Query 037441
Match_columns 366
No_of_seqs 234 out of 1262
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 21:08:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 4.1E-16 1.4E-20 124.2 7.3 64 182-245 5-69 (82)
2 1hlo_A Protein (transcription 99.5 1.9E-14 6.4E-19 113.9 7.3 64 182-245 11-76 (80)
3 1nkp_B MAX protein, MYC proto- 99.5 2.6E-14 8.8E-19 113.7 7.4 64 183-246 2-67 (83)
4 4h10_B Circadian locomoter out 99.5 2.9E-14 9.8E-19 110.6 6.5 59 181-239 6-65 (71)
5 1an4_A Protein (upstream stimu 99.5 8E-15 2.7E-19 111.5 2.5 52 184-235 6-63 (65)
6 4ati_A MITF, microphthalmia-as 99.5 4.7E-14 1.6E-18 119.5 7.4 60 183-242 27-90 (118)
7 1nkp_A C-MYC, MYC proto-oncoge 99.5 5.6E-14 1.9E-18 113.3 7.4 62 183-244 6-70 (88)
8 1a0a_A BHLH, protein (phosphat 99.5 9.8E-15 3.4E-19 110.8 1.2 53 184-236 3-62 (63)
9 1nlw_A MAD protein, MAX dimeri 99.4 3.3E-13 1.1E-17 107.0 7.9 63 184-246 2-67 (80)
10 4h10_A ARYL hydrocarbon recept 99.4 7.1E-14 2.4E-18 109.1 3.8 54 180-233 6-63 (73)
11 3u5v_A Protein MAX, transcript 99.3 7.2E-13 2.4E-17 104.1 3.9 57 184-240 6-66 (76)
12 2ql2_B Neurod1, neurogenic dif 99.1 1.1E-10 3.7E-15 87.7 6.3 54 183-236 2-58 (60)
13 1mdy_A Protein (MYOD BHLH doma 99.1 7.8E-11 2.7E-15 90.6 5.6 56 181-236 10-67 (68)
14 4f3l_A Mclock, circadian locom 98.8 1.8E-09 6.2E-14 105.7 5.5 53 182-234 11-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.7 8.1E-09 2.8E-13 102.2 5.8 55 181-235 11-69 (387)
16 2lfh_A DNA-binding protein inh 98.5 2.4E-08 8.1E-13 76.5 1.6 45 189-233 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.3 9.1E-07 3.1E-11 70.2 6.4 48 195-242 4-55 (83)
18 4aya_A DNA-binding protein inh 98.0 9.6E-06 3.3E-10 66.2 6.1 48 190-237 32-82 (97)
19 1zpv_A ACT domain protein; str 96.8 0.018 6.1E-07 44.4 11.6 67 294-363 5-71 (91)
20 1u8s_A Glycine cleavage system 96.1 0.028 9.5E-07 49.7 9.8 65 294-362 6-70 (192)
21 2nyi_A Unknown protein; protei 95.8 0.042 1.4E-06 49.0 9.3 50 294-344 5-54 (195)
22 2ko1_A CTR148A, GTP pyrophosph 95.7 0.036 1.2E-06 42.1 7.5 63 294-359 5-67 (88)
23 2nyi_A Unknown protein; protei 94.6 0.19 6.6E-06 44.7 9.8 69 293-364 92-165 (195)
24 1u8s_A Glycine cleavage system 94.4 0.37 1.3E-05 42.3 11.3 70 293-364 92-168 (192)
25 3p96_A Phosphoserine phosphata 91.1 0.58 2E-05 45.7 8.4 67 293-361 11-77 (415)
26 3n0v_A Formyltetrahydrofolate 90.4 1.4 4.8E-05 41.9 10.1 66 293-361 7-74 (286)
27 3obi_A Formyltetrahydrofolate 89.3 2.8 9.5E-05 39.9 11.2 67 293-361 5-73 (288)
28 2jhe_A Transcription regulator 89.3 0.83 2.8E-05 38.3 6.8 35 296-330 2-36 (190)
29 3o1l_A Formyltetrahydrofolate 88.8 2.8 9.4E-05 40.2 10.8 67 293-361 21-89 (302)
30 2f1f_A Acetolactate synthase i 87.6 2.4 8.3E-05 37.1 8.8 63 295-360 4-67 (164)
31 3lou_A Formyltetrahydrofolate 87.1 3.1 0.00011 39.6 10.0 68 293-361 9-79 (292)
32 1y7p_A Hypothetical protein AF 86.2 1.8 6.2E-05 40.0 7.4 62 294-360 4-69 (223)
33 2pc6_A Probable acetolactate s 84.1 3.5 0.00012 36.2 8.0 63 295-360 5-68 (165)
34 2fgc_A Acetolactate synthase, 83.7 6.1 0.00021 35.6 9.6 62 295-359 30-92 (193)
35 3nrb_A Formyltetrahydrofolate 82.0 7.9 0.00027 36.7 10.2 63 293-359 6-70 (287)
36 2f06_A Conserved hypothetical 62.7 34 0.0012 28.0 8.4 56 297-360 75-130 (144)
37 2wt7_A Proto-oncogene protein 54.2 29 0.00099 25.3 5.7 42 191-245 1-42 (63)
38 2re1_A Aspartokinase, alpha an 50.8 80 0.0027 26.6 9.0 65 288-362 97-164 (167)
39 2dt9_A Aspartokinase; protein- 49.2 30 0.001 29.3 6.0 66 287-362 88-156 (167)
40 3s1t_A Aspartokinase; ACT doma 45.4 32 0.0011 29.9 5.7 66 287-362 89-157 (181)
41 4go7_X Aspartokinase; transfer 45.4 44 0.0015 29.9 6.6 61 284-344 24-88 (200)
42 2qmx_A Prephenate dehydratase; 42.5 64 0.0022 30.4 7.6 51 296-346 202-252 (283)
43 2f06_A Conserved hypothetical 42.3 66 0.0022 26.2 6.9 37 296-332 8-44 (144)
44 3luy_A Probable chorismate mut 42.2 1.1E+02 0.0038 29.4 9.4 44 303-346 217-260 (329)
45 2qmw_A PDT, prephenate dehydra 41.8 62 0.0021 30.2 7.3 49 296-344 188-239 (267)
46 2re1_A Aspartokinase, alpha an 41.5 53 0.0018 27.8 6.3 36 289-324 20-56 (167)
47 2dtj_A Aspartokinase; protein- 40.8 88 0.003 26.7 7.7 65 288-362 89-156 (178)
48 2lqj_A Mg2+ transport protein; 38.7 46 0.0016 26.2 5.0 63 295-359 9-75 (94)
49 3ble_A Citramalate synthase fr 38.7 41 0.0014 32.2 5.7 55 294-361 213-268 (337)
50 2dt9_A Aspartokinase; protein- 35.5 1E+02 0.0034 25.9 7.1 37 288-324 10-47 (167)
51 3ewb_X 2-isopropylmalate synth 32.9 51 0.0017 30.9 5.2 54 294-360 197-251 (293)
52 3mwb_A Prephenate dehydratase; 31.3 97 0.0033 29.6 6.9 52 295-346 202-254 (313)
53 3fx7_A Putative uncharacterize 31.1 1E+02 0.0035 24.6 5.8 22 221-242 65-86 (94)
54 3dxi_A Putative aldolase; TIM 28.8 75 0.0026 30.3 5.7 53 295-360 187-240 (320)
55 2er8_A Regulatory protein Leu3 28.1 41 0.0014 24.3 2.9 20 226-245 49-68 (72)
56 3ab4_A Aspartokinase; aspartat 26.6 1.1E+02 0.0037 30.0 6.6 65 288-362 338-405 (421)
57 2dtj_A Aspartokinase; protein- 25.4 2.2E+02 0.0076 24.1 7.7 35 289-323 10-45 (178)
58 1p3q_Q VPS9P, vacuolar protein 25.0 53 0.0018 23.6 2.9 26 189-214 3-28 (54)
59 3he4_B Synzip5; heterodimeric 24.7 93 0.0032 21.0 3.8 23 221-243 5-27 (46)
60 1zme_C Proline utilization tra 24.6 52 0.0018 23.4 2.9 19 226-244 44-62 (70)
61 1phz_A Protein (phenylalanine 24.4 66 0.0023 32.3 4.5 50 295-344 35-84 (429)
62 1dh3_A Transcription factor CR 24.0 57 0.0019 23.2 2.9 20 226-245 22-41 (55)
63 3s1t_A Aspartokinase; ACT doma 23.9 2.2E+02 0.0077 24.4 7.4 35 289-323 11-46 (181)
64 2jee_A YIIU; FTSZ, septum, coi 22.4 87 0.003 24.3 3.8 24 221-244 15-38 (81)
65 3c1m_A Probable aspartokinase; 22.3 1.4E+02 0.0046 29.9 6.4 68 288-363 398-468 (473)
66 1gd2_E Transcription factor PA 21.4 55 0.0019 24.6 2.5 17 226-242 29-45 (70)
67 2rrl_A FLIK, flagellar HOOK-le 21.3 1.9E+02 0.0063 25.3 6.3 47 283-329 100-152 (169)
68 1pd7_B MAD1; PAH2, SIN3, eukar 21.0 1.2E+02 0.0042 18.6 3.5 19 215-233 2-20 (26)
69 4go7_X Aspartokinase; transfer 20.7 1.6E+02 0.0053 26.2 5.8 66 288-363 109-177 (200)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.63 E-value=4.1e-16 Score=124.17 Aligned_cols=64 Identities=25% Similarity=0.420 Sum_probs=59.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHhhcCCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037441 182 ALAQDHIMAERKRREKLSQRFIALSAILPGL-KKMDKASVLGDAIRYVKELQERVKVLEEQTKKR 245 (366)
Q Consensus 182 ~~~~~h~~~ER~RR~kln~~~~~LrslvP~~-~K~dKasiL~~AI~YIk~Lq~~v~~L~~~~~~~ 245 (366)
..+..|+++||+||++||+.|.+|+++||++ .|+||++||.+||+||++|+.+++.|+++...+
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L 69 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL 69 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999987 899999999999999999999999999877654
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.52 E-value=1.9e-14 Score=113.88 Aligned_cols=64 Identities=23% Similarity=0.434 Sum_probs=59.4
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHhhcCCCC--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037441 182 ALAQDHIMAERKRREKLSQRFIALSAILPGL--KKMDKASVLGDAIRYVKELQERVKVLEEQTKKR 245 (366)
Q Consensus 182 ~~~~~h~~~ER~RR~kln~~~~~LrslvP~~--~K~dKasiL~~AI~YIk~Lq~~v~~L~~~~~~~ 245 (366)
..+..|+..||+||.+||+.|..|+++||.+ .|++|++||..||+||+.|++++++|+.+.+.+
T Consensus 11 ~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 11 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999975 699999999999999999999999999987654
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.51 E-value=2.6e-14 Score=113.70 Aligned_cols=64 Identities=23% Similarity=0.437 Sum_probs=58.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhcCCCC--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 037441 183 LAQDHIMAERKRREKLSQRFIALSAILPGL--KKMDKASVLGDAIRYVKELQERVKVLEEQTKKRT 246 (366)
Q Consensus 183 ~~~~h~~~ER~RR~kln~~~~~LrslvP~~--~K~dKasiL~~AI~YIk~Lq~~v~~L~~~~~~~~ 246 (366)
++..|+..||+||.+||+.|..|+++||.+ .|++|++||..||+||+.|+++++.|+.+.+...
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999974 8999999999999999999999999988766543
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.49 E-value=2.9e-14 Score=110.65 Aligned_cols=59 Identities=32% Similarity=0.501 Sum_probs=53.7
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHhhcCCCC-CCCCcchHHHHHHHHHHHHHHHHHHHH
Q 037441 181 PALAQDHIMAERKRREKLSQRFIALSAILPGL-KKMDKASVLGDAIRYVKELQERVKVLE 239 (366)
Q Consensus 181 ~~~~~~h~~~ER~RR~kln~~~~~LrslvP~~-~K~dKasiL~~AI~YIk~Lq~~v~~L~ 239 (366)
...+..|+++||+||++||+.|..|++|||.. .|+||++||..||+||+.||+++.=|+
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 35678999999999999999999999999975 699999999999999999999887554
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=8e-15 Score=111.51 Aligned_cols=52 Identities=31% Similarity=0.541 Sum_probs=48.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcCCCCC------CCCcchHHHHHHHHHHHHHHHH
Q 037441 184 AQDHIMAERKRREKLSQRFIALSAILPGLK------KMDKASVLGDAIRYVKELQERV 235 (366)
Q Consensus 184 ~~~h~~~ER~RR~kln~~~~~LrslvP~~~------K~dKasiL~~AI~YIk~Lq~~v 235 (366)
+..|+.+||+||++||+.|..|++|||.+. |++|++||.+||+||++||++.
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999999999999764 7899999999999999999865
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.48 E-value=4.7e-14 Score=119.52 Aligned_cols=60 Identities=22% Similarity=0.485 Sum_probs=52.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhcCCCCC----CCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 037441 183 LAQDHIMAERKRREKLSQRFIALSAILPGLK----KMDKASVLGDAIRYVKELQERVKVLEEQT 242 (366)
Q Consensus 183 ~~~~h~~~ER~RR~kln~~~~~LrslvP~~~----K~dKasiL~~AI~YIk~Lq~~v~~L~~~~ 242 (366)
.+..|+++||+||++||++|.+|++|||++. |++|++||.+||+||++||++++.|+++.
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999763 78899999999999999999999998753
No 7
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=5.6e-14 Score=113.30 Aligned_cols=62 Identities=29% Similarity=0.437 Sum_probs=56.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhcCCCC---CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037441 183 LAQDHIMAERKRREKLSQRFIALSAILPGL---KKMDKASVLGDAIRYVKELQERVKVLEEQTKK 244 (366)
Q Consensus 183 ~~~~h~~~ER~RR~kln~~~~~LrslvP~~---~K~dKasiL~~AI~YIk~Lq~~v~~L~~~~~~ 244 (366)
.+..|+..||+||.+||+.|..|+++||.. .|++|++||.+||+||++|+.+.+.|..+++.
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~ 70 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999999975 69999999999999999999999988775543
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.45 E-value=9.8e-15 Score=110.84 Aligned_cols=53 Identities=28% Similarity=0.471 Sum_probs=48.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcCCCC-------CCCCcchHHHHHHHHHHHHHHHHH
Q 037441 184 AQDHIMAERKRREKLSQRFIALSAILPGL-------KKMDKASVLGDAIRYVKELQERVK 236 (366)
Q Consensus 184 ~~~h~~~ER~RR~kln~~~~~LrslvP~~-------~K~dKasiL~~AI~YIk~Lq~~v~ 236 (366)
+..|+++||+||++||..|..|++|||.+ .|.+||+||+.||+||++||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 56899999999999999999999999954 567899999999999999998753
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.42 E-value=3.3e-13 Score=107.03 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=57.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcCCCC---CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 037441 184 AQDHIMAERKRREKLSQRFIALSAILPGL---KKMDKASVLGDAIRYVKELQERVKVLEEQTKKRT 246 (366)
Q Consensus 184 ~~~h~~~ER~RR~kln~~~~~LrslvP~~---~K~dKasiL~~AI~YIk~Lq~~v~~L~~~~~~~~ 246 (366)
+..|+..||+||..||+.|.+|+++||.. .|.+|++||..|++||+.|+++.+.|..+++...
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999964 6889999999999999999999999998766543
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.42 E-value=7.1e-14 Score=109.06 Aligned_cols=54 Identities=28% Similarity=0.452 Sum_probs=49.4
Q ss_pred CcchhhhhhHHHHHHHHHHHHHHHHHhhcCCCC----CCCCcchHHHHHHHHHHHHHH
Q 037441 180 TPALAQDHIMAERKRREKLSQRFIALSAILPGL----KKMDKASVLGDAIRYVKELQE 233 (366)
Q Consensus 180 ~~~~~~~h~~~ER~RR~kln~~~~~LrslvP~~----~K~dKasiL~~AI~YIk~Lq~ 233 (366)
...++..|+.+||+||++||+.|..|++|||.+ .|+|||+||..||+||+.|+.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 345688999999999999999999999999965 799999999999999999974
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.32 E-value=7.2e-13 Score=104.13 Aligned_cols=57 Identities=25% Similarity=0.329 Sum_probs=48.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcCCC---CCCC-CcchHHHHHHHHHHHHHHHHHHHHH
Q 037441 184 AQDHIMAERKRREKLSQRFIALSAILPG---LKKM-DKASVLGDAIRYVKELQERVKVLEE 240 (366)
Q Consensus 184 ~~~h~~~ER~RR~kln~~~~~LrslvP~---~~K~-dKasiL~~AI~YIk~Lq~~v~~L~~ 240 (366)
+..|+..||+||.+||+.|..|+.+||. ..|. +|+.||..||+||+.||+++++++.
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5679999999999999999999999994 3455 6889999999999999999998753
No 12
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.10 E-value=1.1e-10 Score=87.69 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=49.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhcCCCC---CCCCcchHHHHHHHHHHHHHHHHH
Q 037441 183 LAQDHIMAERKRREKLSQRFIALSAILPGL---KKMDKASVLGDAIRYVKELQERVK 236 (366)
Q Consensus 183 ~~~~h~~~ER~RR~kln~~~~~LrslvP~~---~K~dKasiL~~AI~YIk~Lq~~v~ 236 (366)
++..|+..||+|+..||+.|..||.+||.. .|.+|..+|..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999964 589999999999999999998764
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.10 E-value=7.8e-11 Score=90.62 Aligned_cols=56 Identities=27% Similarity=0.442 Sum_probs=50.5
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHhhcCCCC--CCCCcchHHHHHHHHHHHHHHHHH
Q 037441 181 PALAQDHIMAERKRREKLSQRFIALSAILPGL--KKMDKASVLGDAIRYVKELQERVK 236 (366)
Q Consensus 181 ~~~~~~h~~~ER~RR~kln~~~~~LrslvP~~--~K~dKasiL~~AI~YIk~Lq~~v~ 236 (366)
...+..|+..||+|+..||+.|..||.+||.. .|++|+.||..||+||.+|++.++
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 34577899999999999999999999999964 789999999999999999998653
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.85 E-value=1.8e-09 Score=105.66 Aligned_cols=53 Identities=30% Similarity=0.519 Sum_probs=42.8
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHhhcCC-CCCCCCcchHHHHHHHHHHHHHHH
Q 037441 182 ALAQDHIMAERKRREKLSQRFIALSAILP-GLKKMDKASVLGDAIRYVKELQER 234 (366)
Q Consensus 182 ~~~~~h~~~ER~RR~kln~~~~~LrslvP-~~~K~dKasiL~~AI~YIk~Lq~~ 234 (366)
..+..|+.+||+||++||..|..|++||| ...|+||++||..||.||+.|+..
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 34667999999999999999999999999 568999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.73 E-value=8.1e-09 Score=102.23 Aligned_cols=55 Identities=27% Similarity=0.425 Sum_probs=49.7
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHhhcCC----CCCCCCcchHHHHHHHHHHHHHHHH
Q 037441 181 PALAQDHIMAERKRREKLSQRFIALSAILP----GLKKMDKASVLGDAIRYVKELQERV 235 (366)
Q Consensus 181 ~~~~~~h~~~ER~RR~kln~~~~~LrslvP----~~~K~dKasiL~~AI~YIk~Lq~~v 235 (366)
..++..|+.+||+||++||+.|..|+.||| ...|+||++||..||.|||.|+...
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~ 69 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGAT 69 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC-
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhccc
Confidence 445889999999999999999999999999 5689999999999999999998543
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.51 E-value=2.4e-08 Score=76.49 Aligned_cols=45 Identities=18% Similarity=0.420 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC---CCCCcchHHHHHHHHHHHHHH
Q 037441 189 MAERKRREKLSQRFIALSAILPGL---KKMDKASVLGDAIRYVKELQE 233 (366)
Q Consensus 189 ~~ER~RR~kln~~~~~LrslvP~~---~K~dKasiL~~AI~YIk~Lq~ 233 (366)
..||+|+..||+.|..||.+||.. .|++|..+|.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 457889999999999999999964 689999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.32 E-value=9.1e-07 Score=70.23 Aligned_cols=48 Identities=19% Similarity=0.441 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcCCCC----CCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 037441 195 REKLSQRFIALSAILPGL----KKMDKASVLGDAIRYVKELQERVKVLEEQT 242 (366)
Q Consensus 195 R~kln~~~~~LrslvP~~----~K~dKasiL~~AI~YIk~Lq~~v~~L~~~~ 242 (366)
|..||++|..|..|||.+ .|.+|++||..|++||++||+.++.+.++.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999964 579999999999999999999999887643
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.98 E-value=9.6e-06 Score=66.17 Aligned_cols=48 Identities=21% Similarity=0.375 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC---CCCCcchHHHHHHHHHHHHHHHHHH
Q 037441 190 AERKRREKLSQRFIALSAILPGL---KKMDKASVLGDAIRYVKELQERVKV 237 (366)
Q Consensus 190 ~ER~RR~kln~~~~~LrslvP~~---~K~dKasiL~~AI~YIk~Lq~~v~~ 237 (366)
.||.|-..||+.|..||.+||.. .|..|..+|.-||+||..|++-++.
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 35788889999999999999953 6899999999999999999987654
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.83 E-value=0.018 Score=44.43 Aligned_cols=67 Identities=10% Similarity=0.170 Sum_probs=53.7
Q ss_pred eEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 294 ~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
.+.|.|.|++++|++.+|..+|-+.|+.|++.+..+..+. +.+.+...+.+ ...+++|.+.|+..-.
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~-~~~~i~v~~~~--~~~l~~l~~~L~~~~~ 71 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEY-FTMMAVVSSDE--KQDFTYLRNEFEAFGQ 71 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTE-EEEEEEEEESS--CCCHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCE-EEEEEEEEeCC--CCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999988777653 33566666655 3478889888886543
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.13 E-value=0.028 Score=49.68 Aligned_cols=65 Identities=9% Similarity=0.199 Sum_probs=50.5
Q ss_pred eEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 294 ~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
.+.|.|.|++++|++.+|..+|..+|+.|+.+++.+.++.++ .+++..... ...++|.+.|..++
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~-~~~~v~~~~---~~~~~l~~~L~~~~ 70 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFT-LLMLISGSP---SNITRVETTLPLLG 70 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEE-EEEEEEECH---HHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceE-EEEEEecCC---CCHHHHHHHHHHHH
Confidence 478899999999999999999999999999999988777655 355555432 24566666666544
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.76 E-value=0.042 Score=49.04 Aligned_cols=50 Identities=8% Similarity=0.234 Sum_probs=42.2
Q ss_pred eEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeC
Q 037441 294 DVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKN 344 (366)
Q Consensus 294 ~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~ 344 (366)
.+.|.|.|+.++|++.+|...|.++|+.|+.+...+.++.++ .++.....
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~-m~~~v~~~ 54 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFA-MIVLVSLN 54 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEE-EEEEEEES
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEE-EEEEEEec
Confidence 478999999999999999999999999999999988887654 34555544
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.70 E-value=0.036 Score=42.07 Aligned_cols=63 Identities=13% Similarity=0.226 Sum_probs=47.3
Q ss_pred eEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 294 ~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
.+.|+|.+.+++|+|.+|..+|.+.|+.|.+..+...++ ...+.+.....+. -.++++.+.|+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~-~~~~~i~v~~~~~--~~l~~l~~~L~ 67 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG-IFTCNLMIFVKNT--DKLTTLMDKLR 67 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS-EEEEEEEEEESSH--HHHHHHHHHHT
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC-EEEEEEEEEECCH--HHHHHHHHHHh
Confidence 467889999999999999999999999999999887776 4445555555443 24455555554
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.55 E-value=0.19 Score=44.69 Aligned_cols=69 Identities=6% Similarity=0.017 Sum_probs=50.8
Q ss_pred CeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeC-----CcEEEEEEEEEeCCCcccCHHHHHHHHHHHHHh
Q 037441 293 KDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFG-----NSTLDITIIALKNAEFCTTMKDLVKDIRLAFLK 364 (366)
Q Consensus 293 ~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g-----~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~~ 364 (366)
..+.|.|.|+.++|++.+|-..|-++|+.|+++...+.+ ...|.+.+...+.. ... ++|.+.|......
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~--~~~-~~l~~~l~~~a~~ 165 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF--PLY-QEVVTALSRVEEE 165 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG--GGH-HHHHHHHHHHHHH
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC--Ccc-HHHHHHHHHHHHH
Confidence 347899999999999999999999999999999998876 22333444444442 334 6777776655443
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=94.41 E-value=0.37 Score=42.33 Aligned_cols=70 Identities=13% Similarity=0.193 Sum_probs=52.3
Q ss_pred CeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeC-------CcEEEEEEEEEeCCCcccCHHHHHHHHHHHHHh
Q 037441 293 KDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFG-------NSTLDITIIALKNAEFCTTMKDLVKDIRLAFLK 364 (366)
Q Consensus 293 ~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g-------~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~~ 364 (366)
....|.|.|+.++|++.+|...|-+.|+.|..+...+.+ ...+.+.+.....+ ....++|.+.|......
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~--~~~~~~l~~~l~~~~~~ 168 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS--GCNLMQLQEEFDALCTA 168 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT--TSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC--CCCHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999998888765 22444445554443 45777888877765544
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=91.15 E-value=0.58 Score=45.66 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=51.5
Q ss_pred CeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 037441 293 KDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLA 361 (366)
Q Consensus 293 ~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~a 361 (366)
..++|.|.|+.++|+...|...|-++|..|++++-...++.++ ..+...+... ..+.++|.+.|...
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~-~~~~~~~~~~-~~~~~~l~~~l~~~ 77 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLT-LGVLVCCPAD-VADGPALRHDVEAA 77 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEE-EEEEEEECHH-HHTSHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeE-EEEEEEecCC-cCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999888888654 4455555432 23456777766543
No 26
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=90.45 E-value=1.4 Score=41.87 Aligned_cols=66 Identities=8% Similarity=0.019 Sum_probs=49.4
Q ss_pred CeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeE--EeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 037441 293 KDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVL--PFGNSTLDITIIALKNAEFCTTMKDLVKDIRLA 361 (366)
Q Consensus 293 ~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs--~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~a 361 (366)
..+.|.|.|++++|++.+|-..|-++|+.|++++-. ...+.++ ..+.....+ ..+.++|.+.|...
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff-mr~~~~~~~--~~~~~~L~~~f~~l 74 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFF-IRVEFRQPD--DFDEAGFRAGLAER 74 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEE-EEEEEECCS--SCCHHHHHHHHHHH
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeE-EEEEEecCC--CCCHHHHHHHHHHH
Confidence 347789999999999999999999999999998876 3344333 344455544 36778887777643
No 27
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=89.34 E-value=2.8 Score=39.87 Aligned_cols=67 Identities=9% Similarity=0.179 Sum_probs=49.4
Q ss_pred CeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeE--EeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 037441 293 KDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVL--PFGNSTLDITIIALKNAEFCTTMKDLVKDIRLA 361 (366)
Q Consensus 293 ~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs--~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~a 361 (366)
..+.|.|.|++++|+..+|...|-++|+.|+.++-. ...+.++ ..+...+.+. ..+.++|.+.|...
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff-mr~~~~~~~~-~~~~~~L~~~f~~l 73 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFF-MRVVFNAAAK-VIPLASLRTGFGVI 73 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEE-EEEEEEESSC-CCCHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceE-EEEEEEcCCC-CCCHHHHHHHHHHH
Confidence 457899999999999999999999999999988864 2344333 3444555443 35777887777543
No 28
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=89.31 E-value=0.83 Score=38.34 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=32.2
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEe
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPF 330 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~ 330 (366)
-|+|.|.+|.|++.+|+.+|-+.++.+...++.+-
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 47899999999999999999999999999998655
No 29
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=88.80 E-value=2.8 Score=40.24 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=48.7
Q ss_pred CeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEe--CCcEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 037441 293 KDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPF--GNSTLDITIIALKNAEFCTTMKDLVKDIRLA 361 (366)
Q Consensus 293 ~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~--g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~a 361 (366)
..+.|.|.|++++|+..+|-..|-+.|+.|+.++-..- ++.++ ..+.....+. ..+.++|.+.|...
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~Ff-Mr~~~~~~~~-~~~~~~L~~~l~~l 89 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFF-MRHEIRADTL-PFDLDGFREAFTPI 89 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEE-EEEEEEGGGS-SSCHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEE-EEEEEecCCC-CCCHHHHHHHHHHH
Confidence 34678999999999999999999999999999887653 34333 3344444322 35777777777543
No 30
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=87.58 E-value=2.4 Score=37.11 Aligned_cols=63 Identities=16% Similarity=0.295 Sum_probs=47.1
Q ss_pred EEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCC-cEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 295 VLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGN-STLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 295 vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~-~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
-.|.|..++++|+|.+|...|...|+.|.+.++.+..+ ....++|+.. ++ .-.++.|.+.|+.
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~d--~~~leqI~kqL~K 67 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-GD--EKVLEQIEKQLHK 67 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-SC--HHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-cc--HHHHHHHHHHHcC
Confidence 35788999999999999999999999999988876654 4555677776 33 2345566555554
No 31
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=87.10 E-value=3.1 Score=39.61 Aligned_cols=68 Identities=7% Similarity=0.212 Sum_probs=47.6
Q ss_pred CeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeE--EeCCcEEEEEEEEEeCC-CcccCHHHHHHHHHHH
Q 037441 293 KDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVL--PFGNSTLDITIIALKNA-EFCTTMKDLVKDIRLA 361 (366)
Q Consensus 293 ~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs--~~g~~~l~~tI~aq~~~-~~~lsv~dLv~~L~~a 361 (366)
..+.|.|.|++++|+..+|-..|-++|+.|++++-. ...+.++ ..+...... +...+.++|.+.|...
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff-mr~~~~~~~~~~~~~~~~L~~~f~~l 79 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFF-VRCVFHATDDADALRVDALRREFEPI 79 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEE-EEEEEEECC----CCHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceE-EEEEEEccCcccCCCHHHHHHHHHHH
Confidence 457899999999999999999999999999998876 3344433 333333430 2235677777777543
No 32
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=86.22 E-value=1.8 Score=39.96 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=44.6
Q ss_pred eEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeC----CcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFG----NSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 294 ~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g----~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
.+-|.|.+.+++|+|.+|+.+|-+.+..|.+.+...-. +..- ++..++.+. .+++|.++|++
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A--~I~IEV~d~---~Le~LL~kLrk 69 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKA--LIYFEIEGG---DFEKILERVKT 69 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEE--EEEEEECSS---CHHHHHHHHHT
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEE--EEEEEECCC---CHHHHHHHHhC
Confidence 46788999999999999999999999999988887654 3332 233566554 78888888874
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=84.11 E-value=3.5 Score=36.18 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=46.4
Q ss_pred EEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCC-cEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 295 VLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGN-STLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 295 vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~-~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
-.|.|..++++|+|.+|...|...|+.|.+.++.+..+ ....++|+.. ++ .-.++.|.+.|+.
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~-~d--~~~leql~kQL~K 68 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-GP--DEIVEQITKQLNK 68 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-EC--HHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe-cc--HHHHHHHHHHhcC
Confidence 36788999999999999999999999999988876653 4555677776 23 2245555555543
No 34
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=83.68 E-value=6.1 Score=35.63 Aligned_cols=62 Identities=13% Similarity=0.207 Sum_probs=46.7
Q ss_pred EEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCC-cEEEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 295 VLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGN-STLDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 295 vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~-~~l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
-.|.|..++++|.|.+|...|...|+.|.+.++.+..+ .+..++|++.-.+ -.++.|.+.|.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e---~~ieqL~kQL~ 92 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD---KTIEQIEKQAY 92 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT---THHHHHHHHHT
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH---HHHHHHHHHhc
Confidence 46778889999999999999999999999988876555 4555677776432 24556655554
No 35
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=82.02 E-value=7.9 Score=36.66 Aligned_cols=63 Identities=8% Similarity=0.168 Sum_probs=42.9
Q ss_pred CeEEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeE--EeCCcEEEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 293 KDVLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVL--PFGNSTLDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 293 ~~vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs--~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
..+.|.|.|++++|+..+|-..|-++|+.|+.++-. ..++.++ ..+...... ...++|.+.|.
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff-mr~~~~~~~---~~~~~L~~~f~ 70 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFF-MRVSVEIPV---AGVNDFNSAFG 70 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEE-EEEEEECCC------CHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEE-EEEEEEcCC---CCHHHHHHHHH
Confidence 357899999999999999999999999999988874 3344333 334343332 23335555554
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=62.75 E-value=34 Score=27.97 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=37.0
Q ss_pred EEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 297 IRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 297 IkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
|.+..+.++|.+.+++++|.+.|+.|...-.+.-++.. .++...+ ..+..++.|+.
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~---~~~i~~~-----d~~~A~~~L~~ 130 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVA---NVVIRPS-----NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEE---EEEEEES-----CHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcE---EEEEEeC-----CHHHHHHHHHH
Confidence 45567899999999999999999999654433223322 2222332 55666666665
No 37
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=54.22 E-value=29 Score=25.29 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037441 191 ERKRREKLSQRFIALSAILPGLKKMDKASVLGDAIRYVKELQERVKVLEEQTKKR 245 (366)
Q Consensus 191 ER~RR~kln~~~~~LrslvP~~~K~dKasiL~~AI~YIk~Lq~~v~~L~~~~~~~ 245 (366)
||++|.+...+.+|.++= ..-..|+..|+.++..|+.++..+
T Consensus 1 Ekr~rrrerNR~AA~rcR-------------~rKk~~~~~Le~~v~~L~~~n~~L 42 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR-------------NRRRELTDTLQAETDQLEDEKSAL 42 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777651 234577888888888887765543
No 38
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=50.76 E-value=80 Score=26.62 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=42.5
Q ss_pred EEEeCCeEEEEEEecC---CCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 288 ARVSDKDVLIRIHCEK---QKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 288 Vrv~~~~vlIkI~c~k---r~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
+.+.++-..|.|.... ++|.+.+++++|.+.|+.|...+ + ....+ +++... . ..+..++.|+.+|
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--t-se~~i--s~vv~~--~---d~~~av~~Lh~~f 164 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--T-SEIKV--SVLIDE--K---YMELATRVLHKAF 164 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--E-CSSEE--EEEEEG--G---GHHHHHHHHHHHT
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--c-ccCEE--EEEEeH--H---HHHHHHHHHHHHh
Confidence 3445566778888765 78999999999999999996643 2 22222 233221 1 3456677777665
No 39
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=49.24 E-value=30 Score=29.33 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=43.5
Q ss_pred EEEEeCCeEEEEEEecC---CCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 287 EARVSDKDVLIRIHCEK---QKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 287 eVrv~~~~vlIkI~c~k---r~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
++.+.++-..|.|.... .+|++.+++++|.+.|+.|.-.+. ... .++++. +.. ..++.++.|+.+|
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~---Se~--~is~vv--~~~---d~~~Av~~Lh~~f 156 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIAT---SEV--RISVII--PAE---YAEAALRAVHQAF 156 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEE---CSS--EEEEEE--EGG---GHHHHHHHHHHHT
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEc---cCC--EEEEEE--eHH---HHHHHHHHHHHHH
Confidence 44455677788888764 789999999999999999944331 122 223332 222 3567777777765
No 40
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=45.40 E-value=32 Score=29.89 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=44.1
Q ss_pred EEEEeCCeEEEEEEec---CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 287 EARVSDKDVLIRIHCE---KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 287 eVrv~~~~vlIkI~c~---kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
++.+.++-..|.|... ..+|++.+++++|.+.|+.|.-.+.+ .- . |.+-++.. ..+..++.|+.+|
T Consensus 89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstS--ei-~----Is~vV~~~---d~~~Av~aLH~~f 157 (181)
T 3s1t_A 89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS--EI-R----ISVLCRDT---ELDKAVVALHEAF 157 (181)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE--TT-E----EEEEEEGG---GHHHHHHHHHHHH
T ss_pred eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcC--CC-E----EEEEEeHH---HHHHHHHHHHHHH
Confidence 3445566677777664 67899999999999999998665521 22 2 22222232 4567788888876
No 41
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=45.36 E-value=44 Score=29.87 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=40.4
Q ss_pred CeEE-EEEeCCeEEEEEE-ecCCCCcHHHHHHHHHhCCCeE--EEEEeEEeCCcEEEEEEEEEeC
Q 037441 284 PEIE-ARVSDKDVLIRIH-CEKQKGLLPKLISQLEMLHLSI--TNTSVLPFGNSTLDITIIALKN 344 (366)
Q Consensus 284 p~Ve-Vrv~~~~vlIkI~-c~kr~glL~~IL~aLe~lgL~V--v~asvs~~g~~~l~~tI~aq~~ 344 (366)
+.|. +-...+.+.|.|. .+.++|.+.+|+.+|.+.|+.| +.-+++...+...++++.+.-.
T Consensus 24 ~vVtGIa~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~ 88 (200)
T 4go7_X 24 PILTGVAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD 88 (200)
T ss_dssp CEEEEEEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG
T ss_pred CcEEEEEccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh
Confidence 3443 3455677788875 4788999999999999999888 4444444444455555665443
No 42
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=42.54 E-value=64 Score=30.39 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=40.6
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCC
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAE 346 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~ 346 (366)
.|-+..++++|.|.++|..|...|+.+..-..-+..+....|.|...+++.
T Consensus 202 sl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~ 252 (283)
T 2qmx_A 202 SIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH 252 (283)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC
T ss_pred EEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC
Confidence 333444688999999999999999999988888887776677777777654
No 43
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=42.32 E-value=66 Score=26.15 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=29.6
Q ss_pred EEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCC
Q 037441 296 LIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGN 332 (366)
Q Consensus 296 lIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~ 332 (366)
.|.|..++++|.+.+|...|.+.|+.|..-.+....+
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 4567778999999999999999999997766544333
No 44
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=42.23 E-value=1.1e+02 Score=29.39 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=39.4
Q ss_pred CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCC
Q 037441 303 KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAE 346 (366)
Q Consensus 303 kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~ 346 (366)
+++|.|.++|..|...|+....-..-+..+....|.|...+++.
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~ 260 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAA 260 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSC
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCC
Confidence 57999999999999999999988888889988889888888765
No 45
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=41.78 E-value=62 Score=30.22 Aligned_cols=49 Identities=8% Similarity=0.206 Sum_probs=39.5
Q ss_pred EEEEEe---cCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeC
Q 037441 296 LIRIHC---EKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKN 344 (366)
Q Consensus 296 lIkI~c---~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~ 344 (366)
.|-+.. .+++|.|.++|..|...|+.+..-..-+..+....|.|...++
T Consensus 188 sl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e 239 (267)
T 2qmw_A 188 SLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD 239 (267)
T ss_dssp EEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred EEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe
Confidence 444555 7889999999999999999998888878777666676777776
No 46
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=41.46 E-value=53 Score=27.75 Aligned_cols=36 Identities=6% Similarity=0.197 Sum_probs=29.9
Q ss_pred EEeCCeEEEEEEe-cCCCCcHHHHHHHHHhCCCeEEE
Q 037441 289 RVSDKDVLIRIHC-EKQKGLLPKLISQLEMLHLSITN 324 (366)
Q Consensus 289 rv~~~~vlIkI~c-~kr~glL~~IL~aLe~lgL~Vv~ 324 (366)
....+-.+|.|.. ++++|.+.+|+.+|.+.|+.|..
T Consensus 20 a~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~ 56 (167)
T 2re1_A 20 AFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDM 56 (167)
T ss_dssp EEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCC
T ss_pred EecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEE
Confidence 4456677888884 78899999999999999999843
No 47
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=40.81 E-value=88 Score=26.75 Aligned_cols=65 Identities=9% Similarity=0.188 Sum_probs=43.3
Q ss_pred EEEeCCeEEEEEEec---CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 288 ARVSDKDVLIRIHCE---KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 288 Vrv~~~~vlIkI~c~---kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
+.+.++-.+|.|... ..+|++.+++.+|.+.|+.|.-.+ +-. .-+ .++. +. -..+..++.|+.+|
T Consensus 89 v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe-~~I--s~vV--~~---~d~~~Av~~Lh~~F 156 (178)
T 2dtj_A 89 VLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSE-IRI--SVLI--RE---DDLDAAARALHEQF 156 (178)
T ss_dssp EEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EET-TEE--EEEE--EG---GGHHHHHHHHHHHH
T ss_pred EEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCC-CeE--EEEE--eH---HHHHHHHHHHHHHH
Confidence 455667778888775 567999999999999999996543 222 222 2222 12 24667777788776
No 48
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=38.73 E-value=46 Score=26.18 Aligned_cols=63 Identities=11% Similarity=0.322 Sum_probs=44.4
Q ss_pred EEEEEEecCC--CCcHHHHHHHHHhCCCeEEEEEeEEeCCc-E-EEEEEEEEeCCCcccCHHHHHHHHH
Q 037441 295 VLIRIHCEKQ--KGLLPKLISQLEMLHLSITNTSVLPFGNS-T-LDITIIALKNAEFCTTMKDLVKDIR 359 (366)
Q Consensus 295 vlIkI~c~kr--~glL~~IL~aLe~lgL~Vv~asvs~~g~~-~-l~~tI~aq~~~~~~lsv~dLv~~L~ 359 (366)
..|+|.|... ..+..-+++.|+..++.+..-....+++. + +..++++.-.+. -.++.|+..|-
T Consensus 9 Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~veI~A~L~at~~~~--~~Le~iv~rLs 75 (94)
T 2lqj_A 9 YQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVGHTP--AKLERLVAELS 75 (94)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCEEEEEEEEEESCCH--HHHHHHHHHHH
T ss_pred EEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeEEEEEEEEecCCCH--HHHHHHHHHHh
Confidence 5788999766 44788899999999999988876666554 4 445666655544 35666666653
No 49
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=38.70 E-value=41 Score=32.17 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=44.1
Q ss_pred eEEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLA 361 (366)
Q Consensus 294 ~vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~a 361 (366)
++-|.+||.+.-|+ +...+.+++. |.+++++++..+|++ ..+...++|+-.|+..
T Consensus 213 ~~~i~~H~Hnd~GlA~AN~laAv~a-Ga~~vd~tv~GlG~~------------aGN~~~E~lv~~L~~~ 268 (337)
T 3ble_A 213 DIHFEFHGHNDYDLSVANSLQAIRA-GVKGLHASINGLGER------------AGNTPLEALVTTIHDK 268 (337)
T ss_dssp TSCEEEECBCTTSCHHHHHHHHHHT-TCSEEEEBGGGCSST------------TCBCBHHHHHHHHHHH
T ss_pred CCeEEEEecCCcchHHHHHHHHHHh-CCCEEEEeccccccc------------ccchhHHHHHHHHHHh
Confidence 45688999999996 7889999986 999999999888873 2356778888777653
No 50
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=35.52 E-value=1e+02 Score=25.94 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=29.1
Q ss_pred EEEeCCeEEEEEEe-cCCCCcHHHHHHHHHhCCCeEEE
Q 037441 288 ARVSDKDVLIRIHC-EKQKGLLPKLISQLEMLHLSITN 324 (366)
Q Consensus 288 Vrv~~~~vlIkI~c-~kr~glL~~IL~aLe~lgL~Vv~ 324 (366)
+....+-.+|.|.. ++++|.+.+|+.+|.+.|+.|.-
T Consensus 10 Ia~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~ 47 (167)
T 2dt9_A 10 VALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDM 47 (167)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSC
T ss_pred EEEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEE
Confidence 34456677887765 67789999999999999988843
No 51
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=32.92 E-value=51 Score=30.92 Aligned_cols=54 Identities=13% Similarity=0.330 Sum_probs=44.5
Q ss_pred eEEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 294 DVLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 294 ~vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
++-|.+||.+..|+ +...+.+++ .|.+++++++..+|++ -.+...++|+-.|+.
T Consensus 197 ~~~l~~H~Hnd~Gla~AN~laA~~-aGa~~vd~sv~GlGer------------aGN~~~E~vv~~L~~ 251 (293)
T 3ewb_X 197 DIIFASHCHDDLGMATANALAAIE-NGARRVEGTINGIGER------------AGNTALEEVAVALHI 251 (293)
T ss_dssp GSEEEEECBCTTSCHHHHHHHHHH-TTCCEEEEBGGGCCTT------------TCBCBHHHHHHHHHH
T ss_pred CceEEEEeCCCcChHHHHHHHHHH-hCCCEEEeeccccccc------------cccHhHHHHHHHHHh
Confidence 36789999999996 788888887 8999999999888872 245688899888874
No 52
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=31.29 E-value=97 Score=29.61 Aligned_cols=52 Identities=10% Similarity=0.119 Sum_probs=39.1
Q ss_pred EEEEEEec-CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCC
Q 037441 295 VLIRIHCE-KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAE 346 (366)
Q Consensus 295 vlIkI~c~-kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~ 346 (366)
..|-+..+ +++|.|.++|..|...|+....-..-+..+....|.|...+++.
T Consensus 202 TSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~ 254 (313)
T 3mwb_A 202 TTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGH 254 (313)
T ss_dssp EEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESC
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCC
Confidence 34445564 78999999999999999999888777777665556666666543
No 53
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=31.08 E-value=1e+02 Score=24.59 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037441 221 LGDAIRYVKELQERVKVLEEQT 242 (366)
Q Consensus 221 L~~AI~YIk~Lq~~v~~L~~~~ 242 (366)
.+.|=+||..|+++|+.|++..
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHHH
Confidence 5678899999999999999854
No 54
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=28.79 E-value=75 Score=30.33 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=42.8
Q ss_pred EEEEEEecCCCCc-HHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHH
Q 037441 295 VLIRIHCEKQKGL-LPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRL 360 (366)
Q Consensus 295 vlIkI~c~kr~gl-L~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~ 360 (366)
+-|.+||.+..|+ +...+.+++ .|.+++++++..+|++ -.+...++|+-.|+.
T Consensus 187 ~~i~~H~Hn~~G~a~an~laA~~-aGa~~vd~si~GlG~~------------~GN~~~E~lv~~L~~ 240 (320)
T 3dxi_A 187 VPVGFHGHDNLQLGLINSITAID-DGIDFIDATITGMGRG------------AGNLKMELLLTYLNK 240 (320)
T ss_dssp SCEEEECBCTTSCHHHHHHHHHH-TTCSEEEEBGGGCSST------------TCBCBHHHHHHHHHH
T ss_pred CeEEEEeCCCCccHHHHHHHHHH-hCCCEEEEeccccCCc------------ccchhHHHHHHHHHh
Confidence 5688999999886 778888887 6999999999999986 234677777777765
No 55
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=28.06 E-value=41 Score=24.25 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 037441 226 RYVKELQERVKVLEEQTKKR 245 (366)
Q Consensus 226 ~YIk~Lq~~v~~L~~~~~~~ 245 (366)
.||..|+++|+.|+..+...
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999877643
No 56
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=26.61 E-value=1.1e+02 Score=29.96 Aligned_cols=65 Identities=11% Similarity=0.195 Sum_probs=43.3
Q ss_pred EEEeCCeEEEEEEec---CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHH
Q 037441 288 ARVSDKDVLIRIHCE---KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAF 362 (366)
Q Consensus 288 Vrv~~~~vlIkI~c~---kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL 362 (366)
+.+.++-..|.|... ..+|++.+++++|.+.|+.|.-.+. ... . +.++ ++.. ..+..++.|+.+|
T Consensus 338 v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~--Se~-~--is~v--V~~~---d~~~Av~~Lh~~f 405 (421)
T 3ab4_A 338 VLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIST--SEI-R--ISVL--IRED---DLDAAARALHEQF 405 (421)
T ss_dssp EEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEE--ETT-E--EEEE--EEGG---GHHHHHHHHHHHT
T ss_pred EEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEc--CCC-e--EEEE--EeHH---HHHHHHHHHHHHH
Confidence 444566677888774 5789999999999999999963332 122 2 2222 2232 4577778888776
No 57
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=25.43 E-value=2.2e+02 Score=24.11 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=28.1
Q ss_pred EEeCCeEEEEEE-ecCCCCcHHHHHHHHHhCCCeEE
Q 037441 289 RVSDKDVLIRIH-CEKQKGLLPKLISQLEMLHLSIT 323 (366)
Q Consensus 289 rv~~~~vlIkI~-c~kr~glL~~IL~aLe~lgL~Vv 323 (366)
....+-++|.|. -++++|.+.+|+..|.+.|+.|.
T Consensus 10 a~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId 45 (178)
T 2dtj_A 10 ATDKSEAKVTVLGISDKPGEAAKVFRALADAEINID 45 (178)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCC
T ss_pred EecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEE
Confidence 445677788884 57889999999999999996653
No 58
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=24.95 E-value=53 Score=23.62 Aligned_cols=26 Identities=8% Similarity=0.308 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCC
Q 037441 189 MAERKRREKLSQRFIALSAILPGLKK 214 (366)
Q Consensus 189 ~~ER~RR~kln~~~~~LrslvP~~~K 214 (366)
.++|-+|...++-+.+|+.+.|+..+
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 57788999999999999999998754
No 59
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=24.73 E-value=93 Score=20.96 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 037441 221 LGDAIRYVKELQERVKVLEEQTK 243 (366)
Q Consensus 221 L~~AI~YIk~Lq~~v~~L~~~~~ 243 (366)
+.+--+||++|+++..+|+.-++
T Consensus 5 vkelknyiqeleernaelknlke 27 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKE 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHH
Confidence 45667899999999988876443
No 60
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=24.64 E-value=52 Score=23.43 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 037441 226 RYVKELQERVKVLEEQTKK 244 (366)
Q Consensus 226 ~YIk~Lq~~v~~L~~~~~~ 244 (366)
.||..|+++++.|+..+..
T Consensus 44 ~~~~~L~~ri~~Le~~l~~ 62 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788888888888876654
No 61
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=24.38 E-value=66 Score=32.30 Aligned_cols=50 Identities=12% Similarity=0.194 Sum_probs=38.4
Q ss_pred EEEEEEecCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeC
Q 037441 295 VLIRIHCEKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKN 344 (366)
Q Consensus 295 vlIkI~c~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~ 344 (366)
..|-+..++++|.|.++|..+...|+.+..-..-+..+..-.|.+...++
T Consensus 35 TSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e 84 (429)
T 1phz_A 35 ISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD 84 (429)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC
T ss_pred EEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe
Confidence 33445557889999999999999999997777667666555677777776
No 62
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=24.01 E-value=57 Score=23.20 Aligned_cols=20 Identities=55% Similarity=0.758 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 037441 226 RYVKELQERVKVLEEQTKKR 245 (366)
Q Consensus 226 ~YIk~Lq~~v~~L~~~~~~~ 245 (366)
.||..|+.+|..|+.++..+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L 41 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTL 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78999999999998876654
No 63
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=23.92 E-value=2.2e+02 Score=24.37 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=27.9
Q ss_pred EEeCCeEEEEEEe-cCCCCcHHHHHHHHHhCCCeEE
Q 037441 289 RVSDKDVLIRIHC-EKQKGLLPKLISQLEMLHLSIT 323 (366)
Q Consensus 289 rv~~~~vlIkI~c-~kr~glL~~IL~aLe~lgL~Vv 323 (366)
....+-++|.|.. +.++|.+.+|+.+|.+.++.|.
T Consensus 11 a~~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd 46 (181)
T 3s1t_A 11 AHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNID 46 (181)
T ss_dssp EEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCC
T ss_pred EecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEE
Confidence 4456667777654 5779999999999999999884
No 64
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.35 E-value=87 Score=24.33 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 037441 221 LGDAIRYVKELQERVKVLEEQTKK 244 (366)
Q Consensus 221 L~~AI~YIk~Lq~~v~~L~~~~~~ 244 (366)
+..||+-|.-||-++++|++++..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999887654
No 65
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=22.35 E-value=1.4e+02 Score=29.85 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=44.1
Q ss_pred EEEeCCeEEEEEEec---CCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 288 ARVSDKDVLIRIHCE---KQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 288 Vrv~~~~vlIkI~c~---kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
+.+..+-.+|.|... ..+|++.+++.+|.+.|+.|.-. ..|.+-..+.++ ++.. ..+..++.|+.+|-
T Consensus 398 v~~~~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~mi---sqgtSe~~Is~v--V~~~---d~~~Av~aLh~~f~ 468 (473)
T 3c1m_A 398 VSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMI---AQGSSEVNISFV--IDEK---DLLNCVRKLHEKFI 468 (473)
T ss_dssp EEEEEEEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCCCEE---EESSCSSEEEEE--EEGG---GHHHHHHHHHHHHT
T ss_pred EEEeCCcEEEEEEecCCCCChhHHHHHHHHHHHCCCCEEEE---ecCCCCceEEEE--EcHH---HHHHHHHHHHHHHh
Confidence 444455667777774 46899999999999999988333 233332233333 3332 35777888888763
No 66
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.36 E-value=55 Score=24.65 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037441 226 RYVKELQERVKVLEEQT 242 (366)
Q Consensus 226 ~YIk~Lq~~v~~L~~~~ 242 (366)
.||+.|+.+|..|+...
T Consensus 29 ~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 29 DHLKALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57777777777776543
No 67
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=21.32 E-value=1.9e+02 Score=25.34 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=39.1
Q ss_pred CCeEEEEEeCCeEEEEEEecCCC------CcHHHHHHHHHhCCCeEEEEEeEE
Q 037441 283 LPEIEARVSDKDVLIRIHCEKQK------GLLPKLISQLEMLHLSITNTSVLP 329 (366)
Q Consensus 283 ~p~VeVrv~~~~vlIkI~c~kr~------glL~~IL~aLe~lgL~Vv~asvs~ 329 (366)
..+|.+++.++.+.|.+...... .-+..+-++|++-||.+.+.+|..
T Consensus 100 ~l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~ 152 (169)
T 2rrl_A 100 QVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISS 152 (169)
T ss_dssp CEEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEES
T ss_pred cEEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEec
Confidence 45777788899999999998763 358889999999999999988853
No 68
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=20.96 E-value=1.2e+02 Score=18.60 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=14.9
Q ss_pred CCcchHHHHHHHHHHHHHH
Q 037441 215 MDKASVLGDAIRYVKELQE 233 (366)
Q Consensus 215 ~dKasiL~~AI~YIk~Lq~ 233 (366)
+....+|-+|.+|+...++
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4566789999999986665
No 69
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=20.70 E-value=1.6e+02 Score=26.20 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=42.5
Q ss_pred EEEeCCeEEEEEEe---cCCCCcHHHHHHHHHhCCCeEEEEEeEEeCCcEEEEEEEEEeCCCcccCHHHHHHHHHHHHH
Q 037441 288 ARVSDKDVLIRIHC---EKQKGLLPKLISQLEMLHLSITNTSVLPFGNSTLDITIIALKNAEFCTTMKDLVKDIRLAFL 363 (366)
Q Consensus 288 Vrv~~~~vlIkI~c---~kr~glL~~IL~aLe~lgL~Vv~asvs~~g~~~l~~tI~aq~~~~~~lsv~dLv~~L~~aL~ 363 (366)
+.+.++-..|.|.. ...+|+..++..+|-+.|+.|.--+. .. +.|.+-+++. ..+.-++.|+.+|.
T Consensus 109 v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIst---SE----i~IS~vV~~~---d~~~Av~aLH~~F~ 177 (200)
T 4go7_X 109 LLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIST---SE----IRISVLCRDT---ELDKAVVALHEAFG 177 (200)
T ss_dssp EEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEE---CS----SEEEEEEEGG---GHHHHHHHHHHHHT
T ss_pred EEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEc---cC----CEEEEEEeHH---HHHHHHHHHHHHhC
Confidence 34445555666655 45689999999999999888854432 12 2333334333 46778888888863
Done!