Query 037438
Match_columns 118
No_of_seqs 140 out of 1071
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 21:06:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037438.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037438hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 37.3 36 0.0026 23.4 5.8 15 10-24 363-377 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 16.0 76 0.0055 20.7 3.9 11 11-21 333-343 (417)
3 d1iwga8 f.35.1.1 (A:513-566,A: 14.2 1.4E+02 0.01 19.8 5.1 27 33-59 95-121 (222)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 13.4 1E+02 0.0076 20.2 4.1 42 21-62 65-106 (199)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 9.6 52 0.0038 19.5 1.2 17 57-73 30-46 (91)
6 d1ppjg_ f.23.13.1 (G:) Ubiquin 9.2 84 0.0061 18.5 2.0 15 4-18 51-65 (75)
7 d1q90l_ f.23.24.1 (L:) PetL su 8.8 1.3E+02 0.0095 14.7 2.4 19 49-67 8-26 (32)
8 d2axtk1 f.23.36.1 (K:10-46) Ph 8.3 1.4E+02 0.011 15.2 2.5 16 27-42 15-30 (37)
9 d2p7tc1 f.14.1.1 (C:86-119) Po 8.2 1.1E+02 0.0081 15.2 1.9 20 25-44 13-32 (34)
10 d2pkha1 d.190.1.2 (A:109-249) 8.0 1E+02 0.0075 18.3 2.2 26 91-116 83-108 (141)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=37.34 E-value=36 Score=23.35 Aligned_cols=15 Identities=0% Similarity=-0.186 Sum_probs=7.0
Q ss_pred HHHHHHHhhcCccch
Q 037438 10 TTTSWCVHVRGPLFV 24 (118)
Q Consensus 10 ~l~~~~i~~~gp~~a 24 (118)
..+....+..++...
T Consensus 363 ~~~~~~~~~~p~~~~ 377 (447)
T d1pw4a_ 363 LIGLHALELAPKKAA 377 (447)
T ss_dssp HHHHHHHHTSCTTHH
T ss_pred HHHHHHHHHcCHHHH
Confidence 334455555554443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=15.97 E-value=76 Score=20.66 Aligned_cols=11 Identities=0% Similarity=-0.212 Sum_probs=5.0
Q ss_pred HHHHHHhhcCc
Q 037438 11 TTSWCVHVRGP 21 (118)
Q Consensus 11 l~~~~i~~~gp 21 (118)
.+.+..+..++
T Consensus 333 ~~~~~~~~~~~ 343 (417)
T d1pv7a_ 333 CFKYITSQFEV 343 (417)
T ss_dssp HHHHHHHHSCG
T ss_pred HHHHHHHHCCH
Confidence 34444454444
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=14.23 E-value=1.4e+02 Score=19.81 Aligned_cols=27 Identities=15% Similarity=-0.021 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCccchhhhHhHHHHHH
Q 037438 33 VAVAVAASLILDEKLHLGSVLGATLIM 59 (118)
Q Consensus 33 V~a~llg~l~LgE~lt~~~iiG~~LIl 59 (118)
+++++.+..+++-+++....+|.++.+
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~ 121 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTI 121 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchh
Confidence 455667777889999999988776643
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=13.40 E-value=1e+02 Score=20.19 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=25.0
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhCccchhhhHhHHHHHHHHH
Q 037438 21 PLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIMCGL 62 (118)
Q Consensus 21 p~~aS~~~~L~PV~a~llg~l~LgE~lt~~~iiG~~LIl~GV 62 (118)
+....+......++.++....++|.+++.....+..+++...
T Consensus 65 ~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~ 106 (199)
T d1iwga7 65 ATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLL 106 (199)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHH
T ss_pred hhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHh
Confidence 333333444444445555566778999988887776555443
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=9.63 E-value=52 Score=19.51 Aligned_cols=17 Identities=6% Similarity=-0.312 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhcccchh
Q 037438 57 LIMCGLYAVLWGKGNEM 73 (118)
Q Consensus 57 LIl~GV~l~~~~~~k~~ 73 (118)
+++.|+++...-|.|++
T Consensus 30 v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 30 IPAILMAVGFAWKYRAS 46 (91)
T ss_dssp THHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHhhheeeecc
Confidence 34444444443333333
No 6
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.23 E-value=84 Score=18.48 Aligned_cols=15 Identities=7% Similarity=0.034 Sum_probs=12.0
Q ss_pred ehHHHHHHHHHHHhh
Q 037438 4 GSGLMVTTTSWCVHV 18 (118)
Q Consensus 4 ~S~ia~~l~~~~i~~ 18 (118)
.-+++|.+|.|+.+.
T Consensus 51 Pfi~~Y~iy~W~~~~ 65 (75)
T d1ppjg_ 51 PFVAFYLVYTWGTQE 65 (75)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 347899999999764
No 7
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.77 E-value=1.3e+02 Score=14.71 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=12.7
Q ss_pred hhhHhHHHHHHHHHHHHHh
Q 037438 49 LGSVLGATLIMCGLYAVLW 67 (118)
Q Consensus 49 ~~~iiG~~LIl~GV~l~~~ 67 (118)
.+.++|+...-.|+|+-..
T Consensus 8 vglligal~~tlgiylgll 26 (32)
T d1q90l_ 8 VGLLIGALVFTLGIYLGLL 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556777777778887543
No 8
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.29 E-value=1.4e+02 Score=15.20 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=11.0
Q ss_pred hhhhHHHHHHHHHHHH
Q 037438 27 FTPLSVVAVAVAASLI 42 (118)
Q Consensus 27 ~~~L~PV~a~llg~l~ 42 (118)
.+++.|++-.+++++.
T Consensus 15 vlPiIPv~f~lLafVW 30 (37)
T d2axtk1 15 VLPVIPVLFLALAFVW 30 (37)
T ss_dssp HGGGHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4577788777777653
No 9
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=8.20 E-value=1.1e+02 Score=15.18 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=10.6
Q ss_pred hhhhhhHHHHHHHHHHHHhC
Q 037438 25 SVFTPLSVVAVAVAASLILD 44 (118)
Q Consensus 25 S~~~~L~PV~a~llg~l~Lg 44 (118)
+-.....-+++++.-|+.-.
T Consensus 13 agits~glv~aa~atwfvgr 32 (34)
T d2p7tc1 13 AGITSFGLVTAALATWFVGR 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eccchhhhHHHHHHHHhhcc
Confidence 33444555666666665543
No 10
>d2pkha1 d.190.1.2 (A:109-249) Histidine utilization repressor HutC {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=8.02 E-value=1e+02 Score=18.30 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=21.3
Q ss_pred eEEEeecCChHHHHHhhhccCCCccC
Q 037438 91 SIEISITSPNEEIKELNDSRKGDQVL 116 (118)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (118)
...+++...++|+.++-+-.+|+-++
T Consensus 83 ~~~i~a~~a~~e~a~lL~i~~g~pvl 108 (141)
T d2pkha1 83 EHVVEAILAEADECKLLQIDAGEPCL 108 (141)
T ss_dssp EEEEEEECCCHHHHHHHTCCTTSCEE
T ss_pred EEEEEEECCCHHHHHHhCCCCCCeEE
Confidence 35688999999999998888888664
Done!