BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037436
         (236 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6AZT7|NPHP3_XENLA Nephrocystin-3 OS=Xenopus laevis GN=nphp3 PE=2 SV=1
          Length = 1300

 Score = 32.7 bits (73), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 83  GALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKL----HSMKSTCQLK 138
           G +E  L   +QCQDT+ L  ++ +S ++V  +  +K ++R         H+  S C+L 
Sbjct: 701 GKIEDVLQQCLQCQDTVSLYRLVLRSVQEVMPSAKEKEFMREILCFISVSHNGVSECELM 760

Query: 139 K--PGVQVEI 146
           +  PG+  E+
Sbjct: 761 ELCPGLTWEV 770


>sp|P07777|Y1444_ACIAD Uncharacterized protein ACIAD1444 OS=Acinetobacter sp. (strain
           ADP1) GN=ACIAD1444 PE=4 SV=2
          Length = 509

 Score = 32.0 bits (71), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 101 LLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIVE 160
           L  V+   + + +  +   + +RA EKLHSM+    L KP V V   +    +  P  + 
Sbjct: 240 LCTVLCNKNSEQRALQESDVLMRAKEKLHSMQVDVSLLKPPVSVSTQMAREADMNPQAMN 299

Query: 161 EA--KRQNVSLLVL 172
           EA  +R   +LL L
Sbjct: 300 EAGFERLFAALLAL 313


>sp|Q8NFT6|DBF4B_HUMAN Protein DBF4 homolog B OS=Homo sapiens GN=DBF4B PE=1 SV=1
          Length = 615

 Score = 32.0 bits (71), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 28/112 (25%)

Query: 1   MAKSHSRSPRLSISRSISRVRVHSPSLQRKKVSKNSVETD----QNVEFLGGG------- 49
           MA+S  R+P L +SR + + + +SP  ++   S  S   D    +N++FL G        
Sbjct: 17  MAESRLRAPDLGVSRCLGKCQKNSPGARKHPFSGKSFYLDLPAGKNLQFLTGAIQQLGGV 76

Query: 50  ----NAEEVEY-------VGNESSGSERYG------NKVMVVADSSLDAKGA 84
                ++EV Y       V  ESSG    G      ++V V   + +D KG+
Sbjct: 77  IEGFLSKEVSYIVSSRREVKAESSGKSHRGCPSPSPSEVRVETSAMVDPKGS 128


>sp|Q820Q8|RL18_NITEU 50S ribosomal protein L18 OS=Nitrosomonas europaea (strain ATCC
          19718 / NBRC 14298) GN=rplR PE=3 SV=1
          Length = 119

 Score = 31.6 bits (70), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 5  HSRSPRLSISRSISRV--RVHSPSLQRKKVSKNSVETDQNVEFLGGGNAEEVEYVGN 59
          +SR  RLS+ +S + +  ++  PS  R  VS ++VE +   ++  GG  E  +YVG+
Sbjct: 22 NSRQFRLSVHKSNNHIYAQILDPSSNRVIVSASTVEAEVKKQYPSGGTIEAAKYVGH 78


>sp|Q5XF57|Y5576_ARATH Probable receptor-like serine/threonine-protein kinase At5g57670
           OS=Arabidopsis thaliana GN=At5g57670 PE=2 SV=1
          Length = 579

 Score = 31.2 bits (69), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 75/167 (44%), Gaps = 22/167 (13%)

Query: 62  SGSERYGNKVMVVADSSLD-AKGALEWALSHTVQCQDTIVLLY-VIAKSSKQVKETKGKK 119
           S SE   NK++V      D ++  L WA++   +  DT+V L+ ++ +  +++   K K+
Sbjct: 3   SCSEEGSNKILVAISLDRDESQNVLSWAINVLAKPSDTVVALHLLVGEEPRKLPMKKKKR 62

Query: 120 LYLRAYEKLH------SMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLG 173
             +R + K H          TC   +  ++ ++  +    +G  +++E K  +   LVL 
Sbjct: 63  TQIR-HAKAHVISMLGEFAYTCCHNQVNLEAKVGFSSNIGRG--LIDEVKSISAHYLVLS 119

Query: 174 QR--RKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSSK 218
           +    +  +W  + R+         ++D+   + S + +  +RK  K
Sbjct: 120 RPTTHEFRIWNDIKRY---------VSDFAPSSCSVVLVGNQRKPHK 157


>sp|P17757|POL_HV2D1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
           A (isolate D194) GN=gag-pol PE=3 SV=3
          Length = 1462

 Score = 30.8 bits (68), Expect = 9.2,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 1/114 (0%)

Query: 46  LGGGNAEEVEYVGNESSGSERYGNKVMVVADSSLDAKGALEWALSHTVQCQDTI-VLLYV 104
           L G  A+E+E V    +G +RY  K +V A + LD  G  E  L     CQ  + VL  +
Sbjct: 8   LRGKKADELEKVRLRPNGKKRYRLKHVVWAANELDRFGLAESLLESKEGCQKILKVLEPL 67

Query: 105 IAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPII 158
           +   S+ +K        +        +K T + KK   +  +A T   EK P I
Sbjct: 68  VPTGSENLKSLFNTVCVIWCLHAEEKVKDTEEAKKLAQRHLVAETGTAEKMPNI 121


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.127    0.353 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,430,022
Number of Sequences: 539616
Number of extensions: 2881580
Number of successful extensions: 7235
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 7226
Number of HSP's gapped (non-prelim): 24
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)