Query 037436
Match_columns 236
No_of_seqs 146 out of 1811
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 21:03:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 99.9 3.2E-25 1.1E-29 172.2 16.5 137 65-213 2-146 (146)
2 1mjh_A Protein (ATP-binding do 99.9 6.9E-24 2.3E-28 167.8 18.4 137 67-215 4-160 (162)
3 2dum_A Hypothetical protein PH 99.9 9E-24 3.1E-28 168.6 17.0 140 66-217 3-159 (170)
4 3dlo_A Universal stress protei 99.9 4E-24 1.4E-28 169.3 14.1 133 64-213 20-155 (155)
5 3hgm_A Universal stress protei 99.9 2.9E-24 1E-28 166.8 12.3 134 67-212 1-147 (147)
6 3fg9_A Protein of universal st 99.9 2.2E-23 7.7E-28 164.0 16.4 136 65-213 12-156 (156)
7 3idf_A USP-like protein; unive 99.9 1.6E-23 5.3E-28 161.3 15.0 131 68-213 1-138 (138)
8 1tq8_A Hypothetical protein RV 99.9 2E-23 6.8E-28 166.6 13.7 140 64-216 13-160 (163)
9 2z08_A Universal stress protei 99.9 2.1E-23 7.3E-28 160.7 13.1 132 67-213 1-137 (137)
10 3tnj_A Universal stress protei 99.9 3E-23 1E-27 161.9 13.3 135 66-216 4-149 (150)
11 3fdx_A Putative filament prote 99.9 1.4E-22 4.9E-27 156.6 12.2 134 69-213 2-143 (143)
12 2gm3_A Unknown protein; AT3G01 99.9 3.6E-22 1.2E-26 160.1 14.4 140 66-217 3-166 (175)
13 3cis_A Uncharacterized protein 99.9 1.9E-21 6.4E-26 169.4 14.5 178 1-215 128-307 (309)
14 3mt0_A Uncharacterized protein 99.9 1.4E-21 4.9E-26 168.7 13.2 171 1-215 95-277 (290)
15 3olq_A Universal stress protei 99.9 9.8E-21 3.3E-25 164.9 15.1 149 66-226 5-163 (319)
16 1jmv_A USPA, universal stress 99.9 4E-21 1.4E-25 148.3 11.2 132 67-216 1-140 (141)
17 3loq_A Universal stress protei 99.8 6.7E-21 2.3E-25 164.6 13.5 148 65-226 19-177 (294)
18 3loq_A Universal stress protei 99.8 3.8E-21 1.3E-25 166.2 10.9 164 1-217 129-293 (294)
19 3cis_A Uncharacterized protein 99.8 3.7E-20 1.3E-24 161.2 16.3 149 65-226 16-178 (309)
20 3olq_A Universal stress protei 99.8 8.1E-21 2.8E-25 165.4 11.8 173 1-217 117-308 (319)
21 3ab8_A Putative uncharacterize 99.8 8.6E-20 2.9E-24 155.4 16.9 144 69-226 1-161 (268)
22 1q77_A Hypothetical protein AQ 99.8 2.5E-20 8.7E-25 143.4 12.1 127 66-213 2-138 (138)
23 3mt0_A Uncharacterized protein 99.8 8.8E-20 3E-24 157.4 11.9 135 66-226 5-141 (290)
24 3ab8_A Putative uncharacterize 99.8 7.2E-19 2.5E-23 149.6 11.3 152 1-213 115-268 (268)
25 3g40_A Na-K-CL cotransporter; 93.8 0.42 1.4E-05 40.9 9.8 120 67-220 154-283 (294)
26 2iel_A Hypothetical protein TT 93.4 1.2 4E-05 33.8 10.5 129 68-212 1-133 (138)
27 3a2k_A TRNA(Ile)-lysidine synt 93.3 0.35 1.2E-05 43.9 9.2 98 67-177 17-130 (464)
28 4b4k_A N5-carboxyaminoimidazol 92.9 0.93 3.2E-05 35.9 9.8 64 141-221 49-115 (181)
29 1wy5_A TILS, hypothetical UPF0 92.9 1.2 3.9E-05 38.3 11.5 97 67-177 23-136 (317)
30 4grd_A N5-CAIR mutase, phospho 92.6 1 3.4E-05 35.5 9.6 64 141-221 39-105 (173)
31 3trh_A Phosphoribosylaminoimid 91.6 1.5 5E-05 34.5 9.4 64 141-221 33-99 (169)
32 3kuu_A Phosphoribosylaminoimid 91.4 1.6 5.6E-05 34.3 9.5 64 141-221 39-105 (174)
33 3oow_A Phosphoribosylaminoimid 90.8 2.7 9.2E-05 32.9 10.2 64 141-221 32-98 (166)
34 1xmp_A PURE, phosphoribosylami 90.1 2.2 7.7E-05 33.4 9.2 64 141-221 38-104 (170)
35 3ors_A N5-carboxyaminoimidazol 90.0 2.6 9.1E-05 32.8 9.5 72 131-221 22-96 (163)
36 1u11_A PURE (N5-carboxyaminoim 89.6 2.8 9.4E-05 33.3 9.5 64 141-221 48-114 (182)
37 3rg8_A Phosphoribosylaminoimid 89.5 2.1 7.1E-05 33.3 8.5 70 131-219 21-94 (159)
38 1o4v_A Phosphoribosylaminoimid 88.8 3.4 0.00012 32.8 9.4 64 141-221 40-106 (183)
39 2ywx_A Phosphoribosylaminoimid 88.7 2.5 8.4E-05 32.8 8.4 65 131-214 18-82 (157)
40 3lp6_A Phosphoribosylaminoimid 88.3 2.6 8.7E-05 33.2 8.4 62 141-219 34-98 (174)
41 2xry_A Deoxyribodipyrimidine p 88.0 2.1 7.2E-05 38.9 9.0 116 76-214 46-161 (482)
42 3umv_A Deoxyribodipyrimidine p 86.4 1.5 5E-05 40.4 7.0 95 71-173 40-136 (506)
43 1ni5_A Putative cell cycle pro 83.6 4.3 0.00015 36.4 8.6 100 67-182 12-124 (433)
44 2wq7_A RE11660P; lyase-DNA com 82.7 3 0.0001 38.6 7.4 129 70-215 30-162 (543)
45 3g40_A Na-K-CL cotransporter; 79.7 28 0.00095 29.6 13.1 124 69-217 21-149 (294)
46 1efp_B ETF, protein (electron 79.4 6 0.0002 32.8 7.4 79 77-177 35-124 (252)
47 3ih5_A Electron transfer flavo 78.9 3.6 0.00012 33.3 5.8 87 68-176 3-101 (217)
48 1o97_C Electron transferring f 77.8 2.9 9.9E-05 35.0 5.0 83 74-177 32-123 (264)
49 1np7_A DNA photolyase; protein 77.2 6.4 0.00022 35.8 7.6 126 70-216 7-139 (489)
50 1owl_A Photolyase, deoxyribodi 77.2 4.8 0.00016 36.6 6.7 119 76-215 12-130 (484)
51 1efv_B Electron transfer flavo 76.9 5.7 0.00019 33.1 6.6 79 77-177 38-127 (255)
52 3tvs_A Cryptochrome-1; circadi 75.5 1.6 5.5E-05 40.5 3.1 96 76-175 13-108 (538)
53 1zun_A Sulfate adenylyltransfe 75.1 13 0.00044 32.0 8.5 94 68-177 46-157 (325)
54 1u3d_A Cryptochrome 1 apoprote 72.9 10 0.00034 34.7 7.7 118 76-215 21-139 (509)
55 2e0i_A 432AA long hypothetical 71.3 5.7 0.0002 35.7 5.6 117 76-215 10-127 (440)
56 1qv9_A F420-dependent methylen 71.0 9.9 0.00034 31.5 6.3 56 157-225 55-119 (283)
57 2j4d_A Cryptochrome 3, cryptoc 70.7 13 0.00043 34.2 7.9 126 69-215 40-175 (525)
58 3bl5_A Queuosine biosynthesis 69.4 38 0.0013 26.3 11.0 35 68-106 3-37 (219)
59 3fy4_A 6-4 photolyase; DNA rep 67.8 3.5 0.00012 38.2 3.4 90 76-175 14-112 (537)
60 1k92_A Argininosuccinate synth 66.7 14 0.00047 33.5 7.0 37 66-106 8-44 (455)
61 1dnp_A DNA photolyase; DNA rep 66.6 10 0.00035 34.3 6.2 91 79-176 13-105 (471)
62 2hma_A Probable tRNA (5-methyl 66.3 21 0.00072 31.2 8.1 98 67-176 8-133 (376)
63 2j07_A Deoxyribodipyrimidine p 65.0 9.5 0.00033 33.9 5.6 111 76-214 11-121 (420)
64 1sur_A PAPS reductase; assimil 64.4 41 0.0014 26.4 9.0 34 69-106 45-78 (215)
65 2pg3_A Queuosine biosynthesis 64.0 43 0.0015 26.6 9.1 35 68-106 2-36 (232)
66 1iv0_A Hypothetical protein; r 63.9 12 0.0004 26.4 4.9 54 155-215 40-94 (98)
67 2der_A TRNA-specific 2-thiouri 59.7 57 0.002 28.5 9.7 98 67-176 16-142 (380)
68 2h31_A Multifunctional protein 58.0 36 0.0012 30.5 8.0 58 141-215 292-353 (425)
69 3f6p_A Transcriptional regulat 56.6 35 0.0012 23.3 6.5 48 155-215 35-82 (120)
70 3t8y_A CHEB, chemotaxis respon 56.1 56 0.0019 23.8 8.9 48 155-215 60-107 (164)
71 3nbm_A PTS system, lactose-spe 55.9 19 0.00063 25.8 4.8 62 130-215 25-87 (108)
72 2c5s_A THII, probable thiamine 54.3 69 0.0023 28.2 9.3 36 67-106 186-221 (413)
73 2nz2_A Argininosuccinate synth 52.9 68 0.0023 28.4 9.0 35 68-106 5-39 (413)
74 4ds3_A Phosphoribosylglycinami 52.0 89 0.003 24.9 9.8 100 65-187 4-107 (209)
75 2oq2_A Phosphoadenosine phosph 51.9 96 0.0033 25.2 9.5 38 68-106 41-78 (261)
76 3kht_A Response regulator; PSI 50.7 51 0.0017 23.1 6.7 48 155-215 40-90 (144)
77 1nu0_A Hypothetical protein YQ 48.9 19 0.00064 27.0 4.0 55 155-215 42-97 (138)
78 1vhx_A Putative holliday junct 47.0 14 0.00047 28.1 3.1 56 155-216 44-100 (150)
79 1kor_A Argininosuccinate synth 47.0 1.2E+02 0.0042 26.6 9.7 35 69-106 1-35 (400)
80 2ywb_A GMP synthase [glutamine 45.7 1.4E+02 0.0046 27.0 10.1 35 68-106 209-243 (503)
81 1v6t_A Hypothetical UPF0271 pr 45.7 95 0.0033 25.7 8.1 138 67-226 27-179 (255)
82 1g63_A Epidermin modifying enz 45.4 21 0.00072 27.9 4.0 37 67-104 1-37 (181)
83 3kcq_A Phosphoribosylglycinami 44.5 1.2E+02 0.0041 24.2 10.1 96 68-187 8-103 (215)
84 4e7p_A Response regulator; DNA 44.2 82 0.0028 22.2 8.8 49 155-216 55-104 (150)
85 4f2d_A L-arabinose isomerase; 44.1 1.3E+02 0.0044 27.4 9.6 88 109-216 16-107 (500)
86 2zay_A Response regulator rece 43.6 79 0.0027 22.1 6.8 49 155-216 41-92 (147)
87 2a9o_A Response regulator; ess 42.6 73 0.0025 21.2 6.8 49 155-216 34-82 (120)
88 3p9x_A Phosphoribosylglycinami 42.3 1.3E+02 0.0044 24.0 9.9 98 68-188 2-103 (211)
89 3eul_A Possible nitrate/nitrit 42.1 89 0.003 22.0 7.9 49 155-216 50-99 (152)
90 2l2q_A PTS system, cellobiose- 42.0 86 0.0029 21.9 7.3 61 131-214 24-84 (109)
91 1zgz_A Torcad operon transcrip 41.6 77 0.0026 21.2 6.8 49 155-216 35-83 (122)
92 3hv2_A Response regulator/HD d 40.9 94 0.0032 22.0 7.2 49 155-216 47-96 (153)
93 1xw8_A UPF0271 protein YBGL; N 40.9 1.1E+02 0.0036 25.4 7.7 136 69-226 24-174 (252)
94 2o2z_A Hypothetical protein; s 40.8 70 0.0024 27.5 6.9 50 155-216 169-220 (323)
95 3rot_A ABC sugar transporter, 40.6 90 0.0031 25.1 7.5 75 126-217 20-97 (297)
96 3qi7_A Putative transcriptiona 40.3 94 0.0032 27.2 7.7 93 70-175 14-120 (371)
97 2p0y_A Hypothetical protein LP 39.9 48 0.0017 28.7 5.8 49 155-215 179-229 (341)
98 1w0d_A 3-isopropylmalate dehyd 39.6 86 0.003 27.0 7.3 78 78-173 153-231 (337)
99 1xhf_A DYE resistance, aerobic 39.1 86 0.0029 21.0 7.4 49 155-216 36-84 (123)
100 1jq5_A Glycerol dehydrogenase; 38.7 1E+02 0.0036 26.3 7.9 70 127-215 46-119 (370)
101 2rjn_A Response regulator rece 38.7 98 0.0033 21.9 6.7 48 155-215 40-88 (154)
102 2ppv_A Uncharacterized protein 38.3 53 0.0018 28.4 5.7 57 155-223 168-229 (332)
103 3cnb_A DNA-binding response re 37.4 99 0.0034 21.2 7.2 49 155-216 43-94 (143)
104 3iv3_A Tagatose 1,6-diphosphat 36.4 2E+02 0.007 24.6 11.2 115 84-215 111-254 (332)
105 2q5c_A NTRC family transcripti 36.2 88 0.003 24.4 6.4 21 195-215 59-79 (196)
106 8abp_A L-arabinose-binding pro 36.1 1.3E+02 0.0046 23.9 7.9 72 126-215 19-91 (306)
107 3l6u_A ABC-type sugar transpor 36.0 1.6E+02 0.0055 23.2 9.2 76 125-217 24-100 (293)
108 3rjz_A N-type ATP pyrophosphat 35.8 79 0.0027 25.8 6.2 92 69-175 5-99 (237)
109 2qzj_A Two-component response 35.6 86 0.0029 21.8 5.9 49 155-216 37-85 (136)
110 3gl9_A Response regulator; bet 35.5 1E+02 0.0035 20.9 6.2 49 155-216 35-86 (122)
111 3u1h_A 3-isopropylmalate dehyd 35.5 1.1E+02 0.0038 27.0 7.4 77 78-173 185-262 (390)
112 3s40_A Diacylglycerol kinase; 34.9 1.8E+02 0.0061 24.0 8.6 41 130-173 30-70 (304)
113 2ejb_A Probable aromatic acid 34.9 57 0.002 25.6 5.1 34 69-103 2-35 (189)
114 1k68_A Phytochrome response re 34.6 1.1E+02 0.0037 20.8 7.2 49 155-216 37-95 (140)
115 2gkg_A Response regulator homo 34.5 1E+02 0.0034 20.5 5.9 46 155-212 38-86 (127)
116 1vbk_A Hypothetical protein PH 34.5 1.7E+02 0.0057 24.6 8.3 87 67-175 178-264 (307)
117 2qv7_A Diacylglycerol kinase D 34.4 1.4E+02 0.0048 25.1 7.9 43 129-173 45-87 (337)
118 3r8w_A 3-isopropylmalate dehyd 33.9 1.2E+02 0.0042 26.8 7.5 77 78-173 206-283 (405)
119 1vlc_A 3-isopropylmalate dehyd 33.8 1.2E+02 0.0042 26.4 7.4 78 77-173 172-250 (366)
120 2dpl_A GMP synthetase, GMP syn 33.7 1.5E+02 0.005 24.9 7.8 35 69-106 21-55 (308)
121 3qjg_A Epidermin biosynthesis 33.6 52 0.0018 25.5 4.6 115 66-213 3-117 (175)
122 1s8n_A Putative antiterminator 33.5 1.1E+02 0.0039 22.9 6.6 47 155-214 47-93 (205)
123 2q7x_A UPF0052 protein SP_1565 33.2 63 0.0021 27.8 5.4 49 155-215 175-225 (326)
124 3o1i_D Periplasmic protein TOR 33.0 1.5E+02 0.0053 23.5 7.7 71 125-213 21-94 (304)
125 3hdg_A Uncharacterized protein 33.0 1.2E+02 0.004 20.8 6.4 49 155-216 40-89 (137)
126 1cnz_A IPMDH, IMDH, protein (3 33.0 1.3E+02 0.0044 26.2 7.4 78 77-173 168-246 (363)
127 2wsi_A FAD synthetase; transfe 33.0 97 0.0033 26.0 6.5 91 69-177 54-168 (306)
128 3b2n_A Uncharacterized protein 32.8 1.2E+02 0.0041 20.8 7.5 49 155-216 38-87 (133)
129 3udu_A 3-isopropylmalate dehyd 32.6 1.3E+02 0.0043 26.3 7.2 77 78-173 166-243 (361)
130 3n53_A Response regulator rece 32.3 1.2E+02 0.0042 20.8 7.4 48 155-215 35-85 (140)
131 2dfa_A Hypothetical UPF0271 pr 32.2 94 0.0032 25.7 6.0 138 67-226 27-179 (250)
132 3dff_A Teicoplanin pseudoaglyc 32.1 2.1E+02 0.0072 23.4 11.6 50 155-213 137-186 (273)
133 2y3z_A 3-isopropylmalate dehyd 31.7 1.4E+02 0.0048 26.0 7.4 77 78-173 162-239 (359)
134 3uug_A Multiple sugar-binding 31.6 2E+02 0.0068 23.2 8.3 75 126-217 20-95 (330)
135 3l49_A ABC sugar (ribose) tran 30.9 2E+02 0.0067 22.7 8.5 74 126-216 22-96 (291)
136 1a05_A IPMDH, IMDH, 3-isopropy 30.9 1.6E+02 0.0053 25.6 7.6 77 78-173 164-241 (358)
137 3vmk_A 3-isopropylmalate dehyd 30.7 1.5E+02 0.005 26.0 7.4 77 78-173 178-255 (375)
138 3cz5_A Two-component response 30.6 1.4E+02 0.0048 20.9 7.5 49 155-216 40-89 (153)
139 3ouz_A Biotin carboxylase; str 30.5 2.1E+02 0.0073 24.8 8.7 37 65-106 3-39 (446)
140 3h5i_A Response regulator/sens 30.3 1.4E+02 0.0046 20.7 9.5 50 155-216 38-88 (140)
141 3nhm_A Response regulator; pro 30.2 1.3E+02 0.0044 20.4 7.5 48 155-215 36-86 (133)
142 1srr_A SPO0F, sporulation resp 30.1 1.2E+02 0.0043 20.2 6.7 49 155-216 36-85 (124)
143 3da8_A Probable 5'-phosphoribo 30.1 2.1E+02 0.0071 22.8 8.4 97 67-188 11-111 (215)
144 1e2b_A Enzyme IIB-cellobiose; 29.9 57 0.0019 22.9 3.9 43 129-179 21-63 (106)
145 3cg0_A Response regulator rece 29.8 1.3E+02 0.0046 20.5 9.0 50 155-216 43-92 (140)
146 3gt7_A Sensor protein; structu 29.8 1.5E+02 0.0051 21.0 9.3 49 155-216 40-91 (154)
147 2x5e_A UPF0271 protein PA4511; 29.7 1.1E+02 0.0039 25.2 6.1 141 67-226 33-188 (252)
148 3jte_A Response regulator rece 29.7 1.4E+02 0.0047 20.6 6.9 49 155-216 36-87 (143)
149 2oqr_A Sensory transduction pr 29.6 1.3E+02 0.0046 22.9 6.5 48 155-215 37-84 (230)
150 1x0l_A Homoisocitrate dehydrog 29.5 1.2E+02 0.0042 26.0 6.6 78 78-173 143-222 (333)
151 3ayv_A Putative uncharacterize 29.3 1.8E+02 0.0062 22.7 7.4 81 81-166 74-154 (254)
152 3eod_A Protein HNR; response r 29.1 1.3E+02 0.0046 20.2 8.9 49 155-216 40-89 (130)
153 3m9w_A D-xylose-binding peripl 28.9 2.2E+02 0.0077 22.7 10.7 74 127-217 20-94 (313)
154 3flk_A Tartrate dehydrogenase/ 28.7 1.1E+02 0.0038 26.6 6.3 78 78-173 165-244 (364)
155 2bon_A Lipid kinase; DAG kinas 28.4 2E+02 0.0069 24.0 7.9 33 141-173 57-89 (332)
156 3fni_A Putative diflavin flavo 28.4 1.2E+02 0.0041 22.5 5.8 35 141-178 33-68 (159)
157 2yxb_A Coenzyme B12-dependent 28.4 95 0.0033 23.4 5.2 27 152-179 56-82 (161)
158 3kyj_B CHEY6 protein, putative 28.4 1.5E+02 0.0051 20.5 8.0 47 155-214 48-95 (145)
159 3q9s_A DNA-binding response re 28.2 2.2E+02 0.0074 22.4 8.5 49 155-216 70-118 (249)
160 3qk7_A Transcriptional regulat 28.1 2.3E+02 0.0078 22.6 11.8 72 125-215 26-97 (294)
161 3i42_A Response regulator rece 27.9 1.4E+02 0.0048 20.0 9.5 50 155-217 36-88 (127)
162 2qsj_A DNA-binding response re 27.4 1.6E+02 0.0055 20.6 6.5 48 155-215 38-87 (154)
163 1ccw_A Protein (glutamate muta 26.7 1.8E+02 0.0062 21.0 7.9 60 141-213 31-92 (137)
164 3hzh_A Chemotaxis response reg 26.6 1.7E+02 0.0059 20.7 9.1 48 155-215 70-120 (157)
165 3cg4_A Response regulator rece 26.4 1.6E+02 0.0054 20.2 8.6 49 155-216 40-91 (142)
166 1qkk_A DCTD, C4-dicarboxylate 26.4 1.1E+02 0.0037 21.7 5.1 48 155-215 36-84 (155)
167 3hly_A Flavodoxin-like domain; 26.2 1.8E+02 0.0062 21.4 6.5 35 141-178 29-63 (161)
168 3qw4_B UMP synthase; N-termina 25.9 2.7E+02 0.0092 24.8 8.5 97 67-175 13-114 (453)
169 3rqi_A Response regulator prot 25.9 1.4E+02 0.0047 22.1 5.8 49 155-216 40-89 (184)
170 3k32_A Uncharacterized protein 25.9 87 0.003 24.4 4.7 37 66-106 4-40 (203)
171 3exr_A RMPD (hexulose-6-phosph 25.6 2.5E+02 0.0085 22.2 7.7 83 68-173 5-89 (221)
172 1zh2_A KDP operon transcriptio 25.4 1.4E+02 0.0049 19.6 5.4 48 156-216 35-82 (121)
173 2qxy_A Response regulator; reg 25.4 1.7E+02 0.0057 20.1 9.3 48 155-216 37-85 (142)
174 3auf_A Glycinamide ribonucleot 25.3 2.6E+02 0.0089 22.3 10.6 32 156-187 91-122 (229)
175 3o1l_A Formyltetrahydrofolate 25.2 3E+02 0.01 23.1 11.0 96 67-187 104-202 (302)
176 3tqi_A GMP synthase [glutamine 25.2 1E+02 0.0035 28.1 5.6 35 69-106 231-265 (527)
177 2gwr_A DNA-binding response re 25.1 1.5E+02 0.005 23.0 6.0 49 155-216 38-86 (238)
178 2kll_A Interleukin-33; beta-tr 24.8 25 0.00087 26.2 1.2 16 221-236 72-87 (161)
179 2ohh_A Type A flavoprotein FPR 24.7 2.6E+02 0.009 23.5 8.1 89 70-177 227-318 (404)
180 3h75_A Periplasmic sugar-bindi 24.5 2.8E+02 0.0096 22.6 8.1 74 126-217 21-97 (350)
181 1k66_A Phytochrome response re 24.5 1.4E+02 0.0047 20.5 5.3 22 155-176 41-72 (149)
182 3n0r_A Response regulator; sig 24.3 1.7E+02 0.0057 24.0 6.4 49 155-215 194-242 (286)
183 3f6c_A Positive transcription 24.2 1.7E+02 0.0058 19.8 8.9 48 156-216 36-84 (134)
184 3blx_B Isocitrate dehydrogenas 23.7 1.9E+02 0.0065 25.1 6.8 79 77-173 161-243 (354)
185 3blx_A Isocitrate dehydrogenas 23.6 1.6E+02 0.0056 25.4 6.3 79 78-173 156-236 (349)
186 1q6o_A Humps, 3-keto-L-gulonat 23.3 2.6E+02 0.0089 21.6 7.7 85 69-174 4-88 (216)
187 2o8v_A Phosphoadenosine phosph 23.2 2.9E+02 0.0099 22.1 8.4 34 69-106 46-79 (252)
188 4dad_A Putative pilus assembly 23.1 1.9E+02 0.0065 19.9 8.1 49 155-216 55-105 (146)
189 1a2o_A CHEB methylesterase; ba 23.1 2E+02 0.0068 24.4 6.8 49 155-216 38-86 (349)
190 1sbz_A Probable aromatic acid 22.8 1.2E+02 0.004 24.0 4.9 35 69-103 1-35 (197)
191 3a10_A Response regulator; pho 22.7 1.7E+02 0.0057 19.2 7.2 48 155-215 34-82 (116)
192 1ys7_A Transcriptional regulat 22.5 2.5E+02 0.0087 21.2 7.1 48 155-215 40-88 (233)
193 3t6k_A Response regulator rece 22.4 1.9E+02 0.0066 19.8 7.2 49 155-216 37-88 (136)
194 3d0c_A Dihydrodipicolinate syn 22.4 3.4E+02 0.012 22.6 9.0 75 124-213 67-144 (314)
195 1kgs_A DRRD, DNA binding respo 22.2 2.5E+02 0.0086 21.1 7.1 48 155-215 35-83 (225)
196 3k4h_A Putative transcriptiona 22.1 2.9E+02 0.0098 21.7 7.4 74 125-217 29-103 (292)
197 1mb3_A Cell division response 21.9 1.8E+02 0.0061 19.2 6.6 48 155-215 34-84 (124)
198 2rdm_A Response regulator rece 21.7 1.9E+02 0.0064 19.4 6.8 50 155-216 38-89 (132)
199 3zqu_A Probable aromatic acid 21.6 1.2E+02 0.0041 24.1 4.8 36 68-104 4-39 (209)
200 1y80_A Predicted cobalamin bin 21.5 1.4E+02 0.0046 23.2 5.1 34 141-176 116-149 (210)
201 3ks9_A Mglur1, metabotropic gl 21.4 3.5E+02 0.012 23.8 8.5 40 67-106 196-235 (496)
202 2pju_A Propionate catabolism o 21.3 2.8E+02 0.0094 22.2 7.0 65 125-213 22-89 (225)
203 1mvo_A PHOP response regulator 21.2 2E+02 0.0067 19.4 6.6 48 155-215 36-84 (136)
204 2i2x_B MTAC, methyltransferase 21.2 3.2E+02 0.011 21.9 7.8 35 141-177 151-185 (258)
205 2qvg_A Two component response 21.1 2E+02 0.007 19.6 6.1 22 155-176 42-69 (143)
206 2pl1_A Transcriptional regulat 21.1 1.8E+02 0.0063 19.0 7.2 49 155-216 33-82 (121)
207 3ksm_A ABC-type sugar transpor 21.1 2.7E+02 0.0094 21.5 7.0 75 126-217 17-95 (276)
208 3crn_A Response regulator rece 21.0 2E+02 0.0069 19.5 7.3 49 155-216 36-85 (132)
209 3lua_A Response regulator rece 20.8 1.4E+02 0.0049 20.4 4.7 50 155-216 38-91 (140)
210 2a5l_A Trp repressor binding p 20.7 1.1E+02 0.0038 23.1 4.3 41 66-106 3-44 (200)
211 3g1w_A Sugar ABC transporter; 20.7 3.2E+02 0.011 21.6 9.5 75 126-217 21-97 (305)
212 3u7r_A NADPH-dependent FMN red 20.6 66 0.0023 25.1 3.0 41 67-108 1-44 (190)
213 3n0v_A Formyltetrahydrofolate 20.6 3.6E+02 0.012 22.3 10.9 96 67-187 89-187 (286)
214 3ty4_A Probable homoisocitrate 20.4 1.4E+02 0.0047 26.1 5.2 79 78-173 161-255 (366)
215 3cfy_A Putative LUXO repressor 20.3 2.2E+02 0.0074 19.5 7.2 49 155-216 37-86 (137)
216 2d1c_A Isocitrate dehydrogenas 20.3 1.9E+02 0.0067 26.3 6.3 78 78-173 164-243 (496)
217 1dd9_A DNA primase, DNAG; topr 20.1 3.7E+02 0.013 22.9 7.9 35 68-102 206-243 (338)
218 3kip_A 3-dehydroquinase, type 20.1 3E+02 0.01 21.2 7.6 59 142-215 57-118 (167)
219 3jv9_A OXYR, transcriptional r 20.0 2.6E+02 0.0088 20.3 7.1 42 131-176 22-63 (219)
220 1meo_A Phosophoribosylglycinam 20.0 3.2E+02 0.011 21.4 9.6 96 69-187 1-100 (209)
221 2l69_A Rossmann 2X3 fold prote 20.0 79 0.0027 22.2 2.9 43 130-175 17-59 (134)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.93 E-value=3.2e-25 Score=172.23 Aligned_cols=137 Identities=19% Similarity=0.246 Sum_probs=119.2
Q ss_pred CCCCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCc------hhHHHHHHHHHHHHHHHHHHHHhhhh
Q 037436 65 ERYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQV------KETKGKKLYLRAYEKLHSMKSTCQLK 138 (236)
Q Consensus 65 ~~~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (236)
.+|+++||||+|+++.+..+++||+.+|...+++|+++||++.+.... .....+...+..++.++++.+.+..
T Consensus 2 ~~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 80 (146)
T 3s3t_A 2 NARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVAT- 80 (146)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 479999999999999999999999999999999999999998544331 1233455566777788888887764
Q ss_pred CCCc-eEEEEEEecCChHHHHHH-HHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEe
Q 037436 139 KPGV-QVEIAITEGKEKGPIIVE-EAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVR 213 (236)
Q Consensus 139 ~~~v-~v~~~v~~G~~~~~~I~~-~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~ 213 (236)
.++ ++++.+..|++ .+.|++ +|++.++||||||+++++.+.++ ++||++++++++++||||+||
T Consensus 81 -~g~~~~~~~~~~g~~-~~~I~~~~a~~~~~dliV~G~~~~~~~~~~---------~~Gs~~~~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 81 -TSAPNLKTEISYGIP-KHTIEDYAKQHPEIDLIVLGATGTNSPHRV---------AVGSTTSYVVDHAPCNVIVIR 146 (146)
T ss_dssp -SSCCCCEEEEEEECH-HHHHHHHHHHSTTCCEEEEESCCSSCTTTC---------SSCHHHHHHHHHCSSEEEEEC
T ss_pred -cCCcceEEEEecCCh-HHHHHHHHHhhcCCCEEEECCCCCCCcceE---------EEcchHHHHhccCCCCEEEeC
Confidence 388 89999999998 899999 99999999999999999999888 999999999999999999996
No 2
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.92 E-value=6.9e-24 Score=167.80 Aligned_cols=137 Identities=23% Similarity=0.308 Sum_probs=115.9
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecC-----C--CCc-------hh------HHHHHHHHHHHH
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKS-----S--KQV-------KE------TKGKKLYLRAYE 126 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~-----~--~~~-------~~------~~~~~~~~~~~~ 126 (236)
|+++||||+|+++.+..|++||+.+|...+++|++|||++.. . ... .. ...++..+.+++
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999843 1 110 10 123344556677
Q ss_pred HHHHHHHHhhhhCCCceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCC
Q 037436 127 KLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSS 206 (236)
Q Consensus 127 ~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~ 206 (236)
.++++.+.+.. .++++++.+..|++ .++|+++|++.++||||||+++++.+.++ ++||++++|+++++
T Consensus 84 ~l~~~~~~~~~--~g~~~~~~v~~G~~-~~~I~~~a~~~~~dlIV~G~~g~~~~~~~---------~~GSv~~~vl~~~~ 151 (162)
T 1mjh_A 84 KMENIKKELED--VGFKVKDIIVVGIP-HEEIVKIAEDEGVDIIIMGSHGKTNLKEI---------LLGSVTENVIKKSN 151 (162)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEEEECH-HHHHHHHHHHTTCSEEEEESCCSSCCTTC---------SSCHHHHHHHHHCC
T ss_pred HHHHHHHHHHH--cCCceEEEEcCCCH-HHHHHHHHHHcCCCEEEEcCCCCCCccce---------EecchHHHHHHhCC
Confidence 78888777764 48999999999988 89999999999999999999999999888 99999999999999
Q ss_pred CeEEEEeCC
Q 037436 207 RMTIAVRRK 215 (236)
Q Consensus 207 ~PVlvV~~~ 215 (236)
|||+|||+.
T Consensus 152 ~pVlvv~~~ 160 (162)
T 1mjh_A 152 KPVLVVKRK 160 (162)
T ss_dssp SCEEEECCC
T ss_pred CCEEEEeCC
Confidence 999999865
No 3
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.92 E-value=9e-24 Score=168.56 Aligned_cols=140 Identities=21% Similarity=0.154 Sum_probs=115.9
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCC-c--------------hhHHHHHHHHHHHHHHHH
Q 037436 66 RYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQ-V--------------KETKGKKLYLRAYEKLHS 130 (236)
Q Consensus 66 ~~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~-~--------------~~~~~~~~~~~~~~~l~~ 130 (236)
.|+++||||+|+++.+..+++||+.+|...+++|++|||++.+... . .....+...+.+++.+++
T Consensus 3 ~m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (170)
T 2dum_A 3 FMFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQE 82 (170)
T ss_dssp -CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHH
T ss_pred cccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999743211 0 012234455667778888
Q ss_pred HHHHhhhhCCCceEEE--EEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCe
Q 037436 131 MKSTCQLKKPGVQVEI--AITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRM 208 (236)
Q Consensus 131 ~~~~~~~~~~~v~v~~--~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~P 208 (236)
+.+.+... ++++++ .+..|++ .+.|+++|++.++||||||+++++.+.++ ++||++++|+++++||
T Consensus 83 ~~~~~~~~--g~~~~~~~~~~~g~~-~~~I~~~a~~~~~DlIV~G~~g~~~~~~~---------~~Gsv~~~vl~~~~~P 150 (170)
T 2dum_A 83 KAEEVKRA--FRAKNVRTIIRFGIP-WDEIVKVAEEENVSLIILPSRGKLSLSHE---------FLGSTVMRVLRKTKKP 150 (170)
T ss_dssp HHHHHHHH--TTCSEEEEEEEEECH-HHHHHHHHHHTTCSEEEEESCCCCC--TT---------CCCHHHHHHHHHCSSC
T ss_pred HHHHHHHc--CCceeeeeEEecCCh-HHHHHHHHHHcCCCEEEECCCCCCccccc---------eechHHHHHHHhCCCC
Confidence 88777654 777777 8888988 89999999999999999999999999888 9999999999999999
Q ss_pred EEEEeCCCC
Q 037436 209 TIAVRRKSS 217 (236)
Q Consensus 209 VlvV~~~~~ 217 (236)
|||||....
T Consensus 151 Vlvv~~~~~ 159 (170)
T 2dum_A 151 VLIIKEVDE 159 (170)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCc
Confidence 999997755
No 4
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.91 E-value=4e-24 Score=169.27 Aligned_cols=133 Identities=18% Similarity=0.179 Sum_probs=112.4
Q ss_pred CCCCCCEEEEEecC-CHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCc
Q 037436 64 SERYGNKVMVVADS-SLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGV 142 (236)
Q Consensus 64 ~~~~~~~ILV~vD~-s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 142 (236)
..+|+++||||+|+ ++.+..+++||+.+|...+++|++|||++.+... .+...+..++.++++.+.+... ++
T Consensus 20 ~~mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~--g~ 92 (155)
T 3dlo_A 20 QGMIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT-----KDEDIIEAKETLSWAVSIIRKE--GA 92 (155)
T ss_dssp --CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS-----CHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred cccccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc-----cHHHHHHHHHHHHHHHHHHHhc--CC
Confidence 36899999999999 9999999999999999999999999999843221 2344556777888888877755 55
Q ss_pred eEEE--EEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEe
Q 037436 143 QVEI--AITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVR 213 (236)
Q Consensus 143 ~v~~--~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~ 213 (236)
.+++ .+..|++ .++|+++|++.++||||||+++++.+.++ ++||++++++++++||||+||
T Consensus 93 ~~~~~~~v~~G~~-~~~I~~~a~~~~~DLIV~G~~g~~~~~~~---------~lGSv~~~vl~~a~~PVLvVr 155 (155)
T 3dlo_A 93 EGEEHLLVRGKEP-PDDIVDFADEVDAIAIVIGIRKRSPTGKL---------IFGSVARDVILKANKPVICIK 155 (155)
T ss_dssp CEEEEEEESSSCH-HHHHHHHHHHTTCSEEEEECCEECTTSCE---------ECCHHHHHHHHHCSSCEEEEC
T ss_pred CceEEEEecCCCH-HHHHHHHHHHcCCCEEEECCCCCCCCCCE---------EeccHHHHHHHhCCCCEEEeC
Confidence 5554 4556888 89999999999999999999999999888 999999999999999999996
No 5
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.91 E-value=2.9e-24 Score=166.75 Aligned_cols=134 Identities=22% Similarity=0.204 Sum_probs=114.7
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCC----------chhHHHHHHHHHHHHHHHHHHHHhh
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQ----------VKETKGKKLYLRAYEKLHSMKSTCQ 136 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~ 136 (236)
|+++||||+|+|+.+..+++||+.+|...+++|+++||++.+... ......+...+..++.++++.+.+.
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRAT 80 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999843201 0011234556677888888888877
Q ss_pred hhCCCceE---EEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEE
Q 037436 137 LKKPGVQV---EIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAV 212 (236)
Q Consensus 137 ~~~~~v~v---~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV 212 (236)
.. ++++ ++.+..|++ .+.|+++|++.++||||||+++++.+.++ ++||++++++++++||||+|
T Consensus 81 ~~--g~~~~~~~~~~~~g~~-~~~I~~~a~~~~~dliV~G~~~~~~~~~~---------~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 81 EL--GVPADKVRAFVKGGRP-SRTIVRFARKRECDLVVIGAQGTNGDKSL---------LLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HT--TCCGGGEEEEEEESCH-HHHHHHHHHHTTCSEEEECSSCTTCCSCC---------CCCHHHHHHHHHCSSCEEEC
T ss_pred hc--CCCccceEEEEecCCH-HHHHHHHHHHhCCCEEEEeCCCCccccce---------eeccHHHHHHhhCCCCEEEC
Confidence 54 6666 899999988 89999999999999999999999999888 99999999999999999986
No 6
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.91 E-value=2.2e-23 Score=164.01 Aligned_cols=136 Identities=17% Similarity=0.186 Sum_probs=116.5
Q ss_pred CCCCCEEEEEec--CCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCC----chhHHHHHHHHHHHHHHHHHHHHhhhh
Q 037436 65 ERYGNKVMVVAD--SSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQ----VKETKGKKLYLRAYEKLHSMKSTCQLK 138 (236)
Q Consensus 65 ~~~~~~ILV~vD--~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (236)
.+++++||||+| +++.+..+++||+.+|...+++|++|||++.+... ......+...+.+++.++++.+.+...
T Consensus 12 ~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 91 (156)
T 3fg9_A 12 PLVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQR 91 (156)
T ss_dssp CCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 478999999999 99999999999999999999999999999844321 123444556677788888888877754
Q ss_pred CCCc-eEEEEEEe-cCChHHHHHHH-HHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEe
Q 037436 139 KPGV-QVEIAITE-GKEKGPIIVEE-AKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVR 213 (236)
Q Consensus 139 ~~~v-~v~~~v~~-G~~~~~~I~~~-a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~ 213 (236)
++ .+++.+.. |++ .++|+++ |++.++||||||+++++.+. . ++||++++++++++||||+||
T Consensus 92 --g~~~~~~~v~~~g~~-~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~---------~~Gs~~~~vl~~a~~PVlvV~ 156 (156)
T 3fg9_A 92 --GVNQVEPLVYEGGDV-DDVILEQVIPEFKPDLLVTGADTEFPHS-K---------IAGAIGPRLARKAPISVIVVR 156 (156)
T ss_dssp --TCSSEEEEEEECSCH-HHHHHHTHHHHHCCSEEEEETTCCCTTS-S---------SCSCHHHHHHHHCSSEEEEEC
T ss_pred --CCCceEEEEEeCCCH-HHHHHHHHHHhcCCCEEEECCCCCCccc-e---------eecchHHHHHHhCCCCEEEeC
Confidence 78 58999999 988 8999999 99999999999999998885 5 799999999999999999996
No 7
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.91 E-value=1.6e-23 Score=161.32 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=113.2
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHhh-ccCCCEEEEEEEEecCCCCc-----hhHHHHHHH-HHHHHHHHHHHHHhhhhCC
Q 037436 68 GNKVMVVADSSLDAKGALEWALSHT-VQCQDTIVLLYVIAKSSKQV-----KETKGKKLY-LRAYEKLHSMKSTCQLKKP 140 (236)
Q Consensus 68 ~~~ILV~vD~s~~s~~al~~A~~la-~~~~~~l~llhV~~~~~~~~-----~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 140 (236)
|++||||+|+++.+..+++||+.+| ...+++|+++||++.+.... .....++.. +..++.++++.+.+.. .
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 78 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTE--K 78 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH--C
Confidence 5799999999999999999999999 99999999999998544331 122334444 6677888888887774 5
Q ss_pred CceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEe
Q 037436 141 GVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVR 213 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~ 213 (236)
++++++.+..|++ .++|+++++ ++||||||+++++.+.++ + ||++++++++++||||+||
T Consensus 79 g~~~~~~v~~g~~-~~~I~~~a~--~~dliV~G~~~~~~~~~~---------~-Gs~~~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 79 GINPFVVIKEGEP-VEMVLEEAK--DYNLLIIGSSENSFLNKI---------F-ASHQDDFIQKAPIPVLIVK 138 (138)
T ss_dssp TCCCEEEEEESCH-HHHHHHHHT--TCSEEEEECCTTSTTSSC---------C-CCTTCHHHHHCSSCEEEEC
T ss_pred CCCeEEEEecCCh-HHHHHHHHh--cCCEEEEeCCCcchHHHH---------h-CcHHHHHHhcCCCCEEEeC
Confidence 8999999999998 899999998 999999999999999888 8 9999999999999999996
No 8
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.90 E-value=2e-23 Score=166.61 Aligned_cols=140 Identities=19% Similarity=0.184 Sum_probs=112.2
Q ss_pred CCCCCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEE--EEEecCCC-Cc----hhHHHHHHHHHHHHHHHHHHHHhh
Q 037436 64 SERYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLL--YVIAKSSK-QV----KETKGKKLYLRAYEKLHSMKSTCQ 136 (236)
Q Consensus 64 ~~~~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~ll--hV~~~~~~-~~----~~~~~~~~~~~~~~~l~~~~~~~~ 136 (236)
...++++||||+|+|+.+..|++||+.+|. .+++|++| ||++.+.. .. .....+...+..++.++++.+.+.
T Consensus 13 ~~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 91 (163)
T 1tq8_A 13 SLSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAH 91 (163)
T ss_dssp CCCCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999 99999999 88763321 10 111122233456677777777776
Q ss_pred hhCCCce-EEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 137 LKKPGVQ-VEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 137 ~~~~~v~-v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
. .+++ +++.+..|++ .++|+++|++.++||||||+++++.+.++ ++||++++|+++++|||||||..
T Consensus 92 ~--~gv~~v~~~v~~G~~-~~~I~~~a~~~~~DLIV~G~~g~~~~~~~---------~lGSva~~vl~~a~~PVlvV~~~ 159 (163)
T 1tq8_A 92 N--AGAKNVEERPIVGAP-VDALVNLADEEKADLLVVGNVGLSTIAGR---------LLGSVPANVSRRAKVDVLIVHTT 159 (163)
T ss_dssp T--TTCCEEEEEEECSSH-HHHHHHHHHHTTCSEEEEECCCCCSHHHH---------HTBBHHHHHHHHTTCEEEEECCC
T ss_pred H--cCCCeEEEEEecCCH-HHHHHHHHHhcCCCEEEECCCCCCcccce---------eeccHHHHHHHhCCCCEEEEeCC
Confidence 3 4887 9999999988 89999999999999999999999999998 99999999999999999999865
Q ss_pred C
Q 037436 216 S 216 (236)
Q Consensus 216 ~ 216 (236)
.
T Consensus 160 ~ 160 (163)
T 1tq8_A 160 E 160 (163)
T ss_dssp -
T ss_pred C
Confidence 3
No 9
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.90 E-value=2.1e-23 Score=160.72 Aligned_cols=132 Identities=18% Similarity=0.226 Sum_probs=105.6
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCC-Cc---hhHHHHHHHHHHHHHHHHHHHHhhhhCCCc
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSK-QV---KETKGKKLYLRAYEKLHSMKSTCQLKKPGV 142 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~-~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 142 (236)
|+++||||+|+++.+..+++||+.+|...+++|+++||++.... .. .+...+...+..++.++++.+. .++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~ 75 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARAL-----TGV 75 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHH-----HCC
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHH-----cCC
Confidence 68999999999999999999999999999999999999972211 10 0111122334455555555443 267
Q ss_pred -eEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEe
Q 037436 143 -QVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVR 213 (236)
Q Consensus 143 -~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~ 213 (236)
++++.+..|++ .++|++++++.++||||||+++++.+.++ ++||++++++++++|||++||
T Consensus 76 ~~~~~~~~~g~~-~~~I~~~a~~~~~dliV~G~~~~~~~~~~---------~~Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 76 PKEDALLLEGVP-AEAILQAARAEKADLIVMGTRGLGALGSL---------FLGSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp CGGGEEEEESSH-HHHHHHHHHHTTCSEEEEESSCTTCCSCS---------SSCHHHHHHHHHCSSCEEEEC
T ss_pred CccEEEEEecCH-HHHHHHHHHHcCCCEEEECCCCCchhhhh---------hhccHHHHHHhcCCCCEEEeC
Confidence 77777888988 89999999999999999999999988888 899999999999999999996
No 10
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.90 E-value=3e-23 Score=161.94 Aligned_cols=135 Identities=19% Similarity=0.216 Sum_probs=102.3
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCC----C------chhHHHHHHHHHHHHHHHHHHHHh
Q 037436 66 RYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSK----Q------VKETKGKKLYLRAYEKLHSMKSTC 135 (236)
Q Consensus 66 ~~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~----~------~~~~~~~~~~~~~~~~l~~~~~~~ 135 (236)
+++++||||+|+++.+..+++||+.+|...+++|++|||++.+.. . ......++..+.+++.++++.+.+
T Consensus 4 ~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (150)
T 3tnj_A 4 SVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTL 83 (150)
T ss_dssp CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 689999999999999999999999999999999999999874321 0 011233445555666666655433
Q ss_pred hhhCCCce-EEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeC
Q 037436 136 QLKKPGVQ-VEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRR 214 (236)
Q Consensus 136 ~~~~~~v~-v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~ 214 (236)
++. +++.+..|++ .++|++++++.++||||||+++++.+. + ++||++++++++++||||+||.
T Consensus 84 -----~~~~~~~~~~~g~~-~~~I~~~a~~~~~dliV~G~~~~~~~~-~---------~~Gs~~~~vl~~~~~pVlvv~~ 147 (150)
T 3tnj_A 84 -----GIDPAHRWLVWGEP-REEIIRIAEQENVDLIVVGSHGRHGLA-L---------LLGSTANSVLHYAKCDVLAVRL 147 (150)
T ss_dssp -----TCCGGGEEEEESCH-HHHHHHHHHHTTCSEEEEEEC------------------CCCHHHHHHHHCSSEEEEEEC
T ss_pred -----CCCcceEEEecCCH-HHHHHHHHHHcCCCEEEEecCCCCCcC-e---------EecchHHHHHHhCCCCEEEEeC
Confidence 344 4667788988 899999999999999999999999888 8 9999999999999999999997
Q ss_pred CC
Q 037436 215 KS 216 (236)
Q Consensus 215 ~~ 216 (236)
+.
T Consensus 148 ~~ 149 (150)
T 3tnj_A 148 RD 149 (150)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 11
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.88 E-value=1.4e-22 Score=156.62 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=105.9
Q ss_pred CEEEEEecCCHh--HHHHHHHHHHhhccCCCEEEEEEEEecCCCCch-----hHHHHHHHHHHHHHHHHHHHHhhhh-CC
Q 037436 69 NKVMVVADSSLD--AKGALEWALSHTVQCQDTIVLLYVIAKSSKQVK-----ETKGKKLYLRAYEKLHSMKSTCQLK-KP 140 (236)
Q Consensus 69 ~~ILV~vD~s~~--s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~-~~ 140 (236)
++||||+|+|+. +..+++||+.+|...+++|+++||++.+..... ....+..++..++.++.+.+.++.. .+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 789999999999 999999999999999999999999984332210 0011223334455556666665542 24
Q ss_pred CceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEe
Q 037436 141 GVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVR 213 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~ 213 (236)
++.+++.+..|++ .+.|++++++.++||||||+++ +.+.++ ++||++++++++++||||+||
T Consensus 82 ~~~v~~~~~~g~~-~~~I~~~a~~~~~dliV~G~~~-~~~~~~---------~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 82 EDRMHFHVAEGSP-KDKILALAKSLPADLVIIASHR-PDITTY---------LLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp GGGEEEEEEESCH-HHHHHHHHHHTTCSEEEEESSC-TTCCSC---------SSCHHHHHHHHHCSSEEEEEC
T ss_pred CCceEEEEEecCh-HHHHHHHHHHhCCCEEEEeCCC-CCCeee---------eeccHHHHHHHhCCCCEEEeC
Confidence 5778999999988 8999999999999999999995 778888 899999999999999999996
No 12
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.88 E-value=3.6e-22 Score=160.07 Aligned_cols=140 Identities=25% Similarity=0.377 Sum_probs=103.5
Q ss_pred CCCCEEEEEecCCH---------hHHHHHHHHHHhhcc---CCCEEEEEEEEecCCC-Cc--------hhHH---HHHHH
Q 037436 66 RYGNKVMVVADSSL---------DAKGALEWALSHTVQ---CQDTIVLLYVIAKSSK-QV--------KETK---GKKLY 121 (236)
Q Consensus 66 ~~~~~ILV~vD~s~---------~s~~al~~A~~la~~---~~~~l~llhV~~~~~~-~~--------~~~~---~~~~~ 121 (236)
..+++|||++|+++ .+..+++||+.++.+ .+++|++|||++.+.. .. .... .++..
T Consensus 3 ~~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (175)
T 2gm3_A 3 SEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNK 82 (175)
T ss_dssp --CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHH
T ss_pred CCccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHH
Confidence 46899999999999 999999999998744 5889999999863221 10 1111 11223
Q ss_pred HHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHH
Q 037436 122 LRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYC 201 (236)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~l 201 (236)
+..++.++++.+.+... ++++++.+..|++ .+.|+++|++.++||||||+++++.+.++ ++||++++|
T Consensus 83 ~~~~~~l~~~~~~~~~~--g~~~~~~v~~G~~-~~~I~~~a~~~~~DLIVmG~~g~~~~~~~---------~~Gsva~~v 150 (175)
T 2gm3_A 83 AKGLHLLEFFVNKCHEI--GVGCEAWIKTGDP-KDVICQEVKRVRPDFLVVGSRGLGRFQKV---------FVGTVSAFC 150 (175)
T ss_dssp HHHHHHHHHHHHHHHHH--TCEEEEEEEESCH-HHHHHHHHHHHCCSEEEEEECCCC-----------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHC--CCceEEEEecCCH-HHHHHHHHHHhCCCEEEEeCCCCChhhhh---------hcCchHHHH
Confidence 34566777777766644 8899999999988 89999999999999999999999999888 999999999
Q ss_pred HHhCCCeEEEEeCCCC
Q 037436 202 IQNSSRMTIAVRRKSS 217 (236)
Q Consensus 202 l~~s~~PVlvV~~~~~ 217 (236)
+++++|||||||....
T Consensus 151 l~~a~~pVlvv~~~~~ 166 (175)
T 2gm3_A 151 VKHAECPVMTIKRNAD 166 (175)
T ss_dssp HHHCSSCEEEEECCGG
T ss_pred HhCCCCCEEEEcCCcC
Confidence 9999999999997654
No 13
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.87 E-value=1.9e-21 Score=169.43 Aligned_cols=178 Identities=15% Similarity=0.089 Sum_probs=136.6
Q ss_pred CCCCC-CCCCccccccccccccccCCCcccccccCCCcccccccccCCCCChhhhhhccCCCCCCCCCCCEEEEEecCCH
Q 037436 1 MAKSH-SRSPRLSISRSISRVRVHSPSLQRKKVSKNSVETDQNVEFLGGGNAEEVEYVGNESSGSERYGNKVMVVADSSL 79 (236)
Q Consensus 1 ~~~~~-~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILV~vD~s~ 79 (236)
||..| ..+.++++|+...++...+|.++.-.+.. ... .....+++|||++|+++
T Consensus 128 ~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~------------~~~-------------~~~~~~~~Ilv~~D~s~ 182 (309)
T 3cis_A 128 VGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDE------------DSV-------------MPHPQQAPVLVGVDGSS 182 (309)
T ss_dssp EESSCTTCCTTCCSCHHHHHHHHHCSSCEEEECTT------------CCC-------------SCSSCCCCEEEECCSSH
T ss_pred ECCCCCccccccccCcHHHHHHHhCCCCEEEEcCC------------ccc-------------CCCCCCCeEEEEeCCCh
Confidence 67777 67889999999999988886666511111 000 01245788999999999
Q ss_pred hHHHHHHHHHHhhccCCCEEEEEEEEecCCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHHHH
Q 037436 80 DAKGALEWALSHTVQCQDTIVLLYVIAKSSKQ-VKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPII 158 (236)
Q Consensus 80 ~s~~al~~A~~la~~~~~~l~llhV~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~~I 158 (236)
.+..++++|+.+|...+++|++|||.+..... ......++..+..++.++++.+.+....+++.+++.+..|++ .++|
T Consensus 183 ~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~I 261 (309)
T 3cis_A 183 ASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGWQERYPNVAITRVVVRDQP-ARQL 261 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTHHHHCTTSCEEEEEESSCH-HHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEEcCCH-HHHH
Confidence 99999999999999999999999998732211 001111233445555666665555443468999999999988 8999
Q ss_pred HHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 159 VEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 159 ~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
+++++ ++||||||+++++.+.++ ++||++++++++++||||+||+.
T Consensus 262 ~~~a~--~adliV~G~~~~~~~~~~---------l~Gsv~~~vl~~~~~pVlvv~~~ 307 (309)
T 3cis_A 262 VQRSE--EAQLVVVGSRGRGGYAGM---------LVGSVGETVAQLARTPVIVARES 307 (309)
T ss_dssp HHHHT--TCSEEEEESSCSSCCTTC---------SSCHHHHHHHHHCSSCEEEECC-
T ss_pred HHhhC--CCCEEEECCCCCCCcccc---------ccCcHHHHHHhcCCCCEEEeCCC
Confidence 99997 899999999999999998 99999999999999999999864
No 14
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.86 E-value=1.4e-21 Score=168.69 Aligned_cols=171 Identities=11% Similarity=0.144 Sum_probs=130.4
Q ss_pred CCCCC-CCCCccccccccccccccCCCcccccccCCCcccccccccCCCCChhhhhhccCCCCCCCCCCCEEEEEecCCH
Q 037436 1 MAKSH-SRSPRLSISRSISRVRVHSPSLQRKKVSKNSVETDQNVEFLGGGNAEEVEYVGNESSGSERYGNKVMVVADSSL 79 (236)
Q Consensus 1 ~~~~~-~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILV~vD~s~ 79 (236)
||..| ..+.++++|+...++...+|.++. -. ++. . .. .+++||||+|+++
T Consensus 95 ~G~~~~~~~~~~~~gs~~~~vl~~~~~PVl-vv-------------~~~----------~----~~-~~~~Ilva~D~s~ 145 (290)
T 3mt0_A 95 KQHFPDNPLKKAILTPDDWKLLRFAPCPVL-MT-------------KTA----------R----PW-TGGKILAAVDVGN 145 (290)
T ss_dssp EECCCSCTTSTTSCCHHHHHHHHHCSSCEE-EE-------------CCC----------S----CS-TTCEEEEEECTTC
T ss_pred EecccCCchhhcccCHHHHHHHhcCCCCEE-Ee-------------cCC----------C----CC-CCCeEEEEECCCC
Confidence 67777 668899999999999888877666 21 001 0 12 6889999999999
Q ss_pred h-------HHHHHHHHHHhhccCCCEEEEEEEEecCCCCch-h--HHHHHHHHHHHHHHHHHHHHhhhhCCCc-eEEEEE
Q 037436 80 D-------AKGALEWALSHTVQCQDTIVLLYVIAKSSKQVK-E--TKGKKLYLRAYEKLHSMKSTCQLKKPGV-QVEIAI 148 (236)
Q Consensus 80 ~-------s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~~~~~~v-~v~~~v 148 (236)
. +..++++|+.+|...+++|+++||++.+..... . ...++..+...+.++++.+.. ++ .+++.+
T Consensus 146 ~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~~~~v 220 (290)
T 3mt0_A 146 NDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAEY-----GFSDEQLHI 220 (290)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHHH-----TCCTTTEEE
T ss_pred cchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHHc-----CCCcceEEE
Confidence 8 899999999999999999999999984332110 0 122333334444444443322 44 256677
Q ss_pred EecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 149 TEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 149 ~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
..|++ .++|++++++.++||||||+++++++.++ ++||++++++++++||||+||+.
T Consensus 221 ~~g~~-~~~I~~~a~~~~~dLiVmG~~g~~~~~~~---------~~Gsv~~~vl~~~~~pVLvv~~~ 277 (290)
T 3mt0_A 221 EEGPA-DVLIPRTAQKLDAVVTVIGTVARTGLSGA---------LIGNTAEVVLDTLESDVLVLKPD 277 (290)
T ss_dssp EESCH-HHHHHHHHHHHTCSEEEEECCSSCCGGGC---------CSCHHHHHHHTTCSSEEEEECCH
T ss_pred eccCH-HHHHHHHHHhcCCCEEEECCCCCcCCcce---------ecchHHHHHHhcCCCCEEEECCC
Confidence 88988 89999999999999999999999999999 99999999999999999999864
No 15
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.85 E-value=9.8e-21 Score=164.92 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=120.2
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCC-c-------hhHHHHHHHHHHHHHHHHHHHHhhh
Q 037436 66 RYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQ-V-------KETKGKKLYLRAYEKLHSMKSTCQL 137 (236)
Q Consensus 66 ~~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~-~-------~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (236)
+++++|||++|+|+.+..+++||+.+|+..+++|++|||++..... . .....+...+.+++.++++.+.+.
T Consensus 5 ~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 83 (319)
T 3olq_A 5 EKYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYL- 83 (319)
T ss_dssp CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 5789999999999999999999999999999999999998632211 0 112223344556677777777665
Q ss_pred hCCCceEEEEEE-ecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 138 KKPGVQVEIAIT-EGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 138 ~~~~v~v~~~v~-~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
..++.+++.+. .|++ ...|++++++.++||||||+++++.+.++ ++||++++++++++||||+||...
T Consensus 84 -~~~v~~~~~~~~~g~~-~~~i~~~a~~~~~DLiV~G~~g~~~~~~~---------~~Gs~~~~vl~~~~~PVlvv~~~~ 152 (319)
T 3olq_A 84 -EAGIQIDIKVIWHNRP-YEAIIEEVITDKHDLLIKMAHQHDKLGSL---------IFTPLDWQLLRKCPAPVWMVKDKE 152 (319)
T ss_dssp -HTTCCEEEEEEECSCH-HHHHHHHHHHHTCSEEEEEEBCC--CCSC---------BCCHHHHHHHHHCSSCEEEEESSC
T ss_pred -hcCCeEEEEEEecCCh-HHHHHHHHHhcCCCEEEEecCcCchhhcc---------cccccHHHHHhcCCCCEEEecCcc
Confidence 34899999999 7888 89999999999999999999999988888 899999999999999999999875
Q ss_pred CC-CCceeeec
Q 037436 217 SK-LGGYLITT 226 (236)
Q Consensus 217 ~~-~~~~li~t 226 (236)
.. ....|+.+
T Consensus 153 ~~~~~~Ilva~ 163 (319)
T 3olq_A 153 WPEYGTIVVAA 163 (319)
T ss_dssp CCTTCEEEEEC
T ss_pred cccCCeEEEEE
Confidence 43 45566665
No 16
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.85 E-value=4e-21 Score=148.26 Aligned_cols=132 Identities=14% Similarity=0.156 Sum_probs=100.7
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEec-CCCCc--hhH----HHHHHHHHHHHHHHHHHHHhhhhC
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAK-SSKQV--KET----KGKKLYLRAYEKLHSMKSTCQLKK 139 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~-~~~~~--~~~----~~~~~~~~~~~~l~~~~~~~~~~~ 139 (236)
|+++||||+|+++.+..+++||+.+|...+++|+++||.+. +.... ... ..+...+..++.++++.+. .
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~- 76 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAES---V- 76 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHH---S-
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHH---c-
Confidence 68999999999999999999999999999999999999953 21110 000 1111122334444444332 1
Q ss_pred CCceE-EEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 140 PGVQV-EIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 140 ~~v~v-~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
++.+ ++.+..|++ .+.|+++|++.++||||||++ ++.+.++ ||++++++++++||||+||...
T Consensus 77 -~~~~~~~~~~~g~~-~~~I~~~a~~~~~dliV~G~~-~~~~~~l-----------gs~~~~vl~~~~~pVlvv~~~~ 140 (141)
T 1jmv_A 77 -DYPISEKLSGSGDL-GQVLSDAIEQYDVDLLVTGHH-QDFWSKL-----------MSSTRQVMNTIKIDMLVVPLRD 140 (141)
T ss_dssp -SSCCCCEEEEEECH-HHHHHHHHHHTTCCEEEEEEC-CCCHHHH-----------HHHHHHHHTTCCSEEEEEECCC
T ss_pred -CCCceEEEEecCCH-HHHHHHHHHhcCCCEEEEeCC-Cchhhhh-----------cchHHHHHhcCCCCEEEeeCCC
Confidence 4554 567778988 899999999999999999999 8877654 7999999999999999999764
No 17
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.85 E-value=6.7e-21 Score=164.64 Aligned_cols=148 Identities=17% Similarity=0.175 Sum_probs=125.0
Q ss_pred CCCCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCC------chhHHHHHHHHHHHHHHHHHHHHhhhh
Q 037436 65 ERYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQ------VKETKGKKLYLRAYEKLHSMKSTCQLK 138 (236)
Q Consensus 65 ~~~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (236)
.+|+++|||++|+++.+..+++||+.+|+..+++|++|||++.+... ......+...+.+++.++++.+.+...
T Consensus 19 m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 98 (294)
T 3loq_A 19 YFQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIEAA 98 (294)
T ss_dssp SSTTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999999999844321 123444566677888888888888744
Q ss_pred CCCceEEE-EEE-ecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 139 KPGVQVEI-AIT-EGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 139 ~~~v~v~~-~v~-~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
++++++ .+. .|++ .+.| ++++.++||||||+++++.+.++ ++||++++++++++|||++||...
T Consensus 99 --g~~~~~~~v~~~g~~-~~~I--~a~~~~~DliV~G~~g~~~~~~~---------~~Gs~~~~vl~~~~~PVlvv~~~~ 164 (294)
T 3loq_A 99 --GIKAEVIKPFPAGDP-VVEI--IKASENYSFIAMGSRGASKFKKI---------LLGSVSEGVLHDSKVPVYIFKHDM 164 (294)
T ss_dssp --TCEEEECSSCCEECH-HHHH--HHHHTTSSEEEEECCCCCHHHHH---------HHCCHHHHHHHHCSSCEEEECCCT
T ss_pred --CCCcceeEeeccCCh-hHhe--eeccCCCCEEEEcCCCCccccce---------eeccHHHHHHhcCCCCEEEecCcc
Confidence 899998 777 8988 7888 99999999999999999999888 899999999999999999999875
Q ss_pred ---CCCCceeeec
Q 037436 217 ---SKLGGYLITT 226 (236)
Q Consensus 217 ---~~~~~~li~t 226 (236)
.....+++.+
T Consensus 165 ~~~~~~~~Ilv~~ 177 (294)
T 3loq_A 165 VVNSLFDRVLVAY 177 (294)
T ss_dssp TTTCTTSEEEEEC
T ss_pred ccCccCCEEEEEE
Confidence 4455666665
No 18
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.85 E-value=3.8e-21 Score=166.20 Aligned_cols=164 Identities=18% Similarity=0.193 Sum_probs=133.4
Q ss_pred CCCCC-CCCCccccccccccccccCCCcccccccCCCcccccccccCCCCChhhhhhccCCCCCCCCCCCEEEEEecCCH
Q 037436 1 MAKSH-SRSPRLSISRSISRVRVHSPSLQRKKVSKNSVETDQNVEFLGGGNAEEVEYVGNESSGSERYGNKVMVVADSSL 79 (236)
Q Consensus 1 ~~~~~-~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILV~vD~s~ 79 (236)
||..| ..+.++++|+...++...+|.++.-.|.. . +....+++|||++|+++
T Consensus 129 ~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~--------------~-------------~~~~~~~~Ilv~~d~s~ 181 (294)
T 3loq_A 129 MGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKHD--------------M-------------VVNSLFDRVLVAYDFSK 181 (294)
T ss_dssp EECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECCC--------------T-------------TTTCTTSEEEEECCSSH
T ss_pred EcCCCCccccceeeccHHHHHHhcCCCCEEEecCc--------------c-------------ccCccCCEEEEEECCCH
Confidence 57776 55778889999888888887666511110 0 00247889999999999
Q ss_pred hHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHHHHH
Q 037436 80 DAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIV 159 (236)
Q Consensus 80 ~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~~I~ 159 (236)
.+..++++|+.+|...+++|++|||.+.+. .++.++++.+.++.. ++++++.+..|++ .++|+
T Consensus 182 ~s~~al~~a~~la~~~~~~l~ll~v~~~~~--------------~~~~l~~~~~~l~~~--~~~~~~~~~~g~~-~~~I~ 244 (294)
T 3loq_A 182 WADRALEYAKFVVKKTGGELHIIHVSEDGD--------------KTADLRVMEEVIGAE--GIEVHVHIESGTP-HKAIL 244 (294)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECSSSC--------------CHHHHHHHHHHHHHT--TCCEEEEEECSCH-HHHHH
T ss_pred HHHHHHHHHHHHhhhcCCEEEEEEEccCch--------------HHHHHHHHHHHHHHc--CCcEEEEEecCCH-HHHHH
Confidence 999999999999999999999999988322 233455555555543 7888888889987 89999
Q ss_pred HHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCCC
Q 037436 160 EEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSS 217 (236)
Q Consensus 160 ~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~~ 217 (236)
+++++.++||||||+++++++.++ ++||++++++++++||||+||+...
T Consensus 245 ~~a~~~~~dLlV~G~~~~~~~~~~---------~~Gs~~~~vl~~~~~pvLvv~~~~~ 293 (294)
T 3loq_A 245 AKREEINATTIFMGSRGAGSVMTM---------ILGSTSESVIRRSPVPVFVCKRGDD 293 (294)
T ss_dssp HHHHHTTCSEEEEECCCCSCHHHH---------HHHCHHHHHHHHCSSCEEEECSCTT
T ss_pred HHHHhcCcCEEEEeCCCCCCccce---------eeCcHHHHHHhcCCCCEEEECCCCC
Confidence 999999999999999999999999 9999999999999999999998754
No 19
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.84 E-value=3.7e-20 Score=161.17 Aligned_cols=149 Identities=13% Similarity=0.111 Sum_probs=121.7
Q ss_pred CCCCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCC------chhHHHHHHHHHHHHHHHHHHHHhhhh
Q 037436 65 ERYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQ------VKETKGKKLYLRAYEKLHSMKSTCQLK 138 (236)
Q Consensus 65 ~~~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (236)
..++++|||++|+++.+..+++||+.+|+..+++|++|||++ +... ......+...+.+++.++++.+.+...
T Consensus 16 ~~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 94 (309)
T 3cis_A 16 GNSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVS-PEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQA 94 (309)
T ss_dssp --CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECC-CCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEec-CcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999987 3221 112333445566777888887777654
Q ss_pred ---CCCceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 139 ---KPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 139 ---~~~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
.+++++++.+..|++ .+.|+++++ ++||||||+++++.+.++ ++||++++|+++++|||++||..
T Consensus 95 ~~~~~~~~~~~~~~~g~~-~~~I~~~a~--~~DliV~G~~g~~~~~~~---------~~Gs~~~~vl~~~~~PVlvv~~~ 162 (309)
T 3cis_A 95 SLRAGPPTVHSEIVPAAA-VPTLVDMSK--DAVLMVVGCLGSGRWPGR---------LLGSVSSGLLRHAHCPVVIIHDE 162 (309)
T ss_dssp CSSSCCSCEEEEEESSCH-HHHHHHHGG--GEEEEEEESSCTTCCTTC---------CSCHHHHHHHHHCSSCEEEECTT
T ss_pred cccCCCceEEEEEecCCH-HHHHHHHhc--CCCEEEECCCCCcccccc---------ccCcHHHHHHHhCCCCEEEEcCC
Confidence 458999999999988 899999996 899999999999988888 89999999999999999999976
Q ss_pred CC-----CCCceeeec
Q 037436 216 SS-----KLGGYLITT 226 (236)
Q Consensus 216 ~~-----~~~~~li~t 226 (236)
.. .....++.+
T Consensus 163 ~~~~~~~~~~~Ilv~~ 178 (309)
T 3cis_A 163 DSVMPHPQQAPVLVGV 178 (309)
T ss_dssp CCCSCSSCCCCEEEEC
T ss_pred cccCCCCCCCeEEEEe
Confidence 53 344566655
No 20
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.84 E-value=8.1e-21 Score=165.44 Aligned_cols=173 Identities=12% Similarity=0.096 Sum_probs=132.0
Q ss_pred CCCCC-CCCCccccccccccccccCCCcccccccCCCcccccccccCCCCChhhhhhccCCCCCCCCCCCEEEEEecCCH
Q 037436 1 MAKSH-SRSPRLSISRSISRVRVHSPSLQRKKVSKNSVETDQNVEFLGGGNAEEVEYVGNESSGSERYGNKVMVVADSSL 79 (236)
Q Consensus 1 ~~~~~-~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILV~vD~s~ 79 (236)
||..| +.+.++++|+...++...+|.++. .... . ....+++|||++|+++
T Consensus 117 ~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVl-vv~~-------------~---------------~~~~~~~Ilva~D~s~ 167 (319)
T 3olq_A 117 KMAHQHDKLGSLIFTPLDWQLLRKCPAPVW-MVKD-------------K---------------EWPEYGTIVVAANLSN 167 (319)
T ss_dssp EEEBCC--CCSCBCCHHHHHHHHHCSSCEE-EEES-------------S---------------CCCTTCEEEEECCCSC
T ss_pred EecCcCchhhcccccccHHHHHhcCCCCEE-EecC-------------c---------------ccccCCeEEEEECCCC
Confidence 57777 678899999999999888877666 2100 0 0236889999999998
Q ss_pred -------hHHHHHHHHHHhhccC--CCEEEEEEEEecCCCCc--------hhHHHHHHHHHHHHHHHHHHHHhhhhCCCc
Q 037436 80 -------DAKGALEWALSHTVQC--QDTIVLLYVIAKSSKQV--------KETKGKKLYLRAYEKLHSMKSTCQLKKPGV 142 (236)
Q Consensus 80 -------~s~~al~~A~~la~~~--~~~l~llhV~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 142 (236)
.+..++++|+.+|... +++|++|||++.+.... .....++..+...+.++.+.+.. ++
T Consensus 168 ~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~ 242 (319)
T 3olq_A 168 EESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMKELRQKF-----SI 242 (319)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHHHHHHHT-----TC
T ss_pred cchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHh-----CC
Confidence 5799999999999998 99999999998443221 12233334444455554444322 23
Q ss_pred -eEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCCC
Q 037436 143 -QVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSS 217 (236)
Q Consensus 143 -~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~~ 217 (236)
.+++.+..|++ .+.|++++++.++||||||+++++++.++ ++||++++++++++||||+||+...
T Consensus 243 ~~~~~~v~~g~~-~~~I~~~a~~~~~dLiV~G~~g~~~~~~~---------~~Gsv~~~vl~~~~~pVLvv~~~~~ 308 (319)
T 3olq_A 243 PEEKTHVKEGLP-EQVIPQVCEELNAGIVVLGILGRTGLSAA---------FLGNTAEQLIDHIKCDLLAIKPDGF 308 (319)
T ss_dssp CGGGEEEEESCH-HHHHHHHHHHTTEEEEEEECCSCCSTHHH---------HHHHHHHHHHTTCCSEEEEECCTTC
T ss_pred CcccEEEecCCc-HHHHHHHHHHhCCCEEEEeccCccCCccc---------cccHHHHHHHhhCCCCEEEECCCCC
Confidence 35566778988 89999999999999999999999999999 9999999999999999999998753
No 21
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.84 E-value=8.6e-20 Score=155.35 Aligned_cols=144 Identities=22% Similarity=0.282 Sum_probs=117.3
Q ss_pred CEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCc---------hhHH-------HHHHHHHHHHHHHHHH
Q 037436 69 NKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQV---------KETK-------GKKLYLRAYEKLHSMK 132 (236)
Q Consensus 69 ~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~---------~~~~-------~~~~~~~~~~~l~~~~ 132 (236)
++|||++|+|+.+..+++||+.+|...+++|+++||++.+.... .... .+...+..++.++++.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVR 80 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999987332110 0001 2233455667777777
Q ss_pred HHhhhhCCCceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCC-chhhhhhhccCCCcccCcHHHHHHHhCCCeEEE
Q 037436 133 STCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKS-IVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIA 211 (236)
Q Consensus 133 ~~~~~~~~~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s-~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlv 211 (236)
+.+... ++++++.+..|++ .+.|+++ +.++||||||+++++ .+.++ ++||++++++++++|||++
T Consensus 81 ~~~~~~--g~~~~~~~~~g~~-~~~I~~~--~~~~dliV~G~~g~~~~~~~~---------~~Gs~~~~v~~~a~~PVlv 146 (268)
T 3ab8_A 81 QSALAA--GVAVEAVLEEGVP-HEAILRR--ARAADLLVLGRSGEAHGDGFG---------GLGSTADRVLRASPVPVLL 146 (268)
T ss_dssp HHHHHT--TCCEEEEEEEECH-HHHHHHH--HTTCSEEEEESSCTTSCTTCC---------SCCHHHHHHHHHCSSCEEE
T ss_pred HHHHhC--CCCeEEEEecCCH-HHHHHhh--ccCCCEEEEeccCCCcccccc---------ccchhHHHHHHhCCCCEEE
Confidence 777643 8889999999998 8999999 889999999999998 88888 8999999999999999999
Q ss_pred EeCCCCCCCceeeec
Q 037436 212 VRRKSSKLGGYLITT 226 (236)
Q Consensus 212 V~~~~~~~~~~li~t 226 (236)
||.........++.+
T Consensus 147 v~~~~~~~~~ilv~~ 161 (268)
T 3ab8_A 147 APGEPVELEGALLGY 161 (268)
T ss_dssp ECSSCCCCCEEEEEC
T ss_pred ECCCCCCCCEEEEEE
Confidence 998765555667665
No 22
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.83 E-value=2.5e-20 Score=143.38 Aligned_cols=127 Identities=11% Similarity=0.067 Sum_probs=102.2
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEE-ec-CC-C------Cc-hhHHHHHHHHHHHHHHHHHHHHh
Q 037436 66 RYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVI-AK-SS-K------QV-KETKGKKLYLRAYEKLHSMKSTC 135 (236)
Q Consensus 66 ~~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~-~~-~~-~------~~-~~~~~~~~~~~~~~~l~~~~~~~ 135 (236)
.++++|||++|+++.+..+++||+.+|...+++|++|||+ +. +. . .. .....+...+..++.++++ +.+
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 80 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEK 80 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHH
Confidence 4789999999999999999999999999999999999998 62 10 0 00 1233344556667777777 664
Q ss_pred hhhCCCceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEe
Q 037436 136 QLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVR 213 (236)
Q Consensus 136 ~~~~~~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~ 213 (236)
+...++ ++++.+..|++ .+.|+++|++.++||||||++++ |++++++++++||||+||
T Consensus 81 ~~~~~~-~~~~~~~~g~~-~~~I~~~a~~~~~dliV~G~~g~------------------sv~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 81 LTGSTE-IPGVEYRIGPL-SEEVKKFVEGKGYELVVWACYPS------------------AYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp HHSCCC-CCCEEEECSCH-HHHHHHHHTTSCCSEEEECSCCG------------------GGTHHHHHHSSSEEEECC
T ss_pred hhccCC-cceEEEEcCCH-HHHHHHHHHhcCCCEEEEeCCCC------------------chHHHHHHhCCCceEeeC
Confidence 223456 77888888988 89999999999999999999864 488999999999999986
No 23
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.81 E-value=8.8e-20 Score=157.45 Aligned_cols=135 Identities=12% Similarity=0.027 Sum_probs=112.4
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEE
Q 037436 66 RYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVE 145 (236)
Q Consensus 66 ~~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 145 (236)
+++++|||++|+++.+..+++||+.+|...+++|+++||++ + +..++.++++.+.+. .++++++
T Consensus 5 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~-~-------------~~~~~~l~~~~~~~~--~~~~~~~ 68 (290)
T 3mt0_A 5 QAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEK-R-------------RDHSAALNDLAQELR--EEGYSVS 68 (290)
T ss_dssp TTCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECS-S-------------SCCHHHHHHHHHHHH--HTTCCEE
T ss_pred hhhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeC-c-------------HHHHHHHHHHHHHHh--hCCCeEE
Confidence 46899999999999999999999999999999999999987 3 122334444555444 3489999
Q ss_pred EEEEe-cCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC-CCCCCcee
Q 037436 146 IAITE-GKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK-SSKLGGYL 223 (236)
Q Consensus 146 ~~v~~-G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~-~~~~~~~l 223 (236)
+.+.. |++ .+.|++++++.++||||||+++++.+.+. ++||++++++++++||||+||.. .......|
T Consensus 69 ~~~~~~g~~-~~~i~~~a~~~~~dliV~G~~~~~~~~~~---------~~gs~~~~vl~~~~~PVlvv~~~~~~~~~~Il 138 (290)
T 3mt0_A 69 TNQAWKDSL-HQTIIAEQQAEGCGLIIKQHFPDNPLKKA---------ILTPDDWKLLRFAPCPVLMTKTARPWTGGKIL 138 (290)
T ss_dssp EEEECSSSH-HHHHHHHHHHHTCSEEEEECCCSCTTSTT---------SCCHHHHHHHHHCSSCEEEECCCSCSTTCEEE
T ss_pred EEEEeCCCH-HHHHHHHHHhcCCCEEEEecccCCchhhc---------ccCHHHHHHHhcCCCCEEEecCCCCCCCCeEE
Confidence 99885 667 89999999999999999999999988888 99999999999999999999943 33455566
Q ss_pred eec
Q 037436 224 ITT 226 (236)
Q Consensus 224 i~t 226 (236)
+.+
T Consensus 139 va~ 141 (290)
T 3mt0_A 139 AAV 141 (290)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.78 E-value=7.2e-19 Score=149.62 Aligned_cols=152 Identities=18% Similarity=0.112 Sum_probs=123.2
Q ss_pred CCCCC-C-CCCccccccccccccccCCCcccccccCCCcccccccccCCCCChhhhhhccCCCCCCCCCCCEEEEEecCC
Q 037436 1 MAKSH-S-RSPRLSISRSISRVRVHSPSLQRKKVSKNSVETDQNVEFLGGGNAEEVEYVGNESSGSERYGNKVMVVADSS 78 (236)
Q Consensus 1 ~~~~~-~-~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILV~vD~s 78 (236)
||..| . .+.++++|+...++...+|.++. .... . ...+++|||++|++
T Consensus 115 ~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVl-vv~~-------------~----------------~~~~~~ilv~~d~s 164 (268)
T 3ab8_A 115 LGRSGEAHGDGFGGLGSTADRVLRASPVPVL-LAPG-------------E----------------PVELEGALLGYDAS 164 (268)
T ss_dssp EESSCTTSCTTCCSCCHHHHHHHHHCSSCEE-EECS-------------S----------------CCCCCEEEEECCSC
T ss_pred EeccCCCccccccccchhHHHHHHhCCCCEE-EECC-------------C----------------CCCCCEEEEEECCC
Confidence 67777 5 78899999999999888877666 2100 0 01567999999999
Q ss_pred HhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHHHH
Q 037436 79 LDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPII 158 (236)
Q Consensus 79 ~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~~I 158 (236)
+.+..++++|..++...+++|+++||.+.+ +..++.++++.+.+... ++++++.+..|++ .++|
T Consensus 165 ~~~~~al~~a~~la~~~~a~l~ll~v~~~~-------------~~~~~~l~~~~~~l~~~--~~~~~~~~~~g~~-~~~i 228 (268)
T 3ab8_A 165 ESAVRALHALAPLARALGLGVRVVSVHEDP-------------ARAEAWALEAEAYLRDH--GVEASALVLGGDA-ADHL 228 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEECSSH-------------HHHHHHHHHHHHHHHHT--TCCEEEEEECSCH-HHHH
T ss_pred HHHHHHHHHHHHhhhcCCCEEEEEEEcCcH-------------HHHHHHHHHHHHHHHHc--CCceEEEEeCCCh-HHHH
Confidence 999999999999999999999999998721 12344555666665543 7889988888988 8999
Q ss_pred HHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEe
Q 037436 159 VEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVR 213 (236)
Q Consensus 159 ~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~ 213 (236)
++++++. ||||||+ ++.++ ++||++++++++++||||+||
T Consensus 229 ~~~a~~~--dliV~G~----~~~~~---------~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 229 LRLQGPG--DLLALGA----PVRRL---------VFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp HHHCCTT--EEEEEEC----CCSCC---------SSCCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHhC--CEEEECC----ccccc---------EeccHHHHHHhcCCCCEEEeC
Confidence 9999887 9999999 56667 899999999999999999986
No 25
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=93.80 E-value=0.42 Score=40.89 Aligned_cols=120 Identities=12% Similarity=0.019 Sum_probs=83.5
Q ss_pred CCCEEEEEecC----------CHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 037436 67 YGNKVMVVADS----------SLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQ 136 (236)
Q Consensus 67 ~~~~ILV~vD~----------s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 136 (236)
..++|=|=+.+ ..+..-++-.|..+..+.+++|.++-|++ +++..+.+++.++++.+.++
T Consensus 154 ~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~----------de~a~~~a~~~l~~Lv~~~R 223 (294)
T 3g40_A 154 RQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAP----------TAIQAQAAENFLQSLAELAR 223 (294)
T ss_dssp TSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECS----------SHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecC----------CHHHHHHHHHHHHHHHHHhc
Confidence 45666666333 23444466667777667899999999988 34556667888888888776
Q ss_pred hhCCCceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 137 LKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 137 ~~~~~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
. +.... ++. .+ ...|+..+ .++||+++|-.....++ +.++++..+.-.+++|++.+
T Consensus 224 i---~a~~~--vv~-~~-F~~il~~s--~~ADL~flGl~~~~df~---------------~~~~~~~~~~ssc~f~~dsg 279 (294)
T 3g40_A 224 I---PNVKM--QVL-RE-NPIKSSKL--PFASLHIFSLDPNPDLD---------------LARHLMEKAGSSCIFALDSG 279 (294)
T ss_dssp C---CSCEE--EEE-SS-CTTTSSSC--CCCSEEEEECCSSCCHH---------------HHHHHHHHHTSEEEEEECCS
T ss_pred C---CceEE--Eec-Cc-hHHHHhhC--cCCCEEEEcCCCCCcHH---------------HHHHHHHhcCCeEEEEecCc
Confidence 4 23333 223 44 56777665 67999999997665554 55889999999999999987
Q ss_pred CCCC
Q 037436 217 SKLG 220 (236)
Q Consensus 217 ~~~~ 220 (236)
....
T Consensus 280 ~e~~ 283 (294)
T 3g40_A 280 EENA 283 (294)
T ss_dssp CCCH
T ss_pred hhHH
Confidence 6543
No 26
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=93.39 E-value=1.2 Score=33.80 Aligned_cols=129 Identities=17% Similarity=0.033 Sum_probs=79.9
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHhhccCC-CEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEE-
Q 037436 68 GNKVMVVADSSLDAKGALEWALSHTVQCQ-DTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVE- 145 (236)
Q Consensus 68 ~~~ILV~vD~s~~s~~al~~A~~la~~~~-~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~- 145 (236)
|++|||.+.-.-.+.........+..... .+.++|--.. + ........++....+++.|+.-...++. .|+.++
T Consensus 1 m~~vlVlae~tl~~~dl~~vl~~l~~~~~~~~f~VLVPa~-~-~~a~~~e~~~a~~~A~~~l~~sl~aL~~--~G~~a~~ 76 (138)
T 2iel_A 1 MARYLVVAHRTAKSPELAAKLKELLAQDPEARFVLLVPAV-P-PPGWVYEENEVRRRAEEEAAAAKRALEA--QGIPVEE 76 (138)
T ss_dssp -CEEEEECSTTTTCHHHHHHHHHHHHHCTTCEEEEEEEEE-C-CCCSCC--CHHHHHHHHHHHHHHHHHHT--TTCCCSE
T ss_pred CceEEEEecCccCcHhHHHHHHHhhcCCCceEEEEEecCC-C-CcccccChHHHHHHHHHHHHHHHHHHHH--cCCcccc
Confidence 47899999887666666655455554443 4443333222 1 1111111223444556666666665553 388888
Q ss_pred EEEEecCChHHHHHHHHHHCC--CCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEE
Q 037436 146 IAITEGKEKGPIIVEEAKRQN--VSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAV 212 (236)
Q Consensus 146 ~~v~~G~~~~~~I~~~a~~~~--~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV 212 (236)
-.+..++| ..+|.+...+.+ +|=||+-+..+.. ..+ |--+.+.+.=+ ..+||+=+
T Consensus 77 G~v~d~~P-l~AL~~~v~~~~~~~deiIV~T~Ph~v-s~~---------fh~DwasrAr~-~gvPVlhl 133 (138)
T 2iel_A 77 AKAGDISP-LLAIEEELLAHPGAYQGIVLSTLPPGL-SRW---------LRLDVHTQAER-FGLPVIHV 133 (138)
T ss_dssp EEEEESSH-HHHHHHHHHHSTTSCSEEEEEECCTTT-CHH---------HHTTHHHHGGG-GSSCEEEE
T ss_pred cccCCCCh-HHHHHHHHHhcCCCCceEEEEcCCchH-HHH---------HhccHHHHHHh-cCCCEEEE
Confidence 89999999 799999999999 9999999987532 222 33344444444 78888754
No 27
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=93.32 E-value=0.35 Score=43.94 Aligned_cols=98 Identities=15% Similarity=0.138 Sum_probs=67.6
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEE
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEI 146 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 146 (236)
...+|+|++.+..+|..++..+..+....+.+|+++||.. .... ..+.+..+.+++.|+.. ++.+.+
T Consensus 17 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdh-glrg----------~~s~~~~~~v~~~~~~l--gi~~~v 83 (464)
T 3a2k_A 17 EGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDH-MFRG----------RESEEEMEFVKRFCVER--RILCET 83 (464)
T ss_dssp CSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEEC-TTCT----------HHHHHHHHHHHHHHHHT--TCEEEE
T ss_pred CCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEEC-CCCc----------cccHHHHHHHHHHHHHc--CCcEEE
Confidence 4567999999999999999888888776788999999976 2110 11222334466666643 666665
Q ss_pred EEEec--------CC--------hHHHHHHHHHHCCCCEEEEccCCC
Q 037436 147 AITEG--------KE--------KGPIIVEEAKRQNVSLLVLGQRRK 177 (236)
Q Consensus 147 ~v~~G--------~~--------~~~~I~~~a~~~~~DLLVmG~~~~ 177 (236)
.-+.. .. +...+.++|++.+++.|++|++..
T Consensus 84 ~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~d 130 (464)
T 3a2k_A 84 AQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGD 130 (464)
T ss_dssp EECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHH
T ss_pred EEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChH
Confidence 54431 11 135677888889999999998754
No 28
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=92.89 E-value=0.93 Score=35.94 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=47.0
Q ss_pred CceEEEEEEecCChHHHHHHHHH---HCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCCC
Q 037436 141 GVQVEIAITEGKEKGPIIVEEAK---RQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSS 217 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~a~---~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~~ 217 (236)
+|.+++.+..-...-+.+.++++ +++++++|.|.-.-..+-+. +.-.++.||+-||-+++
T Consensus 49 gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGv-----------------vAa~T~~PVIGVPv~s~ 111 (181)
T 4b4k_A 49 NIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGM-----------------VAAKTNLPVIGVPVQSK 111 (181)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH-----------------HHTTCCSCEEEEECCCT
T ss_pred CCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhh-----------------HHhcCCCCEEEEecCCC
Confidence 78899998875543456666665 47889999998766665554 34578999999999877
Q ss_pred CCCc
Q 037436 218 KLGG 221 (236)
Q Consensus 218 ~~~~ 221 (236)
..+|
T Consensus 112 ~l~G 115 (181)
T 4b4k_A 112 ALNG 115 (181)
T ss_dssp TTTT
T ss_pred Cccc
Confidence 6554
No 29
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=92.89 E-value=1.2 Score=38.27 Aligned_cols=97 Identities=8% Similarity=0.034 Sum_probs=64.0
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCE-EEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEE
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDT-IVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVE 145 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~-l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 145 (236)
...+|+|++.+..+|..++..+..+....+.+ |.++||.. ... . ...+..+.+++.|+.. ++.+.
T Consensus 23 ~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~-g~r---~--------~s~~~~~~v~~~a~~l--gi~~~ 88 (317)
T 1wy5_A 23 GERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNH-MLR---E--------SAERDEEFCKEFAKER--NMKIF 88 (317)
T ss_dssp SCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEEC-CSS---T--------HHHHHHHHHHHHHHHH--TCCEE
T ss_pred CCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEEC-CCC---c--------ccHHHHHHHHHHHHHc--CCcEE
Confidence 45789999999999998888887776666677 99999976 211 1 1112233345555543 56555
Q ss_pred EEEEe--------cCC--------hHHHHHHHHHHCCCCEEEEccCCC
Q 037436 146 IAITE--------GKE--------KGPIIVEEAKRQNVSLLVLGQRRK 177 (236)
Q Consensus 146 ~~v~~--------G~~--------~~~~I~~~a~~~~~DLLVmG~~~~ 177 (236)
+.-.. |.. +...+.+.+++.+++.|+.|++..
T Consensus 89 v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~d 136 (317)
T 1wy5_A 89 VGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLN 136 (317)
T ss_dssp EEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHH
T ss_pred EEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchh
Confidence 54432 111 234677788899999999998754
No 30
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=92.61 E-value=1 Score=35.51 Aligned_cols=64 Identities=14% Similarity=0.182 Sum_probs=46.0
Q ss_pred CceEEEEEEecCChHHHHHHHHH---HCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCCC
Q 037436 141 GVQVEIAITEGKEKGPIIVEEAK---RQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSS 217 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~a~---~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~~ 217 (236)
++.+++.+..-...-+.+.++++ .+++++||.+.-.-..+-+. +.-.+++||+-||-+..
T Consensus 39 gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgv-----------------vA~~t~~PVIgVPv~~~ 101 (173)
T 4grd_A 39 GVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGM-----------------LAAKTTVPVLGVPVASK 101 (173)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHH-----------------HHHHCCSCEEEEEECCT
T ss_pred CCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhh-----------------heecCCCCEEEEEcCCC
Confidence 78888888875543455666654 47899999998766555544 45578999999998776
Q ss_pred CCCc
Q 037436 218 KLGG 221 (236)
Q Consensus 218 ~~~~ 221 (236)
..+|
T Consensus 102 ~l~G 105 (173)
T 4grd_A 102 YLKG 105 (173)
T ss_dssp TTTT
T ss_pred CCCc
Confidence 5544
No 31
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=91.58 E-value=1.5 Score=34.45 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=45.5
Q ss_pred CceEEEEEEecCChHHHHHHHH---HHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCCC
Q 037436 141 GVQVEIAITEGKEKGPIIVEEA---KRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSS 217 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~a---~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~~ 217 (236)
++.+++.+..-....+.+.+++ ++.+++++|.+.-.-..+-.. +.-.+++||+-||-...
T Consensus 33 gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------------vA~~t~~PVIgVP~~~~ 95 (169)
T 3trh_A 33 GIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGT-----------------IAAHTLKPVIGVPMAGG 95 (169)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHH-----------------HHHTCSSCEEEEECCCS
T ss_pred CCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH-----------------HHhcCCCCEEEeecCCC
Confidence 7888888887443345555554 458899999887765555544 45688999999998865
Q ss_pred CCCc
Q 037436 218 KLGG 221 (236)
Q Consensus 218 ~~~~ 221 (236)
..+|
T Consensus 96 ~l~G 99 (169)
T 3trh_A 96 SLGG 99 (169)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 5544
No 32
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=91.35 E-value=1.6 Score=34.35 Aligned_cols=64 Identities=11% Similarity=0.177 Sum_probs=46.4
Q ss_pred CceEEEEEEecCChHHHHHHHHH---HCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCCC
Q 037436 141 GVQVEIAITEGKEKGPIIVEEAK---RQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSS 217 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~a~---~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~~ 217 (236)
++.+++.+..-....+.+.++++ +.+++++|.+.-.-..+-.. +.-.+++||+-||-...
T Consensus 39 Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------------vA~~t~~PVIgVP~~~~ 101 (174)
T 3kuu_A 39 NVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGM-----------------LAAKTLVPVLGVPVQSA 101 (174)
T ss_dssp TCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHH-----------------HHHTCSSCEEEEEECCT
T ss_pred CCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH-----------------HHhccCCCEEEeeCCCC
Confidence 78888888875443566777765 47789999887765555444 45688999999998766
Q ss_pred CCCc
Q 037436 218 KLGG 221 (236)
Q Consensus 218 ~~~~ 221 (236)
..+|
T Consensus 102 ~l~G 105 (174)
T 3kuu_A 102 ALSG 105 (174)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 5544
No 33
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=90.82 E-value=2.7 Score=32.86 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=46.5
Q ss_pred CceEEEEEEecCChHHHHHHHHHH---CCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCCC
Q 037436 141 GVQVEIAITEGKEKGPIIVEEAKR---QNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSS 217 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~a~~---~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~~ 217 (236)
++.+++.+..-....+.+.+++++ .+++++|.+.-.-..+-.. +.-.+++||+-||-...
T Consensus 32 gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv-----------------vA~~t~~PVIgVP~~~~ 94 (166)
T 3oow_A 32 GIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGM-----------------VAAKTTLPVLGVPVKSS 94 (166)
T ss_dssp TCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH-----------------HHHTCSSCEEEEECCCT
T ss_pred CCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHH-----------------HHhccCCCEEEeecCcC
Confidence 788888888754435677777764 5689999988765555544 45688999999998765
Q ss_pred CCCc
Q 037436 218 KLGG 221 (236)
Q Consensus 218 ~~~~ 221 (236)
..+|
T Consensus 95 ~l~G 98 (166)
T 3oow_A 95 TLNG 98 (166)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 4544
No 34
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=90.10 E-value=2.2 Score=33.41 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=45.8
Q ss_pred CceEEEEEEecCChHHHHHHHHHH---CCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCCC
Q 037436 141 GVQVEIAITEGKEKGPIIVEEAKR---QNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSS 217 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~a~~---~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~~ 217 (236)
++.+++.+..-....+.+.+++++ .+++++|.+.-.-..+-.. +.-.+++||+-||-...
T Consensus 38 Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------------vA~~t~~PVIgVP~~~~ 100 (170)
T 1xmp_A 38 NIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGM-----------------VAAKTNLPVIGVPVQSK 100 (170)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH-----------------HHTTCCSCEEEEEECCT
T ss_pred CCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH-----------------HHhccCCCEEEeeCCCC
Confidence 788888888754435677777664 5689999888766555554 44578999999998765
Q ss_pred CCCc
Q 037436 218 KLGG 221 (236)
Q Consensus 218 ~~~~ 221 (236)
..+|
T Consensus 101 ~l~G 104 (170)
T 1xmp_A 101 ALNG 104 (170)
T ss_dssp TTTT
T ss_pred CCCc
Confidence 4444
No 35
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=89.99 E-value=2.6 Score=32.80 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=48.7
Q ss_pred HHHHhhhhCCCceEEEEEEecCChHHHHHHHHH---HCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCC
Q 037436 131 MKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAK---RQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSR 207 (236)
Q Consensus 131 ~~~~~~~~~~~v~v~~~v~~G~~~~~~I~~~a~---~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~ 207 (236)
+...++.. ++.+++.+..-....+.+.++++ +.+++++|.+.-.-..+-.. +.-.+++
T Consensus 22 a~~~l~~~--gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------------vA~~t~~ 82 (163)
T 3ors_A 22 SCNMLDYF--EIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGM-----------------VASLTTL 82 (163)
T ss_dssp HHHHHHHT--TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH-----------------HHHHCSS
T ss_pred HHHHHHHc--CCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH-----------------HHhccCC
Confidence 34444433 78888888875443566666665 46789999887765555444 4557899
Q ss_pred eEEEEeCCCCCCCc
Q 037436 208 MTIAVRRKSSKLGG 221 (236)
Q Consensus 208 PVlvV~~~~~~~~~ 221 (236)
||+-||-.....+|
T Consensus 83 PVIgVP~~~~~l~G 96 (163)
T 3ors_A 83 PVIGVPIETKSLKG 96 (163)
T ss_dssp CEEEEEECCTTTTT
T ss_pred CEEEeeCCCCCCCC
Confidence 99999987654444
No 36
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=89.65 E-value=2.8 Score=33.27 Aligned_cols=64 Identities=14% Similarity=0.226 Sum_probs=46.1
Q ss_pred CceEEEEEEecCChHHHHHHHHHH---CCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCCC
Q 037436 141 GVQVEIAITEGKEKGPIIVEEAKR---QNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSS 217 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~a~~---~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~~ 217 (236)
++.+++.+..-....+.+.+++++ .+++++|.+.-.-..+-.. +.-.+++||+-||-...
T Consensus 48 Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------------vA~~t~~PVIgVP~~~~ 110 (182)
T 1u11_A 48 EIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGM-----------------CAAWTRLPVLGVPVESR 110 (182)
T ss_dssp TCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH-----------------HHHHCSSCEEEEEECCT
T ss_pred CCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHH-----------------HHhccCCCEEEeeCCCC
Confidence 788888888754435677777764 5689999887765555444 45688999999998765
Q ss_pred CCCc
Q 037436 218 KLGG 221 (236)
Q Consensus 218 ~~~~ 221 (236)
..+|
T Consensus 111 ~l~G 114 (182)
T 1u11_A 111 ALKG 114 (182)
T ss_dssp TTTT
T ss_pred CCCc
Confidence 4444
No 37
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=89.51 E-value=2.1 Score=33.30 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=47.3
Q ss_pred HHHHhhhhCCCceEEEEEEecCChHHHHHHHHHH---C-CCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCC
Q 037436 131 MKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKR---Q-NVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSS 206 (236)
Q Consensus 131 ~~~~~~~~~~~v~v~~~v~~G~~~~~~I~~~a~~---~-~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~ 206 (236)
+...++.. ++.+++.+..-....+.+.+++++ . +++++|.+.-.-..+-.. +.-.++
T Consensus 21 a~~~l~~~--gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpgv-----------------vA~~t~ 81 (159)
T 3rg8_A 21 IASELKTF--GIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGF-----------------VDGFVK 81 (159)
T ss_dssp HHHHHHHT--TCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHH-----------------HHHHSS
T ss_pred HHHHHHHc--CCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHH-----------------HHhccC
Confidence 34444433 788888888754435666666643 3 689999998766555544 455889
Q ss_pred CeEEEEeCCCCCC
Q 037436 207 RMTIAVRRKSSKL 219 (236)
Q Consensus 207 ~PVlvV~~~~~~~ 219 (236)
+||+-||-.+...
T Consensus 82 ~PVIgVP~~~~~l 94 (159)
T 3rg8_A 82 GATIACPPPSDSF 94 (159)
T ss_dssp SCEEECCCCCCGG
T ss_pred CCEEEeeCCCCCC
Confidence 9999999775433
No 38
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=88.80 E-value=3.4 Score=32.80 Aligned_cols=64 Identities=22% Similarity=0.302 Sum_probs=45.5
Q ss_pred CceEEEEEEecCChHHHHHHHHH---HCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCCC
Q 037436 141 GVQVEIAITEGKEKGPIIVEEAK---RQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSS 217 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~a~---~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~~ 217 (236)
++.+++.+..-....+.+.++++ +.+++++|.+.-.-..+-.. +.-.+++||+-||-...
T Consensus 40 Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------------vA~~t~~PVIgVP~~~~ 102 (183)
T 1o4v_A 40 GIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGM-----------------VASITHLPVIGVPVKTS 102 (183)
T ss_dssp TCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH-----------------HHHHCSSCEEEEEECCT
T ss_pred CCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHH-----------------HHhccCCCEEEeeCCCC
Confidence 78889888874433466666665 46789999887765555444 45578999999998765
Q ss_pred CCCc
Q 037436 218 KLGG 221 (236)
Q Consensus 218 ~~~~ 221 (236)
..+|
T Consensus 103 ~l~G 106 (183)
T 1o4v_A 103 TLNG 106 (183)
T ss_dssp TTTT
T ss_pred CCCc
Confidence 4443
No 39
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=88.68 E-value=2.5 Score=32.77 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=47.7
Q ss_pred HHHHhhhhCCCceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEE
Q 037436 131 MKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTI 210 (236)
Q Consensus 131 ~~~~~~~~~~~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVl 210 (236)
+...++.. ++.+++.+..-....+.+.+++++...+++|.+.-.-..+-.. +.-.+++||+
T Consensus 18 a~~~l~~~--gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpgv-----------------va~~t~~PVI 78 (157)
T 2ywx_A 18 AVNILKEF--GVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGV-----------------VASLTTKPVI 78 (157)
T ss_dssp HHHHHHHT--TCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHH-----------------HHTTCSSCEE
T ss_pred HHHHHHHc--CCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHHH-----------------HHhccCCCEE
Confidence 34444433 7888988887554468889999877679999988766655554 4457899999
Q ss_pred EEeC
Q 037436 211 AVRR 214 (236)
Q Consensus 211 vV~~ 214 (236)
-||-
T Consensus 79 gVP~ 82 (157)
T 2ywx_A 79 AVPV 82 (157)
T ss_dssp EEEE
T ss_pred EecC
Confidence 9998
No 40
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=88.32 E-value=2.6 Score=33.23 Aligned_cols=62 Identities=10% Similarity=0.163 Sum_probs=43.6
Q ss_pred CceEEEEEEecCChHHHHHHH---HHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCCC
Q 037436 141 GVQVEIAITEGKEKGPIIVEE---AKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSS 217 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~---a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~~ 217 (236)
++.+++.+..-....+.+.++ +++.+++++|.+.-.-..+-.. +.-.+++||+-||-...
T Consensus 34 gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------------vA~~t~~PVIgVP~~~~ 96 (174)
T 3lp6_A 34 DIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGM-----------------VAAATPLPVIGVPVPLG 96 (174)
T ss_dssp TCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHH-----------------HHHHCSSCEEEEEECCS
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHH-----------------HHhccCCCEEEeeCCCC
Confidence 788888888744324555555 5568899999987765555444 45688999999998754
Q ss_pred CC
Q 037436 218 KL 219 (236)
Q Consensus 218 ~~ 219 (236)
..
T Consensus 97 ~l 98 (174)
T 3lp6_A 97 RL 98 (174)
T ss_dssp SG
T ss_pred CC
Confidence 33
No 41
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=87.97 E-value=2.1 Score=38.91 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=74.1
Q ss_pred cCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChH
Q 037436 76 DSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKG 155 (236)
Q Consensus 76 D~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~ 155 (236)
|..-....||..|+..|.+.+..|+.|++.+ +.... .......-..+.|.++.+.++.. ++. +.+..|++ .
T Consensus 46 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~d-p~~~~---~~~~r~~Fl~~sL~~L~~~L~~~--G~~--L~v~~g~~-~ 116 (482)
T 2xry_A 46 DQRAEDNWALLFSRAIAKEANVPVVVVFCLT-DEFLE---AGIRQYEFMLKGLQELEVSLSRK--KIP--SFFLRGDP-G 116 (482)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTSCEEEEEEEC-TTGGG---SCHHHHHHHHHHHHHHHHHHHHT--TCC--EEEEESCH-H
T ss_pred CCCccccHHHHHHHHHHHHcCCcEEEEEEeC-hhhhc---cCHHHHHHHHHHHHHHHHHHHHc--CCc--EEEEeCCH-H
Confidence 5566666788888888766677899999998 33221 11112223345566666666543 554 44567888 7
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeC
Q 037436 156 PIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRR 214 (236)
Q Consensus 156 ~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~ 214 (236)
+.|.+.+++.+++.|+.-......... ....+.+...|++..+..
T Consensus 117 ~~l~~l~~~~~~~~V~~~~~~~~~~~~--------------~~~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 117 EKISRFVKDYNAGTLVTDFSPLRIKNQ--------------WIEKVISGISIPFFEVDA 161 (482)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSHHHHH--------------HHHHHHHHCCSCEEEECC
T ss_pred HHHHHHHHHcCCCEEEEecccchhHHH--------------HHHHHHHHcCCEEEEEeC
Confidence 999999999999999987543221111 234455555888887754
No 42
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=86.45 E-value=1.5 Score=40.41 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=64.3
Q ss_pred EEEEe--cCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEE
Q 037436 71 VMVVA--DSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAI 148 (236)
Q Consensus 71 ILV~v--D~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v 148 (236)
+|+=. |..-....||..|++.|...+..|+.|+|.+ |..... ........-..+.|.++.+.++.. .+...+
T Consensus 40 vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfild-p~~~~~-~~~~~r~~FL~~sL~dL~~~L~~l----G~~L~v 113 (506)
T 3umv_A 40 VVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALF-PRPFLL-SARRRQLGFLLRGLRRLAADAAAR----HLPFFL 113 (506)
T ss_dssp EEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECC-CTTCGG-GCCHHHHHHHHHHHHHHHHHHHHT----TCCEEE
T ss_pred EEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEecc-chhhcc-CCCHHHHHHHHHHHHHHHHHHHHc----CCceEE
Confidence 44443 6777777899999998877778899999998 432111 111122234456666677666633 345566
Q ss_pred EecCChHHHHHHHHHHCCCCEEEEc
Q 037436 149 TEGKEKGPIIVEEAKRQNVSLLVLG 173 (236)
Q Consensus 149 ~~G~~~~~~I~~~a~~~~~DLLVmG 173 (236)
..|++ .+. .+.+++.+++.|+..
T Consensus 114 ~~G~p-~~v-~~L~~~~~a~~V~~d 136 (506)
T 3umv_A 114 FTGGP-AEI-PALVQRLGASTLVAD 136 (506)
T ss_dssp ESSCT-THH-HHHHHHTTCSEEEEC
T ss_pred EecCh-HHH-HHHHHhcCCCEEEec
Confidence 78999 577 999999999999973
No 43
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=83.58 E-value=4.3 Score=36.36 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=60.3
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhcc-CCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEE
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQ-CQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVE 145 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~-~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 145 (236)
...+|+|++.+..+|..++..+..+... .+-+|+++||..... . . +.+..+.+++.|+.. ++.+.
T Consensus 12 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr-~---~--------s~~~~~~v~~~~~~l--gi~~~ 77 (433)
T 1ni5_A 12 TSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS-A---N--------ADAWVTHCENVCQQW--QVPLV 77 (433)
T ss_dssp TCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC-S---S--------HHHHHHHHHHHHHHT--TCCEE
T ss_pred CCCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC-c---c--------cHHHHHHHHHHHHHc--CCcEE
Confidence 3468999999999999888888887766 678999999976211 1 1 112233455556543 56555
Q ss_pred EEEEe----cCC--------hHHHHHHHHHHCCCCEEEEccCCCCchhh
Q 037436 146 IAITE----GKE--------KGPIIVEEAKRQNVSLLVLGQRRKSIVWT 182 (236)
Q Consensus 146 ~~v~~----G~~--------~~~~I~~~a~~~~~DLLVmG~~~~s~~~~ 182 (236)
+.-+. |.. +...+.+.+ .+++.|++|++.......
T Consensus 78 v~~~~~~~~~~~~e~~aR~~Ry~~l~~~a--~~~~~i~tgH~~dD~aEt 124 (433)
T 1ni5_A 78 VERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCET 124 (433)
T ss_dssp EECCCCCCSSSTTTTHHHHHHHHHHHHTC--CTTEEEECCCCHHHHHHH
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHHH--hhCCeEEeeccchHHHHH
Confidence 54332 111 112233333 248999999875433333
No 44
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=82.68 E-value=3 Score=38.60 Aligned_cols=129 Identities=8% Similarity=0.015 Sum_probs=77.9
Q ss_pred EEEEEe--cCCHhHHHHHHHHHHhhcc--CCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEE
Q 037436 70 KVMVVA--DSSLDAKGALEWALSHTVQ--CQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVE 145 (236)
Q Consensus 70 ~ILV~v--D~s~~s~~al~~A~~la~~--~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 145 (236)
.+|+=+ |..-....||..|+..+.. .+..|+.|++.+ +..............-..+.|..+.+.++.. |+.
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~d-p~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~--G~~-- 104 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILD-PGILDWMQVGANRWRFLQQTLEDLDNQLRKL--NSR-- 104 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEEC-TTGGGCTTSCHHHHHHHHHHHHHHHHHHHHT--TCC--
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEEC-chhhcccCCCHHHHHHHHHHHHHHHHHHHHC--CCe--
Confidence 435544 6666677788888887654 455699999998 3322111111122223445566666666543 444
Q ss_pred EEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 146 IAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 146 ~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
..+..|++ .+.|.+.+++.+++.|+.-..-. ..... .-......+....|++..+...
T Consensus 105 L~v~~g~~-~~~l~~l~~~~~~~~v~~~~~~~-p~~~~----------rd~~v~~~~~~~gi~~~~~~~~ 162 (543)
T 2wq7_A 105 LFVVRGKP-AEVFPRIFKSWRVEMLTFETDIE-PYSVT----------RDAAVQKLAKAEGVRVETHCSH 162 (543)
T ss_dssp CEEEESCH-HHHHHHHHHHTTEEEEEEECCCS-HHHHH----------HHHHHHHHHHHHTCEEEEECCS
T ss_pred EEEEeCCH-HHHHHHHHHHcCCCEEEEecCcC-HHHHH----------HHHHHHHHHHHcCCEEEEecCC
Confidence 44567888 79999999999999999875532 22211 1123345556668888877654
No 45
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=79.66 E-value=28 Score=29.61 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=78.5
Q ss_pred CEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEE
Q 037436 69 NKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAI 148 (236)
Q Consensus 69 ~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v 148 (236)
-+|||++.........++.|..+. .+..-|++++|.+... . ... . ++ ++.+.+.++.+ ++..-+.+
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt-~~~G~ltv~~i~p~~~-~--~~l----~---~q-l~~l~~~l~~r--~v~a~~~v 86 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDIT-YPKGSVKLLGLAGNTD-K--ENL----L---SQ-LPSISEGFQEE--GVFSSWTI 86 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH-TTTCEEEEEECC---C-T--TCH----H---HH-HHHHHHHHHHT--TCEEEEEE
T ss_pred CcEEEecCCchhhhhHHHHHHHhc-cCceeEEEEEEccCCC-c--cHH----H---HH-HHHHHHHHHhC--CceeEEEE
Confidence 379999988888899999998885 5678899999976221 1 100 1 11 25567777755 89988888
Q ss_pred EecCChHHHHHHHHHH-----CCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCCC
Q 037436 149 TEGKEKGPIIVEEAKR-----QNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSS 217 (236)
Q Consensus 149 ~~G~~~~~~I~~~a~~-----~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~~ 217 (236)
+..+....++...++. ..+..|+||......-+.- .-.+..+ +.+...-|++++....
T Consensus 87 i~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~~----------y~~~i~~-~~~~~~nVlil~~~~~ 149 (294)
T 3g40_A 87 IDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEE----------IREIIRK-ASMYRMGVLLFSKHPQ 149 (294)
T ss_dssp C-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHHH----------HHHHHHH-HHHTTCEEEEEECCTT
T ss_pred EecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhHH----------HHHHHHH-HHHhCceEEEEecCCc
Confidence 8755436777777766 4678999998765332221 1223333 3455888999986443
No 46
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=79.38 E-value=6 Score=32.84 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=49.2
Q ss_pred CCHhHHHHHHHHHHhhccCCC--EEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEE-----
Q 037436 77 SSLDAKGALEWALSHTVQCQD--TIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAIT----- 149 (236)
Q Consensus 77 ~s~~s~~al~~A~~la~~~~~--~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~----- 149 (236)
.++.+..|++.|.++..+ +. +|++|.+-+ + ..++.+.++..+ |..--+.+-
T Consensus 35 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~-~--------------~a~~~lr~ala~------GaD~vi~v~~d~~~ 92 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGV-K--------------QAAETLRTALAM------GADRAILVVAADDV 92 (252)
T ss_dssp ECHHHHHHHHHHHHHHTT-TSCSEEEEEEEES-G--------------GGHHHHHHHHHH------TCSEEEEEECCSST
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCC-h--------------hHHHHHHHHHhc------CCCEEEEEecChhh
Confidence 467889999999999876 65 888887754 1 012222222222 332222222
Q ss_pred -ecC---ChHHHHHHHHHHCCCCEEEEccCCC
Q 037436 150 -EGK---EKGPIIVEEAKRQNVSLLVLGQRRK 177 (236)
Q Consensus 150 -~G~---~~~~~I~~~a~~~~~DLLVmG~~~~ 177 (236)
.+. ..+..|.+.+++.++|+|++|....
T Consensus 93 ~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~ 124 (252)
T 1efp_B 93 QQDIEPLAVAKILAAVARAEGTELIIAGKQAI 124 (252)
T ss_dssp TCCCCHHHHHHHHHHHHHHHTCSEEEEESCCT
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 121 1245777888888999999998764
No 47
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=78.87 E-value=3.6 Score=33.34 Aligned_cols=87 Identities=14% Similarity=0.060 Sum_probs=56.9
Q ss_pred CCEEEEEecC-----CHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCc
Q 037436 68 GNKVMVVADS-----SLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGV 142 (236)
Q Consensus 68 ~~~ILV~vD~-----s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 142 (236)
|++|||.++. .+.+..+|..|.+++.+.+.+|++|-+-+. .. +.++++..+ |.
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~-~~---------------~~~~~~~~~------Ga 60 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTG-LK---------------EIEKQILPY------GV 60 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESC-CT---------------TTHHHHGGG------TC
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCC-HH---------------HHHHHHHhc------CC
Confidence 5679998875 577899999999999888888888877541 10 111112221 33
Q ss_pred eEEEEEEe----cC---ChHHHHHHHHHHCCCCEEEEccCC
Q 037436 143 QVEIAITE----GK---EKGPIIVEEAKRQNVSLLVLGQRR 176 (236)
Q Consensus 143 ~v~~~v~~----G~---~~~~~I~~~a~~~~~DLLVmG~~~ 176 (236)
.--+.+-. +. +....|.+.++++++|+|++|...
T Consensus 61 d~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 61 DKLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp SEEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred CEEEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 32222221 11 135688999999999999999754
No 48
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=77.83 E-value=2.9 Score=35.05 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=51.3
Q ss_pred EecCCHhHHHHHHHHHHhhccCCC--EEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEe-
Q 037436 74 VADSSLDAKGALEWALSHTVQCQD--TIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITE- 150 (236)
Q Consensus 74 ~vD~s~~s~~al~~A~~la~~~~~--~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~- 150 (236)
..-.++.+..|++.|.+++.+.+. +|++|.+-+ + ..++.+.++..+ |..--+.+-.
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~-~--------------~~~~~lr~ala~------GaD~vi~v~d~ 90 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGP-D--------------RVDESLRKCLAK------GADRAVRVWDD 90 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESC-G--------------GGHHHHHHHHHT------TCSEEEEECCG
T ss_pred CCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCc-h--------------hHHHHHHHHHhc------CCCEEEEEcCc
Confidence 444578899999999999877666 888887754 1 012222222221 3332222221
Q ss_pred ---cC---ChHHHHHHHHHHCCCCEEEEccCCC
Q 037436 151 ---GK---EKGPIIVEEAKRQNVSLLVLGQRRK 177 (236)
Q Consensus 151 ---G~---~~~~~I~~~a~~~~~DLLVmG~~~~ 177 (236)
+. ..+..|.+.+++.++|+|++|....
T Consensus 91 ~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~ 123 (264)
T 1o97_C 91 AAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSS 123 (264)
T ss_dssp GGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCT
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 11 1245778888888999999998764
No 49
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=77.19 E-value=6.4 Score=35.77 Aligned_cols=126 Identities=14% Similarity=0.043 Sum_probs=73.3
Q ss_pred EEEEEe--cCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCc-----hhHHHHHHHHHHHHHHHHHHHHhhhhCCCc
Q 037436 70 KVMVVA--DSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQV-----KETKGKKLYLRAYEKLHSMKSTCQLKKPGV 142 (236)
Q Consensus 70 ~ILV~v--D~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 142 (236)
.+|+=+ |..-....||..|++ .+..|+.|+|.+ +.... ..........-..+.|.++.+.++.. |+
T Consensus 7 ~~l~WfrrDLRl~DN~aL~~A~~----~~~~v~~vfi~d-p~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~--G~ 79 (489)
T 1np7_A 7 TVLVWFRNDLRLHDHEPLHRALK----SGLAITAVYCYD-PRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKV--GN 79 (489)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHH----TTSEEEEEEEEC-GGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred cEEEEeCCCCCcchHHHHHHHHh----cCCCEEEEEEEC-chhhcccccccCCCCHHHHHHHHHHHHHHHHHHHHC--CC
Confidence 344443 555666667777764 345788999988 32110 00111112233455566666666543 44
Q ss_pred eEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 143 QVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 143 ~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
. ..+..|++ .+.|.+.+++.+++.|+.-...... ..- . -......+....|++..+....
T Consensus 80 ~--L~v~~g~~-~~~l~~l~~~~~~~~V~~~~~~~~~-~~~---------r-d~~v~~~l~~~gi~~~~~~~~~ 139 (489)
T 1np7_A 80 K--LLVTTGLP-EQVIPQIAKQINAKTIYYHREVTQE-ELD---------V-ERNLVKQLTILGIEAKGYWGST 139 (489)
T ss_dssp C--EEEEESCH-HHHHHHHHHHTTEEEEEEECCCSHH-HHH---------H-HHHHHHHHHHHTCEEEEECCSS
T ss_pred c--EEEEECCH-HHHHHHHHHHcCCCEEEEecccCHH-HHH---------H-HHHHHHHHHhcCCeEEEecCCe
Confidence 4 45567888 7999999999999999988654322 111 1 1123444556678888776543
No 50
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=77.18 E-value=4.8 Score=36.63 Aligned_cols=119 Identities=10% Similarity=0.086 Sum_probs=69.2
Q ss_pred cCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChH
Q 037436 76 DSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKG 155 (236)
Q Consensus 76 D~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~ 155 (236)
|..-....||..|+.. ...|+.|++.+ +..............-..+.|..+.+.++.. |+. ..+..|++ .
T Consensus 12 DLRl~Dn~aL~~A~~~----~~~v~~vfi~d-p~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~--G~~--L~v~~g~~-~ 81 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQ----SAQLIGLFCLD-PQILQSADMAPARVAYLQGCLQELQQRYQQA--GSR--LLLLQGDP-Q 81 (484)
T ss_dssp CCCSSSCHHHHHHHHH----CSCEEEEEEEC-HHHHTCTTCCHHHHHHHHHHHHHHHHHHHHH--TSC--EEEEESCH-H
T ss_pred CCCcchhHHHHHHHhc----CCCEEEEEEEc-chhhcCCCCCHHHHHHHHHHHHHHHHHHHHC--CCe--EEEEeCCH-H
Confidence 4444555677777653 23688999987 2111000011111223345555666655543 444 44467888 7
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 156 PIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 156 ~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
+.|.+.+++.+++.|+.-..-... ..- . -......+....|++..+...
T Consensus 82 ~~l~~l~~~~~~~~v~~~~~~~p~-~~~---------r-d~~v~~~l~~~gi~~~~~~~~ 130 (484)
T 1owl_A 82 HLIPQLAQQLQAEAVYWNQDIEPY-GRD---------R-DGQVAAALKTAGIRAVQLWDQ 130 (484)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSHH-HHH---------H-HHHHHHHHHHTTCEEEEECCS
T ss_pred HHHHHHHHHcCCCEEEEeccCChh-HHH---------H-HHHHHHHHHHcCcEEEEecCC
Confidence 999999999999999997554322 111 1 123345556678998887643
No 51
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=76.89 E-value=5.7 Score=33.08 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=49.5
Q ss_pred CCHhHHHHHHHHHHhhccCCC--EEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEE-----
Q 037436 77 SSLDAKGALEWALSHTVQCQD--TIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAIT----- 149 (236)
Q Consensus 77 ~s~~s~~al~~A~~la~~~~~--~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~----- 149 (236)
.++.+..|++.|+++..+ +. +|++|.+-+ + ..++.+.++..+ |..--+.+-
T Consensus 38 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~-~--------------~a~~~lr~ala~------GaD~vi~v~~d~~~ 95 (255)
T 1efv_B 38 MNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGP-A--------------QCQETIRTALAM------GADRGIHVEVPPAE 95 (255)
T ss_dssp ECHHHHHHHHHHHHHHHT-TSCSEEEEEEEES-T--------------THHHHHHHHHHH------TCSEEEEEECCHHH
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCC-h--------------hHHHHHHHHHhc------CCCEEEEEecChhh
Confidence 467889999999999876 65 888887765 1 012222233222 333222222
Q ss_pred -ecC---ChHHHHHHHHHHCCCCEEEEccCCC
Q 037436 150 -EGK---EKGPIIVEEAKRQNVSLLVLGQRRK 177 (236)
Q Consensus 150 -~G~---~~~~~I~~~a~~~~~DLLVmG~~~~ 177 (236)
.+. ..+..|.+.+++.++|+|++|....
T Consensus 96 ~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~ 127 (255)
T 1efv_B 96 AERLGPLQVARVLAKLAEKEKVDLVLLGKQAI 127 (255)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTCSEEEEESCCT
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 121 1245778888888999999998764
No 52
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=75.49 E-value=1.6 Score=40.45 Aligned_cols=96 Identities=13% Similarity=0.118 Sum_probs=58.2
Q ss_pred cCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChH
Q 037436 76 DSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKG 155 (236)
Q Consensus 76 D~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~ 155 (236)
|..-....||..|+..+. .+..|+.|+|.+ |..............-..+.|.++.+.++.. .+......+..|++ .
T Consensus 13 DLRl~DN~AL~~A~~~~~-~g~~vl~vfi~d-p~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~-~~~G~~L~v~~G~~-~ 88 (538)
T 3tvs_A 13 GLRLHDNPALLAALADKD-QGIALIPVFIFD-GESAGTKNVGYNRMRFLLDSLQDIDDQLQAA-TDGRGRLLVFEGEP-A 88 (538)
T ss_dssp CCCSSSCHHHHTTTGGGT-TTCBCCEEEEEC-SSSSCSTTCCHHHHHHHHHHHHHHHHHGGGS-CSSSSCCEEEESCH-H
T ss_pred CcchhhhHHHHHHHHhCC-CCCCEEEEEecC-hhhhccCCCCHHHHHHHHHHHHHHHHHHHHh-hcCCCeEEEEeCCH-H
Confidence 444455567766665543 344899999998 4332111111122234456666677666521 00044556677998 7
Q ss_pred HHHHHHHHHCCCCEEEEccC
Q 037436 156 PIIVEEAKRQNVSLLVLGQR 175 (236)
Q Consensus 156 ~~I~~~a~~~~~DLLVmG~~ 175 (236)
+.|.+.+++.+++.|+....
T Consensus 89 ~vl~~L~~~~~a~~V~~n~~ 108 (538)
T 3tvs_A 89 YIFRRLHEQVRLHRICIEQD 108 (538)
T ss_dssp HHHHHHHHHHCEEEECEECC
T ss_pred HHHHHHHHHcCCCEEEEccC
Confidence 89999999999999987554
No 53
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=75.06 E-value=13 Score=31.98 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=57.0
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEE
Q 037436 68 GNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIA 147 (236)
Q Consensus 68 ~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 147 (236)
+.+|+|++.+..+|.-+|..+.......+..|.++|+.. .... + +..+. +.+.++. .++.+.+.
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDt-g~~~--~--------et~~~---v~~~~~~--~gi~l~v~ 109 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDT-RWKF--Q--------EMYRF---RDQMVEE--MGLDLITH 109 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECC-SCCC--H--------HHHHH---HHHHHHT--TTCCEEEE
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEEC-CCCC--H--------HHHHH---HHHHHHH--cCCCEEEE
Confidence 457999999999999888888777654456788899865 2111 1 11222 2333332 25555444
Q ss_pred EEe-----cCC-------------hHHHHHHHHHHCCCCEEEEccCCC
Q 037436 148 ITE-----GKE-------------KGPIIVEEAKRQNVSLLVLGQRRK 177 (236)
Q Consensus 148 v~~-----G~~-------------~~~~I~~~a~~~~~DLLVmG~~~~ 177 (236)
... |.. +...+.++++++++|.++.|.+..
T Consensus 110 ~~~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~D 157 (325)
T 1zun_A 110 INPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRD 157 (325)
T ss_dssp CC--------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTT
T ss_pred eCchHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 321 211 012466777788999999998764
No 54
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=72.90 E-value=10 Score=34.69 Aligned_cols=118 Identities=12% Similarity=0.110 Sum_probs=69.1
Q ss_pred cCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEe-cCCh
Q 037436 76 DSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITE-GKEK 154 (236)
Q Consensus 76 D~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~-G~~~ 154 (236)
|..-....||..|+.. +.|+.|+|.+ +..............-..+.|.++.+.++.. ++.+ .+.. |++
T Consensus 21 DLRl~DN~aL~~A~~~-----~~v~pvfi~d-p~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~--G~~L--~v~~~g~~- 89 (509)
T 1u3d_A 21 DLRVEDNPALAAAVRA-----GPVIALFVWA-PEEEGHYHPGRVSRWWLKNSLAQLDSSLRSL--GTCL--ITKRSTDS- 89 (509)
T ss_dssp CCCSTTCHHHHHHHHH-----SCEEEEEEEC-GGGGTTCCCCHHHHHHHHHHHHHHHHHHHHT--TCCE--EEEECSCH-
T ss_pred CCccchhHHHHHHHhC-----CCEEEEEEEC-chhcccCCcchHHHHHHHHHHHHHHHHHHHC--CCeE--EEEeCCCH-
Confidence 6666666788888764 2577888987 3221000000111113455666666666643 5554 4455 566
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
.+.|.+.+++.+++.|+..... ...... . -......+....|++..+...
T Consensus 90 ~~~l~~l~~~~~~~~V~~~~~~-~p~~~~---------r-d~~v~~~l~~~gi~~~~~~~~ 139 (509)
T 1u3d_A 90 VASLLDVVKSTGASQIFFNHLY-DPLSLV---------R-DHRAKDVLTAQGIAVRSFNAD 139 (509)
T ss_dssp HHHHHHHHHHHTCCEEEEECCC-SHHHHH---------H-HHHHHHHHHTTTCEEEEECCS
T ss_pred HHHHHHHHHHcCCCEEEEeccc-CHHHHH---------H-HHHHHHHHHHcCcEEEEECCC
Confidence 7899999999999999987542 222211 1 112345556678998887643
No 55
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=71.31 E-value=5.7 Score=35.73 Aligned_cols=117 Identities=12% Similarity=0.141 Sum_probs=65.9
Q ss_pred cCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhH-HHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCCh
Q 037436 76 DSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKET-KGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEK 154 (236)
Q Consensus 76 D~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~ 154 (236)
|..-....||..|++ .+..|+.|+|.+ |....... .......-..+.|.++.+.++.. |+. ..+..|++
T Consensus 10 DLRl~DN~aL~~A~~----~~~~v~~vfi~d-p~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~--G~~--L~v~~g~~- 79 (440)
T 2e0i_A 10 DLRLEDNTGLNYALS----ECDRVIPVFIAD-PRQLINNPYKSEFAVSFMINSLLELDDELRKK--GSR--LNVFFGEA- 79 (440)
T ss_dssp CCCSSSCHHHHHHHH----HSSEEEEEEEEC-HHHHSSCTTCCHHHHHHHHHHHHHHHHHHHTT--TCC--CEEEESCH-
T ss_pred CCccchhHHHHHHHh----cCCCEEEEEEeC-hhhhccCCcCCHHHHHHHHHHHHHHHHHHHHc--CCe--EEEEECCH-
Confidence 333344456766665 356899999998 22110000 11112223455566666666533 444 45567888
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
.+.|.+.++ +++.|+........ ..- .-......+....|++..+...
T Consensus 80 ~~~l~~l~~--~~~~v~~~~~~~~~-~~~----------rd~~v~~~l~~~gi~~~~~~~~ 127 (440)
T 2e0i_A 80 EKVVSRFFN--KVDAIYVNEDYTPF-SIS----------RDEKIRKVCEENGIEFKAYEDY 127 (440)
T ss_dssp HHHHHHHCT--TCSEEEEECCCSHH-HHH----------HHHHHHHHHHTTTCEEEEECCS
T ss_pred HHHHHHHHc--CCCEEEEecccChH-HHH----------HHHHHHHHHHHcCceEEEecCC
Confidence 678888887 99999986543221 111 1123345556668888887654
No 56
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=71.00 E-value=9.9 Score=31.54 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=40.3
Q ss_pred HHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC---------CCCCceeee
Q 037436 157 IIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS---------SKLGGYLIT 225 (236)
Q Consensus 157 ~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~---------~~~~~~li~ 225 (236)
.+++.+++.++|++|+.+.......- .-+++++....+|++|+.+.. ...-||+|-
T Consensus 55 ~~~~~~~~~~pDfvI~isPN~a~PGP-------------~~ARE~l~~~~iP~IvI~D~p~~K~kd~l~~~g~GYIiv 119 (283)
T 1qv9_A 55 MALDIAEDFEPDFIVYGGPNPAAPGP-------------SKAREMLADSEYPAVIIGDAPGLKVKDEMEEQGLGYILV 119 (283)
T ss_dssp HHHHHHHHHCCSEEEEECSCTTSHHH-------------HHHHHHHHTSSSCEEEEEEGGGGGGHHHHHHTTCEEEEE
T ss_pred HhhhhhhhcCCCEEEEECCCCCCCCc-------------hHHHHHHHhCCCCEEEEcCCcchhhHHHHHhcCCcEEEE
Confidence 44556689999999999876433322 267889999999999997643 145677664
No 57
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=70.71 E-value=13 Score=34.21 Aligned_cols=126 Identities=16% Similarity=0.084 Sum_probs=73.4
Q ss_pred CEEEEEe--cCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCch------hHHHHHHHHHHHHHHHHHHHHhhhhCC
Q 037436 69 NKVMVVA--DSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVK------ETKGKKLYLRAYEKLHSMKSTCQLKKP 140 (236)
Q Consensus 69 ~~ILV~v--D~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (236)
+.+|+=+ |..-....||..|++. +..|+.|++.+ +..... .........-..+.|..+.+.++..
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~----~~~v~~vfi~d-p~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~-- 112 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSS----SDTILPVYCLD-PRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKR-- 112 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT----CSEEEEEEEEC-GGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhc----CCcEEEEEEEC-chhhcccccccCCCCCHHHHHHHHHHHHHHHHHHHHc--
Confidence 3455544 6666666678777653 45799999998 321100 0011122223445566666666543
Q ss_pred CceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCC--CeEEEEeCC
Q 037436 141 GVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSS--RMTIAVRRK 215 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~--~PVlvV~~~ 215 (236)
++. +.+..|++ .+.|.+++++.+++.|+.-..-.. ...- . -......+.... |++..+...
T Consensus 113 G~~--L~v~~g~~-~~~l~~l~~~~~~~~V~~~~~~~p-~~~~---------r-d~~v~~~l~~~gv~i~~~~~~~~ 175 (525)
T 2j4d_A 113 GLN--LLIRSGKP-EEILPSLAKDFGARTVFAHKETCS-EEVD---------V-ERLVNQGLKRVGNSTKLELIWGS 175 (525)
T ss_dssp TCC--CEEEESCH-HHHHHHHHHHHTCSEEEEECCCSH-HHHH---------H-HHHHHHHHHTTCSSCEEEEECCS
T ss_pred CCe--EEEEeCCH-HHHHHHHHHHcCCCEEEEeccCCH-HHHH---------H-HHHHHHHHHhcCCceEEEEecCC
Confidence 444 44467888 799999999999999998755332 2111 1 112344455556 788777654
No 58
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=69.37 E-value=38 Score=26.35 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=28.4
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEe
Q 037436 68 GNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIA 106 (236)
Q Consensus 68 ~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~ 106 (236)
.++|+|++.+..+|..++.++.+. +.+|+.+|+..
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~ 37 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHY 37 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEES
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeC
Confidence 357999999999999888777554 36889999976
No 59
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=67.79 E-value=3.5 Score=38.19 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=56.8
Q ss_pred cCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchh---------HHHHHHHHHHHHHHHHHHHHhhhhCCCceEEE
Q 037436 76 DSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKE---------TKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEI 146 (236)
Q Consensus 76 D~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 146 (236)
|..-....||..|+. .+..|+.|+|.+ |...... ........-..+.|.++.+.++.. ....
T Consensus 14 DLRl~DN~AL~~A~~----~~~~vlpvfi~d-p~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L~~~----G~~L 84 (537)
T 3fy4_A 14 GLRVHDNPALEYASK----GSEFMYPVFVID-PHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKL----GSRL 84 (537)
T ss_dssp CCCSTTCHHHHHHHT----TCSCEEEEEEEC-HHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHT----TCCC
T ss_pred CcccchhHHHHHHHh----cCCCEEEEEEeC-hhhhcccccccccccccCCHHHHHHHHHHHHHHHHHHHHc----CCce
Confidence 565556667766654 356899999997 2211000 011112233455666666666633 3445
Q ss_pred EEEecCChHHHHHHHHHHCCCCEEEEccC
Q 037436 147 AITEGKEKGPIIVEEAKRQNVSLLVLGQR 175 (236)
Q Consensus 147 ~v~~G~~~~~~I~~~a~~~~~DLLVmG~~ 175 (236)
.+..|++ .+.|.+++++.+++.|+.-..
T Consensus 85 ~v~~G~~-~~vl~~L~~~~~~~~V~~n~~ 112 (537)
T 3fy4_A 85 LVFKGEP-GEVLVRCLQEWKVKRLCFEYD 112 (537)
T ss_dssp EEEESCH-HHHHHHHHTTSCEEEEEECCC
T ss_pred EEEECCH-HHHHHHHHHHcCCCEEEEecc
Confidence 5667888 789999999999999998765
No 60
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=66.67 E-value=14 Score=33.51 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=31.3
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEe
Q 037436 66 RYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIA 106 (236)
Q Consensus 66 ~~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~ 106 (236)
...++|+|++.+.-+|.-++.|+.+. +.+|+.+|+..
T Consensus 8 ~~~~KVvVA~SGGlDSSvll~~L~e~----G~eViavtvd~ 44 (455)
T 1k92_A 8 PVGQRIGIAFSGGLDTSAALLWMRQK----GAVPYAYTANL 44 (455)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEEC
T ss_pred cCCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEEc
Confidence 34578999999999999999888652 78999999976
No 61
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=66.61 E-value=10 Score=34.32 Aligned_cols=91 Identities=13% Similarity=0.113 Sum_probs=52.6
Q ss_pred HhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEE--ecCChHH
Q 037436 79 LDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAIT--EGKEKGP 156 (236)
Q Consensus 79 ~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~--~G~~~~~ 156 (236)
-....||..|+.. . .+.|+.|+|.+ |..............-..+.|.++.+.++.. |+.+.+..+ .|++ .+
T Consensus 13 l~DN~aL~~A~~~--~-~~~v~~vfi~d-p~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~--G~~L~v~~~~~~g~~-~~ 85 (471)
T 1dnp_A 13 LHDNLALAAACRN--S-SARVLALYIAT-PRQWATHNMSPRQAELINAQLNGLQIALAEK--GIPLLFREVDDFVAS-VE 85 (471)
T ss_dssp STTCHHHHHHSSS--T-TSEEEEEEEEC-HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHT--TCCEEEEECSSHHHH-HH
T ss_pred ccchHHHHHHHhC--C-CCCEEEEEEEC-chhhccCCCCHHHHHHHHHHHHHHHHHHHHC--CCeEEEEEccCCCCH-HH
Confidence 3344566666542 1 34899999998 2211000011111223345566666666543 555544322 6888 78
Q ss_pred HHHHHHHHCCCCEEEEccCC
Q 037436 157 IIVEEAKRQNVSLLVLGQRR 176 (236)
Q Consensus 157 ~I~~~a~~~~~DLLVmG~~~ 176 (236)
.|.+.+++.+++.|+....-
T Consensus 86 ~l~~l~~~~~~~~v~~~~~~ 105 (471)
T 1dnp_A 86 IVKQVCAENSVTHLFYNYQY 105 (471)
T ss_dssp HHHHHHHHHTCCEEEEECCC
T ss_pred HHHHHHHHcCCCEEEEeccc
Confidence 99999999999999986543
No 62
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=66.31 E-value=21 Score=31.23 Aligned_cols=98 Identities=11% Similarity=0.072 Sum_probs=57.3
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEE
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEI 146 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 146 (236)
...+|+|++.+..+|.-++..+.+ .+-+|+.||+....... .... -...+.++.+++.|+.. ++...+
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~-~~~~-----c~~~~d~~~a~~va~~l--GIp~~v 75 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKE----QGYDVIGIFMKNWDDTD-ENGV-----CTATEDYKDVVAVADQI--GIPYYS 75 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECCCCCC----------CHHHHHHHHHHHHHHHH--TCCEEE
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHH----cCCcEEEEEEECCCccc-cccc-----CCCHHHHHHHHHHHHHh--CCcEEE
Confidence 345899999999999877766544 37889999986521110 0000 00112233444444433 444443
Q ss_pred EEEe-----------------cC-----------ChHHHHHHHHHHCCCCEEEEccCC
Q 037436 147 AITE-----------------GK-----------EKGPIIVEEAKRQNVSLLVLGQRR 176 (236)
Q Consensus 147 ~v~~-----------------G~-----------~~~~~I~~~a~~~~~DLLVmG~~~ 176 (236)
.-.. |. .+...+.++|++.++|.|+.|+..
T Consensus 76 v~~~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a 133 (376)
T 2hma_A 76 VNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYA 133 (376)
T ss_dssp EECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSE
T ss_pred EeChHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcch
Confidence 3321 11 024567889999999999999853
No 63
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=64.97 E-value=9.5 Score=33.94 Aligned_cols=111 Identities=15% Similarity=0.080 Sum_probs=64.7
Q ss_pred cCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChH
Q 037436 76 DSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKG 155 (236)
Q Consensus 76 D~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~ 155 (236)
|..-....||..|+.. + .|+.|++.+ +.... . ......-..+.|.++.+.++.. |+. ..+..|++ .
T Consensus 11 DlRl~Dn~aL~~A~~~----~-~v~~vfi~d-~~~~~--~-~~~r~~fl~~sL~~l~~~L~~~--g~~--l~~~~g~~-~ 76 (420)
T 2j07_A 11 DLRLHDHPALLEALAR----G-PVVGLVVLD-PNNLK--T-TPRRRAWFLENVRALREAYRAR--GGA--LWVLEGLP-W 76 (420)
T ss_dssp CCCSTTCHHHHHHHTT----S-CEEEEEEEC-HHHHS--S-CHHHHHHHHHHHHHHHHHHHHT--TCC--EEEEESCH-H
T ss_pred CCCccccHHHHHHHhC----C-CEEEEEEEC-Ccccc--C-CHHHHHHHHHHHHHHHHHHHHC--CCe--EEEEeCCH-H
Confidence 4444555577666542 2 788999987 21110 1 1111223345566666666543 444 45567888 7
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeC
Q 037436 156 PIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRR 214 (236)
Q Consensus 156 ~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~ 214 (236)
+.|.+.+++.+++.|+.-..-... ..- ..+.|-..+.|++..+..
T Consensus 77 ~~l~~l~~~~~~~~v~~~~~~~~~-~~~-------------rd~~v~~~l~i~~~~~~~ 121 (420)
T 2j07_A 77 EKVPEAARRLKAKAVYALTSHTPY-GRY-------------RDGRVREALPVPLHLLPA 121 (420)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSHH-HHH-------------HHHHHHHHCSSCEEEECC
T ss_pred HHHHHHHHHcCCCEEEEecccChh-HHH-------------HHHHHHHHcCCeEEEeCC
Confidence 999999999999999997553322 211 123333334788877754
No 64
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=64.39 E-value=41 Score=26.37 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=27.4
Q ss_pred CEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEe
Q 037436 69 NKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIA 106 (236)
Q Consensus 69 ~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~ 106 (236)
.+|+|++.+..+|.-++..+..+. ..|.++|+..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~ 78 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDT 78 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEEC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeC
Confidence 489999999999998777776653 4688899876
No 65
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=64.02 E-value=43 Score=26.57 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=28.7
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEe
Q 037436 68 GNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIA 106 (236)
Q Consensus 68 ~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~ 106 (236)
+++++|++.+..+|.-++.++.+. +.+|+.+|+..
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~----~~~v~av~~~~ 36 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQD----YDDVHCITFDY 36 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEES
T ss_pred CCCEEEEecCcHHHHHHHHHHHHc----CCCEEEEEEEC
Confidence 368999999999999888887664 36888999876
No 66
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=63.89 E-value=12 Score=26.37 Aligned_cols=54 Identities=9% Similarity=0.045 Sum_probs=35.6
Q ss_pred HHHHHHHHHHCCCCEEEEccCCC-CchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRK-SIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~-s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
...|.+++++++++.||+|-..+ ++..+. +| +..-.+++.|-.. ++||..+-..
T Consensus 40 ~~~l~~li~e~~v~~iVvGlP~~mdGt~~~--~~----~~~~~f~~~L~~~-~lpV~~~DER 94 (98)
T 1iv0_A 40 VEALLDFVRREGLGKLVVGLPLRTDLKESA--QA----GKVLPLVEALRAR-GVEVELWDER 94 (98)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCCCCSSSCC--CS----STTHHHHHHHHHT-TCEEEEECCS
T ss_pred HHHHHHHHHHcCCCEEEEeeccCCCCCcCH--HH----HHHHHHHHHHhcC-CCCEEEECCC
Confidence 57899999999999999996533 222111 00 0123456677666 8999988654
No 67
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=59.67 E-value=57 Score=28.48 Aligned_cols=98 Identities=15% Similarity=0.129 Sum_probs=58.1
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEE
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEI 146 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 146 (236)
...+|+|++.+..+|.-++..+.+ .+-+|+.||+....... .... -...+.++.+++.|+.. ++...+
T Consensus 16 ~~~kVvVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~-~~~~-----~~s~~d~~~a~~va~~L--GIp~~v 83 (380)
T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQQ----QGYQVEGLFMKNWEEDD-GEEY-----CTAAADLADAQAVCDKL--GIELHT 83 (380)
T ss_dssp -CCEEEEECCSCSTTHHHHHHHHT----TCCEEEEEEEECCCCCS-HHHH-----HHHHHHHHHHHHHHHHH--TCCEEE
T ss_pred CCCEEEEEEEChHHHHHHHHHHHH----cCCeEEEEEEEcCcccc-ccCC-----CCCHHHHHHHHHHHHHc--CCcEEE
Confidence 456899999999888866655543 37899999986411110 0000 01122344555555543 555444
Q ss_pred EEEe-----------------cC-----------ChHHHHHHHHHH-CCCCEEEEccCC
Q 037436 147 AITE-----------------GK-----------EKGPIIVEEAKR-QNVSLLVLGQRR 176 (236)
Q Consensus 147 ~v~~-----------------G~-----------~~~~~I~~~a~~-~~~DLLVmG~~~ 176 (236)
.-.. |. .+...+.++|++ .++|.|+.|+..
T Consensus 84 vd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a 142 (380)
T 2der_A 84 VNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYV 142 (380)
T ss_dssp EECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSC
T ss_pred EeCcHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEcccc
Confidence 4332 11 023567788888 999999999754
No 68
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=57.96 E-value=36 Score=30.47 Aligned_cols=58 Identities=12% Similarity=0.140 Sum_probs=39.0
Q ss_pred CceEEEEEEecCChHHHHHHHH---HHCCC-CEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 141 GVQVEIAITEGKEKGPIIVEEA---KRQNV-SLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~a---~~~~~-DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
++.+++.+..-....+.+.+++ +..++ +++|.+.-.-..+-+. +.-.+++||+-||..
T Consensus 292 gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgv-----------------va~~t~~PVIgvP~~ 353 (425)
T 2h31_A 292 GIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPV-----------------MSGNTAYPVISCPPL 353 (425)
T ss_dssp TCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHH-----------------HHHHCSSCEEECCCC
T ss_pred CCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhH-----------------HhccCCCCEEEeeCc
Confidence 7788888876443234444444 45667 6888887655555444 455789999999974
No 69
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=56.64 E-value=35 Score=23.27 Aligned_cols=48 Identities=15% Similarity=0.085 Sum_probs=31.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
+...++.+++..+|+|++...-... .++ .+.+.+-...++|++++-..
T Consensus 35 ~~~al~~~~~~~~dlii~D~~~p~~-~g~------------~~~~~lr~~~~~~ii~~t~~ 82 (120)
T 3f6p_A 35 GNEAVEMVEELQPDLILLDIMLPNK-DGV------------EVCREVRKKYDMPIIMLTAK 82 (120)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSTTT-HHH------------HHHHHHHTTCCSCEEEEEES
T ss_pred HHHHHHHHhhCCCCEEEEeCCCCCC-CHH------------HHHHHHHhcCCCCEEEEECC
Confidence 5667788888999999998763322 121 13344444557898888654
No 70
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=56.09 E-value=56 Score=23.80 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=32.4
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
+...++.+++..+|+||+...-... .++ .+.+.+-...++|++++-..
T Consensus 60 ~~~al~~l~~~~~dlvilD~~l~~~-~g~------------~l~~~lr~~~~~~ii~~s~~ 107 (164)
T 3t8y_A 60 GLEAVEKAIELKPDVITMDIEMPNL-NGI------------EALKLIMKKAPTRVIMVSSL 107 (164)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCSSS-CHH------------HHHHHHHHHSCCEEEEEESS
T ss_pred HHHHHHHhccCCCCEEEEeCCCCCC-CHH------------HHHHHHHhcCCceEEEEecC
Confidence 4667777788899999999764321 111 24456666677999988654
No 71
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=55.90 E-value=19 Score=25.79 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=36.6
Q ss_pred HHHHHhhhhCCCceEEEEEEe-cCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCe
Q 037436 130 SMKSTCQLKKPGVQVEIAITE-GKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRM 208 (236)
Q Consensus 130 ~~~~~~~~~~~~v~v~~~v~~-G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~P 208 (236)
.+++.++.. ++++++.... +.. .. .+ .++|+|++|..-+..+..+ +.......+|
T Consensus 25 km~~~a~~~--gi~v~i~a~~~~~~--~~---~~--~~~DvvLLgPQV~y~~~~i---------------k~~~~~~~ip 80 (108)
T 3nbm_A 25 AINEGANLT--EVRVIANSGAYGAH--YD---IM--GVYDLIILAPQVRSYYREM---------------KVDAERLGIQ 80 (108)
T ss_dssp HHHHHHHHH--TCSEEEEEEETTSC--TT---TG--GGCSEEEECGGGGGGHHHH---------------HHHHTTTTCE
T ss_pred HHHHHHHHC--CCceEEEEcchHHH--Hh---hc--cCCCEEEEChHHHHHHHHH---------------HHHhhhcCCc
Confidence 344444444 6777665432 222 11 22 4589999998765554443 4555566799
Q ss_pred EEEEeCC
Q 037436 209 TIAVRRK 215 (236)
Q Consensus 209 VlvV~~~ 215 (236)
|.+++..
T Consensus 81 V~vI~~~ 87 (108)
T 3nbm_A 81 IVATRGM 87 (108)
T ss_dssp EEECCHH
T ss_pred EEEeCHH
Confidence 9988753
No 72
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=54.31 E-value=69 Score=28.20 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=29.1
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEe
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIA 106 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~ 106 (236)
...+++|++.+..+|.-++..+.. .+.+++.+|+..
T Consensus 186 ~~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~ 221 (413)
T 2c5s_A 186 VGGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHS 221 (413)
T ss_dssp TTEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEEC
T ss_pred CCCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeC
Confidence 357899999999999887776654 378999999975
No 73
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=52.87 E-value=68 Score=28.43 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=29.5
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEe
Q 037436 68 GNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIA 106 (236)
Q Consensus 68 ~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~ 106 (236)
.++|+|++.+.-+|.-++.|+.+. +.+|+.+|+..
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd~ 39 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLANI 39 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEES
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEEC
Confidence 468999999999999888887653 67899999976
No 74
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=51.97 E-value=89 Score=24.89 Aligned_cols=100 Identities=11% Similarity=0.112 Sum_probs=54.6
Q ss_pred CCCCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceE
Q 037436 65 ERYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQV 144 (236)
Q Consensus 65 ~~~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 144 (236)
.|...+|.|-+.++.....++-.++.- .....+|.+|-... +... . .+.++.. ++.+
T Consensus 4 ~m~~~ri~vl~SG~gsnl~all~~~~~-~~l~~~I~~Visn~-~~a~-~------------------l~~A~~~--gIp~ 60 (209)
T 4ds3_A 4 SMKRNRVVIFISGGGSNMEALIRAAQA-PGFPAEIVAVFSDK-AEAG-G------------------LAKAEAA--GIAT 60 (209)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHHTS-TTCSEEEEEEEESC-TTCT-H------------------HHHHHHT--TCCE
T ss_pred cCCCccEEEEEECCcHHHHHHHHHHHc-CCCCcEEEEEEECC-cccH-H------------------HHHHHHc--CCCE
Confidence 455568999999877776666666532 12234555554432 2111 0 1223322 5554
Q ss_pred EEEEEec-CCh---HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhc
Q 037436 145 EIAITEG-KEK---GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRW 187 (236)
Q Consensus 145 ~~~v~~G-~~~---~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~ 187 (236)
...-... ..+ .+.+++..++.++|++|+....+-....+|..|
T Consensus 61 ~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~ 107 (209)
T 4ds3_A 61 QVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYMRLLSGRFIAPY 107 (209)
T ss_dssp EECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCCSCCCHHHHGGG
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccccCcCHHHHhhc
Confidence 3321111 111 268899999999999999987654444455555
No 75
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=51.88 E-value=96 Score=25.25 Aligned_cols=38 Identities=8% Similarity=-0.016 Sum_probs=29.9
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEe
Q 037436 68 GNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIA 106 (236)
Q Consensus 68 ~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~ 106 (236)
+.+|+|++.+..+|.-.|..+..+... +..+.++|+..
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDt 78 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDT 78 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecC
Confidence 457999999999999888877776544 45788888855
No 76
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=50.73 E-value=51 Score=23.13 Aligned_cols=48 Identities=8% Similarity=0.130 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHH---hCCCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQ---NSSRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~---~s~~PVlvV~~~ 215 (236)
+...++.+++..+|+||+...-... .++ .+.+.+-+ ...+|++++-..
T Consensus 40 ~~~a~~~l~~~~~dlii~D~~l~~~-~g~------------~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 40 GAKALYQVQQAKYDLIILDIGLPIA-NGF------------EVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp HHHHHHHHTTCCCSEEEECTTCGGG-CHH------------HHHHHHHSSSTTTTCCEEEEETT
T ss_pred HHHHHHHhhcCCCCEEEEeCCCCCC-CHH------------HHHHHHHhcccccCCCEEEEeCC
Confidence 5677788888999999998763211 111 13344433 235889988754
No 77
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=48.86 E-value=19 Score=26.98 Aligned_cols=55 Identities=9% Similarity=-0.073 Sum_probs=35.8
Q ss_pred HHHHHHHHHHCCCCEEEEccCCC-CchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRK-SIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~-s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
...|.+++++++++.||+|-..+ ++..+.... ..-.+++.|-...++||..+-..
T Consensus 42 ~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~------~~~~f~~~L~~~~~lpV~~~DER 97 (138)
T 1nu0_A 42 WNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTA------RARKFANRIHGRFGVEVKLHDER 97 (138)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHH------HHHHHHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCcCcCHHHH------HHHHHHHHHHHHhCCCEEEEcCC
Confidence 68999999999999999996532 121110000 12235566666668999999654
No 78
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=47.01 E-value=14 Score=28.07 Aligned_cols=56 Identities=13% Similarity=-0.031 Sum_probs=35.5
Q ss_pred HHHHHHHHHHCCCCEEEEccCCC-CchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRK-SIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~-s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
...|.+.+++++++.||+|..-. ++..... +. -.-.++..+....++||..|-...
T Consensus 44 ~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~--~~----~ar~f~~~L~~~~~lpV~~vDEr~ 100 (150)
T 1vhx_A 44 LSRLSELIKDYTIDKIVLGFPKNMNGTVGPR--GE----ASQTFAKVLETTYNVPVVLWDERL 100 (150)
T ss_dssp HHHHHHHHTTSEEEEEEEECCCCBTTBCCHH--HH----HHHHHHHHHHHHHCSCEEEECCSS
T ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcchhHH--HH----HHHHHHHHHHHhhCCCEEEecCCC
Confidence 78999999999999999995422 1111110 00 112345566666689999986653
No 79
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=46.96 E-value=1.2e+02 Score=26.56 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=28.8
Q ss_pred CEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEe
Q 037436 69 NKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIA 106 (236)
Q Consensus 69 ~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~ 106 (236)
++|+|++.+..+|.-++.|+... .+.+|+++|+..
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~---~g~~V~av~vd~ 35 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET---YRAEVIAFTADI 35 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HTCEEEEEEEES
T ss_pred CcEEEEEeChHHHHHHHHHHHHh---hCCcEEEEEEeC
Confidence 47999999999999888887643 367899999976
No 80
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=45.69 E-value=1.4e+02 Score=27.01 Aligned_cols=35 Identities=9% Similarity=0.108 Sum_probs=28.8
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEe
Q 037436 68 GNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIA 106 (236)
Q Consensus 68 ~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~ 106 (236)
..+|+|++.+..+|.-++..+.+. +.+|+++|+..
T Consensus 209 ~~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd~ 243 (503)
T 2ywb_A 209 KDRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVDH 243 (503)
T ss_dssp TSEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEEC
T ss_pred CccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEeC
Confidence 368999999999998777666554 68999999865
No 81
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=45.66 E-value=95 Score=25.72 Aligned_cols=138 Identities=6% Similarity=-0.015 Sum_probs=87.9
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCC----chhHHHHHHHHHHHHHHHHHHHHhhhhCCCc
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQ----VKETKGKKLYLRAYEKLHSMKSTCQLKKPGV 142 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 142 (236)
.....=|+..+.-.....+..++.+|++.+-.| .-|.-...... ...-..+++.......+-.++..|+.. +.
T Consensus 27 ~VtSANIACGfHAGDp~~M~~tv~lA~~~gV~I-GAHPgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~~--G~ 103 (255)
T 1v6t_A 27 YITSANVACGWHAGDPLVMRKTVRLAKENDVQV-GAHPGYPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKAE--GL 103 (255)
T ss_dssp TCSEEEEECSSSSCCHHHHHHHHHHHHHTTCEE-EEECCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred HhhhhhhhccccCCCHHHHHHHHHHHHHcCCeE-ecCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--CC
Confidence 445566777776667778889999998876544 45665422221 112334555555566666777777754 66
Q ss_pred eEEEEEEec---------CChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEe
Q 037436 143 QVEIAITEG---------KEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVR 213 (236)
Q Consensus 143 ~v~~~v~~G---------~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~ 213 (236)
++...=-.| ...+.+|++.++..+.+|+++|. -||...+..+...+|++.--
T Consensus 104 ~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l-------------------~gs~~~~~A~~~Gl~~~~E~ 164 (255)
T 1v6t_A 104 ELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTL-------------------SNSRVADIAEEMGLKVAHEV 164 (255)
T ss_dssp CEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEE-------------------TTCHHHHHHHHHTCCEEEEE
T ss_pred EeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEec-------------------CChHHHHHHHHcCCcEEEEE
Confidence 666554334 22478999999999999999993 35556667777888877543
Q ss_pred --CCCCCCCceeeec
Q 037436 214 --RKSSKLGGYLITT 226 (236)
Q Consensus 214 --~~~~~~~~~li~t 226 (236)
+..=..+|-|++.
T Consensus 165 FADR~Y~~dG~LvpR 179 (255)
T 1v6t_A 165 FADRAYNPDGTLVPR 179 (255)
T ss_dssp CTTBCBCTTSCBCC-
T ss_pred eeccccCCCCCEecC
Confidence 2333345666654
No 82
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=45.36 E-value=21 Score=27.95 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=28.6
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEE
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYV 104 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV 104 (236)
|+++|++++-++..+..+++..-.+. +.+.+|.++-.
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~-~~g~~V~vv~T 37 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELK-QHFDEVNILFS 37 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHT-TTSSCEEEEEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHH-HCCCEEEEEEc
Confidence 57899999999999998888877764 44777766543
No 83
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=44.53 E-value=1.2e+02 Score=24.23 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=52.5
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEE
Q 037436 68 GNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIA 147 (236)
Q Consensus 68 ~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 147 (236)
.++|.|-+.++.....++-.++.- ...+.+|.+|-... +... . .+.++.. ++.+...
T Consensus 8 ~~ri~vl~SG~gsnl~all~~~~~-~~~~~~I~~Vis~~-~~a~-~------------------l~~A~~~--gIp~~~~ 64 (215)
T 3kcq_A 8 ELRVGVLISGRGSNLEALAKAFST-EESSVVISCVISNN-AEAR-G------------------LLIAQSY--GIPTFVV 64 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHHTCC-C-CSEEEEEEEESC-TTCT-H------------------HHHHHHT--TCCEEEC
T ss_pred CCEEEEEEECCcHHHHHHHHHHHc-CCCCcEEEEEEeCC-cchH-H------------------HHHHHHc--CCCEEEe
Confidence 457988888876666666555421 11234555444322 2111 0 1222322 5554332
Q ss_pred EEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhc
Q 037436 148 ITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRW 187 (236)
Q Consensus 148 v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~ 187 (236)
-...-. .+.+++..++.++|++|+....+=....+|..|
T Consensus 65 ~~~~~~-~~~~~~~L~~~~~Dlivlagy~~IL~~~~l~~~ 103 (215)
T 3kcq_A 65 KRKPLD-IEHISTVLREHDVDLVCLAGFMSILPEKFVTDW 103 (215)
T ss_dssp CBTTBC-HHHHHHHHHHTTCSEEEESSCCSCCCHHHHHHT
T ss_pred CcccCC-hHHHHHHHHHhCCCEEEEeCCceEeCHHHHhhc
Confidence 111112 478999999999999999987654444455555
No 84
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=44.16 E-value=82 Score=22.24 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~~ 216 (236)
....++.+++..+|+||+...-... .++ .+.+.+-+.. .+|++++-...
T Consensus 55 ~~~al~~l~~~~~dlii~D~~l~~~-~g~------------~~~~~l~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 55 GQEAIQLLEKESVDIAILDVEMPVK-TGL------------EVLEWIRSEKLETKVVVVTTFK 104 (150)
T ss_dssp HHHHHHHHTTSCCSEEEECSSCSSS-CHH------------HHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHHHhhccCCCEEEEeCCCCCC-cHH------------HHHHHHHHhCCCCeEEEEeCCC
Confidence 5677888888999999999764321 111 1334444433 58998887653
No 85
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=44.09 E-value=1.3e+02 Score=27.40 Aligned_cols=88 Identities=7% Similarity=0.021 Sum_probs=54.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEe---cCChHHHHHHHH-HHCCCCEEEEccCCCCchhhhh
Q 037436 109 SKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITE---GKEKGPIIVEEA-KRQNVSLLVLGQRRKSIVWTLM 184 (236)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~---G~~~~~~I~~~a-~~~~~DLLVmG~~~~s~~~~l~ 184 (236)
...++++..++..++++++++.+.+-. .+.+++.... .......+.+.+ +..++|.||+=....+.-
T Consensus 16 q~lyg~~~~~~v~~~~~~~~~~l~~~~-----~l~~~vv~~g~v~t~~~~~~~~~~~n~~~~vdgvi~~~~TFs~a---- 86 (500)
T 4f2d_A 16 QHLYGPETLRQVTQHAEHVVNALNTEA-----KLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPA---- 86 (500)
T ss_dssp CSSSCTTHHHHHHHHHHHHHHHHHHHT-----CCSSEEEECCCBCSHHHHHHHHHHHHHCTTEEEEEEECCSCCCT----
T ss_pred ccccCHHHHHHHHHHHHHHHHHhcccc-----CCCeEEEecCcCCCHHHHHHHHHHhccccCCcEEEEeCCcCccH----
Confidence 333566777778888888877776631 2333333221 111134555555 566899999887765433
Q ss_pred hhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 185 NRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 185 ~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
...-.+++...+|||+..-+.
T Consensus 87 -----------~~~i~~l~~l~~PvL~~~~q~ 107 (500)
T 4f2d_A 87 -----------KMWINGLTMLNKPLLQFHTQF 107 (500)
T ss_dssp -----------HHHHHHHHHCCSCEEEEECCS
T ss_pred -----------HHHHHHHHhcCCCEEEEeCCC
Confidence 233566788999999987543
No 86
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=43.63 E-value=79 Score=22.06 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=30.6
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHH---hCCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQ---NSSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~---~s~~PVlvV~~~~ 216 (236)
....++.+++..+|+||+...-... .++ .+.+.+-+ ...+|++++-...
T Consensus 41 ~~~a~~~l~~~~~dlii~d~~l~~~-~g~------------~~~~~l~~~~~~~~~pii~ls~~~ 92 (147)
T 2zay_A 41 AIEAVPVAVKTHPHLIITEANMPKI-SGM------------DLFNSLKKNPQTASIPVIALSGRA 92 (147)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCSSS-CHH------------HHHHHHHTSTTTTTSCEEEEESSC
T ss_pred HHHHHHHHHcCCCCEEEEcCCCCCC-CHH------------HHHHHHHcCcccCCCCEEEEeCCC
Confidence 4666777778899999999764321 111 13344443 3468999887653
No 87
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=42.55 E-value=73 Score=21.17 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
+...++..++..+|+|++...-... .++ .+.+.+-+..++|++++-...
T Consensus 34 ~~~a~~~~~~~~~dlvl~D~~l~~~-~g~------------~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 34 GREALEQFEAEQPDIIILDLMLPEI-DGL------------EVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCSSS-CHH------------HHHHHHHHHCCCCEEEEESCC
T ss_pred HHHHHHHHHhCCCCEEEEeccCCCC-CHH------------HHHHHHHhCCCCCEEEEecCC
Confidence 4556667777889999998753221 111 133444445678999886543
No 88
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=42.31 E-value=1.3e+02 Score=23.99 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=56.3
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEE
Q 037436 68 GNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIA 147 (236)
Q Consensus 68 ~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~ 147 (236)
+.||.|-+.++-..-.+|-.+..- .....+|.+|-... +. . ...+.++. .++.+.+.
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~-~~l~~eI~~Visn~-~~-a------------------~v~~~A~~--~gIp~~~~ 58 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKA-GQLPCEVALLITDK-PG-A------------------KVVERVKV--HEIPVCAL 58 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHT-TCCSSEEEEEEESC-SS-S------------------HHHHHHHT--TTCCEEEC
T ss_pred CCEEEEEEeCCchHHHHHHHHHHc-CCCCcEEEEEEECC-CC-c------------------HHHHHHHH--cCCCEEEe
Confidence 468888888876666666666543 23346776655533 11 0 13344442 25655332
Q ss_pred EEec-CCh---HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhcc
Q 037436 148 ITEG-KEK---GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWS 188 (236)
Q Consensus 148 v~~G-~~~---~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~ 188 (236)
-... ..+ .+.+++..++.++|++|+...++=....+|..|.
T Consensus 59 ~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~Il~~~~l~~~~ 103 (211)
T 3p9x_A 59 DPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYMRLVGPTLLGAYE 103 (211)
T ss_dssp CGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCCSCCCHHHHHHHT
T ss_pred ChhhcCchhhhHHHHHHHHHhcCCCEEEEeCchhhcCHHHHhhcc
Confidence 1111 111 2588999999999999999876544445555553
No 89
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=42.07 E-value=89 Score=22.04 Aligned_cols=49 Identities=12% Similarity=0.092 Sum_probs=30.8
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~~ 216 (236)
....++.+++..+|+||+...-... .++ .+.+.+-+.. .+|++++-...
T Consensus 50 ~~~a~~~l~~~~~dlii~d~~l~~~-~g~------------~~~~~l~~~~~~~~ii~~s~~~ 99 (152)
T 3eul_A 50 GAAALELIKAHLPDVALLDYRMPGM-DGA------------QVAAAVRSYELPTRVLLISAHD 99 (152)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCSSS-CHH------------HHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCC-CHH------------HHHHHHHhcCCCCeEEEEEccC
Confidence 5677778888899999999764321 111 1334444443 48888887553
No 90
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=42.04 E-value=86 Score=21.86 Aligned_cols=61 Identities=8% Similarity=0.085 Sum_probs=32.7
Q ss_pred HHHHhhhhCCCceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEE
Q 037436 131 MKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTI 210 (236)
Q Consensus 131 ~~~~~~~~~~~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVl 210 (236)
+++.+... ++++++....-.. +.+. ..++|+|+.+..-.....++ +......++||+
T Consensus 24 l~~~~~~~--gi~~~i~~~~~~~----~~~~--~~~~D~Ii~t~~l~~~~~~~---------------~~~~~~~~~pv~ 80 (109)
T 2l2q_A 24 IEKYAKSK--NINATIEAIAETR----LSEV--VDRFDVVLLAPQSRFNKKRL---------------EEITKPKGIPIE 80 (109)
T ss_dssp HHHHHHHH--TCSEEEEEECSTT----HHHH--TTTCSEEEECSCCSSHHHHH---------------HHHHHHHTCCEE
T ss_pred HHHHHHHC--CCCeEEEEecHHH----HHhh--cCCCCEEEECCccHHHHHHH---------------HHHhcccCCCEE
Confidence 44444433 5666554333222 2333 25799999997644333322 333344578888
Q ss_pred EEeC
Q 037436 211 AVRR 214 (236)
Q Consensus 211 vV~~ 214 (236)
++..
T Consensus 81 ~I~~ 84 (109)
T 2l2q_A 81 IINT 84 (109)
T ss_dssp ECCH
T ss_pred EECh
Confidence 8764
No 91
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=41.63 E-value=77 Score=21.22 Aligned_cols=49 Identities=22% Similarity=0.149 Sum_probs=30.7
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
+...++.++...+|+|++...-... .++ .+.+.+-+..++|++++....
T Consensus 35 ~~~~~~~~~~~~~dlvi~d~~l~~~-~g~------------~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 35 GAGLREIMQNQSVDLILLDINLPDE-NGL------------MLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSSS-CHH------------HHHHHHHTTCCCEEEEEESSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCC-ChH------------HHHHHHHhcCCCCEEEEECCC
Confidence 4667778888899999998753221 111 133444444568998886543
No 92
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=40.86 E-value=94 Score=21.98 Aligned_cols=49 Identities=10% Similarity=0.054 Sum_probs=30.7
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh-CCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN-SSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~-s~~PVlvV~~~~ 216 (236)
....++.+++..+|+||+...-... .++ .+.+.+-.. ..+|++++-...
T Consensus 47 ~~~a~~~l~~~~~dlvi~D~~l~~~-~g~------------~~~~~l~~~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 47 ATQALQLLASREVDLVISAAHLPQM-DGP------------TLLARIHQQYPSTTRILLTGDP 96 (153)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSSS-CHH------------HHHHHHHHHCTTSEEEEECCCC
T ss_pred HHHHHHHHHcCCCCEEEEeCCCCcC-cHH------------HHHHHHHhHCCCCeEEEEECCC
Confidence 4667777888999999998764321 111 133444443 358998887643
No 93
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=40.86 E-value=1.1e+02 Score=25.40 Aligned_cols=136 Identities=8% Similarity=0.075 Sum_probs=83.7
Q ss_pred CEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCC----chhHHHHHHHHHHHHHHHHHHHHhhhhCCCceE
Q 037436 69 NKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQ----VKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQV 144 (236)
Q Consensus 69 ~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v 144 (236)
...=|+..+.-.....+..++.+|++.+-.| .-|.-...... ...-..+++.......+-.++..|+.. +.++
T Consensus 24 tSANIACGfHAGDp~~M~~Tv~lA~~~gV~I-GAHPgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~~--G~~l 100 (252)
T 1xw8_A 24 SSANIACGFHAGDAQIMQACVREAIKNGVAI-GAHPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQ--GGVM 100 (252)
T ss_dssp SEEEEECSSSSCCHHHHHHHHHHHHHHTCEE-EEECCCC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHT--TCCE
T ss_pred hhHHHhhcccCCCHHHHHHHHHHHHHcCCee-ecCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--CCEe
Confidence 3445566665556677888888888766443 34554412111 112334555555556666777777754 6776
Q ss_pred EEEEEec---------CChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEe--
Q 037436 145 EIAITEG---------KEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVR-- 213 (236)
Q Consensus 145 ~~~v~~G---------~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~-- 213 (236)
...=-.| ...+.+|++.++..+.+|+++| +-||...+..+...+|++.--
T Consensus 101 ~hVKPHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~-------------------l~gs~~~~~A~~~Gl~~~~E~FA 161 (252)
T 1xw8_A 101 RHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVG-------------------LAGSELIRAGKQYGLTTREEVFA 161 (252)
T ss_dssp EEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEE-------------------ETTSHHHHHHHHTTCCEEEEECT
T ss_pred EEeCcCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEe-------------------cCChHHHHHHHHcCCcEEEEEee
Confidence 6554334 2247899999999999999999 335566777788888887543
Q ss_pred CCCCCCCceeeec
Q 037436 214 RKSSKLGGYLITT 226 (236)
Q Consensus 214 ~~~~~~~~~li~t 226 (236)
+..-..+|-|++.
T Consensus 162 DR~Y~~dG~LvpR 174 (252)
T 1xw8_A 162 DRGYQADGSLVPR 174 (252)
T ss_dssp TSCBCTTSSBCCT
T ss_pred ccccCCCCCEecc
Confidence 3333345656654
No 94
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=40.79 E-value=70 Score=27.45 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=38.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCCC--CchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRK--SIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~--s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
.+..++.+++ +|+||+|.... |.+-.+ +...+.+. +.++++|++.|.+-.
T Consensus 169 ~p~~l~AI~~--AD~IvlgPGS~~TSI~P~L---------lv~gi~~A-i~~s~A~kV~v~Nl~ 220 (323)
T 2o2z_A 169 LREGLEAIRK--ADVIVIGPGSLYTSVLPNL---------LVPGICEA-IKQSTARKVYICNVM 220 (323)
T ss_dssp CHHHHHHHHH--CSEEEECSSCTTTTHHHHH---------TSTTHHHH-HHHCCSEEEEECCSB
T ss_pred CHHHHHHHHh--CCEEEECCCCCHHHhcccc---------cCchHHHH-HHhCCCCEEEEcCCC
Confidence 5778888754 99999998764 555666 67778777 678899999998753
No 95
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=40.57 E-value=90 Score=25.08 Aligned_cols=75 Identities=13% Similarity=0.016 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhhhCCCceEEEEEEe--cCC-hHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHH
Q 037436 126 EKLHSMKSTCQLKKPGVQVEIAITE--GKE-KGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCI 202 (236)
Q Consensus 126 ~~l~~~~~~~~~~~~~v~v~~~v~~--G~~-~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll 202 (236)
..++.+++.++.. ++++.+.... +++ .....++.+...++|-||+........... -.-+
T Consensus 20 ~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~---------------~~~~ 82 (297)
T 3rot_A 20 SLFQGAKKAAEEL--KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKS---------------LQRA 82 (297)
T ss_dssp HHHHHHHHHHHHH--TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHH---------------HHHH
T ss_pred HHHHHHHHHHHHh--CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHH---------------HHHH
Confidence 3444555555544 6666655433 222 123566666678999999875543322221 2335
Q ss_pred HhCCCeEEEEeCCCC
Q 037436 203 QNSSRMTIAVRRKSS 217 (236)
Q Consensus 203 ~~s~~PVlvV~~~~~ 217 (236)
....+||+.+-....
T Consensus 83 ~~~giPvV~~~~~~~ 97 (297)
T 3rot_A 83 NKLNIPVIAVDTRPK 97 (297)
T ss_dssp HHHTCCEEEESCCCS
T ss_pred HHCCCCEEEEcCCCc
Confidence 567899999865543
No 96
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=40.29 E-value=94 Score=27.20 Aligned_cols=93 Identities=11% Similarity=0.110 Sum_probs=56.6
Q ss_pred EEEEEecCCHhHHHHHHHHHHhhccCCC---------E-----EEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 037436 70 KVMVVADSSLDAKGALEWALSHTVQCQD---------T-----IVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTC 135 (236)
Q Consensus 70 ~ILV~vD~s~~s~~al~~A~~la~~~~~---------~-----l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (236)
+|-|++...+.++...+.|..+.+..+. . =.++|+.. |..+.. +....++.+.+.+
T Consensus 14 ~igi~t~t~s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~-pd~F~s---------e~~ttI~~I~~~a 83 (371)
T 3qi7_A 14 KVAVVTQPLSENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVL-PENFTS---------NIDSAINKIVKLA 83 (371)
T ss_dssp EEEEEECCTTTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEEC-CTTGGG---------GHHHHHHHHHGGG
T ss_pred EEEEEcCCcCCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEecc-CCCchH---------HHHHHHHHHHHHh
Confidence 7999998877777777777777766443 1 24777754 333311 1222355566666
Q ss_pred hhhCCCceEEEEEEecCChHHHHHHHHHHCCCCEEEEccC
Q 037436 136 QLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQR 175 (236)
Q Consensus 136 ~~~~~~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~ 175 (236)
. .+++++-+.... .+.....++.+++.++|.|+++..
T Consensus 84 ~--~~gyk~II~n~~-~~~~~~~i~~lkekrvDgIIi~~~ 120 (371)
T 3qi7_A 84 D--DKEVQAIVVSTD-QAGLLPALQKVKEKRPEIITISAP 120 (371)
T ss_dssp G--CTTEEEEEEECS-SCCCHHHHHHHHHHCTTSEEEESS
T ss_pred h--cCCCeEEEEECC-CcchHHHHHHHHhcCCCEEEEecc
Confidence 6 345554444333 231367788899899998887654
No 97
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=39.91 E-value=48 Score=28.70 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=37.4
Q ss_pred HHHHHHHHHHCCCCEEEEccCCC--CchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRK--SIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~--s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
.+..++.+++ +|+||+|...- |.+-.+ +...+.+. |.++++|++.|.+-
T Consensus 179 ~p~al~AI~~--AD~IvlgPGSlyTSI~P~L---------lv~gi~~A-i~~s~A~kV~V~Nl 229 (341)
T 2p0y_A 179 VQPVIDAIMA--ADQIVLGPGSLFTSILPNL---------TIGNIGRA-VCESDAEVVYICNI 229 (341)
T ss_dssp CHHHHHHHHH--CSEEEECSSCCCCCCHHHH---------SSHHHHHH-HHHCSSEEEEECCS
T ss_pred CHHHHHHHHh--CCEEEECCCCCHHHhcccc---------cCccHHHH-HHhCCCCEEEEeCC
Confidence 5677787754 99999998764 566666 66777776 67889999999763
No 98
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=39.62 E-value=86 Score=27.04 Aligned_cols=78 Identities=8% Similarity=0.035 Sum_probs=46.3
Q ss_pred CHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHHH
Q 037436 78 SLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPI 157 (236)
Q Consensus 78 s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~~ 157 (236)
...+++.+++|.++|.+...+|+++|=.. .. +....-..+. +.+..+ .+|+|.++..++.. .
T Consensus 153 ~~~~eRiar~AFe~A~~rrkkVt~v~KaN---vl------k~s~glf~~~---~~eva~-eyp~i~~~~~~vD~-----~ 214 (337)
T 1w0d_A 153 AFGVRRVVADAFERARRRRKHLTLVHKTN---VL------TFAGGLWLRT---VDEVGE-CYPDVEVAYQHVDA-----A 214 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEECTT---TS------HHHHHHHHHH---HHHHHT-TCTTSEEEEEEHHH-----H
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEECCc---cc------hhhhHHHHHH---HHHHHH-HCCceEEEEEEHHH-----H
Confidence 56778899999999988877888887422 22 1111111222 222222 47889888776542 2
Q ss_pred HHHHHH-HCCCCEEEEc
Q 037436 158 IVEEAK-RQNVSLLVLG 173 (236)
Q Consensus 158 I~~~a~-~~~~DLLVmG 173 (236)
..+.++ -.+.|+||+.
T Consensus 215 ~mqlv~~P~~FDVivt~ 231 (337)
T 1w0d_A 215 TIHMITDPGRFDVIVTD 231 (337)
T ss_dssp HHHHHHCGGGCSEEEEC
T ss_pred HHHHhhCcccccEEEEC
Confidence 233333 3678888876
No 99
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=39.06 E-value=86 Score=21.00 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=31.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
+...++.++...+|+|++...-... .++ .+.+.+-....+|++++....
T Consensus 36 ~~~a~~~~~~~~~dlvi~D~~l~~~-~g~------------~~~~~l~~~~~~~ii~~s~~~ 84 (123)
T 1xhf_A 36 GAEMHQILSEYDINLVIMDINLPGK-NGL------------LLARELREQANVALMFLTGRD 84 (123)
T ss_dssp HHHHHHHHHHSCCSEEEECSSCSSS-CHH------------HHHHHHHHHCCCEEEEEESCC
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCCC-CHH------------HHHHHHHhCCCCcEEEEECCC
Confidence 4667777788899999998763321 111 133444444578999886543
No 100
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=38.69 E-value=1e+02 Score=26.31 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=41.6
Q ss_pred HHHHHHHHhhhhCCCceEEEEEEecCCh---HHHHHHHHHHCCCCEEE-EccCCCCchhhhhhhccCCCcccCcHHHHHH
Q 037436 127 KLHSMKSTCQLKKPGVQVEIAITEGKEK---GPIIVEEAKRQNVSLLV-LGQRRKSIVWTLMNRWSSKKKAVGDIADYCI 202 (236)
Q Consensus 127 ~l~~~~~~~~~~~~~v~v~~~v~~G~~~---~~~I~~~a~~~~~DLLV-mG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll 202 (236)
..+++.+.++. .++++.+.+..|.+. ...+.+.+++.++|+|| +|.- ...+++..+.
T Consensus 46 ~~~~v~~~L~~--~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGG-----------------sv~D~aK~iA 106 (370)
T 1jq5_A 46 AGHTIVNELKK--GNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGG-----------------KTLDTAKAVA 106 (370)
T ss_dssp THHHHHHHHHT--TTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESH-----------------HHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCh-----------------HHHHHHHHHH
Confidence 34455555543 367765555556652 34667777888999988 6521 1123333444
Q ss_pred HhCCCeEEEEeCC
Q 037436 203 QNSSRMTIAVRRK 215 (236)
Q Consensus 203 ~~s~~PVlvV~~~ 215 (236)
....+|++.||=.
T Consensus 107 ~~~~~p~i~IPTT 119 (370)
T 1jq5_A 107 DELDAYIVIVPTA 119 (370)
T ss_dssp HHHTCEEEEEESS
T ss_pred HhcCCCEEEeccc
Confidence 4457999999864
No 101
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=38.67 E-value=98 Score=21.86 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~ 215 (236)
....++.+++..+|+||+...-... .++ .+...+-... .+|++++-..
T Consensus 40 ~~~a~~~l~~~~~dlvi~d~~l~~~-~g~------------~~~~~l~~~~~~~~ii~ls~~ 88 (154)
T 2rjn_A 40 PLDALEALKGTSVQLVISDMRMPEM-GGE------------VFLEQVAKSYPDIERVVISGY 88 (154)
T ss_dssp HHHHHHHHTTSCCSEEEEESSCSSS-CHH------------HHHHHHHHHCTTSEEEEEECG
T ss_pred HHHHHHHHhcCCCCEEEEecCCCCC-CHH------------HHHHHHHHhCCCCcEEEEecC
Confidence 4677788888899999998764321 111 1334444443 5899888654
No 102
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=38.26 E-value=53 Score=28.36 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=40.7
Q ss_pred HHHHHHHHHHCCCCEEEEccCCC--CchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCCC---CCCcee
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRK--SIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKSS---KLGGYL 223 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~--s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~~---~~~~~l 223 (236)
.+..++.+++ +|+||+|.... |.+-.+ +...+.+. +.++++|++.|.+-.. ...||-
T Consensus 168 ~p~~l~AI~~--AD~IvlgPGS~~TSI~P~L---------lv~gi~~A-i~~s~A~kV~v~N~~~~~GEt~g~s 229 (332)
T 2ppv_A 168 MNEAIEALEQ--ADLIVLGPGSLYTSVISNL---------CVKGISEA-LLRTSAPKLYVSNVMTQPGETDNYD 229 (332)
T ss_dssp CHHHHHHHHH--CSEEEECSSCCCCCCHHHH---------TSHHHHHH-HHHCCSCEEEECCSBCCTTTCTTCC
T ss_pred CHHHHHHHHh--CCEEEECCCCCHHHhcccc---------cCchHHHH-HHhCCCCEEEEcCCCCCCCCCCCCC
Confidence 5677887754 99999998764 555666 66667666 6789999999987532 345553
No 103
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=37.41 E-value=99 Score=21.23 Aligned_cols=49 Identities=8% Similarity=-0.048 Sum_probs=30.6
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHH---hCCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQ---NSSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~---~s~~PVlvV~~~~ 216 (236)
....++.+++..+|+||+...-... .++ .+.+.+-+ ...+|++++-...
T Consensus 43 ~~~a~~~l~~~~~dlii~d~~l~~~-~g~------------~~~~~l~~~~~~~~~~ii~~s~~~ 94 (143)
T 3cnb_A 43 PFDAGDLLHTVKPDVVMLDLMMVGM-DGF------------SICHRIKSTPATANIIVIAMTGAL 94 (143)
T ss_dssp HHHHHHHHHHTCCSEEEEETTCTTS-CHH------------HHHHHHHTSTTTTTSEEEEEESSC
T ss_pred HHHHHHHHHhcCCCEEEEecccCCC-cHH------------HHHHHHHhCccccCCcEEEEeCCC
Confidence 4667777888899999999764321 111 13344443 2458999886543
No 104
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=36.44 E-value=2e+02 Score=24.60 Aligned_cols=115 Identities=10% Similarity=0.132 Sum_probs=72.3
Q ss_pred HHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEe-c----CCh----
Q 037436 84 ALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITE-G----KEK---- 154 (236)
Q Consensus 84 al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~-G----~~~---- 154 (236)
.+.|.++.+++.++..+-+||..-+.. ..+.+.+..+.+.++.+.|+.. ++.+-..++. + ++.
T Consensus 111 l~~~sve~a~~~GADAVk~lv~~g~d~------~~e~~~~q~~~l~rv~~ec~~~--GiPlllEil~y~~~~~~~~~~~~ 182 (332)
T 3iv3_A 111 LVDWSIKRLKEAGADAVKFLLYYDVDG------DPQVNVQKQAYIERIGSECQAE--DIPFFLEILTYDETISNNSSVEF 182 (332)
T ss_dssp CTTCCHHHHHHTTCSEEEEEEEECTTS------CHHHHHHHHHHHHHHHHHHHHH--TCCEEEEEEECBTTBSCTTSHHH
T ss_pred ccccCHHHHHHcCCCEEEEEEEcCCCc------hHHHHHHHHHHHHHHHHHHHHc--CCceEEEEeccCCCCCCCcchhh
Confidence 567888999999999999999883321 2334455667788888888865 7776665543 2 221
Q ss_pred ----HHHHHHHHHH-----CCCCEEEEccCCCCc-hhhhhhhccCCCcccC----------cHHHHHHHhCCCeEEEEeC
Q 037436 155 ----GPIIVEEAKR-----QNVSLLVLGQRRKSI-VWTLMNRWSSKKKAVG----------DIADYCIQNSSRMTIAVRR 214 (236)
Q Consensus 155 ----~~~I~~~a~~-----~~~DLLVmG~~~~s~-~~~l~~~~~~~~~~~g----------s~~~~ll~~s~~PVlvV~~ 214 (236)
.+.|...++. .++|++=+-..+... ..++ --| ..-.++...+++|++++.-
T Consensus 183 a~~~p~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~---------~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsg 253 (332)
T 3iv3_A 183 AKVKVHKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGF---------AEGEVVYSKEEAAQAFREQEASTDLPYIYLSA 253 (332)
T ss_dssp HTTHHHHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTT---------CSSCCCBCHHHHHHHHHHHHHTCSSCEEEECT
T ss_pred hccCHHHHHHHHHHHhhcCcCCcEEEEecCCChhhhccc---------ccccccccHHHHHHHHHHHHhcCCCCEEEECC
Confidence 1235555554 499999888765421 1111 001 0135566788999998764
Q ss_pred C
Q 037436 215 K 215 (236)
Q Consensus 215 ~ 215 (236)
.
T Consensus 254 G 254 (332)
T 3iv3_A 254 G 254 (332)
T ss_dssp T
T ss_pred C
Confidence 4
No 105
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=36.19 E-value=88 Score=24.40 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=16.7
Q ss_pred CcHHHHHHHhCCCeEEEEeCC
Q 037436 195 GDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 195 gs~~~~ll~~s~~PVlvV~~~ 215 (236)
|+++..|-++.++||+-++-.
T Consensus 59 Ggta~~lr~~~~iPVV~I~~s 79 (196)
T 2q5c_A 59 GATSDYIKKSVSIPSISIKVT 79 (196)
T ss_dssp HHHHHHHHTTCSSCEEEECCC
T ss_pred ChHHHHHHHhCCCCEEEEcCC
Confidence 567788888889999988754
No 106
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=36.11 E-value=1.3e+02 Score=23.91 Aligned_cols=72 Identities=11% Similarity=-0.013 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhhhCCCceEEEEEEecCC-hHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh
Q 037436 126 EKLHSMKSTCQLKKPGVQVEIAITEGKE-KGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN 204 (236)
Q Consensus 126 ~~l~~~~~~~~~~~~~v~v~~~v~~G~~-~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~ 204 (236)
..++.+.+.++.. ++++.+.-. .++ .....++.+...++|-||+.......... . -..+..
T Consensus 19 ~~~~gi~~~a~~~--g~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~--------------~-~~~~~~ 80 (306)
T 8abp_A 19 TEWKFADKAGKDL--GFEVIKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSA--------------I-VAKARG 80 (306)
T ss_dssp HHHHHHHHHHHHH--TEEEEEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHH--------------H-HHHHHH
T ss_pred HHHHHHHHHHHHc--CCEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHH--------------H-HHHHHH
Confidence 3444555555544 555543322 222 12345556666789999987643222111 1 233567
Q ss_pred CCCeEEEEeCC
Q 037436 205 SSRMTIAVRRK 215 (236)
Q Consensus 205 s~~PVlvV~~~ 215 (236)
..+||+++-..
T Consensus 81 ~~iPvV~~~~~ 91 (306)
T 8abp_A 81 YDMKVIAVDDQ 91 (306)
T ss_dssp TTCEEEEESSC
T ss_pred CCCcEEEeCCC
Confidence 79999999743
No 107
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=35.98 E-value=1.6e+02 Score=23.25 Aligned_cols=76 Identities=8% Similarity=0.037 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhhCCCceEEEEEEecCC-hHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHH
Q 037436 125 YEKLHSMKSTCQLKKPGVQVEIAITEGKE-KGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQ 203 (236)
Q Consensus 125 ~~~l~~~~~~~~~~~~~v~v~~~v~~G~~-~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~ 203 (236)
.+.++.+++.+... ++++.+....++. .....++.+...++|-||+.......... . -..+.
T Consensus 24 ~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~--------------~-~~~~~ 86 (293)
T 3l6u_A 24 QRLINAFKAEAKAN--KYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGS--------------A-IEEAK 86 (293)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHH--------------H-HHHHH
T ss_pred HHHHHHHHHHHHHc--CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHH--------------H-HHHHH
Confidence 34455566666644 6766665444433 12356666677899999986543322211 1 23345
Q ss_pred hCCCeEEEEeCCCC
Q 037436 204 NSSRMTIAVRRKSS 217 (236)
Q Consensus 204 ~s~~PVlvV~~~~~ 217 (236)
...+||+++-....
T Consensus 87 ~~~iPvV~~~~~~~ 100 (293)
T 3l6u_A 87 KAGIPVFAIDRMIR 100 (293)
T ss_dssp HTTCCEEEESSCCC
T ss_pred HcCCCEEEecCCCC
Confidence 67999999965543
No 108
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=35.75 E-value=79 Score=25.77 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=51.4
Q ss_pred CEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEE
Q 037436 69 NKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAI 148 (236)
Q Consensus 69 ~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v 148 (236)
.+++|.+.+..+|..++.++. +.+-+|+.|+... +... . ...- ....++.++..++.- ++...+.-
T Consensus 5 MKvvvl~SGGkDSs~al~~l~----~~G~eV~~L~~~~-~~~~--~----s~~~-h~~~~e~a~~~A~~L--GIpl~~v~ 70 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAI----KNRFSVKFLVTMV-SENE--E----SYMY-HTINANLTDLQARAL--GIPLVKGF 70 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHH----HTTCEEEEEEEEE-CC---------------CCSSSHHHHHHHHH--TCCEEEEE
T ss_pred CEEEEEecCcHHHHHHHHHHH----HcCCeEEEEEEEc-CCCC--C----cccc-CCccHHHHHHHHHHc--CCCEEEEE
Confidence 479999999999997776554 4577888777654 2211 0 0000 000112233333432 56555555
Q ss_pred EecC---ChHHHHHHHHHHCCCCEEEEccC
Q 037436 149 TEGK---EKGPIIVEEAKRQNVSLLVLGQR 175 (236)
Q Consensus 149 ~~G~---~~~~~I~~~a~~~~~DLLVmG~~ 175 (236)
..|. . .+.+.+..++.+++.+|.|.-
T Consensus 71 ~~g~~~~e-~e~l~~~l~~~~i~~vv~Gdi 99 (237)
T 3rjz_A 71 TQGEKEKE-VEDLKRVLSGLKIQGIVAGAL 99 (237)
T ss_dssp C------C-HHHHHHHHTTSCCSEEECC--
T ss_pred CCCCchHH-HHHHHHHHHhcCCcEEEECCc
Confidence 5553 3 467777788789999999975
No 109
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=35.62 E-value=86 Score=21.78 Aligned_cols=49 Identities=4% Similarity=-0.129 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
+...++.++...+|+|++...-... .++ .+.+.+-....+|++++-...
T Consensus 37 ~~~al~~~~~~~~dlvllD~~l~~~-~g~------------~l~~~l~~~~~~~ii~ls~~~ 85 (136)
T 2qzj_A 37 CEEAIGKIFSNKYDLIFLEIILSDG-DGW------------TLCKKIRNVTTCPIVYMTYIN 85 (136)
T ss_dssp HHHHHHHHHHCCCSEEEEESEETTE-EHH------------HHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCC-CHH------------HHHHHHccCCCCCEEEEEcCC
Confidence 4566777888899999998653221 111 133444433478998886543
No 110
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=35.53 E-value=1e+02 Score=20.86 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh---CCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN---SSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~---s~~PVlvV~~~~ 216 (236)
+...++.+++..+|+|++...-.. ..++ .+.+.+-.. ..+|++++....
T Consensus 35 ~~~al~~l~~~~~dlvllD~~~p~-~~g~------------~~~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 35 GQIALEKLSEFTPDLIVLXIMMPV-MDGF------------TVLKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp HHHHHHHHTTBCCSEEEECSCCSS-SCHH------------HHHHHHHTSTTTTTSCEEEEESCC
T ss_pred HHHHHHHHHhcCCCEEEEeccCCC-CcHH------------HHHHHHHhcccccCCCEEEEecCC
Confidence 566777888899999999875322 1111 133444322 358999887543
No 111
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=35.47 E-value=1.1e+02 Score=26.99 Aligned_cols=77 Identities=8% Similarity=0.106 Sum_probs=46.0
Q ss_pred CHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHHH
Q 037436 78 SLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPI 157 (236)
Q Consensus 78 s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~~ 157 (236)
...+++.+++|.++|.+...+|+++|=.. .. .... -..+. +.+..+ .+|+|+++..++.. .
T Consensus 185 r~~~eRIar~AFe~A~~rrkkVT~v~KaN---Vl---~t~g----lfr~~---~~eva~-eYPdV~~~~~~VD~-----~ 245 (390)
T 3u1h_A 185 REEIERIIRKAFELALTRKKKVTSVDKAN---VL---ESSR----LWREV---AEEVAK-EYPDVELEHMLVDN-----A 245 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTT---TC---HHHH----HHHHH---HHHHHT-TCTTSEEEEEEHHH-----H
T ss_pred HHHHhHHHHHHHHHHHHcCCceEEEECCc---cc---ccch----HHHHH---HHHHHh-HCCCCeEEeeeHHH-----H
Confidence 46788899999999998888888887422 21 0111 11122 222222 47899888776642 2
Q ss_pred HHHHH-HHCCCCEEEEc
Q 037436 158 IVEEA-KRQNVSLLVLG 173 (236)
Q Consensus 158 I~~~a-~~~~~DLLVmG 173 (236)
..+.+ +-.+.|+||+.
T Consensus 246 amqLV~~P~~FDViVt~ 262 (390)
T 3u1h_A 246 AMQLIRNPRQFDVIVTE 262 (390)
T ss_dssp HHHHHHCGGGCSEEEEC
T ss_pred HHHHHhCcccCcEEEec
Confidence 22333 23678888876
No 112
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=34.91 E-value=1.8e+02 Score=24.04 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=22.9
Q ss_pred HHHHHhhhhCCCceEEEEEEecCChHHHHHHHHHHCCCCEEEEc
Q 037436 130 SMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLG 173 (236)
Q Consensus 130 ~~~~~~~~~~~~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG 173 (236)
+++..++.. ++++++...+....+..+.+.+.+ ++|+||+.
T Consensus 30 ~i~~~l~~~--~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~ 70 (304)
T 3s40_A 30 KIVPPLAAA--FPDLHILHTKEQGDATKYCQEFAS-KVDLIIVF 70 (304)
T ss_dssp HHHHHHHHH--CSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEE
T ss_pred HHHHHHHHc--CCeEEEEEccCcchHHHHHHHhhc-CCCEEEEE
Confidence 344444433 667776665544434556555543 77776654
No 113
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=34.91 E-value=57 Score=25.56 Aligned_cols=34 Identities=6% Similarity=-0.012 Sum_probs=26.1
Q ss_pred CEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEE
Q 037436 69 NKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLY 103 (236)
Q Consensus 69 ~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llh 103 (236)
++|++++-++..+..+++..-.+.+. +.+|.++-
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL-DFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 78999999998888888877666544 76665543
No 114
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=34.65 E-value=1.1e+02 Score=20.83 Aligned_cols=49 Identities=6% Similarity=-0.012 Sum_probs=30.2
Q ss_pred HHHHHHHHHH-------CCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh---CCCeEEEEeCCC
Q 037436 155 GPIIVEEAKR-------QNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN---SSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~-------~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~---s~~PVlvV~~~~ 216 (236)
....++.+++ ..+|+||+...-... .++ .+.+.+-+. ..+|++++-...
T Consensus 37 ~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~-~g~------------~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 37 GMEAMAYLRQEGEYANASRPDLILLXLNLPKK-DGR------------EVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp HHHHHHHHTTCGGGGSCCCCSEEEECSSCSSS-CHH------------HHHHHHHHSTTGGGSCEEEEESCC
T ss_pred HHHHHHHHHcccccccCCCCcEEEEecCCCcc-cHH------------HHHHHHHcCcccccccEEEEecCC
Confidence 4566777776 789999998764321 111 133444444 358999886553
No 115
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=34.48 E-value=1e+02 Score=20.54 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=28.4
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh---CCCeEEEE
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN---SSRMTIAV 212 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~---s~~PVlvV 212 (236)
....++.+++..+|+||+...-.+...++ .+.+.+-+. ..+|++++
T Consensus 38 ~~~a~~~~~~~~~dlvi~d~~~~~~~~g~------------~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 38 GKGSVEQIRRDRPDLVVLAVDLSAGQNGY------------LICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHHCCSEEEEESBCGGGCBHH------------HHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCCHH------------HHHHHHhcCccccCCCEEEE
Confidence 45667777778899999987532111111 133444443 46899988
No 116
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=34.46 E-value=1.7e+02 Score=24.57 Aligned_cols=87 Identities=9% Similarity=0.057 Sum_probs=50.3
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEE
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEI 146 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 146 (236)
...++||++.+ -+|.-|+..+ .+.+.+|..+|+.. + .. ..+.+.+..+.+... ...-.+..
T Consensus 178 ~~~kvlvllSG-vDS~vaa~ll----~~~G~~v~~v~~~~-~-----~~----~~~~a~~~a~~l~~~----~~~~~i~~ 238 (307)
T 1vbk_A 178 TEGRMIGILHD-ELSALAIFLM----MKRGVEVIPVYIGK-D-----DK----NLEKVRSLWNLLKRY----SYGSKGFL 238 (307)
T ss_dssp TTCEEEEECSS-HHHHHHHHHH----HHBTCEEEEEEESC-S-----SH----HHHHHHHHHHHHHTT----CTTSCCCC
T ss_pred CCCcEEEEEeC-CcHHHHHHHH----HhCCCeEEEEEEEE-C-----HH----HHHHHHHHHHHHhhh----ccCCCCcE
Confidence 44689999999 8887555443 34588999999972 1 11 111222222222110 01112333
Q ss_pred EEEecCChHHHHHHHHHHCCCCEEEEccC
Q 037436 147 AITEGKEKGPIIVEEAKRQNVSLLVLGQR 175 (236)
Q Consensus 147 ~v~~G~~~~~~I~~~a~~~~~DLLVmG~~ 175 (236)
.++. + ...+.++|++.++|.|+.|.+
T Consensus 239 ~vv~--~-~~~~~~~A~~~ga~~I~tG~~ 264 (307)
T 1vbk_A 239 VVAE--S-FDRVLKLIRDFGVKGVIKGLR 264 (307)
T ss_dssp EEES--S-HHHHHHHHHHHTCCEEECCCC
T ss_pred EEeC--C-CHHHHHHHHHcCCCEEEECcc
Confidence 3333 1 234459999999999999986
No 117
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=34.40 E-value=1.4e+02 Score=25.08 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=20.8
Q ss_pred HHHHHHhhhhCCCceEEEEEEecCChHHHHHHHHHHCCCCEEEEc
Q 037436 129 HSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLG 173 (236)
Q Consensus 129 ~~~~~~~~~~~~~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG 173 (236)
+++...++.. ++++++........+..+.+.+...++|+||+.
T Consensus 45 ~~i~~~L~~~--g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~ 87 (337)
T 2qv7_A 45 PDALIKLEKA--GYETSAYATEKIGDATLEAERAMHENYDVLIAA 87 (337)
T ss_dssp HHHHHHHHHT--TEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEE
T ss_pred HHHHHHHHHc--CCeEEEEEecCcchHHHHHHHHhhcCCCEEEEE
Confidence 3344444432 555555544433223444444445567766554
No 118
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=33.86 E-value=1.2e+02 Score=26.78 Aligned_cols=77 Identities=5% Similarity=0.046 Sum_probs=45.6
Q ss_pred CHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHHH
Q 037436 78 SLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPI 157 (236)
Q Consensus 78 s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~~ 157 (236)
...++..+++|.++|.+...+|+++|= .... + ...-..+-+.+. ...+|+|+++..++.. .
T Consensus 206 r~~~eRIar~AFe~A~~rrkkVT~v~K---aNVl------k----~sglf~~~~~ev-a~eYPdV~~~~~~VD~-----~ 266 (405)
T 3r8w_A 206 AHEIDRIARVAFETARKRRGKLCSVDK---ANVL------E----ASILWRKRVTAL-ASEYPDVELSHMYVDN-----A 266 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEEC---TTTC------H----HHHHHHHHHHHH-GGGSTTSEEEEEEHHH-----H
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEC---chhh------c----cccHHHHHHHHH-HhHCCCCeEEeeeHHH-----H
Confidence 467788999999999887788888874 2222 0 111111122232 2348899888776542 2
Q ss_pred HHHHHH-HCCCCEEEEc
Q 037436 158 IVEEAK-RQNVSLLVLG 173 (236)
Q Consensus 158 I~~~a~-~~~~DLLVmG 173 (236)
..+.++ -.+.|+||+.
T Consensus 267 amqLV~~P~~FDViVt~ 283 (405)
T 3r8w_A 267 AMQLVRDPKQFDTIVTN 283 (405)
T ss_dssp HHHHHHCGGGCSEEEEC
T ss_pred HHHHHhChhhCcEEeec
Confidence 223332 3678888865
No 119
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=33.77 E-value=1.2e+02 Score=26.41 Aligned_cols=78 Identities=4% Similarity=-0.014 Sum_probs=46.8
Q ss_pred CCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHH
Q 037436 77 SSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGP 156 (236)
Q Consensus 77 ~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~ 156 (236)
....+++.+++|.++|.+....|+++|=.. .. + ...-..+. +.+..+ .+|+|+++..++..
T Consensus 172 Tr~~~eRIar~AFe~A~~rrkkVt~v~KaN---vl------k-t~glf~~~---~~eva~-eypdV~~~~~~VD~----- 232 (366)
T 1vlc_A 172 DRKTVERIARTAFEIAKNRRKKVTSVDKAN---VL------Y-SSMLWRKV---VNEVAR-EYPDVELTHIYVDN----- 232 (366)
T ss_dssp CHHHHHHHHHHHHHHHHTTTSEEEEEECTT---TC------H-HHHHHHHH---HHHHHT-TCTTSEEEEEEHHH-----
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEEEECCc---cc------c-cchHHHHH---HHHHHH-HCCCceEEeeeHHH-----
Confidence 356778899999999998877888877533 22 1 11111222 223322 48889888776642
Q ss_pred HHHHHHH-HCCCCEEEEc
Q 037436 157 IIVEEAK-RQNVSLLVLG 173 (236)
Q Consensus 157 ~I~~~a~-~~~~DLLVmG 173 (236)
...+.++ -.+.|+||+.
T Consensus 233 ~~mqlv~~P~~FDVivt~ 250 (366)
T 1vlc_A 233 AAMQLILKPSQFDVILTT 250 (366)
T ss_dssp HHHHHHHCGGGCSEEEEC
T ss_pred HHHHHhhCcccceEEEEc
Confidence 2233333 3678888875
No 120
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=33.68 E-value=1.5e+02 Score=24.88 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=27.7
Q ss_pred CEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEe
Q 037436 69 NKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIA 106 (236)
Q Consensus 69 ~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~ 106 (236)
.+|+|++.+..+|.-++..+.+. .+.+|+++|+..
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~---~g~~v~av~vd~ 55 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKA---IGDRLHAVFVNT 55 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEEC
T ss_pred CCEEEEEeChHHHHHHHHHHHHh---hCCCEEEEEEcC
Confidence 57999999999998777666554 246799999876
No 121
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=33.60 E-value=52 Score=25.52 Aligned_cols=115 Identities=9% Similarity=0.020 Sum_probs=61.5
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEE
Q 037436 66 RYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVE 145 (236)
Q Consensus 66 ~~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 145 (236)
.|.++|++++-++..+..+++..-.+ ++.+.+|.++-.-. .. ..... +.+ +... + .+-
T Consensus 3 ~m~k~IllgvTGs~aa~k~~~ll~~L-~~~g~~V~vv~T~~---A~---~fi~~------~~l---~~l~-----~-~v~ 60 (175)
T 3qjg_A 3 AMGENVLICLCGSVNSINISHYIIEL-KSKFDEVNVIASTN---GR---KFING------EIL---KQFC-----D-NYY 60 (175)
T ss_dssp --CCEEEEEECSSGGGGGHHHHHHHH-TTTCSEEEEEECTG---GG---GGSCH------HHH---HHHC-----S-CEE
T ss_pred CCCCEEEEEEeCHHHHHHHHHHHHHH-HHCCCEEEEEECcC---HH---HHhhH------HHH---HHhc-----C-CEE
Confidence 46689999999999998888776555 44577766554322 11 11000 011 1111 1 111
Q ss_pred EEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEe
Q 037436 146 IAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVR 213 (236)
Q Consensus 146 ~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~ 213 (236)
.. ...+ ....++.+ ..+|++|+..-.-+.+.++ +.+ +..+....++....+|++++|
T Consensus 61 ~~--~~~~-~~~hi~l~--~~aD~~vVaPaTanTlaki----A~G--iaDnLlt~~~la~~~pvvl~P 117 (175)
T 3qjg_A 61 DE--FEDP-FLNHVDIA--NKHDKIIILPATSNTINKI----ANG--ICDNLLLTICHTAFEKLSIFP 117 (175)
T ss_dssp CT--TTCT-TCCHHHHH--HTCSEEEEEEECHHHHHHH----HTT--CCCSHHHHHHHTCGGGEEEEE
T ss_pred ec--CCCC-cccccccc--chhCEEEEeeCCHHHHHHH----Hcc--ccCCHHHHHHHHcCCCEEEEe
Confidence 00 0012 12234444 4689999987765554443 111 223444456667799999998
No 122
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=33.51 E-value=1.1e+02 Score=22.90 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRR 214 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~ 214 (236)
+...++.+++..+|+||+...-... .++ .+.+.+-...++|++++-.
T Consensus 47 ~~~al~~~~~~~~dlvi~D~~~p~~-~g~------------~~~~~l~~~~~~pii~lt~ 93 (205)
T 1s8n_A 47 GQEAVELAELHKPDLVIMDVKMPRR-DGI------------DAASEIASKRIAPIVVLTA 93 (205)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCSSS-CHH------------HHHHHHHHTTCSCEEEEEE
T ss_pred HHHHHHHHhhcCCCEEEEeCCCCCC-ChH------------HHHHHHHhcCCCCEEEEec
Confidence 4566677777889999998763221 111 2345555556778888854
No 123
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=33.23 E-value=63 Score=27.77 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=37.1
Q ss_pred HHHHHHHHHHCCCCEEEEccCCC--CchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRK--SIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~--s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
.+..++.+++ +|+||+|...- |.+-.+ +...+.+. +.++++|++.|.+-
T Consensus 175 ~p~al~AI~~--AD~IvlgPGSl~TSI~P~L---------lv~gi~~A-i~~s~A~kV~v~Nl 225 (326)
T 2q7x_A 175 SRRVVQTILE--SDMIVLGPGSLFTSILPNI---------VIXEIGRA-LLETXAEIAYVCNI 225 (326)
T ss_dssp CSHHHHHHHH--CSEEEECSSCCCCCCHHHH---------TSHHHHHH-HHHCSSEEEEECCS
T ss_pred CHHHHHHHHh--CCEEEECCCCCHHHHhhhh---------hhccHHHH-HHhccCceEEeccC
Confidence 4677777754 99999998764 566666 66767776 67889999999863
No 124
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=33.01 E-value=1.5e+02 Score=23.46 Aligned_cols=71 Identities=11% Similarity=0.072 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhhhCCCceEEEEEEec--CC-hHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHH
Q 037436 125 YEKLHSMKSTCQLKKPGVQVEIAITEG--KE-KGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYC 201 (236)
Q Consensus 125 ~~~l~~~~~~~~~~~~~v~v~~~v~~G--~~-~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~l 201 (236)
.+.++.+++.++.. ++++.+....+ ++ ....+++.+...++|-||+.......+.. ..+.
T Consensus 21 ~~~~~g~~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~--------------~~~~- 83 (304)
T 3o1i_D 21 LSVNYGMVSEAEKQ--GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEH--------------NLKS- 83 (304)
T ss_dssp HHHHHHHHHHHHHH--TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTT--------------THHH-
T ss_pred HHHHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHH--------------HHHH-
Confidence 34445555555544 67666655554 32 23456666667899999988654332221 2233
Q ss_pred HHhCCCeEEEEe
Q 037436 202 IQNSSRMTIAVR 213 (236)
Q Consensus 202 l~~s~~PVlvV~ 213 (236)
+. ..+||+++-
T Consensus 84 ~~-~~iPvV~~~ 94 (304)
T 3o1i_D 84 WV-GNTPVFATV 94 (304)
T ss_dssp HT-TTSCEEECS
T ss_pred Hc-CCCCEEEec
Confidence 34 789999983
No 125
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=33.01 E-value=1.2e+02 Score=20.79 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=29.8
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~~ 216 (236)
....++.+++..+|+||+...-... .++ .+.+.+-+.. .+|++++-...
T Consensus 40 ~~~a~~~l~~~~~dlvi~d~~l~~~-~g~------------~~~~~l~~~~~~~~ii~~s~~~ 89 (137)
T 3hdg_A 40 GEEGERLFGLHAPDVIITDIRMPKL-GGL------------EMLDRIKAGGAKPYVIVISAFS 89 (137)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCSSS-CHH------------HHHHHHHHTTCCCEEEECCCCC
T ss_pred HHHHHHHHhccCCCEEEEeCCCCCC-CHH------------HHHHHHHhcCCCCcEEEEecCc
Confidence 4566777788899999999763321 111 1334444443 47888876543
No 126
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=32.99 E-value=1.3e+02 Score=26.23 Aligned_cols=78 Identities=8% Similarity=0.064 Sum_probs=46.3
Q ss_pred CCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHH
Q 037436 77 SSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGP 156 (236)
Q Consensus 77 ~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~ 156 (236)
....+++.+++|.++|.+...+|+++|=.. .. + ...-..+. +.+.. ..+|+|.++..++..
T Consensus 168 T~~~~eRiar~AFe~A~~rrkkVt~v~KaN---vl------k-~~~lf~~~---~~eva-~eypdI~~~~~~vD~----- 228 (363)
T 1cnz_A 168 HRFEIERIARIAFESARKRRRKVTSIDKAN---VL------Q-SSILWREI---VNDVA-KTYPDVELAHMYIDN----- 228 (363)
T ss_dssp EHHHHHHHHHHHHHHHHTTTSEEEEEECTT---TC------H-HHHHHHHH---HHHHH-TTCTTSEEEEEEHHH-----
T ss_pred cHHHHHHHHHHHHHHHHhcCCeEEEEECCc---cc------c-cchhHHHH---HHHHH-HHCCCceEeeeeHHH-----
Confidence 356788899999999998877888887533 22 1 11111222 22222 347889888766541
Q ss_pred HHHHHHH-HCCCCEEEEc
Q 037436 157 IIVEEAK-RQNVSLLVLG 173 (236)
Q Consensus 157 ~I~~~a~-~~~~DLLVmG 173 (236)
...+.++ -.+.|+||+.
T Consensus 229 ~~m~lv~~P~~FDVivt~ 246 (363)
T 1cnz_A 229 ATMQLIKDPSQFDVLLCS 246 (363)
T ss_dssp HHHHHHHCGGGCSEEEEC
T ss_pred HHHHHhhCcccceEEEEC
Confidence 2233333 3678888875
No 127
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=32.97 E-value=97 Score=26.03 Aligned_cols=91 Identities=9% Similarity=0.018 Sum_probs=52.1
Q ss_pred CEEEEEecCCHhHHHHHHHHHHhhcc------------------CCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHH
Q 037436 69 NKVMVVADSSLDAKGALEWALSHTVQ------------------CQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHS 130 (236)
Q Consensus 69 ~~ILV~vD~s~~s~~al~~A~~la~~------------------~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~ 130 (236)
.+|+|++.+..+|.-+|..+...... ....+.+||+.. .... .+..+..++
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDt-g~~f----------pet~~fv~~ 122 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQ-EETF----------PTLENFVLE 122 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCC-TTCC----------HHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeC-CCCC----------HHHHHHHHH
Confidence 47999999999998888776654311 245688888865 2111 112222222
Q ss_pred HHHHhhhhCCCceEEEEEEec-----CChHHHHHHHHHH-CCCCEEEEccCCC
Q 037436 131 MKSTCQLKKPGVQVEIAITEG-----KEKGPIIVEEAKR-QNVSLLVLGQRRK 177 (236)
Q Consensus 131 ~~~~~~~~~~~v~v~~~v~~G-----~~~~~~I~~~a~~-~~~DLLVmG~~~~ 177 (236)
+. +. .++++ .++.. ......+.++++. -..+.|++|.+..
T Consensus 123 ~~---~~--ygl~l--~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrd 168 (306)
T 2wsi_A 123 TS---ER--YCLSL--YESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHT 168 (306)
T ss_dssp HH---HH--TTEEE--EECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCC
T ss_pred HH---HH--cCCCE--EEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEecc
Confidence 22 21 14444 33322 1223456666666 3678999999864
No 128
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=32.85 E-value=1.2e+02 Score=20.79 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~~ 216 (236)
+...++.+++..+|+|++...-... .++ .+.+.+-+.. .+|++++....
T Consensus 38 ~~~al~~~~~~~~dlvilD~~lp~~-~g~------------~~~~~l~~~~~~~~ii~ls~~~ 87 (133)
T 3b2n_A 38 GLDAMKLIEEYNPNVVILDIEMPGM-TGL------------EVLAEIRKKHLNIKVIIVTTFK 87 (133)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCSSS-CHH------------HHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHHHHhhcCCCEEEEecCCCCC-CHH------------HHHHHHHHHCCCCcEEEEecCC
Confidence 4666777778889999999763221 111 1334444433 58999986543
No 129
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=32.60 E-value=1.3e+02 Score=26.30 Aligned_cols=77 Identities=4% Similarity=0.006 Sum_probs=45.9
Q ss_pred CHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHHH
Q 037436 78 SLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPI 157 (236)
Q Consensus 78 s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~~ 157 (236)
...+++.+++|.++|.+...+|+++|=-. .. . ... -..+-+.+..+ .+|+|+++..++.. .
T Consensus 166 r~~~eRIar~AFe~A~~rrkkVT~v~KaN---vl--~-t~g-------lf~~~~~eva~-eypdV~~~~~~VD~-----~ 226 (361)
T 3udu_A 166 KKEIERIARIAFESARIRKKKVHLIDKAN---VL--A-SSI-------LWREVVANVAK-DYQDINLEYMYVDN-----A 226 (361)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEECTT---TC--H-HHH-------HHHHHHHHHGG-GCTTSEEEEEEHHH-----H
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEECch---hh--c-cch-------HHHHHHHHHHH-HCCCCeEEeeeHHH-----H
Confidence 45778899999999988888888887422 22 0 111 11122233333 48899888776642 2
Q ss_pred HHHHH-HHCCCCEEEEc
Q 037436 158 IVEEA-KRQNVSLLVLG 173 (236)
Q Consensus 158 I~~~a-~~~~~DLLVmG 173 (236)
..+.+ +-.+.|+||+.
T Consensus 227 am~lv~~P~~FDViVt~ 243 (361)
T 3udu_A 227 AMQIVKNPSIFDVMLCS 243 (361)
T ss_dssp HHHHHHCGGGCSEEEEC
T ss_pred HHHHHhCcccCcEEEec
Confidence 22333 23678888876
No 130
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=32.33 E-value=1.2e+02 Score=20.82 Aligned_cols=48 Identities=8% Similarity=-0.005 Sum_probs=29.7
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh---CCCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN---SSRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~---s~~PVlvV~~~ 215 (236)
+...++.+++..+|+||+...-... .++ .+.+.+-+. ..+|++++-..
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~l~~~-~g~------------~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 35 EKEALEQIDHHHPDLVILDMDIIGE-NSP------------NLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEETTC-------------------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCC-cHH------------HHHHHHHcCcccCCCCEEEEecC
Confidence 5666777788899999999763221 111 244555444 45899988654
No 131
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=32.19 E-value=94 Score=25.69 Aligned_cols=138 Identities=9% Similarity=0.021 Sum_probs=86.5
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCC----chhHHHHHHHHHHHHHHHHHHHHhhhhCCCc
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQ----VKETKGKKLYLRAYEKLHSMKSTCQLKKPGV 142 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 142 (236)
.....=|+..+.-.....+..++.+|++.+-.| .-|.-...... ...-..+++.......+-.++..|+.. +.
T Consensus 27 ~VtSANIACGfHAGDp~~M~~tv~lA~~~gV~I-GAHPgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~~--G~ 103 (250)
T 2dfa_A 27 LVSSANLACGFHGGSPGRILEAVRLAKAHGVAV-GAHPGFPDLVGFGRREMALSPEEVYADVLYQIGALSAFLKAE--GL 103 (250)
T ss_dssp TCSEEEEECSSSSCCHHHHHHHHHHHHHTTCEE-EEECCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred hhhhhhhhccccCCCHHHHHHHHHHHHHcCCeE-ecCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--CC
Confidence 445566777776667778889999998876544 45665422221 112334555555555666677777754 55
Q ss_pred eEEEEEEec---------CChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEe
Q 037436 143 QVEIAITEG---------KEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVR 213 (236)
Q Consensus 143 ~v~~~v~~G---------~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~ 213 (236)
++...=-.| ...+.+|++.++..+.+|+++| +-||...+..+...+|++.--
T Consensus 104 ~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~-------------------l~gs~~~~~A~~~Gl~~~~E~ 164 (250)
T 2dfa_A 104 PLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVV-------------------LPGTVYEEEARKAGLRVVLEA 164 (250)
T ss_dssp CCCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEEE-------------------CTTSHHHHHHHHTTCCEEEEE
T ss_pred EeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEe-------------------cCChHHHHHHHHcCCcEEEEE
Confidence 544332223 2247899999999999999999 335566777788888887643
Q ss_pred --CCCCCCCceeeec
Q 037436 214 --RKSSKLGGYLITT 226 (236)
Q Consensus 214 --~~~~~~~~~li~t 226 (236)
+..=..+|-|++.
T Consensus 165 FADR~Y~~dG~LvpR 179 (250)
T 2dfa_A 165 FPERAYLRSGQLAPR 179 (250)
T ss_dssp CTTBCBCTTSSBCCT
T ss_pred eeccccCCCCCEecC
Confidence 2322345556654
No 132
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=32.08 E-value=2.1e+02 Score=23.42 Aligned_cols=50 Identities=12% Similarity=-0.090 Sum_probs=36.1
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEe
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVR 213 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~ 213 (236)
...|.+.+++.++|+|+.-........+. ..+..+...+..+++|+++..
T Consensus 137 ~~~l~~~ir~~~PdvV~t~~~~d~HpDH~---------~~~~a~~~A~~~~~~~~~~~e 186 (273)
T 3dff_A 137 ADDIRSIIDEFDPTLVVTCAAIGEHPDHE---------ATRDAALFATHEKNVPVRLWE 186 (273)
T ss_dssp HHHHHHHHHHHCCSEEEEECCTTCCHHHH---------HHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCChHHH---------HHHHHHHHHHHHcCCCEEEec
Confidence 34577788889999999965544555666 566677777777888877663
No 133
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=31.74 E-value=1.4e+02 Score=25.97 Aligned_cols=77 Identities=9% Similarity=0.067 Sum_probs=45.9
Q ss_pred CHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHHH
Q 037436 78 SLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPI 157 (236)
Q Consensus 78 s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~~ 157 (236)
...+++.+++|.++|.+....|+++|=.. .. + ...-..+. +.+.. ..+|+|.++..++.. .
T Consensus 162 ~~~~eRIar~AFe~A~~rrkkVt~v~KaN---vl------k-~~~lf~~~---~~eva-~eypdI~~~~~~VD~-----~ 222 (359)
T 2y3z_A 162 KPEVERVARVAFEAARKRRKHVVSVDKAN---VL------E-VGEFWRKT---VEEVG-RGYPDVALEHQYVDA-----M 222 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTT---TC------H-HHHHHHHH---HHHHH-TTCTTSEEEEEEHHH-----H
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEECCc---cc------c-ccHHHHHH---HHHHH-HHCCcEEEEeeEHHH-----H
Confidence 46678899999999998877888877532 22 1 11111222 22222 247889888776542 2
Q ss_pred HHHHHH-HCCCCEEEEc
Q 037436 158 IVEEAK-RQNVSLLVLG 173 (236)
Q Consensus 158 I~~~a~-~~~~DLLVmG 173 (236)
..+.++ -.+.|+||+.
T Consensus 223 ~mqlv~~P~~FDVivt~ 239 (359)
T 2y3z_A 223 AMHLVRSPARFDVVVTG 239 (359)
T ss_dssp HHHHHHCGGGCSEEEEC
T ss_pred HHHHhhCcccccEEEEc
Confidence 233333 3678888876
No 134
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=31.64 E-value=2e+02 Score=23.21 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhhCCCceEEEEEEecCC-hHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh
Q 037436 126 EKLHSMKSTCQLKKPGVQVEIAITEGKE-KGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN 204 (236)
Q Consensus 126 ~~l~~~~~~~~~~~~~v~v~~~v~~G~~-~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~ 204 (236)
..++.+.+.++.. ++++.+....+++ .....++.+...++|-||+.......... . -..+..
T Consensus 20 ~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~--------------~-~~~~~~ 82 (330)
T 3uug_A 20 DDGNNIVKQLQEA--GYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSD--------------V-LKQAGE 82 (330)
T ss_dssp HHHHHHHHHHHHT--TCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHH--------------H-HHHHHH
T ss_pred HHHHHHHHHHHHc--CCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHH--------------H-HHHHHH
Confidence 3445555655544 6776665544443 12345555666789999987653222211 1 233567
Q ss_pred CCCeEEEEeCCCC
Q 037436 205 SSRMTIAVRRKSS 217 (236)
Q Consensus 205 s~~PVlvV~~~~~ 217 (236)
..+||+++-....
T Consensus 83 ~giPvV~~~~~~~ 95 (330)
T 3uug_A 83 QGIKVIAYDRLIR 95 (330)
T ss_dssp TTCEEEEESSCCC
T ss_pred CCCCEEEECCCCC
Confidence 7999999976543
No 135
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=30.90 E-value=2e+02 Score=22.69 Aligned_cols=74 Identities=5% Similarity=-0.055 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhhhCCCceEEEEEEecCC-hHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh
Q 037436 126 EKLHSMKSTCQLKKPGVQVEIAITEGKE-KGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN 204 (236)
Q Consensus 126 ~~l~~~~~~~~~~~~~v~v~~~v~~G~~-~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~ 204 (236)
+.++.+.+.++.. ++++.+....+++ ....+++.+...++|-||+.......... . -..+..
T Consensus 22 ~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~--------------~-~~~~~~ 84 (291)
T 3l49_A 22 KAYQAQIAEIERL--GGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNP--------------W-LQKIND 84 (291)
T ss_dssp HHHHHHHHHHHHT--TCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHH--------------H-HHHHHH
T ss_pred HHHHHHHHHHHHc--CCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH--------------H-HHHHHH
Confidence 4455566666644 6666655444332 12456666667899999987542111111 1 233556
Q ss_pred CCCeEEEEeCCC
Q 037436 205 SSRMTIAVRRKS 216 (236)
Q Consensus 205 s~~PVlvV~~~~ 216 (236)
..+||+++-...
T Consensus 85 ~~iPvV~~~~~~ 96 (291)
T 3l49_A 85 AGIPLFTVDTAT 96 (291)
T ss_dssp TTCCEEEESCCC
T ss_pred CCCcEEEecCCC
Confidence 789999987654
No 136
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=30.86 E-value=1.6e+02 Score=25.63 Aligned_cols=77 Identities=8% Similarity=0.034 Sum_probs=45.8
Q ss_pred CHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHHH
Q 037436 78 SLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPI 157 (236)
Q Consensus 78 s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~~ 157 (236)
...+++.+++|.++|.+....|+++|=.. .. + ...-..+. +.+.. ..+|+|.++..++.. .
T Consensus 164 ~~~~eRiar~AFe~A~~rrkkVt~v~KaN---vl------k-~~~lf~~~---~~eva-~eypdI~~~~~~vD~-----~ 224 (358)
T 1a05_A 164 EDEIRRIAHVAFRAAQGRRKQLCSVDKAN---VL------E-TTRLWREV---VTEVA-RDYPDVRLSHMYVDN-----A 224 (358)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTT---TC------H-HHHHHHHH---HHHHG-GGCTTSEEEEEEHHH-----H
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECCc---cc------c-cchhHHHH---HHHHH-HHCCCceEEeeeHHH-----H
Confidence 46778899999999988877888887533 22 1 11111122 23333 348888888766542 2
Q ss_pred HHHHHH-HCCCCEEEEc
Q 037436 158 IVEEAK-RQNVSLLVLG 173 (236)
Q Consensus 158 I~~~a~-~~~~DLLVmG 173 (236)
..+.++ -.+.|+||+.
T Consensus 225 ~mqlv~~P~~FDVivt~ 241 (358)
T 1a05_A 225 AMQLIRAPAQFDVLLTG 241 (358)
T ss_dssp HHHHHHCGGGCSEEEEC
T ss_pred HHHHHhCCCcccEEEec
Confidence 233333 3678888875
No 137
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=30.71 E-value=1.5e+02 Score=26.00 Aligned_cols=77 Identities=6% Similarity=0.073 Sum_probs=46.1
Q ss_pred CHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHHH
Q 037436 78 SLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPI 157 (236)
Q Consensus 78 s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~~ 157 (236)
...+++.+++|.++|.+....|+++|=-- .. . .. .-..+. +.+..+ .+|+|+++..++.. .
T Consensus 178 r~~~eRIar~AFe~A~~rrkkVT~v~KaN---vl--~-~~----glf~~~---~~eva~-eypdV~~~~~~VD~-----~ 238 (375)
T 3vmk_A 178 RKEIRRIAKIAFESAQGRRKKVTSVDKAN---VL--A-CS----VLWREV---VEEVAK-DYPDVELEHIYIDN-----A 238 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTT---TC--H-HH----HHHHHH---HHHHHT-TCTTSEEEEEEHHH-----H
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEECch---hh--h-hh----hHHHHH---HHHHHH-HCCCceEeeeeHHH-----H
Confidence 46778899999999988888888887422 22 0 11 111122 233323 47889888776642 2
Q ss_pred HHHHH-HHCCCCEEEEc
Q 037436 158 IVEEA-KRQNVSLLVLG 173 (236)
Q Consensus 158 I~~~a-~~~~~DLLVmG 173 (236)
..+.+ +-.+.|+||+.
T Consensus 239 am~lv~~P~~FDViVt~ 255 (375)
T 3vmk_A 239 TMQLLRRPNEFDVMLCS 255 (375)
T ss_dssp HHHHHHCGGGCSEEEEC
T ss_pred HHHHHhCcccCcEEEEC
Confidence 22333 23678888876
No 138
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=30.63 E-value=1.4e+02 Score=20.94 Aligned_cols=49 Identities=4% Similarity=-0.071 Sum_probs=30.6
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~~ 216 (236)
....++.+++..+|+||+...-... .++ .+.+.+-... .+|++++-...
T Consensus 40 ~~~a~~~l~~~~~dlii~D~~l~~~-~g~------------~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 40 AGEAYRLYRETTPDIVVMDLTLPGP-GGI------------EATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp HHHHHHHHHTTCCSEEEECSCCSSS-CHH------------HHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHHHHHhcCCCCEEEEecCCCCC-CHH------------HHHHHHHHhCCCCeEEEEECCC
Confidence 4667778888899999998764321 111 1334444443 58888886543
No 139
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=30.54 E-value=2.1e+02 Score=24.78 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=22.5
Q ss_pred CCCCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEe
Q 037436 65 ERYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIA 106 (236)
Q Consensus 65 ~~~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~ 106 (236)
.||+++|||+ +.+.-+...+ .-|++.+-++++++...
T Consensus 3 ~m~~~kiLI~-g~g~~a~~i~----~aa~~~G~~~v~v~~~~ 39 (446)
T 3ouz_A 3 AMEIKSILIA-NRGEIALRAL----RTIKEMGKKAICVYSEA 39 (446)
T ss_dssp TTCCCEEEEC-CCHHHHHHHH----HHHHHTTCEEEEEEEGG
T ss_pred ccccceEEEE-CCCHHHHHHH----HHHHHcCCEEEEEEcCc
Confidence 4789999994 4444333333 33355677877776544
No 140
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=30.33 E-value=1.4e+02 Score=20.68 Aligned_cols=50 Identities=14% Similarity=0.010 Sum_probs=30.5
Q ss_pred HHHHHHHHHH-CCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 155 GPIIVEEAKR-QNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~-~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
+...++.+++ ..+|+||+...-.....++ .+.+.+-++..+|++++-...
T Consensus 38 ~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~------------~~~~~l~~~~~~~ii~ls~~~ 88 (140)
T 3h5i_A 38 GEAAVEKVSGGWYPDLILMDIELGEGMDGV------------QTALAIQQISELPVVFLTAHT 88 (140)
T ss_dssp HHHHHHHHHTTCCCSEEEEESSCSSSCCHH------------HHHHHHHHHCCCCEEEEESSS
T ss_pred hHHHHHHHhcCCCCCEEEEeccCCCCCCHH------------HHHHHHHhCCCCCEEEEECCC
Confidence 4555666665 7899999997642111111 133445445679999987654
No 141
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=30.22 E-value=1.3e+02 Score=20.38 Aligned_cols=48 Identities=10% Similarity=0.012 Sum_probs=30.9
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh---CCCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN---SSRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~---s~~PVlvV~~~ 215 (236)
....++.+++..+|+||+...-... .++ .+.+.+-+. ..+|++++...
T Consensus 36 ~~~a~~~l~~~~~dlvi~d~~l~~~-~g~------------~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 36 GASGLQQALAHPPDVLISDVNMDGM-DGY------------ALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HHHHHHHHHHSCCSEEEECSSCSSS-CHH------------HHHHHHHHSTTTTTCCEEEEESC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCC-CHH------------HHHHHHHhCCccCCCCEEEEeCC
Confidence 5677788888999999999764321 111 133444443 25899998764
No 142
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=30.11 E-value=1.2e+02 Score=20.20 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=29.8
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh-CCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN-SSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~-s~~PVlvV~~~~ 216 (236)
+...++.+++..+|+|++...-... .++ .+.+.+-+. ..+|++++....
T Consensus 36 ~~~a~~~~~~~~~dlvl~D~~l~~~-~g~------------~~~~~l~~~~~~~~ii~~s~~~ 85 (124)
T 1srr_A 36 GLQALDIVTKERPDLVLLDMKIPGM-DGI------------EILKRMKVIDENIRVIIMTAYG 85 (124)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCTTC-CHH------------HHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHHHHhccCCCEEEEecCCCCC-CHH------------HHHHHHHHhCCCCCEEEEEccC
Confidence 4566677777889999998753221 111 133444443 358999886543
No 143
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=30.06 E-value=2.1e+02 Score=22.76 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=54.5
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEE
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEI 146 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 146 (236)
+..+|.|-+.++...-.+|-.+.. ...+.+|.+| +..+... ..+.++.. ++.+-.
T Consensus 11 ~~~ri~vl~SG~gsnl~all~~~~--~~~~~eI~~V--is~~~a~-------------------~~~~A~~~--gIp~~~ 65 (215)
T 3da8_A 11 APARLVVLASGTGSLLRSLLDAAV--GDYPARVVAV--GVDRECR-------------------AAEIAAEA--SVPVFT 65 (215)
T ss_dssp SSEEEEEEESSCCHHHHHHHHHSS--TTCSEEEEEE--EESSCCH-------------------HHHHHHHT--TCCEEE
T ss_pred CCcEEEEEEeCChHHHHHHHHHHh--ccCCCeEEEE--EeCCchH-------------------HHHHHHHc--CCCEEE
Confidence 456899998887666666655542 1334566555 4322110 12233322 565543
Q ss_pred EEEec-CCh---HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhcc
Q 037436 147 AITEG-KEK---GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWS 188 (236)
Q Consensus 147 ~v~~G-~~~---~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~ 188 (236)
.-... ..+ .+.+++..++.++|++|+....+=....+|..|.
T Consensus 66 ~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~~iL~~~~l~~~~ 111 (215)
T 3da8_A 66 VRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFY 111 (215)
T ss_dssp CCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECCSCCCHHHHHHHT
T ss_pred eCcccccchhhhhHHHHHHHHhhCCCEEEEcCchhhCCHHHHhhcc
Confidence 31111 111 2578899999999999998876544445555553
No 144
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=29.87 E-value=57 Score=22.91 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=24.3
Q ss_pred HHHHHHhhhhCCCceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCc
Q 037436 129 HSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSI 179 (236)
Q Consensus 129 ~~~~~~~~~~~~~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~ 179 (236)
+.+++.++.. ++++++....-.. ... .+ .++|++++|..-+..
T Consensus 21 ~k~~~~~~~~--gi~~~i~a~~~~~-~~~---~~--~~~Dvil~~pqv~~~ 63 (106)
T 1e2b_A 21 SKMRAQAEKY--EVPVIIEAFPETL-AGE---KG--QNADVVLLGPQIAYM 63 (106)
T ss_dssp HHHHHHHHHS--CCSEEEEEECSSS-TTH---HH--HHCSEEEECTTSGGG
T ss_pred HHHHHHHHHC--CCCeEEEEecHHH-HHh---hc--cCCCEEEEccchhhh
Confidence 3455555544 7777766554333 222 23 348999999765433
No 145
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=29.82 E-value=1.3e+02 Score=20.46 Aligned_cols=50 Identities=10% Similarity=-0.019 Sum_probs=30.7
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
....++.+++..+|+||+...-.+...++ .+.+.+-....+|++++-...
T Consensus 43 ~~~a~~~~~~~~~dlii~d~~~~~~~~g~------------~~~~~l~~~~~~~ii~ls~~~ 92 (140)
T 3cg0_A 43 GEEAVRCAPDLRPDIALVDIMLCGALDGV------------ETAARLAAGCNLPIIFITSSQ 92 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCCSSSCHH------------HHHHHHHHHSCCCEEEEECCC
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCCHH------------HHHHHHHhCCCCCEEEEecCC
Confidence 45667777778899999997642111111 133444444568999886543
No 146
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=29.78 E-value=1.5e+02 Score=20.97 Aligned_cols=49 Identities=10% Similarity=-0.014 Sum_probs=31.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh---CCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN---SSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~---s~~PVlvV~~~~ 216 (236)
+...++.+++..+|+||+...-... .++ .+.+.+-.. ..+|++++-...
T Consensus 40 ~~~al~~l~~~~~dlii~D~~l~~~-~g~------------~~~~~lr~~~~~~~~pii~~s~~~ 91 (154)
T 3gt7_A 40 GREAVRFLSLTRPDLIISDVLMPEM-DGY------------ALCRWLKGQPDLRTIPVILLTILS 91 (154)
T ss_dssp HHHHHHHHTTCCCSEEEEESCCSSS-CHH------------HHHHHHHHSTTTTTSCEEEEECCC
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCC-CHH------------HHHHHHHhCCCcCCCCEEEEECCC
Confidence 5677788888999999999763321 111 133444433 358898887543
No 147
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=29.75 E-value=1.1e+02 Score=25.18 Aligned_cols=141 Identities=10% Similarity=0.018 Sum_probs=88.2
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCC----chhHHHHHHHHHHHHHHHHHHHHhhhhCCCc
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQ----VKETKGKKLYLRAYEKLHSMKSTCQLKKPGV 142 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 142 (236)
.....=|+..+.-.....+..++.+|++.+-.| .-|.-...... ...-..+++.......+-.++..|+.. +.
T Consensus 33 ~VtSANIACGfHAGDp~~M~~Tv~lA~~~gV~I-GAHPgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~~--G~ 109 (252)
T 2x5e_A 33 LVDQANLACGFHAGDPLTMRRAVELAVRHGVSI-GAHPAYPDLSGFGRRSLACSAEEVHAMVLYQIGALDAFCRSL--GT 109 (252)
T ss_dssp GCSEEEEECSSSSCCHHHHHHHHHHHHHTTCEE-EEECCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred hhhhhhhhccccCCCHHHHHHHHHHHHHcCCee-ecCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--CC
Confidence 345556677776667778889999998876544 45665422221 112334555555556666777777754 66
Q ss_pred eEEEEEEec---------CChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEE-
Q 037436 143 QVEIAITEG---------KEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAV- 212 (236)
Q Consensus 143 ~v~~~v~~G---------~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV- 212 (236)
++...=-.| ...+.+|++.++..+.+|+++|.. + .-||...+..+...+|++.-
T Consensus 110 ~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~-------~---------~~gs~~~~~A~~~Gl~~~~E~ 173 (252)
T 2x5e_A 110 QVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLA-------L---------ADNGRELELADEADVPLLFEA 173 (252)
T ss_dssp CCCEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEEC-------C---------SCCHHHHHHHHHHTCCEEEEE
T ss_pred EeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEEeC-------C---------CCCCHHHHHHHHcCCcEEEEE
Confidence 655443333 224789999999999999999933 0 12556677778888887754
Q ss_pred -eCCCCCCCceeeec
Q 037436 213 -RRKSSKLGGYLITT 226 (236)
Q Consensus 213 -~~~~~~~~~~li~t 226 (236)
-+..=..+|-|++.
T Consensus 174 FADR~Y~~dG~LvpR 188 (252)
T 2x5e_A 174 FADRAYLPDGRLAPR 188 (252)
T ss_dssp ESSBCBCTTSSBCCT
T ss_pred eeccccCCCCCEecC
Confidence 33333445666654
No 148
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=29.69 E-value=1.4e+02 Score=20.58 Aligned_cols=49 Identities=6% Similarity=0.026 Sum_probs=29.4
Q ss_pred HHHHHHHHH--HCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCCC
Q 037436 155 GPIIVEEAK--RQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~--~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~~ 216 (236)
....++.++ ...+|+||+...-... .++ .+.+.+-+.. .+|++++-...
T Consensus 36 ~~~a~~~~~~~~~~~dlvi~d~~l~~~-~g~------------~~~~~l~~~~~~~~ii~ls~~~ 87 (143)
T 3jte_A 36 STEGLRIFTENCNSIDVVITDMKMPKL-SGM------------DILREIKKITPHMAVIILTGHG 87 (143)
T ss_dssp HHHHHHHHHHTTTTCCEEEEESCCSSS-CHH------------HHHHHHHHHCTTCEEEEEECTT
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCCCC-cHH------------HHHHHHHHhCCCCeEEEEECCC
Confidence 455566666 5789999999764321 111 1334444444 48998887654
No 149
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=29.57 E-value=1.3e+02 Score=22.87 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
+...++.+++..+|+||+...-... .++ .+.+.+-....+|++++-..
T Consensus 37 ~~~al~~~~~~~~dlvllD~~l~~~-~g~------------~~~~~l~~~~~~~ii~lt~~ 84 (230)
T 2oqr_A 37 GPAALAEFDRAGADIVLLDLMLPGM-SGT------------DVCKQLRARSSVPVIMVTAR 84 (230)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCSSS-CHH------------HHHHHHHHHCSCSEEEEECC
T ss_pred HHHHHHHHhccCCCEEEEECCCCCC-CHH------------HHHHHHHcCCCCCEEEEeCC
Confidence 4566677777889999998763221 111 13345544556899888643
No 150
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=29.49 E-value=1.2e+02 Score=26.02 Aligned_cols=78 Identities=12% Similarity=0.027 Sum_probs=45.7
Q ss_pred CHhHHHHHHHHHHhhccC-CCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHH
Q 037436 78 SLDAKGALEWALSHTVQC-QDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGP 156 (236)
Q Consensus 78 s~~s~~al~~A~~la~~~-~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~ 156 (236)
...+++.+++|.++|.+. ..+|+++|=.. ... .... -..+.. .+..+ .+|+|.++..++..
T Consensus 143 ~~~~eRiar~AF~~A~~r~rkkvt~v~KaN---vlk--~t~g----lf~~~~---~eva~-eyp~I~~~~~~vD~----- 204 (333)
T 1x0l_A 143 KKASERIGRAALRIAEGRPRKTLHIAHKAN---VLP--LTQG----LFLDTV---KEVAK-DFPLVNVQDIIVDN----- 204 (333)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCEEEEEECTT---TCT--THHH----HHHHHH---HHHHT-TCTTSEEEEEEHHH-----
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEecCc---cch--hhhH----HHHHHH---HHHHH-HCCCceEEEEEHHH-----
Confidence 567889999999999987 56888887432 220 0111 111222 22222 47888888776542
Q ss_pred HHHHHHH-HCCCCEEEEc
Q 037436 157 IIVEEAK-RQNVSLLVLG 173 (236)
Q Consensus 157 ~I~~~a~-~~~~DLLVmG 173 (236)
...+.++ -.+.|+||+.
T Consensus 205 ~~m~lv~~P~~FDVivt~ 222 (333)
T 1x0l_A 205 CAMQLVMRPERFDVIVTT 222 (333)
T ss_dssp HHHHHHHCGGGCSEEEEC
T ss_pred HHHHHhhCcccceEEEEc
Confidence 2233332 3678888875
No 151
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=29.32 E-value=1.8e+02 Score=22.68 Aligned_cols=81 Identities=9% Similarity=0.030 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHHHHHH
Q 037436 81 AKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIVE 160 (236)
Q Consensus 81 s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~~I~~ 160 (236)
+...++.++++|...++..+++|.-..+... ....++..+...+.+.++.+.++.. ++.+-++-..+.. ...+.+
T Consensus 74 ~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~--~~~~~~~~~~~~~~l~~l~~~a~~~--gv~l~lEn~~~~~-~~~~~~ 148 (254)
T 3ayv_A 74 TLRRLLFGLDRAAELGADRAVFHSGIPHGRT--PEEALERALPLAEALGLVVRRARTL--GVRLLLENSHEPH-PEALRP 148 (254)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCTTCC--HHHHHHTHHHHHHHTHHHHHHHHHH--TCEEEEECSSCSS-GGGTHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCCCCcccc--cccHHHHHHHHHHHHHHHHHHHhhc--CCEEEEcCCCCCC-HHHHHH
Confidence 3467888999999999998888854322111 1112222334445555555555544 7776666554443 455566
Q ss_pred HHHHCC
Q 037436 161 EAKRQN 166 (236)
Q Consensus 161 ~a~~~~ 166 (236)
++++.+
T Consensus 149 l~~~v~ 154 (254)
T 3ayv_A 149 VLEAHA 154 (254)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 665543
No 152
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=29.06 E-value=1.3e+02 Score=20.23 Aligned_cols=49 Identities=8% Similarity=0.036 Sum_probs=29.8
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~~ 216 (236)
+...++.+++..+|+||+...-... .++ .+.+.+-+.. .+|++++....
T Consensus 40 ~~~a~~~l~~~~~dlvi~d~~l~~~-~g~------------~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 40 GVDALELLGGFTPDLMICDIAMPRM-NGL------------KLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp HHHHHHHHTTCCCSEEEECCC------CH------------HHHHHHHHTTCCCCEEEEECCC
T ss_pred HHHHHHHHhcCCCCEEEEecCCCCC-CHH------------HHHHHHHhcCCCCCEEEEEcCC
Confidence 5677788888999999999763221 111 1334444443 48898886654
No 153
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=28.88 E-value=2.2e+02 Score=22.75 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhhCCCceEEEEEEecCC-hHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC
Q 037436 127 KLHSMKSTCQLKKPGVQVEIAITEGKE-KGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS 205 (236)
Q Consensus 127 ~l~~~~~~~~~~~~~v~v~~~v~~G~~-~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s 205 (236)
.+..+++.++.. ++++.+....++. ....+++.+...++|-||+........... -..+...
T Consensus 20 ~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~---------------~~~~~~~ 82 (313)
T 3m9w_A 20 DRDIFVKKAESL--GAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNV---------------VKEAKQE 82 (313)
T ss_dssp HHHHHHHHHHHT--SCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHH---------------HHHHHTT
T ss_pred HHHHHHHHHHHc--CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHH---------------HHHHHHC
Confidence 444455555543 6666655444333 123566777778999999876543322221 2334677
Q ss_pred CCeEEEEeCCCC
Q 037436 206 SRMTIAVRRKSS 217 (236)
Q Consensus 206 ~~PVlvV~~~~~ 217 (236)
.+||+++-....
T Consensus 83 ~iPvV~~~~~~~ 94 (313)
T 3m9w_A 83 GIKVLAYDRMIN 94 (313)
T ss_dssp TCEEEEESSCCT
T ss_pred CCeEEEECCcCC
Confidence 899999976543
No 154
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=28.67 E-value=1.1e+02 Score=26.62 Aligned_cols=78 Identities=6% Similarity=-0.010 Sum_probs=45.2
Q ss_pred CHhHHHHHHHHHHhhccCCC-EEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHH
Q 037436 78 SLDAKGALEWALSHTVQCQD-TIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGP 156 (236)
Q Consensus 78 s~~s~~al~~A~~la~~~~~-~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~ 156 (236)
...+++.+++|.++|.+.+. +|+++|=.. .. ...... ..+.. .+..+ .+|+|.++..++..
T Consensus 165 ~~~~eRIar~AFe~A~~r~~kkVt~v~KaN---vl--k~s~gl----f~~~~---~eva~-eypdv~~~~~~vD~----- 226 (364)
T 3flk_A 165 RRGVDRILKYAFDLAEKRERKHVTSATKSN---GM--AISMPY----WDKRT---EAMAA-HYPHVSWDKQHIDI----- 226 (364)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCEEEEEECTT---TS--TTHHHH----HHHHH---HHHHT-TCTTCEEEEEEHHH-----
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEECcc---hh--hhHHHH----HHHHH---HHHHH-HCCCceEEeeEHHH-----
Confidence 46788899999999988765 688887422 22 001111 11222 22222 37888888776642
Q ss_pred HHHHHHH-HCCCCEEEEc
Q 037436 157 IIVEEAK-RQNVSLLVLG 173 (236)
Q Consensus 157 ~I~~~a~-~~~~DLLVmG 173 (236)
...+.++ -.+.|+||+.
T Consensus 227 ~am~lv~~P~~FDVivt~ 244 (364)
T 3flk_A 227 LCARFVLQPERFDVVVAS 244 (364)
T ss_dssp HHHHHHHCGGGCSEEEEC
T ss_pred HHHHHHhCcccCcEEEec
Confidence 2223332 3678888876
No 155
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=28.40 E-value=2e+02 Score=24.05 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=15.5
Q ss_pred CceEEEEEEecCChHHHHHHHHHHCCCCEEEEc
Q 037436 141 GVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLG 173 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG 173 (236)
++++.+...........+.+.+...++|+||+.
T Consensus 57 g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~ 89 (332)
T 2bon_A 57 GMTIHVRVTWEKGDAARYVEEARKFGVATVIAG 89 (332)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEE
T ss_pred CCcEEEEEecCcchHHHHHHHHHhcCCCEEEEE
Confidence 566655544432213344444434567765543
No 156
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=28.37 E-value=1.2e+02 Score=22.52 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=22.7
Q ss_pred CceEEEEEEecC-ChHHHHHHHHHHCCCCEEEEccCCCC
Q 037436 141 GVQVEIAITEGK-EKGPIIVEEAKRQNVSLLVLGQRRKS 178 (236)
Q Consensus 141 ~v~v~~~v~~G~-~~~~~I~~~a~~~~~DLLVmG~~~~s 178 (236)
++++++.-+... . ...+.+.+ .++|.||+|+....
T Consensus 33 g~~v~~~~~~~~~~-~~~~~~~~--~~~d~ii~Gspty~ 68 (159)
T 3fni_A 33 GVGVDVVDLGAAVD-LQELRELV--GRCTGLVIGMSPAA 68 (159)
T ss_dssp TCEEEEEESSSCCC-HHHHHHHH--HTEEEEEEECCBTT
T ss_pred CCeEEEEECcCcCC-HHHHHHHH--HhCCEEEEEcCcCC
Confidence 676665544444 4 45555444 45899999998764
No 157
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=28.37 E-value=95 Score=23.35 Aligned_cols=27 Identities=7% Similarity=0.078 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHHCCCCEEEEccCCCCc
Q 037436 152 KEKGPIIVEEAKRQNVSLLVLGQRRKSI 179 (236)
Q Consensus 152 ~~~~~~I~~~a~~~~~DLLVmG~~~~s~ 179 (236)
.+ .+.|++.+++.++|+|.+...-...
T Consensus 56 ~p-~e~lv~aa~~~~~diV~lS~~~~~~ 82 (161)
T 2yxb_A 56 QT-PEQVAMAAVQEDVDVIGVSILNGAH 82 (161)
T ss_dssp CC-HHHHHHHHHHTTCSEEEEEESSSCH
T ss_pred CC-HHHHHHHHHhcCCCEEEEEeechhh
Confidence 35 6899999999999999998865443
No 158
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=28.35 E-value=1.5e+02 Score=20.54 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=29.3
Q ss_pred HHHHHHHHHHC-CCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeC
Q 037436 155 GPIIVEEAKRQ-NVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRR 214 (236)
Q Consensus 155 ~~~I~~~a~~~-~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~ 214 (236)
+...++.+++. .+|+||+...-... .++ .+.+.+-+..++|++++--
T Consensus 48 ~~~al~~l~~~~~~dlvilD~~l~~~-~g~------------~~~~~lr~~~~~~iiil~~ 95 (145)
T 3kyj_B 48 GQEALDKLAAQPNVDLILLDIEMPVM-DGM------------EFLRHAKLKTRAKICMLSS 95 (145)
T ss_dssp HHHHHHHHHHCTTCCEEEECTTSCCC-TTC------------HHHHHHHHHCCCEEC-CBS
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCCC-CHH------------HHHHHHHhcCCCCeEEEEE
Confidence 45667777777 89999998763221 111 2445555566788888764
No 159
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=28.21 E-value=2.2e+02 Score=22.35 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=32.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
+...++.+++..+|+||+...-.. ..++ .+.+.+-+...+|++++-...
T Consensus 70 ~~~al~~~~~~~~DlvllD~~lp~-~~G~------------~l~~~lr~~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 70 AMNGLIKAREDHPDLILLDLGLPD-FDGG------------DVVQRLRKNSALPIIVLTARD 118 (249)
T ss_dssp HHHHHHHHHHSCCSEEEEECCSCH-HHHH------------HHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCC-CCHH------------HHHHHHHcCCCCCEEEEECCC
Confidence 566677888899999999876322 2222 234555555568999987654
No 160
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=28.11 E-value=2.3e+02 Score=22.55 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhhhCCCceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh
Q 037436 125 YEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN 204 (236)
Q Consensus 125 ~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~ 204 (236)
.+.++.+.+.+... ++.+.+...........+++.+...++|-||+....... ..-..+..
T Consensus 26 ~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-----------------~~~~~l~~ 86 (294)
T 3qk7_A 26 LEMISWIGIELGKR--GLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED-----------------FRLQYLQK 86 (294)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC-----------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh-----------------HHHHHHHh
Confidence 34555566666644 677666655433325678888888999999987553221 11234567
Q ss_pred CCCeEEEEeCC
Q 037436 205 SSRMTIAVRRK 215 (236)
Q Consensus 205 s~~PVlvV~~~ 215 (236)
..+||+++-..
T Consensus 87 ~~iPvV~~~~~ 97 (294)
T 3qk7_A 87 QNFPFLALGRS 97 (294)
T ss_dssp TTCCEEEESCC
T ss_pred CCCCEEEECCC
Confidence 78999998765
No 161
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=27.89 E-value=1.4e+02 Score=20.04 Aligned_cols=50 Identities=8% Similarity=0.012 Sum_probs=32.1
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh---CCCeEEEEeCCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN---SSRMTIAVRRKSS 217 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~---s~~PVlvV~~~~~ 217 (236)
+...++.+++..+|+||+...-... .++ .+.+.+-.. ..+|++++.....
T Consensus 36 ~~~a~~~l~~~~~dlii~D~~l~~~-~g~------------~~~~~l~~~~~~~~~~ii~~s~~~~ 88 (127)
T 3i42_A 36 GTDALHAMSTRGYDAVFIDLNLPDT-SGL------------ALVKQLRALPMEKTSKFVAVSGFAK 88 (127)
T ss_dssp HHHHHHHHHHSCCSEEEEESBCSSS-BHH------------HHHHHHHHSCCSSCCEEEEEECC-C
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCC-CHH------------HHHHHHHhhhccCCCCEEEEECCcc
Confidence 5677788888999999999764321 111 134455443 4589999876543
No 162
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=27.43 E-value=1.6e+02 Score=20.58 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=26.6
Q ss_pred HHHHHHHHHH-CCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCC
Q 037436 155 GPIIVEEAKR-QNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~-~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~ 215 (236)
....++.+++ ..+|+||+...-... .++ .+.+.+-+.. .+|++++...
T Consensus 38 ~~~a~~~l~~~~~~dlvi~d~~l~~~-~g~------------~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 38 VSDALAFLEADNTVDLILLDVNLPDA-EAI------------DGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp HHHHHHHHHTTCCCSEEEECC-------CH------------HHHHHHHHHCTTSEEEEC---
T ss_pred HHHHHHHHhccCCCCEEEEeCCCCCC-chH------------HHHHHHHHhCCCCeEEEEeCC
Confidence 4677777777 899999999763221 111 1334444443 5888888654
No 163
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=26.73 E-value=1.8e+02 Score=20.99 Aligned_cols=60 Identities=7% Similarity=0.019 Sum_probs=37.3
Q ss_pred CceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC--CCeEEEEe
Q 037436 141 GVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS--SRMTIAVR 213 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s--~~PVlvV~ 213 (236)
|.++..- ....+ .+.|++.+++.++|+|++...-...... +..+.+.+-... +++|++=-
T Consensus 31 G~~Vi~l-G~~~p-~e~~v~~a~~~~~d~v~lS~~~~~~~~~-----------~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 31 GFNVVNI-GVLSP-QELFIKAAIETKADAILVSSLYGQGEID-----------CKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp TCEEEEE-EEEEC-HHHHHHHHHHHTCSEEEEEECSSTHHHH-----------HTTHHHHHHHTTCTTCEEEEEE
T ss_pred CCEEEEC-CCCCC-HHHHHHHHHhcCCCEEEEEecCcCcHHH-----------HHHHHHHHHhcCCCCCEEEEEC
Confidence 5555432 22345 6899999999999999999875433322 233555554432 36776643
No 164
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=26.56 E-value=1.7e+02 Score=20.68 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=29.8
Q ss_pred HHHHHHHHHHC--CCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCC
Q 037436 155 GPIIVEEAKRQ--NVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~--~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~ 215 (236)
....++.+++. .+|+||+...-... .++ .+.+.+-+.. .+|++++-..
T Consensus 70 ~~~al~~l~~~~~~~dliilD~~l~~~-~g~------------~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 70 GEEAVIKYKNHYPNIDIVTLXITMPKM-DGI------------TCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp HHHHHHHHHHHGGGCCEEEECSSCSSS-CHH------------HHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHHHhcCCCCCEEEEeccCCCc-cHH------------HHHHHHHhhCCCCcEEEEecc
Confidence 45667777777 89999999764321 111 1334454444 4888888754
No 165
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=26.40 E-value=1.6e+02 Score=20.17 Aligned_cols=49 Identities=10% Similarity=0.092 Sum_probs=31.4
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHH---hCCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQ---NSSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~---~s~~PVlvV~~~~ 216 (236)
....++.+++..+|+||+...-... .++ .+.+.+-+ ...+|++++-...
T Consensus 40 ~~~a~~~l~~~~~dlii~d~~l~~~-~g~------------~~~~~l~~~~~~~~~pii~~s~~~ 91 (142)
T 3cg4_A 40 GGQCIDLLKKGFSGVVLLDIMMPGM-DGW------------DTIRAILDNSLEQGIAIVMLTAKN 91 (142)
T ss_dssp HHHHHHHHHTCCCEEEEEESCCSSS-CHH------------HHHHHHHHTTCCTTEEEEEEECTT
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCC-CHH------------HHHHHHHhhcccCCCCEEEEECCC
Confidence 5677788888899999998764321 111 13344544 2358999986553
No 166
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=26.37 E-value=1.1e+02 Score=21.65 Aligned_cols=48 Identities=8% Similarity=-0.003 Sum_probs=29.8
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~ 215 (236)
....++.++...+|+||+...-... .++ .+.+.+-... .+|++++-..
T Consensus 36 ~~~a~~~l~~~~~dliild~~l~~~-~g~------------~~~~~l~~~~~~~pii~ls~~ 84 (155)
T 1qkk_A 36 ATEALAGLSADFAGIVISDIRMPGM-DGL------------ALFRKILALDPDLPMILVTGH 84 (155)
T ss_dssp HHHHHHTCCTTCCSEEEEESCCSSS-CHH------------HHHHHHHHHCTTSCEEEEECG
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCC-CHH------------HHHHHHHhhCCCCCEEEEECC
Confidence 4667777778899999999764321 111 1334444443 5899888654
No 167
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=26.18 E-value=1.8e+02 Score=21.38 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=22.0
Q ss_pred CceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCCC
Q 037436 141 GVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRKS 178 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~s 178 (236)
++++++.-+.... ...+...+ .++|.||+|+....
T Consensus 29 g~~v~~~~~~~~~-~~~~~~~~--~~~d~ii~Gspty~ 63 (161)
T 3hly_A 29 GVAVEMVDLRAVD-PQELIEAV--SSARGIVLGTPPSQ 63 (161)
T ss_dssp TCCEEEEETTTCC-HHHHHHHH--HHCSEEEEECCBSS
T ss_pred CCeEEEEECCCCC-HHHHHHHH--HhCCEEEEEcCCcC
Confidence 6666655444444 45555444 35899999998763
No 168
>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}
Probab=25.95 E-value=2.7e+02 Score=24.81 Aligned_cols=97 Identities=13% Similarity=0.027 Sum_probs=57.6
Q ss_pred CCCEEEEEecCCHh-HHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEE
Q 037436 67 YGNKVMVVADSSLD-AKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVE 145 (236)
Q Consensus 67 ~~~~ILV~vD~s~~-s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~ 145 (236)
....+.|++|...+ ...+.+++..+..+..+.+..+-+-- +-++....+.++.+++.+..-+++..+-
T Consensus 13 ~~~~l~vaLD~~~~~~~~~~~~a~~~v~~~~~~v~~~Kvg~-----------~lf~~~G~~~v~~L~~~~~~~~~g~~Vf 81 (453)
T 3qw4_B 13 KRSLLCVGLDPRAKTAAAAVEECKRLIEQTHEYAAAYKPNA-----------AFFEFFGAEGWAALSEVIRAVPAGIPVV 81 (453)
T ss_dssp TTCCEEEEECCCCSSHHHHHHHHHHHHHHHGGGCSEEEEBH-----------HHHHTTHHHHHHHHHHHHHTSCTTSCBE
T ss_pred hCCCEEEEeCCCcccccHHHHHHHHHHHHhCCcCcEEEEcH-----------HHHHhcCHHHHHHHHHHHHhhcCCCeEE
Confidence 34569999998652 45567888888888777665554422 1223334455555555544323466665
Q ss_pred EEEEecCChHHHHHHHHH----HCCCCEEEEccC
Q 037436 146 IAITEGKEKGPIIVEEAK----RQNVSLLVLGQR 175 (236)
Q Consensus 146 ~~v~~G~~~~~~I~~~a~----~~~~DLLVmG~~ 175 (236)
.-+-.++- ..+.-.+++ +.++|+|-+-..
T Consensus 82 lDlK~~DI-pnT~~~~a~~~~~~lg~d~vTvh~~ 114 (453)
T 3qw4_B 82 LDAKRGDI-ADTADAYATSAFKHLNAHAITASPY 114 (453)
T ss_dssp EEEEECCC-HHHHHHHHHHHHTTSCCSEEEECST
T ss_pred EEeecCCh-HHHHHHHHHHHHHHcCCCEEEEccc
Confidence 56666665 455544443 367888877443
No 169
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=25.92 E-value=1.4e+02 Score=22.07 Aligned_cols=49 Identities=4% Similarity=-0.056 Sum_probs=30.9
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~~ 216 (236)
+...++.+++..+|+|++...-... .++ .+.+.+-... .+|++++....
T Consensus 40 ~~~al~~~~~~~~dlvl~D~~lp~~-~g~------------~~~~~l~~~~~~~~ii~lt~~~ 89 (184)
T 3rqi_A 40 KDEALKLAGAEKFEFITVXLHLGND-SGL------------SLIAPLCDLQPDARILVLTGYA 89 (184)
T ss_dssp HHHHHHHHTTSCCSEEEECSEETTE-ESH------------HHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHHHHhhCCCCEEEEeccCCCc-cHH------------HHHHHHHhcCCCCCEEEEeCCC
Confidence 5666788888999999998653211 111 1334444433 58999987654
No 170
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=25.90 E-value=87 Score=24.37 Aligned_cols=37 Identities=11% Similarity=-0.156 Sum_probs=27.8
Q ss_pred CCCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEe
Q 037436 66 RYGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIA 106 (236)
Q Consensus 66 ~~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~ 106 (236)
|.+++|+|++.+..+|.-++.++.. .+.+|.++|+..
T Consensus 4 m~~~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~ 40 (203)
T 3k32_A 4 MKLMDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINF 40 (203)
T ss_dssp --CEEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEEC
T ss_pred ccCCeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeC
Confidence 4457899999999999877755533 467899999876
No 171
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=25.55 E-value=2.5e+02 Score=22.16 Aligned_cols=83 Identities=16% Similarity=0.142 Sum_probs=46.1
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCC--ceEE
Q 037436 68 GNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPG--VQVE 145 (236)
Q Consensus 68 ~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--v~v~ 145 (236)
..++.|+.|...- +.+++.+-. .+..+..++|-. .-........++.+++.+ |+ +-.+
T Consensus 5 ~~~livAlD~~~~-~~a~~~~~~----~~~~~~~ikvg~-----------~lf~~~G~~~v~~l~~~~----p~~~iflD 64 (221)
T 3exr_A 5 LPNLQVALDHSNL-KGAITAAVS----VGNEVDVIEAGT-----------VCLLQVGSELVEVLRSLF----PDKIIVAD 64 (221)
T ss_dssp CCEEEEEECCSSH-HHHHHHHHH----HGGGCSEEEECH-----------HHHHHHCTHHHHHHHHHC----TTSEEEEE
T ss_pred CCCEEEEeCCCCH-HHHHHHHHh----hCCCceEEEECH-----------HHHHhcCHHHHHHHHHhC----CCCcEEEE
Confidence 4579999999654 335555444 344566777743 111223344555555532 23 3333
Q ss_pred EEEEecCChHHHHHHHHHHCCCCEEEEc
Q 037436 146 IAITEGKEKGPIIVEEAKRQNVSLLVLG 173 (236)
Q Consensus 146 ~~v~~G~~~~~~I~~~a~~~~~DLLVmG 173 (236)
..+ .+. ..+..+.+.+.++|++.+=
T Consensus 65 lKl--~Di-p~t~~~~~~~~Gad~vtVH 89 (221)
T 3exr_A 65 TKC--ADA-GGTVAKNNAVRGADWMTCI 89 (221)
T ss_dssp EEE--CSC-HHHHHHHHHTTTCSEEEEE
T ss_pred EEe--ecc-HHHHHHHHHHcCCCEEEEe
Confidence 333 344 5666777777888887663
No 172
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=25.42 E-value=1.4e+02 Score=19.59 Aligned_cols=48 Identities=17% Similarity=0.025 Sum_probs=27.7
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 156 PIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 156 ~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
...+.......+|+|++...-... .++ .+.+.+-+...+|++++....
T Consensus 35 ~~~~~~~~~~~~dlvi~D~~l~~~-~g~------------~~~~~l~~~~~~~ii~~s~~~ 82 (121)
T 1zh2_A 35 QRGLLEAATRKPDLIILDLGLPDG-DGI------------EFIRDLRQWSAVPVIVLSARS 82 (121)
T ss_dssp HHHHHHHHHHCCSEEEEESEETTE-EHH------------HHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCC-cHH------------HHHHHHHhCCCCcEEEEECCC
Confidence 444555666789999998653221 111 133444434468888886543
No 173
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=25.37 E-value=1.7e+02 Score=20.09 Aligned_cols=48 Identities=6% Similarity=-0.015 Sum_probs=31.2
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~~ 216 (236)
....++.+++..+|+||+.. -. ...++ .+.+.+-+.. .+|++++-...
T Consensus 37 ~~~a~~~l~~~~~dlvi~d~-~~-~~~g~------------~~~~~l~~~~~~~pii~ls~~~ 85 (142)
T 2qxy_A 37 EQEAFTFLRREKIDLVFVDV-FE-GEESL------------NLIRRIREEFPDTKVAVLSAYV 85 (142)
T ss_dssp HHHHHHHHTTSCCSEEEEEC-TT-THHHH------------HHHHHHHHHCTTCEEEEEESCC
T ss_pred HHHHHHHHhccCCCEEEEeC-CC-CCcHH------------HHHHHHHHHCCCCCEEEEECCC
Confidence 46777888889999999997 32 22222 1334444444 49999986653
No 174
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=25.34 E-value=2.6e+02 Score=22.34 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=23.7
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCchhhhhhhc
Q 037436 156 PIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRW 187 (236)
Q Consensus 156 ~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~ 187 (236)
+.+++..++.++|++|+....+=....+|..|
T Consensus 91 ~~~~~~l~~~~~Dliv~agy~~IL~~~~l~~~ 122 (229)
T 3auf_A 91 AALAERLQAYGVDLVCLAGYMRLVRGPMLTAF 122 (229)
T ss_dssp HHHHHHHHHTTCSEEEESSCCSCCCHHHHHHS
T ss_pred HHHHHHHHhcCCCEEEEcChhHhCCHHHHhhc
Confidence 57889999999999999877653334444444
No 175
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=25.20 E-value=3e+02 Score=23.06 Aligned_cols=96 Identities=10% Similarity=0.067 Sum_probs=55.6
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEE
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEI 146 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 146 (236)
..+||.|-+.++...-.+|-++..- .....+|.+|-... +. +...++ ..++.+..
T Consensus 104 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~I~~Visn~-~~---------------------~~~~A~--~~gIp~~~ 158 (302)
T 3o1l_A 104 QKKRVVLMASRESHCLADLLHRWHS-DELDCDIACVISNH-QD---------------------LRSMVE--WHDIPYYH 158 (302)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHT-TCSCSEEEEEEESS-ST---------------------THHHHH--TTTCCEEE
T ss_pred CCcEEEEEEeCCchhHHHHHHHHHC-CCCCcEEEEEEECc-HH---------------------HHHHHH--HcCCCEEE
Confidence 4568999888877666666666443 23356666655433 11 111223 22565543
Q ss_pred EEEecCCh---HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhc
Q 037436 147 AITEGKEK---GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRW 187 (236)
Q Consensus 147 ~v~~G~~~---~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~ 187 (236)
.-.....+ ...+++..++.++|+||+....+=....+|..|
T Consensus 159 ~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym~IL~~~~l~~~ 202 (302)
T 3o1l_A 159 VPVDPKDKEPAFAEVSRLVGHHQADVVVLARYMQILPPQLCREY 202 (302)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCCSCCCTTHHHHT
T ss_pred cCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhhhhcCHHHHhhh
Confidence 21121111 257999999999999999987653334444444
No 176
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=25.18 E-value=1e+02 Score=28.07 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=28.1
Q ss_pred CEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEe
Q 037436 69 NKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIA 106 (236)
Q Consensus 69 ~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~ 106 (236)
++|+|++.+.-+|.-++..+.+. .+.+|+++|+..
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~G~~v~av~vd~ 265 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---IGDQLVCVLVDT 265 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---HGGGEEEEEECC
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---hCCeEEEEEecc
Confidence 78999999999998777666543 256899999965
No 177
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=25.15 E-value=1.5e+02 Score=22.96 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=29.4
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
+...++.+++..+|+||+...-... .++ .+...+-....+|++++-...
T Consensus 38 ~~~al~~l~~~~~dlvilD~~l~~~-~g~------------~~~~~lr~~~~~~ii~lt~~~ 86 (238)
T 2gwr_A 38 GTQALTAVRELRPDLVLLDLMLPGM-NGI------------DVCRVLRADSGVPIVMLTAKT 86 (238)
T ss_dssp GGGHHHHHHHHCCSEEEEESSCSSS-CHH------------HHHHHHHTTCCCCEEEEEETT
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCC-CHH------------HHHHHHHhCCCCcEEEEeCCC
Confidence 3455667777889999998763221 111 133444444478999886543
No 178
>2kll_A Interleukin-33; beta-trefoil, cytokine, polymorphism, secreted; NMR {Homo sapiens}
Probab=24.80 E-value=25 Score=26.23 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=12.7
Q ss_pred ceeeeccccccccccC
Q 037436 221 GYLITTKRHKNFWLLA 236 (236)
Q Consensus 221 ~~li~t~~~~~fwl~~ 236 (236)
.-++..++.|||||-|
T Consensus 72 ~LmVnlSP~KDf~LHA 87 (161)
T 2kll_A 72 MLMVTLSPTKDFWLHA 87 (161)
T ss_dssp CEEEEEESSSSEEEEE
T ss_pred EEEEEcccccceeEec
Confidence 3478889999999854
No 179
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=24.73 E-value=2.6e+02 Score=23.53 Aligned_cols=89 Identities=11% Similarity=0.173 Sum_probs=47.5
Q ss_pred EEEEEecCCHh--HHHHHHHHHHhhc-cCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEE
Q 037436 70 KVMVVADSSLD--AKGALEWALSHTV-QCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEI 146 (236)
Q Consensus 70 ~ILV~vD~s~~--s~~al~~A~~la~-~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 146 (236)
++++|-.+... ....++....++. .....+.++|... . . ..++..+.+.+.+.. .+++++.
T Consensus 227 ~~i~pgHg~~~~~~~~~~~~~~~~~~~~~~~k~~i~~~S~-~------g-------nT~~la~~i~~~l~~--~g~~v~~ 290 (404)
T 2ohh_A 227 QMIAPSHGQIWTDPMKIIEAYTGWATGMVDERVTVIYDTM-H------G-------STRKMAHAIAEGAMS--EGVDVRV 290 (404)
T ss_dssp SEEECSSSCBBSSHHHHHHHHHHHHTTCCCSEEEEEECCS-S------S-------HHHHHHHHHHHHHHT--TTCEEEE
T ss_pred cEEecCCCccccCHHHHHHHHHHHhccCCCCcEEEEEECC-C------h-------HHHHHHHHHHHHHHh--CCCeEEE
Confidence 45666554211 4555655565554 3556787777543 1 1 223333334444432 2666655
Q ss_pred EEEecCChHHHHHHHHHHCCCCEEEEccCCC
Q 037436 147 AITEGKEKGPIIVEEAKRQNVSLLVLGQRRK 177 (236)
Q Consensus 147 ~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~ 177 (236)
.-+.... ...+.+.. .++|.||+|+...
T Consensus 291 ~~~~~~~-~~~~~~~l--~~~d~iiigsP~y 318 (404)
T 2ohh_A 291 YCLHEDD-RSEIVKDI--LESGAIALGAPTI 318 (404)
T ss_dssp EETTTSC-HHHHHHHH--HTCSEEEEECCEE
T ss_pred EECCCCC-HHHHHHHH--HHCCEEEEECccc
Confidence 5444434 34454444 4699999998754
No 180
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=24.54 E-value=2.8e+02 Score=22.64 Aligned_cols=74 Identities=14% Similarity=0.039 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhhCCCceEEEEEEecCCh--HHHHHHHHHH-CCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHH
Q 037436 126 EKLHSMKSTCQLKKPGVQVEIAITEGKEK--GPIIVEEAKR-QNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCI 202 (236)
Q Consensus 126 ~~l~~~~~~~~~~~~~v~v~~~v~~G~~~--~~~I~~~a~~-~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll 202 (236)
..++.+++.++.. ++++.+....++.. ...|.+.+.. .++|-||+.. ........ -..+
T Consensus 21 ~~~~g~~~~a~~~--g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~~~~~~~~---------------~~~~ 82 (350)
T 3h75_A 21 SYSQFMQAAARDL--GLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN-EQYVAPQI---------------LRLS 82 (350)
T ss_dssp HHHHHHHHHHHHH--TCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-CSSHHHHH---------------HHHH
T ss_pred HHHHHHHHHHHHc--CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-chhhHHHH---------------HHHH
Confidence 4444555555544 67776664444431 1223334443 6999998864 21111111 2345
Q ss_pred HhCCCeEEEEeCCCC
Q 037436 203 QNSSRMTIAVRRKSS 217 (236)
Q Consensus 203 ~~s~~PVlvV~~~~~ 217 (236)
....+||+++-....
T Consensus 83 ~~~giPvV~~~~~~~ 97 (350)
T 3h75_A 83 QGSGIKLFIVNSPLT 97 (350)
T ss_dssp TTSCCEEEEEESCCC
T ss_pred HhCCCcEEEEcCCCC
Confidence 577899999976544
No 181
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.52 E-value=1.4e+02 Score=20.53 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=16.4
Q ss_pred HHHHHHHHHH----------CCCCEEEEccCC
Q 037436 155 GPIIVEEAKR----------QNVSLLVLGQRR 176 (236)
Q Consensus 155 ~~~I~~~a~~----------~~~DLLVmG~~~ 176 (236)
+...++.+++ ..+|+||+...-
T Consensus 41 ~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l 72 (149)
T 1k66_A 41 GDQALDFLYQTGSYCNPDIAPRPAVILLDLNL 72 (149)
T ss_dssp HHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC
T ss_pred HHHHHHHHHhcccccCcccCCCCcEEEEECCC
Confidence 4566666765 789999998763
No 182
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=24.31 E-value=1.7e+02 Score=23.96 Aligned_cols=49 Identities=10% Similarity=0.001 Sum_probs=31.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
+..-++.+++..+|+|++--.=...+.++ .+...+-....+||+++.-.
T Consensus 194 g~eAl~~~~~~~~dlvl~D~~MPd~mdG~------------e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 194 RGEALEAVTRRTPGLVLADIQLADGSSGI------------DAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp HHHHHHHHHHCCCSEEEEESCCTTSCCTT------------TTTHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCCHH------------HHHHHHHhcCCCCEEEEeCC
Confidence 56667788889999999987532112222 12344444448999999754
No 183
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=24.20 E-value=1.7e+02 Score=19.75 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=28.4
Q ss_pred HHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCCC
Q 037436 156 PIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRKS 216 (236)
Q Consensus 156 ~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~~ 216 (236)
...++.+++..+|+|++...-... .++ .+.+.+-+.. .+|++++-...
T Consensus 36 ~~a~~~~~~~~~dlii~d~~l~~~-~g~------------~~~~~l~~~~~~~~ii~~s~~~ 84 (134)
T 3f6c_A 36 GSAVQRVETLKPDIVIIDVDIPGV-NGI------------QVLETLRKRQYSGIIIIVSAKN 84 (134)
T ss_dssp TTHHHHHHHHCCSEEEEETTCSSS-CHH------------HHHHHHHHTTCCSEEEEEECC-
T ss_pred HHHHHHHHhcCCCEEEEecCCCCC-ChH------------HHHHHHHhcCCCCeEEEEeCCC
Confidence 344566677899999999764321 111 1334444444 48888886543
No 184
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=23.72 E-value=1.9e+02 Score=25.06 Aligned_cols=79 Identities=8% Similarity=0.113 Sum_probs=46.1
Q ss_pred CCHhHHHHHHHHHHhhccC-CCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChH
Q 037436 77 SSLDAKGALEWALSHTVQC-QDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKG 155 (236)
Q Consensus 77 ~s~~s~~al~~A~~la~~~-~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~ 155 (236)
.....++.+++|.++|.+. ..+|+++|=.. .. ..... -..+. +.+..+ .+|+|.++..++..
T Consensus 161 T~~~~eRiar~AFe~A~~r~rkkVt~v~KaN---vl--k~sdg----lf~~~---~~eva~-eypdI~~~~~~vD~---- 223 (354)
T 3blx_B 161 TRDASERVIRYAFEYARAIGRPRVIVVHKST---IQ--RLADG----LFVNV---AKELSK-EYPDLTLETELIDN---- 223 (354)
T ss_dssp EHHHHHHHHHHHHHHHHHTTCSEEEEEESCT---TT--CHHHH----HHHHH---HHHHGG-GCTTSEEEEEEHHH----
T ss_pred cHHHHHHHHHHHHHHHHhcCCCeEEEEECCc---ch--HhHHH----HHHHH---HHHHHH-HCCCceEEEEEHHH----
Confidence 3567888999999999887 56788887533 11 00111 11122 233322 48888888776542
Q ss_pred HHHHHHHH-HCCCC--EEEEc
Q 037436 156 PIIVEEAK-RQNVS--LLVLG 173 (236)
Q Consensus 156 ~~I~~~a~-~~~~D--LLVmG 173 (236)
...+.++ -.+.| +||+.
T Consensus 224 -~~m~lv~~P~~FD~~Vivt~ 243 (354)
T 3blx_B 224 -SVLKVVTNPSAYTDAVSVCP 243 (354)
T ss_dssp -HHHHHHHCGGGGTTEEEEEC
T ss_pred -HHHHHhhChhhCCceEEEec
Confidence 2233333 36678 88876
No 185
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=23.64 E-value=1.6e+02 Score=25.40 Aligned_cols=79 Identities=9% Similarity=0.099 Sum_probs=45.7
Q ss_pred CHhHHHHHHHHHHhhccC-CCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHH
Q 037436 78 SLDAKGALEWALSHTVQC-QDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGP 156 (236)
Q Consensus 78 s~~s~~al~~A~~la~~~-~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~ 156 (236)
....++.+++|.++|.+. ..+|+++|=.. .. ...... ..+. +.+..+..+|+|.++..++..
T Consensus 156 ~~~~eRiar~AF~~A~~r~rkkVt~v~KaN---vl--k~sdgl----f~~~---~~eva~~eyp~i~~~~~~vD~----- 218 (349)
T 3blx_A 156 RPKTERIARFAFDFAKKYNRKSVTAVHKAN---IM--KLGDGL----FRNI---ITEIGQKEYPDIDVSSIIVDN----- 218 (349)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECTT---TS--TTHHHH----HHHH---HHHHHHHHCTTSEEEEEEHHH-----
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEeCCc---cc--hhhHHH----HHHH---HHHHHHhhCCCeeEEEeeHHH-----
Confidence 567788999999999887 55788887533 22 001111 1122 222321247888888776642
Q ss_pred HHHHHHH-HCCCCEEEEc
Q 037436 157 IIVEEAK-RQNVSLLVLG 173 (236)
Q Consensus 157 ~I~~~a~-~~~~DLLVmG 173 (236)
...+.++ -.+.|+||+.
T Consensus 219 ~~~qlv~~P~~FDVivt~ 236 (349)
T 3blx_A 219 ASMQAVAKPHQFDVLVTP 236 (349)
T ss_dssp HHHHHHHCGGGCSEEEEC
T ss_pred HHHHHhhCcccccEEEEC
Confidence 2233332 3678888876
No 186
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=23.29 E-value=2.6e+02 Score=21.62 Aligned_cols=85 Identities=13% Similarity=0.048 Sum_probs=40.7
Q ss_pred CEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEE
Q 037436 69 NKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAI 148 (236)
Q Consensus 69 ~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v 148 (236)
.+++++.|+..-. .+++.+-.. ++.+..+.|.. . .........++.+++.+.. ..+-.++++
T Consensus 4 ~~~ilalD~~~~~-~~~~~~~~~----~~~v~~~kv~~--------~---~f~~~G~~~i~~l~~~~p~--~~v~lD~kl 65 (216)
T 1q6o_A 4 PMLQVALDNQTMD-SAYETTRLI----AEEVDIIEVGT--------I---LCVGEGVRAVRDLKALYPH--KIVLADAKI 65 (216)
T ss_dssp CEEEEEECCSSHH-HHHHHHHHH----GGGCSEEEECH--------H---HHHHHCTHHHHHHHHHCTT--SEEEEEEEE
T ss_pred CCeEEEECCCCHH-HHHHHHHHh----cccCCEEEECH--------H---HHHHhCHHHHHHHHHhCCC--CeEEEEEEe
Confidence 5799999996543 244443333 33334445533 0 1122233445555543210 122333333
Q ss_pred EecCChHHHHHHHHHHCCCCEEEEcc
Q 037436 149 TEGKEKGPIIVEEAKRQNVSLLVLGQ 174 (236)
Q Consensus 149 ~~G~~~~~~I~~~a~~~~~DLLVmG~ 174 (236)
.+. ..+..+.+.+.++|+|.+=.
T Consensus 66 --~di-p~t~~~~~~~~Gad~itvh~ 88 (216)
T 1q6o_A 66 --ADA-GKILSRMCFEANADWVTVIC 88 (216)
T ss_dssp --CSC-HHHHHHHHHHTTCSEEEEET
T ss_pred --ccc-HHHHHHHHHhCCCCEEEEec
Confidence 333 45556666667777776644
No 187
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=23.19 E-value=2.9e+02 Score=22.08 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=26.3
Q ss_pred CEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEe
Q 037436 69 NKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIA 106 (236)
Q Consensus 69 ~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~ 106 (236)
.+|+|++.+..+|.-++..+.... ..|.++|+..
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~v~vv~idt 79 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDT 79 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TTCEEEECCC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CCCeEEEecC
Confidence 479999999999998887776663 3577788755
No 188
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=23.15 E-value=1.9e+02 Score=19.94 Aligned_cols=49 Identities=10% Similarity=0.101 Sum_probs=30.1
Q ss_pred HHHHHHHHHH-CCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCCC
Q 037436 155 GPIIVEEAKR-QNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~-~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~~ 216 (236)
.+++....+. ..+|+||+...-.. ..++ .+.+.+-... .+|++++-...
T Consensus 55 ~~~~~~~~~~~~~~dlvi~D~~l~~-~~g~------------~~~~~l~~~~~~~~ii~lt~~~ 105 (146)
T 4dad_A 55 AAQIVQRTDGLDAFDILMIDGAALD-TAEL------------AAIEKLSRLHPGLTCLLVTTDA 105 (146)
T ss_dssp HHHHTTCHHHHTTCSEEEEECTTCC-HHHH------------HHHHHHHHHCTTCEEEEEESCC
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCC-ccHH------------HHHHHHHHhCCCCcEEEEeCCC
Confidence 4566666666 89999999876432 2221 2334454444 48999887643
No 189
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=23.12 E-value=2e+02 Score=24.42 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=32.6
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~~ 216 (236)
+...++.+++..+|+|++...-.. ..++ .+.+.+.+..++|++++-...
T Consensus 38 ~~eAl~~l~~~~pDlVllDi~mp~-~dGl------------ell~~l~~~~p~pVIvlS~~~ 86 (349)
T 1a2o_A 38 PLVARDLIKKFNPDVLTLDVEMPR-MDGL------------DFLEKLMRLRPMPVVMVSSLT 86 (349)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCSS-SCHH------------HHHHHHHHSSCCCEEEEECCT
T ss_pred HHHHHHHHhccCCCEEEEECCCCC-CCHH------------HHHHHHHhcCCCcEEEEECCC
Confidence 456677778889999999875332 1111 244666666779999987543
No 190
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=22.85 E-value=1.2e+02 Score=23.96 Aligned_cols=35 Identities=11% Similarity=-0.046 Sum_probs=26.4
Q ss_pred CEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEE
Q 037436 69 NKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLY 103 (236)
Q Consensus 69 ~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llh 103 (236)
++|++++-++..+..+++..-.+.+..+.+|.++-
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~ 35 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVM 35 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEE
Confidence 37999999999888888777776544377776554
No 191
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=22.72 E-value=1.7e+02 Score=19.16 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=29.7
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~ 215 (236)
+...++..+...+|+|++...-... .++ .+.+.+-+.. .+|++++...
T Consensus 34 ~~~a~~~~~~~~~dlvl~D~~l~~~-~g~------------~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 34 GEEALKKFFSGNYDLVILDIEMPGI-SGL------------EVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp HHHHHHHHHHSCCSEEEECSCCSSS-CHH------------HHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCC-CHH------------HHHHHHHccCCCCeEEEEECC
Confidence 4666777788899999998763221 111 1334444433 4888888654
No 192
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=22.53 E-value=2.5e+02 Score=21.18 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=30.2
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh-CCCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN-SSRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~-s~~PVlvV~~~ 215 (236)
+...++.+++..+|+|++...-... .++ .+...+-.. ..+|++++-..
T Consensus 40 ~~~a~~~~~~~~~dlvllD~~l~~~-~g~------------~~~~~l~~~~~~~~ii~lt~~ 88 (233)
T 1ys7_A 40 GAEALRSATENRPDAIVLDINMPVL-DGV------------SVVTALRAMDNDVPVCVLSAR 88 (233)
T ss_dssp HHHHHHHHHHSCCSEEEEESSCSSS-CHH------------HHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCC-CHH------------HHHHHHHhcCCCCCEEEEEcC
Confidence 4666777888899999998763321 111 133444443 36999998654
No 193
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=22.39 E-value=1.9e+02 Score=19.79 Aligned_cols=49 Identities=6% Similarity=0.030 Sum_probs=30.2
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh---CCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN---SSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~---s~~PVlvV~~~~ 216 (236)
+...++.+++..+|+|++...-.. ..++ .+.+.+-++ ..+|++++....
T Consensus 37 ~~~al~~~~~~~~dlvl~D~~lp~-~~g~------------~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 37 GEEALQQIYKNLPDALICDVLLPG-IDGY------------TLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSS-SCHH------------HHHHHHHHSGGGTTCCEEEEECTT
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCC-CCHH------------HHHHHHHcCCCcCCccEEEEecCC
Confidence 566778888899999999876322 1111 133444332 358888887543
No 194
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=22.36 E-value=3.4e+02 Score=22.63 Aligned_cols=75 Identities=9% Similarity=-0.068 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhhhCCCceEEEEEEecCC-hHHHHHHHHHHCCCCEEEEccCCCCc-h-hhhhhhccCCCcccCcHHHH
Q 037436 124 AYEKLHSMKSTCQLKKPGVQVEIAITEGKE-KGPIIVEEAKRQNVSLLVLGQRRKSI-V-WTLMNRWSSKKKAVGDIADY 200 (236)
Q Consensus 124 ~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~-~~~~I~~~a~~~~~DLLVmG~~~~s~-~-~~l~~~~~~~~~~~gs~~~~ 200 (236)
..+.++.+.+.+.. .+.+-.-+.. .. ..-.+.+.|++.++|-+.+-..-... . ..+ =..-+.
T Consensus 67 r~~vi~~~~~~~~g---rvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l-----------~~~f~~ 131 (314)
T 3d0c_A 67 AKQVATRVTELVNG---RATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGA-----------VEYYRN 131 (314)
T ss_dssp HHHHHHHHHHHHTT---SSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHhCC---CCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHH-----------HHHHHH
Confidence 34455555554432 3555444433 32 12345677788999999888765422 1 222 113356
Q ss_pred HHHhCCCeEEEEe
Q 037436 201 CIQNSSRMTIAVR 213 (236)
Q Consensus 201 ll~~s~~PVlvV~ 213 (236)
+...++.|+++..
T Consensus 132 va~a~~lPiilYn 144 (314)
T 3d0c_A 132 IIEALDAPSIIYF 144 (314)
T ss_dssp HHHHSSSCEEEEE
T ss_pred HHHhCCCCEEEEe
Confidence 7888999999998
No 195
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=22.24 E-value=2.5e+02 Score=21.05 Aligned_cols=48 Identities=8% Similarity=-0.031 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~ 215 (236)
+...++.+++..+|+|++...-... .++ .+...+-... .+|++++...
T Consensus 35 ~~~a~~~~~~~~~dlvllD~~l~~~-~g~------------~~~~~lr~~~~~~~ii~ls~~ 83 (225)
T 1kgs_A 35 GEEGMYMALNEPFDVVILDIMLPVH-DGW------------EILKSMRESGVNTPVLMLTAL 83 (225)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSSS-CHH------------HHHHHHHHTTCCCCEEEEESS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCC-CHH------------HHHHHHHhcCCCCCEEEEeCC
Confidence 4566677788899999998763221 111 1334444443 5899988654
No 196
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=22.10 E-value=2.9e+02 Score=21.66 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhhhCCCceEEEEEEecCC-hHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHH
Q 037436 125 YEKLHSMKSTCQLKKPGVQVEIAITEGKE-KGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQ 203 (236)
Q Consensus 125 ~~~l~~~~~~~~~~~~~v~v~~~v~~G~~-~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~ 203 (236)
.+.++.+.+.++.. ++++.+.....+. ....+++.+...++|-||+...... .-.-..+.
T Consensus 29 ~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-----------------~~~~~~l~ 89 (292)
T 3k4h_A 29 PEVIRGISSFAHVE--GYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN-----------------DRIIQYLH 89 (292)
T ss_dssp HHHHHHHHHHHHHT--TCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-----------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-----------------hHHHHHHH
Confidence 34455566666543 5655443222221 1245677777889999998643211 11123456
Q ss_pred hCCCeEEEEeCCCC
Q 037436 204 NSSRMTIAVRRKSS 217 (236)
Q Consensus 204 ~s~~PVlvV~~~~~ 217 (236)
...+||+++-....
T Consensus 90 ~~~iPvV~~~~~~~ 103 (292)
T 3k4h_A 90 EQNFPFVLIGKPYD 103 (292)
T ss_dssp HTTCCEEEESCCSS
T ss_pred HCCCCEEEECCCCC
Confidence 77899999865543
No 197
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=21.87 E-value=1.8e+02 Score=19.21 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=28.4
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh---CCCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN---SSRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~---s~~PVlvV~~~ 215 (236)
+...++.++...+|+|++...-... .++ .+.+.+-.. ..+|++++...
T Consensus 34 ~~~a~~~~~~~~~dlvi~D~~l~~~-~g~------------~~~~~l~~~~~~~~~~ii~~s~~ 84 (124)
T 1mb3_A 34 GLSALSIARENKPDLILMDIQLPEI-SGL------------EVTKWLKEDDDLAHIPVVAVTAF 84 (124)
T ss_dssp HHHHHHHHHHHCCSEEEEESBCSSS-BHH------------HHHHHHHHSTTTTTSCEEEEC--
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCC-CHH------------HHHHHHHcCccccCCcEEEEECC
Confidence 4566677777889999998763221 111 133444432 35899988654
No 198
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=21.68 E-value=1.9e+02 Score=19.37 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=30.0
Q ss_pred HHHHHHHHHHC-CCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhC-CCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQ-NVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNS-SRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~-~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s-~~PVlvV~~~~ 216 (236)
....++.+++. .+|+||+...-.....++ .+.+.+-... .+|++++-...
T Consensus 38 ~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~------------~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 38 GAKAIEMLKSGAAIDGVVTDIRFCQPPDGW------------QVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp HHHHHHHHHTTCCCCEEEEESCCSSSSCHH------------HHHHHHHHHCTTCCEEEEESSC
T ss_pred HHHHHHHHHcCCCCCEEEEeeeCCCCCCHH------------HHHHHHHhcCCCCCEEEEeCCc
Confidence 46667777776 899999987633211111 1334444443 58999886543
No 199
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=21.64 E-value=1.2e+02 Score=24.14 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=27.3
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEE
Q 037436 68 GNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYV 104 (236)
Q Consensus 68 ~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV 104 (236)
.++|++++-++..+..+++..-.+.+ .+.+|.++-.
T Consensus 4 ~k~IllgvTGaiaa~k~~~ll~~L~~-~g~eV~vv~T 39 (209)
T 3zqu_A 4 PERITLAMTGASGAQYGLRLLDCLVQ-EEREVHFLIS 39 (209)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEC
Confidence 37899999999999988877766644 4777665543
No 200
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=21.51 E-value=1.4e+02 Score=23.24 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=24.7
Q ss_pred CceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCC
Q 037436 141 GVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRR 176 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~ 176 (236)
|.++... ....+ .+.|++.+++.++|+|.+...-
T Consensus 116 G~~v~~L-G~~vp-~~~l~~~~~~~~~d~v~lS~~~ 149 (210)
T 1y80_A 116 GFTVYNL-GVDIE-PGKFVEAVKKYQPDIVGMSALL 149 (210)
T ss_dssp TCEEEEC-CSSBC-HHHHHHHHHHHCCSEEEEECCS
T ss_pred CCEEEEC-CCCCC-HHHHHHHHHHcCCCEEEEeccc
Confidence 5554322 22345 7999999999999999998764
No 201
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=21.43 E-value=3.5e+02 Score=23.78 Aligned_cols=40 Identities=13% Similarity=-0.120 Sum_probs=27.1
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEe
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIA 106 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~ 106 (236)
..++|-+.++.++.....++...+.+.+.+-.|.....++
T Consensus 196 gw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~ 235 (496)
T 3ks9_A 196 NWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIY 235 (496)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEEC
Confidence 4577888777777777777777666666666665544443
No 202
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=21.26 E-value=2.8e+02 Score=22.16 Aligned_cols=65 Identities=9% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhCCCceEEEEEEecCChHHHHHHHHHH---CCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHH
Q 037436 125 YEKLHSMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKR---QNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYC 201 (236)
Q Consensus 125 ~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~~I~~~a~~---~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~l 201 (236)
.++.+.+++.+... +...++.++.+.- .+++....+. .++|+||-. |+++.+|
T Consensus 22 ~~L~~~~~~i~~e~--~~~~~I~vi~~~l-e~av~~a~~~~~~~~~dVIISR---------------------Ggta~~L 77 (225)
T 2pju_A 22 TRLFELFRDISLEF--DHLANITPIQLGF-EKAVTYIRKKLANERCDAIIAA---------------------GSNGAYL 77 (225)
T ss_dssp HHHHHHHHHHHTTT--TTTCEEEEECCCH-HHHHHHHHHHTTTSCCSEEEEE---------------------HHHHHHH
T ss_pred HHHHHHHHHHHHhh--CCCceEEEecCcH-HHHHHHHHHHHhcCCCeEEEeC---------------------ChHHHHH
Q ss_pred HHhCCCeEEEEe
Q 037436 202 IQNSSRMTIAVR 213 (236)
Q Consensus 202 l~~s~~PVlvV~ 213 (236)
-++.++||+-++
T Consensus 78 r~~~~iPVV~I~ 89 (225)
T 2pju_A 78 KSRLSVPVILIK 89 (225)
T ss_dssp HTTCSSCEEEEC
T ss_pred HhhCCCCEEEec
No 203
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=21.22 E-value=2e+02 Score=19.44 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=29.1
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh-CCCeEEEEeCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN-SSRMTIAVRRK 215 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~-s~~PVlvV~~~ 215 (236)
+...++.++...+|+|++...-... .++ .+...+-.. ..+|++++-..
T Consensus 36 ~~~a~~~~~~~~~dlvl~D~~l~~~-~g~------------~~~~~l~~~~~~~~ii~~s~~ 84 (136)
T 1mvo_A 36 GEEALKKAETEKPDLIVLDVMLPKL-DGI------------EVCKQLRQQKLMFPILMLTAK 84 (136)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCSSS-CHH------------HHHHHHHHTTCCCCEEEEECT
T ss_pred HHHHHHHHhhcCCCEEEEecCCCCC-CHH------------HHHHHHHcCCCCCCEEEEECC
Confidence 4566677777889999998763221 111 133444443 35888888654
No 204
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=21.22 E-value=3.2e+02 Score=21.94 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=25.1
Q ss_pred CceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCCC
Q 037436 141 GVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRRK 177 (236)
Q Consensus 141 ~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~~ 177 (236)
|.++...= ...+ .+.|++.+++.++|+|.+...-.
T Consensus 151 G~~Vi~LG-~~vp-~e~l~~~~~~~~~d~V~lS~l~~ 185 (258)
T 2i2x_B 151 GYNVVDLG-RDVP-AEEVLAAVQKEKPIMLTGTALMT 185 (258)
T ss_dssp TCEEEEEE-EECC-SHHHHHHHHHHCCSEEEEECCCT
T ss_pred CCEEEECC-CCCC-HHHHHHHHHHcCCCEEEEEeecc
Confidence 55554332 2345 58999999999999999987543
No 205
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=21.14 E-value=2e+02 Score=19.57 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=16.3
Q ss_pred HHHHHHHHHH------CCCCEEEEccCC
Q 037436 155 GPIIVEEAKR------QNVSLLVLGQRR 176 (236)
Q Consensus 155 ~~~I~~~a~~------~~~DLLVmG~~~ 176 (236)
....++.+++ ..+|+||+...-
T Consensus 42 ~~~a~~~l~~~~~~~~~~~dlii~D~~l 69 (143)
T 2qvg_A 42 GNQALDMLYGRNKENKIHPKLILLDINI 69 (143)
T ss_dssp HHHHHHHHHTCTTCCCCCCSEEEEETTC
T ss_pred HHHHHHHHHhcccccCCCCCEEEEecCC
Confidence 4566677765 789999998753
No 206
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=21.08 E-value=1.8e+02 Score=19.04 Aligned_cols=49 Identities=6% Similarity=-0.094 Sum_probs=30.1
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh-CCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN-SSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~-s~~PVlvV~~~~ 216 (236)
+...++.+++..+|++++...-... .++ .+.+.+-.. ..+|++++-...
T Consensus 33 ~~~a~~~~~~~~~dlil~D~~l~~~-~g~------------~~~~~l~~~~~~~~ii~~s~~~ 82 (121)
T 2pl1_A 33 AKEADYYLNEHIPDIAIVDLGLPDE-DGL------------SLIRRWRSNDVSLPILVLTARE 82 (121)
T ss_dssp HHHHHHHHHHSCCSEEEECSCCSSS-CHH------------HHHHHHHHTTCCSCEEEEESCC
T ss_pred HHHHHHHHhccCCCEEEEecCCCCC-CHH------------HHHHHHHhcCCCCCEEEEecCC
Confidence 4666777888899999998753221 111 133444433 358998886543
No 207
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=21.08 E-value=2.7e+02 Score=21.46 Aligned_cols=75 Identities=12% Similarity=0.012 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhhhCCCceEEEEEEe--cCC-hHHHHHHHHHHCC-CCEEEEccCCCCchhhhhhhccCCCcccCcHHHHH
Q 037436 126 EKLHSMKSTCQLKKPGVQVEIAITE--GKE-KGPIIVEEAKRQN-VSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYC 201 (236)
Q Consensus 126 ~~l~~~~~~~~~~~~~v~v~~~v~~--G~~-~~~~I~~~a~~~~-~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~l 201 (236)
+.++.+++.+... ++++.+.... ++. .....++.+...+ +|-||+........... -..
T Consensus 17 ~~~~gi~~~~~~~--g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~---------------~~~ 79 (276)
T 3ksm_A 17 QVYLGAQKAADEA--GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPS---------------VAQ 79 (276)
T ss_dssp HHHHHHHHHHHHH--TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHH---------------HHH
T ss_pred HHHHHHHHHHHHc--CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHH---------------HHH
Confidence 3444555555544 6666554422 222 1123455555566 99999976432222211 234
Q ss_pred HHhCCCeEEEEeCCCC
Q 037436 202 IQNSSRMTIAVRRKSS 217 (236)
Q Consensus 202 l~~s~~PVlvV~~~~~ 217 (236)
+....+|++++-....
T Consensus 80 ~~~~~ipvV~~~~~~~ 95 (276)
T 3ksm_A 80 YRARNIPVLVVDSDLA 95 (276)
T ss_dssp HHHTTCCEEEESSCCS
T ss_pred HHHCCCcEEEEecCCC
Confidence 5677999999966543
No 208
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=21.01 E-value=2e+02 Score=19.46 Aligned_cols=49 Identities=6% Similarity=-0.003 Sum_probs=30.1
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh-CCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN-SSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~-s~~PVlvV~~~~ 216 (236)
+...++.++...+|+|++...-... .++ .+.+.+-.. ..+|++++....
T Consensus 36 ~~~al~~~~~~~~dlvl~D~~l~~~-~g~------------~~~~~l~~~~~~~~ii~~s~~~ 85 (132)
T 3crn_A 36 AGEGLAKIENEFFNLALFXIKLPDM-EGT------------ELLEKAHKLRPGMKKIMVTGYA 85 (132)
T ss_dssp HHHHHHHHHHSCCSEEEECSBCSSS-BHH------------HHHHHHHHHCTTSEEEEEESCC
T ss_pred HHHHHHHHhcCCCCEEEEecCCCCC-chH------------HHHHHHHhhCCCCcEEEEeccc
Confidence 4566777788899999998753321 111 133444433 358999886543
No 209
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=20.77 E-value=1.4e+02 Score=20.43 Aligned_cols=50 Identities=8% Similarity=0.025 Sum_probs=31.5
Q ss_pred HHHHHHHHHH-CCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHH---hCCCeEEEEeCCC
Q 037436 155 GPIIVEEAKR-QNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQ---NSSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~-~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~---~s~~PVlvV~~~~ 216 (236)
+...++.+++ ..+|+||+...-.+...++ .+.+.+-+ ...+|++++-...
T Consensus 38 ~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~------------~~~~~l~~~~~~~~~~ii~ls~~~ 91 (140)
T 3lua_A 38 LKKFYSIFKDLDSITLIIMDIAFPVEKEGL------------EVLSAIRNNSRTANTPVIIATKSD 91 (140)
T ss_dssp HHHHHTTTTTCCCCSEEEECSCSSSHHHHH------------HHHHHHHHSGGGTTCCEEEEESCC
T ss_pred HHHHHHHHhcCCCCcEEEEeCCCCCCCcHH------------HHHHHHHhCcccCCCCEEEEeCCC
Confidence 4667777888 8999999987643122222 13344444 3468999887543
No 210
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=20.72 E-value=1.1e+02 Score=23.05 Aligned_cols=41 Identities=12% Similarity=-0.159 Sum_probs=28.7
Q ss_pred CCCCEEEEEecC-CHhHHHHHHHHHHhhccCCCEEEEEEEEe
Q 037436 66 RYGNKVMVVADS-SLDAKGALEWALSHTVQCQDTIVLLYVIA 106 (236)
Q Consensus 66 ~~~~~ILV~vD~-s~~s~~al~~A~~la~~~~~~l~llhV~~ 106 (236)
|.+.+|+|.+.. +.+++.++++.++-+...+.++.++++.+
T Consensus 3 M~M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 3 MSSPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp --CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred CCcceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 456688887766 45567788888887777777888777654
No 211
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=20.70 E-value=3.2e+02 Score=21.61 Aligned_cols=75 Identities=11% Similarity=-0.003 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhhCCCceEEEEEEe-cCC-hHHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHH
Q 037436 126 EKLHSMKSTCQLKKPGVQVEIAITE-GKE-KGPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQ 203 (236)
Q Consensus 126 ~~l~~~~~~~~~~~~~v~v~~~v~~-G~~-~~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~ 203 (236)
..++.+++.++.. ++++.+.... ++. .....++.+...++|-||+........... -.-+.
T Consensus 21 ~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~---------------~~~~~ 83 (305)
T 3g1w_A 21 RCLKGFEDAAQAL--NVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDT---------------INKAV 83 (305)
T ss_dssp HHHHHHHHHHHHH--TCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHH---------------HHHHH
T ss_pred HHHHHHHHHHHHc--CCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHH---------------HHHHH
Confidence 3445555555544 6666653322 222 123556666678999999875433222111 22345
Q ss_pred hCCCeEEEEeCCCC
Q 037436 204 NSSRMTIAVRRKSS 217 (236)
Q Consensus 204 ~s~~PVlvV~~~~~ 217 (236)
...+||+++-....
T Consensus 84 ~~~iPvV~~~~~~~ 97 (305)
T 3g1w_A 84 DAGIPIVLFDSGAP 97 (305)
T ss_dssp HTTCCEEEESSCCT
T ss_pred HCCCcEEEECCCCC
Confidence 67899999976543
No 212
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=20.62 E-value=66 Score=25.08 Aligned_cols=41 Identities=12% Similarity=-0.061 Sum_probs=27.4
Q ss_pred CCCEEEEEecC---CHhHHHHHHHHHHhhccCCCEEEEEEEEecC
Q 037436 67 YGNKVMVVADS---SLDAKGALEWALSHTVQCQDTIVLLYVIAKS 108 (236)
Q Consensus 67 ~~~~ILV~vD~---s~~s~~al~~A~~la~~~~~~l~llhV~~~~ 108 (236)
|+++|+|-+.+ .+.+...++|+..++. .+.++.++.+.+.|
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~-~~~~~~~idl~dLP 44 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAE-GRLEFHLLHIGDLP 44 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHT-TTEEEEECCGGGSC
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhcc-CCCEEEEEecccCC
Confidence 57788887765 2445678888888875 36677777765533
No 213
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=20.61 E-value=3.6e+02 Score=22.29 Aligned_cols=96 Identities=11% Similarity=0.082 Sum_probs=55.8
Q ss_pred CCCEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEE
Q 037436 67 YGNKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEI 146 (236)
Q Consensus 67 ~~~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~ 146 (236)
...+|.|-+.++...-.+|-++..- .....+|.+|-... + . + ...++.. ++.+..
T Consensus 89 ~~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~Visn~-~-~-------------~-------~~~A~~~--gIp~~~ 143 (286)
T 3n0v_A 89 HRPKVVIMVSKADHCLNDLLYRQRI-GQLGMDVVAVVSNH-P-D-------------L-------EPLAHWH--KIPYYH 143 (286)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHHT-TSSCCEEEEEEESS-S-T-------------T-------HHHHHHT--TCCEEE
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHC-CCCCcEEEEEEeCc-H-H-------------H-------HHHHHHc--CCCEEE
Confidence 4568999998887777777666543 23456666655443 1 1 0 1112322 565543
Q ss_pred EEEecCCh---HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhc
Q 037436 147 AITEGKEK---GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRW 187 (236)
Q Consensus 147 ~v~~G~~~---~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~ 187 (236)
.-.....+ ...+++..++.++|++|+....+=....+|..|
T Consensus 144 ~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~ 187 (286)
T 3n0v_A 144 FALDPKDKPGQERKVLQVIEETGAELVILARYMQVLSPELCRRL 187 (286)
T ss_dssp CCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHT
T ss_pred eCCCcCCHHHHHHHHHHHHHhcCCCEEEecccccccCHHHHhhh
Confidence 21111111 247899999999999999987654444455555
No 214
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=20.43 E-value=1.4e+02 Score=26.10 Aligned_cols=79 Identities=6% Similarity=0.043 Sum_probs=43.7
Q ss_pred CHhHHHHHHHHHHhhccC-------------CCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHh--hhhCCCc
Q 037436 78 SLDAKGALEWALSHTVQC-------------QDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTC--QLKKPGV 142 (236)
Q Consensus 78 s~~s~~al~~A~~la~~~-------------~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~v 142 (236)
...+++.+++|.++|.+. ..+|+++|=.- .. ......+ .+. +.+.. ...+|+|
T Consensus 161 r~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaN---Vl--~~s~glf----~~~---~~ev~~~a~eypdV 228 (366)
T 3ty4_A 161 EEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSN---VM--SVTDGLF----RES---CRHAQSLDPSYASI 228 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTT---TC--TTHHHHH----HHH---HHHHGGGCGGGTTS
T ss_pred HHHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCc---ch--HhHHHHH----HHH---HHHHHHhHhhCCCc
Confidence 457778888888888775 56888887422 22 0011111 111 22221 2347888
Q ss_pred eEEEEEEecCChHHHHHHHHH-HCCCCEEEEc
Q 037436 143 QVEIAITEGKEKGPIIVEEAK-RQNVSLLVLG 173 (236)
Q Consensus 143 ~v~~~v~~G~~~~~~I~~~a~-~~~~DLLVmG 173 (236)
.++..++.. ...+.++ -.+.|+||+.
T Consensus 229 ~~~~~~VD~-----~am~lv~~P~~FDViVt~ 255 (366)
T 3ty4_A 229 NVDEQIVDS-----MVYRLFREPECFDVVVAP 255 (366)
T ss_dssp EEEEEEHHH-----HHHHHHHCGGGCSEEEEC
T ss_pred eEEeeeHHH-----HHHHHHhCcccCcEEEEC
Confidence 888776652 2223332 3678888775
No 215
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=20.28 E-value=2.2e+02 Score=19.54 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=29.7
Q ss_pred HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHh-CCCeEEEEeCCC
Q 037436 155 GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQN-SSRMTIAVRRKS 216 (236)
Q Consensus 155 ~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~-s~~PVlvV~~~~ 216 (236)
+...++.+++..+|+|++...-... .++ .+.+.+-.. ..+|++++....
T Consensus 37 ~~~a~~~l~~~~~dlvllD~~l~~~-~g~------------~l~~~l~~~~~~~~ii~ls~~~ 86 (137)
T 3cfy_A 37 GRDAIQFIERSKPQLIILDLKLPDM-SGE------------DVLDWINQNDIPTSVIIATAHG 86 (137)
T ss_dssp HHHHHHHHHHHCCSEEEECSBCSSS-BHH------------HHHHHHHHTTCCCEEEEEESSC
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCC-CHH------------HHHHHHHhcCCCCCEEEEEecC
Confidence 4566777777889999998753221 111 133444333 358888886543
No 216
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=20.25 E-value=1.9e+02 Score=26.27 Aligned_cols=78 Identities=6% Similarity=0.033 Sum_probs=45.5
Q ss_pred CHhHHHHHHHHHHhhccC-CCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEEEecCChHH
Q 037436 78 SLDAKGALEWALSHTVQC-QDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAITEGKEKGP 156 (236)
Q Consensus 78 s~~s~~al~~A~~la~~~-~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v~~G~~~~~ 156 (236)
....++.+++|.++|.+. ...|+++|=.- .. ..... -..+..+++ ...+|+|.++..++..
T Consensus 164 r~~ieRIar~AFe~A~~r~rkkVT~V~KaN---Vl--k~sdG----lfr~v~~eV----a~eYPdI~~e~~~VD~----- 225 (496)
T 2d1c_A 164 WKGSEKIVRFAFELARAEGRKKVHCATKSN---IM--KLAEG----TLKRAFEQV----AQEYPDIEAVHIIVDN----- 225 (496)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECTT---TC--TTHHH----HHHHHHHHH----HTTCTTSEEEEEEHHH-----
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCC---ch--hhHHH----HHHHHHHHH----HHHCCCceEEEEeHHH-----
Confidence 467788999999999987 56788887533 21 00111 112222222 2247888888876652
Q ss_pred HHHHHHH-HCCCCEEEEc
Q 037436 157 IIVEEAK-RQNVSLLVLG 173 (236)
Q Consensus 157 ~I~~~a~-~~~~DLLVmG 173 (236)
...+.++ -.+.|+||+.
T Consensus 226 ~amqLV~~P~~FDVIVt~ 243 (496)
T 2d1c_A 226 AAHQLVKRPEQFEVIVTT 243 (496)
T ss_dssp HHHHHHHCGGGCSEEEEC
T ss_pred HHHHHhhCcCcceEEEEC
Confidence 2233332 3678888876
No 217
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=20.15 E-value=3.7e+02 Score=22.87 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=26.7
Q ss_pred CCEEEEEecCCHhHHHHHHHHHHh---hccCCCEEEEE
Q 037436 68 GNKVMVVADSSLDAKGALEWALSH---TVQCQDTIVLL 102 (236)
Q Consensus 68 ~~~ILV~vD~s~~s~~al~~A~~l---a~~~~~~l~ll 102 (236)
.++|+++.|+......|...++.. ....+-.+.++
T Consensus 206 ~~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~ 243 (338)
T 1dd9_A 206 TNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFM 243 (338)
T ss_dssp CSEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 478999999999999999888887 33445555544
No 218
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=20.13 E-value=3e+02 Score=21.15 Aligned_cols=59 Identities=12% Similarity=0.100 Sum_probs=36.1
Q ss_pred ceEEEEEEecCChHHHHHHHHHH---CCCCEEEEccCCCCchhhhhhhccCCCcccCcHHHHHHHhCCCeEEEEeCC
Q 037436 142 VQVEIAITEGKEKGPIIVEEAKR---QNVSLLVLGQRRKSIVWTLMNRWSSKKKAVGDIADYCIQNSSRMTIAVRRK 215 (236)
Q Consensus 142 v~v~~~v~~G~~~~~~I~~~a~~---~~~DLLVmG~~~~s~~~~l~~~~~~~~~~~gs~~~~ll~~s~~PVlvV~~~ 215 (236)
..+++.+.+... ..+|++.+.+ .++|-||+..-..+... =...+.+...++|++=|.-.
T Consensus 57 ~g~~v~~~QSN~-EGeLId~Ih~A~~~~~dgIIINpgAyTHtS--------------vAlrDAL~~v~~P~VEVHiS 118 (167)
T 3kip_A 57 NDSEVLVFQSNT-EGFIIDRIHEAKRQGVGFVVINAGAYTHTS--------------VGIRDALLGTAIPFIEVHIT 118 (167)
T ss_dssp SSCEEEEEECSC-HHHHHHHHHHHHHTTCCEEEEECGGGGGTC--------------HHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEEecCC-HHHHHHHHHHhhhcCccEEEEccccceecc--------------HHHHHHHHhcCCCEEEEEcC
Confidence 344555555554 4566666543 56999999865432211 12346677789999999643
No 219
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=20.02 E-value=2.6e+02 Score=20.28 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=28.3
Q ss_pred HHHHhhhhCCCceEEEEEEecCChHHHHHHHHHHCCCCEEEEccCC
Q 037436 131 MKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQRR 176 (236)
Q Consensus 131 ~~~~~~~~~~~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~~ 176 (236)
+...+...+|++++++.. +. ...+.+...+.++|+.|.....
T Consensus 22 ~l~~~~~~~P~i~i~i~~--~~--~~~~~~~l~~g~~Dl~i~~~~~ 63 (219)
T 3jv9_A 22 LIVSLRRTAPKMPLMLEE--NY--THTLTESLKRGDVDAIIVAEPF 63 (219)
T ss_dssp HHHHHHHHSTTCCEEEEE--EC--HHHHHHHHHHTSSSEEEEESSC
T ss_pred HHHHHHHHCCCcEEEEEe--CC--cHHHHHHHHcCCCCEEEEcCCC
Confidence 333334446777777653 33 3678888889999999887643
No 220
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=20.02 E-value=3.2e+02 Score=21.42 Aligned_cols=96 Identities=11% Similarity=0.143 Sum_probs=50.8
Q ss_pred CEEEEEecCCHhHHHHHHHHHHhhccCCCEEEEEEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCceEEEEE
Q 037436 69 NKVMVVADSSLDAKGALEWALSHTVQCQDTIVLLYVIAKSSKQVKETKGKKLYLRAYEKLHSMKSTCQLKKPGVQVEIAI 148 (236)
Q Consensus 69 ~~ILV~vD~s~~s~~al~~A~~la~~~~~~l~llhV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~~~v 148 (236)
+||.|-+.++-..-.+|-.+..- ...+.+|.+|-..+ ... .. .+.++.. ++.+...-
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~-~~~~~~I~~Vvs~~--~~~----~~--------------~~~A~~~--gIp~~~~~ 57 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTRE-PNSSAQIDIVISNK--AAV----AG--------------LDKAERA--GIPTRVIN 57 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHS-TTCSCEEEEEEESS--TTC----HH--------------HHHHHHT--TCCEEECC
T ss_pred CeEEEEEECCchHHHHHHHHHhc-CCCCcEEEEEEeCC--CCh----HH--------------HHHHHHc--CCCEEEEC
Confidence 36888888877666666554332 12245665554433 211 00 1223322 56553321
Q ss_pred Eec-CCh---HHHHHHHHHHCCCCEEEEccCCCCchhhhhhhc
Q 037436 149 TEG-KEK---GPIIVEEAKRQNVSLLVLGQRRKSIVWTLMNRW 187 (236)
Q Consensus 149 ~~G-~~~---~~~I~~~a~~~~~DLLVmG~~~~s~~~~l~~~~ 187 (236)
... ..+ .+.+++..++.++|++|+....+-....+|..|
T Consensus 58 ~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~~ 100 (209)
T 1meo_A 58 HKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKW 100 (209)
T ss_dssp GGGSSSHHHHHHHHHHHHHHTTCCEEEEESCCSCCCHHHHHHT
T ss_pred ccccCchhhhhHHHHHHHHhcCCCEEEEcchhhhCCHHHHhhh
Confidence 111 110 257889999999999999876543333444444
No 221
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.01 E-value=79 Score=22.16 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=21.3
Q ss_pred HHHHHhhhhCCCceEEEEEEecCChHHHHHHHHHHCCCCEEEEccC
Q 037436 130 SMKSTCQLKKPGVQVEIAITEGKEKGPIIVEEAKRQNVSLLVLGQR 175 (236)
Q Consensus 130 ~~~~~~~~~~~~v~v~~~v~~G~~~~~~I~~~a~~~~~DLLVmG~~ 175 (236)
.++.++... ++++.+.--.... -+.|-+..+++++.++|+--.
T Consensus 17 kfkdiikkn--gfkvrtvrspqel-kdsieelvkkynativvvvvd 59 (134)
T 2l69_A 17 KFKDIIKKN--GFKVRTVRSPQEL-KDSIEELVKKYNATIVVVVVD 59 (134)
T ss_dssp HHHHHHHHT--TCEEEEECSHHHH-HHHHHHHTTCCCCEEEEEECS
T ss_pred HHHHHHHhc--CceEEEecCHHHH-HHHHHHHHHHhCCeEEEEEEc
Confidence 344444433 5555444222222 355666666666666666544
Done!