BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037436
MAKSHSRSPRLSISRSISRVRVHSPSLQRKKVSKNSVETDQNVEFLGGGNAEEVEYVGNE
SSGSERYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKL
YLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIV
WTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSSKLGGYLITTKRHKNFWLLA

High Scoring Gene Products

Symbol, full name Information P value
AT5G17390 protein from Arabidopsis thaliana 2.7e-45
AT3G03290 protein from Arabidopsis thaliana 3.3e-45
MRH6
AT2G03720
protein from Arabidopsis thaliana 1.1e-37
AT1G69080 protein from Arabidopsis thaliana 1.7e-36
AT4G13450 protein from Arabidopsis thaliana 4.5e-20
AT1G44760 protein from Arabidopsis thaliana 3.1e-12
AT1G48960 protein from Arabidopsis thaliana 8.2e-08
RD2
AT2G21620
protein from Arabidopsis thaliana 6.2e-07

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037436
        (236 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2178920 - symbol:AT5G17390 "AT5G17390" species...   476  2.7e-45   1
TAIR|locus:2097735 - symbol:AT3G03290 "AT3G03290" species...   439  3.3e-45   2
TAIR|locus:2044274 - symbol:MRH6 "AT2G03720" species:3702...   404  1.1e-37   1
TAIR|locus:2033245 - symbol:AT1G69080 "AT1G69080" species...   393  1.7e-36   1
TAIR|locus:2142130 - symbol:AT4G13450 "AT4G13450" species...   157  4.5e-20   2
TAIR|locus:2194824 - symbol:AT1G44760 "AT1G44760" species...   164  3.1e-12   1
TAIR|locus:2028516 - symbol:AT1G48960 "AT1G48960" species...   136  8.2e-08   1
TAIR|locus:2049334 - symbol:RD2 "AT2G21620" species:3702 ...   127  6.2e-07   1


>TAIR|locus:2178920 [details] [associations]
            symbol:AT5G17390 "AT5G17390" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND]
            InterPro:IPR006016 Pfam:PF00582 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0006950 EMBL:AL391142
            Gene3D:3.40.50.620 InterPro:IPR014729 IPI:IPI00526861 PIR:T51576
            RefSeq:NP_197241.1 UniGene:At.54883 ProteinModelPortal:Q9LF45
            PRIDE:Q9LF45 EnsemblPlants:AT5G17390.1 GeneID:831605
            KEGG:ath:AT5G17390 TAIR:At5g17390 eggNOG:NOG306824
            HOGENOM:HOG000238524 InParanoid:Q9LF45 OMA:LEWAITH PhylomeDB:Q9LF45
            ProtClustDB:CLSN2684080 Genevestigator:Q9LF45 Uniprot:Q9LF45
        Length = 285

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 104/208 (50%), Positives = 142/208 (68%)

Query:    38 ETDQNVEF-LGGGNAEE-----VEYVGNESSGSERYGNKVMVVADSSLDAKGALEWALSH 91
             E D    F +GGG  ++     VE V  E+ G    GN+VMVV D +L + GALEWA++H
Sbjct:    84 EQDDAKSFNIGGGEGKKEAVAAVEAVEEEAEG----GNRVMVVVDKALASTGALEWAITH 139

Query:    92 TVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEG 151
             T+Q QDT+ LLY  AK  ++ K  K +K  ++  E +H++K  CQ K+PG++VEI   EG
Sbjct:   140 TLQPQDTLFLLY-FAKPFRKSKR-KNRKREVKTDELVHTLKKLCQTKRPGIEVEIRRLEG 197

Query:   152 KEK--GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGD-IADYCIQNSSRM 208
             K+K  G  IVEE+K+Q VSLLV+GQ +K  VW L+ RW+ K++   + +  YC++N+S M
Sbjct:   198 KDKDKGQKIVEESKKQQVSLLVVGQEKKPPVWRLLKRWAWKRRRGHEGVLKYCLENASCM 257

Query:   209 TIAVRRKSSKLGGYLITTKRHKNFWLLA 236
             TIAV+ K+ KLGGYLITTKRHKNFWLLA
Sbjct:   258 TIAVKPKNRKLGGYLITTKRHKNFWLLA 285


>TAIR|locus:2097735 [details] [associations]
            symbol:AT3G03290 "AT3G03290" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0002238 "response to molecule of
            fungal origin" evidence=RCA] InterPro:IPR006016 Pfam:PF00582
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006950 GO:GO:0016787
            Gene3D:3.40.50.620 InterPro:IPR014729 EMBL:AC012328
            HOGENOM:HOG000238524 ProtClustDB:CLSN2684080 EMBL:DQ056584
            IPI:IPI00530167 RefSeq:NP_186979.1 UniGene:At.53167
            ProteinModelPortal:Q9M9P7 EnsemblPlants:AT3G03290.1 GeneID:821301
            KEGG:ath:AT3G03290 TAIR:At3g03290 eggNOG:NOG297897
            InParanoid:Q9M9P7 OMA:CLEKASC PhylomeDB:Q9M9P7
            Genevestigator:Q9M9P7 Uniprot:Q9M9P7
        Length = 274

 Score = 439 (159.6 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 92/173 (53%), Positives = 121/173 (69%)

Query:    68 GNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEK 127
             GN+VMVV D  + + GALEWAL HT+Q QD + LLY  +K  ++ K  K +K  ++  E 
Sbjct:   105 GNRVMVVVDKVIASTGALEWALKHTLQSQDYLFLLY-FSKPFRKGKR-KNRKSEVKTDEL 162

Query:   128 LHSMKSTCQLKKPGVQVEIAITEGKEK--GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMN 185
             +H++K  CQ K+PG++VEI   +GKEK  G  IVEEAK Q VSLLV+G+ +K  VW L+ 
Sbjct:   163 VHTLKKLCQTKRPGIEVEIRRLQGKEKEKGEKIVEEAKEQQVSLLVVGKEKKPPVWRLLK 222

Query:   186 RWSSKKKA--VGDIADYCIQNSSRMTIAVRRKSSKLGGYLITTKRHKNFWLLA 236
             RW  KK+    G +  YC++ +S MTIAV+ K+ KLGGYLITTKRHKNFWLLA
Sbjct:   223 RWGWKKRRGRAGTLK-YCLEKASCMTIAVKPKNRKLGGYLITTKRHKNFWLLA 274

 Score = 53 (23.7 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query:    31 KVSKNSVETDQNVEFLGGGNAEEVEYVGNESSGSERY 67
             K   +S+E DQ +EFLG    EE +  G+ +S  E +
Sbjct:    26 KPDSSSIEIDQRIEFLG---EEETD--GDSTSEYEEF 57


>TAIR|locus:2044274 [details] [associations]
            symbol:MRH6 "AT2G03720" species:3702 "Arabidopsis
            thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0048765
            "root hair cell differentiation" evidence=RCA;IMP] [GO:0002238
            "response to molecule of fungal origin" evidence=RCA] [GO:0010054
            "trichoblast differentiation" evidence=RCA] [GO:0048527 "lateral
            root development" evidence=RCA] [GO:0048589 "developmental growth"
            evidence=RCA] [GO:0048767 "root hair elongation" evidence=RCA]
            InterPro:IPR006016 Pfam:PF00582 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0006950 GO:GO:0016787 EMBL:AC006836
            GO:GO:0048765 Gene3D:3.40.50.620 InterPro:IPR014729
            HOGENOM:HOG000238524 EMBL:BT010857 EMBL:BT020330 IPI:IPI00547793
            PIR:E84451 RefSeq:NP_178467.1 UniGene:At.41377
            ProteinModelPortal:Q9ZPQ9 STRING:Q9ZPQ9 EnsemblPlants:AT2G03720.1
            GeneID:814899 KEGG:ath:AT2G03720 TAIR:At2g03720 eggNOG:NOG265707
            InParanoid:Q9ZPQ9 OMA:TQRERNS PhylomeDB:Q9ZPQ9
            ProtClustDB:CLSN2913275 ArrayExpress:Q9ZPQ9 Genevestigator:Q9ZPQ9
            Uniprot:Q9ZPQ9
        Length = 165

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 81/166 (48%), Positives = 112/166 (67%)

Query:    72 MVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSM 131
             MVV D++   K AL+WAL+H VQ +D I LL+V      Q  +   ++   RA+E +H +
Sbjct:     1 MVVVDTTSQTKNALQWALTHCVQDEDNITLLHVTRTPVGQAIDETQRERNSRAHELVHPL 60

Query:   132 KSTCQLKKPGVQVEIAITE-GKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSK 190
             K+ CQLKKP V+ EI + E  +EKG  IVEE+K+Q   +LVLGQR+++  W ++ +W +K
Sbjct:    61 KNFCQLKKPNVKTEIVVVETAEEKGKTIVEESKKQGAGVLVLGQRKRTSKWRVIWKWRTK 120

Query:   191 KKAVGDIADYCIQNSSRMTIAVRRKSSKLGGYLITTKRHKNFWLLA 236
                 G + +YCI NS  M IAVR+KS+  GGYLITTKRHK+FWLLA
Sbjct:   121 GGMGGGVVEYCIHNSDCMAIAVRKKSNN-GGYLITTKRHKDFWLLA 165


>TAIR|locus:2033245 [details] [associations]
            symbol:AT1G69080 "AT1G69080" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0002238
            "response to molecule of fungal origin" evidence=RCA]
            InterPro:IPR006016 Pfam:PF00582 EMBL:CP002684 GO:GO:0006950
            GO:GO:0016787 EMBL:AC008262 Gene3D:3.40.50.620 InterPro:IPR014729
            EMBL:BT024838 IPI:IPI00546875 RefSeq:NP_564951.1 UniGene:At.43260
            ProteinModelPortal:Q9LQB2 EnsemblPlants:AT1G69080.1 GeneID:843240
            KEGG:ath:AT1G69080 TAIR:At1g69080 InParanoid:Q9LQB2 OMA:FVEYCIN
            PhylomeDB:Q9LQB2 ProtClustDB:CLSN2689094 Genevestigator:Q9LQB2
            Uniprot:Q9LQB2
        Length = 223

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 82/181 (45%), Positives = 119/181 (65%)

Query:    68 GNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVI-AKSSKQ---VKETKG------ 117
             G +++VV DS  +AK AL W LSH  Q QD+I+LL+ + AK+S+      + +G      
Sbjct:    43 GRRIIVVVDSCSEAKNALLWTLSHCAQPQDSILLLHFLKAKTSQSGDLANKEEGEDESCD 102

Query:   118 KKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRK 177
             K    RA +K+ ++K+ C+LK+P V+ E+   +G EKGP IV+EA+ +  SLLVLGQ+++
Sbjct:   103 KPTTSRADKKVSALKTMCELKRPEVKTEVVFVKGDEKGPTIVKEAREREASLLVLGQKKQ 162

Query:   178 SIVWTLMNRWSSKKKAVG--DIADYCIQNSSRMTIAVRRKSSKLGGYLITTKRHKNFWLL 235
                W L+  W+S+ + V   D  +YCI NS  M IAVR++  KLGGY +TTKRHK+FWLL
Sbjct:   163 HATWRLLMVWASQARPVTKHDFVEYCINNSPCMAIAVRKRGKKLGGYTLTTKRHKDFWLL 222

Query:   236 A 236
             A
Sbjct:   223 A 223


>TAIR|locus:2142130 [details] [associations]
            symbol:AT4G13450 "AT4G13450" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0009827 "plant-type cell wall
            modification" evidence=RCA] [GO:0009860 "pollen tube growth"
            evidence=RCA] [GO:0048610 "cellular process involved in
            reproduction" evidence=RCA] [GO:0048868 "pollen tube development"
            evidence=RCA] EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161536
            Gene3D:3.40.50.620 InterPro:IPR014729 EMBL:AL049608 IPI:IPI00535214
            PIR:T06302 RefSeq:NP_193081.1 UniGene:At.33374
            ProteinModelPortal:Q9T0L6 EnsemblPlants:AT4G13450.1 GeneID:826977
            KEGG:ath:AT4G13450 TAIR:At4g13450 HOGENOM:HOG000243481
            InParanoid:Q9T0L6 OMA:LNTKTHK PhylomeDB:Q9T0L6
            ProtClustDB:CLSN2916052 ArrayExpress:Q9T0L6 Genevestigator:Q9T0L6
            Uniprot:Q9T0L6
        Length = 219

 Score = 157 (60.3 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
 Identities = 42/115 (36%), Positives = 62/115 (53%)

Query:   128 LHSMKSTCQLKKPGVQVE---IAITEGKEKGPIIVEEAKRQNVSLLVLGQRR---KSIVW 181
             L  MK  C++ +P V+V    IAI +G  K   I+    +  V ++++GQRR    S++ 
Sbjct:   108 LEQMKRICEIAQPKVRVHTECIAI-DGV-KATAILLHGDKLGVDVIIIGQRRTISSSLLG 165

Query:   182 TLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSSKLGGYLITTKRHKNFWLLA 236
             T     S +     D A+Y I+NS    + V +K    GGY++ TK HKNFWLLA
Sbjct:   166 TRRPGGSLRGSKGVDTAEYLIENSKCTCVGVTKKGQN-GGYVLNTKTHKNFWLLA 219

 Score = 95 (38.5 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query:    58 GNESSGSERYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYV 104
             G   S S     K+MV+AD + ++  AL++ALSH V  QD ++L+++
Sbjct:     4 GRRGSSSTPQSRKIMVIADPTRESAAALQYALSHAVLEQDELILVHI 50


>TAIR|locus:2194824 [details] [associations]
            symbol:AT1G44760 "AT1G44760" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0002238
            "response to molecule of fungal origin" evidence=RCA]
            InterPro:IPR006016 Pfam:PF00582 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0006950 GO:GO:0016787
            Gene3D:3.40.50.620 InterPro:IPR014729 EMBL:AC020576
            UniGene:At.27173 HOGENOM:HOG000238524 EMBL:AY063862 EMBL:BT006061
            IPI:IPI00535970 PIR:E96506 RefSeq:NP_175097.1
            ProteinModelPortal:Q9LPF5 PaxDb:Q9LPF5 PRIDE:Q9LPF5
            EnsemblPlants:AT1G44760.1 GeneID:841040 KEGG:ath:AT1G44760
            TAIR:At1g44760 eggNOG:NOG327624 InParanoid:Q9LPF5 OMA:IQGPKLA
            PhylomeDB:Q9LPF5 ProtClustDB:CLSN2914341 ArrayExpress:Q9LPF5
            Genevestigator:Q9LPF5 Uniprot:Q9LPF5
        Length = 213

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 38/107 (35%), Positives = 63/107 (58%)

Query:   130 SMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSS 189
             S+ S C+  KP V VE  + +G +   ++  + K+  VS+LVLGQ++ + + + +   S 
Sbjct:   112 SLGSLCKACKPEVDVEALVIQGPKLATVL-SQVKKLEVSVLVLGQKKSAPLISCLCGPSR 170

Query:   190 KKKAVGDIADYCIQNSSRMTIAVRRKSSKLGGYLITTKRHKNFWLLA 236
              ++ V    + CI  +  +TI VR++   +GGYLI T+  KNFWLLA
Sbjct:   171 SEELV----NRCINGADCLTIGVRKQCKGVGGYLINTRWQKNFWLLA 213

 Score = 140 (54.3 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 43/150 (28%), Positives = 69/150 (46%)

Query:    30 KKVSKNSVETDQNVEFLGGGNAEEVEYVGNESSGSERYGNK-VMVVADSSLDAKGALEWA 88
             K+ +     T  N +  GGG +      G  S G     +K VMVV D S  +K A+ WA
Sbjct:    23 KRWTSGDSSTAFNDDTSGGGYSSMEGLYGVYSGGDTAARSKRVMVVVDESSRSKHAMMWA 82

Query:    89 LSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAI 148
             L+H     D + LL+V++   +                   S+ S C+  KP V VE  +
Sbjct:    83 LTHLTNKGDLVTLLHVVSPDDEATPSLA------------QSLGSLCKACKPEVDVEALV 130

Query:   149 TEGKEKGPIIVEEAKRQNVSLLVLGQRRKS 178
              +G +   ++  + K+  VS+LVLGQ++ +
Sbjct:   131 IQGPKLATVL-SQVKKLEVSVLVLGQKKSA 159


>TAIR|locus:2028516 [details] [associations]
            symbol:AT1G48960 "AT1G48960" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0002238 "response to molecule
            of fungal origin" evidence=RCA] InterPro:IPR006016 Pfam:PF00582
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006950 GO:GO:0016787
            Gene3D:3.40.50.620 InterPro:IPR014729 UniGene:At.49959
            EMBL:BT025283 EMBL:AK176636 IPI:IPI00540368 RefSeq:NP_564536.1
            UniGene:At.43566 ProteinModelPortal:Q67Y32 PRIDE:Q67Y32
            EnsemblPlants:AT1G48960.1 GeneID:841318 KEGG:ath:AT1G48960
            TAIR:At1g48960 eggNOG:NOG237551 HOGENOM:HOG000090952
            InParanoid:Q67Y32 OMA:LSFKDIC PhylomeDB:Q67Y32
            ProtClustDB:CLSN2688584 Genevestigator:Q67Y32 Uniprot:Q67Y32
        Length = 219

 Score = 136 (52.9 bits), Expect = 8.2e-08, P = 8.2e-08
 Identities = 42/161 (26%), Positives = 78/161 (48%)

Query:    70 KVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLH 129
             +++VV +    A+ AL+WAL + ++  D IVLL+V +   ++ K T  + L    Y    
Sbjct:     6 RIVVVVEDKQAARTALQWALHNLLRQGDVIVLLHVYSPPPRKKKSTAARLLRRHGYNLAL 65

Query:   130 SMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSS 189
             S +  C         EI + EG + G +I +  K    S+L++G  + S ++    RW+ 
Sbjct:    66 SFREICD-SFFNTNTEIIVREGDDDGRMIAQVVKEIGASMLLVGLHQNSFLY----RWAI 120

Query:   190 KKKAVGDIADYCIQNSSRMTIAVRRKSSKLGGYLITTKRHK 230
                 + D+A    +N +   +A+++ S +L    +  K HK
Sbjct:   121 S--GI-DVA----RNFNCKVMAIKQPSPELSPP-VKVKGHK 153


>TAIR|locus:2049334 [details] [associations]
            symbol:RD2 "AT2G21620" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0009269 "response to desiccation"
            evidence=IEP] [GO:0002238 "response to molecule of fungal origin"
            evidence=RCA] [GO:0016036 "cellular response to phosphate
            starvation" evidence=RCA] [GO:0019375 "galactolipid biosynthetic
            process" evidence=RCA] [GO:0042631 "cellular response to water
            deprivation" evidence=RCA] [GO:0005886 "plasma membrane"
            evidence=IDA] InterPro:IPR006016 Pfam:PF00582 GO:GO:0005886
            EMBL:CP002685 GO:GO:0006950 GO:GO:0016787 Gene3D:3.40.50.620
            InterPro:IPR014729 EMBL:AB039925 IPI:IPI00537332 RefSeq:NP_850016.1
            UniGene:At.21377 ProteinModelPortal:Q94II5 IntAct:Q94II5
            PRIDE:Q94II5 EnsemblPlants:AT2G21620.2 GeneID:816700
            KEGG:ath:AT2G21620 TAIR:At2g21620 HOGENOM:HOG000030490
            InParanoid:Q94II5 OMA:DAGKVIC PhylomeDB:Q94II5
            ProtClustDB:CLSN2690847 Genevestigator:Q94II5 Uniprot:Q94II5
        Length = 193

 Score = 127 (49.8 bits), Expect = 6.2e-07, P = 6.2e-07
 Identities = 36/152 (23%), Positives = 75/152 (49%)

Query:    62 SGSERYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLY 121
             SG  R G  V+V  D   ++K A +WAL H  +  DT+ L++ ++ SS  ++  K   +Y
Sbjct:    33 SGERRRGRDVIVAVDHGPNSKHAFDWALVHFCRLADTLHLVHAVS-SSFSLQCVKNDVVY 91

Query:   122 LRAYEKLHSMKSTCQLKKPGVQVEIA-ITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIV 180
               +   +   K   +  +  +   +A + EG + G +I +EA++   + +++G R +S+V
Sbjct:    92 ETSQALME--KLAVEAYQVAMVKSVARVVEG-DAGKVICKEAEKVKPAAVIVGTRGRSLV 148

Query:   181 WTLMNRWSSKKKAVGDIADYCIQNSSRMTIAV 212
              +++          G +++YC  N     + +
Sbjct:   149 RSVLQ---------GSVSEYCFHNCKSAPVII 171


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.128   0.357    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      236       213   0.00084  112 3  11 23  0.41    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  169 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.45u 0.13s 18.58t   Elapsed:  00:00:01
  Total cpu time:  18.45u 0.13s 18.58t   Elapsed:  00:00:01
  Start:  Sat May 11 13:36:55 2013   End:  Sat May 11 13:36:56 2013

Back to top