Query 037441
Match_columns 366
No_of_seqs 234 out of 1262
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 12:16:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 1.2E-12 2.5E-17 97.6 6.3 53 183-235 4-59 (60)
2 PF00010 HLH: Helix-loop-helix 99.3 2.1E-12 4.5E-17 95.6 5.7 49 184-232 2-55 (55)
3 smart00353 HLH helix loop heli 99.3 4.9E-12 1.1E-16 92.4 6.0 49 188-236 1-52 (53)
4 KOG1318 Helix loop helix trans 98.8 9.7E-09 2.1E-13 103.9 7.3 59 181-239 231-293 (411)
5 KOG1319 bHLHZip transcription 98.5 7.9E-08 1.7E-12 87.7 4.9 63 184-246 63-132 (229)
6 cd04895 ACT_ACR_1 ACT domain-c 98.3 8.6E-06 1.9E-10 64.2 9.4 67 296-363 3-69 (72)
7 cd04897 ACT_ACR_3 ACT domain-c 98.2 1.1E-05 2.3E-10 64.1 9.4 68 296-364 3-70 (75)
8 cd04927 ACT_ACR-like_2 Second 98.2 9.4E-06 2E-10 64.0 9.1 71 295-366 1-75 (76)
9 cd04896 ACT_ACR-like_3 ACT dom 98.2 1.2E-05 2.6E-10 63.9 9.1 67 296-364 2-70 (75)
10 KOG4304 Transcriptional repres 98.1 1.8E-06 3.9E-11 83.0 3.9 54 184-237 33-94 (250)
11 cd04900 ACT_UUR-like_1 ACT dom 98.1 3.9E-05 8.4E-10 59.6 10.6 70 296-366 3-73 (73)
12 KOG3561 Aryl-hydrocarbon recep 98.1 3.5E-06 7.6E-11 91.8 5.1 51 184-234 21-75 (803)
13 KOG2483 Upstream transcription 98.1 1.3E-05 2.9E-10 76.2 8.1 62 182-243 58-122 (232)
14 cd04925 ACT_ACR_2 ACT domain-c 98.0 5.2E-05 1.1E-09 59.3 9.9 69 296-364 2-70 (74)
15 KOG2588 Predicted DNA-binding 98.0 4E-06 8.6E-11 91.8 2.9 62 182-243 275-337 (953)
16 KOG3960 Myogenic helix-loop-he 97.9 2.3E-05 5.1E-10 74.7 6.5 70 170-243 109-180 (284)
17 cd04899 ACT_ACR-UUR-like_2 C-t 97.7 0.0005 1.1E-08 51.9 9.9 68 296-365 2-69 (70)
18 KOG0561 bHLH transcription fac 97.5 8.3E-05 1.8E-09 72.6 3.6 55 184-238 61-117 (373)
19 KOG4029 Transcription factor H 97.4 0.00015 3.3E-09 68.5 4.5 62 180-241 106-171 (228)
20 PLN03217 transcription factor 97.4 0.00043 9.3E-09 56.1 5.9 51 195-245 19-75 (93)
21 cd04926 ACT_ACR_4 C-terminal 97.2 0.0032 6.9E-08 48.8 9.4 66 296-363 3-68 (72)
22 cd04928 ACT_TyrKc Uncharacteri 97.2 0.0032 7E-08 49.1 9.2 64 296-362 3-67 (68)
23 PRK05007 PII uridylyl-transfer 97.2 0.0019 4.2E-08 72.2 10.2 72 291-364 805-876 (884)
24 cd04873 ACT_UUR-ACR-like ACT d 97.2 0.0069 1.5E-07 45.1 10.2 68 296-365 2-69 (70)
25 PF13740 ACT_6: ACT domain; PD 96.9 0.016 3.5E-07 45.3 10.3 65 294-362 2-66 (76)
26 PRK00275 glnD PII uridylyl-tra 96.8 0.007 1.5E-07 67.9 10.8 79 284-363 802-886 (895)
27 PRK01759 glnD PII uridylyl-tra 96.7 0.0068 1.5E-07 67.7 10.0 71 292-364 781-851 (854)
28 PF01842 ACT: ACT domain; Int 96.7 0.016 3.4E-07 42.7 8.4 63 296-361 2-64 (66)
29 cd04893 ACT_GcvR_1 ACT domains 96.6 0.024 5.1E-07 44.6 9.7 64 295-362 2-65 (77)
30 PRK04374 PII uridylyl-transfer 96.6 0.013 2.8E-07 65.6 11.1 79 284-364 784-864 (869)
31 PRK05092 PII uridylyl-transfer 96.5 0.015 3.2E-07 65.5 10.7 80 284-364 831-912 (931)
32 PRK03381 PII uridylyl-transfer 96.4 0.02 4.4E-07 63.3 11.1 68 293-363 706-773 (774)
33 cd04872 ACT_1ZPV ACT domain pr 96.3 0.023 4.9E-07 45.5 8.1 67 295-363 2-68 (88)
34 PRK03059 PII uridylyl-transfer 96.3 0.023 5E-07 63.5 10.3 69 292-364 784-852 (856)
35 TIGR01693 UTase_glnD [Protein- 96.2 0.03 6.5E-07 62.4 10.6 71 292-364 777-847 (850)
36 PRK00194 hypothetical protein; 96.1 0.036 7.8E-07 44.3 8.2 66 294-361 3-68 (90)
37 PF13291 ACT_4: ACT domain; PD 96.1 0.033 7.2E-07 43.4 7.7 64 294-359 6-70 (80)
38 TIGR01693 UTase_glnD [Protein- 96.1 0.038 8.2E-07 61.6 10.8 70 292-362 666-736 (850)
39 PRK05007 PII uridylyl-transfer 96.0 0.05 1.1E-06 61.1 11.5 79 283-362 688-772 (884)
40 PRK03381 PII uridylyl-transfer 96.0 0.044 9.5E-07 60.7 11.0 79 284-363 588-667 (774)
41 PRK01759 glnD PII uridylyl-tra 96.0 0.051 1.1E-06 60.8 11.2 79 283-363 664-745 (854)
42 cd04869 ACT_GcvR_2 ACT domains 95.9 0.12 2.5E-06 40.1 9.9 65 297-363 2-71 (81)
43 cd04875 ACT_F4HF-DF N-terminal 95.8 0.082 1.8E-06 40.7 8.7 67 296-363 1-68 (74)
44 cd04887 ACT_MalLac-Enz ACT_Mal 95.8 0.092 2E-06 39.9 8.7 62 297-360 2-63 (74)
45 cd04870 ACT_PSP_1 CT domains f 95.7 0.11 2.4E-06 40.3 8.9 65 296-363 1-65 (75)
46 COG2844 GlnD UTP:GlnB (protein 95.3 0.07 1.5E-06 58.9 9.0 78 284-363 779-858 (867)
47 PRK03059 PII uridylyl-transfer 95.2 0.14 3.1E-06 57.3 11.2 70 291-362 675-749 (856)
48 PRK00275 glnD PII uridylyl-tra 94.9 0.25 5.4E-06 55.7 11.9 69 293-362 703-777 (895)
49 PRK04435 hypothetical protein; 94.8 0.18 4E-06 44.7 8.8 70 290-360 65-134 (147)
50 cd04888 ACT_PheB-BS C-terminal 94.8 0.18 3.8E-06 38.4 7.5 64 296-360 2-65 (76)
51 cd04886 ACT_ThrD-II-like C-ter 94.8 0.24 5.2E-06 36.4 8.1 62 297-360 1-66 (73)
52 PRK05092 PII uridylyl-transfer 94.7 0.25 5.3E-06 55.9 11.4 79 283-362 719-804 (931)
53 KOG3560 Aryl-hydrocarbon recep 94.4 0.027 5.8E-07 59.3 2.8 59 171-229 13-75 (712)
54 cd04881 ACT_HSDH-Hom ACT_HSDH_ 94.3 0.22 4.7E-06 37.3 7.0 63 296-360 2-65 (79)
55 cd02116 ACT ACT domains are co 94.2 0.33 7.1E-06 32.4 7.2 34 297-330 1-34 (60)
56 cd04880 ACT_AAAH-PDT-like ACT 94.2 0.27 5.8E-06 37.8 7.4 64 298-361 3-67 (75)
57 cd04876 ACT_RelA-SpoT ACT dom 94.0 0.4 8.7E-06 33.8 7.6 61 297-359 1-61 (71)
58 KOG4447 Transcription factor T 93.6 0.05 1.1E-06 48.8 2.5 52 183-234 78-131 (173)
59 PRK04374 PII uridylyl-transfer 93.6 0.61 1.3E-05 52.5 11.6 71 292-362 688-759 (869)
60 cd04874 ACT_Af1403 N-terminal 93.3 0.76 1.7E-05 33.8 8.3 60 296-359 2-61 (72)
61 cd04905 ACT_CM-PDT C-terminal 93.3 0.81 1.8E-05 35.7 8.7 65 296-360 3-68 (80)
62 PRK08577 hypothetical protein; 93.0 1 2.2E-05 39.1 9.8 67 293-360 55-122 (136)
63 cd04884 ACT_CBS C-terminal ACT 92.9 0.67 1.5E-05 35.3 7.7 63 297-361 2-66 (72)
64 cd04931 ACT_PAH ACT domain of 92.5 0.85 1.8E-05 37.3 8.1 68 295-362 15-82 (90)
65 cd04877 ACT_TyrR N-terminal AC 92.5 0.5 1.1E-05 36.4 6.4 58 296-359 2-59 (74)
66 cd04878 ACT_AHAS N-terminal AC 92.4 1.1 2.4E-05 32.7 8.1 61 296-359 2-63 (72)
67 KOG3910 Helix loop helix trans 92.1 0.13 2.9E-06 53.7 3.5 58 181-238 524-585 (632)
68 PRK13010 purU formyltetrahydro 91.3 1 2.2E-05 44.4 8.6 67 294-362 9-78 (289)
69 cd04894 ACT_ACR-like_1 ACT dom 90.7 1.5 3.2E-05 34.1 7.1 40 296-335 2-41 (69)
70 cd04879 ACT_3PGDH-like ACT_3PG 90.2 2 4.3E-05 31.1 7.5 59 297-360 2-61 (71)
71 cd04904 ACT_AAAH ACT domain of 89.7 1.2 2.6E-05 34.5 6.2 61 299-360 5-65 (74)
72 PRK13011 formyltetrahydrofolat 89.6 2.8 6.1E-05 41.2 10.1 68 294-363 7-75 (286)
73 TIGR00655 PurU formyltetrahydr 89.3 2.9 6.2E-05 41.1 9.9 63 296-360 2-66 (280)
74 COG2844 GlnD UTP:GlnB (protein 89.3 2 4.4E-05 47.9 9.5 78 281-360 671-749 (867)
75 PRK07334 threonine dehydratase 89.2 2.1 4.6E-05 43.7 9.2 67 292-360 324-394 (403)
76 cd04929 ACT_TPH ACT domain of 89.2 2.1 4.4E-05 33.7 7.1 60 300-360 6-65 (74)
77 cd04903 ACT_LSD C-terminal ACT 89.1 2.8 6.2E-05 30.4 7.6 59 297-360 2-61 (71)
78 PRK06027 purU formyltetrahydro 89.1 2.6 5.7E-05 41.4 9.4 67 294-362 6-74 (286)
79 cd04882 ACT_Bt0572_2 C-termina 88.9 2.2 4.9E-05 31.0 6.9 57 296-360 1-59 (65)
80 cd04909 ACT_PDH-BS C-terminal 88.1 3.5 7.6E-05 30.7 7.6 35 296-330 3-37 (69)
81 KOG3898 Transcription factor N 86.9 0.54 1.2E-05 45.5 3.1 53 182-234 71-126 (254)
82 cd04908 ACT_Bt0572_1 N-termina 86.8 5.7 0.00012 29.7 8.1 37 296-332 3-39 (66)
83 PRK11589 gcvR glycine cleavage 86.5 1.9 4.1E-05 40.0 6.3 64 293-360 7-70 (190)
84 PRK11895 ilvH acetolactate syn 86.0 3.8 8.2E-05 37.2 7.8 62 296-360 4-66 (161)
85 KOG3559 Transcriptional regula 86.0 0.68 1.5E-05 47.7 3.3 43 189-231 7-53 (598)
86 KOG3558 Hypoxia-inducible fact 85.8 0.64 1.4E-05 50.6 3.1 44 187-230 50-97 (768)
87 TIGR00119 acolac_sm acetolacta 85.0 4.2 9.2E-05 36.7 7.6 62 296-360 3-65 (157)
88 COG4492 PheB ACT domain-contai 84.5 5.1 0.00011 35.6 7.6 67 292-360 70-137 (150)
89 cd04883 ACT_AcuB C-terminal AC 84.2 8.9 0.00019 28.6 8.1 34 296-329 3-36 (72)
90 cd04885 ACT_ThrD-I Tandem C-te 83.1 6 0.00013 29.9 6.7 60 298-360 2-61 (68)
91 cd04930 ACT_TH ACT domain of t 83.0 4.5 9.8E-05 34.6 6.6 64 296-360 43-106 (115)
92 KOG4395 Transcription factor A 81.4 2.7 5.8E-05 40.9 5.0 53 184-236 175-230 (285)
93 PRK11152 ilvM acetolactate syn 81.3 9.4 0.0002 30.4 7.4 61 296-360 5-66 (76)
94 PRK11092 bifunctional (p)ppGpp 79.0 7.9 0.00017 42.8 8.4 65 294-360 626-690 (702)
95 PRK10872 relA (p)ppGpp synthet 78.4 9.3 0.0002 42.6 8.7 65 294-360 666-731 (743)
96 cd04889 ACT_PDH-BS-like C-term 77.5 12 0.00025 26.8 6.4 35 297-331 1-35 (56)
97 cd04901 ACT_3PGDH C-terminal A 77.0 2.9 6.3E-05 30.9 3.2 57 298-360 3-59 (69)
98 PRK13562 acetolactate synthase 76.7 11 0.00023 30.8 6.5 63 296-360 4-67 (84)
99 PRK06737 acetolactate synthase 76.5 14 0.00031 29.4 7.1 62 296-360 4-66 (76)
100 TIGR00691 spoT_relA (p)ppGpp s 76.3 10 0.00023 41.7 8.4 64 294-359 610-673 (683)
101 PRK08198 threonine dehydratase 73.0 22 0.00048 36.1 9.4 68 291-360 324-395 (404)
102 COG0788 PurU Formyltetrahydrof 72.4 24 0.00051 34.9 8.8 66 293-360 6-73 (287)
103 COG3830 ACT domain-containing 71.8 10 0.00022 31.4 5.3 68 294-363 3-70 (90)
104 cd04937 ACT_AKi-DapG-BS_2 ACT 71.8 22 0.00047 26.4 6.8 57 296-362 3-62 (64)
105 cd04906 ACT_ThrD-I_1 First of 70.4 30 0.00064 27.4 7.7 63 295-360 2-64 (85)
106 PRK11589 gcvR glycine cleavage 70.0 31 0.00068 32.0 8.8 66 295-362 96-166 (190)
107 PF05088 Bac_GDH: Bacterial NA 69.9 31 0.00067 41.6 10.6 73 293-365 488-564 (1528)
108 cd04892 ACT_AK-like_2 ACT doma 69.8 29 0.00063 24.3 7.0 59 296-362 2-63 (65)
109 PF13710 ACT_5: ACT domain; PD 68.8 35 0.00075 25.8 7.4 55 303-360 1-56 (63)
110 cd04922 ACT_AKi-HSDH-ThrA_2 AC 68.6 39 0.00084 24.4 7.6 59 296-362 3-64 (66)
111 cd04902 ACT_3PGDH-xct C-termin 68.1 22 0.00047 26.2 6.2 57 298-360 3-61 (73)
112 TIGR01127 ilvA_1Cterm threonin 67.0 35 0.00075 34.4 9.2 68 291-360 302-373 (380)
113 PRK06382 threonine dehydratase 65.6 30 0.00065 35.4 8.5 68 291-360 327-398 (406)
114 CHL00100 ilvH acetohydroxyacid 64.8 34 0.00074 31.4 7.9 63 296-362 4-68 (174)
115 PRK00227 glnD PII uridylyl-tra 60.4 60 0.0013 36.1 10.1 70 292-363 544-614 (693)
116 COG0317 SpoT Guanosine polypho 60.1 34 0.00074 38.0 8.1 64 294-359 627-690 (701)
117 PRK08178 acetolactate synthase 59.8 61 0.0013 27.1 7.7 64 293-360 7-71 (96)
118 TIGR01268 Phe4hydrox_tetr phen 59.0 37 0.00079 35.7 7.7 67 295-361 17-83 (436)
119 PF02120 Flg_hook: Flagellar h 57.3 39 0.00084 26.2 6.1 46 283-328 26-77 (85)
120 PRK15385 magnesium transport p 56.7 86 0.0019 30.1 9.3 65 293-359 141-210 (225)
121 KOG2391 Vacuolar sorting prote 55.8 2.4E+02 0.0053 28.8 13.0 27 20-47 114-140 (365)
122 PRK11899 prephenate dehydratas 54.8 77 0.0017 31.2 8.9 52 295-346 195-246 (279)
123 KOG3582 Mlx interactors and re 54.7 4.7 0.0001 44.2 0.4 65 178-245 782-851 (856)
124 cd04915 ACT_AK-Ectoine_2 ACT d 53.7 48 0.001 25.0 5.8 51 304-362 14-64 (66)
125 cd04920 ACT_AKiii-DAPDC_2 ACT 53.5 57 0.0012 24.2 6.1 50 303-362 12-61 (63)
126 cd04890 ACT_AK-like_1 ACT doma 53.1 61 0.0013 23.4 6.2 24 303-326 12-35 (62)
127 cd04919 ACT_AK-Hom3_2 ACT doma 52.1 88 0.0019 22.6 7.7 59 296-362 3-64 (66)
128 cd07940 DRE_TIM_IPMS 2-isoprop 51.9 48 0.001 31.8 6.9 54 294-360 189-243 (268)
129 cd04912 ACT_AKiii-LysC-EC-like 50.8 95 0.0021 23.7 7.2 31 296-326 3-36 (75)
130 cd04918 ACT_AK1-AT_2 ACT domai 50.5 52 0.0011 24.5 5.5 52 303-362 12-63 (65)
131 PRK11898 prephenate dehydratas 50.2 75 0.0016 31.1 8.0 66 295-360 197-264 (283)
132 cd04916 ACT_AKiii-YclM-BS_2 AC 48.9 98 0.0021 22.2 7.0 60 296-363 3-65 (66)
133 cd04923 ACT_AK-LysC-DapG-like_ 47.9 91 0.002 21.9 6.3 56 297-362 3-61 (63)
134 KOG4447 Transcription factor T 47.6 10 0.00023 34.3 1.4 42 190-231 29-72 (173)
135 cd07943 DRE_TIM_HOA 4-hydroxy- 46.4 59 0.0013 31.1 6.5 38 295-333 186-224 (263)
136 cd04917 ACT_AKiii-LysC-EC_2 AC 43.7 1.3E+02 0.0027 22.0 6.8 57 296-362 3-62 (64)
137 cd04907 ACT_ThrD-I_2 Second of 43.6 1.6E+02 0.0035 23.3 7.9 62 295-360 2-63 (81)
138 TIGR01270 Trp_5_monoox tryptop 43.1 72 0.0016 33.8 6.9 64 296-360 33-97 (464)
139 cd07937 DRE_TIM_PC_TC_5S Pyruv 43.0 61 0.0013 31.4 6.1 38 295-333 193-231 (275)
140 cd04932 ACT_AKiii-LysC-EC_1 AC 41.7 1.6E+02 0.0036 22.8 8.0 25 302-326 12-36 (75)
141 PRK08526 threonine dehydratase 41.5 98 0.0021 31.9 7.6 68 291-360 323-394 (403)
142 PF02344 Myc-LZ: Myc leucine z 40.0 31 0.00067 23.2 2.4 17 191-207 13-29 (32)
143 cd07944 DRE_TIM_HOA_like 4-hyd 39.8 71 0.0015 30.9 6.0 54 294-360 183-237 (266)
144 cd07939 DRE_TIM_NifV Streptomy 39.3 85 0.0018 29.9 6.4 54 295-361 183-237 (259)
145 PF14689 SPOB_a: Sensor_kinase 38.6 92 0.002 23.4 5.2 45 188-239 13-57 (62)
146 cd04934 ACT_AK-Hom3_1 CT domai 37.9 1.9E+02 0.0041 22.4 7.7 31 296-326 3-36 (73)
147 cd03174 DRE_TIM_metallolyase D 36.9 89 0.0019 29.2 6.1 53 295-360 191-244 (265)
148 COG0077 PheA Prephenate dehydr 36.2 2.1E+02 0.0045 28.4 8.6 65 295-359 195-260 (279)
149 cd04924 ACT_AK-Arch_2 ACT doma 35.6 1.6E+02 0.0035 20.9 7.4 59 296-362 3-64 (66)
150 PRK10622 pheA bifunctional cho 35.4 2.1E+02 0.0045 29.5 8.8 48 299-346 302-349 (386)
151 COG4747 ACT domain-containing 34.3 1.3E+02 0.0028 26.5 6.0 38 296-333 5-42 (142)
152 cd04868 ACT_AK-like ACT domain 34.3 1.3E+02 0.0029 20.2 5.3 24 304-327 13-36 (60)
153 KOG3582 Mlx interactors and re 33.8 9.6 0.00021 41.9 -1.1 61 182-242 650-715 (856)
154 cd07947 DRE_TIM_Re_CS Clostrid 33.8 1.1E+02 0.0023 30.1 6.2 53 295-360 204-257 (279)
155 PRK03094 hypothetical protein; 33.6 93 0.002 25.2 4.7 55 308-362 10-79 (80)
156 COG2716 GcvR Glycine cleavage 31.4 1.5E+02 0.0033 27.4 6.3 66 292-359 90-160 (176)
157 TIGR02090 LEU1_arch isopropylm 31.3 1.4E+02 0.0031 30.1 6.9 38 295-333 185-223 (363)
158 PRK09224 threonine dehydratase 31.2 2.8E+02 0.006 29.5 9.2 67 291-360 325-391 (504)
159 PF03698 UPF0180: Uncharacteri 31.2 98 0.0021 25.0 4.5 56 307-362 9-79 (80)
160 cd04936 ACT_AKii-LysC-BS-like_ 30.9 1.9E+02 0.0041 20.2 6.5 50 303-362 12-61 (63)
161 TIGR02079 THD1 threonine dehyd 30.7 2.8E+02 0.0061 28.5 9.0 68 291-360 322-390 (409)
162 cd04891 ACT_AK-LysC-DapG-like_ 30.4 1.7E+02 0.0036 20.1 5.3 26 302-327 9-34 (61)
163 PHA02568 J baseplate assembly 29.9 2.2E+02 0.0048 28.3 7.7 75 291-365 164-243 (300)
164 cd04933 ACT_AK1-AT_1 ACT domai 29.6 2.8E+02 0.0061 21.9 8.1 31 296-326 3-36 (78)
165 cd04935 ACT_AKiii-DAPDC_1 ACT 29.1 2.7E+02 0.0059 21.5 7.8 25 302-326 12-36 (75)
166 TIGR01124 ilvA_2Cterm threonin 28.8 2.9E+02 0.0062 29.4 8.8 66 291-360 322-387 (499)
167 COG0527 LysC Aspartokinases [A 28.3 2.7E+02 0.0058 29.3 8.4 67 287-363 376-445 (447)
168 TIGR01269 Tyr_3_monoox tyrosin 28.3 1.9E+02 0.0042 30.6 7.2 62 296-361 41-107 (457)
169 cd04911 ACT_AKiii-YclM-BS_1 AC 28.3 1.8E+02 0.0038 23.2 5.5 24 302-325 12-35 (76)
170 PLN02551 aspartokinase 28.2 2.6E+02 0.0056 30.0 8.4 66 290-363 441-508 (521)
171 cd04921 ACT_AKi-HSDH-ThrA-like 28.1 2.1E+02 0.0046 21.5 5.9 32 296-327 3-37 (80)
172 PRK12331 oxaloacetate decarbox 27.6 1.2E+02 0.0027 31.8 5.8 38 295-333 198-236 (448)
173 PRK12483 threonine dehydratase 27.4 3.7E+02 0.008 28.9 9.4 65 291-359 342-407 (521)
174 cd07941 DRE_TIM_LeuA3 Desulfob 27.4 1.6E+02 0.0035 28.4 6.2 39 295-334 196-235 (273)
175 COG0440 IlvH Acetolactate synt 26.8 2.5E+02 0.0054 25.7 6.8 64 296-362 6-70 (163)
176 PRK08210 aspartate kinase I; R 26.6 2.3E+02 0.0049 28.8 7.4 66 287-362 332-400 (403)
177 PRK14041 oxaloacetate decarbox 26.6 1.3E+02 0.0028 31.9 5.7 39 295-334 197-236 (467)
178 PRK07431 aspartate kinase; Pro 26.6 2.7E+02 0.0058 30.0 8.3 64 289-362 514-580 (587)
179 PRK00341 hypothetical protein; 26.5 1.9E+02 0.0042 23.6 5.6 62 295-359 18-82 (91)
180 PF13840 ACT_7: ACT domain ; P 26.3 83 0.0018 23.6 3.2 34 293-326 5-42 (65)
181 PHA00198 nonstructural protein 25.2 27 0.00058 28.3 0.3 43 3-45 26-79 (86)
182 COG3074 Uncharacterized protei 25.1 97 0.0021 24.7 3.3 25 221-245 13-37 (79)
183 PRK14633 hypothetical protein; 25.0 3.9E+02 0.0084 23.8 7.7 49 310-363 9-57 (150)
184 PRK14645 hypothetical protein; 24.7 4.3E+02 0.0092 23.7 8.0 52 309-363 13-65 (154)
185 PRK00227 glnD PII uridylyl-tra 24.6 1.1E+02 0.0024 34.0 5.0 60 295-363 632-691 (693)
186 PRK11858 aksA trans-homoaconit 24.6 1.9E+02 0.004 29.5 6.3 53 294-359 188-241 (378)
187 PF06005 DUF904: Protein of un 24.4 1.2E+02 0.0025 24.0 3.8 23 221-243 13-35 (72)
188 PRK08639 threonine dehydratase 24.0 4E+02 0.0086 27.4 8.7 68 291-360 333-401 (420)
189 TIGR00656 asp_kin_monofn aspar 23.6 3.3E+02 0.0072 27.5 7.9 62 291-362 334-398 (401)
190 PRK08195 4-hyroxy-2-oxovalerat 23.2 2E+02 0.0044 28.9 6.2 40 293-333 188-228 (337)
191 PRK14637 hypothetical protein; 23.0 4.4E+02 0.0095 23.5 7.7 50 303-356 6-56 (151)
192 PRK07431 aspartate kinase; Pro 22.4 2.9E+02 0.0063 29.6 7.6 66 287-362 341-409 (587)
193 PF09849 DUF2076: Uncharacteri 22.3 2.2E+02 0.0047 27.7 5.9 17 228-244 57-73 (247)
194 PRK14646 hypothetical protein; 21.8 5.8E+02 0.013 22.8 8.3 52 309-363 11-63 (155)
195 PRK06291 aspartate kinase; Pro 21.7 4.1E+02 0.0089 27.7 8.3 67 288-362 392-461 (465)
196 TIGR00656 asp_kin_monofn aspar 21.2 5.2E+02 0.011 26.1 8.8 43 285-327 250-296 (401)
197 COG4710 Predicted DNA-binding 21.0 2E+02 0.0043 23.1 4.4 32 197-232 15-47 (80)
198 TIGR02660 nifV_homocitr homoci 20.9 2.8E+02 0.006 28.0 6.7 38 295-333 186-224 (365)
199 PRK09977 putative Mg(2+) trans 20.7 7.1E+02 0.015 23.6 9.0 67 289-360 139-205 (215)
200 TIGR02865 spore_II_E stage II 20.6 2.8E+02 0.006 31.2 7.2 58 306-363 465-522 (764)
201 PRK08841 aspartate kinase; Val 20.5 3E+02 0.0065 28.3 6.9 64 289-362 313-376 (392)
202 TIGR03217 4OH_2_O_val_ald 4-hy 20.5 3E+02 0.0064 27.7 6.7 40 293-333 187-227 (333)
203 PRK00907 hypothetical protein; 20.5 3.2E+02 0.0069 22.5 5.8 64 294-359 17-83 (92)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.37 E-value=1.2e-12 Score=97.55 Aligned_cols=53 Identities=42% Similarity=0.702 Sum_probs=50.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhcCCCC---CCCCcchHHHHHHHHHHHHHHHH
Q 037441 183 LAQDHIMAERKRREKLSQRFIALSAILPGL---KKMDKASVLGDAIRYVKELQERV 235 (366)
Q Consensus 183 ~~~~h~~~ER~RR~kln~~~~~LrslvP~~---~K~dKasiL~~AI~YIk~Lq~~v 235 (366)
.+..|+..||+||++||..|..|+++||.. .|+||++||..||+||+.|+.++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999987 89999999999999999999876
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.33 E-value=2.1e-12 Score=95.59 Aligned_cols=49 Identities=43% Similarity=0.707 Sum_probs=46.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcCCCC-----CCCCcchHHHHHHHHHHHHH
Q 037441 184 AQDHIMAERKRREKLSQRFIALSAILPGL-----KKMDKASVLGDAIRYVKELQ 232 (366)
Q Consensus 184 ~~~h~~~ER~RR~kln~~~~~LrslvP~~-----~K~dKasiL~~AI~YIk~Lq 232 (366)
+..|+..||+||.+||+.|..|+.+||.. .|.+|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 56899999999999999999999999976 68999999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.30 E-value=4.9e-12 Score=92.39 Aligned_cols=49 Identities=43% Similarity=0.652 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCC---CCCCCcchHHHHHHHHHHHHHHHHH
Q 037441 188 IMAERKRREKLSQRFIALSAILPG---LKKMDKASVLGDAIRYVKELQERVK 236 (366)
Q Consensus 188 ~~~ER~RR~kln~~~~~LrslvP~---~~K~dKasiL~~AI~YIk~Lq~~v~ 236 (366)
+..||+||++||+.|..|+++||. ..|++|++||..||+||+.|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999994 6799999999999999999999876
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.79 E-value=9.7e-09 Score=103.94 Aligned_cols=59 Identities=27% Similarity=0.493 Sum_probs=53.0
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHhhcCCCC----CCCCcchHHHHHHHHHHHHHHHHHHHH
Q 037441 181 PALAQDHIMAERKRREKLSQRFIALSAILPGL----KKMDKASVLGDAIRYVKELQERVKVLE 239 (366)
Q Consensus 181 ~~~~~~h~~~ER~RR~kln~~~~~LrslvP~~----~K~dKasiL~~AI~YIk~Lq~~v~~L~ 239 (366)
..++..|+++|||||++||+++..|..|||.+ .|..|..||..+++||+.||+..++..
T Consensus 231 r~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~ 293 (411)
T KOG1318|consen 231 RRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRAR 293 (411)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 44577999999999999999999999999987 477899999999999999999888543
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.55 E-value=7.9e-08 Score=87.75 Aligned_cols=63 Identities=29% Similarity=0.472 Sum_probs=56.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcCCCC-------CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 037441 184 AQDHIMAERKRREKLSQRFIALSAILPGL-------KKMDKASVLGDAIRYVKELQERVKVLEEQTKKRT 246 (366)
Q Consensus 184 ~~~h~~~ER~RR~kln~~~~~LrslvP~~-------~K~dKasiL~~AI~YIk~Lq~~v~~L~~~~~~~~ 246 (366)
+.+|.-+||+||+-|+..+..|+.|||.+ .|..||.||..+|+||.+|.+++.+.+++...+.
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~ 132 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLR 132 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999955 3788999999999999999999988887665443
No 6
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.25 E-value=8.6e-06 Score=64.19 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=57.7
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
+|+|.+.+++|+|.+|.++|..+||+|..|.|++.|+++.+.+.+... ++..++-.+..+.|+.+|.
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~-~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ-LGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999997666544 5556665677788888875
No 7
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.22 E-value=1.1e-05 Score=64.14 Aligned_cols=68 Identities=10% Similarity=0.169 Sum_probs=55.2
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHHh
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFLK 364 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~~ 364 (366)
+|.|.|..|+|+|.+|..+|-.+|+.|.+|.|.|.|+++.+.+.+.-.. +..++-++..+.|+.+|..
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~-g~kl~~~~~~~~l~~~L~~ 70 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKD-GRTLSTEGERQRVIKCLEA 70 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCC-CCccCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999976665554 4466555555555555543
No 8
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.22 E-value=9.4e-06 Score=64.01 Aligned_cols=71 Identities=23% Similarity=0.305 Sum_probs=54.2
Q ss_pred EEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEE-eCCcEEEEEEEEEeCCCccc---CHHHHHHHHHHHHHhhC
Q 037441 295 VLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLP-FGNSTLDITIIALKNAEFCT---TMKDLVKDIRLAFLKLM 366 (366)
Q Consensus 295 vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~-~g~~~l~~tI~aq~~~~~~l---sv~dLv~~L~~aL~~~~ 366 (366)
++|+|.|++++|+|.+|..+|..+||.|+.|.+.+ .++.+++.+++...++. .. ..++|.+.|+.+|.+-|
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~~~ 75 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGDSM 75 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHchhc
Confidence 47899999999999999999999999999999996 89999997666433322 11 23456666666665543
No 9
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.20 E-value=1.2e-05 Score=63.89 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=54.5
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeE--EeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHHh
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVL--PFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFLK 364 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs--~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~~ 364 (366)
+|.|.|.+|+|+|.+|..+|..+||+|..|.|+ +.|.++.+.+.+ ...++ .++-.+-.+.|+.+|..
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~-kl~d~~~~~~L~~~L~~ 70 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGK-KIMDPKKQAALCARLRE 70 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCC-ccCCHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999 999999998777 54443 46544555566665543
No 10
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.13 E-value=1.8e-06 Score=82.97 Aligned_cols=54 Identities=22% Similarity=0.413 Sum_probs=47.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcCCC--------CCCCCcchHHHHHHHHHHHHHHHHHH
Q 037441 184 AQDHIMAERKRREKLSQRFIALSAILPG--------LKKMDKASVLGDAIRYVKELQERVKV 237 (366)
Q Consensus 184 ~~~h~~~ER~RR~kln~~~~~LrslvP~--------~~K~dKasiL~~AI~YIk~Lq~~v~~ 237 (366)
+..|-+.|||||.|||+-+..|+.|||. .+|++||.||.-+++|++.|+.....
T Consensus 33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 4467799999999999999999999993 26889999999999999999976553
No 11
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.13 E-value=3.9e-05 Score=59.57 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=55.7
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEe-CCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHHhhC
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPF-GNSTLDITIIALKNAEFCTTMKDLVKDIRLAFLKLM 366 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~-g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~~~~ 366 (366)
.|.|.|.+++|+|.+|..+|..+||+|+.|.+.+. ++.+++.+.+. -.++..+..++..++|+..|.+.+
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~-~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVL-DPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEE-CCCCCCCChHHHHHHHHHHHHhhC
Confidence 57899999999999999999999999999999888 58888865554 344545555666677888776653
No 12
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.07 E-value=3.5e-06 Score=91.76 Aligned_cols=51 Identities=25% Similarity=0.438 Sum_probs=48.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcCCCC----CCCCcchHHHHHHHHHHHHHHH
Q 037441 184 AQDHIMAERKRREKLSQRFIALSAILPGL----KKMDKASVLGDAIRYVKELQER 234 (366)
Q Consensus 184 ~~~h~~~ER~RR~kln~~~~~LrslvP~~----~K~dKasiL~~AI~YIk~Lq~~ 234 (366)
+..|+.+|||||++||..+..|.+|||.+ -|+||.+||..||.+||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 67899999999999999999999999976 5999999999999999999985
No 13
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.06 E-value=1.3e-05 Score=76.17 Aligned_cols=62 Identities=21% Similarity=0.356 Sum_probs=51.9
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHhhcCCCC--CCCC-cchHHHHHHHHHHHHHHHHHHHHHHHh
Q 037441 182 ALAQDHIMAERKRREKLSQRFIALSAILPGL--KKMD-KASVLGDAIRYVKELQERVKVLEEQTK 243 (366)
Q Consensus 182 ~~~~~h~~~ER~RR~kln~~~~~LrslvP~~--~K~d-KasiL~~AI~YIk~Lq~~v~~L~~~~~ 243 (366)
..+..|+.-||+||..|++.|..|+.+||.. .+.. .++||..|++||+.|+.+......+++
T Consensus 58 ~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e 122 (232)
T KOG2483|consen 58 SSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIE 122 (232)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 4467899999999999999999999999975 3333 689999999999999988776655443
No 14
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.04 E-value=5.2e-05 Score=59.27 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=53.0
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHHh
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFLK 364 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~~ 364 (366)
+|+|.+.+++|+|.+|..+|..+|+.|+.|.+.+.|+.+++.+.+....++..+..++-.++|+++|.+
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~ 70 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDN 70 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999986655533313334344444566666554
No 15
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.96 E-value=4e-06 Score=91.77 Aligned_cols=62 Identities=27% Similarity=0.509 Sum_probs=57.3
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHhhcCCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 037441 182 ALAQDHIMAERKRREKLSQRFIALSAILPGL-KKMDKASVLGDAIRYVKELQERVKVLEEQTK 243 (366)
Q Consensus 182 ~~~~~h~~~ER~RR~kln~~~~~LrslvP~~-~K~dKasiL~~AI~YIk~Lq~~v~~L~~~~~ 243 (366)
.++++|+++|||.|.-||+++..|+.+||+. .|..|.++|..||+||++|+...+.++.+..
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~ 337 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENA 337 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhh
Confidence 6789999999999999999999999999986 7999999999999999999999888876544
No 16
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.90 E-value=2.3e-05 Score=74.67 Aligned_cols=70 Identities=27% Similarity=0.443 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHH-hhcCCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 037441 170 GTKRSYPVTRTPALAQDHIMAERKRREKLSQRFIAL-SAILPGL-KKMDKASVLGDAIRYVKELQERVKVLEEQTK 243 (366)
Q Consensus 170 ~~k~~~~~~r~~~~~~~h~~~ER~RR~kln~~~~~L-rslvP~~-~K~dKasiL~~AI~YIk~Lq~~v~~L~~~~~ 243 (366)
.+||.....|+ .+-.+.||||=+|+|+.|.+| |.-.++. ...-|.-||..||+||..||.-++++.++..
T Consensus 109 ckrks~svDRR----KAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 109 CKRKSTSVDRR----KAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred ccccccchhHH----HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 34454444554 344589999999999999999 5666765 7889999999999999999999998877544
No 17
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.69 E-value=0.0005 Score=51.92 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=55.1
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHHhh
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFLKL 365 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~~~ 365 (366)
+|.|.+..++|+|.+|+.+|.++++.|+++.+.+.++.+++ ++..+-.++..... +..+.|+++|.+.
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~-~f~i~~~~~~~~~~-~~~~~i~~~l~~~ 69 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAED-VFYVTDADGQPLDP-ERQEALRAALGEA 69 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEE-EEEEECCCCCcCCH-HHHHHHHHHHHhh
Confidence 57899999999999999999999999999999998887775 56666555544443 5667788888764
No 18
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.48 E-value=8.3e-05 Score=72.60 Aligned_cols=55 Identities=27% Similarity=0.436 Sum_probs=48.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcCCC--CCCCCcchHHHHHHHHHHHHHHHHHHH
Q 037441 184 AQDHIMAERKRREKLSQRFIALSAILPG--LKKMDKASVLGDAIRYVKELQERVKVL 238 (366)
Q Consensus 184 ~~~h~~~ER~RR~kln~~~~~LrslvP~--~~K~dKasiL~~AI~YIk~Lq~~v~~L 238 (366)
+.--+--||||-.-||..|..||+|+|. ..|.+||+||+.+.+||.+|+.+.-+|
T Consensus 61 ReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 61 REIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 4445567999999999999999999996 479999999999999999999876654
No 19
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.42 E-value=0.00015 Score=68.52 Aligned_cols=62 Identities=31% Similarity=0.394 Sum_probs=53.5
Q ss_pred CcchhhhhhHHHHHHHHHHHHHHHHHhhcCCC----CCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 037441 180 TPALAQDHIMAERKRREKLSQRFIALSAILPG----LKKMDKASVLGDAIRYVKELQERVKVLEEQ 241 (366)
Q Consensus 180 ~~~~~~~h~~~ER~RR~kln~~~~~LrslvP~----~~K~dKasiL~~AI~YIk~Lq~~v~~L~~~ 241 (366)
....+..++..||+|=..+|..|..||.+||. .+|..|..+|..||.||++|++-++.-+..
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 34456678888999999999999999999993 578999999999999999999988776643
No 20
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.38 E-value=0.00043 Score=56.06 Aligned_cols=51 Identities=29% Similarity=0.526 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhcCCCC------CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037441 195 REKLSQRFIALSAILPGL------KKMDKASVLGDAIRYVKELQERVKVLEEQTKKR 245 (366)
Q Consensus 195 R~kln~~~~~LrslvP~~------~K~dKasiL~~AI~YIk~Lq~~v~~L~~~~~~~ 245 (366)
-+.|++.+..|++|+|.. .|..-+-||+|++.||+.|+.+|..|.+.+.++
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~L 75 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSEL 75 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999953 344445589999999999999999999877553
No 21
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.25 E-value=0.0032 Score=48.84 Aligned_cols=66 Identities=12% Similarity=0.198 Sum_probs=51.6
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
.|.|.++.++|+|.+|..+|.++|+.|+.+.+.+.++.+++ ++..+-.++.... .+..++|+++|.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d-~f~v~~~~~~~~~-~~~~~~l~~~l~ 68 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVN-VFYVTDANGNPVD-PKTIEAVRQEIG 68 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEE-EEEEECCCCCcCC-HHHHHHHHHHhc
Confidence 46788999999999999999999999999999988887665 5555544444443 356677887774
No 22
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.23 E-value=0.0032 Score=49.14 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=49.0
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEe-CCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPF-GNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~-g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
.|-|.|+.++|+|.+|..+|..+||+|+.|.+.+. +|.+++.+++..-+.+ ..++|-++|+.+|
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~---~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG---ETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc---chHHHHHHHHHhh
Confidence 46688999999999999999999999999999755 5667775444433332 4567777777765
No 23
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.16 E-value=0.0019 Score=72.16 Aligned_cols=72 Identities=18% Similarity=0.321 Sum_probs=58.9
Q ss_pred eCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHHh
Q 037441 291 SDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFLK 364 (366)
Q Consensus 291 ~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~~ 364 (366)
++.-.+|+|.+.+++|+|.+|..+|..+||+|.+|.|+|.|+++.+++++... ++..++ .+..+.|+++|..
T Consensus 805 s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~-~g~~l~-~~~~~~l~~~L~~ 876 (884)
T PRK05007 805 TDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATA-DRRALN-EELQQELRQRLTE 876 (884)
T ss_pred CCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcC-CCCcCC-HHHHHHHHHHHHH
Confidence 35567999999999999999999999999999999999999999998777554 444666 4455666666554
No 24
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.15 E-value=0.0069 Score=45.14 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=53.0
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHHhh
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFLKL 365 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~~~ 365 (366)
.|.|.|+.++|++.+|+.+|.++|+.|..+.+.+.++... ..+...-+++..++ ++-.+.|+..|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERAL-DVFYVTDSDGRPLD-PERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEE-EEEEEECCCCCcCC-HHHHHHHHHHHHhh
Confidence 4679999999999999999999999999999988877544 45666555544443 46777788887654
No 25
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.87 E-value=0.016 Score=45.34 Aligned_cols=65 Identities=9% Similarity=0.181 Sum_probs=49.5
Q ss_pred eEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 294 ~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
.++|.+.+++++|++..|..+|.++|.+|++++..+.++.+. ..+.+..... +.++|.+.|....
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~-~~~~v~~~~~---~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFT-LIMLVSIPED---SLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEE-EEEEEEESHH---HHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEE-EEEEEEeCcc---cHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999765 5666666622 5566666665543
No 26
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.82 E-value=0.007 Score=67.87 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=59.3
Q ss_pred CeEEEEE--eCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCH----HHHHHH
Q 037441 284 PEIEARV--SDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTM----KDLVKD 357 (366)
Q Consensus 284 p~VeVrv--~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv----~dLv~~ 357 (366)
|.|.+.- .++...|.|.+..++|+|.+|..+|..+||+|+.|.|.|.|+.+++++++... ++..++- ++|.+.
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~~~ 880 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQDA 880 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECC-CCCCCCCHHHHHHHHHH
Confidence 4454432 34567899999999999999999999999999999999999999996666544 3334433 345555
Q ss_pred HHHHHH
Q 037441 358 IRLAFL 363 (366)
Q Consensus 358 L~~aL~ 363 (366)
|..+|.
T Consensus 881 L~~~L~ 886 (895)
T PRK00275 881 ICEQLD 886 (895)
T ss_pred HHHHHh
Confidence 555554
No 27
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.75 E-value=0.0068 Score=67.65 Aligned_cols=71 Identities=15% Similarity=0.289 Sum_probs=58.5
Q ss_pred CCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHHh
Q 037441 292 DKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFLK 364 (366)
Q Consensus 292 ~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~~ 364 (366)
+.-.+|.|.+.+++|+|.+|.++|.++||.|..|.|+|.|+++.+++++.-. ++..++-++. +.|+++|..
T Consensus 781 ~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~-~g~~l~~~~~-~~l~~~L~~ 851 (854)
T PRK01759 781 QEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQ-QGQALDEEER-KALKSRLLS 851 (854)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECC-CCCcCChHHH-HHHHHHHHH
Confidence 4567999999999999999999999999999999999999999998777654 3445664444 667666654
No 28
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.66 E-value=0.016 Score=42.68 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=45.8
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLA 361 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~a 361 (366)
.|.|.|++++|+|.+|..+|-++|+.|..+...+.++... +.+.....+ ....+.+++.|+++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVG-IVFIVIVVD--EEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTE-EEEEEEEEE--GHGHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCce-EEEEEEECC--CCCHHHHHHHHHcc
Confidence 5789999999999999999999999999999988887311 111211112 23566777777664
No 29
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.64 E-value=0.024 Score=44.56 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=51.0
Q ss_pred EEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 295 VLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 295 vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
+.|.+.|++++|+..+|-+.|.++|..|++++....++.++ +.+....+. .+.++|.+.|...-
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~-m~~~~~~~~---~~~~~l~~~l~~~~ 65 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFA-LTMLVEGSW---DAIAKLEAALPGLA 65 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEE-EEEEEEecc---ccHHHHHHHHHHHH
Confidence 57899999999999999999999999999999988888665 445555542 36777777666543
No 30
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.63 E-value=0.013 Score=65.64 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=59.8
Q ss_pred CeEEEEE--eCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 037441 284 PEIEARV--SDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLA 361 (366)
Q Consensus 284 p~VeVrv--~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~a 361 (366)
|.|.+.. .++-..|.|.+..++|+|.+|..+|..+||+|+.|.|.|.|+++++++.+.-. ++..++.++. +.|+++
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~~~-~~l~~~ 861 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDE-HDRPLSESAR-QALRDA 861 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcCChHHH-HHHHHH
Confidence 4455432 34567999999999999999999999999999999999999999997666543 3334544444 666666
Q ss_pred HHh
Q 037441 362 FLK 364 (366)
Q Consensus 362 L~~ 364 (366)
|..
T Consensus 862 L~~ 864 (869)
T PRK04374 862 LCA 864 (869)
T ss_pred HHH
Confidence 554
No 31
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.51 E-value=0.015 Score=65.54 Aligned_cols=80 Identities=23% Similarity=0.345 Sum_probs=58.8
Q ss_pred CeEEEEE--eCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 037441 284 PEIEARV--SDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLA 361 (366)
Q Consensus 284 p~VeVrv--~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~a 361 (366)
|.|.+.- .+....|.|.|.+++|+|.+|..+|..+||+|..|.|.|.|+++.+++.+. -.++..+...+....|+++
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~-d~~g~~i~~~~~~~~l~~~ 909 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVT-DLFGLKITNEARQAAIRRA 909 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEe-CCCCCcCCCHHHHHHHHHH
Confidence 4455432 345579999999999999999999999999999999999999999865554 4344445444334555555
Q ss_pred HHh
Q 037441 362 FLK 364 (366)
Q Consensus 362 L~~ 364 (366)
|..
T Consensus 910 L~~ 912 (931)
T PRK05092 910 LLA 912 (931)
T ss_pred HHH
Confidence 543
No 32
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.45 E-value=0.02 Score=63.30 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=56.9
Q ss_pred CeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 293 KDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 293 ~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
+-..|.|.+..++|+|.+|..+|..+|++|++|.|.|.|+.+++++.+ .-.++..++- + .+.|+++|+
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V-~d~~g~~~~~-~-~~~l~~~L~ 773 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYV-TGAAGGPLAD-A-RAAVEQAVL 773 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEE-ECCCCCcCch-H-HHHHHHHhh
Confidence 458999999999999999999999999999999999999999986555 4445555653 3 788888875
No 33
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.34 E-value=0.023 Score=45.48 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=53.1
Q ss_pred EEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 295 VLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 295 vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
+.|.+.|++++|++.+|.+.|-.+|+.|++.+..+.++.+. +.+.+.... ...++++|.+.|.....
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~-~~~~v~~~~-~~~~~~~L~~~l~~l~~ 68 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFT-MIMIVDISE-SNLDFAELQEELEELGK 68 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccE-EEEEEEeCC-CCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999877766543 556666553 24678888887776543
No 34
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.26 E-value=0.023 Score=63.52 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=54.0
Q ss_pred CCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHHh
Q 037441 292 DKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFLK 364 (366)
Q Consensus 292 ~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~~ 364 (366)
++-..|.|.+.+++|+|.+|..+|..+||+|+.|.|.|.|+.+++++.+ . +.. ....+-.++|+++|..
T Consensus 784 ~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V-~-~~~--~~~~~~~~~l~~~L~~ 852 (856)
T PRK03059 784 GQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLI-D-GSG--LSDNRLQIQLETELLD 852 (856)
T ss_pred CCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEE-c-CCC--CCCHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999999999999997766 2 222 2233444555555544
No 35
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.16 E-value=0.03 Score=62.39 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=57.7
Q ss_pred CCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHHh
Q 037441 292 DKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFLK 364 (366)
Q Consensus 292 ~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~~ 364 (366)
++-.+|.|.|.+++|+|.+|.++|..+|++|.++.+.|.|+++.+. +.++...+..++- +..+.|+++|..
T Consensus 777 ~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~-F~v~~~~g~~~~~-~~~~~l~~~L~~ 847 (850)
T TIGR01693 777 RKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDV-FYVTDLFGLKLTD-EEEQRLLEVLAA 847 (850)
T ss_pred CCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeE-EEEECCCCCCCCH-HHHHHHHHHHHH
Confidence 4567999999999999999999999999999999999999999885 4445555555554 555777777664
No 36
>PRK00194 hypothetical protein; Validated
Probab=96.12 E-value=0.036 Score=44.28 Aligned_cols=66 Identities=11% Similarity=0.167 Sum_probs=51.2
Q ss_pred eEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLA 361 (366)
Q Consensus 294 ~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~a 361 (366)
.+.|.|.|++++|++.+|...|-++|+.|++.+..+.++.+. +.+.+.... ....+++|.+.|...
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~-~~~~v~~~~-~~~~~~~l~~~l~~l 68 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFT-MIMLVDISE-SKKDFAELKEELEEL 68 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeE-EEEEEEecC-CCCCHHHHHHHHHHH
Confidence 468899999999999999999999999999988877666443 455666553 234677777777654
No 37
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.11 E-value=0.033 Score=43.42 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=47.3
Q ss_pred eEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeC-CcEEEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFG-NSTLDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 294 ~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g-~~~l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
.+.|+|.+.+++|+|.+|..+|-+.|+.|.+.++.... +....+.+..++.+.. .++.|.++|+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~--~L~~ii~~L~ 70 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLE--HLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHH--HHHHHHHHHC
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHH--HHHHHHHHHH
Confidence 46788999999999999999999999999999998864 5566677888886542 3445555554
No 38
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.07 E-value=0.038 Score=61.63 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=53.0
Q ss_pred CCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeE-EeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 292 DKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVL-PFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 292 ~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs-~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
++...|.|.+.+++|+|.+|..+|..+||+|+.|.|. +.++.+++++++. -.++..+..++..+.|+.+|
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~-~~~g~~~~~~~~~~~i~~~L 736 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQ-DLFGSPPAAERVFQELLQGL 736 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEE-CCCCCCCCcHHHHHHHHHHH
Confidence 4667899999999999999999999999999999998 7788899865554 44444454444334444443
No 39
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.02 E-value=0.05 Score=61.06 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=56.7
Q ss_pred CCeEEEE--EeCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCC-cEEEEEEEEEeCCCcccCH---HHHHH
Q 037441 283 LPEIEAR--VSDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGN-STLDITIIALKNAEFCTTM---KDLVK 356 (366)
Q Consensus 283 ~p~VeVr--v~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~-~~l~~tI~aq~~~~~~lsv---~dLv~ 356 (366)
.|.|.++ ..++...|.|.|.+++|+|.+|..+|..+||+|+.|.|.+.++ .+++++++.. .++..++. +.|.+
T Consensus 688 ~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~~~~~~~~I~~ 766 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPLSQDRHQVIRK 766 (884)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCCCHHHHHHHHH
Confidence 3444443 3456789999999999999999999999999999999987766 8888655544 34444443 23455
Q ss_pred HHHHHH
Q 037441 357 DIRLAF 362 (366)
Q Consensus 357 ~L~~aL 362 (366)
.|..+|
T Consensus 767 ~L~~aL 772 (884)
T PRK05007 767 ALEQAL 772 (884)
T ss_pred HHHHHH
Confidence 555544
No 40
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.02 E-value=0.044 Score=60.65 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=60.1
Q ss_pred CeEEEEEe-CCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 284 PEIEARVS-DKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 284 p~VeVrv~-~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
+.|.++.. .+.+.|.|.|..++|++++|..+|..+|++|++|.+.+.+|.+++++++ .-..+.....++|.+.|.++|
T Consensus 588 ~~v~~~~~~~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V-~~~~~~~~~~~~l~~~L~~~L 666 (774)
T PRK03381 588 VHVEIAPADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVV-SPRFGSPPDAALLRQDLRRAL 666 (774)
T ss_pred CEEEEeeCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEE-ECCCCCcchHHHHHHHHHHHH
Confidence 44544322 4667899999999999999999999999999999999988888875444 443443344577777777776
Q ss_pred H
Q 037441 363 L 363 (366)
Q Consensus 363 ~ 363 (366)
.
T Consensus 667 ~ 667 (774)
T PRK03381 667 D 667 (774)
T ss_pred c
Confidence 4
No 41
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.97 E-value=0.051 Score=60.79 Aligned_cols=79 Identities=20% Similarity=0.216 Sum_probs=57.9
Q ss_pred CCeEEEE--EeCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEE-eCCcEEEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 283 LPEIEAR--VSDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLP-FGNSTLDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 283 ~p~VeVr--v~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~-~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
.|.|.++ ...+...|.|.|++++|+|.+|..+|..+||+|+.|.|.+ .++.+++++++... ++..++. +..+.|+
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~~~-~~~~~l~ 741 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLLEF-DRRRQLE 741 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCCCH-HHHHHHH
Confidence 3444443 3456679999999999999999999999999999999976 88999986666554 4444543 3334444
Q ss_pred HHHH
Q 037441 360 LAFL 363 (366)
Q Consensus 360 ~aL~ 363 (366)
.+|.
T Consensus 742 ~~L~ 745 (854)
T PRK01759 742 QALT 745 (854)
T ss_pred HHHH
Confidence 4443
No 42
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=95.89 E-value=0.12 Score=40.09 Aligned_cols=65 Identities=11% Similarity=0.158 Sum_probs=50.6
Q ss_pred EEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCC-----cEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 297 IRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGN-----STLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 297 IkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~-----~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
|.|.|+.++|++.+|-+.|..+|+.|.+.+..+.+. ..+.+.+...+.. ..+.++|.+.|...-.
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~--~~~~~~l~~~l~~l~~ 71 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA--GTDLDALREELEELCD 71 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC--CCCHHHHHHHHHHHHH
Confidence 679999999999999999999999999999888762 2333456666654 3577888877776543
No 43
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.81 E-value=0.082 Score=40.70 Aligned_cols=67 Identities=7% Similarity=0.054 Sum_probs=47.6
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEE-eCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLP-FGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~-~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
.|.|.|+.++|++.+|.+.|-++|+.+++.+..+ .++..+...+....... .+++++|.+.|...-.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~l~~~l~~l~~ 68 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGF-DLSREALEAAFAPVAA 68 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCC-CCCHHHHHHHHHHHHH
Confidence 3789999999999999999999999999988764 23334433333333321 2567888777766543
No 44
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.75 E-value=0.092 Score=39.90 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=47.5
Q ss_pred EEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 297 IRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 297 IkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
|+|.+..++|+|.+|+.+|.+.|..|.+.++....+....+.+..++.+.. .+++|.++|+.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~~--~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSEE--HAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCHH--HHHHHHHHHhc
Confidence 688999999999999999999999999888877655554456666665543 44566666654
No 45
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.67 E-value=0.11 Score=40.31 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=51.9
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
+|.|.+.+|+|++.+|.++|-++|+++++.+..++++.+ ...+.+.+..+ .++++|.+.|.....
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f-~~~~~v~~p~~--~~~~~l~~~l~~l~~ 65 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRL-SLGILVQIPDS--ADSEALLKDLLFKAH 65 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCee-EEEEEEEcCCC--CCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999988888754 35566666554 567888777776543
No 46
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.07 Score=58.88 Aligned_cols=78 Identities=19% Similarity=0.354 Sum_probs=60.0
Q ss_pred CeEEEE--EeCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 037441 284 PEIEAR--VSDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLA 361 (366)
Q Consensus 284 p~VeVr--v~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~a 361 (366)
|.|... ...+--+|+|.+..++|+|..|..+|..++|+|.+|.|+|+|.++.+.+++.-..+ ..++ .++.+.|.+.
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~-~~l~-~~~~q~l~~~ 856 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADG-QALN-AELRQSLLQR 856 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEecccc-ccCC-HHHHHHHHHH
Confidence 555543 23456789999999999999999999999999999999999999999666655444 4454 4555666655
Q ss_pred HH
Q 037441 362 FL 363 (366)
Q Consensus 362 L~ 363 (366)
|.
T Consensus 857 ll 858 (867)
T COG2844 857 LL 858 (867)
T ss_pred HH
Confidence 54
No 47
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.19 E-value=0.14 Score=57.33 Aligned_cols=70 Identities=11% Similarity=0.109 Sum_probs=51.7
Q ss_pred eCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeE-EeCCcEEEEEEEEEeCCCcccCH----HHHHHHHHHHH
Q 037441 291 SDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVL-PFGNSTLDITIIALKNAEFCTTM----KDLVKDIRLAF 362 (366)
Q Consensus 291 ~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs-~~g~~~l~~tI~aq~~~~~~lsv----~dLv~~L~~aL 362 (366)
..+...|-|.|..++|+|++|..+|..+||+|+.|.|. +-+|.+++.+++.. .++. ... ++|.+.|.++|
T Consensus 675 ~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~-~~~~-~~~~~~~~~i~~~l~~~l 749 (856)
T PRK03059 675 AGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLD-PEED-VHYRDIINLVEHELAERL 749 (856)
T ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeC-CCCC-CChHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999999999999995 56777888555544 3333 333 34555555544
No 48
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=94.85 E-value=0.25 Score=55.68 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=50.8
Q ss_pred CeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeE-EeCCcEEEEEEEEEeCCCccc-C----HHHHHHHHHHHH
Q 037441 293 KDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVL-PFGNSTLDITIIALKNAEFCT-T----MKDLVKDIRLAF 362 (366)
Q Consensus 293 ~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs-~~g~~~l~~tI~aq~~~~~~l-s----v~dLv~~L~~aL 362 (366)
+...|.|.|..++|+|++|..+|..+||+|+.|.|. +-+|.+++.+++.. .++..+ . .+.|.+.|.++|
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L 777 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEAL 777 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999985 45667888544444 343332 2 334555555554
No 49
>PRK04435 hypothetical protein; Provisional
Probab=94.83 E-value=0.18 Score=44.69 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=52.9
Q ss_pred EeCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 290 VSDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 290 v~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
..|+.+.|.+.+.+++|+|.+|++.|.+.|+.|+..+...-.+....+++.....+. ...+++|..+|++
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-~~~L~~Li~~L~~ 134 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-EGDIDELLEKLRN 134 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-HHHHHHHHHHHHc
Confidence 468899999999999999999999999999999887754433334445666666543 2367778777764
No 50
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.79 E-value=0.18 Score=38.38 Aligned_cols=64 Identities=13% Similarity=0.190 Sum_probs=45.8
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.|.|.+..++|++.+|+..|.+.++.|...+.....+....+.+.....+.. ..+++|.++|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~-~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMN-GDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchH-HHHHHHHHHHhc
Confidence 4788999999999999999999999998877644333344455555554432 256677777664
No 51
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.77 E-value=0.24 Score=36.42 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=43.0
Q ss_pred EEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeC----CcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 297 IRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFG----NSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 297 IkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g----~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
+.|.++.++|.|.+|+.+|.+.|+.|++....... .....+.+.....+ .-.++++.+.|+.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~--~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRG--AEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 36788999999999999999999999977765542 23333445555533 2245677776654
No 52
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.68 E-value=0.25 Score=55.88 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=55.7
Q ss_pred CCeEEEEE--eCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEE-eCCcEEEEEEEEEeCCCccc----CHHHHH
Q 037441 283 LPEIEARV--SDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLP-FGNSTLDITIIALKNAEFCT----TMKDLV 355 (366)
Q Consensus 283 ~p~VeVrv--~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~-~g~~~l~~tI~aq~~~~~~l----sv~dLv 355 (366)
.+.|.++. ..+...|.|.|..++|+|.+|..+|..+|++|+.|.|.+ .++.++++ +..+-..+... ..+.|.
T Consensus 719 ~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~-F~V~~~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 719 PLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDT-FWIQDAFGRDEDEPRRLARLA 797 (931)
T ss_pred CcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEE-EEEECCCCCCCCCHHHHHHHH
Confidence 34555543 346789999999999999999999999999999999877 56777764 44443333222 244455
Q ss_pred HHHHHHH
Q 037441 356 KDIRLAF 362 (366)
Q Consensus 356 ~~L~~aL 362 (366)
+.|..+|
T Consensus 798 ~~L~~~l 804 (931)
T PRK05092 798 KAIEDAL 804 (931)
T ss_pred HHHHHHH
Confidence 5555554
No 53
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=94.41 E-value=0.027 Score=59.34 Aligned_cols=59 Identities=27% Similarity=0.479 Sum_probs=43.2
Q ss_pred CCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhcCCC----CCCCCcchHHHHHHHHHH
Q 037441 171 TKRSYPVTRTPALAQDHIMAERKRREKLSQRFIALSAILPG----LKKMDKASVLGDAIRYVK 229 (366)
Q Consensus 171 ~k~~~~~~r~~~~~~~h~~~ER~RR~kln~~~~~LrslvP~----~~K~dKasiL~~AI~YIk 229 (366)
++|+-++.|.+.......---+|-|+|||..++.|.+|+|- ..|.||.|||.-++.|++
T Consensus 13 Rrrp~qk~rpp~~a~tkSNPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 13 RRRPLQKQRPPPKALTKSNPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred ccCCccccCCCccccccCCcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 34444444444333333344466789999999999999994 489999999999999985
No 54
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.30 E-value=0.22 Score=37.26 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=44.4
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCC-cEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGN-STLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~-~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
+|+|.+.+++|++.+|+..|.+.++.+.+....+..+ ....+.++....+ .-.+++++++|++
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETS--EAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCC--HHHHHHHHHHHHc
Confidence 6899999999999999999999999998887665532 3333344443333 2345566666663
No 55
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.25 E-value=0.33 Score=32.36 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=29.8
Q ss_pred EEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEe
Q 037441 297 IRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPF 330 (366)
Q Consensus 297 IkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~ 330 (366)
|.|.|..++|.+.+|+..|...++.|........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~ 34 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS 34 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence 4688999999999999999999999988876554
No 56
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.22 E-value=0.27 Score=37.84 Aligned_cols=64 Identities=9% Similarity=0.133 Sum_probs=46.7
Q ss_pred EEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCC-cccCHHHHHHHHHHH
Q 037441 298 RIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAE-FCTTMKDLVKDIRLA 361 (366)
Q Consensus 298 kI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~-~~lsv~dLv~~L~~a 361 (366)
-+..++++|.|.+||+.+..+|+.+++-...+..+..-.|.+...+... ....++++++.|+..
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRV 67 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 3455789999999999999999999988777766544455666666543 234667777777653
No 57
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=94.02 E-value=0.4 Score=33.81 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=42.4
Q ss_pred EEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 297 IRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 297 IkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
|+|.+.+++|.+.+|+..|.++++.+.+..+...++....+.+....... ..+.++.+.|+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ 61 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDL--EHLARIMRKLR 61 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCH--HHHHHHHHHHh
Confidence 46889999999999999999999999988877655333334444444332 23455555544
No 58
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=93.58 E-value=0.05 Score=48.83 Aligned_cols=52 Identities=31% Similarity=0.388 Sum_probs=46.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhcCCC--CCCCCcchHHHHHHHHHHHHHHH
Q 037441 183 LAQDHIMAERKRREKLSQRFIALSAILPG--LKKMDKASVLGDAIRYVKELQER 234 (366)
Q Consensus 183 ~~~~h~~~ER~RR~kln~~~~~LrslvP~--~~K~dKasiL~~AI~YIk~Lq~~ 234 (366)
++.-|++.||+|=..||+.|.+||.++|. ..|.+|.--|.-|..||..|=+-
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~v 131 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 131 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhc
Confidence 56689999999999999999999999995 47889988999999999988653
No 59
>PRK04374 PII uridylyl-transferase; Provisional
Probab=93.57 E-value=0.61 Score=52.50 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=51.6
Q ss_pred CCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEE-eCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 292 DKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLP-FGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 292 ~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~-~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
.+.+.|-|.|..++|+|++|..+|..+||+|+.|.|.+ -+|.+++.+++..-.+...-....|.+.|.++|
T Consensus 688 ~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l 759 (869)
T PRK04374 688 NDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVL 759 (869)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999999976 567788755554333321112334555555555
No 60
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.29 E-value=0.76 Score=33.76 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=41.6
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
.|+|.+.+++|.|.+++..|.+.++.|.+....+..+....+++ .+.+. -..+++.+.|+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i--~~~~~--~~~~~~~~~L~ 61 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYM--ELEGV--GDIEELVEELR 61 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEE--EEecc--ccHHHHHHHHh
Confidence 46789999999999999999999999998777655333332333 33332 24556666655
No 61
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=93.26 E-value=0.81 Score=35.69 Aligned_cols=65 Identities=8% Similarity=0.123 Sum_probs=45.8
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCc-ccCHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEF-CTTMKDLVKDIRL 360 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~-~lsv~dLv~~L~~ 360 (366)
.|.+..+.++|.|.+|++.|.++|+.+++....+..+..-.|.+....+... .-.++++.+.|+.
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3456667889999999999999999999887777665444566666666541 2244455555554
No 62
>PRK08577 hypothetical protein; Provisional
Probab=92.97 E-value=1 Score=39.05 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=50.5
Q ss_pred CeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeC-CcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 293 KDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFG-NSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 293 ~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g-~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
+.+.|+|.+.+++|+|.+|+..|.++++.+.+.+..+.. +....+.++..+.+.. ..++++.++|+.
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~-~~l~~l~~~L~~ 122 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSD-IDLEELEEELKK 122 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCch-hhHHHHHHHHHc
Confidence 467899999999999999999999999999888776654 4444455666666541 246677777654
No 63
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.93 E-value=0.67 Score=35.28 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=43.1
Q ss_pred EEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEe--CCcEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 037441 297 IRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPF--GNSTLDITIIALKNAEFCTTMKDLVKDIRLA 361 (366)
Q Consensus 297 IkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~--g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~a 361 (366)
+.|.-+.++|.|.++++.|.+.|+.|++...... +...-.+.+...++... .+++|.+.|+..
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~--~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRS--KENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecch--HHHHHHHHHhCc
Confidence 4677789999999999999999999998876654 33333344444443222 266777776543
No 64
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.53 E-value=0.85 Score=37.34 Aligned_cols=68 Identities=12% Similarity=0.207 Sum_probs=48.7
Q ss_pred EEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 295 VLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 295 vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
..|-+..++++|.|.++|..+...|+.+.+-..-+..+....|.+...++....-.++.+.+.|++.|
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~~~ 82 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRNDI 82 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHHHh
Confidence 34455668889999999999999999999888877766655666666665542234556666665544
No 65
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=92.48 E-value=0.5 Score=36.42 Aligned_cols=58 Identities=16% Similarity=0.271 Sum_probs=41.7
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
.|+|.|.+++|+|.+|+.+|.+.++.+...++.+- +. ++ +...+.+.. .++.|.++|+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~-i~--l~i~v~~~~--~L~~li~~L~ 59 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR-IY--LNFPTIEFE--KLQTLMPEIR 59 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce-EE--EEeEecCHH--HHHHHHHHHh
Confidence 47899999999999999999999999998888653 32 33 333344332 3455655554
No 66
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=92.42 E-value=1.1 Score=32.68 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=43.5
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEe-CCcEEEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPF-GNSTLDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~-g~~~l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
.|.|.+.+++|.|.+|+..|.+.++.+.......- ++....+.+.....+ -.++++...|+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD---DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH---HHHHHHHHHHh
Confidence 46788899999999999999999999988877654 444444455554422 34556666665
No 67
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=92.14 E-value=0.13 Score=53.75 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=47.8
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHhhcCCC----CCCCCcchHHHHHHHHHHHHHHHHHHH
Q 037441 181 PALAQDHIMAERKRREKLSQRFIALSAILPG----LKKMDKASVLGDAIRYVKELQERVKVL 238 (366)
Q Consensus 181 ~~~~~~h~~~ER~RR~kln~~~~~LrslvP~----~~K~dKasiL~~AI~YIk~Lq~~v~~L 238 (366)
..+|+.++..||-|=..||+.|..|--+.-- .+.-.|.-||..|+.-|-.|++||.+-
T Consensus 524 kERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 524 KERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 3567889999999988999999999766532 233467899999999999999999874
No 68
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=91.27 E-value=1 Score=44.39 Aligned_cols=67 Identities=9% Similarity=0.165 Sum_probs=47.4
Q ss_pred eEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeE--Ee-CCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVL--PF-GNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 294 ~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs--~~-g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
.+.|.|.|++++|+..+|-..|-+.|+.|++.+-. +. +..++-+.+.... ...++.++|...|...-
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~--~~~~~~~~l~~~l~~l~ 78 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQS--AEAASVDTFRQEFQPVA 78 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCC--CCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999999874 33 3333322222211 12457778777776643
No 69
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.68 E-value=1.5 Score=34.08 Aligned_cols=40 Identities=25% Similarity=0.266 Sum_probs=35.9
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEE
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTL 335 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l 335 (366)
.|.|.|+.+.|+-.++...+-++||.|+...+++-|.=.+
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCy 41 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCY 41 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEE
Confidence 5889999999999999999999999999999988777433
No 70
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=90.21 E-value=2 Score=31.11 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=42.3
Q ss_pred EEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeC-CcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 297 IRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFG-NSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 297 IkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g-~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
+.|...+++|.+.+|+..|.+.|+.|.+..+..-+ +....+++.. ++. ..++|.+.|+.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~~---~~~~l~~~l~~ 61 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DSP---VPEEVLEELKA 61 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CCC---CCHHHHHHHHc
Confidence 56789999999999999999999999988876644 2232233433 332 35677777764
No 71
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=89.71 E-value=1.2 Score=34.54 Aligned_cols=61 Identities=11% Similarity=0.224 Sum_probs=44.0
Q ss_pred EEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 299 IHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 299 I~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
+..++++|.|.+||..+...|+.+.+-..-+..+....|.+...++.. .-.++++.+.|++
T Consensus 5 f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~-~~~~~~~l~~L~~ 65 (74)
T cd04904 5 FSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVD-RGDLDQLISSLRR 65 (74)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcC-hHHHHHHHHHHHH
Confidence 445778999999999999999999988887777766666666666542 2234555555544
No 72
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=89.63 E-value=2.8 Score=41.21 Aligned_cols=68 Identities=10% Similarity=0.035 Sum_probs=49.1
Q ss_pred eEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEE-eCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLP-FGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 294 ~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~-~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
.+.|.|.|.+++|+..+|-..|-++|++|.+.+..+ .++..|.. .+.+......+.++|...|...-.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m--~~~~~~p~~~~~~~L~~~L~~l~~ 75 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFM--RVEFHSEEGLDEDALRAGFAPIAA 75 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEE--EEEEecCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999888752 34444433 334432223567777777766543
No 73
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=89.35 E-value=2.9 Score=41.07 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=48.1
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEe--CCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPF--GNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~--g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.|.|.|++++|+.++|-..|-++|+.+++++-... ++.++ ..+.+.+. +..++.++|...|..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~-mr~~v~~~-~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFF-MRVEFQLE-GFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEE-EEEEEEeC-CCCCCHHHHHHHHHH
Confidence 47899999999999999999999999999987663 34433 34444444 234678888888776
No 74
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.30 E-value=2 Score=47.86 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=57.5
Q ss_pred CCCCeEEEEEeCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEE-eCCcEEEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 281 ATLPEIEARVSDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLP-FGNSTLDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 281 ~~~p~VeVrv~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~-~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
.++..+.++...+...|-|.|+.++++++.|..++...|++|+.|.|.+ -+|.+++.+|+. ..+++-+. +|....++
T Consensus 671 ~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~-~~~g~~~~-~dr~~~~~ 748 (867)
T COG2844 671 KPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVL-EPDGFPVE-EDRRAALR 748 (867)
T ss_pred CcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEe-cCCCCccc-hhHHHHHH
Confidence 3455556677778889999999999999999999999999999999855 556699955554 44444444 44433333
Q ss_pred H
Q 037441 360 L 360 (366)
Q Consensus 360 ~ 360 (366)
.
T Consensus 749 ~ 749 (867)
T COG2844 749 G 749 (867)
T ss_pred H
Confidence 3
No 75
>PRK07334 threonine dehydratase; Provisional
Probab=89.21 E-value=2.1 Score=43.71 Aligned_cols=67 Identities=9% Similarity=0.221 Sum_probs=50.7
Q ss_pred CCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEe----CCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 292 DKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPF----GNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 292 ~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~----g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
+-.+.|+|.+.+++|+|.+|+..|.+.++.|.+.++.+- .+....+.+...+.+. -.+++|.++|++
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~--~~L~~vi~~Lr~ 394 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDA--AHLQEVIAALRA 394 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 345899999999999999999999999999998887654 3444445566666543 245677777765
No 76
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.20 E-value=2.1 Score=33.71 Aligned_cols=60 Identities=12% Similarity=0.163 Sum_probs=43.8
Q ss_pred EecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 300 HCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 300 ~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
..++++|.|.++|..++..|+.+.+-..-+..+..-.|.+...++.... .++.+...|++
T Consensus 6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~-~i~~~l~~l~~ 65 (74)
T cd04929 6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQR-RLDELVQLLKR 65 (74)
T ss_pred EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHH-HHHHHHHHHHH
Confidence 3467899999999999999999998887777666556666666665432 45555555544
No 77
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.10 E-value=2.8 Score=30.44 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=40.7
Q ss_pred EEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEe-CCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 297 IRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPF-GNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 297 IkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~-g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
|.|.+.+++|.+.+|+..|.++++.+.+...... ++..-.+. ...++. ..+++.+.|+.
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~~---~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQP---IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCCC---CCHHHHHHHHc
Confidence 5788999999999999999999999988776553 22222122 233332 55677777664
No 78
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=89.05 E-value=2.6 Score=41.37 Aligned_cols=67 Identities=9% Similarity=0.110 Sum_probs=50.2
Q ss_pred eEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEE--eCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLP--FGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 294 ~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~--~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
.+.|.+.|.+++|++.+|-++|-++|+.|++++..+ .++. |...+.+... ....++++|...|...-
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~-F~m~i~v~~~-~~~~~~~~L~~~L~~l~ 74 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGR-FFMRVEFEGD-GLIFNLETLRADFAALA 74 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCe-EEEEEEEEeC-CCCCCHHHHHHHHHHHH
Confidence 578899999999999999999999999999999888 7773 3344444441 22235777776666543
No 79
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.92 E-value=2.2 Score=30.98 Aligned_cols=57 Identities=9% Similarity=0.144 Sum_probs=39.0
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeC--CcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFG--NSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g--~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
+|.|.-+.++|.|.+++..|.+.|+.|.+....... +.. .+...++. .+++.+.|+.
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~---~v~~~ve~-----~~~~~~~L~~ 59 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKA---LLIFRTED-----IEKAIEVLQE 59 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeE---EEEEEeCC-----HHHHHHHHHH
Confidence 367788899999999999999999999766554433 222 23334433 5566666654
No 80
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.13 E-value=3.5 Score=30.72 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=30.6
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEe
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPF 330 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~ 330 (366)
.+.|.+++++|.|.+|+..|.++|+.|........
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 46788999999999999999999999987766554
No 81
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=86.89 E-value=0.54 Score=45.53 Aligned_cols=53 Identities=26% Similarity=0.300 Sum_probs=45.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHhhcCCC---CCCCCcchHHHHHHHHHHHHHHH
Q 037441 182 ALAQDHIMAERKRREKLSQRFIALSAILPG---LKKMDKASVLGDAIRYVKELQER 234 (366)
Q Consensus 182 ~~~~~h~~~ER~RR~kln~~~~~LrslvP~---~~K~dKasiL~~AI~YIk~Lq~~ 234 (366)
..+..=+..||+|--.||+.|..||.++|. ..|+.|.-.|.-|-+||..|++-
T Consensus 71 ~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 71 LRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 445567789999999999999999999994 47889999999999999988754
No 82
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=86.77 E-value=5.7 Score=29.65 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=31.7
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCC
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGN 332 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~ 332 (366)
.|.|..++++|.|.+|++.|.+.|+.|...-+.+.++
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~ 39 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE 39 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 3567889999999999999999999998877666555
No 83
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=86.49 E-value=1.9 Score=40.04 Aligned_cols=64 Identities=8% Similarity=0.156 Sum_probs=48.6
Q ss_pred CeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 293 KDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 293 ~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
..++|.+.+.+|+|++..|-++|.++|..+++++.+.+|+.+- ..+.+.... .++.+|...|..
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa-~i~lvs~~~---~~~~~le~~L~~ 70 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFT-FIMLLSGSW---NAITLIESTLPL 70 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceE-EEEEEeCCh---hHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999553 233333322 255566555543
No 84
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=86.02 E-value=3.8 Score=37.17 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=47.5
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeC-CcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFG-NSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g-~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.|.|.-++++|.|.+|...|...|+.+.+..+.+.. .....++|++.-++ -.++.|++.|..
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~---~~i~qi~kQl~K 66 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDE---QVIEQITKQLNK 66 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCH---HHHHHHHHHHhc
Confidence 577889999999999999999999999998887765 44555677766432 256666666554
No 85
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=86.01 E-value=0.68 Score=47.67 Aligned_cols=43 Identities=37% Similarity=0.497 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC----CCCCcchHHHHHHHHHHHH
Q 037441 189 MAERKRREKLSQRFIALSAILPGL----KKMDKASVLGDAIRYVKEL 231 (366)
Q Consensus 189 ~~ER~RR~kln~~~~~LrslvP~~----~K~dKasiL~~AI~YIk~L 231 (366)
-+-|.||++-|-.|..|..++|-. ...||++|+.-+..|||--
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 355889999999999999999943 5699999999999999853
No 86
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=85.79 E-value=0.64 Score=50.59 Aligned_cols=44 Identities=34% Similarity=0.486 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCC----CCCCcchHHHHHHHHHHH
Q 037441 187 HIMAERKRREKLSQRFIALSAILPGL----KKMDKASVLGDAIRYVKE 230 (366)
Q Consensus 187 h~~~ER~RR~kln~~~~~LrslvP~~----~K~dKasiL~~AI~YIk~ 230 (366)
-.-+-|-||.|=|+-|..|..+||-. .-.|||||+.-||-|++-
T Consensus 50 SRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 50 SRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 34677999999999999999999942 578999999999999873
No 87
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=85.04 E-value=4.2 Score=36.69 Aligned_cols=62 Identities=15% Similarity=0.322 Sum_probs=47.6
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeC-CcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFG-NSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g-~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.|.|.-++++|.|.+|...|...|+.+.+..+.+.+ .....++|++.- ++ -.++.|.+.|..
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~-d~--~~i~qi~kQl~K 65 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG-DD--KVLEQITKQLNK 65 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC-CH--HHHHHHHHHHhc
Confidence 577889999999999999999999999998888776 456556777764 22 356666665554
No 88
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=84.50 E-value=5.1 Score=35.58 Aligned_cols=67 Identities=9% Similarity=0.315 Sum_probs=49.8
Q ss_pred CCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEe-EEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 292 DKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSV-LPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 292 ~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asv-s~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
++.+-+.+..+.|.|.|+++|+++-..++.|++-+= .++.|+. ++|+.-... .-...+++|+.+|+.
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~A-nvtlsi~~s-sm~~~V~~ii~kl~k 137 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRA-NVTLSIDTS-SMEKDVDKIIEKLRK 137 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCcee-eEEEEEEch-hhhhhHHHHHHHHhc
Confidence 455677889999999999999999999999976553 3677765 345554443 223478888888874
No 89
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.22 E-value=8.9 Score=28.55 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=29.2
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEE
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLP 329 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~ 329 (366)
.|.+..++++|.|.++++.|.+.|+.+.+.....
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~ 36 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYP 36 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEec
Confidence 5678889999999999999999999998765443
No 90
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.10 E-value=6 Score=29.90 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=41.2
Q ss_pred EEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 298 RIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 298 kI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
+|.-+.+||-|.++++.|.. |.+|+....-..+...-.+.+..+..+. -.+++|.+.|+.
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~--~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDR--EDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 56778999999999999999 9999887765543333334555555543 245566666654
No 91
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.99 E-value=4.5 Score=34.55 Aligned_cols=64 Identities=11% Similarity=0.181 Sum_probs=44.5
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.|-+..++++|.|.+||..+...|+.+.+-..-+..+....|.+...++.... .++.+.+.|+.
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~-~~~~aL~~L~~ 106 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRS-DLLQLISSLRQ 106 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHH-HHHHHHHHHHH
Confidence 34455578899999999999999999998888777665555666666554332 34445455443
No 92
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=81.36 E-value=2.7 Score=40.88 Aligned_cols=53 Identities=26% Similarity=0.276 Sum_probs=45.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcCCCC---CCCCcchHHHHHHHHHHHHHHHHH
Q 037441 184 AQDHIMAERKRREKLSQRFIALSAILPGL---KKMDKASVLGDAIRYVKELQERVK 236 (366)
Q Consensus 184 ~~~h~~~ER~RR~kln~~~~~LrslvP~~---~K~dKasiL~~AI~YIk~Lq~~v~ 236 (366)
+.+-+..||+|-..||..|+.||..||.. .|..|-.-|.-|-.||--|-..++
T Consensus 175 r~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 175 RLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 44567899999999999999999999965 577788889999999988876554
No 93
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=81.32 E-value=9.4 Score=30.40 Aligned_cols=61 Identities=8% Similarity=0.179 Sum_probs=45.4
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeC-CcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFG-NSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g-~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.|.|...+++|.|.+|+..+..-|..|-+-++.... +.+..+++++. ++ -.++.|.+.|..
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~~--~~i~ql~kQL~K 66 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--SE--RPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--CC--chHHHHHHHHhc
Confidence 567888999999999999999999999888776643 33445666663 32 366677766654
No 94
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=79.01 E-value=7.9 Score=42.84 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=51.2
Q ss_pred eEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 294 ~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.+.|+|.+.+++|+|.+|+.+|-+.++.|.+.++..-.+.+..+.|..++.+.. .+..|..+|++
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~~--~L~~i~~~Lr~ 690 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDRV--HLANIMRKIRV 690 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCHH--HHHHHHHHHhC
Confidence 458889999999999999999999999999999877665666667777777653 44556565553
No 95
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=78.44 E-value=9.3 Score=42.57 Aligned_cols=65 Identities=9% Similarity=0.150 Sum_probs=50.1
Q ss_pred eEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeC-CcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFG-NSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 294 ~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g-~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.+.|+|.+.+++|+|.+|..+|-+.++.|++.++..-. +....+.+..++.+.. .+..|..+|++
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~--~L~~l~~~L~~ 731 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQ--VLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHH--HHHHHHHHHhc
Confidence 35888999999999999999999999999999986643 4455567777777653 44566666653
No 96
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=77.55 E-value=12 Score=26.81 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=29.8
Q ss_pred EEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeC
Q 037441 297 IRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFG 331 (366)
Q Consensus 297 IkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g 331 (366)
|.|..+.++|.|.+++..|-+.|+.|....+...+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~ 35 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR 35 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc
Confidence 45788999999999999999999999777765544
No 97
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=77.05 E-value=2.9 Score=30.91 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=37.8
Q ss_pred EEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 298 RIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 298 kI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
-+.+.+++|++.+|+..|.+.|+.+...+...-++... +.+ .++.. ..+++.++|++
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~-~~~--~~~~~---~l~~li~~l~~ 59 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGY-VVI--DIDSE---VSEELLEALRA 59 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEE-EEE--EcCCC---CCHHHHHHHHc
Confidence 35788999999999999999999996554433233221 222 33332 56677777764
No 98
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=76.68 E-value=11 Score=30.80 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=47.5
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCC-cEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGN-STLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~-~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.|.+..++++|+|.+|...+-..|..+-+-++....+ .+-.+||++..+++ -.++.|++.|..
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~--~~ieqI~kQL~K 67 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD--TSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH--HHHHHHHHHHhC
Confidence 5788889999999999999999999998877766544 34456788765554 355666666654
No 99
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=76.46 E-value=14 Score=29.41 Aligned_cols=62 Identities=10% Similarity=0.127 Sum_probs=45.1
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCC-cEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGN-STLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~-~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.|.+..++++|+|.+|...+...|..+-+-++....+ .+..+||++. +++ -.++.|++.|..
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~-~~~--~~i~qi~kQL~K 66 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV-CTE--NEATLLVSQLKK 66 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE-CCH--HHHHHHHHHHhC
Confidence 5778889999999999999999999998877765443 4555677765 333 255556555543
No 100
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=76.28 E-value=10 Score=41.70 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=50.1
Q ss_pred eEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 294 ~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
.+.|+|.+.+++|+|.+|+.+|-+.+..|.+.++..-.+.+..+.|..++.+.. .+..|..+|+
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~~--~L~~ii~~L~ 673 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNYK--HLLKIMLKIK 673 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCHH--HHHHHHHHHh
Confidence 458889999999999999999999999999999877655566667777777653 3445555554
No 101
>PRK08198 threonine dehydratase; Provisional
Probab=72.96 E-value=22 Score=36.12 Aligned_cols=68 Identities=13% Similarity=0.258 Sum_probs=49.8
Q ss_pred eCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEe----CCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 291 SDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPF----GNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 291 ~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~----g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.++.+.+.|.-+.++|.|.++++.|-+.|..|+....... ......++|..+..+.. ..++|.+.|++
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~--~~~~l~~~L~~ 395 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPE--HIEEILDALRD 395 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHH--HHHHHHHHHHH
Confidence 4667889999999999999999999999999987776542 22334456666664322 55677777764
No 102
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=72.38 E-value=24 Score=34.88 Aligned_cols=66 Identities=9% Similarity=0.130 Sum_probs=45.3
Q ss_pred CeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEE--eCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 293 KDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLP--FGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 293 ~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~--~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
....+.|+|+.++|+...|-..|-+.|+.|++++-.. .++++| ..+.-..++...+.+.|...+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FF--mR~~f~~~~~~~~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFF--MRVEFEGEGGPLDREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEE--EEEEEecCCCcccHHHHHHHHHH
Confidence 3467789999999999999999999999999887642 133333 12222223333677766666655
No 103
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=71.79 E-value=10 Score=31.38 Aligned_cols=68 Identities=10% Similarity=0.104 Sum_probs=49.9
Q ss_pred eEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 294 ~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
.++|.|....|+|+...|-.+|-++|+.+++.+=+.+.+.+ ...+.+..... ......+...|..+..
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~f-tm~~lV~~~~~-~~d~~~lr~~l~~~~~ 70 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFF-TMIMLVDISKE-VVDFAALRDELAAEGK 70 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhc-eeeeEEcCChH-hccHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999977777744 34455554432 3455566666655543
No 104
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=71.76 E-value=22 Score=26.36 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=36.0
Q ss_pred EEEEEec---CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 296 LIRIHCE---KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 296 lIkI~c~---kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
.|.|... ..+|++.+++.+|.+.|+.|+..+. ... .+.++ +++. ..+++++.|+..|
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~---Se~--~is~~--v~~~---~~~~av~~Lh~~f 62 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD---SHT--TISCL--VSED---DVKEAVNALHEAF 62 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc---Ccc--EEEEE--EcHH---HHHHHHHHHHHHh
Confidence 3445443 5689999999999999999974432 121 22222 2222 3456777888776
No 105
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.40 E-value=30 Score=27.38 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=39.1
Q ss_pred EEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 295 VLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 295 vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.++.|.-+.+||-|.+++++|- +..|........+...-.+.+..+..++ .-.++++.+.|+.
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~-~~~~~~i~~~L~~ 64 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG-AEELAELLEDLKS 64 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc-HHHHHHHHHHHHH
Confidence 4678999999999999999998 6666655444333222234455565541 1134555555543
No 106
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=70.00 E-value=31 Score=32.00 Aligned_cols=66 Identities=14% Similarity=0.226 Sum_probs=47.4
Q ss_pred EEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeC-----CcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 295 VLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFG-----NSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 295 vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g-----~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
+.|.|....++|++.+|-+.|-++|+.|.+-+.-+.+ ...+...+.+.+..+ +.+++|...|...-
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~--~~~~~L~~~l~~l~ 166 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS--QDAANIEQAFKALC 166 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC--CCHHHHHHHHHHHH
Confidence 5778899999999999999999999999766655544 235555566666665 45666666555443
No 107
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=69.93 E-value=31 Score=41.57 Aligned_cols=73 Identities=14% Similarity=0.096 Sum_probs=56.9
Q ss_pred CeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEe----CCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHHhh
Q 037441 293 KDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPF----GNSTLDITIIALKNAEFCTTMKDLVKDIRLAFLKL 365 (366)
Q Consensus 293 ~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~----g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~~~ 365 (366)
+.+.++|-...++..|++||-.||++||.|+...-..+ |..+..+.+..+...+......++.+.|..+|...
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v 564 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAV 564 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHH
Confidence 46888999889999999999999999999997654332 23344446677777776678889999999888753
No 108
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=69.77 E-value=29 Score=24.27 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=36.8
Q ss_pred EEEEEec---CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 296 LIRIHCE---KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 296 lIkI~c~---kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
+|.|.+. ..+|.+.+++++|.+.++.|...+.+. .+ ..++++.... ..+++.+.|+..|
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~-~~--~~i~~~v~~~-----~~~~~~~~l~~~~ 63 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS-SE--VNISFVVDED-----DADKAVKALHEEF 63 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC-Cc--eeEEEEEeHH-----HHHHHHHHHHHHH
Confidence 4566543 567899999999999999997665432 22 2333332221 2355566666655
No 109
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=68.80 E-value=35 Score=25.80 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=38.0
Q ss_pred CCCCcHHHHHHHHHhCCCeEEEEEeEEe-CCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 303 KQKGLLPKLISQLEMLHLSITNTSVLPF-GNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 303 kr~glL~~IL~aLe~lgL~Vv~asvs~~-g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
+++|.|.+|+..+..-|..|-+-++... .+....++|++.-.+. .++.|++.|..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~---~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDR---EIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CC---HHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCch---hHHHHHHHHhc
Confidence 4689999999999999999987777663 3345566777665432 56666666643
No 110
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=68.61 E-value=39 Score=24.38 Aligned_cols=59 Identities=10% Similarity=0.226 Sum_probs=36.5
Q ss_pred EEEEEec---CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 296 LIRIHCE---KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 296 lIkI~c~---kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
+|.|.+. ..+|++.+|+++|.+.|+.|.-.+... .+ ..++++..- . ..+++++.|+.+|
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~-s~--~~is~~v~~--~---~~~~~~~~lh~~~ 64 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS-SE--RNISAVIDE--D---DATKALRAVHERF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC-cc--cEEEEEEeH--H---HHHHHHHHHHHHH
Confidence 4555553 457899999999999999995544322 22 222333222 1 3456677777766
No 111
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=68.07 E-value=22 Score=26.24 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=37.6
Q ss_pred EEEecCCCCcHHHHHHHHHhCCCeEEEEEeEE--eCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 298 RIHCEKQKGLLPKLISQLEMLHLSITNTSVLP--FGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 298 kI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~--~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
-|....++|.+.+|.+.|.+.|+.+.+..+.. -++... +.+ .++.. ..+++.+.|+.
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~-~~i--~v~~~---~~~~~~~~l~~ 61 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEAL-MVL--SVDEP---VPDEVLEELRA 61 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEE-EEE--EeCCC---CCHHHHHHHHc
Confidence 46788999999999999999999997765544 234332 233 33332 23466666553
No 112
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=66.95 E-value=35 Score=34.38 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=47.8
Q ss_pred eCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEe----CCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 291 SDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPF----GNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 291 ~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~----g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.++.+.|.|.-+.++|.|.++++.|-+.|.+|++...... ......++|..+..+ .-..++|++.|+.
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~--~~~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG--KEHLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 4566788999999999999999999999999987765421 112333556655543 2345567776654
No 113
>PRK06382 threonine dehydratase; Provisional
Probab=65.56 E-value=30 Score=35.39 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=46.1
Q ss_pred eCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeE----EeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 291 SDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVL----PFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 291 ~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs----~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.++.+.|.|.-+.++|.|.+|++.|.+.+++|++..+. ........++|..+..+. ...++|.+.|+.
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~--~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQ--DHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 35667888999999999999999999999999877654 232323334555554422 233466666654
No 114
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=64.84 E-value=34 Score=31.41 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=45.8
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEE--eCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLP--FGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~--~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
.|.|..++++|+|.+|...|-..|+.+.+-++.+ -.+ .-.++|+..-++ .. ++.|.+.|....
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~-~sr~TIvv~~~~--~~-ieqL~kQL~KLi 68 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKG-ISRITMVVPGDD--RT-IEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCC-ccEEEEEEECCH--HH-HHHHHHHHHHHh
Confidence 5788899999999999999999999998887755 333 325567655322 22 677777776544
No 115
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=60.37 E-value=60 Score=36.07 Aligned_cols=70 Identities=6% Similarity=0.048 Sum_probs=50.7
Q ss_pred CCeEEEEEEe-cCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 292 DKDVLIRIHC-EKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 292 ~~~vlIkI~c-~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
+.+..+.|.. +.++|++.++..+|--+++.|.+|++.+ ++... ..+.+.-.-+.......+.+.++.++.
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ 614 (693)
T PRK00227 544 EEDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWS-AEFDVRANGPQDFDPQEFLQAYKSGVY 614 (693)
T ss_pred ccCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceE-EEEEEecCCCCCCChHHHHHHHHHhhc
Confidence 3334455555 9999999999999999999999999998 55544 234444444444577788888877753
No 116
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=60.13 E-value=34 Score=37.95 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=50.7
Q ss_pred eEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 294 ~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
.+-|.|...+++|+|.+|+++|-+.+..|+..+....++.+..+.|..++.+-. .+..|+.+|+
T Consensus 627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n~~--~L~~i~~~l~ 690 (701)
T COG0317 627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKNLN--HLGRVLARLK 690 (701)
T ss_pred EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECcHH--HHHHHHHHHh
Confidence 567888999999999999999999999999999888777777777777776653 3334555444
No 117
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=59.81 E-value=61 Score=27.13 Aligned_cols=64 Identities=9% Similarity=0.313 Sum_probs=45.9
Q ss_pred CeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCc-EEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 293 KDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNS-TLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 293 ~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~-~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
+...|.+..++++|+|.+|...+-.-|..|-+-++...++. +-.+||++. ++ -.++.|++.|..
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~---~~i~Qi~kQL~K 71 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DD---QRLEQMISQIEK 71 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-Cc---hHHHHHHHHHhC
Confidence 44578899999999999999999999999977777665552 223466654 32 266666666653
No 118
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=58.97 E-value=37 Score=35.66 Aligned_cols=67 Identities=7% Similarity=0.147 Sum_probs=46.8
Q ss_pred EEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 037441 295 VLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLA 361 (366)
Q Consensus 295 vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~a 361 (366)
..|-+...+++|.|.+||..+...|+.+.+-..-+.....-.|.|...+++...-.++++.+.|++.
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~ 83 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQK 83 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHh
Confidence 3344555778999999999999999999888776765555556666666543223456666666653
No 119
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=57.34 E-value=39 Score=26.22 Aligned_cols=46 Identities=24% Similarity=0.358 Sum_probs=34.8
Q ss_pred CCeEEEEEeCCeEEEEEEecCCCC------cHHHHHHHHHhCCCeEEEEEeE
Q 037441 283 LPEIEARVSDKDVLIRIHCEKQKG------LLPKLISQLEMLHLSITNTSVL 328 (366)
Q Consensus 283 ~p~VeVrv~~~~vlIkI~c~kr~g------lL~~IL~aLe~lgL~Vv~asvs 328 (366)
...|.+++.++.+-|.|.+++..- -+..+.++|...|+.|.+.+|.
T Consensus 26 ~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~ 77 (85)
T PF02120_consen 26 SVEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVS 77 (85)
T ss_dssp -EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEE
T ss_pred cEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEE
Confidence 456677888999999999987642 4788999999999999988774
No 120
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=56.72 E-value=86 Score=30.08 Aligned_cols=65 Identities=11% Similarity=0.308 Sum_probs=45.0
Q ss_pred CeEEEEEEecCCCC--cHHHHHHHHHhCCCeEEEEEeEEeCC-c--EEEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 293 KDVLIRIHCEKQKG--LLPKLISQLEMLHLSITNTSVLPFGN-S--TLDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 293 ~~vlIkI~c~kr~g--lL~~IL~aLe~lgL~Vv~asvs~~g~-~--~l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
....++|.|.+..+ +...+++.|++.++.+.+.++..+++ . .+..++.+... ....+++++..|.
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~--~~~~le~iv~~L~ 210 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHAD--YRKTRELIISRIG 210 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCC--chhhHHHHHHHHh
Confidence 35678899988765 57888899999999999999877642 3 23334444333 3357777777664
No 121
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.81 E-value=2.4e+02 Score=28.83 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=16.5
Q ss_pred cccccccchhhccchhhhHHHHhCCCcc
Q 037441 20 IHQCHMESVADLFSSKQDITAALGGNLK 47 (366)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 47 (366)
.|.|.--+-+--- |-|+|-++||++.+
T Consensus 114 Lh~W~~pssdLv~-Liq~l~a~f~~~pP 140 (365)
T KOG2391|consen 114 LHNWDPPSSDLVG-LIQELIAAFSEDPP 140 (365)
T ss_pred hccCCCccchHHH-HHHHHHHHhcCCCc
Confidence 4777544433222 33888889998765
No 122
>PRK11899 prephenate dehydratase; Provisional
Probab=54.84 E-value=77 Score=31.16 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=42.5
Q ss_pred EEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCC
Q 037441 295 VLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAE 346 (366)
Q Consensus 295 vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~ 346 (366)
..|-+..++++|.|.++|.++-..|+....-..-+..+....|.+...+++.
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~ 246 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH 246 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC
Confidence 3344455789999999999999999999888888888877788777777764
No 123
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=54.73 E-value=4.7 Score=44.22 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=52.9
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHHHHHhhcCCCC-----CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037441 178 TRTPALAQDHIMAERKRREKLSQRFIALSAILPGL-----KKMDKASVLGDAIRYVKELQERVKVLEEQTKKR 245 (366)
Q Consensus 178 ~r~~~~~~~h~~~ER~RR~kln~~~~~LrslvP~~-----~K~dKasiL~~AI~YIk~Lq~~v~~L~~~~~~~ 245 (366)
.+.......|+.+|||||-.+-++|..|-+|.|-. .+..+++||. +.|+.+++.-+.+.+..+.+
T Consensus 782 p~n~~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~k 851 (856)
T KOG3582|consen 782 PFNGMVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEGK 851 (856)
T ss_pred cccceeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhhh
Confidence 34555677899999999999999999999999943 6789999999 78888888888777755443
No 124
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=53.74 E-value=48 Score=24.96 Aligned_cols=51 Identities=12% Similarity=0.251 Sum_probs=34.2
Q ss_pred CCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 304 QKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 304 r~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
++|++.+++++|.+.|++|...+.+ .+-..+++. ++++ ..+++++.|+..|
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~---~s~~~is~~--V~~~---~~~~av~~Lh~~f 64 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQS---MRNVDVQFV--VDRD---DYDNAIKALHAAL 64 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEec---CCeeEEEEE--EEHH---HHHHHHHHHHHHH
Confidence 5789999999999999999665553 222222222 2222 4577888888776
No 125
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.46 E-value=57 Score=24.25 Aligned_cols=50 Identities=8% Similarity=0.202 Sum_probs=33.3
Q ss_pred CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 303 KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 303 kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
..+|++.+++++|.+.++.++.... +-..++++. ++. ..+++++.|+..|
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~~~-----s~~~is~vv--~~~---d~~~av~~LH~~f 61 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQAA-----NDLNLTFVV--DED---QADGLCARLHFQL 61 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEEeC-----CCCeEEEEE--eHH---HHHHHHHHHHHHH
Confidence 5689999999999998877754433 222333332 222 4578888888876
No 126
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=53.11 E-value=61 Score=23.42 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.9
Q ss_pred CCCCcHHHHHHHHHhCCCeEEEEE
Q 037441 303 KQKGLLPKLISQLEMLHLSITNTS 326 (366)
Q Consensus 303 kr~glL~~IL~aLe~lgL~Vv~as 326 (366)
.++|...+|+++|++.|+.|..-.
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~ 35 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIP 35 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEe
Confidence 557899999999999999997664
No 127
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.14 E-value=88 Score=22.62 Aligned_cols=59 Identities=10% Similarity=0.169 Sum_probs=34.6
Q ss_pred EEEEEec---CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 296 LIRIHCE---KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 296 lIkI~c~---kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
+|.|... .++|.+.+++++|.+.|++|.-.+..+ .+.. +.++. ++. ..+++++.|+..|
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~-s~~~--isf~v--~~~---~~~~a~~~lh~~~ 64 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA-SEIN--ISCVI--DEK---DAVKALNIIHTNL 64 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC-ccce--EEEEE--eHH---HHHHHHHHHHHHH
Confidence 3444443 457899999999999999995444322 2222 22222 221 2455666676655
No 128
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=51.94 E-value=48 Score=31.78 Aligned_cols=54 Identities=17% Similarity=0.362 Sum_probs=41.6
Q ss_pred eEEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 294 ~vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
++-|.+||.+..|+ +...+.+++ .|.+++++++..+|++. .+...++|+..|+.
T Consensus 189 ~i~l~~H~Hn~~GlA~An~laAi~-aG~~~iD~s~~GlG~~a------------GN~~tE~lv~~L~~ 243 (268)
T cd07940 189 KVPISVHCHNDLGLAVANSLAAVE-AGARQVECTINGIGERA------------GNAALEEVVMALKT 243 (268)
T ss_pred ceeEEEEecCCcchHHHHHHHHHH-hCCCEEEEEeecccccc------------ccccHHHHHHHHHh
Confidence 36788999999996 788899996 59999999999888532 34566666666643
No 129
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=50.77 E-value=95 Score=23.73 Aligned_cols=31 Identities=26% Similarity=0.331 Sum_probs=24.1
Q ss_pred EEEEEe---cCCCCcHHHHHHHHHhCCCeEEEEE
Q 037441 296 LIRIHC---EKQKGLLPKLISQLEMLHLSITNTS 326 (366)
Q Consensus 296 lIkI~c---~kr~glL~~IL~aLe~lgL~Vv~as 326 (366)
+|.|.+ ...+|++.+|+.+|.+.|+.|....
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence 455533 4558899999999999999996654
No 130
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.52 E-value=52 Score=24.49 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=33.6
Q ss_pred CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 303 KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 303 kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
+.+|++.+++.+|.+.|+.|.-.+..+-+. .++++. ++. ..+.+++.|+..|
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~---sis~~v--~~~---~~~~av~~Lh~~f 63 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKV---NISLIV--NDS---EAEGCVQALHKSF 63 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccc---eEEEEE--eHH---HHHHHHHHHHHHH
Confidence 457899999999999999996555422222 222332 222 3466777887776
No 131
>PRK11898 prephenate dehydratase; Provisional
Probab=50.16 E-value=75 Score=31.12 Aligned_cols=66 Identities=11% Similarity=0.097 Sum_probs=45.2
Q ss_pred EEEEEEecC-CCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCccc-CHHHHHHHHHH
Q 037441 295 VLIRIHCEK-QKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCT-TMKDLVKDIRL 360 (366)
Q Consensus 295 vlIkI~c~k-r~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~l-sv~dLv~~L~~ 360 (366)
..|-+..++ ++|.|.++|..+...|+.+.+-..-+..++.-.|.|...++....- .++++...|++
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~ 264 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEA 264 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHH
Confidence 344455555 4999999999999999999988887877665566666666554211 34455555544
No 132
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.89 E-value=98 Score=22.19 Aligned_cols=60 Identities=22% Similarity=0.221 Sum_probs=36.4
Q ss_pred EEEEEec---CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 296 LIRIHCE---KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 296 lIkI~c~---kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
+|.|.+. +.++.+.+++.+|.+.|+.|.-.+... .+ ..++++.. .. ..+++.+.|++.|-
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~-s~--~~isf~v~--~~---d~~~~~~~lh~~~~ 65 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS-SE--ISIMIGVH--NE---DADKAVKAIYEEFF 65 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC-cc--cEEEEEEe--HH---HHHHHHHHHHHHHh
Confidence 4555553 567899999999999999995444322 11 22233322 21 34566777777663
No 133
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.90 E-value=91 Score=21.94 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=34.2
Q ss_pred EEEEe---cCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 297 IRIHC---EKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 297 IkI~c---~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
|.|.+ .+.+|.+.+++.+|.+.++.|.-.+.+ +. .++++..- -..+++++.|+..|
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s--~~---~is~~v~~-----~~~~~~~~~l~~~l 61 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMISTS--EI---KISCLVDE-----DDAEKAVRALHEAF 61 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEcc--CC---eEEEEEeH-----HHHHHHHHHHHHHh
Confidence 45543 245789999999999999999655532 22 22222211 13455666777665
No 134
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=47.64 E-value=10 Score=34.31 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC--CCCCcchHHHHHHHHHHHH
Q 037441 190 AERKRREKLSQRFIALSAILPGL--KKMDKASVLGDAIRYVKEL 231 (366)
Q Consensus 190 ~ER~RR~kln~~~~~LrslvP~~--~K~dKasiL~~AI~YIk~L 231 (366)
.||.|..++++.+.-|+.|+|+. .++.+.--|.-+.+||..|
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~ 72 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSL 72 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhH
Confidence 68999999999999999999975 2322222244444444443
No 135
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=46.35 E-value=59 Score=31.10 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=33.6
Q ss_pred EEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCc
Q 037441 295 VLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNS 333 (366)
Q Consensus 295 vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~ 333 (366)
+.|.+||.+..|+ +...+.+++ .|.+++++++..+|++
T Consensus 186 ~~l~~H~Hn~~GlA~AN~laAi~-aGa~~vd~s~~GlG~~ 224 (263)
T cd07943 186 TPVGFHGHNNLGLAVANSLAAVE-AGATRIDGSLAGLGAG 224 (263)
T ss_pred ceEEEEecCCcchHHHHHHHHHH-hCCCEEEeecccccCC
Confidence 4688999999996 788999996 6999999999999987
No 136
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.70 E-value=1.3e+02 Score=22.00 Aligned_cols=57 Identities=14% Similarity=0.339 Sum_probs=32.9
Q ss_pred EEEEEec---CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 296 LIRIHCE---KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 296 lIkI~c~---kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
+|.|.+. +.+|++.+++++|...++.+++- |.+-..++++. ... ..+.+++.|+..|
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~~i~~-----~~s~~~is~~V--~~~---~~~~a~~~Lh~~f 62 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVRMICY-----GASNHNLCFLV--KEE---DKDEVVQRLHSRL 62 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeEEEEE-----ecCccEEEEEE--eHH---HHHHHHHHHHHHH
Confidence 4555553 56899999999997655544332 22322332332 222 3567777777765
No 137
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.64 E-value=1.6e+02 Score=23.27 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=43.0
Q ss_pred EEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 295 VLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 295 vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
+++.|.-+.++|-|.+.++.|- -+-+|..-+.--.|+..-.+.+-.++.+. ..++|.+.|+.
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~-p~~~ITeF~YR~~~~~~a~vlvGi~~~~~---~~~~l~~~l~~ 63 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELL-PKWNITLFHYRNQGSDYGRVLVGIQVPDA---DLDELKERLDA 63 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC-CCCeEeEEEEecCCCCceeEEEEEEeChH---HHHHHHHHHHH
Confidence 5778899999999999999993 26788777765555443334455555533 66677777664
No 138
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=43.14 E-value=72 Score=33.80 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=43.6
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEE-EEEEEEeCCCcccCHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLD-ITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~-~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
-|-+...+++|.|.++|..++..|+.+.+-..-+..+.... |.|...++... -.++++.+.|++
T Consensus 33 SLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~-~~l~~aL~~Lk~ 97 (464)
T TIGR01270 33 SIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFH-YGLQEAMDLLKS 97 (464)
T ss_pred EEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCH-HHHHHHHHHHHH
Confidence 34445577899999999999999999998887766555444 44555544332 245566666654
No 139
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=43.00 E-value=61 Score=31.40 Aligned_cols=38 Identities=21% Similarity=0.471 Sum_probs=33.6
Q ss_pred EEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCc
Q 037441 295 VLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNS 333 (366)
Q Consensus 295 vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~ 333 (366)
+-|.+||.+.-|+ +...+.+++ .|.+.+++++..+|++
T Consensus 193 ~~l~~H~Hnd~GlA~aN~laA~~-aGa~~vd~sv~GlG~~ 231 (275)
T cd07937 193 LPIHLHTHDTSGLAVATYLAAAE-AGVDIVDTAISPLSGG 231 (275)
T ss_pred CeEEEEecCCCChHHHHHHHHHH-hCCCEEEEecccccCC
Confidence 5688999999996 788888996 6999999999999987
No 140
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.75 E-value=1.6e+02 Score=22.77 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.3
Q ss_pred cCCCCcHHHHHHHHHhCCCeEEEEE
Q 037441 302 EKQKGLLPKLISQLEMLHLSITNTS 326 (366)
Q Consensus 302 ~kr~glL~~IL~aLe~lgL~Vv~as 326 (366)
...+|.+.+|+.+|.+.|+.|---+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~VDmI~ 36 (75)
T cd04932 12 LHAQGFLAKVFGILAKHNISVDLIT 36 (75)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEe
Confidence 5668999999999999999986553
No 141
>PRK08526 threonine dehydratase; Provisional
Probab=41.47 E-value=98 Score=31.86 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=48.2
Q ss_pred eCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCc----EEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 291 SDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNS----TLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 291 ~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~----~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.|+.+.+.|.-+.++|.|.+++..|-+.+.+|+.......... -..+.|..+..+. -..++|.+.|+.
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGK--EHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 4677899999999999999999999999999998887554333 1224455555543 244566665543
No 142
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=39.95 E-value=31 Score=23.20 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 037441 191 ERKRREKLSQRFIALSA 207 (366)
Q Consensus 191 ER~RR~kln~~~~~Lrs 207 (366)
=|+||+.|+.++..||.
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 37899999999999985
No 143
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=39.80 E-value=71 Score=30.88 Aligned_cols=54 Identities=19% Similarity=0.288 Sum_probs=41.9
Q ss_pred eEEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 294 ~vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
++-|.+||.+.-|+ +...+.+++ .|.+++++++..+|++. .+...|+++-.|+.
T Consensus 183 ~~~i~~H~Hn~~Gla~AN~laA~~-aGa~~vd~s~~G~G~~a------------GN~~~E~~v~~l~~ 237 (266)
T cd07944 183 DIKLGFHAHNNLQLALANTLEAIE-LGVEIIDATVYGMGRGA------------GNLPTELLLDYLNN 237 (266)
T ss_pred CceEEEEeCCCccHHHHHHHHHHH-cCCCEEEEecccCCCCc------------CcHHHHHHHHHHHH
Confidence 47789999999996 788888885 89999999999999842 23456666655554
No 144
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=39.33 E-value=85 Score=29.93 Aligned_cols=54 Identities=11% Similarity=0.236 Sum_probs=42.0
Q ss_pred EEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 037441 295 VLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLA 361 (366)
Q Consensus 295 vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~a 361 (366)
+-|.+||.+..|+ +...+.+++ .|.+++++++..+|++ ..+...++|+..|+..
T Consensus 183 ~~l~~H~Hn~~Gla~An~laAi~-aG~~~vd~s~~G~G~~------------aGN~~tE~lv~~l~~~ 237 (259)
T cd07939 183 LPLEFHAHNDLGLATANTLAAVR-AGATHVSVTVNGLGER------------AGNAALEEVVMALKHL 237 (259)
T ss_pred CeEEEEecCCCChHHHHHHHHHH-hCCCEEEEeccccccc------------ccCcCHHHHHHHHHHh
Confidence 5678999999996 788888884 8999999999888853 2346777777766643
No 145
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.55 E-value=92 Score=23.44 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 037441 188 IMAERKRREKLSQRFIALSAILPGLKKMDKASVLGDAIRYVKELQERVKVLE 239 (366)
Q Consensus 188 ~~~ER~RR~kln~~~~~LrslvP~~~K~dKasiL~~AI~YIk~Lq~~v~~L~ 239 (366)
+..=|.-|=.+...+..+..++ ..++ .++|.+||+.+-+.++.+.
T Consensus 13 ~~~lR~~RHD~~NhLqvI~gll-qlg~------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 13 IDSLRAQRHDFLNHLQVIYGLL-QLGK------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HTT-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHH-HCCC------HHHHHHHHHHHHHHHHHHH
Confidence 3344777888999999999998 3333 6789999999999888774
No 146
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=37.93 E-value=1.9e+02 Score=22.35 Aligned_cols=31 Identities=29% Similarity=0.511 Sum_probs=23.4
Q ss_pred EEEEEe---cCCCCcHHHHHHHHHhCCCeEEEEE
Q 037441 296 LIRIHC---EKQKGLLPKLISQLEMLHLSITNTS 326 (366)
Q Consensus 296 lIkI~c---~kr~glL~~IL~aLe~lgL~Vv~as 326 (366)
+|.|.. ...+|.+.+|+++|.+.|+.|-.-.
T Consensus 3 ~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~ 36 (73)
T cd04934 3 VINIHSNKKSLSHGFLARIFAILDKYRLSVDLIS 36 (73)
T ss_pred EEEEEcccCccccCHHHHHHHHHHHcCCcEEEEE
Confidence 344444 3458999999999999999986554
No 147
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=36.85 E-value=89 Score=29.18 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=42.1
Q ss_pred EEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 295 VLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 295 vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
+-|.+||.+..|+ +...+.+++ .|.+.+++++..+|++ ..+...++|+..|+.
T Consensus 191 ~~~~~H~Hn~~gla~an~laA~~-aG~~~id~s~~G~G~~------------~Gn~~~e~~~~~l~~ 244 (265)
T cd03174 191 VPLGLHTHNTLGLAVANSLAALE-AGADRVDGSVNGLGER------------AGNAATEDLVAALEG 244 (265)
T ss_pred CeEEEEeCCCCChHHHHHHHHHH-cCCCEEEecccccccc------------ccCccHHHHHHHHHh
Confidence 7788999999996 788888885 8999999999888843 234677777777664
No 148
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=36.18 E-value=2.1e+02 Score=28.37 Aligned_cols=65 Identities=9% Similarity=0.150 Sum_probs=47.5
Q ss_pred EEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCccc-CHHHHHHHHH
Q 037441 295 VLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCT-TMKDLVKDIR 359 (366)
Q Consensus 295 vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~l-sv~dLv~~L~ 359 (366)
..|-+.-++++|.|.++|..|-..|++...-..=+..++.-.|.+...++++..- .+++..+.|+
T Consensus 195 Tsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~ 260 (279)
T COG0077 195 TSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELK 260 (279)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHH
Confidence 3444555699999999999999999999888888888877778777777765432 3334444443
No 149
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.65 E-value=1.6e+02 Score=20.92 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=35.7
Q ss_pred EEEEEec---CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 296 LIRIHCE---KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 296 lIkI~c~---kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
+|.|.+. +.++++.+++++|.+.|+.|.-.+...-+ ..++++..-. ..+++.+.|+..|
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~---~~isf~i~~~-----~~~~~~~~Lh~~~ 64 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE---YNISFVVAED-----DGWAAVKAVHDEF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc---ceEEEEEeHH-----HHHHHHHHHHHHh
Confidence 4555553 45789999999999999999544332212 2233333221 3456667777766
No 150
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=35.37 E-value=2.1e+02 Score=29.47 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=40.8
Q ss_pred EEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCC
Q 037441 299 IHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAE 346 (366)
Q Consensus 299 I~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~ 346 (366)
+.-++++|.|.++|..|-..|+....-..-+..+....|.|...+.+.
T Consensus 302 ~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~ 349 (386)
T PRK10622 302 MATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN 349 (386)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC
Confidence 444689999999999999999999888888888887888888887764
No 151
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=34.33 E-value=1.3e+02 Score=26.46 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=33.2
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCc
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNS 333 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~ 333 (366)
.|.|..++++|.|..++..|-+.|+.+---++.-.|++
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dF 42 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDF 42 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCc
Confidence 57889999999999999999999999988777666654
No 152
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=34.26 E-value=1.3e+02 Score=20.16 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.3
Q ss_pred CCCcHHHHHHHHHhCCCeEEEEEe
Q 037441 304 QKGLLPKLISQLEMLHLSITNTSV 327 (366)
Q Consensus 304 r~glL~~IL~aLe~lgL~Vv~asv 327 (366)
.+|.+.+++++|.+.++.|.-.+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEc
Confidence 578999999999999999965543
No 153
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=33.81 E-value=9.6 Score=41.92 Aligned_cols=61 Identities=23% Similarity=0.331 Sum_probs=50.9
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHhhcCCCC-----CCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 037441 182 ALAQDHIMAERKRREKLSQRFIALSAILPGL-----KKMDKASVLGDAIRYVKELQERVKVLEEQT 242 (366)
Q Consensus 182 ~~~~~h~~~ER~RR~kln~~~~~LrslvP~~-----~K~dKasiL~~AI~YIk~Lq~~v~~L~~~~ 242 (366)
.....|+-+|.+||..+.-.|..|-+++-+. .|+.++.-+...+.||.-++.+...+.++.
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~ 715 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEA 715 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhh
Confidence 4467899999999999999999999998754 467777779999999999988877776643
No 154
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=33.81 E-value=1.1e+02 Score=30.07 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=40.9
Q ss_pred EEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 295 VLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 295 vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
+-|.+||.+..|+ +...+.+++. |.+.+++++..+|++ ..++..++|+-.|+.
T Consensus 204 ~~l~~H~Hn~~Gla~AN~laA~~a-G~~~vd~sv~GlGe~------------aGN~~tE~lv~~l~~ 257 (279)
T cd07947 204 ENLEWHGHNDFYKAVANAVAAWLY-GASWVNCTLLGIGER------------TGNCPLEAMVIEYAQ 257 (279)
T ss_pred ceEEEEecCCCChHHHHHHHHHHh-CCCEEEEeccccccc------------ccchhHHHHHHHHHH
Confidence 4578999999996 7888888875 999999999888843 234567777766654
No 155
>PRK03094 hypothetical protein; Provisional
Probab=33.56 E-value=93 Score=25.23 Aligned_cols=55 Identities=7% Similarity=0.093 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCeEEEEEe-----------EE-eCCcEEEE---EEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 308 LPKLISQLEMLHLSITNTSV-----------LP-FGNSTLDI---TIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 308 L~~IL~aLe~lgL~Vv~asv-----------s~-~g~~~l~~---tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
|.+|-++|++.|.+|++-.- .+ .+..++-+ ...+-+=+...+|++||.+.|..-|
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~A~G~TaeEI~~~ve~r~ 79 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITASGLTADEICQQVESRL 79 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccccccCCcEEEcCCCCHHHHHHHHHHhh
Confidence 88999999999999975431 11 11111110 0001111344789999999998654
No 156
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=31.44 E-value=1.5e+02 Score=27.43 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=44.9
Q ss_pred CCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEE--EEeEEe---CCcEEEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 292 DKDVLIRIHCEKQKGLLPKLISQLEMLHLSITN--TSVLPF---GNSTLDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 292 ~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~--asvs~~---g~~~l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
+.-+.+++...+|+|++.++.+.|..+|+.+-+ +...+. +...||+.|.+...-+ +++..|...+.
T Consensus 90 ~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~--~~i~~l~~~f~ 160 (176)
T COG2716 90 PAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN--LSISALRDAFE 160 (176)
T ss_pred CceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc--CcHHHHHHHHH
Confidence 344677888899999999999999999999854 443332 2245665666555554 56666655543
No 157
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=31.26 E-value=1.4e+02 Score=30.10 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=33.0
Q ss_pred EEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCc
Q 037441 295 VLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNS 333 (366)
Q Consensus 295 vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~ 333 (366)
+-|.+||.+.-|+ +...+.+++. |.+.+++++..+|.+
T Consensus 185 ~~l~~H~Hnd~GlA~AN~laA~~a-Ga~~vd~s~~GlGer 223 (363)
T TIGR02090 185 LPISVHCHNDFGLATANSIAGVKA-GAEQVHVTVNGIGER 223 (363)
T ss_pred ceEEEEecCCCChHHHHHHHHHHC-CCCEEEEEeeccccc
Confidence 6689999999996 7899999975 999999999888864
No 158
>PRK09224 threonine dehydratase; Reviewed
Probab=31.19 E-value=2.8e+02 Score=29.48 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=43.6
Q ss_pred eCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 291 SDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 291 ~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.++.+++.|.-+.++|-|.++++.|- +..|+..+.-..+...-.+.|..+..+.. -..++|.+.|+.
T Consensus 325 ~~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~-~~~~~i~~~L~~ 391 (504)
T PRK09224 325 EQREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQ-EERAEIIAQLRA 391 (504)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChh-hHHHHHHHHHHH
Confidence 35788999999999999999999998 45665555433333333345555655431 125566666654
No 159
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=31.16 E-value=98 Score=25.02 Aligned_cols=56 Identities=7% Similarity=0.021 Sum_probs=33.7
Q ss_pred cHHHHHHHHHhCCCeEEEEEeEE------------eCCcEEE---EEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 307 LLPKLISQLEMLHLSITNTSVLP------------FGNSTLD---ITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 307 lL~~IL~aLe~lgL~Vv~asvs~------------~g~~~l~---~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
-|.+|-++|++.|.+|+.-.--. .+..++. ....+-+=+...+|++||++.|+.-|
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINASGLTAEEIVQEVEERL 79 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccccCceEEecCCCCHHHHHHHHHHhh
Confidence 38899999999999998643211 1111111 01111111344689999999998754
No 160
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=30.86 E-value=1.9e+02 Score=20.22 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=31.6
Q ss_pred CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 303 KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 303 kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
+.+|.+.+++.+|.+.++.|.-.+.+ +. .++++..- -..+++++.|+..|
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~s--~~---~is~~v~~-----~d~~~~~~~l~~~~ 61 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMISTS--EI---KISCLIDE-----DDAEKAVRALHEAF 61 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcc--Cc---eEEEEEeH-----HHHHHHHHHHHHHh
Confidence 45789999999999999999665532 22 22333222 13355566666655
No 161
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=30.67 E-value=2.8e+02 Score=28.46 Aligned_cols=68 Identities=12% Similarity=0.049 Sum_probs=45.5
Q ss_pred eCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEE-eCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 291 SDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLP-FGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 291 ~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~-~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.|+.+.+++.-+.+||-|.++++.+-..+.+|+....-. .+...-.+.|..+..+. --.++|.+.|++
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~--~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDK--EDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 467889999999999999999997777777888766542 23222234556666542 134555555543
No 162
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.36 E-value=1.7e+02 Score=20.05 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=21.8
Q ss_pred cCCCCcHHHHHHHHHhCCCeEEEEEe
Q 037441 302 EKQKGLLPKLISQLEMLHLSITNTSV 327 (366)
Q Consensus 302 ~kr~glL~~IL~aLe~lgL~Vv~asv 327 (366)
.+.+|.+.+++.+|.+.|+.|...+.
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~ 34 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQ 34 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence 56689999999999999999966544
No 163
>PHA02568 J baseplate assembly protein; Provisional
Probab=29.87 E-value=2.2e+02 Score=28.31 Aligned_cols=75 Identities=11% Similarity=0.072 Sum_probs=53.8
Q ss_pred eCCeEEEEEEecCCCC-----cHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHHhh
Q 037441 291 SDKDVLIRIHCEKQKG-----LLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFLKL 365 (366)
Q Consensus 291 ~~~~vlIkI~c~kr~g-----lL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~~~ 365 (366)
..+.|.|.|......| ++..|-+.|...++..+...|+..+-..+.|.|.+..--......+.+.+.++.+|..+
T Consensus 164 ~pGtV~V~il~~~~~G~ps~~Ll~~V~~~l~~e~vrPl~d~VtV~sa~~v~~~I~a~l~l~~g~~~~~v~~~a~~~l~~y 243 (300)
T PHA02568 164 APAEVVVTVLSREGNGTASEDLLAAVRAALNREDVRPVTDRVTVQSATIVPYQIRATLYLYPGPDSEVILAAAEARLQAY 243 (300)
T ss_pred CCCEEEEEEEcCCCCCCCCHHHHHHHHHHhcccccCCCCCEEEEECCEEEEEEEEEEEEEcCCCChHHHHHHHHHHHHHH
Confidence 3578888886654443 67788888887888888888988888888887777665433345677777777776543
No 164
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.63 E-value=2.8e+02 Score=21.87 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=23.8
Q ss_pred EEEEEe---cCCCCcHHHHHHHHHhCCCeEEEEE
Q 037441 296 LIRIHC---EKQKGLLPKLISQLEMLHLSITNTS 326 (366)
Q Consensus 296 lIkI~c---~kr~glL~~IL~aLe~lgL~Vv~as 326 (366)
+|.|.. ...+|.+.+|+++|++.|+.|---.
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~ 36 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVA 36 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEE
Confidence 455544 4568999999999999999985553
No 165
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.08 E-value=2.7e+02 Score=21.49 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.1
Q ss_pred cCCCCcHHHHHHHHHhCCCeEEEEE
Q 037441 302 EKQKGLLPKLISQLEMLHLSITNTS 326 (366)
Q Consensus 302 ~kr~glL~~IL~aLe~lgL~Vv~as 326 (366)
...+|++.+|+++|.+.|+.|-.-+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~ 36 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVS 36 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE
Confidence 4568999999999999999996554
No 166
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=28.75 E-value=2.9e+02 Score=29.39 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=44.5
Q ss_pred eCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 291 SDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 291 ~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.++++++.|.-+.++|-|.++++.|-. ..|+..+.-..+...-.+.+..+..+. -.+++|.+.|+.
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~~~--~~~~~l~~~L~~ 387 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLSNP--QERQEILARLND 387 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 368899999999999999999999987 355555544333333345566666532 245566666654
No 167
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=28.30 E-value=2.7e+02 Score=29.34 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=47.3
Q ss_pred EEEEeCCeEEEEEEec---CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 287 EARVSDKDVLIRIHCE---KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 287 eVrv~~~~vlIkI~c~---kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
++.+..+-.+|.|... ..+|+..+++.+|.+.++.++-.+.+ ++.|.+-+++. ..+..++.|+++|-
T Consensus 376 ~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issS-------e~~Is~vV~~~---~~~~av~~LH~~~~ 445 (447)
T COG0527 376 EVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSS-------EISISFVVDEK---DAEKAVRALHEAFF 445 (447)
T ss_pred eEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcC-------CceEEEEEccH---HHHHHHHHHHHHHh
Confidence 4555556667776653 55799999999999999999876621 23444445554 56788899998874
No 168
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=28.27 E-value=1.9e+02 Score=30.57 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=42.4
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEe--CC---cEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPF--GN---STLDITIIALKNAEFCTTMKDLVKDIRLA 361 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~--g~---~~l~~tI~aq~~~~~~lsv~dLv~~L~~a 361 (366)
.+.+...+ .|-|.++|..+++.++.|++-..-+. .. .-++++|-+.++. ..++++++.|++.
T Consensus 41 ~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~ 107 (457)
T TIGR01269 41 QFYIRTKE-ISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANE---INMSLLIESLRGN 107 (457)
T ss_pred EEEeccCc-chhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccH---hhHHHHHHHHHhh
Confidence 44444444 88999999999999999988765432 11 3455556665443 3578888888864
No 169
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.25 E-value=1.8e+02 Score=23.21 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=20.7
Q ss_pred cCCCCcHHHHHHHHHhCCCeEEEE
Q 037441 302 EKQKGLLPKLISQLEMLHLSITNT 325 (366)
Q Consensus 302 ~kr~glL~~IL~aLe~lgL~Vv~a 325 (366)
.+.-|.+.++|++||.+|+.+-+.
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh~ 35 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEHM 35 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEeee
Confidence 456799999999999999998664
No 170
>PLN02551 aspartokinase
Probab=28.23 E-value=2.6e+02 Score=30.00 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=43.2
Q ss_pred EeCCeEEEEEEec--CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 290 VSDKDVLIRIHCE--KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 290 v~~~~vlIkI~c~--kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
+..+-.+|.|... +.+|++.+++.+|.+.|+.|.-.+. |.+-..++++.. +. ..+..++.|++.|-
T Consensus 441 v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsq---gaSeinIS~vV~--~~---d~~~Av~aLH~~Ff 508 (521)
T PLN02551 441 LLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQ---GASKVNISLIVN--DD---EAEQCVRALHSAFF 508 (521)
T ss_pred EeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEe---cCCCcEEEEEEe--HH---HHHHHHHHHHHHHh
Confidence 3445556666654 4578999999999999999965554 222223333332 22 45778888988873
No 171
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=28.13 E-value=2.1e+02 Score=21.45 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=24.1
Q ss_pred EEEEEe---cCCCCcHHHHHHHHHhCCCeEEEEEe
Q 037441 296 LIRIHC---EKQKGLLPKLISQLEMLHLSITNTSV 327 (366)
Q Consensus 296 lIkI~c---~kr~glL~~IL~aLe~lgL~Vv~asv 327 (366)
+|.|.. .+.+|++.+++++|.+.++.|.-.+.
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~ 37 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQ 37 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEe
Confidence 455533 35678999999999999999965544
No 172
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=27.58 E-value=1.2e+02 Score=31.77 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=32.5
Q ss_pred EEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCc
Q 037441 295 VLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNS 333 (366)
Q Consensus 295 vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~ 333 (366)
+-|.+||.+..|+ +...+.++ +.|.+++++++.++|.+
T Consensus 198 ~pi~~H~Hnt~GlA~AN~laAi-eaGad~vD~sv~glg~g 236 (448)
T PRK12331 198 VPLEVHTHATSGIAEMTYLKAI-EAGADIIDTAISPFAGG 236 (448)
T ss_pred CeEEEEecCCCCcHHHHHHHHH-HcCCCEEEeeccccCCC
Confidence 5688999999996 67778887 57999999999988876
No 173
>PRK12483 threonine dehydratase; Reviewed
Probab=27.40 E-value=3.7e+02 Score=28.89 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=44.1
Q ss_pred eCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCH-HHHHHHHH
Q 037441 291 SDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTM-KDLVKDIR 359 (366)
Q Consensus 291 ~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv-~dLv~~L~ 359 (366)
.++.+.+.|.-+.++|.|.+++..|-.. +|+.......+..--.+.+..+..+.. .. ++|.+.|+
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~--~~~~~i~~~l~ 407 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRH--DPRAQLLASLR 407 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChh--hhHHHHHHHHH
Confidence 4678899999999999999999999877 776666554444434455555555431 22 45555554
No 174
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=27.39 E-value=1.6e+02 Score=28.37 Aligned_cols=39 Identities=18% Similarity=0.372 Sum_probs=33.8
Q ss_pred EEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCcE
Q 037441 295 VLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNST 334 (366)
Q Consensus 295 vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~~ 334 (366)
+-|.+||.+..|+ +...+.+++ .|.+.+++++..+|.+.
T Consensus 196 ~~l~~H~Hnd~Gla~An~laA~~-aGa~~id~s~~GlGera 235 (273)
T cd07941 196 VPLGIHAHNDSGLAVANSLAAVE-AGATQVQGTINGYGERC 235 (273)
T ss_pred CeeEEEecCCCCcHHHHHHHHHH-cCCCEEEEecccccccc
Confidence 6788999999996 889999997 69999999999888753
No 175
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=26.78 E-value=2.5e+02 Score=25.72 Aligned_cols=64 Identities=17% Similarity=0.316 Sum_probs=47.6
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCC-cEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGN-STLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~-~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
.+.+.-.+.+|.|..+...+-..|+.+-+-.+....+ ..-++||++.. ++ -.++.|++.|...+
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-~~--~~~EQi~kQL~kLi 70 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-DE--QVLEQIIKQLNKLI 70 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-Cc--chHHHHHHHHHhhc
Confidence 4567778999999999999999999997766665443 25567888776 32 36778877776653
No 176
>PRK08210 aspartate kinase I; Reviewed
Probab=26.65 E-value=2.3e+02 Score=28.85 Aligned_cols=66 Identities=20% Similarity=0.317 Sum_probs=43.1
Q ss_pred EEEEeCCeEEEEEEec---CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 287 EARVSDKDVLIRIHCE---KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 287 eVrv~~~~vlIkI~c~---kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
++.+.++-.+|.|... +.+|.+.+++.+|.+.++.|+.... .+.- ++++. ... ..+..++.|+.+|
T Consensus 332 ~v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~---s~~~--is~vv--~~~---~~~~a~~~Lh~~f 400 (403)
T PRK08210 332 KPSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSAD---SHTT--IWVLV--KEE---DMEKAVNALHDAF 400 (403)
T ss_pred cEEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEec---CCCE--EEEEE--cHH---HHHHHHHHHHHHh
Confidence 3455566677777664 5689999999999999999985332 2222 22222 222 3567778888776
No 177
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=26.65 E-value=1.3e+02 Score=31.89 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=32.9
Q ss_pred EEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCcE
Q 037441 295 VLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNST 334 (366)
Q Consensus 295 vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~~ 334 (366)
+-|.+||.+..|+ +...|.++ +.|.+++++++.++|.+.
T Consensus 197 vpI~~H~Hnt~GlA~AN~laAi-eaGad~vD~sv~~~g~ga 236 (467)
T PRK14041 197 VPVEVHSHCTTGLASLAYLAAV-EAGADMFDTAISPFSMGT 236 (467)
T ss_pred CceEEEecCCCCcHHHHHHHHH-HhCCCEEEeeccccCCCC
Confidence 5688999999996 67788887 579999999999888863
No 178
>PRK07431 aspartate kinase; Provisional
Probab=26.64 E-value=2.7e+02 Score=29.95 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=44.0
Q ss_pred EEeCCeEEEEEEec---CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 289 RVSDKDVLIRIHCE---KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 289 rv~~~~vlIkI~c~---kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
.+.++-..|.|... .++|++.+++.+|.+.|+.|+..+. +-.. |.+-++.. ..++.++.|+++|
T Consensus 514 ~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~-----S~~~--Is~vV~~~---~~~~av~~Lh~~f 580 (587)
T PRK07431 514 EDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIAT-----SEIR--TSCVVAED---DGVKALQAVHQAF 580 (587)
T ss_pred EEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeec-----cceE--EEEEEeHH---HHHHHHHHHHHHh
Confidence 34455556777664 6789999999999999999976652 2222 33333332 4678889998887
No 179
>PRK00341 hypothetical protein; Provisional
Probab=26.53 E-value=1.9e+02 Score=23.59 Aligned_cols=62 Identities=11% Similarity=0.172 Sum_probs=42.2
Q ss_pred EEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeE---EeCCcEEEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 295 VLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVL---PFGNSTLDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 295 vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs---~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
+-|+|.....+++...|+++++.+. ++-...+. .-+|+.+.++|...+.+.. .+++|.+.|.
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~--q~~~iy~~L~ 82 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDED--QLQDINSALR 82 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCHH--HHHHHHHHHh
Confidence 5678888899999999999998765 55433332 2466677778877776653 3445555554
No 180
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=26.35 E-value=83 Score=23.64 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=27.0
Q ss_pred CeEEEEEEec----CCCCcHHHHHHHHHhCCCeEEEEE
Q 037441 293 KDVLIRIHCE----KQKGLLPKLISQLEMLHLSITNTS 326 (366)
Q Consensus 293 ~~vlIkI~c~----kr~glL~~IL~aLe~lgL~Vv~as 326 (366)
+-..|+|.++ ..+|++.++..+|-+.|+.|...+
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 3356777776 468999999999999999998777
No 181
>PHA00198 nonstructural protein
Probab=25.16 E-value=27 Score=28.27 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=25.5
Q ss_pred hhhhhhhhhcCCCCC---------Cccccccccchhh--ccchhhhHHHHhCCC
Q 037441 3 ASSAKWLAELGMDEY---------NIIHQCHMESVAD--LFSSKQDITAALGGN 45 (366)
Q Consensus 3 ~s~~~~~~~~~m~~~---------~~~~~~~~~~~~~--~~~~~~~i~~~~~~~ 45 (366)
+...+||++|.||++ +.|.=||+..+|+ --|+|-|...+.+.+
T Consensus 26 gaAiR~F~d~v~D~~skn~~a~hPEDFDl~~iG~yDd~tG~f~PlD~p~~~~~~ 79 (86)
T PHA00198 26 GAAIRAFSDMVNDDPSKNQFAAHPEDFDLYEIGSYDDSTGTFIPLDVPKALGTG 79 (86)
T ss_pred HHHHHHHHHHHccCcchhhhhhCccccceEEecceeCCCCeEeecCcchhheee
Confidence 346899999999954 3344466666654 235555543344433
No 182
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.05 E-value=97 Score=24.65 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 037441 221 LGDAIRYVKELQERVKVLEEQTKKR 245 (366)
Q Consensus 221 L~~AI~YIk~Lq~~v~~L~~~~~~~ 245 (366)
+..||+-|.-||-.|++|++++...
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l 37 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 6789999999999999999876644
No 183
>PRK14633 hypothetical protein; Provisional
Probab=25.03 E-value=3.9e+02 Score=23.78 Aligned_cols=49 Identities=16% Similarity=0.066 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 310 KLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 310 ~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
.+-..++++|++++...+..-++.++.+.| +....++++|.. .+.++|.
T Consensus 9 lv~p~~~~~G~eL~dve~~~~~~~~lrV~I----D~~~Gv~lddC~-~vSr~i~ 57 (150)
T PRK14633 9 IVEPITADLGYILWGIEVVGSGKLTIRIFI----DHENGVSVDDCQ-IVSKEIS 57 (150)
T ss_pred HHHHHHHHCCCEEEEEEEEeCCCcEEEEEE----eCCCCCCHHHHH-HHHHHHH
Confidence 344567999999999999876665554333 223347887663 3444443
No 184
>PRK14645 hypothetical protein; Provisional
Probab=24.75 E-value=4.3e+02 Score=23.73 Aligned_cols=52 Identities=21% Similarity=0.138 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCCeEEEEEeEEeCC-cEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 309 PKLISQLEMLHLSITNTSVLPFGN-STLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 309 ~~IL~aLe~lgL~Vv~asvs~~g~-~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
..+-..++.+|++++...+..-|+ .++.+.| --.++..++++|.. .+.++|.
T Consensus 13 ~li~~~~~~~G~elvdve~~~~~~~~ilrV~I--D~~~~~~v~lddC~-~vSr~is 65 (154)
T PRK14645 13 QLAEGALEPLGYEVLEVQVQRSGGKRIVLVRI--DRKDEQPVTVEDLE-RASRALE 65 (154)
T ss_pred HHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEE--ECCCCCCcCHHHHH-HHHHHHH
Confidence 334556789999999999986654 4554333 22223357887763 3444443
No 185
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=24.62 E-value=1.1e+02 Score=33.99 Aligned_cols=60 Identities=13% Similarity=0.258 Sum_probs=46.0
Q ss_pred EEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 295 VLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 295 vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
.+++|-...++|+|..|+.+|. +|.-+.+.++|..+++.+.++ +++ .-..+.+.+..+|.
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~---~~~--~r~~~~~~~~~~~~ 691 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK---PGF--DRATVERDVTRVLA 691 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec---Ccc--cHHHHHHHHHHHHh
Confidence 5788999999999999999999 899999999999887654444 332 33455566666553
No 186
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=24.61 E-value=1.9e+02 Score=29.50 Aligned_cols=53 Identities=19% Similarity=0.409 Sum_probs=40.5
Q ss_pred eEEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 294 ~vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
++-|.+||.+.-|+ +...|.+++ .|.+.+++++..+|.+. .+..+++|+-.|+
T Consensus 188 ~~~l~~H~Hnd~GlA~AN~laAv~-aGa~~vd~tv~GlGera------------GNa~lE~vv~~L~ 241 (378)
T PRK11858 188 DIPIEVHCHNDFGMATANALAGIE-AGAKQVHTTVNGLGERA------------GNAALEEVVMALK 241 (378)
T ss_pred CCeEEEEecCCcCHHHHHHHHHHH-cCCCEEEEeeccccccc------------cCccHHHHHHHHH
Confidence 46789999999996 678888885 89999999998888542 2356666666554
No 187
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.36 E-value=1.2e+02 Score=23.96 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 037441 221 LGDAIRYVKELQERVKVLEEQTK 243 (366)
Q Consensus 221 L~~AI~YIk~Lq~~v~~L~~~~~ 243 (366)
+..||+-|..||.++.+|++++.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999998644
No 188
>PRK08639 threonine dehydratase; Validated
Probab=24.01 E-value=4e+02 Score=27.41 Aligned_cols=68 Identities=10% Similarity=0.075 Sum_probs=44.1
Q ss_pred eCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEe-CCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 291 SDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPF-GNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 291 ~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~-g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.++.+.+++.-+.+||.|.++++.+-..+-+|+....-.. +...-.+.+..+..+. -.+++|.+.|++
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~--~h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDA--EDYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 4678899999999999999999966665558876654321 2222234455555542 144566666654
No 189
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=23.55 E-value=3.3e+02 Score=27.48 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=39.6
Q ss_pred eCCeEEEEEEe---cCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 291 SDKDVLIRIHC---EKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 291 ~~~~vlIkI~c---~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
..+-.+|.|.. ...+|.+.+++.+|.+.|+.|+... +.+. .++++.... ..+..++.|++.|
T Consensus 334 ~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~--~s~~---~is~vv~~~-----d~~~av~~Lh~~f 398 (401)
T TIGR00656 334 EEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIG--SSET---NISFLVDEK-----DAEKAVRKLHEVF 398 (401)
T ss_pred eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCC---EEEEEEeHH-----HHHHHHHHHHHHH
Confidence 34445555555 3679999999999999999998433 2222 223332221 3467778888776
No 190
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=23.21 E-value=2e+02 Score=28.88 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=34.5
Q ss_pred CeEEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCc
Q 037441 293 KDVLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNS 333 (366)
Q Consensus 293 ~~vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~ 333 (366)
.++-|.+||.+.-|+ +...+.+++ .|.+++++++..+|.+
T Consensus 188 ~~i~ig~H~HnnlGla~ANslaAi~-aGa~~iD~Sl~GlG~~ 228 (337)
T PRK08195 188 PDTQVGFHGHNNLGLGVANSLAAVE-AGATRIDGSLAGLGAG 228 (337)
T ss_pred CCCeEEEEeCCCcchHHHHHHHHHH-hCCCEEEecChhhccc
Confidence 456788999999996 788888886 8999999999998885
No 191
>PRK14637 hypothetical protein; Provisional
Probab=23.05 E-value=4.4e+02 Score=23.54 Aligned_cols=50 Identities=14% Similarity=0.083 Sum_probs=35.7
Q ss_pred CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCc-EEEEEEEEEeCCCcccCHHHHHH
Q 037441 303 KQKGLLPKLISQLEMLHLSITNTSVLPFGNS-TLDITIIALKNAEFCTTMKDLVK 356 (366)
Q Consensus 303 kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~-~l~~tI~aq~~~~~~lsv~dLv~ 356 (366)
+.-|....+-.+++++|++++...+..-++. ++.+.|- ....++++|..+
T Consensus 6 ~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID----~~~gV~iddC~~ 56 (151)
T PRK14637 6 KDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIY----SAGGVGLDDCAR 56 (151)
T ss_pred ccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEE----CCCCCCHHHHHH
Confidence 4457788888899999999999999877664 5544332 223488877643
No 192
>PRK07431 aspartate kinase; Provisional
Probab=22.38 E-value=2.9e+02 Score=29.64 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=45.1
Q ss_pred EEEEeCCeEEEEEEec---CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 287 EARVSDKDVLIRIHCE---KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 287 eVrv~~~~vlIkI~c~---kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
++.+..+-.+|.|.+. +.+|++.+++.+|.+.++.|+..+. .+.. ++++ +.+. ..+++++.|+..|
T Consensus 341 ~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~s---Se~~--Is~v--v~~~---d~~~av~~Lh~~f 409 (587)
T PRK07431 341 EVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIST---SEVK--VSCV--IDAE---DGDKALRAVCEAF 409 (587)
T ss_pred cEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEc---CCCE--EEEE--EcHH---HHHHHHHHHHHHh
Confidence 3455566778888775 5689999999999999999976651 2222 2222 2222 3677888888877
No 193
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=22.25 E-value=2.2e+02 Score=27.74 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 037441 228 VKELQERVKVLEEQTKK 244 (366)
Q Consensus 228 Ik~Lq~~v~~L~~~~~~ 244 (366)
||.|+.||++||.+..+
T Consensus 57 L~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 57 LKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78899999999998643
No 194
>PRK14646 hypothetical protein; Provisional
Probab=21.80 E-value=5.8e+02 Score=22.80 Aligned_cols=52 Identities=15% Similarity=0.050 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCeEEEEEeEEeCCc-EEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 309 PKLISQLEMLHLSITNTSVLPFGNS-TLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 309 ~~IL~aLe~lgL~Vv~asvs~~g~~-~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
.-+-.+++++|++++...+..-|+. ++.+.| --.++..++++|. ..+.++|.
T Consensus 11 ~li~p~~~~~G~eLvdve~~~~~~~~~LrV~I--Dk~~g~gVtldDC-~~vSr~is 63 (155)
T PRK14646 11 ILLEKVANEFDLKICSLNIQTNQNPIVIKIII--KKTNGDDISLDDC-ALFNTPAS 63 (155)
T ss_pred HHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEE--ECCCCCCccHHHH-HHHHHHHH
Confidence 3445567899999999999876654 454333 2222334788776 33344443
No 195
>PRK06291 aspartate kinase; Provisional
Probab=21.69 E-value=4.1e+02 Score=27.74 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=44.1
Q ss_pred EEEeCCeEEEEEEec---CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 288 ARVSDKDVLIRIHCE---KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 288 Vrv~~~~vlIkI~c~---kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
+.+.++-.+|.|... ..+|++.+++.+|.+.|+.|.-.+..+-+. .++++.. .. ..+.+++.|+..|
T Consensus 392 i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~---~Is~vV~--~~---d~~~av~~Lh~~f 461 (465)
T PRK06291 392 VTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEV---NISFVVD--EE---DGERAVKVLHDEF 461 (465)
T ss_pred eEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccC---eEEEEEe--HH---HHHHHHHHHHHHh
Confidence 444556667887775 468999999999999999997544422222 2233322 22 3567778888776
No 196
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=21.21 E-value=5.2e+02 Score=26.06 Aligned_cols=43 Identities=12% Similarity=0.264 Sum_probs=32.9
Q ss_pred eEE-EEEeCCeEEEEEE---ecCCCCcHHHHHHHHHhCCCeEEEEEe
Q 037441 285 EIE-ARVSDKDVLIRIH---CEKQKGLLPKLISQLEMLHLSITNTSV 327 (366)
Q Consensus 285 ~Ve-Vrv~~~~vlIkI~---c~kr~glL~~IL~aLe~lgL~Vv~asv 327 (366)
.|. +....+-.+|.|. ...++|.+.+|+.+|.+.++.|.-.+.
T Consensus 250 ~v~~I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~ 296 (401)
T TIGR00656 250 LVKGIALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQ 296 (401)
T ss_pred ceEEEEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEc
Confidence 344 3455667788887 456789999999999999999975543
No 197
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=21.03 E-value=2e+02 Score=23.11 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCcchHHHHHHH-HHHHHH
Q 037441 197 KLSQRFIALSAILPGLKKMDKASVLGDAIR-YVKELQ 232 (366)
Q Consensus 197 kln~~~~~LrslvP~~~K~dKasiL~~AI~-YIk~Lq 232 (366)
.|.+++..|.+-. -..||-+|.+||+ ||.+++
T Consensus 15 E~~eRL~~Ls~~t----grtkayyvrEaIE~~ieemE 47 (80)
T COG4710 15 ELKERLDNLSKNT----GRTKAYYVREAIEAYIEEME 47 (80)
T ss_pred HHHHHHHHHHHhc----CCchhHHHHHHHHHHHHHHH
Confidence 3566677776544 5678999999997 565554
No 198
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=20.89 E-value=2.8e+02 Score=28.04 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=32.3
Q ss_pred EEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCc
Q 037441 295 VLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNS 333 (366)
Q Consensus 295 vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~ 333 (366)
+-|.+||.+.-|+ +...+.++ ..|.+.+++++..+|.+
T Consensus 186 v~l~~H~HNd~GlA~ANalaA~-~aGa~~vd~tl~GiGer 224 (365)
T TIGR02660 186 LPLEMHAHNDLGMATANTLAAV-RAGATHVNTTVNGLGER 224 (365)
T ss_pred CeEEEEecCCCChHHHHHHHHH-HhCCCEEEEEeeccccc
Confidence 5689999999996 77888888 77999999999888854
No 199
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=20.71 E-value=7.1e+02 Score=23.58 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=44.4
Q ss_pred EEeCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 289 RVSDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 289 rv~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
++..+...+.|.|... -+.++++.|++.++.+.+.++....+.. .+++...... ..+.+++++.|+.
T Consensus 139 ~~~~~~~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~l~~~L~~ 205 (215)
T PRK09977 139 RLMNKHYHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHE-VVAIDITLHA--TTSIEDLYRLLKG 205 (215)
T ss_pred HhccCcEEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCc-EEEEEEEECC--CCCHHHHHHHHhc
Confidence 3334556777888644 3689999999999999998876443322 2345555553 3577788777753
No 200
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=20.64 E-value=2.8e+02 Score=31.17 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=48.0
Q ss_pred CcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 306 GLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 306 glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
..-.+|..+|+++|+.|-++.+....+.-+.+.+......+.+...++++.-|..++.
T Consensus 465 ~~e~~i~~~L~~~gi~v~~v~~~~~~~g~~~I~l~~~~~~g~~~~~k~i~~~ls~~~g 522 (764)
T TIGR02865 465 LLEEKIIRALNKNGIPYEDVLAYNTEGGNIDVELTIAACGGRGECEKKIAPIISEVTG 522 (764)
T ss_pred HHHHHHHHHHHHCCCeeEEEEEEEcCCCcEEEEEEEcCCCCccchHHHHHHHHHHHhC
Confidence 3456799999999999999999887777777777777777778889999988887765
No 201
>PRK08841 aspartate kinase; Validated
Probab=20.54 E-value=3e+02 Score=28.27 Aligned_cols=64 Identities=9% Similarity=0.157 Sum_probs=43.3
Q ss_pred EEeCCeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 289 RVSDKDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 289 rv~~~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
.+.++-.+|.|.-...+|++.+++.+|.+.++.|+..+- +. ..++++ ++.. ..+..++.|+..|
T Consensus 313 ~~~~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~---s~--~~is~v--v~~~---~~~~av~~lH~~f 376 (392)
T PRK08841 313 RNSESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCST---EP--QSSMLV--LDPA---NVDRAANILHKTY 376 (392)
T ss_pred EEeCCEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEEC---CC--cEEEEE--EeHH---HHHHHHHHHHHHH
Confidence 334555677777777799999999999999999965553 22 222333 2222 4567778888766
No 202
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=20.49 E-value=3e+02 Score=27.67 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=34.2
Q ss_pred CeEEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCc
Q 037441 293 KDVLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNS 333 (366)
Q Consensus 293 ~~vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~ 333 (366)
.++-|.+||.+.-|+ +...+.+++ .|.+.+++++..+|.+
T Consensus 187 ~~i~ig~H~HnnlGla~ANslaAi~-aGa~~iD~Sl~G~G~~ 227 (333)
T TIGR03217 187 PETQVGFHAHHNLSLAVANSIAAIE-AGATRIDASLRGLGAG 227 (333)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHH-hCCCEEEeeccccccc
Confidence 457789999999996 788888885 8999999999998884
No 203
>PRK00907 hypothetical protein; Provisional
Probab=20.47 E-value=3.2e+02 Score=22.54 Aligned_cols=64 Identities=9% Similarity=0.077 Sum_probs=40.6
Q ss_pred eEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeE---EeCCcEEEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVL---PFGNSTLDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 294 ~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs---~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
++-|||-...++++...|+++++.+.-++-...+. .-+|+.+.+|+...+.+.- .++.|.+.|.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~e--Qld~iY~~L~ 83 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESRE--QYDAAHQALR 83 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHH--HHHHHHHHHh
Confidence 56788999999999999999999875433222221 2355566666666655442 3455555553
Done!