Query 037435
Match_columns 583
No_of_seqs 216 out of 559
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 21:02:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hx8_A Synapse-enriched clathr 100.0 3.9E-72 1.3E-76 578.9 31.9 278 7-302 4-298 (299)
2 3zym_A Phosphatidylinositol-bi 100.0 9.2E-67 3.1E-71 541.1 26.3 261 34-302 27-291 (310)
3 3zyl_A Phosphatidylinositol-bi 100.0 1.8E-64 6.1E-69 515.0 26.4 239 34-279 27-269 (271)
4 1eyh_A Epsin; superhelix of he 99.5 1.6E-13 5.6E-18 127.6 11.9 119 32-157 2-121 (144)
5 1inz_A EPS15-interacting porte 99.5 2.9E-13 9.9E-18 126.4 11.9 119 32-157 20-139 (148)
6 1xgw_A Epsin 4; ENTH, enthopro 99.2 1.3E-10 4.5E-15 111.3 13.7 119 31-156 30-150 (176)
7 3onk_A Epsin-3, ENT3; helix, p 99.2 1.4E-10 4.8E-15 108.4 11.7 119 29-155 5-126 (150)
8 1vdy_A Hypothetical protein (R 98.4 3.4E-06 1.2E-10 78.0 12.5 115 37-156 13-128 (140)
9 1elk_A Target of MYB1; superhe 95.6 0.063 2.2E-06 50.0 10.1 79 34-114 15-93 (157)
10 3ldz_A STAM-1, signal transduc 95.3 0.084 2.9E-06 48.2 9.7 78 34-114 4-81 (140)
11 1x5b_A Signal transducing adap 95.3 0.076 2.6E-06 49.8 9.5 78 34-114 14-91 (163)
12 3rru_A TOM1L1 protein; structu 95.2 0.095 3.2E-06 48.8 10.0 80 33-114 14-93 (152)
13 3g2s_A C-terminal fragment of 95.2 0.11 3.7E-06 48.2 10.2 79 33-114 9-87 (149)
14 1juq_A ADP-ribosylation factor 95.1 0.078 2.7E-06 50.1 9.2 79 33-114 11-89 (171)
15 1mhq_A ADP-ribosylation factor 95.0 0.087 3E-06 48.7 9.1 76 36-114 2-77 (148)
16 3zyq_A Hepatocyte growth facto 94.5 0.16 5.5E-06 49.9 10.1 79 33-114 6-84 (226)
17 1dvp_A HRS, hepatocyte growth 94.2 0.17 6E-06 49.2 9.4 77 35-114 5-81 (220)
18 3iot_A Maltose-binding protein 55.7 2.2 7.4E-05 44.7 -0.4 13 177-189 128-140 (449)
19 3iot_A Maltose-binding protein 53.8 3.5 0.00012 43.2 0.8 12 245-256 186-197 (449)
20 3bej_E Nuclear receptor coacti 51.4 5.8 0.0002 25.9 1.2 13 97-109 13-25 (26)
21 2prg_C Nuclear receptor coacti 25.7 24 0.00083 29.6 1.3 12 98-109 67-78 (88)
No 1
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=100.00 E-value=3.9e-72 Score=578.90 Aligned_cols=278 Identities=26% Similarity=0.456 Sum_probs=244.6
Q ss_pred chhHHHHHHHhhc-ccchhhhhhccCCCchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcc
Q 037435 7 GTQPIRKAIAALK-DTTKVGLVNLNSENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAK 85 (583)
Q Consensus 7 ~~~~~rka~GalK-D~tsiglAkv~~~~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~k 85 (583)
+.++||+++||+| |+|++ ++++||+|||+|+++|||+||||+||.+|+.++ +++++|+|+|.+|+ +
T Consensus 4 ~~~~~~~~~~a~k~~~~~~----------~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~--~~~~~~~~~L~~R~-~ 70 (299)
T 1hx8_A 4 AGQTINDRLLAARHSLAGQ----------GLAKSVCKATTEECIGPKKKHLDYLVHCANEPN--VSIPHLANLLIERS-Q 70 (299)
T ss_dssp ------------------C----------HHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHHH-T
T ss_pred chHHHHHHHHHHhhccchh----------HHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCC--CCHHHHHHHHHhhc-c
Confidence 4678999999999 99886 566799999999999999999999999999875 78899999999995 8
Q ss_pred CCChHHHHHHHHHHHHHHhhCChhhHHHHHHHhhcCCCccccccccCCCC-----------CCCcchhHHHHHHHHHHHH
Q 037435 86 THSWTVALKTLIVIHRALREVDHSFCEELINYSRGRALMFNLSHFRDESS-----------PVAWDHSAWIRNYALYLEE 154 (583)
Q Consensus 86 TrnWiValKtLIllHrLLreG~p~f~eell~y~r~r~~iL~Ls~F~D~Ss-----------~~s~d~safVR~Ya~YLde 154 (583)
++||+|+||+|||||||||||+|.|.+++ .+++++|+|++|+|.++ +.+||||.|||+|++||++
T Consensus 71 ~~~w~va~K~LivlH~llreG~~~~~~~l----~~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~ 146 (299)
T 1hx8_A 71 NANWVVVYKSLITTHHLMAYGNERFMQYL----ASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNE 146 (299)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSCHHHHHHH----HHTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHH----HhCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHHH
Confidence 99999999999999999999999987765 33667999999999865 4578999999999999999
Q ss_pred HHHHHhhhccccccc-----CCccCCCCHHHHHhhHHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 037435 155 RVECFRILRYDVEKS-----HMGSGRLSIPDLLDQLPSLQQLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSIT 229 (583)
Q Consensus 155 RL~~~r~~~~d~~~~-----~~r~r~l~~e~LL~~L~~LQ~LLdrlL~crP~g~a~~N~lil~Al~llvkDSf~LY~~in 229 (583)
|+.+|+..++|+++. .+++++|+++.||++++.||+||+++++|+|.+.+.+|+|+++||++||+|||+||+++|
T Consensus 147 r~~~f~~~~~d~~~~~~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~~lY~~i~ 226 (299)
T 1hx8_A 147 KSLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYN 226 (299)
T ss_dssp HHHHHHHHSSCGGGC-----CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 998899999988642 567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCChhhHHHHHHHHHHHHHhHHHHHHHHHHhhhcccccccccccCCCCChhhHHHHHHHHHh
Q 037435 230 DGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFEICRELDFGRGQKYIKIEKPPASFMTAMEDYVKV 302 (583)
Q Consensus 230 dgii~LLe~fFeM~k~da~kaLeiYkRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~~L~~LEEylrd 302 (583)
+||+||||+||+|++.||++||+||+||.+|+++|++||++||++++.+ ++||+|+++|++||++|||||++
T Consensus 227 ~gi~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~~Lee~l~~ 298 (299)
T 1hx8_A 227 DGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT 298 (299)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999976 89999999999999999999986
No 2
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=100.00 E-value=9.2e-67 Score=541.08 Aligned_cols=261 Identities=25% Similarity=0.460 Sum_probs=229.5
Q ss_pred chHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHH
Q 037435 34 KGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEE 113 (583)
Q Consensus 34 ~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~ee 113 (583)
+++++||+|||+|+++|||+||||+||.+|+.++ +++.+|++.|.+|++ ++||+|+||+|||+|||||+|+|.|.+
T Consensus 27 s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~--~~~~~i~~~L~~Rl~-~~~w~vv~KaLivlH~llreG~~~~l~- 102 (310)
T 3zym_A 27 SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTT-NSSWVVVFKSLITTHHLMVYGNERFIQ- 102 (310)
T ss_dssp HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHSCHHHHH-
T ss_pred cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCC--CcHHHHHHHHHhhcC-CCchHHHHHHHHHHHHHHhcCCHHHHH-
Confidence 8999999999999999999999999999999875 678999999999997 899999999999999999999998765
Q ss_pred HHHHhhcCCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhccccccc----CCccCCCCHHHHHhhHHHHH
Q 037435 114 LINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECFRILRYDVEKS----HMGSGRLSIPDLLDQLPSLQ 189 (583)
Q Consensus 114 ll~y~r~r~~iL~Ls~F~D~Ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~d~~~~----~~r~r~l~~e~LL~~L~~LQ 189 (583)
|+++++++|+|++|+|++++.+|||+.|||+|++||++|+.+|+.+++|+++. .+++++++++.||++++.||
T Consensus 103 ---~~~~~~~~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL~~Rl~~f~~~~~d~~~~~~~~~~~~r~~~~~~Ll~~l~~lQ 179 (310)
T 3zym_A 103 ---YLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMNTEKLLKTVPIIQ 179 (310)
T ss_dssp ---HHHHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCTTTSCCSTTSHHHHCCHHHHHHHHHHHH
T ss_pred ---HHHhCCCeeecccccCCCCcCcccccHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCccccCCHHHHHHHHHHHH
Confidence 44556689999999999887789999999999999999999999999988643 45678899999999999999
Q ss_pred HHHHHHhcCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhHHHHHHHHH
Q 037435 190 QLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFE 269 (583)
Q Consensus 190 ~LLdrlL~crP~g~a~~N~lil~Al~llvkDSf~LY~~indgii~LLe~fFeM~k~da~kaLeiYkRf~kQ~e~L~~Fy~ 269 (583)
+||+++++|+|.+.+.+|+|+++||++||+|||+||+++|+|||+|||+||||++.||++||+||+||.+|+++|++||+
T Consensus 180 ~lid~ll~~~~~~~~~~N~l~~~A~~llv~ds~~lY~~inegii~lLe~ffem~~~da~~al~iykrf~~Q~e~L~~Fy~ 259 (310)
T 3zym_A 180 NQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLK 259 (310)
T ss_dssp HHHHHHHTSCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccccccccCCCCChhhHHHHHHHHHh
Q 037435 270 ICRELDFGRGQKYIKIEKPPASFMTAMEDYVKV 302 (583)
Q Consensus 270 ~ck~l~~~r~~~iP~L~~~P~~~L~~LEEylrd 302 (583)
+||++|+.+. +||+|+++|+++++.+|.-|.+
T Consensus 260 ~ck~l~l~~~-~iP~L~~~p~d~l~~lq~~i~e 291 (310)
T 3zym_A 260 VAEQVGIDRG-DISGSGSGHMDRVRNLQSEVEG 291 (310)
T ss_dssp HHHHTC-------------------CHHHHHHH
T ss_pred HHHHcCCCCC-CCCCCCcccchHHHHHHHHHHH
Confidence 9999997765 9999999999999999998887
No 3
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=100.00 E-value=1.8e-64 Score=515.01 Aligned_cols=239 Identities=26% Similarity=0.497 Sum_probs=225.8
Q ss_pred chHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHH
Q 037435 34 KGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEE 113 (583)
Q Consensus 34 ~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~ee 113 (583)
+++++||+|||+|+++|||+||||+||.+|+.++ +++..|++.|.+|++ ++||+|+||+|||+|||||+|+|.|.++
T Consensus 27 s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~--~~~~~~~~~L~~Rl~-~~~w~v~~KaLivlH~llreG~~~~l~~ 103 (271)
T 3zyl_A 27 SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTT-NSSWVVVFKSLITTHHLMVYGNERFIQY 103 (271)
T ss_dssp HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTT--SCHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCC--CcHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 8999999999999999999999999999999864 678999999999997 8999999999999999999999987654
Q ss_pred HHHHhhcCCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhccccccc----CCccCCCCHHHHHhhHHHHH
Q 037435 114 LINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVECFRILRYDVEKS----HMGSGRLSIPDLLDQLPSLQ 189 (583)
Q Consensus 114 ll~y~r~r~~iL~Ls~F~D~Ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~d~~~~----~~r~r~l~~e~LL~~L~~LQ 189 (583)
+++++++|+|++|+|++++.+|||++|||+|++||++|+.+|+.+++|++.. .+++++|++++||++++.||
T Consensus 104 ----~~~~~~~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL~eRl~~f~~~~~d~~~~k~~~~~~~r~~~~~~Ll~~l~~lQ 179 (271)
T 3zyl_A 104 ----LASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMNTEKLLKTVPIIQ 179 (271)
T ss_dssp ----HHHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTSCCSTTSHHHHCCHHHHHHHHHHHH
T ss_pred ----HHhCCCeechhccCCCCCCCcccccHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCccccCCHHHHHHHHHHHH
Confidence 4546689999999999877889999999999999999999999999988643 45678899999999999999
Q ss_pred HHHHHHhcCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhHHHHHHHHH
Q 037435 190 QLLFRLLGCKPQGAALYNNLIHYALSIIASESVKLYVSITDGILKLVDKYFEMPRHDAVRTLEIYRKSESQADSLTSLFE 269 (583)
Q Consensus 190 ~LLdrlL~crP~g~a~~N~lil~Al~llvkDSf~LY~~indgii~LLe~fFeM~k~da~kaLeiYkRf~kQ~e~L~~Fy~ 269 (583)
+||+++++|+|.+.+.+|+|+++||++||+|||+||+.+|+|||||||+||||++.||++||+||+||.+|+++|++||+
T Consensus 180 ~lld~ll~~~~~~~~~~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ffem~~~da~~aleiykrf~~Q~~~L~~Fy~ 259 (271)
T 3zyl_A 180 NQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLK 259 (271)
T ss_dssp HHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhcccccc
Q 037435 270 ICRELDFGRG 279 (583)
Q Consensus 270 ~ck~l~~~r~ 279 (583)
+||++|++|+
T Consensus 260 ~ck~~gi~~~ 269 (271)
T 3zyl_A 260 VAEQVGIDRG 269 (271)
T ss_dssp HHHHTTCCGG
T ss_pred HHHHcCcCcC
Confidence 9999999886
No 4
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=99.48 E-value=1.6e-13 Score=127.58 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=97.5
Q ss_pred CCchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHhhCChhh
Q 037435 32 ENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAK-THSWTVALKTLIVIHRALREVDHSF 110 (583)
Q Consensus 32 ~~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~k-TrnWiValKtLIllHrLLreG~p~f 110 (583)
++++.++.|..|||++.++|+.+++.+|..+|+.. .++..++..|++||.. .++|++++|+|+|+|.||+.|++.|
T Consensus 2 ~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~---~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~v 78 (144)
T 1eyh_A 2 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV---VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV 78 (144)
T ss_dssp CCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSH---HHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCH---hhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHH
Confidence 47899999999999999999999999999999874 5678899999999964 3699999999999999999999998
Q ss_pred HHHHHHHhhcCCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHH
Q 037435 111 CEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVE 157 (583)
Q Consensus 111 ~eell~y~r~r~~iL~Ls~F~D~Ss~~s~d~safVR~Ya~YLdeRL~ 157 (583)
..++...+ ..+..|.+|.=.. ..+.|.|..||.+|++|-+-|.
T Consensus 79 v~~~~~~~---~~i~~L~~F~y~d-~~g~D~G~~VR~kak~l~~Ll~ 121 (144)
T 1eyh_A 79 SQQCKENM---YAVQTLKDFQYVD-RDGKDQGVNVREKAKQLVALLR 121 (144)
T ss_dssp HHHHHHTH---HHHHGGGGCCCBC-TTSCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh---HHHhhhccceeeC-CCccchHHHHHHHHHHHHHHHC
Confidence 76654222 1366778774211 2467899999999999955443
No 5
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=99.46 E-value=2.9e-13 Score=126.43 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=98.7
Q ss_pred CCchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHhhCChhh
Q 037435 32 ENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAK-THSWTVALKTLIVIHRALREVDHSF 110 (583)
Q Consensus 32 ~~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~k-TrnWiValKtLIllHrLLreG~p~f 110 (583)
++++.++.|..|||++.++|+.+++.+|..+|+.. .++..++..|++||.. .++|++++|+|+|+|.||+.|++.|
T Consensus 20 ~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~---~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~v 96 (148)
T 1inz_A 20 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV---VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV 96 (148)
T ss_dssp SCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSS---HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH---hhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHH
Confidence 57999999999999999999999999999999985 5678899999999974 3699999999999999999999998
Q ss_pred HHHHHHHhhcCCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHH
Q 037435 111 CEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERVE 157 (583)
Q Consensus 111 ~eell~y~r~r~~iL~Ls~F~D~Ss~~s~d~safVR~Ya~YLdeRL~ 157 (583)
..++...+ ..+..|.+|.=.. ..+.|.|..||.||++|-+-|.
T Consensus 97 v~~~r~~~---~~I~~L~~F~y~d-~~g~D~G~nVR~kAk~l~~LL~ 139 (148)
T 1inz_A 97 SQQCKENM---YAVQTLKDFQYVD-RDGKDQGVNVREKAKQLVALLR 139 (148)
T ss_dssp HHHHHHTH---HHHHHHHHCCCCC-SSCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhH---HHHHhhcceeeeC-CCCcCchHHHHHHHHHHHHHhC
Confidence 76654222 1356677753211 2467899999999999988765
No 6
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=99.20 E-value=1.3e-10 Score=111.26 Aligned_cols=119 Identities=16% Similarity=0.170 Sum_probs=94.9
Q ss_pred CCCchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhh-c-cCCChHHHHHHHHHHHHHHhhCCh
Q 037435 31 SENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRL-A-KTHSWTVALKTLIVIHRALREVDH 108 (583)
Q Consensus 31 ~~~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL-~-kTrnWiValKtLIllHrLLreG~p 108 (583)
..+++.++.|..|||.+.++|..+++.+|..+|+.. .++..++..|++|| . +.++|++++|+|+|++.||+.|++
T Consensus 30 ~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~---~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse 106 (176)
T 1xgw_A 30 MNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMY---EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSE 106 (176)
T ss_dssp CCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCT---TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCH
T ss_pred cCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCH
Confidence 357999999999999999999999999999999986 46789999999996 4 358999999999999999999998
Q ss_pred hhHHHHHHHhhcCCCccccccccCCCCCCCcchhHHHHHHHHHHHHHH
Q 037435 109 SFCEELINYSRGRALMFNLSHFRDESSPVAWDHSAWIRNYALYLEERV 156 (583)
Q Consensus 109 ~f~eell~y~r~r~~iL~Ls~F~D~Ss~~s~d~safVR~Ya~YLdeRL 156 (583)
.|.+++...+. .+-.|.+|.=. ...+.|.+..||..|+.|-+-|
T Consensus 107 ~vv~~~r~~i~---~I~~L~~F~y~-D~~G~D~G~~VR~kAk~i~~LL 150 (176)
T 1xgw_A 107 RVVTSAREHIY---DLRSLENYHFV-DEHGKDQGINIRQKVKELVEFA 150 (176)
T ss_dssp HHHHHHHHTHH---HHHGGGGCCCB-CTTSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHH---HHHhhccCeeE-CCCCCChHHHHHHHHHHHHHHH
Confidence 88766532111 12346666421 1246789999999999984433
No 7
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=99.17 E-value=1.4e-10 Score=108.44 Aligned_cols=119 Identities=13% Similarity=0.189 Sum_probs=93.6
Q ss_pred ccCCCchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccC--CChHHHHHHHHHHHHHHhhC
Q 037435 29 LNSENKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKT--HSWTVALKTLIVIHRALREV 106 (583)
Q Consensus 29 v~~~~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kT--rnWiValKtLIllHrLLreG 106 (583)
|--.+++.++.|..|||.+.++|..+++.+|..+|+.. .++..++..|++||... ++|++++|+|+|++.||+.|
T Consensus 5 ~v~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~---~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nG 81 (150)
T 3onk_A 5 VDPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNF---REREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHG 81 (150)
T ss_dssp ---CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSH---HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHS
T ss_pred hhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhC
Confidence 33468999999999999999999999999999999874 45678999999999742 58999999999999999999
Q ss_pred ChhhHHHHHHHhhcCCC-ccccccccCCCCCCCcchhHHHHHHHHHHHHH
Q 037435 107 DHSFCEELINYSRGRAL-MFNLSHFRDESSPVAWDHSAWIRNYALYLEER 155 (583)
Q Consensus 107 ~p~f~eell~y~r~r~~-iL~Ls~F~D~Ss~~s~d~safVR~Ya~YLdeR 155 (583)
++.|..++ +.+.. +-.|.+|.=.. ..+.|.+.-||..|+.|-+-
T Consensus 82 se~vv~~~----r~~~~~i~~L~~F~~~d-~~G~D~G~~VR~kak~l~~L 126 (150)
T 3onk_A 82 SERFIDDT----RNSINLIRILETFHYID-SQGRDQGINVRTRVKALIEL 126 (150)
T ss_dssp CHHHHHHH----HTTHHHHHGGGGCCCBC-TTSCBCHHHHHHHHHHHHHH
T ss_pred CHHHHHHH----HHHHHHHHhhhcccccC-CCCCchHHHHHHHHHHHHHH
Confidence 99887664 32222 23366654211 23678999999999998443
No 8
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.37 E-value=3.4e-06 Score=77.96 Aligned_cols=115 Identities=20% Similarity=0.172 Sum_probs=90.6
Q ss_pred HHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHHHHH
Q 037435 37 DIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEELIN 116 (583)
Q Consensus 37 dvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~eell~ 116 (583)
++-|.+||+.++.||----+.+|...|+.+.. ..+..++..|.+||. .++|.|.+|+|-+|-.|++.|++.|+.++..
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~-~~~~eim~~L~kRL~-~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHV-SIVKEFSEFILKRLD-NKSPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhc-CCCcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 45689999999999888888999999988631 123678899999996 4799999999999999999999999876542
Q ss_pred HhhcCCCccccccccCCCCC-CCcchhHHHHHHHHHHHHHH
Q 037435 117 YSRGRALMFNLSHFRDESSP-VAWDHSAWIRNYALYLEERV 156 (583)
Q Consensus 117 y~r~r~~iL~Ls~F~D~Ss~-~s~d~safVR~Ya~YLdeRL 156 (583)
.+. .+-.+.+|+..-.+ .+.+.+..||.-|+=|-+-|
T Consensus 91 ~~~---~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 91 NSV---AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp TTH---HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 221 25567778755433 47899999999988776654
No 9
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=95.57 E-value=0.063 Score=50.00 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=67.9
Q ss_pred chHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHH
Q 037435 34 KGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEE 113 (583)
Q Consensus 34 ~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~ee 113 (583)
..++..|.|||+....-|+--.+-+|........ .....++++|.+||...+|..|++-+|.|+.-|+..+.+.|..+
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~--~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~e 92 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETE--EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVL 92 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3789999999999988888888888888887653 45689999999999646899999999999999999998888766
Q ss_pred H
Q 037435 114 L 114 (583)
Q Consensus 114 l 114 (583)
+
T Consensus 93 v 93 (157)
T 1elk_A 93 V 93 (157)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=95.28 E-value=0.084 Score=48.25 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=67.0
Q ss_pred chHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHH
Q 037435 34 KGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEE 113 (583)
Q Consensus 34 ~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~ee 113 (583)
..++..|.|||+....-++--.+-+|....... + .....++++|.+||. .+|-.|++-+|.|+.-|+..+.+.|..+
T Consensus 4 ~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~-~-~~~k~a~rai~Krl~-~~n~~~ql~AL~LLe~~vkNcG~~f~~e 80 (140)
T 3ldz_A 4 NPFDQDVEKATSEMNTAEDWGLILDICDKVGQS-R-TGPKDCLRSIMRRVN-HKDPHVAMQALTLLGACVSNCGKIFHLE 80 (140)
T ss_dssp CTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTS-T-THHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCC-C-cCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 457889999999998889999999998888765 3 456889999999995 5899999999999999999999888755
Q ss_pred H
Q 037435 114 L 114 (583)
Q Consensus 114 l 114 (583)
+
T Consensus 81 v 81 (140)
T 3ldz_A 81 V 81 (140)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=95.26 E-value=0.076 Score=49.82 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=66.8
Q ss_pred chHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHH
Q 037435 34 KGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEE 113 (583)
Q Consensus 34 ~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~ee 113 (583)
..++..|.|||+....-|+--.+-+|........ .....++++|.+||. .+|-.|++-+|.|+.-|+..+...|..+
T Consensus 14 ~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~--~~~keA~ral~krl~-~~n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 14 NPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTP--NGAKDCLKAIMKRVN-HKVPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4588999999999888889999999888887653 456889999999995 5889999999999999999988888755
Q ss_pred H
Q 037435 114 L 114 (583)
Q Consensus 114 l 114 (583)
+
T Consensus 91 v 91 (163)
T 1x5b_A 91 V 91 (163)
T ss_dssp H
T ss_pred H
Confidence 4
No 12
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=95.23 E-value=0.095 Score=48.76 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=69.2
Q ss_pred CchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHH
Q 037435 33 NKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCE 112 (583)
Q Consensus 33 ~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~e 112 (583)
...++..|.|||+....-|+--.+-+|........ .....++++|.+||...+|..|++-+|.|+.-|+..+...|..
T Consensus 14 ~t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~--~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~ 91 (152)
T 3rru_A 14 ATSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQ--DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQS 91 (152)
T ss_dssp GSHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 36799999999999988889889888888887653 4568999999999965568999999999999999999999987
Q ss_pred HH
Q 037435 113 EL 114 (583)
Q Consensus 113 el 114 (583)
++
T Consensus 92 ei 93 (152)
T 3rru_A 92 LI 93 (152)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 13
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=95.19 E-value=0.11 Score=48.19 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=69.0
Q ss_pred CchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHH
Q 037435 33 NKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCE 112 (583)
Q Consensus 33 ~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~e 112 (583)
...++..|.|||+....-|+--.+-+|........ .....++++|.+||. .+|..|++-+|.|+.-|+..+...|..
T Consensus 9 ~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~--~~pk~a~ral~krl~-~~n~~v~l~AL~LLe~cvkNCG~~fh~ 85 (149)
T 3g2s_A 9 PETLEARINRATNPLNKELDWASINGFCEQLNEDF--EGPPLATRLLAHKIQ-SPQEWEAIQALTVLETCMKSCGKRFHD 85 (149)
T ss_dssp CCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSS--SHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCC--CcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 46799999999999988889999988888887653 456889999999995 799999999999999999999988866
Q ss_pred HH
Q 037435 113 EL 114 (583)
Q Consensus 113 el 114 (583)
++
T Consensus 86 ei 87 (149)
T 3g2s_A 86 EV 87 (149)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 14
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=95.10 E-value=0.078 Score=50.15 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=67.7
Q ss_pred CchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHH
Q 037435 33 NKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCE 112 (583)
Q Consensus 33 ~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~e 112 (583)
...++..|.|||+....-++--.+-+|........ .....++++|.+||. .+|-.|++-+|.|+.-|+..+...|..
T Consensus 11 ~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~--~~~k~A~ral~krl~-~~n~~vql~AL~LLd~~vkNCG~~Fh~ 87 (171)
T 1juq_A 11 GESLESWLNKATNPSNRQEDWEYIIGFCDQINKEL--EGPQIAVRLLAHKIQ-SPQEWEALQALTVLEACMKNCGRRFHN 87 (171)
T ss_dssp -CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 35799999999999988899999999988887763 456889999999995 689999999999999999998888865
Q ss_pred HH
Q 037435 113 EL 114 (583)
Q Consensus 113 el 114 (583)
++
T Consensus 88 ev 89 (171)
T 1juq_A 88 EV 89 (171)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 15
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=95.04 E-value=0.087 Score=48.70 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=65.9
Q ss_pred HHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHHH
Q 037435 36 LDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEEL 114 (583)
Q Consensus 36 LdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~eel 114 (583)
++..|.|||+....-|+--.+-+|........ .....++++|.+|| +.+|-.|++-+|.|+.-|+..+.+.|..++
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~--~~~k~a~rai~krl-~~~n~~vql~AL~LLe~~vkNCG~~fh~ev 77 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDP--NGPTHAPWLLAHKI-QSPQEKEALYALTVLEMCMNHCGEKFHSEV 77 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSS--HHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 67889999999888899888888888887653 45678999999999 479999999999999999999988887654
No 16
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=94.51 E-value=0.16 Score=49.88 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=68.0
Q ss_pred CchHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHH
Q 037435 33 NKGLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCE 112 (583)
Q Consensus 33 ~~dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~e 112 (583)
.+.++..|.|||+....-|+--.+-+|-....... .....++++|.+||. .+|-.|++-+|.|+.-++..+...|..
T Consensus 6 ~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~--~~~k~a~ral~krl~-~~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 6 SGTFERLLDKATSQLLLETDWESILQICDLIRQGD--TQAKYAVNSIKKKVN-DKNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp -CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 46899999999999988899999999888887642 456889999999995 689999999999999999999988865
Q ss_pred HH
Q 037435 113 EL 114 (583)
Q Consensus 113 el 114 (583)
++
T Consensus 83 ei 84 (226)
T 3zyq_A 83 EV 84 (226)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=94.15 E-value=0.17 Score=49.23 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=66.0
Q ss_pred hHHHHHHhhcCCCCCCCchhHHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCChhhHHHH
Q 037435 35 GLDIAIVKATNHDEVLPKEKHISKILEAVLASRPRADVAYCIQSLAKRLAKTHSWTVALKTLIVIHRALREVDHSFCEEL 114 (583)
Q Consensus 35 dLdvAIvKAT~hde~PPKeKHVr~Il~~T~~~rp~a~v~~~v~aL~rRL~kTrnWiValKtLIllHrLLreG~p~f~eel 114 (583)
.++..|.|||+....-|+-..+-+|........ .....++++|.+||. .+|-.|++-+|.|+.-++..+...|..++
T Consensus 5 ~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~--~~~k~a~r~l~krl~-~~n~~~~l~aL~Lle~~vkNcG~~f~~ev 81 (220)
T 1dvp_A 5 SFCKNLENATSHLRLEPDWPSILLICDEINQKD--VTPKNAFAAIKKKMN-SPNPHSSCYSLLVLESIVKNCGAPVHEEV 81 (220)
T ss_dssp HHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCC--cCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 388999999999988899999999988887653 456889999999995 68999999999999999999887776543
No 18
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=55.68 E-value=2.2 Score=44.74 Aligned_cols=13 Identities=8% Similarity=0.043 Sum_probs=6.9
Q ss_pred CHHHHHhhHHHHH
Q 037435 177 SIPDLLDQLPSLQ 189 (583)
Q Consensus 177 ~~e~LL~~L~~LQ 189 (583)
|.++|++....|.
T Consensus 128 Twdel~~~a~~l~ 140 (449)
T 3iot_A 128 TWEEIPALDKELK 140 (449)
T ss_dssp BGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4466666554443
No 19
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=53.84 E-value=3.5 Score=43.19 Aligned_cols=12 Identities=17% Similarity=0.050 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHH
Q 037435 245 HDAVRTLEIYRK 256 (583)
Q Consensus 245 ~da~kaLeiYkR 256 (583)
.+.+++|+.|++
T Consensus 186 ~~~~~al~~~~~ 197 (449)
T 3iot_A 186 AGAKAGLTFLVD 197 (449)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444455544443
No 20
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=51.41 E-value=5.8 Score=25.86 Aligned_cols=13 Identities=38% Similarity=0.532 Sum_probs=10.6
Q ss_pred HHHHHHHhhCChh
Q 037435 97 IVIHRALREVDHS 109 (583)
Q Consensus 97 IllHrLLreG~p~ 109 (583)
-++||||++|+|.
T Consensus 13 kILHrLLQ~~sP~ 25 (26)
T 3bej_E 13 KILHRLLQEGSPS 25 (26)
T ss_pred HHHHHHHHcCCCC
Confidence 3689999999874
No 21
>2prg_C Nuclear receptor coactivator SRC-1, peroxisome proliferator activated receptor gamma; complex (thiazolidinedione/receptor), ligand-binding domain; HET: BRL; 2.30A {Homo sapiens} SCOP: j.112.1.1
Probab=25.65 E-value=24 Score=29.60 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=10.5
Q ss_pred HHHHHHhhCChh
Q 037435 98 VIHRALREVDHS 109 (583)
Q Consensus 98 llHrLLreG~p~ 109 (583)
++||||++|.|.
T Consensus 67 ILHrLLQ~gSP~ 78 (88)
T 2prg_C 67 ILHRLLQEGSPS 78 (88)
T ss_dssp HHHHHHHSSCCC
T ss_pred HHHHHHhcCChH
Confidence 589999999875
Done!