Query 037438
Match_columns 118
No_of_seqs 140 out of 1071
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 12:14:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037438.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037438hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 99.7 3E-17 6.5E-22 135.5 7.2 73 4-76 265-337 (358)
2 PRK10532 threonine and homoser 99.5 4.6E-14 9.9E-19 111.8 6.5 74 1-74 215-288 (293)
3 PRK11453 O-acetylserine/cystei 99.4 2E-13 4.2E-18 108.3 6.0 70 1-70 221-290 (299)
4 PRK11689 aromatic amino acid e 99.4 3.3E-13 7.1E-18 107.0 6.1 68 3-70 223-290 (295)
5 PRK11272 putative DMT superfam 99.3 1.4E-12 3E-17 103.1 5.7 71 1-71 219-289 (292)
6 PF00892 EamA: EamA-like trans 99.2 6.7E-11 1.5E-15 79.7 6.6 66 1-66 60-125 (126)
7 TIGR03340 phn_DUF6 phosphonate 99.2 3.6E-11 7.7E-16 94.5 5.1 63 2-64 218-280 (281)
8 PRK15430 putative chlorampheni 99.2 6.2E-11 1.3E-15 94.0 6.3 64 4-67 222-285 (296)
9 PRK02971 4-amino-4-deoxy-L-ara 99.1 1.5E-10 3.3E-15 84.0 6.2 71 1-71 54-126 (129)
10 TIGR00817 tpt Tpt phosphate/ph 99.1 3.9E-11 8.5E-16 94.8 3.0 69 5-73 227-299 (302)
11 TIGR00950 2A78 Carboxylate/Ami 99.1 1.5E-10 3.2E-15 88.4 4.8 62 1-62 198-259 (260)
12 COG0697 RhaT Permeases of the 98.9 2.7E-09 5.8E-14 80.8 6.5 68 1-68 221-288 (292)
13 PTZ00343 triose or hexose phos 98.9 3.8E-09 8.3E-14 86.4 5.9 67 2-68 279-349 (350)
14 PF13536 EmrE: Multidrug resis 98.8 1.4E-08 3E-13 70.6 6.2 67 4-71 44-110 (113)
15 PRK15051 4-amino-4-deoxy-L-ara 98.7 5E-08 1.1E-12 68.8 6.0 64 3-66 45-108 (111)
16 COG2510 Predicted membrane pro 98.6 2.7E-08 5.9E-13 73.5 3.4 64 3-66 75-138 (140)
17 PRK15430 putative chlorampheni 98.5 2.7E-07 5.9E-12 73.2 6.0 65 3-67 81-145 (296)
18 COG5006 rhtA Threonine/homoser 98.5 1.6E-07 3.5E-12 76.2 4.5 73 1-73 216-288 (292)
19 TIGR00776 RhaT RhaT L-rhamnose 98.5 2.1E-07 4.7E-12 74.3 4.9 66 2-68 219-289 (290)
20 TIGR00950 2A78 Carboxylate/Ami 98.4 3.7E-07 8E-12 69.6 5.7 65 3-67 55-119 (260)
21 TIGR03340 phn_DUF6 phosphonate 98.4 6.1E-07 1.3E-11 70.5 6.2 65 4-68 72-136 (281)
22 TIGR00688 rarD rarD protein. T 98.4 1.2E-06 2.6E-11 67.6 6.6 63 5-67 80-142 (256)
23 PRK10452 multidrug efflux syst 98.2 6.9E-06 1.5E-10 59.3 6.9 68 3-70 38-106 (120)
24 TIGR00817 tpt Tpt phosphate/ph 98.1 4.8E-06 1E-10 65.8 5.0 61 6-66 76-136 (302)
25 COG0697 RhaT Permeases of the 98.0 8.9E-06 1.9E-10 61.5 5.4 70 3-72 78-148 (292)
26 PRK09541 emrE multidrug efflux 98.0 2.4E-05 5.2E-10 55.5 6.9 67 3-69 38-105 (110)
27 PLN00411 nodulin MtN21 family 98.0 1.1E-05 2.3E-10 67.0 5.8 62 7-68 90-157 (358)
28 PRK11453 O-acetylserine/cystei 98.0 1.3E-05 2.8E-10 63.6 5.6 61 8-68 72-133 (299)
29 PRK11272 putative DMT superfam 97.9 2.2E-05 4.8E-10 62.1 5.5 62 6-68 80-142 (292)
30 PTZ00343 triose or hexose phos 97.9 2.4E-05 5.2E-10 64.1 5.7 60 8-67 127-186 (350)
31 COG2076 EmrE Membrane transpor 97.8 9E-05 2E-09 52.8 6.5 67 3-69 38-105 (106)
32 PRK10650 multidrug efflux syst 97.7 0.00011 2.5E-09 52.2 6.3 63 4-66 44-107 (109)
33 PRK11431 multidrug efflux syst 97.7 0.00016 3.4E-09 51.1 6.6 65 4-68 38-103 (105)
34 PF06027 DUF914: Eukaryotic pr 97.7 7.1E-05 1.5E-09 62.1 5.4 70 4-73 242-311 (334)
35 TIGR00688 rarD rarD protein. T 97.7 3.9E-05 8.4E-10 59.2 3.5 39 4-42 217-255 (256)
36 PRK11689 aromatic amino acid e 97.7 9.5E-05 2.1E-09 58.7 5.8 59 10-68 76-138 (295)
37 PF03151 TPT: Triose-phosphate 97.7 9.1E-05 2E-09 52.4 5.1 58 9-66 95-152 (153)
38 PF08449 UAA: UAA transporter 97.6 0.00015 3.3E-09 57.8 6.6 69 4-72 234-302 (303)
39 PF00893 Multi_Drug_Res: Small 97.5 0.00027 5.9E-09 48.2 5.4 55 4-58 38-93 (93)
40 KOG4510 Permease of the drug/m 97.5 6.6E-05 1.4E-09 62.0 2.5 63 7-69 109-171 (346)
41 TIGR00803 nst UDP-galactose tr 97.5 2.7E-05 5.9E-10 59.2 0.1 60 5-64 162-221 (222)
42 COG2962 RarD Predicted permeas 97.3 0.00048 1E-08 56.6 5.1 64 7-70 84-147 (293)
43 PF04142 Nuc_sug_transp: Nucle 97.2 0.0012 2.6E-08 52.2 6.3 63 10-72 32-94 (244)
44 COG2962 RarD Predicted permeas 97.1 0.0012 2.7E-08 54.2 6.4 67 4-70 220-286 (293)
45 TIGR00776 RhaT RhaT L-rhamnose 97.1 0.00069 1.5E-08 54.2 4.8 62 7-68 71-137 (290)
46 PF08449 UAA: UAA transporter 97.0 0.0017 3.8E-08 51.7 5.6 71 4-74 73-143 (303)
47 PF06027 DUF914: Eukaryotic pr 96.6 0.0039 8.5E-08 51.8 5.5 65 6-70 90-154 (334)
48 KOG1580 UDP-galactose transpor 96.5 0.0095 2.1E-07 48.9 6.7 64 3-66 249-312 (337)
49 PF10639 UPF0546: Uncharacteri 96.1 0.0085 1.8E-07 43.0 3.9 59 7-65 53-112 (113)
50 PF05653 Mg_trans_NIPA: Magnes 95.7 0.0079 1.7E-07 49.0 2.6 63 5-67 60-122 (300)
51 KOG2234 Predicted UDP-galactos 95.3 0.064 1.4E-06 45.2 6.6 60 11-70 108-167 (345)
52 KOG1441 Glucose-6-phosphate/ph 95.1 0.0031 6.6E-08 52.2 -1.6 64 11-74 251-314 (316)
53 PF06800 Sugar_transport: Suga 95.0 0.084 1.8E-06 43.0 6.4 68 7-74 57-129 (269)
54 KOG4510 Permease of the drug/m 94.9 0.025 5.4E-07 47.0 3.0 63 5-67 263-325 (346)
55 KOG2765 Predicted membrane pro 94.4 0.056 1.2E-06 46.4 4.1 73 1-73 324-396 (416)
56 PF04342 DUF486: Protein of un 93.9 0.053 1.1E-06 38.9 2.6 30 36-65 77-106 (108)
57 COG3169 Uncharacterized protei 93.7 0.14 3E-06 36.7 4.4 32 36-67 84-115 (116)
58 KOG4314 Predicted carbohydrate 93.3 0.051 1.1E-06 43.7 1.9 63 8-70 66-128 (290)
59 KOG1582 UDP-galactose transpor 92.9 0.35 7.6E-06 40.5 6.3 57 14-70 279-335 (367)
60 PRK10532 threonine and homoser 92.8 0.22 4.8E-06 39.4 4.8 57 5-67 81-137 (293)
61 PF06800 Sugar_transport: Suga 92.0 0.29 6.2E-06 39.9 4.7 57 7-63 207-267 (269)
62 KOG2234 Predicted UDP-galactos 91.8 0.44 9.5E-06 40.2 5.6 63 10-72 265-327 (345)
63 KOG1581 UDP-galactose transpor 91.7 0.13 2.8E-06 43.0 2.4 66 4-69 250-315 (327)
64 PRK13499 rhamnose-proton sympo 91.3 0.65 1.4E-05 39.0 6.2 68 7-74 85-160 (345)
65 KOG1583 UDP-N-acetylglucosamin 90.4 0.22 4.7E-06 41.5 2.5 53 19-71 266-320 (330)
66 KOG3912 Predicted integral mem 90.4 0.36 7.9E-06 40.5 3.8 64 5-68 96-159 (372)
67 KOG2765 Predicted membrane pro 88.7 0.27 5.9E-06 42.3 1.9 66 7-72 171-236 (416)
68 COG3086 RseC Positive regulato 87.8 0.91 2E-05 34.3 4.1 27 16-42 69-95 (150)
69 PF04246 RseC_MucC: Positive r 87.4 0.95 2E-05 32.3 3.8 28 20-48 66-93 (135)
70 COG5070 VRG4 Nucleotide-sugar 86.7 0.4 8.7E-06 39.2 1.7 54 4-57 233-286 (309)
71 PF11118 DUF2627: Protein of u 85.0 2.1 4.5E-05 29.1 4.2 57 23-79 4-72 (77)
72 COG4975 GlcU Putative glucose 84.6 0.14 3.1E-06 41.9 -1.8 64 7-70 71-139 (288)
73 KOG2922 Uncharacterized conser 84.5 0.13 2.9E-06 43.1 -2.1 55 19-73 88-142 (335)
74 PRK10862 SoxR reducing system 84.5 1.6 3.5E-05 32.4 3.9 23 20-42 73-95 (154)
75 TIGR02840 spore_YtaF putative 83.2 0.81 1.8E-05 35.4 1.9 62 5-66 17-80 (206)
76 PF04657 DUF606: Protein of un 83.1 4.1 9E-05 29.5 5.6 59 6-64 75-138 (138)
77 PRK13499 rhamnose-proton sympo 82.0 5.6 0.00012 33.4 6.6 61 7-68 272-342 (345)
78 KOG4831 Unnamed protein [Funct 81.7 2.4 5.2E-05 30.9 3.7 58 8-65 65-123 (125)
79 PF04156 IncA: IncA protein; 81.6 6.9 0.00015 29.0 6.4 22 52-73 47-68 (191)
80 PRK02237 hypothetical protein; 81.2 8.8 0.00019 27.6 6.5 39 32-70 70-108 (109)
81 KOG1443 Predicted integral mem 80.5 2.8 6E-05 35.4 4.3 51 15-65 263-313 (349)
82 PF13994 PgaD: PgaD-like prote 80.0 2.8 6.1E-05 30.4 3.7 53 54-110 68-124 (138)
83 COG3238 Uncharacterized protei 78.3 5.6 0.00012 29.9 4.9 56 14-69 88-148 (150)
84 KOG1442 GDP-fucose transporter 78.0 0.56 1.2E-05 39.2 -0.5 55 10-64 117-171 (347)
85 PF04142 Nuc_sug_transp: Nucle 77.7 2.4 5.1E-05 33.5 2.9 54 5-58 191-244 (244)
86 PRK13108 prolipoprotein diacyl 76.9 13 0.00028 32.5 7.4 46 24-69 226-276 (460)
87 PF05653 Mg_trans_NIPA: Magnes 76.5 5.2 0.00011 32.6 4.7 66 4-69 222-294 (300)
88 KOG1443 Predicted integral mem 75.2 0.61 1.3E-05 39.3 -1.1 68 3-70 92-159 (349)
89 PRK11469 hypothetical protein; 73.5 2.4 5.2E-05 32.5 1.9 46 21-66 40-86 (188)
90 PF04306 DUF456: Protein of un 72.7 14 0.00031 27.0 5.8 63 3-74 42-104 (140)
91 PF02694 UPF0060: Uncharacteri 72.4 5.3 0.00011 28.6 3.3 41 30-70 66-106 (107)
92 KOG1441 Glucose-6-phosphate/ph 71.6 0.4 8.6E-06 39.8 -3.0 60 7-66 95-154 (316)
93 PF11295 DUF3096: Protein of u 70.1 6.1 0.00013 23.5 2.7 33 32-64 1-33 (39)
94 KOG1444 Nucleotide-sugar trans 68.2 10 0.00022 31.8 4.6 63 12-74 245-307 (314)
95 KOG1442 GDP-fucose transporter 61.2 1.8 3.9E-05 36.3 -1.0 52 33-84 293-344 (347)
96 PF02659 DUF204: Domain of unk 60.7 11 0.00023 23.7 2.7 54 5-58 8-63 (67)
97 KOG3912 Predicted integral mem 60.4 9.5 0.00021 32.3 3.0 50 17-66 284-333 (372)
98 KOG1583 UDP-N-acetylglucosamin 58.0 10 0.00022 31.9 2.8 47 29-75 99-145 (330)
99 KOG2766 Predicted membrane pro 56.8 11 0.00023 31.6 2.7 55 9-65 243-297 (336)
100 KOG1580 UDP-galactose transpor 56.8 6.6 0.00014 32.5 1.5 43 29-71 119-161 (337)
101 PLN02822 serine palmitoyltrans 55.3 2.8 6.1E-05 35.9 -0.9 59 41-99 28-88 (481)
102 PF07857 DUF1632: CEO family ( 53.0 12 0.00026 30.2 2.4 25 48-72 115-139 (254)
103 PF01102 Glycophorin_A: Glycop 52.3 13 0.00029 26.9 2.4 21 53-73 75-95 (122)
104 PF14963 CAML: Calcium signal- 52.0 16 0.00035 29.9 3.0 56 3-63 166-224 (263)
105 KOG0913 Thiol-disulfide isomer 51.6 6.6 0.00014 31.9 0.8 39 75-113 210-248 (248)
106 PF12273 RCR: Chitin synthesis 49.9 12 0.00026 26.6 1.8 12 78-89 30-41 (130)
107 PRK10489 enterobactin exporter 49.5 49 0.0011 26.5 5.5 54 31-84 361-415 (417)
108 COG2149 Predicted membrane pro 49.0 25 0.00053 25.7 3.3 23 46-68 52-74 (120)
109 TIGR00803 nst UDP-galactose tr 47.9 17 0.00036 27.4 2.4 45 26-70 9-53 (222)
110 PF06963 FPN1: Ferroportin1 (F 47.7 50 0.0011 28.4 5.5 59 5-66 306-367 (432)
111 PRK15049 L-asparagine permease 47.4 1.5E+02 0.0032 25.4 8.4 12 28-39 422-433 (499)
112 PF06379 RhaT: L-rhamnose-prot 47.2 29 0.00063 29.4 3.9 65 10-74 88-160 (344)
113 PF15345 TMEM51: Transmembrane 47.0 16 0.00034 29.5 2.2 22 53-74 67-88 (233)
114 PF15471 TMEM171: Transmembran 46.8 29 0.00063 29.0 3.8 23 49-71 161-183 (319)
115 COG1862 YajC Preprotein transl 45.3 35 0.00075 23.9 3.5 22 57-78 17-39 (97)
116 COG1971 Predicted membrane pro 42.5 53 0.0012 25.7 4.5 47 22-68 41-88 (190)
117 COG4975 GlcU Putative glucose 42.5 7.9 0.00017 32.0 -0.1 59 7-65 221-283 (288)
118 TIGR00544 lgt prolipoprotein d 42.2 1.1E+02 0.0023 24.7 6.4 47 23-69 213-268 (278)
119 TIGR01167 LPXTG_anchor LPXTG-m 41.9 42 0.00092 18.0 2.9 14 48-61 11-24 (34)
120 PRK09577 multidrug efflux prot 40.3 68 0.0015 30.4 5.6 34 32-66 902-935 (1032)
121 PRK12437 prolipoprotein diacyl 40.1 27 0.00058 28.0 2.6 47 23-69 206-257 (269)
122 PRK00281 undecaprenyl pyrophos 39.0 82 0.0018 25.5 5.2 44 23-66 85-131 (268)
123 PRK09579 multidrug efflux prot 38.8 75 0.0016 30.1 5.6 33 33-66 882-914 (1017)
124 PF05393 Hum_adeno_E3A: Human 38.5 70 0.0015 22.4 4.1 30 47-76 35-64 (94)
125 PRK00052 prolipoprotein diacyl 38.2 28 0.0006 27.8 2.4 49 23-71 208-261 (269)
126 TIGR00966 3a0501s07 protein-ex 37.8 70 0.0015 25.1 4.6 43 21-64 123-165 (246)
127 PF02038 ATP1G1_PLM_MAT8: ATP1 37.3 34 0.00074 21.4 2.2 23 50-72 18-40 (50)
128 PRK10655 potE putrescine trans 36.4 55 0.0012 27.0 4.0 45 30-74 389-433 (438)
129 PF08693 SKG6: Transmembrane a 36.4 26 0.00055 20.9 1.5 17 54-70 22-38 (40)
130 PF12606 RELT: Tumour necrosis 36.0 75 0.0016 19.7 3.6 19 56-74 12-30 (50)
131 PRK13022 secF preprotein trans 34.2 83 0.0018 25.4 4.6 45 19-64 150-194 (289)
132 PRK10720 uracil transporter; P 33.6 79 0.0017 26.9 4.6 34 2-35 46-80 (428)
133 PF01618 MotA_ExbB: MotA/TolQ/ 33.6 75 0.0016 22.5 3.8 21 1-21 69-89 (139)
134 PF05977 MFS_3: Transmembrane 33.4 1.8E+02 0.0038 25.5 6.8 53 14-66 339-391 (524)
135 PRK10755 sensor protein BasS/P 33.3 64 0.0014 25.3 3.8 11 36-46 21-31 (356)
136 PF15102 TMEM154: TMEM154 prot 31.4 37 0.00079 25.6 1.9 21 54-74 68-88 (146)
137 COG1742 Uncharacterized conser 31.3 1.1E+02 0.0025 21.9 4.3 37 33-69 70-106 (109)
138 PF08507 COPI_assoc: COPI asso 31.3 1.6E+02 0.0035 20.9 5.3 30 36-66 75-104 (136)
139 PF11755 DUF3311: Protein of u 30.4 1.5E+02 0.0032 18.9 5.1 41 28-68 3-52 (66)
140 PF02673 BacA: Bacitracin resi 30.2 1.4E+02 0.0029 24.0 5.2 47 21-67 78-128 (259)
141 PF15099 PIRT: Phosphoinositid 30.2 19 0.00042 26.6 0.3 21 44-64 74-94 (129)
142 TIGR03810 arg_ornith_anti argi 30.1 1.8E+02 0.004 24.4 6.2 42 29-70 391-432 (468)
143 PF01988 VIT1: VIT family; In 29.7 53 0.0012 25.1 2.7 32 30-61 13-44 (213)
144 PRK13021 secF preprotein trans 29.3 1.1E+02 0.0024 25.1 4.6 40 24-64 154-193 (297)
145 COG0475 KefB Kef-type K+ trans 28.7 1.3E+02 0.0027 25.4 4.9 60 9-71 204-263 (397)
146 COG1380 Putative effector of m 28.3 72 0.0016 23.3 3.0 31 34-64 11-48 (128)
147 KOG1358 Serine palmitoyltransf 27.9 28 0.0006 30.6 0.9 53 45-97 16-70 (467)
148 PF15065 NCU-G1: Lysosomal tra 27.8 11 0.00025 31.8 -1.5 49 12-72 301-349 (350)
149 PF00873 ACR_tran: AcrB/AcrD/A 26.2 1.4E+02 0.003 28.0 5.2 54 8-64 875-930 (1021)
150 TIGR00739 yajC preprotein tran 25.7 45 0.00097 22.4 1.4 27 59-85 13-40 (84)
151 PRK02935 hypothetical protein; 25.7 1.6E+02 0.0034 21.3 4.2 43 28-71 19-64 (110)
152 PF07444 Ycf66_N: Ycf66 protei 24.8 74 0.0016 21.7 2.4 23 46-68 4-26 (84)
153 PF01350 Flavi_NS4A: Flaviviru 24.6 3.1E+02 0.0066 20.6 6.7 63 8-74 61-123 (144)
154 PF14897 EpsG: EpsG family 24.3 2.4E+02 0.0053 21.6 5.5 59 4-66 72-130 (330)
155 PF02009 Rifin_STEVOR: Rifin/s 23.3 1.1E+02 0.0023 25.4 3.5 37 26-74 251-287 (299)
156 TIGR01129 secD protein-export 23.0 1.6E+02 0.0035 25.0 4.6 42 21-63 272-313 (397)
157 COG1968 BacA Undecaprenyl pyro 22.9 2.4E+02 0.0053 23.1 5.4 45 24-68 86-133 (270)
158 TIGR00905 2A0302 transporter, 22.9 2.4E+02 0.0053 23.7 5.6 43 27-69 394-436 (473)
159 cd08764 Cyt_b561_CG1275_like N 22.8 2.2E+02 0.0047 22.4 5.0 47 23-70 138-196 (214)
160 PF13567 DUF4131: Domain of un 22.8 2.5E+02 0.0054 18.9 5.9 23 44-66 36-58 (176)
161 PRK00269 zipA cell division pr 22.7 66 0.0014 26.8 2.1 26 47-72 5-30 (293)
162 COG1296 AzlC Predicted branche 22.7 2E+02 0.0044 23.0 4.8 48 24-72 139-190 (238)
163 PLN02351 cytochromes b561 fami 22.5 2.4E+02 0.0053 22.8 5.3 43 23-68 161-219 (242)
164 PF08006 DUF1700: Protein of u 22.4 2.4E+02 0.0051 20.7 5.0 10 54-63 143-152 (181)
165 PRK11562 nitrite transporter N 22.4 86 0.0019 25.4 2.7 26 47-72 229-254 (268)
166 PF04191 PEMT: Phospholipid me 22.4 86 0.0019 20.5 2.4 22 49-70 1-22 (106)
167 PF04657 DUF606: Protein of un 22.3 3E+02 0.0065 19.7 6.1 57 11-67 19-83 (138)
168 PF05510 Sarcoglycan_2: Sarcog 22.2 1.5E+02 0.0032 25.6 4.2 18 95-112 331-348 (386)
169 cd02432 Nodulin-21_like_1 Nodu 22.1 75 0.0016 24.8 2.3 33 29-61 18-50 (218)
170 TIGR00908 2A0305 ethanolamine 22.0 2.9E+02 0.0063 22.8 5.9 43 28-70 386-432 (442)
171 PRK12933 secD preprotein trans 21.7 1.7E+02 0.0036 26.8 4.6 39 25-64 468-507 (604)
172 COG3366 Uncharacterized protei 21.6 1.7E+02 0.0036 24.6 4.3 45 20-64 98-142 (311)
173 COG2233 UraA Xanthine/uracil p 21.5 1.4E+02 0.0031 26.2 4.1 38 2-39 59-100 (451)
174 TIGR00892 2A0113 monocarboxyla 21.4 86 0.0019 26.0 2.6 6 69-74 428-433 (455)
175 PF03899 ATP_synt_I: ATP synth 21.3 2.1E+02 0.0046 18.2 4.0 39 31-69 9-47 (100)
176 TIGR02230 ATPase_gene1 F0F1-AT 21.1 2.2E+02 0.0047 20.0 4.2 38 30-67 53-90 (100)
177 PF12036 DUF3522: Protein of u 21.0 3.2E+02 0.0068 20.7 5.5 65 3-70 73-137 (186)
178 PF11449 DUF2899: Protein of u 20.9 2.1E+02 0.0045 23.9 4.7 61 6-66 193-268 (298)
179 PRK13955 mscL large-conductanc 20.9 1.3E+02 0.0029 22.0 3.2 17 98-114 113-129 (130)
180 COG0682 Lgt Prolipoprotein dia 20.8 88 0.0019 25.8 2.5 25 50-74 255-279 (287)
181 PRK10644 arginine:agmatin anti 20.8 3.2E+02 0.007 22.6 5.9 17 27-43 386-402 (445)
182 PRK13024 bifunctional preprote 20.6 2E+02 0.0043 26.6 4.9 43 21-64 290-332 (755)
183 TIGR01512 ATPase-IB2_Cd heavy 20.4 1.1E+02 0.0024 26.6 3.1 77 32-116 4-80 (536)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.70 E-value=3e-17 Score=135.46 Aligned_cols=73 Identities=40% Similarity=0.822 Sum_probs=67.6
Q ss_pred ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchhhhh
Q 037438 4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMKKQ 76 (118)
Q Consensus 4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~~~~ 76 (118)
++.++|.+|+|++++.||+++|+|.+++|++++++|+++|||++++.+++|+++|+.|++++.|+++|+.+.+
T Consensus 265 ~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~ 337 (358)
T PLN00411 265 ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQ 337 (358)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 3668999999999999999999999999999999999999999999999999999999999999777665533
No 2
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.49 E-value=4.6e-14 Score=111.78 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=69.0
Q ss_pred CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchhh
Q 037438 1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMK 74 (118)
Q Consensus 1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~~ 74 (118)
|+++|+++|.+|++++++.+|+++|.+.+++|++++++|++++||+++..+++|+++|++|+++..+..++|.|
T Consensus 215 gv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~ 288 (293)
T PRK10532 215 AILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK 288 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999877655443
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.43 E-value=2e-13 Score=108.29 Aligned_cols=70 Identities=29% Similarity=0.276 Sum_probs=67.0
Q ss_pred CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438 1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG 70 (118)
Q Consensus 1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~ 70 (118)
|+++|+++|.+|++++++.+|++++.+.+++|++++++|++++||++++.+++|+++|++|+++..|+++
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 4689999999999999999999999999999999999999999999999999999999999999988765
No 4
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.41 E-value=3.3e-13 Score=106.99 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=64.5
Q ss_pred eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438 3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG 70 (118)
Q Consensus 3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~ 70 (118)
++|+++|.+|++++++.+|+++|.+.+++|++++++|++++||++++.+++|+++|+.|+++..+..+
T Consensus 223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 46899999999999999999999999999999999999999999999999999999999999877554
No 5
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.34 E-value=1.4e-12 Score=103.13 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=66.8
Q ss_pred CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccc
Q 037438 1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGN 71 (118)
Q Consensus 1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k 71 (118)
|+++|+++|.+|++++++.++++++.+.+++|++++++|++++||++++.+++|+++|+.|+++..+.+++
T Consensus 219 ~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 219 AVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45789999999999999999999999999999999999999999999999999999999999998876543
No 6
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.18 E-value=6.7e-11 Score=79.70 Aligned_cols=66 Identities=24% Similarity=0.362 Sum_probs=62.7
Q ss_pred CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438 1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~ 66 (118)
|++++++++.+|++++++.+++.++.+.+++|++++++++++++|+++..+++|.++++.|++++.
T Consensus 60 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 60 GLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999864
No 7
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.16 E-value=3.6e-11 Score=94.47 Aligned_cols=63 Identities=21% Similarity=0.246 Sum_probs=60.7
Q ss_pred eeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHH
Q 037438 2 IVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYA 64 (118)
Q Consensus 2 i~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l 64 (118)
.++|+++|.+|++++++.|+++++.+.+++|++++++|++++||+++..+++|+++|+.|+++
T Consensus 218 ~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 218 GLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 467899999999999999999999999999999999999999999999999999999999986
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.16 E-value=6.2e-11 Score=94.05 Aligned_cols=64 Identities=9% Similarity=-0.006 Sum_probs=60.4
Q ss_pred ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438 4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLW 67 (118)
Q Consensus 4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~ 67 (118)
+|+++|.+|++++++.||+++|.+.+++|++++++||+++||++++.+++|+++|+.|+.+...
T Consensus 222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999888777654
No 9
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.12 E-value=1.5e-10 Score=83.97 Aligned_cols=71 Identities=23% Similarity=0.221 Sum_probs=64.9
Q ss_pred CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHH--HhCccchhhhHhHHHHHHHHHHHHHhcccc
Q 037438 1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASL--ILDEKLHLGSVLGATLIMCGLYAVLWGKGN 71 (118)
Q Consensus 1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l--~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k 71 (118)
|+++++++|.+|++++++.+++.+.-+..+.+++..++++. ++||++++.+++|.++|+.|++++.+++++
T Consensus 54 gl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 54 GLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 46789999999999999999999999999999989888885 899999999999999999999998876544
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.11 E-value=3.9e-11 Score=94.79 Aligned_cols=69 Identities=19% Similarity=0.150 Sum_probs=60.0
Q ss_pred hHHHHHHH----HHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchh
Q 037438 5 SGLMVTTT----SWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEM 73 (118)
Q Consensus 5 S~ia~~l~----~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~ 73 (118)
+..++.+| ++++++.||++++++.++.|++++++|++++||++++.+++|+++++.|+++.++.|.+++
T Consensus 227 ~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~ 299 (302)
T TIGR00817 227 AMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKP 299 (302)
T ss_pred HHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCc
Confidence 33355544 4799999999999999999999999999999999999999999999999999987654433
No 11
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.07 E-value=1.5e-10 Score=88.35 Aligned_cols=62 Identities=23% Similarity=0.360 Sum_probs=59.4
Q ss_pred CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHH
Q 037438 1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGL 62 (118)
Q Consensus 1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV 62 (118)
|+++++++|.+|++++++.++.+++.+.+++|+++++++++++||+++..+++|+++++.|+
T Consensus 198 ~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 198 GLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 35678999999999999999999999999999999999999999999999999999999986
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.92 E-value=2.7e-09 Score=80.83 Aligned_cols=68 Identities=25% Similarity=0.402 Sum_probs=64.6
Q ss_pred CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhc
Q 037438 1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG 68 (118)
Q Consensus 1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~ 68 (118)
|++++++++++|++++++.+++.++.+.++.|++++++++++++|+++..+++|+++++.|+.+...+
T Consensus 221 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 221 GVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 35677899999999999999999999999999999999999999999999999999999999998876
No 13
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.86 E-value=3.8e-09 Score=86.43 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=63.0
Q ss_pred eeehHHHHHHHHH----HHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhc
Q 037438 2 IVGSGLMVTTTSW----CVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG 68 (118)
Q Consensus 2 i~~S~ia~~l~~~----~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~ 68 (118)
+++++++|++||+ ++++++|...+++.++.|++++++|++++||++++.+++|+++++.|+++.++.
T Consensus 279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 3568999999995 999999999999999999999999999999999999999999999999997754
No 14
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.80 E-value=1.4e-08 Score=70.57 Aligned_cols=67 Identities=21% Similarity=0.305 Sum_probs=60.9
Q ss_pred ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccc
Q 037438 4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGN 71 (118)
Q Consensus 4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k 71 (118)
+...++.+|.+++++.++ .++....+.|++++++|+++++|+++...++|.+++++|+.+..+...+
T Consensus 44 ~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 44 GFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 345789999999999995 8889999999999999999999999999999999999999999886543
No 15
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.68 E-value=5e-08 Score=68.83 Aligned_cols=64 Identities=17% Similarity=0.104 Sum_probs=59.8
Q ss_pred eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438 3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~ 66 (118)
++-++++++|.+++++.+.+.+.....+.+++++++|++++||++++.+++|.++|+.|+.+.-
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4557789999999999999999999999999999999999999999999999999999998754
No 16
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.63 E-value=2.7e-08 Score=73.53 Aligned_cols=64 Identities=25% Similarity=0.239 Sum_probs=60.2
Q ss_pred eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438 3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~ 66 (118)
.+++++..+|+++++...++++.-.--+.|+++++++++||+|+++..+++|..+|.+|..++.
T Consensus 75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 4678999999999999999999999999999999999999999999999999999999987654
No 17
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.49 E-value=2.7e-07 Score=73.23 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=60.5
Q ss_pred eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438 3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLW 67 (118)
Q Consensus 3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~ 67 (118)
++.++.+.+++|++++.+++.+++..+..|++.+++++++++|+++..+++|.++.+.|+.+..+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999998754
No 18
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.48 E-value=1.6e-07 Score=76.22 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=66.9
Q ss_pred CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchh
Q 037438 1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEM 73 (118)
Q Consensus 1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~ 73 (118)
|+++|++.|.+=..+++++++..-++.+.++|.++++.|+++|||.+++.|++|.++|+.+..=+.+..+|..
T Consensus 216 avlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~ 288 (292)
T COG5006 216 AVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPA 288 (292)
T ss_pred HHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCC
Confidence 4688999999999999999999999999999999999999999999999999999999999887777655443
No 19
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.46 E-value=2.1e-07 Score=74.28 Aligned_cols=66 Identities=20% Similarity=0.200 Sum_probs=61.6
Q ss_pred eeehHHHHHHHHHHHh-hcCccchhhhhhhHHHHHHHHHHHHhCccchhhhH----hHHHHHHHHHHHHHhc
Q 037438 2 IVGSGLMVTTTSWCVH-VRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSV----LGATLIMCGLYAVLWG 68 (118)
Q Consensus 2 i~~S~ia~~l~~~~i~-~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~i----iG~~LIl~GV~l~~~~ 68 (118)
++ ++++|.+|..+.+ +.+++.++....++|+++++++++++||..+..++ +|.++|+.|+.+....
T Consensus 219 i~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 219 LM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 45 7899999999999 99999999999999999999999999999999999 9999999999886543
No 20
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.45 E-value=3.7e-07 Score=69.63 Aligned_cols=65 Identities=17% Similarity=0.076 Sum_probs=60.5
Q ss_pred eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438 3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLW 67 (118)
Q Consensus 3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~ 67 (118)
++..+.+.++++++++.++..+++...+.|++++++++++++|+++..+++|.++.+.|+.+...
T Consensus 55 ~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 55 LQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 45667888999999999999999999999999999999999999999999999999999998754
No 21
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.41 E-value=6.1e-07 Score=70.48 Aligned_cols=65 Identities=23% Similarity=0.157 Sum_probs=60.0
Q ss_pred ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhc
Q 037438 4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG 68 (118)
Q Consensus 4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~ 68 (118)
+.++.+.+++++.++.+++.++.+.+..|++++++++++++|+++..+++|.++++.|+++..+.
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 35577888899999999999999999999999999999999999999999999999999987654
No 22
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.36 E-value=1.2e-06 Score=67.62 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438 5 SGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLW 67 (118)
Q Consensus 5 S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~ 67 (118)
.++.+.++++++++.++..++...+..|++++++++++++|+++..+++|.++.+.|+.+...
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999999999999999999999999999987653
No 23
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.18 E-value=6.9e-06 Score=59.29 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=58.5
Q ss_pred eehHHHHHHHHHHHhhcCccchh-hhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438 3 VGSGLMVTTTSWCVHVRGPLFVS-VFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG 70 (118)
Q Consensus 3 ~~S~ia~~l~~~~i~~~gp~~aS-~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~ 70 (118)
++-+++|+++.+++++++...+= ++.-+.-+.++++|+++++|++++.+++|.++|+.|+...+...+
T Consensus 38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 34567899999999999887764 445688999999999999999999999999999999999876554
No 24
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.10 E-value=4.8e-06 Score=65.84 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438 6 GLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 6 ~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~ 66 (118)
++.+.++++++++.+++.+++...+.|++++++++++++|+++..+++|.++++.|+.+..
T Consensus 76 ~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 76 TIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 5667899999999999999999999999999999999999999999999999999998754
No 25
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.04 E-value=8.9e-06 Score=61.54 Aligned_cols=70 Identities=26% Similarity=0.347 Sum_probs=62.9
Q ss_pred eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHH-HHhCccchhhhHhHHHHHHHHHHHHHhcccch
Q 037438 3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAAS-LILDEKLHLGSVLGATLIMCGLYAVLWGKGNE 72 (118)
Q Consensus 3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~-l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~ 72 (118)
++....+.+|+.++++.++..++...+..|++.+++++ ++++|+++...++|.++.+.|++++.+.....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 45677888999999999999999999999999999997 77799999999999999999999988765443
No 26
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.02 E-value=2.4e-05 Score=55.52 Aligned_cols=67 Identities=10% Similarity=0.153 Sum_probs=58.0
Q ss_pred eehHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcc
Q 037438 3 VGSGLMVTTTSWCVHVRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGK 69 (118)
Q Consensus 3 ~~S~ia~~l~~~~i~~~gp~~a-S~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~ 69 (118)
++-+++|+++..++++++...+ +++.-+.-+.++++|+++++|++++.+++|.++|+.|+.+.+...
T Consensus 38 ~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3456789999999999887766 455668889999999999999999999999999999999987654
No 27
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.01 E-value=1.1e-05 Score=66.97 Aligned_cols=62 Identities=18% Similarity=0.315 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHH------hCccchhhhHhHHHHHHHHHHHHHhc
Q 037438 7 LMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLI------LDEKLHLGSVLGATLIMCGLYAVLWG 68 (118)
Q Consensus 7 ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~------LgE~lt~~~iiG~~LIl~GV~l~~~~ 68 (118)
+.+.++++++++.+|+.+|+..+..|++++++++++ ++|+++..+++|.++-++|+++....
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 355589999999999999999999999999999999 69999999999999999999987653
No 28
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.99 E-value=1.3e-05 Score=63.60 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=53.4
Q ss_pred HHHHHHHHHhh-cCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhc
Q 037438 8 MVTTTSWCVHV-RGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG 68 (118)
Q Consensus 8 a~~l~~~~i~~-~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~ 68 (118)
.+.+++.+.++ .++..+++..++.|+++.++++++++|+++..+++|.++.+.|+++..+.
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 34456677776 57789999999999999999999999999999999999999999987754
No 29
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.91 E-value=2.2e-05 Score=62.12 Aligned_cols=62 Identities=10% Similarity=0.004 Sum_probs=55.7
Q ss_pred HHHHHHHHHHH-hhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhc
Q 037438 6 GLMVTTTSWCV-HVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG 68 (118)
Q Consensus 6 ~ia~~l~~~~i-~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~ 68 (118)
++.+.+++++. ++.++..+++..++.|+++++++++ ++|+++..+++|.++.+.|+++..+.
T Consensus 80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 45677888888 8999999999999999999999986 69999999999999999999998654
No 30
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.89 E-value=2.4e-05 Score=64.14 Aligned_cols=60 Identities=18% Similarity=0.116 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438 8 MVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLW 67 (118)
Q Consensus 8 a~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~ 67 (118)
.+...++++++.+++++++...+.|++++++++++++|+++...++|.++++.|+++...
T Consensus 127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 455677999999999999999999999999999999999999999999999999998653
No 31
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.79 E-value=9e-05 Score=52.79 Aligned_cols=67 Identities=27% Similarity=0.412 Sum_probs=58.6
Q ss_pred eehHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcc
Q 037438 3 VGSGLMVTTTSWCVHVRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGK 69 (118)
Q Consensus 3 ~~S~ia~~l~~~~i~~~gp~~a-S~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~ 69 (118)
++-+++|++..+++|+++-..+ +++.-+..+.+++.|+++++|++++..++|.++|++|+...++..
T Consensus 38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 3457889999999999886654 778888899999999999999999999999999999999887653
No 32
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.73 E-value=0.00011 Score=52.18 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=55.5
Q ss_pred ehHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438 4 GSGLMVTTTSWCVHVRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 4 ~S~ia~~l~~~~i~~~gp~~a-S~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~ 66 (118)
+-+++|++...++++++...+ +++.-+.-+.+++.|+++++|++++.+++|.++|+.|+...+
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 446789999999999887665 667778889999999999999999999999999999998864
No 33
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.70 E-value=0.00016 Score=51.07 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=56.9
Q ss_pred ehHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhc
Q 037438 4 GSGLMVTTTSWCVHVRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG 68 (118)
Q Consensus 4 ~S~ia~~l~~~~i~~~gp~~a-S~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~ 68 (118)
+-+++|++...++++++...+ +++.-+.-+.+++.|+++++|++++.+++|.++|+.|+...+..
T Consensus 38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 456789999999999887665 67777899999999999999999999999999999999987543
No 34
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.69 E-value=7.1e-05 Score=62.11 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=61.6
Q ss_pred ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchh
Q 037438 4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEM 73 (118)
Q Consensus 4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~ 73 (118)
+..+-|.+....++..+|+...+-.....++++++++++.|+++++..++|.++|+.|+.+.....++..
T Consensus 242 ~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~ 311 (334)
T PF06027_consen 242 CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEE 311 (334)
T ss_pred HHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccc
Confidence 3455677778999999999999999999999999999999999999999999999999999887655443
No 35
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.68 E-value=3.9e-05 Score=59.20 Aligned_cols=39 Identities=5% Similarity=0.024 Sum_probs=37.0
Q ss_pred ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHH
Q 037438 4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLI 42 (118)
Q Consensus 4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~ 42 (118)
.|+++|.+|++++++.+|++++.+.|++|++++++|+++
T Consensus 217 ~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 217 ITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 388999999999999999999999999999999999875
No 36
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.67 E-value=9.5e-05 Score=58.66 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=50.4
Q ss_pred HHHHHHHh----hcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhc
Q 037438 10 TTTSWCVH----VRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG 68 (118)
Q Consensus 10 ~l~~~~i~----~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~ 68 (118)
.+++++++ ..++..+++..++.|++++++++++++|+++..+++|.++-++|+++....
T Consensus 76 ~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 76 ICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 33445554 457788899999999999999999999999999999999999999987653
No 37
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.67 E-value=9.1e-05 Score=52.40 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=53.3
Q ss_pred HHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438 9 VTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 9 ~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~ 66 (118)
....++++++.+|...++...+-.++..++|++++||+++..+++|.++.+.|+++..
T Consensus 95 n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 95 NLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 3445689999999999999999999999999999999999999999999999988754
No 38
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.65 E-value=0.00015 Score=57.77 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=62.3
Q ss_pred ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccch
Q 037438 4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNE 72 (118)
Q Consensus 4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~ 72 (118)
+..++....++.+++.||...++...+--++++++++++.|+++++.+++|.++++.|+.+-.+.++|+
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 445666677789999999999999999999999999999999999999999999999999988876654
No 39
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.50 E-value=0.00027 Score=48.16 Aligned_cols=55 Identities=29% Similarity=0.367 Sum_probs=35.2
Q ss_pred ehHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHH
Q 037438 4 GSGLMVTTTSWCVHVRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLI 58 (118)
Q Consensus 4 ~S~ia~~l~~~~i~~~gp~~a-S~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LI 58 (118)
+=+++|+++.+++++.+.+.+ +++.-+..+..+++|++++||++++.+++|..+|
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 346889999999999998888 6777899999999999999999999999999876
No 40
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.48 E-value=6.6e-05 Score=61.96 Aligned_cols=63 Identities=17% Similarity=0.069 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcc
Q 037438 7 LMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGK 69 (118)
Q Consensus 7 ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~ 69 (118)
.+..+.+++.++++-+-+.+..+..|+++++++|++|+|+.+....+|..+.+.||.+..+..
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 356678899999999999999999999999999999999999999999999999999977654
No 41
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.47 E-value=2.7e-05 Score=59.21 Aligned_cols=60 Identities=20% Similarity=0.145 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHH
Q 037438 5 SGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYA 64 (118)
Q Consensus 5 S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l 64 (118)
.++...+-.|++++.+++..+....+.++++++++++++|++++..+++|+.+++.|+++
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 445556678999999999999999999999999999999999999999999999998764
No 42
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.26 E-value=0.00048 Score=56.60 Aligned_cols=64 Identities=20% Similarity=0.180 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438 7 LMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG 70 (118)
Q Consensus 7 ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~ 70 (118)
+...+|.|++.+--...+|+=+++.|++-+++|.+||+|+++..|++..++-.+||..-.|...
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567889999999999999999999999999999999999999999999999999998777544
No 43
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.17 E-value=0.0012 Score=52.18 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=57.9
Q ss_pred HHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccch
Q 037438 10 TTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNE 72 (118)
Q Consensus 10 ~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~ 72 (118)
.+++.++++++|+.--+...+..++++++++++|+.+++..||++..++++|+.+++......
T Consensus 32 ~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 32 NLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 456689999999999999999999999999999999999999999999999999988776544
No 44
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.15 E-value=0.0012 Score=54.22 Aligned_cols=67 Identities=9% Similarity=-0.028 Sum_probs=63.5
Q ss_pred ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438 4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG 70 (118)
Q Consensus 4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~ 70 (118)
.|+++..+|..+-+++.-+..+...|++|..-.++|++++||+++..+++.-++|-+|+.+..+..-
T Consensus 220 vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l 286 (293)
T COG2962 220 VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL 286 (293)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999999999887654
No 45
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.15 E-value=0.00069 Score=54.16 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhcCccchhhhhh-hHHHHHHHHHHHHhCccchhhh----HhHHHHHHHHHHHHHhc
Q 037438 7 LMVTTTSWCVHVRGPLFVSVFTP-LSVVAVAVAASLILDEKLHLGS----VLGATLIMCGLYAVLWG 68 (118)
Q Consensus 7 ia~~l~~~~i~~~gp~~aS~~~~-L~PV~a~llg~l~LgE~lt~~~----iiG~~LIl~GV~l~~~~ 68 (118)
++...|..++++.|.+.+-.+.+ +.|++.++++.+++||+.+..+ ++|.++++.|++++...
T Consensus 71 ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 71 LGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred hhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 34488999999999999988777 8999999999999999999999 99999999999887444
No 46
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.97 E-value=0.0017 Score=51.72 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=63.1
Q ss_pred ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchhh
Q 037438 4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMK 74 (118)
Q Consensus 4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~~ 74 (118)
+..++-.+.++++++++...-.++-...|++.+++++++++++.+..++++.+++.+|+.++...+.+..+
T Consensus 73 ~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 73 LFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 34567788999999999999999999999999999999999999999999999999999998876554444
No 47
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.65 E-value=0.0039 Score=51.82 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438 6 GLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG 70 (118)
Q Consensus 6 ~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~ 70 (118)
+.|-++++.+.++...+-+.+.....-++++++++++|+++.++.|++|.++.+.|+.++.+...
T Consensus 90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 34667888999999999999999999999999999999999999999999999999999877643
No 48
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.51 E-value=0.0095 Score=48.87 Aligned_cols=64 Identities=23% Similarity=0.202 Sum_probs=59.3
Q ss_pred eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438 3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~ 66 (118)
++|+++.++-+.-+...||-..|+....--.|+++.++++++.+++..||+|..+++.|+..=.
T Consensus 249 i~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 249 IASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 4678888888899999999999999999999999999999999999999999999999988744
No 49
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.11 E-value=0.0085 Score=43.04 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhcCccchhhh-hhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHH
Q 037438 7 LMVTTTSWCVHVRGPLFVSVF-TPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAV 65 (118)
Q Consensus 7 ia~~l~~~~i~~~gp~~aS~~-~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~ 65 (118)
.+-.+|++.+++.+-+.+.-. +.+.=+|+++.|+++.+|..+...++|+++|++|+.++
T Consensus 53 ~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 53 SGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 356678888888887776655 57888999999988888888999999999999998763
No 50
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=95.70 E-value=0.0079 Score=49.01 Aligned_cols=63 Identities=25% Similarity=0.242 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438 5 SGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLW 67 (118)
Q Consensus 5 S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~ 67 (118)
-+++..+...+....+++.++-+..+.-++.++++..+|+|+++...++|.++++.|..+.-.
T Consensus 60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 345556666777777888787777888889999999999999999999999999999987554
No 51
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.25 E-value=0.064 Score=45.19 Aligned_cols=60 Identities=18% Similarity=0.120 Sum_probs=54.3
Q ss_pred HHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438 11 TTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG 70 (118)
Q Consensus 11 l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~ 70 (118)
+++.+..+++|+.-...+.+--+.++++++++|+++++..||...++.+.|+.++++...
T Consensus 108 l~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 108 LQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSL 167 (345)
T ss_pred HHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC
Confidence 455778889999999999999999999999999999999999999999999999995443
No 52
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=95.13 E-value=0.0031 Score=52.24 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=57.2
Q ss_pred HHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchhh
Q 037438 11 TTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMK 74 (118)
Q Consensus 11 l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~~ 74 (118)
..++++++.+|..-++...+=-++.++.||+++++++++.+..|.++-+.|+++..+.+.++++
T Consensus 251 s~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 251 SAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred HHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3458899999999999998888899999999999999999999999999999999988766554
No 53
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=94.98 E-value=0.084 Score=42.95 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhcCccchh-hhhhhHHHHHHHHHHHHhCccchhhhHh----HHHHHHHHHHHHHhcccchhh
Q 037438 7 LMVTTTSWCVHVRGPLFVS-VFTPLSVVAVAVAASLILDEKLHLGSVL----GATLIMCGLYAVLWGKGNEMK 74 (118)
Q Consensus 7 ia~~l~~~~i~~~gp~~aS-~~~~L~PV~a~llg~l~LgE~lt~~~ii----G~~LIl~GV~l~~~~~~k~~~ 74 (118)
++-..|+++.+++|.+++- +..-++-+.++++|++++||.-+..+++ +.++|+.|+++..++.+++.+
T Consensus 57 iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~ 129 (269)
T PF06800_consen 57 IGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK 129 (269)
T ss_pred HHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence 4567788999999988764 4446677778999999999987766654 778999999998887665554
No 54
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=94.86 E-value=0.025 Score=47.02 Aligned_cols=63 Identities=14% Similarity=0.031 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438 5 SGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLW 67 (118)
Q Consensus 5 S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~ 67 (118)
..+...+-+.++++=-|..+|+..+..-++|.++-++|+|+..+++++.|+++|+.....+-.
T Consensus 263 gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 263 GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVAL 325 (346)
T ss_pred hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHH
Confidence 345667778889888899999999999999999999999999999999999999988766543
No 55
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.38 E-value=0.056 Score=46.37 Aligned_cols=73 Identities=19% Similarity=0.205 Sum_probs=65.3
Q ss_pred CeeehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchh
Q 037438 1 GIVGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEM 73 (118)
Q Consensus 1 Gi~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~ 73 (118)
|+++|+++=++|.|++-...|..+.+-+.+.--.|++...++=|-.+++..++|.+.|+.|.++++.......
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~ 396 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSK 396 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccc
Confidence 3568899999999999999999999999888888999999999999999999999999999999987654433
No 56
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=93.90 E-value=0.053 Score=38.86 Aligned_cols=30 Identities=20% Similarity=0.239 Sum_probs=27.8
Q ss_pred HHHHHHHhCccchhhhHhHHHHHHHHHHHH
Q 037438 36 AVAASLILDEKLHLGSVLGATLIMCGLYAV 65 (118)
Q Consensus 36 ~llg~l~LgE~lt~~~iiG~~LIl~GV~l~ 65 (118)
+.+++++++|++++.++.|.++++.+++++
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 778899999999999999999999998875
No 57
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.67 E-value=0.14 Score=36.74 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=29.6
Q ss_pred HHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438 36 AVAASLILDEKLHLGSVLGATLIMCGLYAVLW 67 (118)
Q Consensus 36 ~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~ 67 (118)
+.|+++.|+|++.+.++.|+++++.|+++..+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 67899999999999999999999999998754
No 58
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=93.28 E-value=0.051 Score=43.70 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438 8 MVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG 70 (118)
Q Consensus 8 a~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~ 70 (118)
+-++|..+++++.|+.++....-.-.|..+++|+.|++++....++.+++-+.|+.+..+...
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 457899999999999999999999999999999999999999999999999999877555443
No 59
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.93 E-value=0.35 Score=40.50 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=51.9
Q ss_pred HHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438 14 WCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG 70 (118)
Q Consensus 14 ~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~ 70 (118)
-.++.-||..+++....--.++.+++++++..++|..+.-|+.+|+.|+++-..+++
T Consensus 279 alI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 279 ALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 456778999999999999999999999999999999999999999999999887763
No 60
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=92.78 E-value=0.22 Score=39.41 Aligned_cols=57 Identities=18% Similarity=0.064 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438 5 SGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLW 67 (118)
Q Consensus 5 S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~ 67 (118)
.++.+.++++++++.++..++...+..|+++++++. |+.. ...+.++.++|+++..+
T Consensus 81 ~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~~ 137 (293)
T PRK10532 81 LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLLP 137 (293)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheeee
Confidence 355677889999999999999999999999998873 5554 34566777888887653
No 61
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=92.05 E-value=0.29 Score=39.90 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhh----hHhHHHHHHHHHH
Q 037438 7 LMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLG----SVLGATLIMCGLY 63 (118)
Q Consensus 7 ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~----~iiG~~LIl~GV~ 63 (118)
++-..|..+.++.|.+.+-.+.-+..+++++.|.++|||.-+.. .++|.++|+.|..
T Consensus 207 ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 207 IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 45566788899999999999999999999999999999998866 4567777777654
No 62
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=91.76 E-value=0.44 Score=40.24 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=53.1
Q ss_pred HHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccch
Q 037438 10 TTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNE 72 (118)
Q Consensus 10 ~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~ 72 (118)
.+-.+.+|+.+-..=+....+.-+++++.++.+.+-+++...++|..+++..+++....+.++
T Consensus 265 Llvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 265 LLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 445567777777777777888999999999999999999999999999999999988555554
No 63
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.71 E-value=0.13 Score=43.02 Aligned_cols=66 Identities=11% Similarity=0.171 Sum_probs=57.3
Q ss_pred ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcc
Q 037438 4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGK 69 (118)
Q Consensus 4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~ 69 (118)
|.+++...-++-+++-||..-.+.+..=-+++++++.+..|.++.+-|++|..+++.|+++-..-+
T Consensus 250 ~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k 315 (327)
T KOG1581|consen 250 CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLK 315 (327)
T ss_pred hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHH
Confidence 345555666778899999999999999999999999999999999999999999999999865433
No 64
>PRK13499 rhamnose-proton symporter; Provisional
Probab=91.32 E-value=0.65 Score=39.00 Aligned_cols=68 Identities=10% Similarity=0.043 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccc-------hhhhHhHHHHHHHHHHHHHhcccchhh
Q 037438 7 LMVTTTSWCVHVRGPLFV-SVFTPLSVVAVAVAASLILDEKL-------HLGSVLGATLIMCGLYAVLWGKGNEMK 74 (118)
Q Consensus 7 ia~~l~~~~i~~~gp~~a-S~~~~L~PV~a~llg~l~LgE~l-------t~~~iiG~~LIl~GV~l~~~~~~k~~~ 74 (118)
++-..|..++++.|-+.+ ++-.-+.-+++++++.+++||-- ....++|.++++.|+.+..+...++.+
T Consensus 85 iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~ 160 (345)
T PRK13499 85 IGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKER 160 (345)
T ss_pred hhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 455677788899987765 45566778889999999998743 345788999999999999985544433
No 65
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=90.39 E-value=0.22 Score=41.53 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=43.9
Q ss_pred cCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH--hcccc
Q 037438 19 RGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL--WGKGN 71 (118)
Q Consensus 19 ~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~--~~~~k 71 (118)
..+-.+++...+=-.+..+++.+.+..++++++++|+++++.|-++.. |.+.|
T Consensus 266 ~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~ 320 (330)
T KOG1583|consen 266 TSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHPK 320 (330)
T ss_pred ecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 345566777778888999999999999999999999999999988754 55544
No 66
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=90.39 E-value=0.36 Score=40.53 Aligned_cols=64 Identities=11% Similarity=0.052 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhc
Q 037438 5 SGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWG 68 (118)
Q Consensus 5 S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~ 68 (118)
-+.+..+++.++....|+---+.=--.-+|+.+|+.-+|+.+++..+|+|...+.+|+..+-..
T Consensus 96 Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 96 DIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 3456677777777766665555555678999999999999999999999999999999886643
No 67
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=88.66 E-value=0.27 Score=42.27 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccch
Q 037438 7 LMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNE 72 (118)
Q Consensus 7 ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~ 72 (118)
+|-+.++-+++....+-..+.....-+|+..+|.+|.+|++++.-+++.++=+.|+.++..+..++
T Consensus 171 ~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 171 LANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 355677788888888888888899999999999999999999999999999999999988775544
No 68
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=87.85 E-value=0.91 Score=34.26 Aligned_cols=27 Identities=4% Similarity=0.071 Sum_probs=20.6
Q ss_pred HhhcCccchhhhhhhHHHHHHHHHHHH
Q 037438 16 VHVRGPLFVSVFTPLSVVAVAVAASLI 42 (118)
Q Consensus 16 i~~~gp~~aS~~~~L~PV~a~llg~l~ 42 (118)
+......++|+..|+.|+++.+++.++
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788999999999997776554
No 69
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=87.44 E-value=0.95 Score=32.32 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=21.1
Q ss_pred CccchhhhhhhHHHHHHHHHHHHhCccch
Q 037438 20 GPLFVSVFTPLSVVAVAVAASLILDEKLH 48 (118)
Q Consensus 20 gp~~aS~~~~L~PV~a~llg~l~LgE~lt 48 (118)
...+++++.|+.|+++.+++.++ +..+.
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l-~~~~~ 93 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVL-GSYLG 93 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 44578999999999999888665 34433
No 70
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=86.69 E-value=0.4 Score=39.21 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=46.1
Q ss_pred ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHH
Q 037438 4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATL 57 (118)
Q Consensus 4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~L 57 (118)
|++.--++-.||++..+.+.-|+.-.+.-.-.++.|.++++|+.+...+....+
T Consensus 233 ~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sill 286 (309)
T COG5070 233 CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILL 286 (309)
T ss_pred HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHH
Confidence 344445566799999999999999999999999999999999999999887654
No 71
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=85.04 E-value=2.1 Score=29.06 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=38.9
Q ss_pred chhhhhhhHHHHHHHHHHHHhCccch-----------hhhHhHHHHHHHHHHHHH-hcccchhhhhccc
Q 037438 23 FVSVFTPLSVVAVAVAASLILDEKLH-----------LGSVLGATLIMCGLYAVL-WGKGNEMKKQSQL 79 (118)
Q Consensus 23 ~aS~~~~L~PV~a~llg~l~LgE~lt-----------~~~iiG~~LIl~GV~l~~-~~~~k~~~~~~~~ 79 (118)
..|+...+.|.+.+..|+-++.+.+. ...+.|.++...|+++.- |--.|++|+++.+
T Consensus 4 ~iAlliLvIPg~~a~yGiklMRD~~F~~~~~p~~~lwlqfl~G~~lf~~G~~Fi~GfI~~RDRKrnkV~ 72 (77)
T PF11118_consen 4 FIALLILVIPGILAAYGIKLMRDTVFGILFSPFPSLWLQFLAGLLLFAIGVGFIAGFILHRDRKRNKVQ 72 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhHhheeeccccccc
Confidence 35778888999998888777665443 234678888889988754 4445555555544
No 72
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=84.58 E-value=0.14 Score=41.94 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhcCccchhh-hhhhHHHHHHHHHHHHhCccchhhhHh----HHHHHHHHHHHHHhccc
Q 037438 7 LMVTTTSWCVHVRGPLFVSV-FTPLSVVAVAVAASLILDEKLHLGSVL----GATLIMCGLYAVLWGKG 70 (118)
Q Consensus 7 ia~~l~~~~i~~~gp~~aS~-~~~L~PV~a~llg~l~LgE~lt~~~ii----G~~LIl~GV~l~~~~~~ 70 (118)
++...|.++++..|.+++.= ..-.+-+-+.++|++++||--+..+++ ..++|+.|+++..|+++
T Consensus 71 ~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 71 FGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 34556778888888887753 344666778999999999999988764 55888999998777654
No 73
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.47 E-value=0.13 Score=43.12 Aligned_cols=55 Identities=31% Similarity=0.405 Sum_probs=43.0
Q ss_pred cCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchh
Q 037438 19 RGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEM 73 (118)
Q Consensus 19 ~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~ 73 (118)
.+++.++-.-.+.-++.++++..+|+|.+++...+|+++.+.|-++.-...++++
T Consensus 88 APasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~ 142 (335)
T KOG2922|consen 88 APASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQ 142 (335)
T ss_pred chHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccc
Confidence 3555555566677888999999999999999999999999999776554444433
No 74
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=84.45 E-value=1.6 Score=32.41 Aligned_cols=23 Identities=4% Similarity=0.027 Sum_probs=18.3
Q ss_pred CccchhhhhhhHHHHHHHHHHHH
Q 037438 20 GPLFVSVFTPLSVVAVAVAASLI 42 (118)
Q Consensus 20 gp~~aS~~~~L~PV~a~llg~l~ 42 (118)
...++++..|+.|+++.++|.++
T Consensus 73 ~llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 73 SLLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999998887554
No 75
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=83.22 E-value=0.81 Score=35.40 Aligned_cols=62 Identities=16% Similarity=0.263 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccch-hhhHhHH-HHHHHHHHHHH
Q 037438 5 SGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLH-LGSVLGA-TLIMCGLYAVL 66 (118)
Q Consensus 5 S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt-~~~iiG~-~LIl~GV~l~~ 66 (118)
..++|.+...-+....+...+.+..+.|..+..+|..+-+=-.. +.+++|+ ++++.|+++..
T Consensus 17 vgi~~G~~~~~~~~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 17 VGIAYGLRKIKIPFLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 34455433322233455666777778888888888776542223 3556665 56677888765
No 76
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=83.13 E-value=4.1 Score=29.53 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhcCccchhhhhhhHHHHH-HHHHHH----HhCccchhhhHhHHHHHHHHHHH
Q 037438 6 GLMVTTTSWCVHVRGPLFVSVFTPLSVVAV-AVAASL----ILDEKLHLGSVLGATLIMCGLYA 64 (118)
Q Consensus 6 ~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a-~llg~l----~LgE~lt~~~iiG~~LIl~GV~l 64 (118)
++-....++.+.++|++.+.......-+++ .++..+ .-..++++..++|.++++.|+++
T Consensus 75 ~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 75 VFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 444566778899999998887766655444 455554 34589999999999999999864
No 77
>PRK13499 rhamnose-proton symporter; Provisional
Probab=81.98 E-value=5.6 Score=33.44 Aligned_cols=61 Identities=18% Similarity=0.075 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhcCccchhh---hh-hhHHHHHHHHHHHHhCccch------hhhHhHHHHHHHHHHHHHhc
Q 037438 7 LMVTTTSWCVHVRGPLFVSV---FT-PLSVVAVAVAASLILDEKLH------LGSVLGATLIMCGLYAVLWG 68 (118)
Q Consensus 7 ia~~l~~~~i~~~gp~~aS~---~~-~L~PV~a~llg~l~LgE~lt------~~~iiG~~LIl~GV~l~~~~ 68 (118)
+++..|.++-.+.|...+.. +. -+.-+++.+.|. +|+|.-+ ...++|.++++.|..+...+
T Consensus 272 ~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 272 LQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 45667777788887665544 33 445588888888 5999999 67799999999999887654
No 78
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=81.70 E-value=2.4 Score=30.86 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhcCccchh-hhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHH
Q 037438 8 MVTTTSWCVHVRGPLFVS-VFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAV 65 (118)
Q Consensus 8 a~~l~~~~i~~~gp~~aS-~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~ 65 (118)
+-.+|++-+++.+-+.+. ..+.+.-.|++++|..+-.|.-.-..++|..+|++|+.++
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 346788888888877655 3455677888999977655555566788999999999875
No 79
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=81.61 E-value=6.9 Score=29.04 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=14.7
Q ss_pred HhHHHHHHHHHHHHHhcccchh
Q 037438 52 VLGATLIMCGLYAVLWGKGNEM 73 (118)
Q Consensus 52 iiG~~LIl~GV~l~~~~~~k~~ 73 (118)
.+|.+++..|++.....++...
T Consensus 47 Alg~vL~~~g~~~~~~~~~~~~ 68 (191)
T PF04156_consen 47 ALGVVLLSLGLLCLLSKRPVQS 68 (191)
T ss_pred HHHHHHHHHHHHHHHHcccccc
Confidence 4577888888877766554443
No 80
>PRK02237 hypothetical protein; Provisional
Probab=81.19 E-value=8.8 Score=27.58 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438 32 VVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG 70 (118)
Q Consensus 32 PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~ 70 (118)
-+.+.+.+|++=|.+++.+.++|+++.+.|+.+..+..|
T Consensus 70 I~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 70 VAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 355568899999999999999999999999998876654
No 81
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=80.50 E-value=2.8 Score=35.44 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=44.8
Q ss_pred HHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHH
Q 037438 15 CVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAV 65 (118)
Q Consensus 15 ~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~ 65 (118)
.+.+.+....|++.-.-=+.+.++|.+++++.++..-+.|..+.+.|+.+-
T Consensus 263 Ll~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 263 LLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred eeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 455677777888888888889999999999999999999999999998875
No 82
>PF13994 PgaD: PgaD-like protein
Probab=79.96 E-value=2.8 Score=30.37 Aligned_cols=53 Identities=17% Similarity=0.364 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhcccchhhhh----cccCCCCCCCcccceEEEeecCChHHHHHhhhcc
Q 037438 54 GATLIMCGLYAVLWGKGNEMKKQ----SQLVPAANTSKESESIEISITSPNEEIKELNDSR 110 (118)
Q Consensus 54 G~~LIl~GV~l~~~~~~k~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (118)
..++++.++.++.|.+.+..|.. -..++.+++.+-|++..++ ++++.|+.+++
T Consensus 68 ~~i~~~~a~~Li~Wa~yn~~Rf~~~~rr~~~~~~~~~elA~~f~l~----~~~l~~lr~~k 124 (138)
T PF13994_consen 68 LLIALVNAVILILWAKYNRLRFRGRRRRRRPPPVSDEELARSFGLS----PEQLQQLRQAK 124 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhccCCCCCCHHHHHHHcCCC----HHHHHHHHhCC
Confidence 33666667777777764433311 1122225555556665554 78888888765
No 83
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.31 E-value=5.6 Score=29.91 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=34.6
Q ss_pred HHHhhcCccchh-hhhhhHHHHHHHHHHHHhC----ccchhhhHhHHHHHHHHHHHHHhcc
Q 037438 14 WCVHVRGPLFVS-VFTPLSVVAVAVAASLILD----EKLHLGSVLGATLIMCGLYAVLWGK 69 (118)
Q Consensus 14 ~~i~~~gp~~aS-~~~~L~PV~a~llg~l~Lg----E~lt~~~iiG~~LIl~GV~l~~~~~ 69 (118)
+...++|++.+- ....-+-+.+.++..+=+. .+++...++|.+++++|+++..+.+
T Consensus 88 ~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 88 LLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 344444544332 2233344444555555444 7899999999999999977766543
No 84
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.04 E-value=0.56 Score=39.25 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=47.8
Q ss_pred HHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHH
Q 037438 10 TTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYA 64 (118)
Q Consensus 10 ~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l 64 (118)
...|.|++.+|.++-=+-=.+..+|++++.+++|+++=+..-..++.+|+.|..+
T Consensus 117 ~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 117 SFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred hccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee
Confidence 4457888888888776667789999999999999999999999999999999655
No 85
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=77.68 E-value=2.4 Score=33.49 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHH
Q 037438 5 SGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLI 58 (118)
Q Consensus 5 S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LI 58 (118)
.+++=.+-.+.+|+.+...=..-..+.-+++++++++++|.+++...++|++++
T Consensus 191 ~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 191 QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 344455667788999998888888999999999999999999999999998763
No 86
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=76.91 E-value=13 Score=32.51 Aligned_cols=46 Identities=7% Similarity=0.110 Sum_probs=30.3
Q ss_pred hhhhhhhHHHHHHHHHHHHhCc-----cchhhhHhHHHHHHHHHHHHHhcc
Q 037438 24 VSVFTPLSVVAVAVAASLILDE-----KLHLGSVLGATLIMCGLYAVLWGK 69 (118)
Q Consensus 24 aS~~~~L~PV~a~llg~l~LgE-----~lt~~~iiG~~LIl~GV~l~~~~~ 69 (118)
.++|+.+--++=.++-++=-+. .++..|++...+++.|+++..+.+
T Consensus 226 f~lYli~Ygi~RF~iEflR~d~~~~~~gl~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 226 FGFYVAFYCAGRFCVELLRDDPATLIAGIRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhhcCccHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555555555431111 278999999999999998877644
No 87
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=76.46 E-value=5.2 Score=32.57 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=45.4
Q ss_pred ehHHHHHHHHHHHhhcCccchh-hhhhhHHHHHHHHHHHHhCccch--h----hhHhHHHHHHHHHHHHHhcc
Q 037438 4 GSGLMVTTTSWCVHVRGPLFVS-VFTPLSVVAVAVAASLILDEKLH--L----GSVLGATLIMCGLYAVLWGK 69 (118)
Q Consensus 4 ~S~ia~~l~~~~i~~~gp~~aS-~~~~L~PV~a~llg~l~LgE~lt--~----~~iiG~~LIl~GV~l~~~~~ 69 (118)
+.+.-....|+++++-+++.+. +++-+-..++++-|.++.+|.-. . ....|..+++.|+++....+
T Consensus 222 ~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 222 TAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSK 294 (300)
T ss_pred HHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccC
Confidence 3444556667888888887654 45555566777777888887544 3 45677888999998876543
No 88
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=75.24 E-value=0.61 Score=39.33 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=59.2
Q ss_pred eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438 3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG 70 (118)
Q Consensus 3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~ 70 (118)
++|++-..+-||+.+.+.-+.-.+.-.-.++|-.+||.+|==|++++....-..+|..|+++..+...
T Consensus 92 lata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT 159 (349)
T KOG1443|consen 92 LATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST 159 (349)
T ss_pred hhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc
Confidence 35666667789999999999999999999999999999999999999999999999999988776543
No 89
>PRK11469 hypothetical protein; Provisional
Probab=73.54 E-value=2.4 Score=32.47 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=32.0
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHH-HHHHHHHHHHH
Q 037438 21 PLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGA-TLIMCGLYAVL 66 (118)
Q Consensus 21 p~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~-~LIl~GV~l~~ 66 (118)
+-..+.+..+.|+++..+|..+-+=...+.+++|+ ++++.|+++..
T Consensus 40 ~l~~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 40 GLIFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446788888999888888765554556677776 45566887765
No 90
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=72.70 E-value=14 Score=26.97 Aligned_cols=63 Identities=14% Similarity=0.269 Sum_probs=44.1
Q ss_pred eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchhh
Q 037438 3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMK 74 (118)
Q Consensus 3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~~ 74 (118)
++.++-|..-.+..|+-|+++.+.+ .-+++.+.|.+++. + ++.++| -+.|.++.++-++|+.+
T Consensus 42 l~~~~d~~~~~~~ak~~G~s~~~~~---ga~iG~IvG~f~~~-p--~G~iiG---~~~Ga~l~El~~~~~~~ 104 (140)
T PF04306_consen 42 LGEVLDYLAGAYGAKRFGASRWGIW---GAIIGGIVGFFVLP-P--LGLIIG---PFLGAFLGELLRGKDFR 104 (140)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHH---HHHHHHHHHHHHhh-H--HHHHHH---HHHHHHHHHHHhCCCHH
Confidence 4567788899999999999999987 45667777777655 1 133333 34588888875555544
No 91
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=72.40 E-value=5.3 Score=28.62 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438 30 LSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG 70 (118)
Q Consensus 30 L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~ 70 (118)
+--+.+.+.+|.+=+.++..+.++|+++.+.|+.+..+.+|
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 33456678888999999999999999999999999887654
No 92
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=71.63 E-value=0.4 Score=39.84 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438 7 LMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 7 ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~ 66 (118)
++.++-|-+.++...+++=+.-.+.|++++++++++.+|+.+...+.-...|..|+.+..
T Consensus 95 ~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias 154 (316)
T KOG1441|consen 95 ISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIAS 154 (316)
T ss_pred HHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEee
Confidence 455566778888899999999999999999999999999988765555555555544433
No 93
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=70.06 E-value=6.1 Score=23.55 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCccchhhhHhHHHHHHHHHHH
Q 037438 32 VVAVAVAASLILDEKLHLGSVLGATLIMCGLYA 64 (118)
Q Consensus 32 PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l 64 (118)
|+.+.+.|.+.|=-+--..-++|.-+|+.|+.-
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~lg 33 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLLG 33 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999888889999999999999864
No 94
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.19 E-value=10 Score=31.82 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=50.3
Q ss_pred HHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchhh
Q 037438 12 TSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMK 74 (118)
Q Consensus 12 ~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~~ 74 (118)
-.||.+..+++..++.-...-..+.+-+.++.++++++..++|..+=++|=.+.+..+.++++
T Consensus 245 s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~ 307 (314)
T KOG1444|consen 245 SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK 307 (314)
T ss_pred HHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence 459999999999999887777777888888889999999999998877776666655544433
No 95
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.25 E-value=1.8 Score=36.30 Aligned_cols=52 Identities=23% Similarity=0.105 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchhhhhcccCCCCC
Q 037438 33 VAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMKKQSQLVPAAN 84 (118)
Q Consensus 33 V~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~~~~~~~~~~~~ 84 (118)
..-.++++.+++|..+..-+-|-++|+.|-.+..|.|..+.++.+++.+..+
T Consensus 293 ~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~s~~~ 344 (347)
T KOG1442|consen 293 AAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQRSPAT 344 (347)
T ss_pred HHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccCCCccc
Confidence 3347899999999999999999999999999999999888887777665544
No 96
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=60.75 E-value=11 Score=23.65 Aligned_cols=54 Identities=7% Similarity=0.052 Sum_probs=32.5
Q ss_pred hHHHHHHHHHH--HhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHH
Q 037438 5 SGLMVTTTSWC--VHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLI 58 (118)
Q Consensus 5 S~ia~~l~~~~--i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LI 58 (118)
.++++.+...- +...-+...+.+..+.|..+..+|..+.+-.-...+++|+++.
T Consensus 8 vg~~~g~~~~~~~~~~~~~~~ig~~~~~~~~~G~~~G~~~~~~~~~~~~~igg~iL 63 (67)
T PF02659_consen 8 VGISYGLRGISRRIILLIALIIGIFQFIMPLLGLLLGRRLGRFIGSYAEWIGGIIL 63 (67)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444222 2334455566777888888888888777655555666666543
No 97
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=60.43 E-value=9.5 Score=32.28 Aligned_cols=50 Identities=16% Similarity=0.128 Sum_probs=36.3
Q ss_pred hhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438 17 HVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 17 ~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~ 66 (118)
|..+++.=.+.=.+-..+-.+++..+..|.++.-|+.|.++.+.|+++.+
T Consensus 284 k~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 284 KELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred HHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555556666667789999999999999999999855
No 98
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=58.01 E-value=10 Score=31.87 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchhhh
Q 037438 29 PLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMKK 75 (118)
Q Consensus 29 ~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~~~ 75 (118)
.-.++..+++||+++|.+-+..|+...+++-.|+.++.....++-+.
T Consensus 99 sgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 99 SGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred cCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 34678899999999999999999999999999999999877666554
No 99
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=56.84 E-value=11 Score=31.58 Aligned_cols=55 Identities=9% Similarity=-0.011 Sum_probs=41.7
Q ss_pred HHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHH
Q 037438 9 VTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAV 65 (118)
Q Consensus 9 ~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~ 65 (118)
|.+.-..+|..|++...+-....-.++.+. ..+|=++.|.-.+..+.+..|+.+.
T Consensus 243 Ysl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiY 297 (336)
T KOG2766|consen 243 YSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIY 297 (336)
T ss_pred HHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEe
Confidence 334446677788888777777777777777 4456669999999999999998775
No 100
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=56.76 E-value=6.6 Score=32.53 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccc
Q 037438 29 PLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGN 71 (118)
Q Consensus 29 ~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k 71 (118)
.--||=.+++|+++++..-+|.-+.-..+|+.|+.+..+...|
T Consensus 119 ScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K 161 (337)
T KOG1580|consen 119 SCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK 161 (337)
T ss_pred cCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence 3456667899999999999999999999999999999986443
No 101
>PLN02822 serine palmitoyltransferase
Probab=55.33 E-value=2.8 Score=35.94 Aligned_cols=59 Identities=10% Similarity=0.030 Sum_probs=44.0
Q ss_pred HHhCccchhhhHhHHHHHHHHHHHHHhcccch--hhhhcccCCCCCCCcccceEEEeecCC
Q 037438 41 LILDEKLHLGSVLGATLIMCGLYAVLWGKGNE--MKKQSQLVPAANTSKESESIEISITSP 99 (118)
Q Consensus 41 l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (118)
+++|.......++-.+|++..+++....+.+. .+-.+.+.+..-.+|+-||++-..++.
T Consensus 28 ~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~l~~~~~~~ 88 (481)
T PLN02822 28 VVFGVHIGGHLVVEGLLIVVIVFLLSQKSYKPPKRPLTEKEIDELCDEWTPEPLIPPITEE 88 (481)
T ss_pred eEeecCCCchhHHHHHHHHHHHHHHHcCcCCCCCCCCCHHHHHHHHhcCCCCCCCCCCchh
Confidence 46688899999999999999999987554332 233355666777799999999665544
No 102
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=53.00 E-value=12 Score=30.25 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=19.0
Q ss_pred hhhhHhHHHHHHHHHHHHHhcccch
Q 037438 48 HLGSVLGATLIMCGLYAVLWGKGNE 72 (118)
Q Consensus 48 t~~~iiG~~LIl~GV~l~~~~~~k~ 72 (118)
.+..++|.+++++|..+...-|...
T Consensus 115 ~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 115 PWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hHHHHHHHHHHHHHHHheeeecCCC
Confidence 4667899999999988877655544
No 103
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=52.29 E-value=13 Score=26.95 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHhcccchh
Q 037438 53 LGATLIMCGLYAVLWGKGNEM 73 (118)
Q Consensus 53 iG~~LIl~GV~l~~~~~~k~~ 73 (118)
.|.+++++.++++.++++|+.
T Consensus 75 aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 355555555555555444443
No 104
>PF14963 CAML: Calcium signal-modulating cyclophilin ligand
Probab=51.99 E-value=16 Score=29.90 Aligned_cols=56 Identities=23% Similarity=0.254 Sum_probs=42.5
Q ss_pred eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHH---HHHhCccchhhhHhHHHHHHHHHH
Q 037438 3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAA---SLILDEKLHLGSVLGATLIMCGLY 63 (118)
Q Consensus 3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg---~l~LgE~lt~~~iiG~~LIl~GV~ 63 (118)
.|+.+|..+-.|+.+++ ++|.++..+=.+.+| ++--+|.-....++-++|++.||-
T Consensus 166 g~~~lAv~VR~fvCkyL-----si~~pfl~l~l~~~gl~~~~~k~~k~~~~tvltaaL~lsGip 224 (263)
T PF14963_consen 166 GCALLAVFVRLFVCKYL-----SIFAPFLTLQLAYMGLSKYFPKGEKKAKTTVLTAALLLSGIP 224 (263)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcchhhcccccccCcchHHHHHHHHcCCC
Confidence 36778888999999987 555555555556666 677788888888999999888863
No 105
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=51.63 E-value=6.6 Score=31.87 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=29.7
Q ss_pred hhcccCCCCCCCcccceEEEeecCChHHHHHhhhccCCC
Q 037438 75 KQSQLVPAANTSKESESIEISITSPNEEIKELNDSRKGD 113 (118)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (118)
+....++-..+|++-.+.......+++|+.+-..+++||
T Consensus 210 e~~~~e~~~~is~~~~~~~~~~~~~~~~~~~s~~~~~~d 248 (248)
T KOG0913|consen 210 EVELEEALEGISKQESPTDTDVEEDSLEQRKSQKADKGD 248 (248)
T ss_pred ccccchhccccccCCCCCCchhhhhhHHHhhhhhhhccC
Confidence 334455556678888889999999999888777777776
No 106
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=49.89 E-value=12 Score=26.59 Aligned_cols=12 Identities=25% Similarity=0.125 Sum_probs=7.3
Q ss_pred ccCCCCCCCccc
Q 037438 78 QLVPAANTSKES 89 (118)
Q Consensus 78 ~~~~~~~~~~~~ 89 (118)
.....-.+.|-+
T Consensus 30 G~~P~~gt~w~~ 41 (130)
T PF12273_consen 30 GLQPIYGTRWMA 41 (130)
T ss_pred CCCCcCCceecC
Confidence 555666666655
No 107
>PRK10489 enterobactin exporter EntS; Provisional
Probab=49.48 E-value=49 Score=26.52 Aligned_cols=54 Identities=17% Similarity=0.089 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhC-ccchhhhHhHHHHHHHHHHHHHhcccchhhhhcccCCCCC
Q 037438 31 SVVAVAVAASLILD-EKLHLGSVLGATLIMCGLYAVLWGKGNEMKKQSQLVPAAN 84 (118)
Q Consensus 31 ~PV~a~llg~l~Lg-E~lt~~~iiG~~LIl~GV~l~~~~~~k~~~~~~~~~~~~~ 84 (118)
.++-..+.|++.-. .......+.|+...+.++.+....++.++++.++.+++..
T Consensus 361 ~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (417)
T PRK10489 361 DAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDAS 415 (417)
T ss_pred HhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCCC
Confidence 33444555554421 1122233445555555666555544444444455555444
No 108
>COG2149 Predicted membrane protein [Function unknown]
Probab=49.01 E-value=25 Score=25.73 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=16.0
Q ss_pred cchhhhHhHHHHHHHHHHHHHhc
Q 037438 46 KLHLGSVLGATLIMCGLYAVLWG 68 (118)
Q Consensus 46 ~lt~~~iiG~~LIl~GV~l~~~~ 68 (118)
+....+.+|..+|+.|+.+.-.+
T Consensus 52 ~~~~r~~lg~fii~~gil~~a~g 74 (120)
T COG2149 52 TPVIRELLGVFLILVGILLAALG 74 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 55567777888888888775533
No 109
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=47.90 E-value=17 Score=27.38 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=38.5
Q ss_pred hhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438 26 VFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG 70 (118)
Q Consensus 26 ~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~ 70 (118)
.+....+++.++.++.+.+++.+..+++..+++..|+....+...
T Consensus 9 ~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~ 53 (222)
T TIGR00803 9 IFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDD 53 (222)
T ss_pred HHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHH
Confidence 455677899999999999999999999999999999988666543
No 110
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=47.71 E-value=50 Score=28.40 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhH---HHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438 5 SGLMVTTTSWCVHVRGPLFVSVFTPLS---VVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 5 S~ia~~l~~~~i~~~gp~~aS~~~~L~---PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~ 66 (118)
-..+.+++.+..++.|+.+++++.... .+...+.+++..+.+. ..+...+.+.|+.++.
T Consensus 306 Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~---~~~s~~~l~~gi~~SR 367 (432)
T PF06963_consen 306 GLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF---SSISAYLLLGGIALSR 367 (432)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHHHHHH
Confidence 356788999999999999999887654 3344555666666554 4455566666777665
No 111
>PRK15049 L-asparagine permease; Provisional
Probab=47.41 E-value=1.5e+02 Score=25.41 Aligned_cols=12 Identities=8% Similarity=0.113 Sum_probs=6.5
Q ss_pred hhhHHHHHHHHH
Q 037438 28 TPLSVVAVAVAA 39 (118)
Q Consensus 28 ~~L~PV~a~llg 39 (118)
.+..++++.++.
T Consensus 422 ~p~~~~~~l~~~ 433 (499)
T PRK15049 422 APFTSWLTLLFL 433 (499)
T ss_pred ccHHHHHHHHHH
Confidence 566666654433
No 112
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=47.19 E-value=29 Score=29.45 Aligned_cols=65 Identities=14% Similarity=0.048 Sum_probs=44.5
Q ss_pred HHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCc-------cchhhhHhHHHHHHHHHHHHHhcccchhh
Q 037438 10 TTTSWCVHVRGPLFV-SVFTPLSVVAVAVAASLILDE-------KLHLGSVLGATLIMCGLYAVLWGKGNEMK 74 (118)
Q Consensus 10 ~l~~~~i~~~gp~~a-S~~~~L~PV~a~llg~l~LgE-------~lt~~~iiG~~LIl~GV~l~~~~~~k~~~ 74 (118)
..|..+++++|-+.. |+..-+.-++++++--++.|+ +-....++|.++.+.|+.++-+....+.|
T Consensus 88 ltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~ 160 (344)
T PF06379_consen 88 LTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEK 160 (344)
T ss_pred hhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhh
Confidence 456677888886653 455556667777776666443 33457789999999999998877544444
No 113
>PF15345 TMEM51: Transmembrane protein 51
Probab=47.04 E-value=16 Score=29.48 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHhcccchhh
Q 037438 53 LGATLIMCGLYAVLWGKGNEMK 74 (118)
Q Consensus 53 iG~~LIl~GV~l~~~~~~k~~~ 74 (118)
.|.+|.+..+++..+.|+|++.
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3556666666666665554444
No 114
>PF15471 TMEM171: Transmembrane protein family 171
Probab=46.80 E-value=29 Score=28.98 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=18.4
Q ss_pred hhhHhHHHHHHHHHHHHHhcccc
Q 037438 49 LGSVLGATLIMCGLYAVLWGKGN 71 (118)
Q Consensus 49 ~~~iiG~~LIl~GV~l~~~~~~k 71 (118)
..|++|-++++.|+.++.....|
T Consensus 161 slQImGPlIVl~GLCFFVVAHvK 183 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHVK 183 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeeee
Confidence 46899999999999987765433
No 115
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=45.27 E-value=35 Score=23.85 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhc-ccchhhhhcc
Q 037438 57 LIMCGLYAVLWG-KGNEMKKQSQ 78 (118)
Q Consensus 57 LIl~GV~l~~~~-~~k~~~~~~~ 78 (118)
+++...|+..++ .+|+.++.++
T Consensus 17 l~~~ifyFli~RPQrKr~K~~~~ 39 (97)
T COG1862 17 LIFAIFYFLIIRPQRKRMKEHQE 39 (97)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH
Confidence 333344443444 3444444443
No 116
>COG1971 Predicted membrane protein [Function unknown]
Probab=42.52 E-value=53 Score=25.66 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=34.1
Q ss_pred cchhhhhhhHHHHHHHHHHHHhCccchhhhHhHH-HHHHHHHHHHHhc
Q 037438 22 LFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGA-TLIMCGLYAVLWG 68 (118)
Q Consensus 22 ~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~-~LIl~GV~l~~~~ 68 (118)
-..+.+..+.|+++...|.++=+=.-.+.+|+|. ++++.|+++..-+
T Consensus 41 ~~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~ 88 (190)
T COG1971 41 LIFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEG 88 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888999999888876555667786665 6677888876543
No 117
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=42.45 E-value=7.9 Score=31.98 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhH----hHHHHHHHHHHHH
Q 037438 7 LMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSV----LGATLIMCGLYAV 65 (118)
Q Consensus 7 ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~i----iG~~LIl~GV~l~ 65 (118)
++-..+..+.++.|-...-.+.-+.-+++++-|.++|+|+-|..++ +|.++|+.|..+.
T Consensus 221 ~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~l 283 (288)
T COG4975 221 IGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILL 283 (288)
T ss_pred hhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhh
Confidence 3445566777888888888888888999999999999999998764 5666776665543
No 118
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=42.23 E-value=1.1e+02 Score=24.71 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=30.7
Q ss_pred chhhhhhhHHHHHHHHHHHHhCc---------cchhhhHhHHHHHHHHHHHHHhcc
Q 037438 23 FVSVFTPLSVVAVAVAASLILDE---------KLHLGSVLGATLIMCGLYAVLWGK 69 (118)
Q Consensus 23 ~aS~~~~L~PV~a~llg~l~LgE---------~lt~~~iiG~~LIl~GV~l~~~~~ 69 (118)
..++|..+-.++=.++-++=-++ .++..|++...+++.|+++..+.+
T Consensus 213 ~~~~yli~Y~~~Rf~iEf~R~~~~~~~~~~~~~lt~~Q~~sl~~i~~g~~~~~~~~ 268 (278)
T TIGR00544 213 IFGVYLIGYGIFRFIIEGLREPDLMLTEFSFLNISMGQILSLLMIAGILIIMLLAY 268 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555442121 278999999999999998776543
No 119
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=41.86 E-value=42 Score=17.97 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=6.8
Q ss_pred hhhhHhHHHHHHHH
Q 037438 48 HLGSVLGATLIMCG 61 (118)
Q Consensus 48 t~~~iiG~~LIl~G 61 (118)
.+..++|.+++..+
T Consensus 11 ~~~~~~G~~l~~~~ 24 (34)
T TIGR01167 11 SLLLLLGLLLLGLG 24 (34)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555566444443
No 120
>PRK09577 multidrug efflux protein; Reviewed
Probab=40.29 E-value=68 Score=30.39 Aligned_cols=34 Identities=21% Similarity=-0.006 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438 32 VVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 32 PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~ 66 (118)
-+++++++.++.|.+++...++|.+ +++|+..-+
T Consensus 902 ~l~G~~~~l~l~g~~l~~~s~~G~i-~L~GivVnn 935 (1032)
T PRK09577 902 GVIGAVLGVTLRGMPNDIYFKVGLI-ATIGLSAKN 935 (1032)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHH-HHHHHHHcC
Confidence 3456888999999999999999877 788887633
No 121
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=40.12 E-value=27 Score=27.98 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=31.1
Q ss_pred chhhhhhhHHHHHHHHHHHHhCc-----cchhhhHhHHHHHHHHHHHHHhcc
Q 037438 23 FVSVFTPLSVVAVAVAASLILDE-----KLHLGSVLGATLIMCGLYAVLWGK 69 (118)
Q Consensus 23 ~aS~~~~L~PV~a~llg~l~LgE-----~lt~~~iiG~~LIl~GV~l~~~~~ 69 (118)
..++|..+-.+.=.++-++=-++ -+|..|+++..+++.|+.+..+++
T Consensus 206 ~f~~yl~~Y~~~Rf~iEf~R~~~~~~~~~ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 206 VFALYLIWYSIGRFFIEGLRTDSLMLFGWLRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hHHHHHHHHHHHHHhhhhhccCchhhhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666665441111 378899999999999998765443
No 122
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=39.00 E-value=82 Score=25.50 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=29.9
Q ss_pred chhhhhhhHHHHHHHHHHHHhC---ccchhhhHhHHHHHHHHHHHHH
Q 037438 23 FVSVFTPLSVVAVAVAASLILD---EKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 23 ~aS~~~~L~PV~a~llg~l~Lg---E~lt~~~iiG~~LIl~GV~l~~ 66 (118)
+...+.-+..+-+.++|.++-+ +.+.....+|..+|+.|+++..
T Consensus 85 ~l~~~iii~tiP~~i~Gl~~~~~i~~~l~~~~~v~~~Lii~gilL~~ 131 (268)
T PRK00281 85 RLLLLVIVATIPAGVLGLLFKDFIKEHLFSPIVVAIALIVGGILLLW 131 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3445666777778888876532 2232346899999999999854
No 123
>PRK09579 multidrug efflux protein; Reviewed
Probab=38.83 E-value=75 Score=30.12 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438 33 VAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 33 V~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~ 66 (118)
+++++++.++.|.+++...++| +++++|+..-+
T Consensus 882 ~~G~~~~L~i~~~~l~~~s~~G-~i~L~GivVnn 914 (1017)
T PRK09579 882 ICGALIPLFLGVSSMNIYTQVG-LVTLIGLISKH 914 (1017)
T ss_pred HHHHHHHHHHhCCCccHHHHHH-HHHHHHHHHcC
Confidence 3567788888899999999987 66778887633
No 124
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=38.55 E-value=70 Score=22.38 Aligned_cols=30 Identities=13% Similarity=0.229 Sum_probs=20.6
Q ss_pred chhhhHhHHHHHHHHHHHHHhcccchhhhh
Q 037438 47 LHLGSVLGATLIMCGLYAVLWGKGNEMKKQ 76 (118)
Q Consensus 47 lt~~~iiG~~LIl~GV~l~~~~~~k~~~~~ 76 (118)
+++..+.|+++.+.=+|++.+.++|+.|+.
T Consensus 35 m~~lvI~~iFil~VilwfvCC~kRkrsRrP 64 (94)
T PF05393_consen 35 MWFLVICGIFILLVILWFVCCKKRKRSRRP 64 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 456777777777777788887766655533
No 125
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=38.23 E-value=28 Score=27.83 Aligned_cols=49 Identities=12% Similarity=0.266 Sum_probs=32.2
Q ss_pred chhhhhhhHHHHHHHHHHHHhCc-----cchhhhHhHHHHHHHHHHHHHhcccc
Q 037438 23 FVSVFTPLSVVAVAVAASLILDE-----KLHLGSVLGATLIMCGLYAVLWGKGN 71 (118)
Q Consensus 23 ~aS~~~~L~PV~a~llg~l~LgE-----~lt~~~iiG~~LIl~GV~l~~~~~~k 71 (118)
..+.|..+-.+.=.++-++=-++ .++..|+++..+++.|+.+..+.+++
T Consensus 208 ~f~~yl~~Y~~~Rf~iE~~R~~~~~~~~~ls~~Q~isl~~~~~gi~~~~~~~~~ 261 (269)
T PRK00052 208 VFGLYLIGYGLGRFFIEFFREPDAQLGGGLTMGQILSIPMILLGIILLIWAYRK 261 (269)
T ss_pred HHHHHHHHHHHHHHhhhhhccCchhhccCcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555556665443232 26889999999999999887655333
No 126
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=37.76 E-value=70 Score=25.06 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=27.8
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHH
Q 037438 21 PLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYA 64 (118)
Q Consensus 21 p~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l 64 (118)
.+...+......++.++....++|-+++...+.|.++ +.|+..
T Consensus 123 ~~l~v~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~-~iGi~V 165 (246)
T TIGR00966 123 FALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLT-IIGYSI 165 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHH-HHHHhc
Confidence 3344444444555666667777899999888887554 456654
No 127
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=37.29 E-value=34 Score=21.36 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=14.9
Q ss_pred hhHhHHHHHHHHHHHHHhcccch
Q 037438 50 GSVLGATLIMCGLYAVLWGKGNE 72 (118)
Q Consensus 50 ~~iiG~~LIl~GV~l~~~~~~k~ 72 (118)
+.++++++.+.|+++...++-|.
T Consensus 18 GLi~A~vlfi~Gi~iils~kckC 40 (50)
T PF02038_consen 18 GLIFAGVLFILGILIILSGKCKC 40 (50)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHH
T ss_pred chHHHHHHHHHHHHHHHcCcccc
Confidence 34566777788887766654443
No 128
>PRK10655 potE putrescine transporter; Provisional
Probab=36.42 E-value=55 Score=27.01 Aligned_cols=45 Identities=9% Similarity=-0.118 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchhh
Q 037438 30 LSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMK 74 (118)
Q Consensus 30 L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~~ 74 (118)
+.|+++.++....+--........|..+++.|+.+.-+..+|+.+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (438)
T PRK10655 389 FIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLYGLISPRFEL 433 (438)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 556666655544332222233466788888887776544444433
No 129
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=36.36 E-value=26 Score=20.91 Aligned_cols=17 Identities=24% Similarity=0.712 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhccc
Q 037438 54 GATLIMCGLYAVLWGKG 70 (118)
Q Consensus 54 G~~LIl~GV~l~~~~~~ 70 (118)
|.++++.|+++..|.++
T Consensus 22 ~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHHHHHhheEEec
Confidence 44556666666655443
No 130
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=35.98 E-value=75 Score=19.67 Aligned_cols=19 Identities=21% Similarity=0.051 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhcccchhh
Q 037438 56 TLIMCGLYAVLWGKGNEMK 74 (118)
Q Consensus 56 ~LIl~GV~l~~~~~~k~~~ 74 (118)
++++.|+.+++..|++..|
T Consensus 12 v~~lLg~~I~~~~K~ygYk 30 (50)
T PF12606_consen 12 VMGLLGLSICTTLKAYGYK 30 (50)
T ss_pred HHHHHHHHHHHHhhccccc
Confidence 4556666677766665555
No 131
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=34.17 E-value=83 Score=25.43 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=31.7
Q ss_pred cCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHH
Q 037438 19 RGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYA 64 (118)
Q Consensus 19 ~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l 64 (118)
.-....++......++.++..+.++|-+++...++|.+. +.|+.+
T Consensus 150 ~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~~siaall~-liG~sV 194 (289)
T PRK13022 150 WRFALGAIIALLHDVIITLGIFSLFQIEFDLTVIAALLT-IIGYSL 194 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHH-HHHHhe
Confidence 344555666666667777777888899999888876554 467665
No 132
>PRK10720 uracil transporter; Provisional
Probab=33.62 E-value=79 Score=26.92 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=26.0
Q ss_pred eeehHHHHHHHHHHHh-hcCccchhhhhhhHHHHH
Q 037438 2 IVGSGLMVTTTSWCVH-VRGPLFVSVFTPLSVVAV 35 (118)
Q Consensus 2 i~~S~ia~~l~~~~i~-~~gp~~aS~~~~L~PV~a 35 (118)
+++++++..+|.+..+ +++...-+.|.++.|..+
T Consensus 46 l~~sGi~TliQ~~~~g~rlP~~~G~sfa~i~~~~~ 80 (428)
T PRK10720 46 LLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLL 80 (428)
T ss_pred HHHHHHHHHHHHHhccCccceEEeCcHHHHHHHHH
Confidence 4689999999998886 777777777777666654
No 133
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=33.56 E-value=75 Score=22.52 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=10.6
Q ss_pred CeeehHHHHHHHHHHHhhcCc
Q 037438 1 GIVGSGLMVTTTSWCVHVRGP 21 (118)
Q Consensus 1 Gi~~S~ia~~l~~~~i~~~gp 21 (118)
|+++|+++...-+..+...|.
T Consensus 69 GLlGTv~Gmi~~f~~l~~~~~ 89 (139)
T PF01618_consen 69 GLLGTVIGMIEAFQALAETGS 89 (139)
T ss_pred HHHHHHHHHHHHHHHHhcccC
Confidence 445555555555555544333
No 134
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=33.37 E-value=1.8e+02 Score=25.48 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=29.2
Q ss_pred HHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438 14 WCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 14 ~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~ 66 (118)
|...+.-+.+..++.-..|+-+.+.|++.-.-.+....+++++.++.+..+..
T Consensus 339 ~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 339 WVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555666677888888888765433344444444444444444433
No 135
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=33.34 E-value=64 Score=25.35 Aligned_cols=11 Identities=9% Similarity=0.178 Sum_probs=4.5
Q ss_pred HHHHHHHhCcc
Q 037438 36 AVAASLILDEK 46 (118)
Q Consensus 36 ~llg~l~LgE~ 46 (118)
++..+.+.++.
T Consensus 21 ~~~~~~~~~~~ 31 (356)
T PRK10755 21 LISVFWLWHES 31 (356)
T ss_pred HHHHHHhcccc
Confidence 33333344544
No 136
>PF15102 TMEM154: TMEM154 protein family
Probab=31.38 E-value=37 Score=25.57 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhcccchhh
Q 037438 54 GATLIMCGLYAVLWGKGNEMK 74 (118)
Q Consensus 54 G~~LIl~GV~l~~~~~~k~~~ 74 (118)
+.+|++..|+++.+.|||+.|
T Consensus 68 LvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHheeEEeecccC
Confidence 345555566666654444433
No 137
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=31.35 E-value=1.1e+02 Score=21.92 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcc
Q 037438 33 VAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGK 69 (118)
Q Consensus 33 V~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~ 69 (118)
+.+.+..+++=+-+++.+.++|+++-++|+.+..++.
T Consensus 70 ~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 70 AASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 3445556666677777777888777777766655543
No 138
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=31.29 E-value=1.6e+02 Score=20.88 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=19.9
Q ss_pred HHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438 36 AVAASLILDEKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 36 ~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~ 66 (118)
.++|.+.+++ -....++|..+++.|++...
T Consensus 75 if~G~l~~~~-~~~~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 75 IFLGTLCLGQ-SILSIIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Confidence 4566666666 44556667788888877655
No 139
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=30.40 E-value=1.5e+02 Score=18.92 Aligned_cols=41 Identities=7% Similarity=-0.139 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHhCcc---------chhhhHhHHHHHHHHHHHHHhc
Q 037438 28 TPLSVVAVAVAASLILDEK---------LHLGSVLGATLIMCGLYAVLWG 68 (118)
Q Consensus 28 ~~L~PV~a~llg~l~LgE~---------lt~~~iiG~~LIl~GV~l~~~~ 68 (118)
..+.|+++.+.+..+++.. +.+++++-..+.-..++++.+-
T Consensus 3 ll~iP~l~~l~~~p~~nr~~P~v~G~Pff~~w~~~wv~lts~~~~~~y~l 52 (66)
T PF11755_consen 3 LLLIPFLALLWGPPFYNRVEPTVFGMPFFYWWQLAWVVLTSVCMAIVYRL 52 (66)
T ss_pred hHHHHHHHHHHhHHHhccCCccccCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666664444332 2344554444444444444433
No 140
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=30.21 E-value=1.4e+02 Score=24.03 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=32.7
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhC--ccch--hhhHhHHHHHHHHHHHHHh
Q 037438 21 PLFVSVFTPLSVVAVAVAASLILD--EKLH--LGSVLGATLIMCGLYAVLW 67 (118)
Q Consensus 21 p~~aS~~~~L~PV~a~llg~l~Lg--E~lt--~~~iiG~~LIl~GV~l~~~ 67 (118)
..+...+.-+..+-+.++|..+-+ |... ....+|..+++.|+++..-
T Consensus 78 ~~~~~~~iiiatip~~v~G~~~~~~i~~~~~~~~~~v~~~Li~~g~lL~~~ 128 (259)
T PF02673_consen 78 DRRLLLLIIIATIPTGVVGLLFKDFIEALFFSSPLVVAIALIITGLLLWLA 128 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Confidence 345666677778888888877643 3322 4567899999999988553
No 141
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=30.18 E-value=19 Score=26.57 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=16.6
Q ss_pred CccchhhhHhHHHHHHHHHHH
Q 037438 44 DEKLHLGSVLGATLIMCGLYA 64 (118)
Q Consensus 44 gE~lt~~~iiG~~LIl~GV~l 64 (118)
+.......++|.++.-.|+++
T Consensus 74 n~~~si~~~~G~vlLs~GLml 94 (129)
T PF15099_consen 74 NSHGSIISIFGPVLLSLGLML 94 (129)
T ss_pred cCCcchhhhehHHHHHHHHHH
Confidence 666777788888888888876
No 142
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=30.14 E-value=1.8e+02 Score=24.37 Aligned_cols=42 Identities=17% Similarity=0.052 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438 29 PLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG 70 (118)
Q Consensus 29 ~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~ 70 (118)
.+.++.+.++..+.+--.-.....+|.++++.|+.+..+.++
T Consensus 391 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~ 432 (468)
T TIGR03810 391 LLIGLVALLYAVWLIYAAGLKYLLLSAILYAPGIYFYARARK 432 (468)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333332211223567888889999888766433
No 143
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=29.69 E-value=53 Score=25.11 Aligned_cols=32 Identities=16% Similarity=0.019 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHhCccchhhhHhHHHHHHHH
Q 037438 30 LSVVAVAVAASLILDEKLHLGSVLGATLIMCG 61 (118)
Q Consensus 30 L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~G 61 (118)
+...++++.|....+.....-.+.|.+-.+.|
T Consensus 13 lv~~~~lv~G~a~a~~~~~~vl~~gla~~iAg 44 (213)
T PF01988_consen 13 LVTTFGLVAGVAGAGVSSSVVLLAGLAGLIAG 44 (213)
T ss_pred HHHHHHHHHHHHHcccChHHHHHHHHHHHHHH
Confidence 45566777777776665555555554444443
No 144
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=29.32 E-value=1.1e+02 Score=25.08 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=26.8
Q ss_pred hhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHH
Q 037438 24 VSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYA 64 (118)
Q Consensus 24 aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l 64 (118)
+++.....-++.++..+.++|.+++...++|.+. +.|+.+
T Consensus 154 ~al~al~~dv~~~l~~l~l~g~~l~~~~iaglLt-liG~sv 193 (297)
T PRK13021 154 GALFALVHDVIFVLAFFALTQMEFNLTVLAAVLA-ILGYSL 193 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHH-HHHHee
Confidence 3444444456667777778899999888887554 556554
No 145
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=28.71 E-value=1.3e+02 Score=25.39 Aligned_cols=60 Identities=22% Similarity=0.022 Sum_probs=40.8
Q ss_pred HHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccc
Q 037438 9 VTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGN 71 (118)
Q Consensus 9 ~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k 71 (118)
.++..+..++....... -..+..+..++++.-++-|.+....++|+.+. |+.+.....++
T Consensus 204 ~~l~~~~~r~~~~~~~~-e~~~~~~l~i~l~~a~l~e~~gls~ilGAFla--Gl~ls~~~~~~ 263 (397)
T COG0475 204 RYLLPPLFRRVAKTESS-ELFILFVLLLVLGAAYLAELLGLSMILGAFLA--GLLLSESEYRK 263 (397)
T ss_pred HHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH--HHHhcccccch
Confidence 44555555555554333 33455566677777888999999999999875 98887765443
No 146
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=28.27 E-value=72 Score=23.30 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCccchh-------hhHhHHHHHHHHHHH
Q 037438 34 AVAVAASLILDEKLHL-------GSVLGATLIMCGLYA 64 (118)
Q Consensus 34 ~a~llg~l~LgE~lt~-------~~iiG~~LIl~GV~l 64 (118)
++.++++.++||-+.. ++++|+++.+..+.+
T Consensus 11 ~~ii~~~~~~G~~i~~~l~lplPGsIiGmvLLfllL~~ 48 (128)
T COG1380 11 LAIILGFLFLGEWIASLLHLPLPGSIIGMVLLFLLLAL 48 (128)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHh
Confidence 5677888888887764 789999888877654
No 147
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.85 E-value=28 Score=30.61 Aligned_cols=53 Identities=13% Similarity=0.049 Sum_probs=38.9
Q ss_pred ccchhhhHhHHHHHHHHHHHHHhcccchhhhh--cccCCCCCCCcccceEEEeec
Q 037438 45 EKLHLGSVLGATLIMCGLYAVLWGKGNEMKKQ--SQLVPAANTSKESESIEISIT 97 (118)
Q Consensus 45 E~lt~~~iiG~~LIl~GV~l~~~~~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~ 97 (118)
..-.+..++-..||+.++++..+.+++.+++. +++.+.....|+-||++--+.
T Consensus 16 ~~d~~~~~iE~lLi~~~i~~~~rk~~~~~~~~lt~~eideLiedw~PEPLV~~~~ 70 (467)
T KOG1358|consen 16 WRDILHTIIETLLIVLVIILLLRKSYKIPVRPLTEQEIDELIEDWEPEPLVPPVP 70 (467)
T ss_pred cCChHHHHHHHHHHHHhhheeeeccCCCcccCCCHHHHHHHHhcCCCCCCCCCCc
Confidence 34458889999999999998887666555544 666677777888888776554
No 148
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=27.78 E-value=11 Score=31.77 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=25.5
Q ss_pred HHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccch
Q 037438 12 TSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNE 72 (118)
Q Consensus 12 ~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~ 72 (118)
|...+....|-.=++-..+.-++++-+|.- +.++|+.|+|++.++++++
T Consensus 301 Wt~~~G~G~PP~d~~S~lvi~i~~vgLG~P------------~l~li~Ggl~v~~~r~r~~ 349 (350)
T PF15065_consen 301 WTFLIGYGSPPVDSFSPLVIMIMAVGLGVP------------LLLLILGGLYVCLRRRRKR 349 (350)
T ss_pred EEEecccCCCCccchhHHHHHHHHHHhhHH------------HHHHHHhhheEEEeccccC
Confidence 333344444444444444444444444433 3467777777776655543
No 149
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=26.20 E-value=1.4e+02 Score=28.01 Aligned_cols=54 Identities=9% Similarity=0.029 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhcCccchhhhhhhHH--HHHHHHHHHHhCccchhhhHhHHHHHHHHHHH
Q 037438 8 MVTTTSWCVHVRGPLFVSVFTPLSV--VAVAVAASLILDEKLHLGSVLGATLIMCGLYA 64 (118)
Q Consensus 8 a~~l~~~~i~~~gp~~aS~~~~L~P--V~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l 64 (118)
-|.+..+-.+ +-...-+.+...| ++++++|.++.|.+++...++|.+ .++|+..
T Consensus 875 iyliL~~~F~--S~~~PliIm~~IPla~~G~~~~l~i~g~~l~~~s~iG~i-~L~GIvV 930 (1021)
T PF00873_consen 875 IYLILAAQFE--SFRQPLIIMLTIPLALIGVLLGLFITGQPLSFMSLIGII-ALIGIVV 930 (1021)
T ss_dssp HHHHHHHHTT--SSSTHHHHHTTHHHHHHHHHHHHHHTTBEBSHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHhc--ceeeeEEEEeccchhhHHHHHHHhhccccccccceehHH-HHHHHHH
Confidence 3344333333 3333334444444 467899999999999999999864 4556654
No 150
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=25.74 E-value=45 Score=22.37 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=12.1
Q ss_pred HHHHHHHHhc-ccchhhhhcccCCCCCC
Q 037438 59 MCGLYAVLWG-KGNEMKKQSQLVPAANT 85 (118)
Q Consensus 59 l~GV~l~~~~-~~k~~~~~~~~~~~~~~ 85 (118)
+...|+..++ .+|++++.+++.++...
T Consensus 13 ~~i~yf~~~rpqkK~~k~~~~m~~~L~~ 40 (84)
T TIGR00739 13 FLIFYFLIIRPQRKRRKAHKKLIESLKK 40 (84)
T ss_pred HHHHHHheechHHHHHHHHHHHHHhCCC
Confidence 3344444443 34444454454444443
No 151
>PRK02935 hypothetical protein; Provisional
Probab=25.66 E-value=1.6e+02 Score=21.26 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHhCcc---chhhhHhHHHHHHHHHHHHHhcccc
Q 037438 28 TPLSVVAVAVAASLILDEK---LHLGSVLGATLIMCGLYAVLWGKGN 71 (118)
Q Consensus 28 ~~L~PV~a~llg~l~LgE~---lt~~~iiG~~LIl~GV~l~~~~~~k 71 (118)
.-+.-+..+.+|.+| .+. .+...++|.+.++.+..+..|..-.
T Consensus 19 lvfiG~~vMy~Giff-~~~~~~m~ifm~~G~l~~l~S~vvYFwiGml 64 (110)
T PRK02935 19 LVFIGFIVMYLGIFF-RESIIIMTIFMLLGFLAVIASTVVYFWIGML 64 (110)
T ss_pred HHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444445555433 332 3556678888888777777775443
No 152
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=24.82 E-value=74 Score=21.68 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=18.3
Q ss_pred cchhhhHhHHHHHHHHHHHHHhc
Q 037438 46 KLHLGSVLGATLIMCGLYAVLWG 68 (118)
Q Consensus 46 ~lt~~~iiG~~LIl~GV~l~~~~ 68 (118)
.+++..++|.+++++|+.+...+
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr 26 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLR 26 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999988887654
No 153
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=24.56 E-value=3.1e+02 Score=20.57 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchhh
Q 037438 8 MVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMK 74 (118)
Q Consensus 8 a~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~~ 74 (118)
...+..+.+++.|..+.++=... -+..+++.----+++.++.|..++++=++.+.......+|
T Consensus 61 T~G~~~~lm~~kgi~rm~lG~~v----m~~~~~llw~ggv~~~~IAg~~lv~filmvVLiPEpg~QR 123 (144)
T PF01350_consen 61 TLGVFWFLMRRKGIGRMSLGMLV----MAVAGYLLWMGGVPPGQIAGVLLVFFILMVVLIPEPGKQR 123 (144)
T ss_pred HHHHHHhhhcCCCcchhhHHHHH----HHHHHHHHHhcCCcHHHhHHHHHHHHHHHHhcccCCCCcC
Confidence 34455677888899888765432 2333333334457888888888888777776666554444
No 154
>PF14897 EpsG: EpsG family
Probab=24.28 E-value=2.4e+02 Score=21.60 Aligned_cols=59 Identities=5% Similarity=-0.034 Sum_probs=35.9
Q ss_pred ehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438 4 GSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 4 ~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~ 66 (118)
.+.+.+.+..+.+++..... ....+++-......+..+.-..+|.++.++++.|+....
T Consensus 72 ~~~i~~~~~~~~i~~~~~~~----~~~~~~~l~~~~~~~~~~~~~iRq~~A~~~~~~a~~~~~ 130 (330)
T PF14897_consen 72 ISFISLFLFFFFIKKYSKNY----PIFLSLFLFFSFFFFFYSFNQIRQSLAISFFLLALSYLY 130 (330)
T ss_pred HHHHHHHHHHHhHHHcccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777665 112222222334455566667888888888888866554
No 155
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=23.32 E-value=1.1e+02 Score=25.40 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=21.7
Q ss_pred hhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchhh
Q 037438 26 VFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMK 74 (118)
Q Consensus 26 ~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~~ 74 (118)
...+-.|+.+.++++++ .+||++=+||+.+-+||.+.
T Consensus 251 ~~~~~t~I~aSiiaIli------------IVLIMvIIYLILRYRRKKKm 287 (299)
T PF02009_consen 251 YASLTTAIIASIIAILI------------IVLIMVIIYLILRYRRKKKM 287 (299)
T ss_pred hhhhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhh
Confidence 33445667777776665 46666667777654444433
No 156
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=23.04 E-value=1.6e+02 Score=25.02 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=27.4
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHH
Q 037438 21 PLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLY 63 (118)
Q Consensus 21 p~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~ 63 (118)
+..++.......++.++.-+.++|-+++...+.|.++++ |+.
T Consensus 272 ~gl~a~ial~~~v~~~l~~~~l~g~~l~l~siaglil~i-G~~ 313 (397)
T TIGR01129 272 FGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTI-GMA 313 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHh-hee
Confidence 344445555555666666666789999998888766544 443
No 157
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=22.91 E-value=2.4e+02 Score=23.13 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=33.5
Q ss_pred hhhhhhhHHHHHHHHHHHHhC---ccchhhhHhHHHHHHHHHHHHHhc
Q 037438 24 VSVFTPLSVVAVAVAASLILD---EKLHLGSVLGATLIMCGLYAVLWG 68 (118)
Q Consensus 24 aS~~~~L~PV~a~llg~l~Lg---E~lt~~~iiG~~LIl~GV~l~~~~ 68 (118)
...+..+..+-++++|.++-+ +.+.....++.++|+.|+++..-.
T Consensus 86 l~l~ilvatiPa~v~Gl~~~d~i~~~l~~~~~va~~lIv~gi~li~~e 133 (270)
T COG1968 86 LWLKILVATIPAVVLGLLFKDFIKSHLFNPRVVAIALIVGGILLILAE 133 (270)
T ss_pred HHHHHHHHHHhHHHhhHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 466677777778888877654 446667888899999999886643
No 158
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=22.91 E-value=2.4e+02 Score=23.67 Aligned_cols=43 Identities=16% Similarity=-0.020 Sum_probs=24.5
Q ss_pred hhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcc
Q 037438 27 FTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGK 69 (118)
Q Consensus 27 ~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~ 69 (118)
+.+..|+++.++..+++--.-......|.++++.|+.+..+.+
T Consensus 394 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~ 436 (473)
T TIGR00905 394 KALIVGVIACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRAR 436 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665554443322223356678888889976655433
No 159
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.81 E-value=2.2e+02 Score=22.45 Aligned_cols=47 Identities=26% Similarity=0.396 Sum_probs=30.2
Q ss_pred chhhhhhhHHHHHHHHHHH---HhC---------ccchhhhHhHHHHHHHHHHHHHhccc
Q 037438 23 FVSVFTPLSVVAVAVAASL---ILD---------EKLHLGSVLGATLIMCGLYAVLWGKG 70 (118)
Q Consensus 23 ~aS~~~~L~PV~a~llg~l---~Lg---------E~lt~~~iiG~~LIl~GV~l~~~~~~ 70 (118)
+.+.+.++.-+.++++|.. +.. |.+ ....+|.++++.|+..+....+
T Consensus 138 ~~Gl~~fvLaiaT~~lGl~ek~~f~~~~~~~~~~e~~-l~N~~gl~~~~fg~~V~~~~~~ 196 (214)
T cd08764 138 FFGLFIFVLAVATALLGITEKAFFSLNKYSNLPAEGV-LGNFIGIVLVIFGGLVVYLVTE 196 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccCChhHH-HHHHHHHHHHHHHHHHHHhccC
Confidence 3566677777777777752 121 111 3467889999999888665443
No 160
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=22.75 E-value=2.5e+02 Score=18.88 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=11.8
Q ss_pred CccchhhhHhHHHHHHHHHHHHH
Q 037438 44 DEKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 44 gE~lt~~~iiG~~LIl~GV~l~~ 66 (118)
.........++.++++++++...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ 58 (176)
T PF13567_consen 36 RRRSRIWLLLLLVLLLGGLGFHA 58 (176)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544
No 161
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=22.71 E-value=66 Score=26.80 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=18.4
Q ss_pred chhhhHhHHHHHHHHHHHHHhcccch
Q 037438 47 LHLGSVLGATLIMCGLYAVLWGKGNE 72 (118)
Q Consensus 47 lt~~~iiG~~LIl~GV~l~~~~~~k~ 72 (118)
+..+.++-+++|+.|+++--|++.|.
T Consensus 5 l~~~livig~i~i~~il~~~~~r~r~ 30 (293)
T PRK00269 5 LREWLIVIGIIVIAGILFDGWRRMRG 30 (293)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666788888999888876544
No 162
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=22.67 E-value=2e+02 Score=22.98 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=30.0
Q ss_pred hhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHH----HHHHHHhcccch
Q 037438 24 VSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMC----GLYAVLWGKGNE 72 (118)
Q Consensus 24 aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~----GV~l~~~~~~k~ 72 (118)
+++..|+..+++.++|.++ |..+......|.-+.+. ++++.+|++++.
T Consensus 139 ~~l~~y~~Wv~~t~iGa~~-G~~l~~~~~~GldFal~a~Fi~L~~~~~k~~~~ 190 (238)
T COG1296 139 VALLAYLYWVVGTLIGALL-GSLLPDPETIGLDFALPALFIVLVIPQFKRRKT 190 (238)
T ss_pred hHHHHHHHHHHHHHHHHHh-hhccCCHhhhhHHHHHHHHHHHHHHHHHhcchh
Confidence 3567788899999999775 44555555555544444 444555655443
No 163
>PLN02351 cytochromes b561 family protein
Probab=22.45 E-value=2.4e+02 Score=22.79 Aligned_cols=43 Identities=30% Similarity=0.290 Sum_probs=28.3
Q ss_pred chhhhhhhHHHHHHHHHHHHhCccch----------------hhhHhHHHHHHHHHHHHHhc
Q 037438 23 FVSVFTPLSVVAVAVAASLILDEKLH----------------LGSVLGATLIMCGLYAVLWG 68 (118)
Q Consensus 23 ~aS~~~~L~PV~a~llg~l~LgE~lt----------------~~~iiG~~LIl~GV~l~~~~ 68 (118)
+.+.+.++.-+.++++|.. |+++ ....+|.++++.|...+...
T Consensus 161 ~~Gl~if~LaiaTa~lGl~---EKl~F~~~~~~y~~~~~Ea~lvN~~Glliv~fG~~Vv~~~ 219 (242)
T PLN02351 161 FLGLYTYGLAVATAETGLL---EKLTFLQTKRNVSKHGSESMVVNGLGLGLALLSGIVILAA 219 (242)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHhccCCccccCCchhhhHHHHHHHHHHHHHHHHHhh
Confidence 3466677777777777753 3333 34578899999997765543
No 164
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=22.44 E-value=2.4e+02 Score=20.74 Aligned_cols=10 Identities=40% Similarity=0.511 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 037438 54 GATLIMCGLY 63 (118)
Q Consensus 54 G~~LIl~GV~ 63 (118)
|..++..|++
T Consensus 143 ~i~~~glGll 152 (181)
T PF08006_consen 143 GIGLFGLGLL 152 (181)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 165
>PRK11562 nitrite transporter NirC; Provisional
Probab=22.44 E-value=86 Score=25.41 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=17.9
Q ss_pred chhhhHhHHHHHHHHHHHHHhcccch
Q 037438 47 LHLGSVLGATLIMCGLYAVLWGKGNE 72 (118)
Q Consensus 47 lt~~~iiG~~LIl~GV~l~~~~~~k~ 72 (118)
.+++-++|+.+.+..+|....+++++
T Consensus 229 vtLGNivGG~v~vg~~y~~~~~~~~~ 254 (268)
T PRK11562 229 VTLGNTLSGAVFMGLGYWYATPKANR 254 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 45677889888887777766554443
No 166
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=22.43 E-value=86 Score=20.55 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=17.4
Q ss_pred hhhHhHHHHHHHHHHHHHhccc
Q 037438 49 LGSVLGATLIMCGLYAVLWGKG 70 (118)
Q Consensus 49 ~~~iiG~~LIl~GV~l~~~~~~ 70 (118)
+..++|.++++.|+.+..|...
T Consensus 1 ~~~~~G~~l~~~g~~l~~~~~~ 22 (106)
T PF04191_consen 1 WRFVLGLLLILAGIALAIWAFK 22 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999877544
No 167
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=22.33 E-value=3e+02 Score=19.70 Aligned_cols=57 Identities=16% Similarity=0.051 Sum_probs=39.6
Q ss_pred HHHHHHhhcC-ccchhhhhhhHHHHHHHHHHHHhCc-------cchhhhHhHHHHHHHHHHHHHh
Q 037438 11 TTSWCVHVRG-PLFVSVFTPLSVVAVAVAASLILDE-------KLHLGSVLGATLIMCGLYAVLW 67 (118)
Q Consensus 11 l~~~~i~~~g-p~~aS~~~~L~PV~a~llg~l~LgE-------~lt~~~iiG~~LIl~GV~l~~~ 67 (118)
+....=++.| |-.++.+.+..=.+..++-+++.++ +..++.+.|+++=..-++...+
T Consensus 19 ~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~~ 83 (138)
T PF04657_consen 19 FNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNII 83 (138)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHHH
Confidence 3345556677 8888888888888888888888777 4567777777665555444443
No 168
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=22.23 E-value=1.5e+02 Score=25.63 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=14.1
Q ss_pred eecCChHHHHHhhhccCC
Q 037438 95 SITSPNEEIKELNDSRKG 112 (118)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~ 112 (118)
|+.++-.|++++-++|+=
T Consensus 331 si~~nT~eLR~ms~~R~v 348 (386)
T PF05510_consen 331 SIRDNTKELRQMSDQRQV 348 (386)
T ss_pred ccccCHHHHHhhhccCCC
Confidence 455888999999988753
No 169
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=22.15 E-value=75 Score=24.81 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHhCccchhhhHhHHHHHHHH
Q 037438 29 PLSVVAVAVAASLILDEKLHLGSVLGATLIMCG 61 (118)
Q Consensus 29 ~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~G 61 (118)
-+...++++.|..--+.....--+.|.+-.+.|
T Consensus 18 Glvs~~alvaG~aga~~~~~~Ill~Gla~l~Ag 50 (218)
T cd02432 18 GIVSVAGLVVGVAAATASSFTILIAGLAGLVAG 50 (218)
T ss_pred hHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 356667777777655555555445555444444
No 170
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=21.97 E-value=2.9e+02 Score=22.76 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHhCccc--hhhhHh--HHHHHHHHHHHHHhccc
Q 037438 28 TPLSVVAVAVAASLILDEKL--HLGSVL--GATLIMCGLYAVLWGKG 70 (118)
Q Consensus 28 ~~L~PV~a~llg~l~LgE~l--t~~~ii--G~~LIl~GV~l~~~~~~ 70 (118)
.++.|+++.++..+++--.+ .+..++ -...++.+++...++++
T Consensus 386 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 432 (442)
T TIGR00908 386 GILTPGVALVLACVALVTGFYVDPRVVVGAVAIFVVLIGYYFLYSRH 432 (442)
T ss_pred cchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhhhc
Confidence 36778888776655543221 122222 34455555555555443
No 171
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=21.73 E-value=1.7e+02 Score=26.77 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=23.7
Q ss_pred hhhhhhHHHHHHHHHHHHh-CccchhhhHhHHHHHHHHHHH
Q 037438 25 SVFTPLSVVAVAVAASLIL-DEKLHLGSVLGATLIMCGLYA 64 (118)
Q Consensus 25 S~~~~L~PV~a~llg~l~L-gE~lt~~~iiG~~LIl~GV~l 64 (118)
+......-++.++...-++ |-++++..+.|.++.+ |+.+
T Consensus 468 a~iAL~~~l~l~l~vmsll~G~tLtLpgIAGiILtI-GmaV 507 (604)
T PRK12933 468 ANVALIANMVCLFGLLALIPGAVLTLPGIAGLVLTV-GMAV 507 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH-Hhhc
Confidence 3333333344444444445 8999999888877766 7665
No 172
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.65 E-value=1.7e+02 Score=24.61 Aligned_cols=45 Identities=11% Similarity=0.003 Sum_probs=36.8
Q ss_pred CccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHH
Q 037438 20 GPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYA 64 (118)
Q Consensus 20 gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l 64 (118)
+......|.+..|+...++||.+-..-+....+.+..-.+.|+++
T Consensus 98 P~~v~~~~~f~~Pv~lpiLG~~~GliYv~i~~~va~~~tlig~l~ 142 (311)
T COG3366 98 PTGVRHAFTFYAPVALPILGLELGLIYVGIRVLVALLKTLIGVLY 142 (311)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444688999999999999988888888888888888889744
No 173
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=21.50 E-value=1.4e+02 Score=26.16 Aligned_cols=38 Identities=11% Similarity=0.006 Sum_probs=30.5
Q ss_pred eeehHHHHHHHHHHHh----hcCccchhhhhhhHHHHHHHHH
Q 037438 2 IVGSGLMVTTTSWCVH----VRGPLFVSVFTPLSVVAVAVAA 39 (118)
Q Consensus 2 i~~S~ia~~l~~~~i~----~~gp~~aS~~~~L~PV~a~llg 39 (118)
+++++++..+|.++.+ +++...-+.|.+..|+.++.-.
T Consensus 59 l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~~~~~ 100 (451)
T COG2233 59 LLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAIGGT 100 (451)
T ss_pred HHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHHHHhc
Confidence 5789999999999888 6677777888888887776543
No 174
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=21.44 E-value=86 Score=25.96 Aligned_cols=6 Identities=33% Similarity=0.279 Sum_probs=2.5
Q ss_pred ccchhh
Q 037438 69 KGNEMK 74 (118)
Q Consensus 69 ~~k~~~ 74 (118)
.+|++|
T Consensus 428 ~~~~~~ 433 (455)
T TIGR00892 428 LAKEQK 433 (455)
T ss_pred HHHHHH
Confidence 344444
No 175
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].
Probab=21.34 E-value=2.1e+02 Score=18.25 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcc
Q 037438 31 SVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGK 69 (118)
Q Consensus 31 ~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~ 69 (118)
.-++..+..+++.+.+......+|+++-+...++..+.-
T Consensus 9 l~~~~~~~~~~~~~~~~~~s~~~G~~i~~~~~~~~~~~~ 47 (100)
T PF03899_consen 9 LLAVLALVFFLFFGWPVALSFLLGGLISLLNFFLLARRV 47 (100)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666688899999999998888887766543
No 176
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.05 E-value=2.2e+02 Score=19.96 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHh
Q 037438 30 LSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLW 67 (118)
Q Consensus 30 L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~ 67 (118)
+.|++.-++.=..|++.+...-..=..+++.|+.+-.+
T Consensus 53 v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~ 90 (100)
T TIGR02230 53 AIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCL 90 (100)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 34444433333566887764434444566677766443
No 177
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=20.98 E-value=3.2e+02 Score=20.70 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=41.5
Q ss_pred eehHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhccc
Q 037438 3 VGSGLMVTTTSWCVHVRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKG 70 (118)
Q Consensus 3 ~~S~ia~~l~~~~i~~~gp~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~ 70 (118)
+++.++..++.-++++.++...+...++.-++.++ ..-.++-..+..+|-+++...+.++.|.-+
T Consensus 73 ~~s~~~~~vtl~~~a~~~~~~~~~l~~~~~~~~ai---~~~~~~~~~~~~~~Pi~~~~~i~~~~w~~r 137 (186)
T PF12036_consen 73 IGSFLSIWVTLCAMARLDEPLKSVLHYFGALVIAI---FQQKDRWSLWNTIGPILIGLLILLVSWLYR 137 (186)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH---HHhhCcccchhhHHHHHHHHHHHHHHHhee
Confidence 46677777777777777777766665544443333 344566677777777777666666666433
No 178
>PF11449 DUF2899: Protein of unknown function (DUF2899); InterPro: IPR021552 This is a bacterial family of uncharacterised proteins.
Probab=20.95 E-value=2.1e+02 Score=23.88 Aligned_cols=61 Identities=11% Similarity=0.075 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhcC---ccchhhhhhhHHHHHHHHH------------HHHhCccchhhhHhHHHHHHHHHHHHH
Q 037438 6 GLMVTTTSWCVHVRG---PLFVSVFTPLSVVAVAVAA------------SLILDEKLHLGSVLGATLIMCGLYAVL 66 (118)
Q Consensus 6 ~ia~~l~~~~i~~~g---p~~aS~~~~L~PV~a~llg------------~l~LgE~lt~~~iiG~~LIl~GV~l~~ 66 (118)
.+++.+++..+...| +...+....+.|++++++| -+++.-.+.+...++.++.=.|+-+.-
T Consensus 193 ~~~~l~~~~~i~~~G~dl~~~l~~~~~~~pliaalvGlIPnCg~sVliT~LYl~G~ipfsal~Aglis~dG~gLlp 268 (298)
T PF11449_consen 193 FVAFLALELVIEFIGEDLAALLSGNGILQPLIAALVGLIPNCGPSVLITQLYLSGAIPFSALIAGLISNDGDGLLP 268 (298)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHhCchHHHHHHHHhccCCCchHHHHHHHHHHcCCcCHHHHHhhhhhcCcchHHH
Confidence 467888999999999 6666777789999996655 567888888888888888888777654
No 179
>PRK13955 mscL large-conductance mechanosensitive channel; Provisional
Probab=20.88 E-value=1.3e+02 Score=22.03 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=12.4
Q ss_pred CChHHHHHhhhccCCCc
Q 037438 98 SPNEEIKELNDSRKGDQ 114 (118)
Q Consensus 98 ~~~~~~~~~~~~~~~~~ 114 (118)
++-+||+++-..|.++|
T Consensus 113 ~lL~eIrdlL~~~~~~~ 129 (130)
T PRK13955 113 ELLGEIRDLLKQQNSSK 129 (130)
T ss_pred HHHHHHHHHHHhcccCC
Confidence 35678888877777765
No 180
>COG0682 Lgt Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]
Probab=20.80 E-value=88 Score=25.81 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=20.0
Q ss_pred hhHhHHHHHHHHHHHHHhcccchhh
Q 037438 50 GSVLGATLIMCGLYAVLWGKGNEMK 74 (118)
Q Consensus 50 ~~iiG~~LIl~GV~l~~~~~~k~~~ 74 (118)
+|++...+|+.|+.+..+.++|.++
T Consensus 255 gqilSi~mIl~Gi~~~~~~~~k~~~ 279 (287)
T COG0682 255 GQILSIPMILLGLWLIIYLYKKAKK 279 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccC
Confidence 7899999999999998876655433
No 181
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=20.80 E-value=3.2e+02 Score=22.62 Aligned_cols=17 Identities=6% Similarity=-0.187 Sum_probs=11.6
Q ss_pred hhhhHHHHHHHHHHHHh
Q 037438 27 FTPLSVVAVAVAASLIL 43 (118)
Q Consensus 27 ~~~L~PV~a~llg~l~L 43 (118)
+.++.|+++++...+++
T Consensus 386 ~~~~~~~~~~~~~~~~~ 402 (445)
T PRK10644 386 AYLAVTLIAFVYCIWAV 402 (445)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 45677888877776554
No 182
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=20.58 E-value=2e+02 Score=26.65 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=33.6
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHHHH
Q 037438 21 PLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGLYA 64 (118)
Q Consensus 21 p~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l 64 (118)
+..++......+++.++....++|-+++...+.|.+++ .|+.+
T Consensus 290 ~~lia~ial~~~v~~~l~~l~l~g~~l~l~siaglil~-iGi~V 332 (755)
T PRK13024 290 PGLIANIALLLYIFLTLGALSSLGAVLTLPGIAGLVLG-IGMAV 332 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHH-HHHHH
Confidence 67777777778888888888889999999998766655 56654
No 183
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=20.39 E-value=1.1e+02 Score=26.65 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCccchhhhHhHHHHHHHHHHHHHhcccchhhhhcccCCCCCCCcccceEEEeecCChHHHHHhhhccC
Q 037438 32 VVAVAVAASLILDEKLHLGSVLGATLIMCGLYAVLWGKGNEMKKQSQLVPAANTSKESESIEISITSPNEEIKELNDSRK 111 (118)
Q Consensus 32 PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV~l~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (118)
+++.+.+..+++++-+....++ ++++.|-++-.+.++|..+.-+...... ..+++ .+ .+.+++.-...+-++
T Consensus 4 l~~~a~~~~~~~~~~~~~~~i~--~~~~~~~~l~~~~~~~a~~~l~~l~~~~--~~~~~--v~--r~g~~~~i~~~~l~~ 75 (536)
T TIGR01512 4 LMALAALGAVAIGEYLEGALLL--LLFSIGETLEEYASGRARRALKALMELA--PDTAR--VL--RGGSLEEVAVEELKV 75 (536)
T ss_pred HHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEE--EE--ECCEEEEEEHHHCCC
Confidence 3344444445566644333222 3444566666665444433332221111 11111 11 223333344566778
Q ss_pred CCccC
Q 037438 112 GDQVL 116 (118)
Q Consensus 112 ~~~~~ 116 (118)
||.+.
T Consensus 76 GDiv~ 80 (536)
T TIGR01512 76 GDVVV 80 (536)
T ss_pred CCEEE
Confidence 88763
Done!