAKAKQTTGP 67 (181)
Q Consensus 57 ekp~~C~~C~k 67 (181)
...|+|..|.+
T Consensus 35 ~~~~~C~~C~~ 45 (46)
T PF12760_consen 35 RGRYRCKACRK 45 (46)
T ss_pred CCeEECCCCCC
Confidence 34566666653
No 160
>cd00924 Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly.
Probab=23.45 E-value=23 Score=24.44 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=16.3
Q ss_pred HhHHhhcCCCCccCCCCCCCCCC
Q 037433 49 GHMNIHRKDRAKAKQTTGPSFIT 71 (181)
Q Consensus 49 ~H~~~H~gekp~~C~~C~k~F~~ 71 (181)
..+..+.+ ++++|..||.-|.-
T Consensus 70 ~W~~l~~g-~~~rC~eCG~~fkL 91 (97)
T cd00924 70 IWMWLEKG-KPKRCPECGHVFKL 91 (97)
T ss_pred EEEEEeCC-CceeCCCCCcEEEE
Confidence 34556666 79999999987753
No 161
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.17 E-value=70 Score=29.74 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=43.0
Q ss_pred CCCCCCCchhHHHHhhhcCCCcceeCCccc------ccCCChHHHHHhHHhhcCCCCccCC--CCC-CCCCCCchhHHHH
Q 037433 9 GSDHSSSDENEVKELDTSSAKRSYECTFCK------RGFTNAQALGGHMNIHRKDRAKAKQ--TTG-PSFITSNPMLTHE 79 (181)
Q Consensus 9 c~~sf~~~s~L~~h~~~h~~~kp~~C~~C~------k~F~~~~~L~~H~~~H~gekp~~C~--~C~-k~F~~~~~L~~H~ 79 (181)
|.+.|-....|.+|++.+. |.|.+|. ..|..-..|..|-+ +.-|.|. .|. +.|.....+..++
T Consensus 188 C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR----~~HflCE~~~C~~~~f~~~~~~ei~l 259 (669)
T KOG2231|consen 188 CHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFR----KGHFLCEEEFCRTKKFYVAFELEIEL 259 (669)
T ss_pred hhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhh----hcCccccccccccceeeehhHHHHHH
Confidence 5566777777777776443 5677763 34566666666655 4456775 554 4455554555555
Q ss_pred H-----h-cCCCCCCC
Q 037433 80 D-----Y-MNPRYIAP 89 (181)
Q Consensus 80 ~-----~-~~~~~~c~ 89 (181)
+ + +++.|.|.
T Consensus 260 k~~~~~~~~e~~~~~~ 275 (669)
T KOG2231|consen 260 KAHNRFIQHEKCYICR 275 (669)
T ss_pred HhhccccchheeccCC
Confidence 5 3 56666553
No 162
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=23.04 E-value=32 Score=19.69 Aligned_cols=14 Identities=21% Similarity=0.785 Sum_probs=8.8
Q ss_pred cceeCCcccccCCC
Q 037433 30 RSYECTFCKRGFTN 43 (181)
Q Consensus 30 kp~~C~~C~k~F~~ 43 (181)
-|+.|..|++.|=.
T Consensus 12 ~~~~C~~C~~~FC~ 25 (43)
T PF01428_consen 12 LPFKCKHCGKSFCL 25 (43)
T ss_dssp SHEE-TTTS-EE-T
T ss_pred CCeECCCCCcccCc
Confidence 48899999988854
No 163
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=23.02 E-value=83 Score=26.86 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=23.8
Q ss_pred CcceeCCcccccCCChHHHHHhHHh-hcCCCC-ccCCCCC
Q 037433 29 KRSYECTFCKRGFTNAQALGGHMNI-HRKDRA-KAKQTTG 66 (181)
Q Consensus 29 ~kp~~C~~C~k~F~~~~~L~~H~~~-H~gekp-~~C~~C~ 66 (181)
...|.|.+|++.-.+...+..|... |.--.+ ..|++|+
T Consensus 77 ~qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~ 116 (381)
T KOG1280|consen 77 PQSFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCA 116 (381)
T ss_pred cccccCCcccccccchhHHHHHhhhcCcccCcceeeeccc
Confidence 4578888888766666667777654 433222 2566665
No 164
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=22.83 E-value=31 Score=24.31 Aligned_cols=9 Identities=11% Similarity=-0.208 Sum_probs=4.1
Q ss_pred cCCCCCCCC
Q 037433 61 AKQTTGPSF 69 (181)
Q Consensus 61 ~C~~C~k~F 69 (181)
.|..|+..|
T Consensus 72 ~C~~Cg~~~ 80 (114)
T PRK03681 72 WCETCQQYV 80 (114)
T ss_pred EcccCCCee
Confidence 444554433
No 165
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=22.55 E-value=56 Score=19.55 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=16.0
Q ss_pred CcceeCCc--ccccCCChHHHHHhHHhhcCCCCccCCC
Q 037433 29 KRSYECTF--CKRGFTNAQALGGHMNIHRKDRAKAKQT 64 (181)
Q Consensus 29 ~kp~~C~~--C~k~F~~~~~L~~H~~~H~gekp~~C~~ 64 (181)
..+..|.. |...+. +..|..|....-..++..|..
T Consensus 7 ~~~v~C~~~cc~~~i~-r~~l~~H~~~~C~~~~v~C~~ 43 (60)
T PF02176_consen 7 FRPVPCPNGCCNEMIP-RKELDDHLENECPKRPVPCPY 43 (60)
T ss_dssp TSEEE-TT--S-BEEE-CCCHHHHHHTTSTTSEEE-SS
T ss_pred CCEeeCCCCCccccee-HHHHHHHHHccCCCCcEECCC
Confidence 34455655 333333 334666666444445555655
No 166
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=22.36 E-value=40 Score=24.61 Aligned_cols=11 Identities=9% Similarity=0.139 Sum_probs=5.8
Q ss_pred CccCCCCCCCC
Q 037433 59 AKAKQTTGPSF 69 (181)
Q Consensus 59 p~~C~~C~k~F 69 (181)
.|.|..|+..+
T Consensus 112 ~y~C~~C~~~~ 122 (146)
T smart00731 112 PYRCTGCGQRY 122 (146)
T ss_pred EEECCCCCCCC
Confidence 45565565443
No 167
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=21.64 E-value=60 Score=28.42 Aligned_cols=13 Identities=8% Similarity=-0.084 Sum_probs=6.7
Q ss_pred CccCCCCCCCCCC
Q 037433 59 AKAKQTTGPSFIT 71 (181)
Q Consensus 59 p~~C~~C~k~F~~ 71 (181)
-|+|+.|+..+..
T Consensus 367 g~rC~kCg~~~~~ 379 (421)
T COG1571 367 GFRCKKCGTRARE 379 (421)
T ss_pred CcccccccccCCc
Confidence 4555555554443
No 168
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=21.62 E-value=1e+02 Score=25.17 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=15.2
Q ss_pred hhHHHHhhhcCCC-----cceeCCcccccC
Q 037433 17 ENEVKELDTSSAK-----RSYECTFCKRGF 41 (181)
Q Consensus 17 s~L~~h~~~h~~~-----kp~~C~~C~k~F 41 (181)
.||....+.+... +-|.|..|...+
T Consensus 93 ~Nlrm~d~a~~~~ip~~drqFaC~~Cd~~W 122 (278)
T PF15135_consen 93 ENLRMFDDAQENLIPSVDRQFACSSCDHMW 122 (278)
T ss_pred HHHHHhhhhhhccccccceeeeccccchHH
Confidence 4555555444443 679999887543
No 169
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.59 E-value=47 Score=20.73 Aligned_cols=12 Identities=17% Similarity=0.064 Sum_probs=6.5
Q ss_pred CCCccCCCCCCC
Q 037433 57 DRAKAKQTTGPS 68 (181)
Q Consensus 57 ekp~~C~~C~k~ 68 (181)
.+-|.|+.||..
T Consensus 44 ~r~~~C~~Cg~~ 55 (69)
T PF07282_consen 44 GRVFTCPNCGFE 55 (69)
T ss_pred cceEEcCCCCCE
Confidence 345566666543
No 170
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=21.33 E-value=23 Score=18.71 Aligned_cols=10 Identities=30% Similarity=1.102 Sum_probs=6.1
Q ss_pred eeCCcccccC
Q 037433 32 YECTFCKRGF 41 (181)
Q Consensus 32 ~~C~~C~k~F 41 (181)
|.|..|++.|
T Consensus 1 ~sCiDC~~~F 10 (28)
T PF08790_consen 1 FSCIDCSKDF 10 (28)
T ss_dssp EEETTTTEEE
T ss_pred CeeecCCCCc
Confidence 3466666666
No 171
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=20.58 E-value=17 Score=33.97 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=36.3
Q ss_pred CCcccccCCChHHHHHhHHhhcCCCCc-cCCCCCCCCCCCchhHHHHHhcCCCCCCCCCCC
Q 037433 34 CTFCKRGFTNAQALGGHMNIHRKDRAK-AKQTTGPSFITSNPMLTHEDYMNPRYIAPISSD 93 (181)
Q Consensus 34 C~~C~k~F~~~~~L~~H~~~H~gekp~-~C~~C~k~F~~~~~L~~H~~~~~~~~~c~~~~~ 93 (181)
|+.||-.|+-...|..- +.+|..+.| .|+.|-+-+....+ .|.|..+..|+.|+-
T Consensus 93 Ct~CGPr~~i~~~lpyd-r~~t~m~~f~~C~~C~~ey~~p~~----rr~h~~~~~C~~Cgp 148 (711)
T TIGR00143 93 CTHCGPRFTIIEALPYD-RENTSMADFPLCPDCAKEYKDPLD----RRFHAQPIACPRCGP 148 (711)
T ss_pred ccCCCCCeEEeecCCCC-CCCcCCCCCcCCHHHHHHhcCCcc----ccCCCCCccCCCCCc
Confidence 88899888776665432 345656666 58888776655533 344666777888873
No 172
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=20.57 E-value=84 Score=19.35 Aligned_cols=11 Identities=9% Similarity=-0.139 Sum_probs=5.5
Q ss_pred CCCccCCCCCC
Q 037433 57 DRAKAKQTTGP 67 (181)
Q Consensus 57 ekp~~C~~C~k 67 (181)
...|.|+.||-
T Consensus 12 ~v~~~Cp~cGi 22 (55)
T PF13824_consen 12 HVNFECPDCGI 22 (55)
T ss_pred ccCCcCCCCCC
Confidence 34455555553
Done!