BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037435
(583 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
Length = 289
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 124/265 (46%), Gaps = 12/265 (4%)
Query: 40 IVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVI 99
+ KAT H+ + PK+KH+ +++ + ++ SL +R + SW V K+LI
Sbjct: 26 VCKATTHEIMGPKKKHLDYLIQC--TNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITT 82
Query: 100 HRALREVDHSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECF 159
H + + E I Y R +FNLS+F D+S +D S +IR Y+ YL E+ +
Sbjct: 83 HHLMVYGN----ERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 138
Query: 160 RILRYDVEKSHMGSGRXXXXXXXXXXXXXX----XXXXXXXGCKPQGAALYNNLIHYALS 215
R + +D K G+ L N +I+ A
Sbjct: 139 RQVAFDFTKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFM 198
Query: 216 IIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFEICRELD 275
++ ++++L+ + +GI+ L++KYF+M ++ L+IY+K ++ ++ ++ ++
Sbjct: 199 LLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVG 258
Query: 276 FGRGQKYIKIEKPPASFMTAMEDYV 300
RG + + P+S + A+E ++
Sbjct: 259 IDRGD-IPDLSQAPSSLLDALEQHL 282
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain
pdb|3ZYK|B Chain B, Structure Of Calm (Picalm) Anth Domain
Length = 296
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 124/265 (46%), Gaps = 12/265 (4%)
Query: 40 IVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVI 99
+ KAT H+ + PK+KH+ +++ + ++ SL +R + SW V K+LI
Sbjct: 33 VCKATTHEIMGPKKKHLDYLIQC--TNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITT 89
Query: 100 HRALREVDHSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECF 159
H + + E I Y R +FNLS+F D+S +D S +IR Y+ YL E+ +
Sbjct: 90 HHLMVYGN----ERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 145
Query: 160 RILRYDVEKSHMGSGRXXXXXXXXXXXXXX----XXXXXXXGCKPQGAALYNNLIHYALS 215
R + +D K G+ L N +I+ A
Sbjct: 146 RQVAFDFTKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFM 205
Query: 216 IIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFEICRELD 275
++ ++++L+ + +GI+ L++KYF+M ++ L+IY+K ++ ++ ++ ++
Sbjct: 206 LLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVG 265
Query: 276 FGRGQKYIKIEKPPASFMTAMEDYV 300
RG + + P+S + A+E ++
Sbjct: 266 IDRGD-IPDLSQAPSSLLDALEQHL 289
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 11/244 (4%)
Query: 40 IVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVI 99
+ KAT H+ + PK+KH+ +++ + ++ SL +R + SW V K+LI
Sbjct: 33 VCKATTHEIMGPKKKHLDYLIQC--TNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITT 89
Query: 100 HRALREVDHSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECF 159
H + + E I Y R +FNLS+F D+S +D S +IR Y+ YL E+ +
Sbjct: 90 HHLMVYGN----ERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 145
Query: 160 RILRYDVEKSHMGSGRXXXXXXXXXXXXXX----XXXXXXXGCKPQGAALYNNLIHYALS 215
R + +D K G+ L N +I+ A
Sbjct: 146 RQVAFDFTKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFM 205
Query: 216 IIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFEICRELD 275
++ ++++L+ + +GI+ L++KYF+M ++ L+IY+K ++ ++ ++ ++
Sbjct: 206 LLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVG 265
Query: 276 FGRG 279
RG
Sbjct: 266 IDRG 269
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain
pdb|3ZYL|B Chain B, Structure Of A Truncated Calm (Picalm) Anth Domain
Length = 271
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 11/244 (4%)
Query: 40 IVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVI 99
+ KAT H+ + PK+KH+ +++ + ++ SL +R + SW V K+LI
Sbjct: 33 VCKATTHEIMGPKKKHLDYLIQC--TNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITT 89
Query: 100 HRALREVDHSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECF 159
H + + E I Y R +FNLS+F D+S +D S +IR Y+ YL E+ +
Sbjct: 90 HHLMVYGN----ERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 145
Query: 160 RILRYDVEKSHMGSGRXXXXXXXXXXXXXX----XXXXXXXGCKPQGAALYNNLIHYALS 215
R + +D K G+ L N +I+ A
Sbjct: 146 RQVAFDFTKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFM 205
Query: 216 IIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFEICRELD 275
++ ++++L+ + +GI+ L++KYF+M ++ L+IY+K ++ ++ ++ ++
Sbjct: 206 LLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVG 265
Query: 276 FGRG 279
RG
Sbjct: 266 IDRG 269
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
pdb|1HX8|B Chain B, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
Length = 299
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 127/285 (44%), Gaps = 28/285 (9%)
Query: 34 KGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVAL 93
+GL ++ KAT + + PK+KH+ ++ A+ P + + L +R ++ +W V
Sbjct: 22 QGLAKSVCKATTEECIGPKKKHLDYLVHC--ANEPNVSIPHLANLLIER-SQNANWVVVY 78
Query: 94 KTLIVIHRALREVDHSFCEELINYSRGRALMFNLSHFRDESSP-----------VAWDHS 142
K+LI H + + F + L + + FNLS F D+ + + +D S
Sbjct: 79 KSLITTHHLMAYGNERFMQYLASSNS----TFNLSSFLDKGTVQDGGMGVPGGRMGYDMS 134
Query: 143 AWIRNYALYLEERVECFRILRYDV-------EKSHMGSGRXXXXXXXXXXXXXXXXXXXX 195
+IR YA YL E+ +R + +D E+ + S
Sbjct: 135 PFIRRYAKYLNEKSLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLE 194
Query: 196 XGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYR 255
C Q L N +I+ + ++ + ++L+ DGI+ L++KYF+M + A L++Y+
Sbjct: 195 FDC--QSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDALDLYK 252
Query: 256 KSESQADSLTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYV 300
K + D + ++ + +G + K P+S + A+E ++
Sbjct: 253 KFLVRMDRVGEFLKVAENVGIDKGD-IPDLTKAPSSLLDALEQHL 296
>pdb|2H4V|A Chain A, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
pdb|2H4V|B Chain B, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
Length = 320
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 292 FMTAMEDYVKVAPHIFMLQCTAFSPDFSKTKRCNGDQNVA 331
+ +M+ +VK ++ FS DF + +RC D N+
Sbjct: 19 YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNIT 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,913,163
Number of Sequences: 62578
Number of extensions: 539443
Number of successful extensions: 972
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 955
Number of HSP's gapped (non-prelim): 15
length of query: 583
length of database: 14,973,337
effective HSP length: 104
effective length of query: 479
effective length of database: 8,465,225
effective search space: 4054842775
effective search space used: 4054842775
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)