Query 037435
Match_columns 583
No_of_seqs 216 out of 559
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 12:13:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0251 Clathrin assembly prot 100.0 1E-88 2.2E-93 736.9 30.8 462 13-522 1-473 (491)
2 PF07651 ANTH: ANTH domain; I 100.0 1.1E-64 2.5E-69 517.0 22.4 263 34-302 2-279 (280)
3 KOG0980 Actin-binding protein 100.0 2.2E-39 4.8E-44 359.9 12.9 253 33-301 4-275 (980)
4 cd03564 ANTH_AP180_CALM ANTH d 100.0 2.5E-31 5.5E-36 240.1 12.6 117 36-159 1-117 (117)
5 smart00273 ENTH Epsin N-termin 99.9 8.4E-28 1.8E-32 219.7 12.1 126 34-165 1-126 (127)
6 PF01417 ENTH: ENTH domain; I 99.3 7.1E-12 1.5E-16 114.6 11.1 118 33-157 1-120 (125)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.2 1.4E-10 3E-15 104.2 10.3 112 37-156 2-113 (115)
8 cd03571 ENTH_epsin ENTH domain 99.0 1.6E-09 3.5E-14 99.5 11.4 115 35-156 1-116 (123)
9 KOG2056 Equilibrative nucleosi 98.6 9.1E-08 2E-12 100.6 9.0 118 32-157 18-137 (336)
10 cd03572 ENTH_epsin_related ENT 97.9 6.7E-05 1.5E-09 69.1 10.3 112 39-156 5-117 (122)
11 KOG2057 Predicted equilibrativ 97.5 0.00045 9.8E-09 72.3 9.4 125 32-161 20-152 (499)
12 cd03568 VHS_STAM VHS domain fa 95.4 0.1 2.2E-06 49.4 9.3 76 36-114 1-76 (144)
13 cd03569 VHS_Hrs_Vps27p VHS dom 95.4 0.12 2.7E-06 48.7 9.8 78 34-114 3-80 (142)
14 PF00790 VHS: VHS domain; Int 95.2 0.12 2.6E-06 48.3 9.2 79 33-114 3-81 (140)
15 smart00288 VHS Domain present 94.9 0.18 3.9E-06 46.9 9.3 75 37-114 2-76 (133)
16 cd03567 VHS_GGA VHS domain fam 94.9 0.21 4.6E-06 47.1 9.7 76 36-114 2-77 (139)
17 cd03565 VHS_Tom1 VHS domain fa 94.8 0.22 4.8E-06 46.9 9.8 77 36-114 2-78 (141)
18 cd03561 VHS VHS domain family; 94.3 0.29 6.3E-06 45.4 9.3 75 37-114 2-76 (133)
19 KOG0414 Chromosome condensatio 81.2 23 0.0005 43.7 13.7 171 75-276 360-573 (1251)
20 KOG2199 Signal transducing ada 79.1 9.8 0.00021 41.8 8.9 79 33-114 6-84 (462)
21 KOG1087 Cytosolic sorting prot 59.1 44 0.00094 37.9 8.9 75 36-113 2-76 (470)
22 KOG3520 Predicted guanine nucl 54.3 48 0.0011 41.1 8.7 69 209-283 447-529 (1167)
23 KOG3598 Thyroid hormone recept 53.1 10 0.00022 47.5 2.9 20 253-272 1660-1679(2220)
24 PF02042 RWP-RK: RWP-RK domain 40.7 26 0.00057 27.9 2.6 34 235-277 9-42 (52)
25 KOG1086 Cytosolic sorting prot 34.1 1.3E+02 0.0028 33.9 7.3 82 33-117 6-87 (594)
26 KOG1915 Cell cycle control pro 32.5 76 0.0017 36.2 5.4 66 178-272 150-215 (677)
27 PTZ00473 Plasmodium Vir superf 25.9 9.7E+02 0.021 26.9 13.1 64 36-107 6-76 (420)
28 PF02184 HAT: HAT (Half-A-TPR) 24.7 56 0.0012 23.6 1.8 26 247-272 3-28 (32)
29 KOG1465 Translation initiation 23.5 2.8E+02 0.0061 30.0 7.4 79 72-157 11-89 (353)
30 PF07990 NABP: Nucleic acid bi 23.0 2.2E+02 0.0048 31.5 6.8 23 509-532 247-269 (385)
31 PF14131 DUF4298: Domain of un 23.0 3E+02 0.0065 24.0 6.4 45 219-275 3-50 (90)
32 KOG2956 CLIP-associating prote 22.6 2.8E+02 0.0061 31.6 7.5 95 184-280 284-383 (516)
33 PF11040 DGF-1_C: Dispersed ge 20.5 54 0.0012 28.2 1.2 39 465-503 15-60 (87)
34 KOG1883 Cofactor required for 20.3 1.3E+02 0.0029 37.5 4.8 27 509-535 1408-1439(1517)
No 1
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-88 Score=736.90 Aligned_cols=462 Identities=34% Similarity=0.550 Sum_probs=351.5
Q ss_pred HHHHhhcccchhhhhhccCCCchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHH
Q 037435 13 KAIAALKDTTKVGLVNLNSENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVA 92 (583)
Q Consensus 13 ka~GalKD~tsiglAkv~~~~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiVa 92 (583)
+|+|++||++|||+|+|.+.++++++||+|||+|+++|||+|||+.|+.+|+.++ +++.+|+++|++||.+||||+||
T Consensus 1 ~~~gaiKD~~s~~~a~v~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~--~~i~~~v~aLs~Rl~~TrnW~VA 78 (491)
T KOG0251|consen 1 RAIGAIKDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSP--ASIPSCVHALSERLNKTRNWTVA 78 (491)
T ss_pred CCccccchhhhhHHHHhhhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCc--ccHHHHHHHHHHHhCCCcceeeh
Confidence 4789999999999999998899999999999999999999999999999999875 89999999999999999999999
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHhhcCCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhccccccc---
Q 037435 93 LKTLIVIHRALREVDHSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECFRILRYDVEKS--- 169 (583)
Q Consensus 93 lKtLIllHrLLreG~p~f~eell~y~r~r~~iL~Ls~F~D~Ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~d~~~~--- 169 (583)
+|+||||||||++|++.|.++++. +.++|+|++|+|++++.+|||++|||+|++||+||+.||+.+++|++..
T Consensus 79 lKsLIliH~ll~~G~~~f~~~l~~----~~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~ 154 (491)
T KOG0251|consen 79 LKALILIHRLLKEGDPSFEQELLS----RNLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRG 154 (491)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHh----cccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCc
Confidence 999999999999999999887753 3378999999999999999999999999999999999999999998854
Q ss_pred --CCccCCCC-HHHHHhhHHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhh
Q 037435 170 --HMGSGRLS-IPDLLDQLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHD 246 (583)
Q Consensus 170 --~~r~r~l~-~e~LL~~L~~LQ~LLdrlL~crP~g~a~~N~lil~Al~llvkDSf~LY~~indgii~LLe~fFeM~k~d 246 (583)
....+++. .+.+|+.+++||.||+++|+|+|.+.+++|+||++||.+||+|||+||++||+||++|||+||+|+++|
T Consensus 155 ~~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekffem~~~~ 234 (491)
T KOG0251|consen 155 KEKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFFEMSKHD 234 (491)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 23345555 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhcccccccccccCCCCChhhHHHHHHHHHhCCcccccccccCCCCcccccccCC
Q 037435 247 AVRTLEIYRKSESQADSLTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYVKVAPHIFMLQCTAFSPDFSKTKRCNG 326 (583)
Q Consensus 247 a~kaLeiYkRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~~L~~LEEylrda~~~~~~~~~~~~~~~~~~~~~~~ 326 (583)
|+++|+|||||.+|+++|.+||++||++|+.|+++||+|+++|.++|++|||||++.+..+.+.... ++ . ....
T Consensus 235 a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~~~~~~-~~-~----~~~~ 308 (491)
T KOG0251|consen 235 AIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKAKTAKV-SP-V----SQFS 308 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhccccccccccc-CC-c----cccc
Confidence 9999999999999999999999999999999999999999999999999999999976433221100 00 0 0000
Q ss_pred CchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCccchhhhcccccccccchhccchhhhhhhccCccccCCCC
Q 037435 327 DQNVARIEAPKLDDAPGANVSTDRQDSDQPGAA--PEPASNDRREAVATQQLIDTEDTQQRTDQSEAAASQQITDLLGLE 404 (583)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~l~ 404 (583)
. +....+.....++ +.+.++ +-++. +..+.+ ..|.+.+. .|..+++ ....++|++.+.
T Consensus 309 ~------~~~~~e~~~~~~~-~~e~~~-~i~~~~~~~~~~~---~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~ 368 (491)
T KOG0251|consen 309 T------DFESSESSSRLEE-PEEQKE-VIEELQEPLEQEE---DQPSPNSE-----NPEANDQ----AGIATDDLLLQP 368 (491)
T ss_pred c------chhcccccccccc-chhhhh-ccccccccccccc---cCCCCCCC-----Ccccccc----ccccCcchhhcc
Confidence 0 0000000000000 000000 00101 111100 00000000 0000010 111223666666
Q ss_pred ccccccchhcccccceeecccCCCCCCCCccccccccCccchhhhccCCCCcchhhccccccCCccchhccccchHHHHH
Q 037435 405 ELTQQVSEMDEKNSLALAIVTSENQPNSENSFTMACQTMSWELALVTAPSSNVAAVAGSKLAGGLDKLTLDSLYDDAIAR 484 (583)
Q Consensus 405 ~~~~~~~~~e~~n~lala~~~~~~~~~~~~~~~~~~~~~~WElaLV~~~s~~~~~~~~~~l~GG~d~l~Ld~~Y~~~~~~ 484 (583)
+..+..++.+..|+||||+ ++ + ....+|||+++|+..++.....+..++|||| +||||| ++.++
T Consensus 369 ~~~~~~~~~~~~~~l~~~~-~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~-~~~~~ 432 (491)
T KOG0251|consen 369 DNLPMFSASTAPNALALAL-PF-P----------NHTGSGWGLPAATPDSAAWETATMQALAGGL---TLNSMV-NNPFR 432 (491)
T ss_pred cCCCccccccCcchhhcCC-CC-C----------CCCCCccccccCCcchhhhhhcccccccccc---eecccc-CCchh
Confidence 6677899999999999999 32 1 2246789999998776654322223899999 999999 88887
Q ss_pred HhhhcCCCCCCCCC---CCCCCCCCcCCCCCccccCCCCCC
Q 037435 485 NAKRNSSNTVGQQV---GSNPFEADSLNQDPFSASSGVTPP 522 (583)
Q Consensus 485 ~~~~~~~~~~g~~~---~p~P~~~~~~~~DPFaaS~~v~PP 522 (583)
+.++.+.++.|++. .|++......+.+||+.|..+++|
T Consensus 433 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~a~~ 473 (491)
T KOG0251|consen 433 ATVQTAPQGQGSQPFGAQPMPAMAALPQPYPVGQPPFPAQL 473 (491)
T ss_pred hhccccccccCCCccccCCchhhhcccccCCCCCCCCcCcc
Confidence 76544333335332 231111112344888888888887
No 2
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=100.00 E-value=1.1e-64 Score=516.97 Aligned_cols=263 Identities=43% Similarity=0.743 Sum_probs=215.4
Q ss_pred chHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHH
Q 037435 34 KGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEE 113 (583)
Q Consensus 34 ~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~ee 113 (583)
+++++||+|||+|+++|||+||||+||.+|++ +.+++.|+|+|.+|+.+++||+|+||+||++|||||||++.|.++
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~---~~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G~~~~~~~ 78 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSS---PESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDGHPSFLQE 78 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCST---TS-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS-CHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcC---CccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 58999999999999999999999999999988 267899999999999999999999999999999999999999988
Q ss_pred HHHHhhcCCCccccccccC--CCCCCCcchhHHHHHHHHHHHHHHHHHhhhccc---ccccC---------Ccc-CCCCH
Q 037435 114 LINYSRGRALMFNLSHFRD--ESSPVAWDHSAWIRNYALYLEERVECFRILRYD---VEKSH---------MGS-GRLSI 178 (583)
Q Consensus 114 ll~y~r~r~~iL~Ls~F~D--~Ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~d---~~~~~---------~r~-r~l~~ 178 (583)
++.+ +.+++++.++++ ++++.+|+|+.|||+|++||++|+.||+.++.+ ++.+. ... ..+++
T Consensus 79 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL~~rl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (280)
T PF07651_consen 79 LLRY---NRRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYLDERLSFHRKLKIDPGNLEREEEGSLVSRDDPNSRKSLDI 155 (280)
T ss_dssp HHHT---T-----TT---T---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS----CCCS--S-----TTSHCC-C--H
T ss_pred HHHc---ccchhhhccccccccCCccccchhHHHHHHHHHHHHHHHHHHHccccccccccccccccccccCccccccccH
Confidence 7654 334666666666 677889999999999999999999999999877 44331 112 36778
Q ss_pred HHHHhhHHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHH
Q 037435 179 PDLLDQLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSE 258 (583)
Q Consensus 179 e~LL~~L~~LQ~LLdrlL~crP~g~a~~N~lil~Al~llvkDSf~LY~~indgii~LLe~fFeM~k~da~kaLeiYkRf~ 258 (583)
++||++++.||++|+++++|+|.+++++|.|+++||++||+|||+||+.+|+||++|+++||+|++.||.++++||+||.
T Consensus 156 ~~lL~~l~~lq~ll~~ll~~~~~~~~~~n~~~~~a~~lli~Ds~~lY~~i~~~i~~Ll~~~~~m~~~~a~~~~~i~~rf~ 235 (280)
T PF07651_consen 156 DDLLDQLPKLQRLLDRLLDCRPRGAALNNQCVQAAFRLLIKDSFQLYKFINEGIINLLERFFEMSKPDAEKLLGIYKRFA 235 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---GGG--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhhhcccccccccccCCCCChhhHHHHHHHHHh
Q 037435 259 SQADSLTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYVKV 302 (583)
Q Consensus 259 kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~~L~~LEEylrd 302 (583)
+|+++|++||++|++++++++++||+|+++|++|+.+|||||+|
T Consensus 236 ~q~~~L~~Fy~~c~~~~~~~~~~iP~l~~~p~~~l~~lEe~l~~ 279 (280)
T PF07651_consen 236 KQTEELKEFYEWCKSLGYFRSLEIPSLPHIPPSFLQALEEYLRD 279 (280)
T ss_dssp HHHHHHHHHHHHHHHCT--GGG-S--GGGS-CHHCCCCCHHHHC
T ss_pred HHHHHHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999988999999999999999999997
No 3
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=100.00 E-value=2.2e-39 Score=359.91 Aligned_cols=253 Identities=19% Similarity=0.244 Sum_probs=216.8
Q ss_pred CchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHH
Q 037435 33 NKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCE 112 (583)
Q Consensus 33 ~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~e 112 (583)
..++.+||.|||+.+|+|||+||||+||.+||++++ +.+||...+|+....+-+.+||+||||||+||||||++..
T Consensus 4 d~~q~~av~KAis~~Et~~K~KH~Rt~I~gTh~eks----a~~FWt~ik~~PL~~~~VltwKfchllHKvLreGHpsal~ 79 (980)
T KOG0980|consen 4 DRAQLEAVQKAISKDETPPKRKHVRTIIVGTHDEKS----SKIFWTTIKRQPLENHEVLTWKFCHLLHKVLREGHPSALE 79 (980)
T ss_pred hHHHHHHHHHHhccccCCCchhhhhheeeeeccccc----chhHHHHhhccccccchHHHHHHHHHHHHHHHcCCcchhH
Confidence 357889999999999999999999999999999986 5689999999999999999999999999999999999988
Q ss_pred HHHHHhhcCCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhcc-----ccc--------ccCCccCCCCHH
Q 037435 113 ELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECFRILRY-----DVE--------KSHMGSGRLSIP 179 (583)
Q Consensus 113 ell~y~r~r~~iL~Ls~F~D~Ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~-----d~~--------~~~~r~r~l~~e 179 (583)
+.. |.++++..++.+|++-+ .+||.+||.|++||..|+.||.++.. ++. +|.+.+.++++|
T Consensus 80 es~---r~r~~i~~l~r~w~~ls---~~Yg~lI~~Y~klL~~Kl~FH~k~p~FpGtle~s~~~l~~av~D~n~~feltvd 153 (980)
T KOG0980|consen 80 ESQ---RYKKWITQLGRMWGHLS---DGYGPLIRAYVKLLHDKLSFHAKHPVFPGTLEYSDYQLLTAVDDLNNGFELTVD 153 (980)
T ss_pred HHH---HHHHHHHHHHHHhcccc---ccchHHHHHHHHHHHHHHhHhhcCCCCCCCccccHHHHHHHhccHHHHHHHHHH
Confidence 876 44678999999998753 68999999999999999999998742 221 124456666665
Q ss_pred --HHHhhHHHHHHHHHHHhcCCCCC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHH
Q 037435 180 --DLLDQLPSLQQLLFRLLGCKPQG-AALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRK 256 (583)
Q Consensus 180 --~LL~~L~~LQ~LLdrlL~crP~g-~a~~N~lil~Al~llvkDSf~LY~~indgii~LLe~fFeM~k~da~kaLeiYkR 256 (583)
++++.+..||+.|++.+...+.. ...++.|.+++|++||.||+.||++++..|.+|.. .+ .+|++.+ +..|
T Consensus 154 mmd~~D~ll~lq~~vF~s~~s~r~~s~t~qgqCrlapLI~lIqds~~lY~y~vkmlfkLHs---~v-p~dtLeg--hRdR 227 (980)
T KOG0980|consen 154 MMDYMDSLLELQQTVFSSMNSSRWVSLTPQGQCRLAPLIPLIQDSSGLYDYLVKMLFKLHS---QV-PPDTLEG--HRDR 227 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCCCcceehhHHHHHHHhhhhHHHHHHHHHHHHHc---CC-CHHHhhh--HHHH
Confidence 78888899999999999865443 34689999999999999999999999886655542 22 3677765 4699
Q ss_pred HHHhHHHHHHHHHHhhhcccccc-cccccCCCCChhhHH--HHHHHHH
Q 037435 257 SESQADSLTSLFEICRELDFGRG-QKYIKIEKPPASFMT--AMEDYVK 301 (583)
Q Consensus 257 f~kQ~e~L~~Fy~~ck~l~~~r~-~~iP~L~~~P~~~L~--~LEEylr 301 (583)
|..|+.+|++||..|+++.|++. ++||.||.-||+|+. .+++|+.
T Consensus 228 f~~qf~rLk~FY~~~S~lqYfk~LI~IP~LP~~~Pnf~~~sdl~~~~~ 275 (980)
T KOG0980|consen 228 FHTQFERLKQFYADCSNLQYFKRLIQIPTLPEDAPNFLRQSDLESYIT 275 (980)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHhcCCCCCCCCcccccccchhhcCC
Confidence 99999999999999999999876 899999999999998 7999887
No 4
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.97 E-value=2.5e-31 Score=240.14 Aligned_cols=117 Identities=44% Similarity=0.696 Sum_probs=107.3
Q ss_pred HHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHHHH
Q 037435 36 LDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELI 115 (583)
Q Consensus 36 LdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~eell 115 (583)
++++|.|||+|+++|||+|||++||.+|+.++ .++.+|++.|.+|+.. +||+|+||+|||+|+|||+|++.|.++++
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~--~~~~~~~~~l~~Rl~~-~~w~v~~K~LillH~llr~G~~~~~~~~~ 77 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSP--ASIPSFASALSRRLLD-RNWVVVLKALILLHRLLREGHPSFLQELL 77 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 57899999999999999999999999998753 6889999999999976 99999999999999999999999988765
Q ss_pred HHhhcCCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 037435 116 NYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECF 159 (583)
Q Consensus 116 ~y~r~r~~iL~Ls~F~D~Ss~~s~d~safVR~Ya~YLdeRL~~~ 159 (583)
. +..+|++++|.|.+++.+|||+.|||.|++||++|++||
T Consensus 78 ~----~~~~l~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl~~~ 117 (117)
T cd03564 78 S----RRGWLNLSNFLDKSSSLGYGYSAFIRAYARYLDERLSFH 117 (117)
T ss_pred H----ccCeeeccccccCCCCCchhhhHHHHHHHHHHHHHHhcC
Confidence 3 356899999999887789999999999999999999986
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=99.95 E-value=8.4e-28 Score=219.75 Aligned_cols=126 Identities=37% Similarity=0.515 Sum_probs=112.3
Q ss_pred chHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHH
Q 037435 34 KGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEE 113 (583)
Q Consensus 34 ~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~ee 113 (583)
++++++|.|||||+++|||+|||++|+.+|+.++ .++.+|+..|++||.++++|+|++|+|+|||+||++|++.|..+
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~--~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~ 78 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEK--SSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILE 78 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCH--hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4789999999999999999999999999998764 57899999999999887799999999999999999999988765
Q ss_pred HHHHhhcCCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhccc
Q 037435 114 LINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECFRILRYD 165 (583)
Q Consensus 114 ll~y~r~r~~iL~Ls~F~D~Ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~d 165 (583)
+. +++..+++|++|++. ++.+||++.|||.|++||++|+.+++.++.+
T Consensus 79 ~~---~~~~~i~~L~~f~~~-~~~~~d~g~~VR~ya~~L~~~l~~~~~l~~e 126 (127)
T smart00273 79 AL---RNRNRILNLSDFQDI-DSRGKDQGANIRTYAKYLLERLEDDRRLKEE 126 (127)
T ss_pred HH---HhhHHHhhHhhCeec-CCCCeeCcHHHHHHHHHHHHHHcCHHHHhcc
Confidence 53 334468999999987 4578999999999999999999999887643
No 6
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=99.34 E-value=7.1e-12 Score=114.55 Aligned_cols=118 Identities=23% Similarity=0.323 Sum_probs=91.9
Q ss_pred CchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhh--ccCCChHHHHHHHHHHHHHHhhCChhh
Q 037435 33 NKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRL--AKTHSWTVALKTLIVIHRALREVDHSF 110 (583)
Q Consensus 33 ~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL--~kTrnWiValKtLIllHrLLreG~p~f 110 (583)
++++++-|.+||+.++.+|..+++.+|..+|+.+ .+...++..|++|| .+.++|++++|+|.+||.||+.|++.|
T Consensus 1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~---~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~ 77 (125)
T PF01417_consen 1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNS---KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERF 77 (125)
T ss_dssp --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSC---HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHH
T ss_pred CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHH
Confidence 4688999999999999999999999999999886 35677889999999 457999999999999999999999999
Q ss_pred HHHHHHHhhcCCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHH
Q 037435 111 CEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVE 157 (583)
Q Consensus 111 ~eell~y~r~r~~iL~Ls~F~D~Ss~~s~d~safVR~Ya~YLdeRL~ 157 (583)
..++.... ..+-.+.+|+. ..+.+.+++.-||..|+-|-+-|.
T Consensus 78 ~~~~~~~~---~~I~~l~~f~~-~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 78 VDELRDHI---DIIRELQDFQY-VDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HHHHHHTH---HHHHGGGG----BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH---HHHhhcceeec-cCCCCccHHHHHHHHHHHHHHHhC
Confidence 88764322 23666788865 223578889999999998877654
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.18 E-value=1.4e-10 Score=104.23 Aligned_cols=112 Identities=21% Similarity=0.285 Sum_probs=90.5
Q ss_pred HHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHHHHH
Q 037435 37 DIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELIN 116 (583)
Q Consensus 37 dvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~eell~ 116 (583)
++.|.|||+++...|+.+++.+|...+... + .....++..|.+||. .++|.|++|+|.|+|.|+..|++.|..++
T Consensus 2 ~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~-~-~~~~~~~~~l~kRl~-~~~~~~~lkaL~lLe~lvkN~g~~f~~~i-- 76 (115)
T cd00197 2 EKTVEKATSNENMGPDWPLIMEICDLINET-N-VGPKEAVDAIKKRIN-NKNPHVVLKALTLLEYCVKNCGERFHQEV-- 76 (115)
T ss_pred hHHHHHHcCCCCCCCCHHHHHHHHHHHHCC-C-ccHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHccHHHHHHH--
Confidence 578999999999999999999999999765 2 567889999999996 46999999999999999999999998765
Q ss_pred HhhcCCCccccccccCCCCCCCcchhHHHHHHHHHHHHHH
Q 037435 117 YSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERV 156 (583)
Q Consensus 117 y~r~r~~iL~Ls~F~D~Ss~~s~d~safVR~Ya~YLdeRL 156 (583)
+++..+..+..| +.....+.+.+.+||.++++|.+..
T Consensus 77 --~~~~~~~~l~~~-~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 77 --ASNDFAVELLKF-DKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred --HHhHHHHHHHHh-hccccccCCCChHHHHHHHHHHHHH
Confidence 333344455444 2222345677899999999997653
No 8
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=99.05 E-value=1.6e-09 Score=99.49 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=89.8
Q ss_pred hHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHhhCChhhHHH
Q 037435 35 GLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAK-THSWTVALKTLIVIHRALREVDHSFCEE 113 (583)
Q Consensus 35 dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~k-TrnWiValKtLIllHrLLreG~p~f~ee 113 (583)
+.++-|..|||.+.++|..+++.+|..+|+.. .+...++..|++||.. .++|++++|+|+|++.||+.|++.|..+
T Consensus 1 ~~e~~vreATs~d~wGp~~~~m~eIa~~t~~~---~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~ 77 (123)
T cd03571 1 EAELKVREATSNDPWGPSGTLMAEIARATYNY---VEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDD 77 (123)
T ss_pred CHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 35778999999999999999999999999875 4567899999999974 4799999999999999999999998777
Q ss_pred HHHHhhcCCCccccccccCCCCCCCcchhHHHHHHHHHHHHHH
Q 037435 114 LINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERV 156 (583)
Q Consensus 114 ll~y~r~r~~iL~Ls~F~D~Ss~~s~d~safVR~Ya~YLdeRL 156 (583)
+...+. .+-.|.+|.=. ...+.|.+.-||.=|+-|-+-|
T Consensus 78 ~r~~~~---~i~~L~~F~~~-d~~g~d~G~~VR~ka~~i~~Ll 116 (123)
T cd03571 78 ARENLY---IIRTLKDFQYI-DENGKDQGINVREKAKEILELL 116 (123)
T ss_pred HHHhHH---HHHhhccceee-CCCCCchhHHHHHHHHHHHHHh
Confidence 642221 13345555421 1134588999998887776544
No 9
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=98.63 E-value=9.1e-08 Score=100.61 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=92.0
Q ss_pred CCchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHhhCChhh
Q 037435 32 ENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAK-THSWTVALKTLIVIHRALREVDHSF 110 (583)
Q Consensus 32 ~~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~k-TrnWiValKtLIllHrLLreG~p~f 110 (583)
.+++.++.|.-||+.+...|..+++-+|..+|+.. ..+..+|..|++|+.+ -++|++++|+|.||-.||..|+..|
T Consensus 18 ~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~---~e~~eIm~vi~kRl~d~gknWR~VyKaLtlleyLl~~GSErv 94 (336)
T KOG2056|consen 18 NYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNF---VEYQEIMDVLWKRLNDSGKNWRHVYKALTLLEYLLKNGSERV 94 (336)
T ss_pred cchHHHHHHHhccccccCCCchHHHHHHHHHhcCH---HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCcHHH
Confidence 38999999999999999999999999999999986 5678999999999975 5899999999999999999999887
Q ss_pred HHHHHHHhhcCCC-ccccccccCCCCCCCcchhHHHHHHHHHHHHHHH
Q 037435 111 CEELINYSRGRAL-MFNLSHFRDESSPVAWDHSAWIRNYALYLEERVE 157 (583)
Q Consensus 111 ~eell~y~r~r~~-iL~Ls~F~D~Ss~~s~d~safVR~Ya~YLdeRL~ 157 (583)
.+++ +.+.. |--|..|.-.. ..+.|.+..||.-++-|...|+
T Consensus 95 ~~~~----ren~~~I~tL~~Fq~iD-~~G~dqG~nVRkkak~l~~LL~ 137 (336)
T KOG2056|consen 95 VDET----RENIYTIETLKDFQYID-EDGKDQGLNVRKKAKELLSLLE 137 (336)
T ss_pred HHHH----HhhhHHHHHHhhceeeC-CCCccchHHHHHHHHHHHHHhc
Confidence 6654 32211 22334443111 2356778889887776654443
No 10
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=97.95 E-value=6.7e-05 Score=69.06 Aligned_cols=112 Identities=21% Similarity=0.196 Sum_probs=86.7
Q ss_pred HHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHHHHHHh
Q 037435 39 AIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELINYS 118 (583)
Q Consensus 39 AIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~eell~y~ 118 (583)
.|.+||+.++.||--=-.++|...|+.+. ..+..++..|.+||.+ ++..|-+|+|-+|-.|++.|++.|+.++...+
T Consensus 5 ll~~ATsdd~~p~pgy~~~Eia~~t~~s~--~~~~ei~d~L~kRL~~-~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~ 81 (122)
T cd03572 5 LLSKATSDDDEPTPGYLYEEIAKLTRKSV--GSCQELLEYLLKRLKR-SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS 81 (122)
T ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHcCH--HHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH
Confidence 47899999987776666679999998852 4577889999999975 77888899999999999999999976654332
Q ss_pred hcCCCccccccccCCCCC-CCcchhHHHHHHHHHHHHHH
Q 037435 119 RGRALMFNLSHFRDESSP-VAWDHSAWIRNYALYLEERV 156 (583)
Q Consensus 119 r~r~~iL~Ls~F~D~Ss~-~s~d~safVR~Ya~YLdeRL 156 (583)
. .+-.+.+|+..-.+ .+++.+..||.=|+=|-.-+
T Consensus 82 ~---~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 82 A---QIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred H---HHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 2 25567788764444 57888999998877665543
No 11
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.00045 Score=72.29 Aligned_cols=125 Identities=20% Similarity=0.264 Sum_probs=94.0
Q ss_pred CCchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcc--CCChHHHHHHHHHHHHHHhhCChh
Q 037435 32 ENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAK--THSWTVALKTLIVIHRALREVDHS 109 (583)
Q Consensus 32 ~~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~k--TrnWiValKtLIllHrLLreG~p~ 109 (583)
+|++++.-|..|||.|.+.|.--.+.+|-.+|...- --++..++..|+.|+-+ ..+|+-++|+|||+..||+.|+..
T Consensus 20 NY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry-~EdFpelmnmL~qRMLedNK~~WRRVYKSLiLLaYLikNGSER 98 (499)
T KOG2057|consen 20 NYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRY-MEDFPELMNMLFQRMLEDNKDAWRRVYKSLILLAYLIKNGSER 98 (499)
T ss_pred cchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHH
Confidence 589999999999999999999999999999996410 12466788899999853 468999999999999999999999
Q ss_pred hHHHHHHHhhcCCCccccccccCCCCCCCcchhHHHHHHHHHH------HHHHHHHhh
Q 037435 110 FCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYL------EERVECFRI 161 (583)
Q Consensus 110 f~eell~y~r~r~~iL~Ls~F~D~Ss~~s~d~safVR~Ya~YL------deRL~~~r~ 161 (583)
|.++-...+- .-+.|.--+|.|+. +.|.+-.||.-.+-| ++||+.-|+
T Consensus 99 ~VqeAREh~Y-dLR~LEnYhfiDEh---GKDQGINIR~kVKeilEfanDDd~Lq~ERk 152 (499)
T KOG2057|consen 99 FVQEAREHAY-DLRRLENYHFIDEH---GKDQGINIRHKVKEILEFANDDDLLQAERK 152 (499)
T ss_pred HHHHHHHHHH-HHHhhhhccchhhh---CccccccHHHHHHHHHHHhccHHHHHHHHH
Confidence 8876432221 11123334577764 457788899887766 456665554
No 12
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.38 E-value=0.1 Score=49.40 Aligned_cols=76 Identities=20% Similarity=0.294 Sum_probs=65.6
Q ss_pred HHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHHH
Q 037435 36 LDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEEL 114 (583)
Q Consensus 36 LdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~eel 114 (583)
+|..|.|||+....-++--.+-.|-...... + .....++++|.+||. .+|..|++.+|.|+--|+..+...|..|+
T Consensus 1 ~e~~iekATse~l~~~dw~~il~icD~I~~~-~-~~~k~a~ral~KRl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 76 (144)
T cd03568 1 FDDLVEKATDEKLTSENWGLILDVCDKVKSD-E-NGAKDCLKAIMKRLN-HKDPNVQLRALTLLDACAENCGKRFHQEV 76 (144)
T ss_pred ChHHHHHHcCccCCCcCHHHHHHHHHHHhcC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 3678999999998888888888888888765 3 567899999999995 68999999999999999999998887665
No 13
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=95.37 E-value=0.12 Score=48.66 Aligned_cols=78 Identities=23% Similarity=0.324 Sum_probs=66.9
Q ss_pred chHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHH
Q 037435 34 KGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEE 113 (583)
Q Consensus 34 ~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~ee 113 (583)
+.++..|.|||+....-|+--.+-+|........ .....++++|.+|| +.+|-.|++-+|.|+.-|+..+...|..+
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~--~~~k~a~ral~krl-~~~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSKD--VQPKYAMRALKKRL-LSKNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCCC--CCHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 5689999999998888888899888888887643 45689999999999 56999999999999999999988777665
Q ss_pred H
Q 037435 114 L 114 (583)
Q Consensus 114 l 114 (583)
+
T Consensus 80 v 80 (142)
T cd03569 80 V 80 (142)
T ss_pred H
Confidence 4
No 14
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=95.23 E-value=0.12 Score=48.27 Aligned_cols=79 Identities=23% Similarity=0.265 Sum_probs=65.0
Q ss_pred CchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHH
Q 037435 33 NKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCE 112 (583)
Q Consensus 33 ~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~e 112 (583)
...++..|.|||++...-++--.+-.|....... + .....++++|.+||. .++..|.+-+|.|+.-|+..+.+.|..
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~-~-~~~kea~~~l~krl~-~~~~~vq~~aL~lld~lvkNcg~~f~~ 79 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSS-P-DGAKEAARALRKRLK-HGNPNVQLLALTLLDALVKNCGPRFHR 79 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTS-T-THHHHHHHHHHHHHT-TSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcC-C-ccHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3578899999999998888888888888888776 2 456889999999995 599999999999999999999888876
Q ss_pred HH
Q 037435 113 EL 114 (583)
Q Consensus 113 el 114 (583)
++
T Consensus 80 ev 81 (140)
T PF00790_consen 80 EV 81 (140)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 15
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=94.88 E-value=0.18 Score=46.87 Aligned_cols=75 Identities=23% Similarity=0.256 Sum_probs=64.8
Q ss_pred HHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHHH
Q 037435 37 DIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEEL 114 (583)
Q Consensus 37 dvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~eel 114 (583)
+..|.|||+....-++--.+-+|....... + .....++++|.+||. .+|-.|++.+|.++--++..+...|..++
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~-~-~~~k~a~r~l~krl~-~~n~~v~l~AL~lLe~~vkNcg~~f~~ev 76 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINST-P-DGPKDAVRLLKKRLN-NKNPHVALLALTLLDACVKNCGSKFHLEV 76 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 567999999998889989988888888665 3 456889999999995 79999999999999999999888887665
No 16
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=94.86 E-value=0.21 Score=47.11 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=66.4
Q ss_pred HHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHHH
Q 037435 36 LDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEEL 114 (583)
Q Consensus 36 LdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~eel 114 (583)
++..|.|||+....-|+--.+-.|....... + .....++++|.+||. .+|-.|++-+|.++.-|+..+...|..++
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~-~-~~~k~a~rai~krl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 77 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKE-P-EGPQLAVRLLAHKIQ-SPQEKEALQALTVLEACMKNCGERFHSEV 77 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 6788999999999889999999998888654 4 356789999999995 78999999999999999999888887665
No 17
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=94.81 E-value=0.22 Score=46.93 Aligned_cols=77 Identities=18% Similarity=0.181 Sum_probs=65.7
Q ss_pred HHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHHH
Q 037435 36 LDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEEL 114 (583)
Q Consensus 36 LdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~eel 114 (583)
++..|.|||+....-++--.+-+|-...... . .....++++|.+||...+|-.|++-+|.|+--|+..+...|..|+
T Consensus 2 ~~~~IekATse~l~~~dw~~ileicD~In~~-~-~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei 78 (141)
T cd03565 2 VGQLIEKATDGSLQSEDWGLNMEICDIINET-E-DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV 78 (141)
T ss_pred HhHHHHHHcCcCCCCcCHHHHHHHHHHHhCC-C-CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 4667999999998888888888888888653 2 467899999999996567999999999999999999998887765
No 18
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=94.34 E-value=0.29 Score=45.36 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=63.6
Q ss_pred HHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHHH
Q 037435 37 DIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEEL 114 (583)
Q Consensus 37 dvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~eel 114 (583)
+..|.|||+....-++-.-+-+|........ .....++++|.+||. .+|-.|.+.+|.++--|+..+...|..++
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~--~~~k~a~raL~krl~-~~n~~vql~AL~lLd~~vkNcg~~f~~~i 76 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKP--NGPKEAARAIRKKIK-YGNPHVQLLALTLLELLVKNCGKPFHLQV 76 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 5679999998877788888888888887652 456889999999994 68999999999999999999988886654
No 19
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.22 E-value=23 Score=43.73 Aligned_cols=171 Identities=16% Similarity=0.206 Sum_probs=98.1
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHhhCC--hhhHHHHHHHhhcCCCccccccccCCCCCCCcchhHHHHHHHHHH
Q 037435 75 CIQSLAKRLAKTHSWTVALKTLIVIHRALREVD--HSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYL 152 (583)
Q Consensus 75 ~v~aL~rRL~kTrnWiValKtLIllHrLLreG~--p~f~eell~y~r~r~~iL~Ls~F~D~Ss~~s~d~safVR~Ya~YL 152 (583)
++..|..|+ .+-+.-|-.|.|-++||+.+.-. ..++.+++.-. ++..-| -|..||.||--|
T Consensus 360 ~le~l~erl-~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la--------~grl~D--------kSslVRk~Ai~L 422 (1251)
T KOG0414|consen 360 LLELLRERL-LDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELA--------IGRLED--------KSSLVRKNAIQL 422 (1251)
T ss_pred HHHHHHHHh-hcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHH--------hccccc--------ccHHHHHHHHHH
Confidence 667788888 46788999999999999988754 33444443221 222223 367899998877
Q ss_pred HHHHHHHhh----hcccc-----cc-------c-----------CCccCCCCHHHHHhhHHHHH----HHHHHHhcCCCC
Q 037435 153 EERVECFRI----LRYDV-----EK-------S-----------HMGSGRLSIPDLLDQLPSLQ----QLLFRLLGCKPQ 201 (583)
Q Consensus 153 deRL~~~r~----~~~d~-----~~-------~-----------~~r~r~l~~e~LL~~L~~LQ----~LLdrlL~crP~ 201 (583)
--.+.-..- ++.+- +. + ....+......+++..+.-. ........|.+.
T Consensus 423 l~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e 502 (1251)
T KOG0414|consen 423 LSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQEE 502 (1251)
T ss_pred HHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhhhcccceeechhhhhhhccccccccccchh
Confidence 665543221 11110 00 0 01112222223343333333 111222222211
Q ss_pred C--------c-ccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 037435 202 G--------A-ALYNNLI-HYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFEIC 271 (583)
Q Consensus 202 g--------~-a~~N~li-l~Al~llvkDSf~LY~~indgii~LLe~fFeM~k~da~kaLeiYkRf~kQ~e~L~~Fy~~c 271 (583)
. + ...|.++ +.+++.-++|.+.+-+.+..++-.++...|.=++.|-.++.+ ||-.|
T Consensus 503 ~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Id--------------fl~~c 568 (1251)
T KOG0414|consen 503 HCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAID--------------FLVRC 568 (1251)
T ss_pred hhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH--------------HHHHH
Confidence 1 0 1133343 447777789999999999999999988888888887777654 66666
Q ss_pred hhccc
Q 037435 272 RELDF 276 (583)
Q Consensus 272 k~l~~ 276 (583)
+..|+
T Consensus 569 ~~F~I 573 (1251)
T KOG0414|consen 569 KQFGI 573 (1251)
T ss_pred HHhCC
Confidence 66665
No 20
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=79.06 E-value=9.8 Score=41.79 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=60.3
Q ss_pred CchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHH
Q 037435 33 NKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCE 112 (583)
Q Consensus 33 ~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~e 112 (583)
...++-.|.|||+...+-=+=.+|-.|-...... |. .-..|+.+|.|||. +++.-|++-+|-|+--|.......|+.
T Consensus 6 ~n~~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~-~~-~~kd~lk~i~KRln-~~dphV~L~AlTLlda~~~NCg~~~r~ 82 (462)
T KOG2199|consen 6 ANPFEQDVEKATDEKNTSENWSLILDVCDKVGSD-PD-GGKDCLKAIMKRLN-HKDPHVVLQALTLLDACVANCGKRFRL 82 (462)
T ss_pred cchHHHHHHHhcCcccccccHHHHHHHHHhhcCC-Cc-ccHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHhcchHHHH
Confidence 4568889999999887655555655554444443 32 23789999999994 799999999999999999887777776
Q ss_pred HH
Q 037435 113 EL 114 (583)
Q Consensus 113 el 114 (583)
|+
T Consensus 83 EV 84 (462)
T KOG2199|consen 83 EV 84 (462)
T ss_pred HH
Confidence 65
No 21
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.05 E-value=44 Score=37.85 Aligned_cols=75 Identities=20% Similarity=0.226 Sum_probs=53.5
Q ss_pred HHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHH
Q 037435 36 LDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEE 113 (583)
Q Consensus 36 LdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~ee 113 (583)
+...|-|||+....-|+=-..-+|-....... ......+++|.|||. .++-.|++=+|.|+--|+......|..+
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~--~~~~eAvralkKRi~-~k~s~vq~lALtlLE~cvkNCG~~fh~~ 76 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTE--GGPKEAVRALKKRLN-SKNSKVQLLALTLLETCVKNCGYSFHLQ 76 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCc--cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45789999999877777665555555543332 234688999999996 4555888999999998887655555433
No 22
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=54.28 E-value=48 Score=41.12 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHH--------------hHHHHHHHHHHhhhc
Q 037435 209 LIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSES--------------QADSLTSLFEICREL 274 (583)
Q Consensus 209 lil~Al~llvkDSf~LY~~indgii~LLe~fFeM~k~da~kaLeiYkRf~k--------------Q~e~L~~Fy~~ck~l 274 (583)
+-..+|....+|+.-||+.|-| ||..+|+.+-.++. -.+|-.|+. .=.++..|+..|.+-
T Consensus 447 ~f~~~lk~rr~e~~~vI~~IGD----lLl~~FsGe~ae~L--~~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~ 520 (1167)
T KOG3520|consen 447 SFLQRLKERRKESLVVIKRIGD----LLLDQFSGENAERL--KKTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESN 520 (1167)
T ss_pred HHHHHHHHHHHhccchHHHHHH----HHHHHcCchHHHHH--HHHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcc
Confidence 4567788888888887777766 55567777544443 344555543 345566677776555
Q ss_pred ccccccccc
Q 037435 275 DFGRGQKYI 283 (583)
Q Consensus 275 ~~~r~~~iP 283 (583)
-++|+.+++
T Consensus 521 p~cRRL~lk 529 (1167)
T KOG3520|consen 521 PVCRRLGLK 529 (1167)
T ss_pred hHHHhhcch
Confidence 555555544
No 23
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=53.06 E-value=10 Score=47.50 Aligned_cols=20 Identities=5% Similarity=0.170 Sum_probs=14.9
Q ss_pred HHHHHHHhHHHHHHHHHHhh
Q 037435 253 IYRKSESQADSLTSLFEICR 272 (583)
Q Consensus 253 iYkRf~kQ~e~L~~Fy~~ck 272 (583)
+=.||..++++|+.|+-.-|
T Consensus 1660 lger~sds~~kvrqlLPlpK 1679 (2220)
T KOG3598|consen 1660 LGERFSDSTRKVRQLLPLPK 1679 (2220)
T ss_pred HHhhhhHHHHHHHHhcCCCc
Confidence 34678888889998886644
No 24
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=40.75 E-value=26 Score=27.89 Aligned_cols=34 Identities=24% Similarity=0.499 Sum_probs=26.1
Q ss_pred HHHhhhcCChhhHHHHHHHHHHHHHhHHHHHHHHHHhhhcccc
Q 037435 235 LVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFEICRELDFG 277 (583)
Q Consensus 235 LLe~fFeM~k~da~kaLeiYkRf~kQ~e~L~~Fy~~ck~l~~~ 277 (583)
-|..||.|+..||.+.|++-....| ..|+.+|+.
T Consensus 9 ~L~~~fhlp~~eAA~~Lgv~~T~LK---------r~CR~~GI~ 42 (52)
T PF02042_consen 9 DLSQYFHLPIKEAAKELGVSVTTLK---------RRCRRLGIP 42 (52)
T ss_pred HHHHHhCCCHHHHHHHhCCCHHHHH---------HHHHHcCCC
Confidence 4678999999999999886555444 458888864
No 25
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.12 E-value=1.3e+02 Score=33.93 Aligned_cols=82 Identities=21% Similarity=0.349 Sum_probs=58.0
Q ss_pred CchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHH
Q 037435 33 NKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCE 112 (583)
Q Consensus 33 ~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~e 112 (583)
...||.=|.|||+....--+=|+|.-++.-.... + .+..-.+|.|+..++.-..| -|+-+|.++..|++.|...|.+
T Consensus 6 ~~sle~wlnrATdp~~~eedw~ai~~fceqinkd-p-~gp~lAv~LlaHKiqSPqe~-EAl~altvLe~cmkncGekfH~ 82 (594)
T KOG1086|consen 6 VESLEYWLNRATDPSNDEEDWKAIDGFCEQINKD-P-EGPLLAVRLLAHKIQSPQEW-EALQALTVLEYCMKNCGEKFHE 82 (594)
T ss_pred cccHHHHHHhccCccchHHHHHHHHHHHHHHhcC-C-CCchhHHHHHHhhcCChhHH-HHHHHHHHHHHHHHhhhHHHHH
Confidence 3568889999999886333334555444444333 2 22345678899999765566 5788999999999999999988
Q ss_pred HHHHH
Q 037435 113 ELINY 117 (583)
Q Consensus 113 ell~y 117 (583)
|+-+|
T Consensus 83 evgkf 87 (594)
T KOG1086|consen 83 EVGKF 87 (594)
T ss_pred HHHHH
Confidence 87544
No 26
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.51 E-value=76 Score=36.20 Aligned_cols=66 Identities=17% Similarity=0.323 Sum_probs=41.4
Q ss_pred HHHHHhhHHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHH
Q 037435 178 IPDLLDQLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKS 257 (583)
Q Consensus 178 ~e~LL~~L~~LQ~LLdrlL~crP~g~a~~N~lil~Al~llvkDSf~LY~~indgii~LLe~fFeM~k~da~kaLeiYkRf 257 (583)
.++.|..+....++..|-+.|.|...+=...|. |++-+.+-.+|-.||.||
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~-----------------------------fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIK-----------------------------FELRYKEIERARSIYERF 200 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHH-----------------------------HHHHhhHHHHHHHHHHHH
Confidence 367778888888888888888876543221111 455555555666666666
Q ss_pred HHhHHHHHHHHHHhh
Q 037435 258 ESQADSLTSLFEICR 272 (583)
Q Consensus 258 ~kQ~e~L~~Fy~~ck 272 (583)
+-.+-+++.|..++|
T Consensus 201 V~~HP~v~~wikyar 215 (677)
T KOG1915|consen 201 VLVHPKVSNWIKYAR 215 (677)
T ss_pred heecccHHHHHHHHH
Confidence 666666666665554
No 27
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=25.86 E-value=9.7e+02 Score=26.86 Aligned_cols=64 Identities=22% Similarity=0.292 Sum_probs=37.1
Q ss_pred HHHHHHhhcCCCC----CCCch--hHHHHHHHHHhcCCCCCcHHHHHHHHH-HhhccCCChHHHHHHHHHHHHHHhhCC
Q 037435 36 LDIAIVKATNHDE----VLPKE--KHISKILEAVLASRPRADVAYCIQSLA-KRLAKTHSWTVALKTLIVIHRALREVD 107 (583)
Q Consensus 36 LdvAIvKAT~hde----~PPKe--KHVr~Il~~T~~~rp~a~v~~~v~aL~-rRL~kTrnWiValKtLIllHrLLreG~ 107 (583)
.+.||+||...+- .-|+. -|+|-|-..+... + |...+. .+. +..+=-+|.|..-.||-|++.|+
T Consensus 6 ~dtai~k~lk~ey~fl~nwp~y~f~~~rg~y~~~y~s-----i--C~~is~~s~~-~~~~k~~C~kffs~leni~~rg~ 76 (420)
T PTZ00473 6 RDTAIVKALKKEYPFLANWPDYHFEDLRGIYNATYES-----I--CEEISSVSDY-NKVNKENCIKFFSILENIVRRGD 76 (420)
T ss_pred HHHHHHHHHHHhchHhhcCcccCHHHHhhhhHhHHHH-----H--HHHhhcccch-hhhhHHHHHHHHHHHHHHhcccc
Confidence 4668999987652 23443 3666665555321 1 222221 111 12344578899999999999885
No 28
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.74 E-value=56 Score=23.58 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhh
Q 037435 247 AVRTLEIYRKSESQADSLTSLFEICR 272 (583)
Q Consensus 247 a~kaLeiYkRf~kQ~e~L~~Fy~~ck 272 (583)
-.+|=.||.||...+-.+..+..+|+
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~WikyAk 28 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34667899999999999999888886
No 29
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=23.48 E-value=2.8e+02 Score=29.99 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHHHHHHhhcCCCccccccccCCCCCCCcchhHHHHHHHHH
Q 037435 72 VAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALY 151 (583)
Q Consensus 72 v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~eell~y~r~r~~iL~Ls~F~D~Ss~~s~d~safVR~Ya~Y 151 (583)
+..++.+|.+|+- ..++.+|.+||-++-++|-.-......+++...|..+..|. ...+....++-.||+-.+.
T Consensus 11 i~~fI~~lk~r~v-~gS~aiA~eTl~llr~iIs~~rw~~~n~Li~~vr~~g~~L~------~A~psE~~~gNiirrIlkl 83 (353)
T KOG1465|consen 11 ISEFIAALKKRLV-RGSYAIAIETLNLLRQIISRERWSTANDLIESVRDVGKKLH------AAQPSELSCGNIIRRILKL 83 (353)
T ss_pred HHHHHHHHHhhcc-CCcHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHhh------hcCCchhhhhHHHHHHHHH
Confidence 5678899999985 46999999999999999988887777788877775554443 2334445678889998888
Q ss_pred HHHHHH
Q 037435 152 LEERVE 157 (583)
Q Consensus 152 LdeRL~ 157 (583)
+.|-..
T Consensus 84 iReE~~ 89 (353)
T KOG1465|consen 84 IREEVL 89 (353)
T ss_pred HHHHHH
Confidence 866544
No 30
>PF07990 NABP: Nucleic acid binding protein NABP; InterPro: IPR012940 This domain occurs in some putative nucleic acid binding proteins. One of these proteins has been partially characterised [] and contains two putative phosphorylation sites and a possible dimerisation / leucine zipper domain.
Probab=23.02 E-value=2.2e+02 Score=31.55 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=14.4
Q ss_pred CCCCccccCCCCCCchhhHHHHHH
Q 037435 509 NQDPFSASSGVTPPANAQMSDMIQ 532 (583)
Q Consensus 509 ~~DPFaaS~~v~PP~~VQma~m~~ 532 (583)
..|||+..+-+ =.+|.=+-.+++
T Consensus 247 ~~dP~~~R~~~-G~s~~dl~~~qK 269 (385)
T PF07990_consen 247 QNDPSVDRNYM-GSSYMDLLGLQK 269 (385)
T ss_pred cCCcccccCCc-CccccchHHHHH
Confidence 45999998866 555544444444
No 31
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=22.97 E-value=3e+02 Score=24.02 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhHHHHHHHH---HHhhhcc
Q 037435 219 SESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLF---EICRELD 275 (583)
Q Consensus 219 kDSf~LY~~indgii~LLe~fFeM~k~da~kaLeiYkRf~kQ~e~L~~Fy---~~ck~l~ 275 (583)
.+.=++|..++. ++ .+..++++-++++..-+.+|++|| .|-+...
T Consensus 3 ~eme~~y~~~~~----~l--------~~le~~l~~~~~~~~~~~~L~~YY~s~~w~~d~e 50 (90)
T PF14131_consen 3 QEMEKIYNEWCE----LL--------EELEEALEKWQEAQPDYRKLRDYYGSEEWMEDYE 50 (90)
T ss_pred HHHHHHHHHHHH----HH--------HHHHHHHHHHHHHHHHHHHHHHHHCcHhHHHHHH
Confidence 344456666665 33 344577888899999999999999 4444443
No 32
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=22.62 E-value=2.8e+02 Score=31.63 Aligned_cols=95 Identities=17% Similarity=0.210 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhc-CChhhHHHHHHHHHHHH-Hh
Q 037435 184 QLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYV-SITDGILKLVDKYFE-MPRHDAVRTLEIYRKSE-SQ 260 (583)
Q Consensus 184 ~L~~LQ~LLdrlL~crP~g~a~~N~lil~Al~llvkDSf~LY~-~indgii~LLe~fFe-M~k~da~kaLeiYkRf~-kQ 260 (583)
+.+..+++|..+-+- +++...|.....-..++..+||.+|. ++.+.+..++|-.-+ =+...-+-||.+..+.+ .|
T Consensus 284 ~~~~v~~~l~~~~g~--e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q 361 (516)
T KOG2956|consen 284 QSALVADLLKEISGS--ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ 361 (516)
T ss_pred hhHHHHHHHHhccCc--cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhc
Confidence 444455555443322 34456788888888899999999998 444445555554433 12233344566666654 48
Q ss_pred HHHHHHHHHH--hhhccccccc
Q 037435 261 ADSLTSLFEI--CRELDFGRGQ 280 (583)
Q Consensus 261 ~e~L~~Fy~~--ck~l~~~r~~ 280 (583)
..+|.++-+. ||-++.....
T Consensus 362 ~~~l~DstE~ai~K~Leaa~ds 383 (516)
T KOG2956|consen 362 PARLFDSTEIAICKVLEAAKDS 383 (516)
T ss_pred hHhhhchHHHHHHHHHHHHhCC
Confidence 8888876554 6767655443
No 33
>PF11040 DGF-1_C: Dispersed gene family protein 1 of Trypanosoma cruzi C-terminus ; InterPro: IPR021053 Dispersed gene family protein 1 of Trypanosoma cruzi is likely to be highly expressed, and is expressed from the sub-telomeric region []. However, its function is not known. This entry represents the C-terminal domain on this protein.
Probab=20.51 E-value=54 Score=28.17 Aligned_cols=39 Identities=28% Similarity=0.311 Sum_probs=26.2
Q ss_pred ccCCccchhccccchHHHHHH--hhhcCCCCCCCCC-----CCCCC
Q 037435 465 LAGGLDKLTLDSLYDDAIARN--AKRNSSNTVGQQV-----GSNPF 503 (583)
Q Consensus 465 l~GG~d~l~Ld~~Y~~~~~~~--~~~~~~~~~g~~~-----~p~P~ 503 (583)
--||++.||=|.==.|+..+. .+...+|++|... .|+|+
T Consensus 15 rrGgLeALLrDdeesdEetqkphd~tsssyAsgtt~assYrPPA~~ 60 (87)
T PF11040_consen 15 RRGGLEALLRDDEESDEETQKPHDMTSSSYASGTTVASSYRPPAPP 60 (87)
T ss_pred ccccHHHHhccccccchhhcchhhhccccccCCceeeeccCCCCCc
Confidence 459999999997666665554 2456778777442 45654
No 34
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=20.35 E-value=1.3e+02 Score=37.50 Aligned_cols=27 Identities=37% Similarity=0.479 Sum_probs=15.7
Q ss_pred CCCCccccCCCCCCchh-----hHHHHHHHHH
Q 037435 509 NQDPFSASSGVTPPANA-----QMSDMIQQQN 535 (583)
Q Consensus 509 ~~DPFaaS~~v~PP~~V-----Qma~m~~~q~ 535 (583)
.+-||--|...-||+-+ ||.+-+|+|+
T Consensus 1408 ~q~p~~~~~q~~p~~qq~~~~hq~q~t~q~q~ 1439 (1517)
T KOG1883|consen 1408 LQAPLLPSHQQMPPPQQHSSSHQMQDTSQHQT 1439 (1517)
T ss_pred ccCccCchhhhCCCccCCchhhhhhhhhHHHH
Confidence 45777777766666543 5555444433
Done!