Query 037442
Match_columns 180
No_of_seqs 118 out of 1271
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 12:17:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 2.8E-35 6.1E-40 226.3 10.8 86 1-86 1-88 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 1.4E-35 3.1E-40 195.0 4.1 73 2-74 1-73 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 3.6E-32 7.7E-37 181.5 5.9 74 2-75 1-75 (83)
4 smart00432 MADS MADS domain. 100.0 5.8E-32 1.2E-36 168.1 4.8 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 3.9E-31 8.4E-36 164.6 4.0 59 2-60 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 6E-29 1.3E-33 149.7 1.1 51 9-59 1-51 (51)
7 KOG0015 Regulator of arginine 99.8 4.2E-21 9.1E-26 151.5 2.4 75 2-76 63-146 (338)
8 COG5068 ARG80 Regulator of arg 99.5 1.3E-14 2.8E-19 119.7 3.4 67 1-67 81-147 (412)
9 PF01486 K-box: K-box region; 98.1 1.9E-05 4.1E-10 54.3 8.0 65 98-167 13-77 (100)
10 PF07106 TBPIP: Tat binding pr 90.0 6.4 0.00014 29.3 11.0 65 92-165 74-138 (169)
11 PF10491 Nrf1_DNA-bind: NLS-bi 79.0 4.2 9.2E-05 31.5 4.5 45 27-71 36-87 (214)
12 PF10584 Proteasome_A_N: Prote 77.7 0.81 1.7E-05 22.7 0.2 13 44-56 4-16 (23)
13 COG3883 Uncharacterized protei 76.5 21 0.00045 28.9 8.0 35 138-172 79-113 (265)
14 PF15372 DUF4600: Domain of un 74.3 29 0.00064 24.9 9.4 66 96-162 7-77 (129)
15 PF06698 DUF1192: Protein of u 72.6 11 0.00024 23.2 4.4 32 130-161 15-46 (59)
16 PRK00736 hypothetical protein; 70.7 24 0.00052 22.3 5.9 38 86-123 15-52 (68)
17 PRK04098 sec-independent trans 69.7 14 0.00031 27.4 5.2 27 136-162 81-107 (158)
18 PRK00295 hypothetical protein; 69.6 25 0.00055 22.1 5.9 38 86-123 15-52 (68)
19 PRK04325 hypothetical protein; 68.8 28 0.0006 22.4 5.8 39 86-124 19-57 (74)
20 smart00787 Spc7 Spc7 kinetocho 68.5 61 0.0013 26.8 9.2 33 131-163 196-228 (312)
21 PF05852 DUF848: Gammaherpesvi 68.4 34 0.00074 25.1 6.8 31 133-163 83-113 (146)
22 PF04102 SlyX: SlyX; InterPro 65.6 26 0.00056 22.1 5.2 39 86-124 14-52 (69)
23 PRK02119 hypothetical protein; 65.3 33 0.00072 21.9 5.8 38 86-123 19-56 (73)
24 PRK04406 hypothetical protein; 65.0 35 0.00075 22.0 6.8 39 86-124 21-59 (75)
25 KOG4603 TBP-1 interacting prot 63.4 63 0.0014 24.5 9.0 63 92-163 81-143 (201)
26 PRK02793 phi X174 lysis protei 62.3 38 0.00083 21.6 5.8 38 86-123 18-55 (72)
27 KOG0804 Cytoplasmic Zn-finger 61.5 68 0.0015 28.0 8.3 32 89-120 381-412 (493)
28 PHA03155 hypothetical protein; 60.7 55 0.0012 22.9 8.1 51 99-154 10-60 (115)
29 PF05812 Herpes_BLRF2: Herpesv 60.1 58 0.0013 23.0 8.0 55 99-154 5-59 (118)
30 KOG4302 Microtubule-associated 59.9 1.2E+02 0.0027 27.8 10.1 35 129-163 150-184 (660)
31 cd00187 TOP4c DNA Topoisomeras 59.3 63 0.0014 28.2 8.0 61 7-73 257-328 (445)
32 PRK00846 hypothetical protein; 56.6 53 0.0011 21.4 6.0 39 86-124 23-61 (77)
33 COG3883 Uncharacterized protei 56.4 1.1E+02 0.0023 24.9 9.3 65 89-167 51-115 (265)
34 TIGR01916 F420_cofE F420-0:gam 55.8 13 0.00029 29.6 3.1 28 34-61 134-161 (243)
35 PF14282 FlxA: FlxA-like prote 55.2 66 0.0014 22.1 8.1 55 89-164 18-72 (106)
36 PF08317 Spc7: Spc7 kinetochor 55.1 1.2E+02 0.0026 25.1 9.4 30 133-162 203-232 (325)
37 PF09151 DUF1936: Domain of un 54.5 6.4 0.00014 20.9 0.7 27 35-61 3-31 (36)
38 PF11460 DUF3007: Protein of u 54.3 29 0.00064 23.9 4.1 17 133-149 87-103 (104)
39 PF04977 DivIC: Septum formati 54.2 51 0.0011 20.7 5.2 32 91-122 18-49 (80)
40 PF09941 DUF2173: Uncharacteri 50.6 11 0.00025 26.1 1.7 25 32-57 3-27 (108)
41 KOG3048 Molecular chaperone Pr 50.0 44 0.00096 24.5 4.7 33 131-163 8-40 (153)
42 KOG3335 Predicted coiled-coil 50.0 46 0.00099 25.2 4.9 36 85-120 101-136 (181)
43 COG5000 NtrY Signal transducti 49.6 13 0.00028 33.7 2.3 22 36-57 374-395 (712)
44 PF15079 DUF4546: Domain of un 49.6 1E+02 0.0023 23.2 6.7 32 133-164 76-107 (205)
45 PRK04863 mukB cell division pr 48.8 1.6E+02 0.0035 29.9 9.7 33 131-163 430-462 (1486)
46 PF04521 Viral_P18: ssRNA posi 48.3 96 0.0021 21.9 6.8 23 18-40 4-26 (120)
47 COG1938 Archaeal enzymes of AT 47.3 58 0.0013 26.1 5.4 10 64-73 194-203 (244)
48 PLN03230 acetyl-coenzyme A car 46.8 2E+02 0.0043 25.1 10.4 16 64-79 59-74 (431)
49 PF06657 Cep57_MT_bd: Centroso 46.4 80 0.0017 20.5 9.3 60 95-163 15-74 (79)
50 KOG4797 Transcriptional regula 46.2 99 0.0022 21.5 5.9 15 135-149 96-110 (123)
51 PF09403 FadA: Adhesion protei 45.5 44 0.00095 23.9 4.1 17 57-73 17-33 (126)
52 PRK00888 ftsB cell division pr 45.0 76 0.0016 21.8 5.1 31 91-121 28-58 (105)
53 PRK10803 tol-pal system protei 44.6 50 0.0011 26.6 4.8 39 33-72 10-48 (263)
54 PF05700 BCAS2: Breast carcino 44.3 1.5E+02 0.0033 23.1 8.1 66 91-163 98-163 (221)
55 KOG0432 Valyl-tRNA synthetase 43.9 36 0.00077 32.3 4.2 15 30-44 880-894 (995)
56 KOG1853 LIS1-interacting prote 43.1 69 0.0015 25.9 5.2 29 86-114 48-76 (333)
57 PHA02592 52 DNA topisomerase I 42.5 59 0.0013 28.3 5.2 43 26-73 285-327 (439)
58 PF10224 DUF2205: Predicted co 41.5 1E+02 0.0022 20.2 5.7 8 156-163 57-64 (80)
59 KOG0183 20S proteasome, regula 40.7 15 0.00032 28.8 1.1 16 41-56 4-19 (249)
60 PHA03161 hypothetical protein; 39.4 1.4E+02 0.003 22.0 5.9 31 133-163 83-113 (150)
61 COG2433 Uncharacterized conser 39.0 3.1E+02 0.0067 25.1 9.0 29 91-119 430-458 (652)
62 PF10883 DUF2681: Protein of u 38.9 1.2E+02 0.0025 20.3 5.9 50 91-140 24-73 (87)
63 PRK06851 hypothetical protein; 38.3 2.5E+02 0.0054 23.9 9.0 28 25-52 43-70 (367)
64 PRK11637 AmiB activator; Provi 37.6 2.6E+02 0.0057 23.9 8.7 72 86-171 71-142 (428)
65 PRK13293 F420-0--gamma-glutamy 37.5 38 0.00082 27.1 3.0 28 34-61 135-162 (245)
66 PF04120 Iron_permease: Low af 36.9 1.6E+02 0.0035 21.2 6.0 28 132-159 91-118 (132)
67 PRK01919 tatB sec-independent 36.9 1.8E+02 0.0039 21.9 6.3 10 43-52 15-24 (169)
68 PF06156 DUF972: Protein of un 36.1 1.4E+02 0.003 20.6 5.3 35 89-123 21-55 (107)
69 PRK10265 chaperone-modulator p 36.0 1E+02 0.0022 20.8 4.7 74 32-111 10-92 (101)
70 PF08172 CASP_C: CASP C termin 35.9 1.3E+02 0.0029 24.0 5.9 35 89-123 99-133 (248)
71 KOG0184 20S proteasome, regula 35.9 18 0.00038 28.5 0.9 22 36-57 3-24 (254)
72 smart00806 AIP3 Actin interact 34.3 96 0.0021 26.9 5.1 40 98-138 251-293 (426)
73 PF07438 DUF1514: Protein of u 34.2 1.2E+02 0.0026 19.0 5.5 43 101-155 22-64 (66)
74 PF08317 Spc7: Spc7 kinetochor 33.4 2.5E+02 0.0055 23.2 7.4 18 134-151 271-288 (325)
75 PF14193 DUF4315: Domain of un 33.3 1.4E+02 0.0031 19.6 7.4 16 135-150 47-62 (83)
76 PF04873 EIN3: Ethylene insens 33.0 14 0.00031 31.1 0.0 47 17-63 45-92 (354)
77 PF08702 Fib_alpha: Fibrinogen 32.9 1.9E+02 0.0042 21.0 6.5 30 62-106 23-52 (146)
78 TIGR02231 conserved hypothetic 32.9 3.5E+02 0.0075 23.9 10.8 18 135-152 123-140 (525)
79 cd01365 KISc_KIF1A_KIF1B Kines 32.2 47 0.001 27.8 3.0 36 26-61 70-111 (356)
80 PLN03229 acetyl-coenzyme A car 32.1 4.4E+02 0.0095 24.8 10.3 36 43-78 50-94 (762)
81 PF10168 Nup88: Nuclear pore c 32.1 4.3E+02 0.0093 24.7 12.1 76 85-163 634-709 (717)
82 PF10498 IFT57: Intra-flagella 31.8 1.7E+02 0.0037 24.8 6.2 24 139-162 301-324 (359)
83 PF14009 DUF4228: Domain of un 31.7 44 0.00095 24.4 2.5 34 39-72 12-46 (181)
84 PF14728 PHTB1_C: PTHB1 C-term 31.7 3.3E+02 0.0071 23.3 10.1 81 38-120 137-237 (377)
85 PF09177 Syntaxin-6_N: Syntaxi 31.7 1.6E+02 0.0034 19.6 7.3 52 101-156 43-94 (97)
86 PRK09413 IS2 repressor TnpA; R 31.4 1.5E+02 0.0033 20.5 5.1 35 94-128 75-109 (121)
87 PF07960 CBP4: CBP4; InterPro 31.4 33 0.00071 24.6 1.6 27 41-69 14-40 (128)
88 PF06020 Roughex: Drosophila r 30.8 23 0.00051 29.0 0.9 16 36-51 183-198 (334)
89 PF03112 DUF244: Uncharacteriz 30.8 1.1E+02 0.0024 22.5 4.3 79 90-172 77-156 (158)
90 PF04417 DUF501: Protein of un 30.4 2.1E+02 0.0046 20.7 6.5 35 39-73 7-47 (139)
91 PF07106 TBPIP: Tat binding pr 30.2 2.2E+02 0.0049 20.9 8.4 27 134-160 140-166 (169)
92 COG3096 MukB Uncharacterized p 30.1 5E+02 0.011 24.9 10.4 100 27-159 473-573 (1480)
93 TIGR02420 dksA RNA polymerase- 30.0 1.4E+02 0.0031 20.4 4.7 28 136-163 1-28 (110)
94 PRK00888 ftsB cell division pr 29.7 1.7E+02 0.0037 20.0 4.9 27 90-116 34-60 (105)
95 PRK04654 sec-independent trans 29.5 25 0.00053 27.5 0.8 11 42-52 14-24 (214)
96 KOG4252 GTP-binding protein [S 29.2 40 0.00087 26.0 1.8 28 39-72 91-118 (246)
97 PF08796 DUF1797: Protein of u 29.1 33 0.00071 21.7 1.1 19 39-57 24-42 (67)
98 TIGR03185 DNA_S_dndD DNA sulfu 28.9 4.3E+02 0.0094 24.1 8.8 32 138-169 261-295 (650)
99 PF09278 MerR-DNA-bind: MerR, 28.9 1.3E+02 0.0029 17.9 4.5 25 140-164 33-57 (65)
100 PRK09822 lipopolysaccharide co 28.8 53 0.0011 26.2 2.5 39 20-59 119-160 (269)
101 PF06005 DUF904: Protein of un 28.8 1.6E+02 0.0035 18.8 8.1 21 92-112 13-33 (72)
102 PF08657 DASH_Spc34: DASH comp 28.7 3.1E+02 0.0068 22.1 7.7 37 88-124 178-214 (259)
103 KOG4005 Transcription factor X 28.7 3.1E+02 0.0067 22.0 6.9 33 89-121 89-121 (292)
104 PHA03162 hypothetical protein; 28.4 2.3E+02 0.005 20.4 8.4 55 99-154 15-69 (135)
105 COG4717 Uncharacterized conser 28.3 5.5E+02 0.012 24.8 9.9 31 91-121 182-212 (984)
106 KOG2185 Predicted RNA-processi 28.3 3.2E+02 0.0068 23.8 7.1 63 95-172 411-473 (486)
107 PF10458 Val_tRNA-synt_C: Valy 28.1 1.3E+02 0.0028 18.5 3.8 20 99-118 6-25 (66)
108 PF05873 Mt_ATP-synt_D: ATP sy 28.1 1.8E+02 0.0039 21.6 5.2 15 131-145 126-140 (161)
109 COG4831 Roadblock/LC7 domain [ 27.6 81 0.0018 21.5 2.9 29 30-59 3-31 (109)
110 PF00843 Arena_nucleocap: Aren 27.4 1.7E+02 0.0037 25.6 5.4 25 133-157 88-112 (533)
111 PF11690 DUF3287: Protein of u 27.4 1.5E+02 0.0033 20.6 4.3 46 90-135 42-91 (109)
112 PF15603 Imm45: Immunity prote 27.3 96 0.0021 20.4 3.2 26 128-153 46-73 (82)
113 COG2900 SlyX Uncharacterized p 27.2 1.8E+02 0.0038 18.7 6.0 39 86-124 18-56 (72)
114 PF11853 DUF3373: Protein of u 27.2 71 0.0015 28.3 3.2 28 91-118 32-59 (489)
115 PF07989 Microtub_assoc: Micro 27.0 1.8E+02 0.0038 18.7 7.2 65 94-164 4-68 (75)
116 TIGR03752 conj_TIGR03752 integ 26.4 4.6E+02 0.0099 23.2 8.3 61 88-165 64-124 (472)
117 COG4917 EutP Ethanolamine util 26.3 58 0.0013 23.6 2.1 23 35-57 59-81 (148)
118 PF01166 TSC22: TSC-22/dip/bun 25.8 1.7E+02 0.0036 18.0 4.7 28 91-118 15-42 (59)
119 COG3411 Ferredoxin [Energy pro 25.6 62 0.0013 20.3 1.9 30 44-73 18-48 (64)
120 PF08181 DegQ: DegQ (SacQ) fam 25.3 1.4E+02 0.003 16.9 4.3 19 137-155 5-23 (46)
121 PF13252 DUF4043: Protein of u 25.2 36 0.00078 28.6 1.1 25 33-57 272-298 (341)
122 COG2433 Uncharacterized conser 25.2 5E+02 0.011 23.9 8.0 31 90-120 422-452 (652)
123 PF11232 Med25: Mediator compl 25.2 43 0.00094 24.7 1.4 19 37-55 109-127 (152)
124 PF13540 RCC1_2: Regulator of 24.7 25 0.00054 18.1 0.0 25 36-61 3-27 (30)
125 KOG0250 DNA repair protein RAD 24.7 6.8E+02 0.015 24.6 11.0 18 43-60 620-637 (1074)
126 cd02980 TRX_Fd_family Thioredo 24.6 53 0.0012 20.4 1.6 29 39-68 47-76 (77)
127 PF10623 PilI: Plasmid conjuga 24.2 1E+02 0.0022 20.2 2.7 32 42-73 8-42 (83)
128 PF03961 DUF342: Protein of un 23.6 4.8E+02 0.01 22.5 8.7 31 86-116 330-360 (451)
129 KOG4316 Uncharacterized conser 23.4 40 0.00088 24.7 0.9 42 33-74 43-95 (172)
130 TIGR03726 strep_RK_lipo putati 23.4 35 0.00077 18.5 0.5 16 29-44 3-18 (34)
131 COG5134 Uncharacterized conser 23.3 3.8E+02 0.0082 21.2 6.2 21 36-57 82-102 (272)
132 PHA02562 46 endonuclease subun 23.1 4.9E+02 0.011 22.9 7.9 28 46-73 133-163 (562)
133 PF11336 DUF3138: Protein of u 23.1 5.2E+02 0.011 22.7 7.9 27 134-164 78-104 (514)
134 PF02996 Prefoldin: Prefoldin 23.0 2.5E+02 0.0054 19.0 5.4 35 86-120 80-114 (120)
135 PF01996 F420_ligase: F420-0:G 22.8 22 0.00047 28.0 -0.7 29 33-61 141-169 (228)
136 KOG2856 Adaptor protein PACSIN 22.7 5E+02 0.011 22.4 9.3 31 133-163 171-201 (472)
137 COG5179 TAF1 Transcription ini 22.6 57 0.0012 29.8 1.8 43 26-69 446-488 (968)
138 PRK10884 SH3 domain-containing 22.4 3.7E+02 0.0081 20.8 7.6 25 88-112 91-115 (206)
139 PRK09555 feoA ferrous iron tra 22.3 1.1E+02 0.0024 19.5 2.7 32 26-57 20-51 (74)
140 PRK13294 F420-0--gamma-glutamy 22.1 90 0.0019 27.3 2.9 26 33-58 134-159 (448)
141 PF00383 dCMP_cyt_deam_1: Cyti 22.0 73 0.0016 20.9 2.0 28 27-54 6-37 (102)
142 cd01371 KISc_KIF3 Kinesin moto 22.0 95 0.0021 25.6 3.0 34 27-60 64-103 (333)
143 PF00804 Syntaxin: Syntaxin; 21.7 2.3E+02 0.0051 18.2 7.2 29 137-165 43-71 (103)
144 PRK07720 fliJ flagellar biosyn 21.5 3.1E+02 0.0067 19.5 9.4 69 93-162 19-87 (146)
145 cd01366 KISc_C_terminal Kinesi 21.4 93 0.002 25.5 2.8 33 27-59 61-98 (329)
146 COG4575 ElaB Uncharacterized c 21.3 2.9E+02 0.0062 19.1 7.6 29 134-162 32-60 (104)
147 PF06120 Phage_HK97_TLTM: Tail 21.3 4.8E+02 0.01 21.6 9.7 71 38-120 21-104 (301)
148 PF14916 CCDC92: Coiled-coil d 21.2 2.2E+02 0.0047 17.6 3.8 30 89-118 9-42 (60)
149 PHA00024 IX minor coat protein 21.2 61 0.0013 17.5 1.1 11 27-37 23-33 (33)
150 PF13591 MerR_2: MerR HTH fami 21.1 1.5E+02 0.0033 19.2 3.3 15 32-46 3-17 (84)
151 cd01368 KISc_KIF23_like Kinesi 21.1 96 0.0021 25.9 2.9 35 27-61 71-111 (345)
152 PF11944 DUF3461: Protein of u 21.1 1.5E+02 0.0034 21.0 3.4 25 138-162 101-125 (125)
153 PF06296 DUF1044: Protein of u 21.0 2.1E+02 0.0045 20.2 4.1 34 133-166 82-115 (120)
154 PRK13169 DNA replication intia 20.9 3E+02 0.0065 19.1 5.8 34 90-123 22-55 (110)
155 PF08557 Lipid_DES: Sphingolip 20.8 54 0.0012 18.4 0.9 21 22-42 16-36 (39)
156 COG1723 Uncharacterized conser 20.6 3.8E+02 0.0083 22.4 6.1 82 9-109 206-292 (331)
157 cd01370 KISc_KIP3_like Kinesin 20.6 98 0.0021 25.7 2.8 36 26-61 69-110 (338)
158 KOG2861 Uncharacterized conser 20.6 5E+02 0.011 22.4 7.0 77 14-109 278-359 (399)
159 PF14357 DUF4404: Domain of un 20.5 1.4E+02 0.0031 19.6 3.0 11 96-106 3-13 (85)
160 PF03670 UPF0184: Uncharacteri 20.5 2.2E+02 0.0047 18.8 3.8 28 89-116 25-52 (83)
161 PF15458 NTR2: Nineteen comple 20.3 4.5E+02 0.0098 21.0 7.5 50 57-118 201-250 (254)
162 cd01374 KISc_CENP_E Kinesin mo 20.0 1.1E+02 0.0024 25.0 3.0 35 26-60 55-95 (321)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=2.8e-35 Score=226.33 Aligned_cols=86 Identities=53% Similarity=0.892 Sum_probs=78.2
Q ss_pred CCccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCC--hhHHHHHhhccCCCCCC
Q 037442 1 MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS--VDVVVQRLLNWEMDPKD 78 (180)
Q Consensus 1 mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~ps--v~~Vl~ry~~~~~~~~~ 78 (180)
|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|.|++|+ |+.|+++|.....+...
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999987 99999999998776655
Q ss_pred CCCccchh
Q 037442 79 ETNSHVDA 86 (180)
Q Consensus 79 ~~~~~~e~ 86 (180)
+.....+.
T Consensus 81 ~~~~~~~~ 88 (195)
T KOG0014|consen 81 KKRVNLES 88 (195)
T ss_pred ccccchhh
Confidence 54443333
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=1.4e-35 Score=195.03 Aligned_cols=73 Identities=49% Similarity=0.846 Sum_probs=71.4
Q ss_pred CccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHhhccCC
Q 037442 2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNWEM 74 (180)
Q Consensus 2 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~~~~ 74 (180)
||+||+|++|+|+.+|++||+||++||||||+|||+||||+||+|||||+|++|+|++|++++|++||++.+.
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~ 73 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSG 73 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998864
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=3.6e-32 Score=181.46 Aligned_cols=74 Identities=49% Similarity=0.795 Sum_probs=70.6
Q ss_pred CccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCC-hhHHHHHhhccCCC
Q 037442 2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPS-VDVVVQRLLNWEMD 75 (180)
Q Consensus 2 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~ps-v~~Vl~ry~~~~~~ 75 (180)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+++.|++++ +.+++++|...+..
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~ 75 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSAL 75 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHh
Confidence 899999999999999999999999999999999999999999999999999999998877 99999999988753
No 4
>smart00432 MADS MADS domain.
Probab=99.97 E-value=5.8e-32 Score=168.13 Aligned_cols=59 Identities=63% Similarity=1.073 Sum_probs=58.1
Q ss_pred CccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCC
Q 037442 2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60 (180)
Q Consensus 2 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~p 60 (180)
||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||+|||||+|+++.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999987
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=3.9e-31 Score=164.56 Aligned_cols=59 Identities=61% Similarity=0.991 Sum_probs=57.7
Q ss_pred CccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCC
Q 037442 2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP 60 (180)
Q Consensus 2 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~p 60 (180)
||+||+|++|+|+..|++||+||+.||||||+|||+||||+||+|||||+|+++.|++|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 89999999999999999999999999999999999999999999999999999999876
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.95 E-value=6e-29 Score=149.74 Aligned_cols=51 Identities=53% Similarity=0.963 Sum_probs=46.5
Q ss_pred eEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCC
Q 037442 9 KMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGH 59 (180)
Q Consensus 9 k~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~ 59 (180)
|+|+|++.|++||+||+.||||||+|||+||||+||+|||||+|++|+|+|
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 589999999999999999999999999999999999999999999999975
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.81 E-value=4.2e-21 Score=151.51 Aligned_cols=75 Identities=39% Similarity=0.633 Sum_probs=68.6
Q ss_pred CccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCCh---------hHHHHHhhcc
Q 037442 2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSV---------DVVVQRLLNW 72 (180)
Q Consensus 2 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv---------~~Vl~ry~~~ 72 (180)
||+||+|++|+|+-.|.+||||||.||||||+|||||.|.+|-++|.|.+|.+|+|++|.. +++|..+++.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~ 142 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA 142 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999999999999999999863 4677777777
Q ss_pred CCCC
Q 037442 73 EMDP 76 (180)
Q Consensus 73 ~~~~ 76 (180)
+..+
T Consensus 143 pd~~ 146 (338)
T KOG0015|consen 143 PDTP 146 (338)
T ss_pred CCCC
Confidence 6543
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.49 E-value=1.3e-14 Score=119.71 Aligned_cols=67 Identities=36% Similarity=0.592 Sum_probs=63.1
Q ss_pred CCccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHH
Q 037442 1 MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQ 67 (180)
Q Consensus 1 mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ 67 (180)
|||+||.|.+|+|+.+|.|||+||+.||+|||.||++|.|.+|.++|.|..|..+.|+.|..+.|+.
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~ 147 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVK 147 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCccccccc
Confidence 7899999999999999999999999999999999999999999999999999999999987655543
No 9
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=98.13 E-value=1.9e-05 Score=54.33 Aligned_cols=65 Identities=23% Similarity=0.294 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 037442 98 QLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASSS 167 (180)
Q Consensus 98 ~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~~~~~ 167 (180)
.+..+..++..++..++.|+..+++..| .++++|+++||..|+..|+..+..|+.|+.++...+-
T Consensus 13 ~~e~~~~e~~~L~~~~~~L~~~~R~~~G-----edL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i 77 (100)
T PF01486_consen 13 QHEELQQEIAKLRKENESLQKELRHLMG-----EDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQI 77 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-----ccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 4555666666666677777777777765 4499999999999999999999999999999875543
No 10
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.02 E-value=6.4 Score=29.29 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037442 92 VEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEAS 165 (180)
Q Consensus 92 ~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~~~ 165 (180)
+..+..++..|++++..++.....+...+... ...++.+||..-...|+.-...+..|+..|..+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L---------~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASL---------SSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44455556666666666666666665555443 347788999999999988888899999888853
No 11
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=78.97 E-value=4.2 Score=31.48 Aligned_cols=45 Identities=22% Similarity=0.340 Sum_probs=33.9
Q ss_pred hhHHH----HHHHhhhcccceeEEeecCCC---CCcccCCCChhHHHHHhhc
Q 037442 27 GLFKK----ANELATLCAAHIAIVVFSPGG---KPFSFGHPSVDVVVQRLLN 71 (180)
Q Consensus 27 gL~KK----a~ELs~LC~v~vavivfsp~g---k~~~~~~psv~~Vl~ry~~ 71 (180)
-|+.| ..|++|-+|-.+.|++.+|+- ..-.||.-..+.|+..|..
T Consensus 36 rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~ 87 (214)
T PF10491_consen 36 RLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKP 87 (214)
T ss_pred HHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHH
Confidence 35555 479999999999999999953 1246888777777777754
No 12
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=77.65 E-value=0.81 Score=22.70 Aligned_cols=13 Identities=46% Similarity=0.927 Sum_probs=10.0
Q ss_pred eEEeecCCCCCcc
Q 037442 44 AIVVFSPGGKPFS 56 (180)
Q Consensus 44 avivfsp~gk~~~ 56 (180)
.+.+|||+|++|.
T Consensus 4 ~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 4 SITTFSPDGRLFQ 16 (23)
T ss_dssp STTSBBTTSSBHH
T ss_pred CceeECCCCeEEe
Confidence 3468999999864
No 13
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.53 E-value=21 Score=28.88 Aligned_cols=35 Identities=11% Similarity=0.290 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccc
Q 037442 138 LDELLHMKASLEKLRENLKSHIDDMEASSSLLLLK 172 (180)
Q Consensus 138 ~eeL~~l~~~Le~~~~~v~~r~~~l~~~~~~~~~~ 172 (180)
-.++..|...|+.+..+|.+|-+-|..+-..++..
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~n 113 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQELLKKRARAMQVN 113 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566666667766666666666555443333333
No 14
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=74.32 E-value=29 Score=24.89 Aligned_cols=66 Identities=12% Similarity=0.194 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHcCCccccc-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 96 NEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCK-----KSINDLGLDELLHMKASLEKLRENLKSHIDDM 162 (180)
Q Consensus 96 ~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~-----~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l 162 (180)
...|+-..+-++.+++....+++.+....+.. -+ ..++.|+.+.|..|...|+.-+..+...+...
T Consensus 7 ktRYEtQ~E~N~QLekqi~~l~~kiek~r~n~-~drl~siR~ye~Ms~~~l~~llkqLEkeK~~Le~qlk~~ 77 (129)
T PF15372_consen 7 KTRYETQLELNDQLEKQIIILREKIEKIRGNP-SDRLSSIRRYEQMSVESLNQLLKQLEKEKRSLENQLKDY 77 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ccccHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555443311 00 11488999999999999998888877777653
No 15
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=72.65 E-value=11 Score=23.19 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=24.9
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 130 KKSINDLGLDELLHMKASLEKLRENLKSHIDD 161 (180)
Q Consensus 130 ~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~ 161 (180)
+.+|+.||++||.+....|+.=...++..+..
T Consensus 15 g~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 15 GEDLSLLSVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred CCCchhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999998888766666655543
No 16
>PRK00736 hypothetical protein; Provisional
Probab=70.68 E-value=24 Score=22.27 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Q 037442 86 AEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAK 123 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~ 123 (180)
+|....++.||..+.+.+.+++.+.++...|...++..
T Consensus 15 afqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 15 AEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888999988888888888888888887766654
No 17
>PRK04098 sec-independent translocase; Provisional
Probab=69.74 E-value=14 Score=27.44 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 136 LGLDELLHMKASLEKLRENLKSHIDDM 162 (180)
Q Consensus 136 Ls~eeL~~l~~~Le~~~~~v~~r~~~l 162 (180)
++.++|.++...+....+.+..-+..+
T Consensus 81 ~~~eel~~~~~~~~~~~~~~~~~~~~~ 107 (158)
T PRK04098 81 LKFEELDDLKITAENEIKSIQDLLQDY 107 (158)
T ss_pred cChHHHHHHhhhhhhcchhHHHHHhhh
Confidence 677777777766666555555555444
No 18
>PRK00295 hypothetical protein; Provisional
Probab=69.58 E-value=25 Score=22.14 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Q 037442 86 AEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAK 123 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~ 123 (180)
+|....++.||..+.+.+.+++.++.....|...++..
T Consensus 15 a~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 15 AFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56678888888888888888888888877776666544
No 19
>PRK04325 hypothetical protein; Provisional
Probab=68.76 E-value=28 Score=22.35 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcC
Q 037442 86 AEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKG 124 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~ 124 (180)
+|....|+.||..+.+.+.+++.++.....|...++...
T Consensus 19 AfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 19 AFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567778888888888888888888877777766665543
No 20
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=68.54 E-value=61 Score=26.84 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=25.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 131 KSINDLGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 131 ~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
..+++++.++|..+...|......+......+.
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~ 228 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKLE 228 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348899999999999998888777766666543
No 21
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=68.42 E-value=34 Score=25.12 Aligned_cols=31 Identities=16% Similarity=0.446 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 133 INDLGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 133 l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
++.-.++++..|.+.+.++...+...++-+.
T Consensus 83 ~d~~kv~~~E~L~d~v~eLkeel~~el~~l~ 113 (146)
T PF05852_consen 83 FDRKKVEDLEKLTDRVEELKEELEFELERLQ 113 (146)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7778899999999999999999999999886
No 22
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=65.64 E-value=26 Score=22.08 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcC
Q 037442 86 AEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKG 124 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~ 124 (180)
+|....++.||..+...+.+++.++.....|...++...
T Consensus 14 a~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 14 AFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566778888888888888888888888877777665543
No 23
>PRK02119 hypothetical protein; Provisional
Probab=65.34 E-value=33 Score=21.94 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Q 037442 86 AEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAK 123 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~ 123 (180)
+|....++.||..+.+.+.+++.++.....|...++..
T Consensus 19 a~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 19 AFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677888888888888888888887777776666554
No 24
>PRK04406 hypothetical protein; Provisional
Probab=65.02 E-value=35 Score=22.02 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcC
Q 037442 86 AEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKG 124 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~ 124 (180)
+|....|+.||..+...+.+++.++.....|...++...
T Consensus 21 AfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 21 AFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567788888888888888888888888888877665543
No 25
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=63.43 E-value=63 Score=24.47 Aligned_cols=63 Identities=11% Similarity=0.275 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 92 VEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 92 ~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
...|..++..+.++++.++....-++..++... ..|+.++++.=...|..-..+.++|+.++.
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~---------s~Lt~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELS---------SALTTEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555444444444444332 256777777666666666666666666665
No 26
>PRK02793 phi X174 lysis protein; Provisional
Probab=62.34 E-value=38 Score=21.58 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Q 037442 86 AEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAK 123 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~ 123 (180)
+|....++.||+.+.+.+.+++.+......|...++..
T Consensus 18 afQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 18 AFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56667788888888888888877777777776665544
No 27
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.55 E-value=68 Score=28.00 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 037442 89 EAKVEQLNEQLIDLVNQLEIEKKRGEMLDKAL 120 (180)
Q Consensus 89 ~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~ 120 (180)
..+..+++.++.++++++..+++.++.|...+
T Consensus 381 e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq 412 (493)
T KOG0804|consen 381 ERKLQQLQTKLKKCQKELKEEREENKKLIKNQ 412 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 35666777788888888877777766665443
No 28
>PHA03155 hypothetical protein; Provisional
Probab=60.74 E-value=55 Score=22.92 Aligned_cols=51 Identities=20% Similarity=0.082 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 037442 99 LIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLREN 154 (180)
Q Consensus 99 ~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~ 154 (180)
+++|.+++.+++.+|+.|...++.... ++-.-|+..+=..+..+.-..+..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~~~-----p~d~~LT~~qKea~I~s~v~~Lt~ 60 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQHGN-----PEDELLTPAQKDAIINSLVNKLTK 60 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC-----CCccccCHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666655443 335679999988887766655443
No 29
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=60.12 E-value=58 Score=22.99 Aligned_cols=55 Identities=15% Similarity=0.016 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 037442 99 LIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLREN 154 (180)
Q Consensus 99 ~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~ 154 (180)
+++|.+++.+++.+|..|...++...++. -.++-.-|++.+=+.+..+.-..+..
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~p~-~~p~~~~LTp~qKe~~I~s~~~~Lss 59 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVGPG-PSPDDEVLTPAQKEAMITSAVSKLSS 59 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT----S-TT--B--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCC-CCCCccccChHHHHHHHHHHHHHHHH
Confidence 45666666677777777777777665411 12447789999988888766555443
No 30
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=59.88 E-value=1.2e+02 Score=27.83 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=29.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 129 CKKSINDLGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 129 w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
...+..+|+.+.|.+|...|..+.+.-..|++.+.
T Consensus 150 ~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~ 184 (660)
T KOG4302|consen 150 LIADESDLSLEKLEELREHLNELQKEKSDRLEKVL 184 (660)
T ss_pred cccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667899999999999999999988888877653
No 31
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=59.27 E-value=63 Score=28.18 Aligned_cols=61 Identities=33% Similarity=0.643 Sum_probs=36.4
Q ss_pred ceeEecCCcccc-hhh---hhcc-------chhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHhhccC
Q 037442 7 EMKMVKDSNSRQ-VTF---SKRR-------NGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNWE 73 (180)
Q Consensus 7 ~ik~I~n~~~R~-~tf---~KRr-------~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~~~ 73 (180)
.|.-|.++++|. +.| -||. .+|+|+ ..|.+--+ +-+++|.|+|+|..| ++.++|..|....
T Consensus 257 ~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~-t~L~~s~~--~Nm~~~~~~g~p~~~---~l~~iL~~f~~~R 328 (445)
T cd00187 257 GISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKV-TKLQTTFG--INMVAFDPNGRPKKL---NLKEILQEFLDHR 328 (445)
T ss_pred ccceeeeccCCCceEEEEEECCCccHHHHHHHHHHh-cCCceeee--eeEEEEecCCeeEEe---CHHHHHHHHHHHH
Confidence 456666776663 333 1222 244432 23333222 377788889998888 7889999887654
No 32
>PRK00846 hypothetical protein; Provisional
Probab=56.61 E-value=53 Score=21.38 Aligned_cols=39 Identities=21% Similarity=0.039 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcC
Q 037442 86 AEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKG 124 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~ 124 (180)
+|....++.||..+...+.+++.++.....|...++...
T Consensus 23 AfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 23 SFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667777777777777777777777666666655543
No 33
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.37 E-value=1.1e+02 Score=24.87 Aligned_cols=65 Identities=17% Similarity=0.304 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 037442 89 EAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASSS 167 (180)
Q Consensus 89 ~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~~~~~ 167 (180)
...++.|..++..++.+++..++++..+...++... .++..+...|......+..|.+.|.....
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~--------------~eI~~~~~~I~~r~~~l~~raRAmq~nG~ 115 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ--------------KEIAELKENIVERQELLKKRARAMQVNGT 115 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345556666666666666666666666655555443 34556777777777777777777764443
No 34
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=55.82 E-value=13 Score=29.59 Aligned_cols=28 Identities=21% Similarity=0.535 Sum_probs=23.8
Q ss_pred HHhhhcccceeEEeecCCCCCcccCCCC
Q 037442 34 ELATLCAAHIAIVVFSPGGKPFSFGHPS 61 (180)
Q Consensus 34 ELs~LC~v~vavivfsp~gk~~~~~~ps 61 (180)
+|.-.+|++|+|||+.+.|.||--|.+.
T Consensus 134 ~l~~~~g~~v~VIItDt~gr~~R~G~~g 161 (243)
T TIGR01916 134 GLRELTGVDVGVIITDTNGRPFREGQVG 161 (243)
T ss_pred HHHHHHCCCEEEEEECCCCCccccCCCC
Confidence 4566799999999999999998877665
No 35
>PF14282 FlxA: FlxA-like protein
Probab=55.21 E-value=66 Score=22.06 Aligned_cols=55 Identities=22% Similarity=0.339 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037442 89 EAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEA 164 (180)
Q Consensus 89 ~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~~ 164 (180)
...|..|+.++..|+.++..+. . -.+|+.++-..-...|..-+..+...|.++..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~--------------------~-~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELS--------------------Q-DSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------------c-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888887776542 0 24678888888888888877777777777653
No 36
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=55.12 E-value=1.2e+02 Score=25.08 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 133 INDLGLDELLHMKASLEKLRENLKSHIDDM 162 (180)
Q Consensus 133 l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l 162 (180)
++.++.++|..+...|......|..+...+
T Consensus 203 ~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l 232 (325)
T PF08317_consen 203 IESCDQEELEALRQELAEQKEEIEAKKKEL 232 (325)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999988887777766555444
No 37
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=54.47 E-value=6.4 Score=20.90 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=17.8
Q ss_pred HhhhcccceeEEeecCCCCC--cccCCCC
Q 037442 35 LATLCAAHIAIVVFSPGGKP--FSFGHPS 61 (180)
Q Consensus 35 Ls~LC~v~vavivfsp~gk~--~~~~~ps 61 (180)
|+--|||-|-+-||...|.. |-.+.|.
T Consensus 3 lcpkcgvgvl~pvy~~kgeikvfrcsnpa 31 (36)
T PF09151_consen 3 LCPKCGVGVLEPVYNQKGEIKVFRCSNPA 31 (36)
T ss_dssp B-TTTSSSBEEEEE-TTS-EEEEEES-TT
T ss_pred cCCccCceEEEEeecCCCcEEEEEcCCCc
Confidence 66779999999999999964 4334453
No 38
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=54.32 E-value=29 Score=23.90 Aligned_cols=17 Identities=29% Similarity=0.560 Sum_probs=15.1
Q ss_pred CCCCCHHHHHHHHHHHH
Q 037442 133 INDLGLDELLHMKASLE 149 (180)
Q Consensus 133 l~~Ls~eeL~~l~~~Le 149 (180)
++.|+++|+..|...++
T Consensus 87 le~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 87 LEELSPEELEALQAEIE 103 (104)
T ss_pred HHhCCHHHHHHHHHHhc
Confidence 78999999999988776
No 39
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=54.23 E-value=51 Score=20.65 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 037442 91 KVEQLNEQLIDLVNQLEIEKKRGEMLDKALKA 122 (180)
Q Consensus 91 ~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~ 122 (180)
....++.++..++.+++.++.++..|...+..
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666555443
No 40
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=50.55 E-value=11 Score=26.15 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=19.9
Q ss_pred HHHHhhhcccceeEEeecCCCCCccc
Q 037442 32 ANELATLCAAHIAIVVFSPGGKPFSF 57 (180)
Q Consensus 32 a~ELs~LC~v~vavivfsp~gk~~~~ 57 (180)
-.+|-.|-||- |+..||++|++.+|
T Consensus 3 l~~Lm~lpGv~-AAg~Fs~~G~l~e~ 27 (108)
T PF09941_consen 3 LDKLMKLPGVV-AAGEFSDDGKLVEY 27 (108)
T ss_pred HHHhhcCCCeE-EEEEECCCCeEEee
Confidence 46778888885 55889999998877
No 41
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=50.03 E-value=44 Score=24.48 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=27.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 131 KSINDLGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 131 ~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
-++..|++++|.++...++.-++.+..-+++|.
T Consensus 8 idltkLsleQL~~lk~q~dqEl~~lq~Sl~~L~ 40 (153)
T KOG3048|consen 8 IDLTKLSLEQLGALKKQFDQELNFLQDSLNALK 40 (153)
T ss_pred CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999988887777777665
No 42
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=50.01 E-value=46 Score=25.24 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 037442 85 DAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKAL 120 (180)
Q Consensus 85 e~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~ 120 (180)
|..+...+.+|..++.+|.++++.+++....|...+
T Consensus 101 ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l 136 (181)
T KOG3335|consen 101 EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKL 136 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888899999998888888888776443
No 43
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=49.58 E-value=13 Score=33.73 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.5
Q ss_pred hhhcccceeEEeecCCCCCccc
Q 037442 36 ATLCAAHIAIVVFSPGGKPFSF 57 (180)
Q Consensus 36 s~LC~v~vavivfsp~gk~~~~ 57 (180)
|+|.|+-++||+|.++|..+.+
T Consensus 374 ~VLsgvtaGVi~~d~~g~i~t~ 395 (712)
T COG5000 374 AVLSGLTAGVIGFDNRGCITTV 395 (712)
T ss_pred HHHhcCceeEEEEcCCCeeEee
Confidence 6999999999999999876664
No 44
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=49.57 E-value=1e+02 Score=23.18 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037442 133 INDLGLDELLHMKASLEKLRENLKSHIDDMEA 164 (180)
Q Consensus 133 l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~~ 164 (180)
|-+-+.+-|.+|.....+..+...++++-|.-
T Consensus 76 iMDKDFDKL~EFVEIMKeMQkDMDEKMDvLiN 107 (205)
T PF15079_consen 76 IMDKDFDKLHEFVEIMKEMQKDMDEKMDVLIN 107 (205)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhHHHhhhHHhh
Confidence 55667888999999999988888888887653
No 45
>PRK04863 mukB cell division protein MukB; Provisional
Probab=48.77 E-value=1.6e+02 Score=29.92 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=24.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 131 KSINDLGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 131 ~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
+.+.+|+.++|..+...++.........+..+.
T Consensus 430 ~~~~~~SdEeLe~~LenF~aklee~e~qL~elE 462 (1486)
T PRK04863 430 CGLPDLTADNAEDWLEEFQAKEQEATEELLSLE 462 (1486)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347799999999888888777776666665544
No 46
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=48.30 E-value=96 Score=21.94 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=18.3
Q ss_pred chhhhhccchhHHHHHHHhhhcc
Q 037442 18 QVTFSKRRNGLFKKANELATLCA 40 (180)
Q Consensus 18 ~~tf~KRr~gL~KKa~ELs~LC~ 40 (180)
-.+|+|+|..+++|-..-.+-|.
T Consensus 4 ~~~~rk~R~~~y~~lgl~~vkC~ 26 (120)
T PF04521_consen 4 FRCVRKYRASVYKKLGLSAVKCR 26 (120)
T ss_pred hHHHHHHHHHHHHHcCCeeeeec
Confidence 46899999999999887665443
No 47
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=47.28 E-value=58 Score=26.05 Aligned_cols=10 Identities=10% Similarity=0.361 Sum_probs=5.7
Q ss_pred HHHHHhhccC
Q 037442 64 VVVQRLLNWE 73 (180)
Q Consensus 64 ~Vl~ry~~~~ 73 (180)
.++++-.+.+
T Consensus 194 e~lnk~~~l~ 203 (244)
T COG1938 194 EALNKMLGLN 203 (244)
T ss_pred HHHHHHhcCc
Confidence 4566665554
No 48
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=46.77 E-value=2e+02 Score=25.09 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=10.8
Q ss_pred HHHHHhhccCCCCCCC
Q 037442 64 VVVQRLLNWEMDPKDE 79 (180)
Q Consensus 64 ~Vl~ry~~~~~~~~~~ 79 (180)
..+.+|.-..+.+++.
T Consensus 59 ~~~~~~~~~~~~~~~~ 74 (431)
T PLN03230 59 KILNRFKPLKNKPKPV 74 (431)
T ss_pred HHHHhcCCCCCCCCCC
Confidence 4788887777665543
No 49
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=46.43 E-value=80 Score=20.49 Aligned_cols=60 Identities=22% Similarity=0.286 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 95 LNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 95 l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
|..-+..|+.|+..++.....|+...+... ..++...-..|...|+.+.+.+..+-+++.
T Consensus 15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d---------~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~ 74 (79)
T PF06657_consen 15 LSEVLKALQDEFGHMKMEHQELQDEYKQMD---------PSLGRRKRRDLEQELEELVKRMEAKADQIY 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------cccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666676666666666655554432 356778888899999999999888887764
No 50
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=46.22 E-value=99 Score=21.51 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHHHHH
Q 037442 135 DLGLDELLHMKASLE 149 (180)
Q Consensus 135 ~Ls~eeL~~l~~~Le 149 (180)
..+.++|.+|...+.
T Consensus 96 ~~spe~L~ql~~~~~ 110 (123)
T KOG4797|consen 96 LASPEQLAQLPAQLS 110 (123)
T ss_pred hCCHHHHHHHHHhcc
Confidence 347788887776553
No 51
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=45.45 E-value=44 Score=23.89 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=6.5
Q ss_pred cCCCChhHHHHHhhccC
Q 037442 57 FGHPSVDVVVQRLLNWE 73 (180)
Q Consensus 57 ~~~psv~~Vl~ry~~~~ 73 (180)
|+.|...+|..++.+..
T Consensus 17 faA~~~~~v~~~l~~LE 33 (126)
T PF09403_consen 17 FAATATASVESELNQLE 33 (126)
T ss_dssp ------HHHHHHHHHHH
T ss_pred HHcccchHHHHHHHHHH
Confidence 44455566666665543
No 52
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=45.01 E-value=76 Score=21.77 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 037442 91 KVEQLNEQLIDLVNQLEIEKKRGEMLDKALK 121 (180)
Q Consensus 91 ~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~ 121 (180)
....++.++..++.+++.++.++..|...+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666665544
No 53
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=44.56 E-value=50 Score=26.55 Aligned_cols=39 Identities=23% Similarity=0.166 Sum_probs=19.0
Q ss_pred HHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHhhcc
Q 037442 33 NELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNW 72 (180)
Q Consensus 33 ~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~~ 72 (180)
-=|+.|++|-+...++.|.. +...+++++++=+.+....
T Consensus 10 ~~~~~l~~~~~~~~~~a~a~-v~~~~~~~~~~r~~~le~~ 48 (263)
T PRK10803 10 LSLSLLVGVAAPWAAFAQAP-ISSVGSGSVEDRVTQLERI 48 (263)
T ss_pred HHHHHHHHHhhhHHHhcCCc-HHHcCCCchHHHHHHHHHH
Confidence 34567777655444444431 1122345555555555443
No 54
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=44.34 E-value=1.5e+02 Score=23.06 Aligned_cols=66 Identities=30% Similarity=0.343 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 91 KVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 91 ~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
.+..|..-+......++....+...|+ .+..++...|- ...+.|..+...|+..+..++..++.+.
T Consensus 98 d~~~w~~al~na~a~lehq~~R~~NLe-Ll~~~g~naW~------~~n~~Le~~~~~le~~l~~~k~~ie~vN 163 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRLENLE-LLSKYGENAWL------IHNEQLEAMLKRLEKELAKLKKEIEEVN 163 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666555555553 33444445542 3347777777777777777777766553
No 55
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=43.86 E-value=36 Score=32.28 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=10.3
Q ss_pred HHHHHHhhhccccee
Q 037442 30 KKANELATLCAAHIA 44 (180)
Q Consensus 30 KKa~ELs~LC~v~va 44 (180)
--+.++++||.++.-
T Consensus 880 ~~~~~i~~l~~~~~v 894 (995)
T KOG0432|consen 880 EFLDEISTLTNLELV 894 (995)
T ss_pred HHHHHHHHhhcccee
Confidence 356788888877543
No 56
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=43.06 E-value=69 Score=25.88 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037442 86 AEQEAKVEQLNEQLIDLVNQLEIEKKRGE 114 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~l~~el~~~k~~~~ 114 (180)
+.....+..+..+..+++.++..++-+.+
T Consensus 48 aelesqL~q~etrnrdl~t~nqrl~~E~e 76 (333)
T KOG1853|consen 48 AELESQLDQLETRNRDLETRNQRLTTEQE 76 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544443333
No 57
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=42.46 E-value=59 Score=28.33 Aligned_cols=43 Identities=14% Similarity=0.245 Sum_probs=28.5
Q ss_pred chhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHhhccC
Q 037442 26 NGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNWE 73 (180)
Q Consensus 26 ~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~~~ 73 (180)
.+|+|+ ..|.+ -..+-+++|+++|+|..| .++.+||..|....
T Consensus 285 ~~L~k~-~~L~~--~~~~Nm~~~d~~g~~~~~--~~~~~Il~~f~~~R 327 (439)
T PHA02592 285 EKIMKD-FGLIE--RVSQNITVINENGKLKVY--ENAEDLIRDFVEIR 327 (439)
T ss_pred HHHHHh-cCchh--eeeeeEEEEecCCeeeec--CCHHHHHHHHHHHH
Confidence 456654 23332 234778889999988777 56888888886543
No 58
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=41.54 E-value=1e+02 Score=20.22 Aligned_cols=8 Identities=13% Similarity=0.277 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 037442 156 KSHIDDME 163 (180)
Q Consensus 156 ~~r~~~l~ 163 (180)
+..|..|+
T Consensus 57 q~YI~nLm 64 (80)
T PF10224_consen 57 QQYIGNLM 64 (80)
T ss_pred HHHHHHHH
Confidence 33444443
No 59
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.65 E-value=15 Score=28.80 Aligned_cols=16 Identities=44% Similarity=0.696 Sum_probs=12.5
Q ss_pred cceeEEeecCCCCCcc
Q 037442 41 AHIAIVVFSPGGKPFS 56 (180)
Q Consensus 41 v~vavivfsp~gk~~~ 56 (180)
-+-|+-||||+|.+|.
T Consensus 4 ydraltvFSPDGhL~Q 19 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQ 19 (249)
T ss_pred cccceEEECCCCCEEe
Confidence 3567889999998764
No 60
>PHA03161 hypothetical protein; Provisional
Probab=39.44 E-value=1.4e+02 Score=22.03 Aligned_cols=31 Identities=13% Similarity=0.321 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 133 INDLGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 133 l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
++---++.+..|.+.++++...+.-.++-+.
T Consensus 83 fd~kkl~~~E~L~drv~eLkeel~~ELe~l~ 113 (150)
T PHA03161 83 FDRHKLSAAEDLQDKILELKEDIHFEIEALN 113 (150)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555678888899999999999999998886
No 61
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=39.04 E-value=3.1e+02 Score=25.13 Aligned_cols=29 Identities=34% Similarity=0.391 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 037442 91 KVEQLNEQLIDLVNQLEIEKKRGEMLDKA 119 (180)
Q Consensus 91 ~~~~l~~~~~~l~~el~~~k~~~~~l~~~ 119 (180)
.++.|..+...|+.+++.+++.+++|...
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~ 458 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESE 458 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 62
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=38.89 E-value=1.2e+02 Score=20.25 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHH
Q 037442 91 KVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDE 140 (180)
Q Consensus 91 ~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~ee 140 (180)
++..++.+..+|+++++.++.+....+..++.+....=-++....+|.+.
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~~sr~~ 73 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRRLSRDS 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCHHH
Confidence 44555556666666666555555555555554433221234466666555
No 63
>PRK06851 hypothetical protein; Provisional
Probab=38.34 E-value=2.5e+02 Score=23.88 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=21.7
Q ss_pred cchhHHHHHHHhhhcccceeEEeecCCC
Q 037442 25 RNGLFKKANELATLCAAHIAIVVFSPGG 52 (180)
Q Consensus 25 r~gL~KKa~ELs~LC~v~vavivfsp~g 52 (180)
+.+|++++.+-..-+|-+|..++.++++
T Consensus 43 KStl~~~i~~~~~~~g~~Ve~~~~~~d~ 70 (367)
T PRK06851 43 KSTLMKKIGEEFLEKGYDVEFLHCSSDN 70 (367)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 5668888777777789999988887764
No 64
>PRK11637 AmiB activator; Provisional
Probab=37.63 E-value=2.6e+02 Score=23.93 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037442 86 AEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEAS 165 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~~~ 165 (180)
......+..++.++..+..++...+.....++..+ .-..+++..+...|+.....+..++..+...
T Consensus 71 ~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei--------------~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~ 136 (428)
T PRK11637 71 ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQI--------------DELNASIAKLEQQQAAQERLLAAQLDAAFRQ 136 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q ss_pred chhccc
Q 037442 166 SSLLLL 171 (180)
Q Consensus 166 ~~~~~~ 171 (180)
....++
T Consensus 137 g~~~~l 142 (428)
T PRK11637 137 GEHTGL 142 (428)
T ss_pred CCCcHH
No 65
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=37.54 E-value=38 Score=27.10 Aligned_cols=28 Identities=21% Similarity=0.557 Sum_probs=23.0
Q ss_pred HHhhhcccceeEEeecCCCCCcccCCCC
Q 037442 34 ELATLCAAHIAIVVFSPGGKPFSFGHPS 61 (180)
Q Consensus 34 ELs~LC~v~vavivfsp~gk~~~~~~ps 61 (180)
+|.-.||++|+|||....|.||-.|...
T Consensus 135 ~l~~~~g~~v~VIItDt~gr~~R~G~t~ 162 (245)
T PRK13293 135 GLEELTGKKVGVIITDTNGRPFRKGQRG 162 (245)
T ss_pred HHHHHHCCCEEEEEEcCCCcccccCCcc
Confidence 4566799999999999999988776544
No 66
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=36.93 E-value=1.6e+02 Score=21.21 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 037442 132 SINDLGLDELLHMKASLEKLRENLKSHI 159 (180)
Q Consensus 132 ~l~~Ls~eeL~~l~~~Le~~~~~v~~r~ 159 (180)
++++++.+||.++...++..-...+.+.
T Consensus 91 ~iE~l~~~el~~~~~~~~~~~~~~~~~~ 118 (132)
T PF04120_consen 91 DIEDLTEEELEEIRKRYERLAEQARERH 118 (132)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 4999999999999999988766655443
No 67
>PRK01919 tatB sec-independent translocase; Provisional
Probab=36.87 E-value=1.8e+02 Score=21.93 Aligned_cols=10 Identities=40% Similarity=0.743 Sum_probs=8.3
Q ss_pred eeEEeecCCC
Q 037442 43 IAIVVFSPGG 52 (180)
Q Consensus 43 vavivfsp~g 52 (180)
||+|||+|..
T Consensus 15 VALiV~GPek 24 (169)
T PRK01919 15 VALVVIGPER 24 (169)
T ss_pred HHHheeCchH
Confidence 8899999954
No 68
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.08 E-value=1.4e+02 Score=20.60 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Q 037442 89 EAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAK 123 (180)
Q Consensus 89 ~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~ 123 (180)
...+..|..++..|.+|+..++.++..|.+.+...
T Consensus 21 ~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 21 LEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777777777766543
No 69
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=36.03 E-value=1e+02 Score=20.83 Aligned_cols=74 Identities=15% Similarity=0.151 Sum_probs=35.4
Q ss_pred HHHHhhhcccceeEE-------eecCCCC-CcccCCCC-hhHHHHHhhccCCCCCCCCCccchhHHHHHHHHHHHHHHHH
Q 037442 32 ANELATLCAAHIAIV-------VFSPGGK-PFSFGHPS-VDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDL 102 (180)
Q Consensus 32 a~ELs~LC~v~vavi-------vfsp~gk-~~~~~~ps-v~~Vl~ry~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~l 102 (180)
..|||..||++...| ++.|.+. +-.|..++ .-.++.+....... .......-.-+..|-++++.|
T Consensus 10 ~~Elc~~~gi~~~~l~eLve~GlIep~~~~~~~~~F~~~~l~r~~~a~rL~~d------l~in~~gialvl~LLd~i~~L 83 (101)
T PRK10265 10 ITEFCLHTGVSEEELNEIVGLGVIEPREIQETTWVFDDHAAIVVQRAVRLRHE------LALDWPGIAVALTLLDEIAHL 83 (101)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCeecCCCCcccceECHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHH
Confidence 478999999876655 3334332 22332232 12333333332210 000111223455666677777
Q ss_pred HHHHHHHHH
Q 037442 103 VNQLEIEKK 111 (180)
Q Consensus 103 ~~el~~~k~ 111 (180)
+.++..+++
T Consensus 84 r~el~~L~~ 92 (101)
T PRK10265 84 KQENRLLRQ 92 (101)
T ss_pred HHHHHHHHH
Confidence 777666654
No 70
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=35.92 E-value=1.3e+02 Score=24.01 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Q 037442 89 EAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAK 123 (180)
Q Consensus 89 ~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~ 123 (180)
...+..+..++..|+.|++.++..|.+|-+.++..
T Consensus 99 E~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 99 EEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667778888888888888888887764
No 71
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=35.91 E-value=18 Score=28.53 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=17.4
Q ss_pred hhhcccceeEEeecCCCCCccc
Q 037442 36 ATLCAAHIAIVVFSPGGKPFSF 57 (180)
Q Consensus 36 s~LC~v~vavivfsp~gk~~~~ 57 (180)
||=.|-+.|+-+|||+|+.|+-
T Consensus 3 sIGtGyDls~s~fSpdGrvfQv 24 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQV 24 (254)
T ss_pred cccccccccceeeCCCCceehH
Confidence 3446778999999999988753
No 72
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=34.26 E-value=96 Score=26.91 Aligned_cols=40 Identities=13% Similarity=0.231 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCccc---ccCCCCCCCH
Q 037442 98 QLIDLVNQLEIEKKRGEMLDKALKAKGLSKY---CKKSINDLGL 138 (180)
Q Consensus 98 ~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~---w~~~l~~Ls~ 138 (180)
|++.+.+++....+....++..+.... +.| |+..++..-.
T Consensus 251 qLe~v~kdi~~a~keL~~m~~~i~~eK-P~WkKiWE~EL~~VcE 293 (426)
T smart00806 251 QLETVQKELETARKELKKMEEYIDIEK-PIWKKIWEAELDKVCE 293 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC-hHHHHHHHHHHHHHHH
Confidence 344444555666666666666665544 456 8876665543
No 73
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=34.23 E-value=1.2e+02 Score=19.00 Aligned_cols=43 Identities=19% Similarity=0.387 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 037442 101 DLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENL 155 (180)
Q Consensus 101 ~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v 155 (180)
.++++++.++--+.-|...+ +.+-+.++|.+++..+++..+.+
T Consensus 22 ~lr~eiealkY~N~yL~~~~------------v~~~g~~gl~~~~~e~~r~~~~~ 64 (66)
T PF07438_consen 22 ELRKEIEALKYMNDYLFDQF------------VRDNGYEGLEEYEIEIERIKKDF 64 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------hhccCcchHHHHHHHHHHHHHHh
Confidence 34455556555555554333 55667788888888888776654
No 74
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=33.38 E-value=2.5e+02 Score=23.18 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=9.3
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 037442 134 NDLGLDELLHMKASLEKL 151 (180)
Q Consensus 134 ~~Ls~eeL~~l~~~Le~~ 151 (180)
.+.+..|+..|...++.+
T Consensus 271 r~~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 271 RGWTRSEVKRLKAKVDAL 288 (325)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 344555555555555443
No 75
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=33.26 E-value=1.4e+02 Score=19.61 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=12.7
Q ss_pred CCCHHHHHHHHHHHHH
Q 037442 135 DLGLDELLHMKASLEK 150 (180)
Q Consensus 135 ~Ls~eeL~~l~~~Le~ 150 (180)
+|++++|..|......
T Consensus 47 ~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 47 KMTPEELAAFLRAMKS 62 (83)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 7899999988776654
No 76
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=32.98 E-value=14 Score=31.11 Aligned_cols=47 Identities=28% Similarity=0.417 Sum_probs=0.0
Q ss_pred cchhhhhccchhHHHHHHHhhhcccceeE-EeecCCCCCcccCCCChh
Q 037442 17 RQVTFSKRRNGLFKKANELATLCAAHIAI-VVFSPGGKPFSFGHPSVD 63 (180)
Q Consensus 17 R~~tf~KRr~gL~KKa~ELs~LC~v~vav-ivfsp~gk~~~~~~psv~ 63 (180)
|+.+-+.=..||+|=+.=..-+|+|.-+| -+.+..|+|.+|++||..
T Consensus 45 ~kr~~s~aqd~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~slr 92 (354)
T PF04873_consen 45 RKRKMSRAQDGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPSLR 92 (354)
T ss_dssp ------------------------------------------------
T ss_pred HhhhhhhhhhHHHHhhccccccccCceeeecCCCCCCCccCCcCCccc
Confidence 33334444567777777778999999999 777888999999999965
No 77
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=32.94 E-value=1.9e+02 Score=21.02 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=18.3
Q ss_pred hhHHHHHhhccCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 037442 62 VDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQL 106 (180)
Q Consensus 62 v~~Vl~ry~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~l~~el 106 (180)
+...|.+|.... ..++++|...+..+.+.-
T Consensus 23 i~~~L~k~~~~v---------------~~~i~~L~~~L~~~~n~t 52 (146)
T PF08702_consen 23 IQDFLDKYERDV---------------DKDIQELENLLDQISNST 52 (146)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccch---------------HHHHHHHHHHHHHHHHhh
Confidence 888888885543 335555555555555443
No 78
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.93 E-value=3.5e+02 Score=23.91 Aligned_cols=18 Identities=11% Similarity=-0.088 Sum_probs=10.2
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 037442 135 DLGLDELLHMKASLEKLR 152 (180)
Q Consensus 135 ~Ls~eeL~~l~~~Le~~~ 152 (180)
..++.++.++...+..-+
T Consensus 123 ~~~~~~~~~~~~~~~~~~ 140 (525)
T TIGR02231 123 EPDLKEWFQAFDFNGSEI 140 (525)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 456677766665444333
No 79
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=32.23 E-value=47 Score=27.75 Aligned_cols=36 Identities=17% Similarity=0.462 Sum_probs=25.3
Q ss_pred chhHHHHH-HH--hhhcccceeEEeecCCC--CCcc-cCCCC
Q 037442 26 NGLFKKAN-EL--ATLCAAHIAIVVFSPGG--KPFS-FGHPS 61 (180)
Q Consensus 26 ~gL~KKa~-EL--s~LC~v~vavivfsp~g--k~~~-~~~ps 61 (180)
.-+|+.+. .+ +++-|..+||++|+++| |-|+ ||.+.
T Consensus 70 ~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~ 111 (356)
T cd01365 70 EDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKE 111 (356)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCC
Confidence 45666653 22 57889999999999976 6553 56654
No 80
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=32.11 E-value=4.4e+02 Score=24.83 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=18.2
Q ss_pred eeEEeecCCCCCcccCCCC-----hh----HHHHHhhccCCCCCC
Q 037442 43 IAIVVFSPGGKPFSFGHPS-----VD----VVVQRLLNWEMDPKD 78 (180)
Q Consensus 43 vavivfsp~gk~~~~~~ps-----v~----~Vl~ry~~~~~~~~~ 78 (180)
+.|+.--..|+-+.|+||. +. ..+.+|......+++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (762)
T PLN03229 50 LAVVAKIRKGKKHEYPWPADPDPNVKGGVLSYLSHFKPLKEKPKP 94 (762)
T ss_pred eEEEeeeccccccCCCCCCCCCCCcccchhhHhhccCCCCCCCCC
Confidence 4444444456555555543 43 455666555544443
No 81
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=32.06 E-value=4.3e+02 Score=24.71 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 85 DAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 85 e~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
|-.....++.++.++..|+..++..+++....+..+...... ..+-..|+..|...+.+.|...-..|++-+.++.
T Consensus 634 Er~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~---~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik 709 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSP---KKKSIVLSESQKRTIKEILKQQGEEIDELVKQIK 709 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456677777788888888877776666544333311111 1234579999999999999887777777777654
No 82
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=31.81 E-value=1.7e+02 Score=24.82 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 139 DELLHMKASLEKLRENLKSHIDDM 162 (180)
Q Consensus 139 eeL~~l~~~Le~~~~~v~~r~~~l 162 (180)
.+|.++...|+..+..+.+|-..|
T Consensus 301 ~~L~~IseeLe~vK~emeerg~~m 324 (359)
T PF10498_consen 301 RELAEISEELEQVKQEMEERGSSM 324 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 445566666666665555554443
No 83
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=31.69 E-value=44 Score=24.35 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=24.4
Q ss_pred cccceeEEeecCCCCCcccCCC-ChhHHHHHhhcc
Q 037442 39 CAAHIAIVVFSPGGKPFSFGHP-SVDVVVQRLLNW 72 (180)
Q Consensus 39 C~v~vavivfsp~gk~~~~~~p-sv~~Vl~ry~~~ 72 (180)
|+...++-|..++|+...|..| .+.+|+..|=..
T Consensus 12 ~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h 46 (181)
T PF14009_consen 12 SSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGH 46 (181)
T ss_pred cCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCC
Confidence 3444444455588999999888 699999888544
No 84
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=31.67 E-value=3.3e+02 Score=23.25 Aligned_cols=81 Identities=11% Similarity=0.133 Sum_probs=39.4
Q ss_pred hc--ccceeEEeecCCCCCccc-------CCCChhHHHHHhhccCCCCCCC-------C--CccchhHH--HHHHHHHHH
Q 037442 38 LC--AAHIAIVVFSPGGKPFSF-------GHPSVDVVVQRLLNWEMDPKDE-------T--NSHVDAEQ--EAKVEQLNE 97 (180)
Q Consensus 38 LC--~v~vavivfsp~gk~~~~-------~~psv~~Vl~ry~~~~~~~~~~-------~--~~~~e~~~--~~~~~~l~~ 97 (180)
+| |..|.|++-..+++ |-. -|+=+..++.|.....+....+ . .+. +.+. -+...++..
T Consensus 137 ~~~~g~~VTIlask~s~R-YRIQSd~~e~l~lv~~eLi~Rl~~~~~~~~~~~~~~~~~~~~lPl-~~~~~~id~H~~lr~ 214 (377)
T PF14728_consen 137 LNGSGSVVTILASKTSNR-YRIQSDSFEALWLVLEELIRRLKEHFPKQGVKDRFKISFSGPLPL-QEYFEIIDQHFELRQ 214 (377)
T ss_pred eecCCceEEEEEecCCcE-EEEEcCCHhHHHHHHHHHHHHHHHhccccCcccceEEecCCCCcH-HHHHHHHHHHHHHHH
Confidence 45 77777777655553 211 1222567777776544321110 0 111 2221 244455555
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 037442 98 QLIDLVNQLEIEKKRGEMLDKAL 120 (180)
Q Consensus 98 ~~~~l~~el~~~k~~~~~l~~~~ 120 (180)
++.++.+++...-.+...+++.+
T Consensus 215 ~~~~~~~~L~~~a~QfRaIQrrl 237 (377)
T PF14728_consen 215 ELKELEEELDERAQQFRAIQRRL 237 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655555555555443
No 85
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=31.65 E-value=1.6e+02 Score=19.58 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 037442 101 DLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLK 156 (180)
Q Consensus 101 ~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~ 156 (180)
.|...+..++..++.|++.+....... ..+ +++..+|..-...+......|.
T Consensus 43 eL~~~l~~ie~~L~DL~~aV~ive~np---~kF-~l~~~Ei~~Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 43 ELRNALQSIEWDLEDLEEAVRIVEKNP---SKF-NLSEEEISRRRQFVSAIRNQIK 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCH---HHH-T-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc---ccc-CCCHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555554432100 113 7888888888887777666554
No 86
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=31.44 E-value=1.5e+02 Score=20.54 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCccc
Q 037442 94 QLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKY 128 (180)
Q Consensus 94 ~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~ 128 (180)
.+..++.+|..++..++.+++-|...........|
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~~~ 109 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKW 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Confidence 34455566666666666666666666655555554
No 87
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=31.40 E-value=33 Score=24.61 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=20.7
Q ss_pred cceeEEeecCCCCCcccCCCChhHHHHHh
Q 037442 41 AHIAIVVFSPGGKPFSFGHPSVDVVVQRL 69 (180)
Q Consensus 41 v~vavivfsp~gk~~~~~~psv~~Vl~ry 69 (180)
+-+|||+.+|. ++.|..|+-+.++.+|
T Consensus 14 ~G~~ii~~G~~--l~~y~tPTeEeL~~r~ 40 (128)
T PF07960_consen 14 AGAVIIGGGPA--LVKYTTPTEEELFKRY 40 (128)
T ss_pred hcceeEeechH--HheecCCCHHHHHHhc
Confidence 34566666664 6788999999999998
No 88
>PF06020 Roughex: Drosophila roughex protein; InterPro: IPR009259 This family consists of several roughex (RUX) proteins specific to Drosophila species. Roughex can influence the intracellular distribution of cyclin A and is therefore defined as a distinct and specialised cell cycle inhibitor for cyclin A-dependent kinase activity []. Rux is though to regulate the metaphase to anaphase transition during development [].
Probab=30.84 E-value=23 Score=28.95 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=13.4
Q ss_pred hhhcccceeEEeecCC
Q 037442 36 ATLCAAHIAIVVFSPG 51 (180)
Q Consensus 36 s~LC~v~vavivfsp~ 51 (180)
.-+||++||++||--.
T Consensus 183 ~~~~~~EICLavYek~ 198 (334)
T PF06020_consen 183 GQVSGFEICLAVYEKG 198 (334)
T ss_pred CccccceEEeeehhhh
Confidence 3479999999999875
No 89
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=30.81 E-value=1.1e+02 Score=22.52 Aligned_cols=79 Identities=10% Similarity=0.074 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 037442 90 AKVEQLNEQLIDLVNQLEIEKKRGEMLDK-ALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASSSL 168 (180)
Q Consensus 90 ~~~~~l~~~~~~l~~el~~~k~~~~~l~~-~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~~~~~~ 168 (180)
..++.++.++.++|+|..+..+..+.+-+ .+..... .-|+.+---=.+.++.-.++-.++.|..|...|..-++-
T Consensus 77 ~EI~~lq~ElnKiqnEn~k~ekp~Kd~LK~ki~~I~~----~~~Li~~vnYrf~~fvF~~d~~KRAIsDRfK~l~p~s~~ 152 (158)
T PF03112_consen 77 MEIDSLQTELNKIQNENKKREKPIKDLLKIKIDEIMN----KYPLINHVNYRFKEFVFNYDPKKRAISDRFKGLLPISGK 152 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHhcCchhhHHHHHHcccccCCCe
Confidence 35666777777777777665444433322 1111111 122222122246677788888899999999888765555
Q ss_pred cccc
Q 037442 169 LLLK 172 (180)
Q Consensus 169 ~~~~ 172 (180)
++++
T Consensus 153 v~~~ 156 (158)
T PF03112_consen 153 VFFP 156 (158)
T ss_pred eecc
Confidence 5554
No 90
>PF04417 DUF501: Protein of unknown function (DUF501); InterPro: IPR007511 This is a family of uncharacterised bacterial proteins.
Probab=30.42 E-value=2.1e+02 Score=20.67 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=24.9
Q ss_pred cccceeEEeec--CCCCCcc--c--CCCChhHHHHHhhccC
Q 037442 39 CAAHIAIVVFS--PGGKPFS--F--GHPSVDVVVQRLLNWE 73 (180)
Q Consensus 39 C~v~vavivfs--p~gk~~~--~--~~psv~~Vl~ry~~~~ 73 (180)
||.+..+.++. ++|+||+ | ..|.....++|+....
T Consensus 7 ~G~P~Vi~~~P~l~~g~PFPTlfwLtcP~L~~~isrLE~~G 47 (139)
T PF04417_consen 7 CGFPQVIRTAPRLVDGKPFPTLFWLTCPYLVKAISRLEAEG 47 (139)
T ss_pred CCCCeEEEeccCCCCCccCCccHhhcCHHHHHHHHHHHhcC
Confidence 67788777775 6788775 2 4577888888886554
No 91
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=30.17 E-value=2.2e+02 Score=20.88 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 134 NDLGLDELLHMKASLEKLRENLKSHID 160 (180)
Q Consensus 134 ~~Ls~eeL~~l~~~Le~~~~~v~~r~~ 160 (180)
...+.++...+........+..+.|..
T Consensus 140 ~~vs~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 140 KPVSPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348899999999999988888877765
No 92
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=30.12 E-value=5e+02 Score=24.86 Aligned_cols=100 Identities=20% Similarity=0.248 Sum_probs=50.1
Q ss_pred hhHHHHHHHhhhcccceeEEeecCCCC-CcccCCCChhHHHHHhhccCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHH
Q 037442 27 GLFKKANELATLCAAHIAIVVFSPGGK-PFSFGHPSVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQ 105 (180)
Q Consensus 27 gL~KKa~ELs~LC~v~vavivfsp~gk-~~~~~~psv~~Vl~ry~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~l~~e 105 (180)
.-|.||++|.+-- .|. +-+-+|..+..++.-|-... +.-++...|..++..|..+
T Consensus 473 sQF~~AyqLV~~i-----------aGE~~RS~A~~~A~~llR~~p~q~-------------~~aq~~~~lr~~l~eLEqr 528 (1480)
T COG3096 473 SQFEQAYQLVVAI-----------AGELARSEAWDVARELLREGPDQR-------------HLAEQVQPLRMRLSELEQR 528 (1480)
T ss_pred HHHHHHHHHHHHH-----------hCccchhhHHHHHHHHHHhChhhH-------------HHHHhhhHHHHHHHHHHHH
Confidence 4577788775322 132 33344455666666663332 1223444455555555554
Q ss_pred HHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 037442 106 LEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHI 159 (180)
Q Consensus 106 l~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~ 159 (180)
+...+.-...+.+..+.. -..|..++|..+...++.+++.+....
T Consensus 529 ~~qQqsa~~Ll~~f~kr~---------~~~l~ae~lE~~~~e~eal~E~ls~~~ 573 (1480)
T COG3096 529 LRQQQSAERLLADFCKRQ---------GKNLDAEELEALHQELEALIESLSDSV 573 (1480)
T ss_pred HHHHHHHHHHHHHHHHHh---------cccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333333333332222 224558888888777777666554443
No 93
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=30.02 E-value=1.4e+02 Score=20.39 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 136 LGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 136 Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
|+.+++..|...|...+..+..++....
T Consensus 1 M~~~~l~~~k~~L~~~~~~L~~~i~~~~ 28 (110)
T TIGR02420 1 MSEAQLEHFRKILLRWKQELLEEADKTL 28 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888899999888888777776654
No 94
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=29.68 E-value=1.7e+02 Score=20.01 Aligned_cols=27 Identities=11% Similarity=-0.043 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 037442 90 AKVEQLNEQLIDLVNQLEIEKKRGEML 116 (180)
Q Consensus 90 ~~~~~l~~~~~~l~~el~~~k~~~~~l 116 (180)
..+..++.++.+++.+++.++.+...|
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555444444
No 95
>PRK04654 sec-independent translocase; Provisional
Probab=29.54 E-value=25 Score=27.46 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=8.3
Q ss_pred ceeEEeecCCC
Q 037442 42 HIAIVVFSPGG 52 (180)
Q Consensus 42 ~vavivfsp~g 52 (180)
=|++|||+|..
T Consensus 14 VVALlV~GPer 24 (214)
T PRK04654 14 VVALVVLGPER 24 (214)
T ss_pred HHHHHhcCchH
Confidence 46889999953
No 96
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=29.21 E-value=40 Score=25.97 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=20.3
Q ss_pred cccceeEEeecCCCCCcccCCCChhHHHHHhhcc
Q 037442 39 CAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNW 72 (180)
Q Consensus 39 C~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~~ 72 (180)
-||.+||+|||.++. -|.+.+++=|...
T Consensus 91 rgaqa~vLVFSTTDr------~SFea~~~w~~kv 118 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDR------YSFEATLEWYNKV 118 (246)
T ss_pred ccccceEEEEecccH------HHHHHHHHHHHHH
Confidence 489999999999764 2456666666554
No 97
>PF08796 DUF1797: Protein of unknown function (DUF1797); InterPro: IPR014904 The function of this protein is unknown. It forms a central anti-parallel beta sheet with flanking alpha helical regions. ; PDB: 2FFG_B.
Probab=29.13 E-value=33 Score=21.72 Aligned_cols=19 Identities=11% Similarity=0.324 Sum_probs=15.3
Q ss_pred cccceeEEeecCCCCCccc
Q 037442 39 CAAHIAIVVFSPGGKPFSF 57 (180)
Q Consensus 39 C~v~vavivfsp~gk~~~~ 57 (180)
-|+++|.|.|.|....|..
T Consensus 24 ~G~~~c~V~y~~~t~~F~l 42 (67)
T PF08796_consen 24 EGVEVCTVTYDQETETFEL 42 (67)
T ss_dssp TTEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEEEEECCCCeEEE
Confidence 5899999999998665543
No 98
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=28.88 E-value=4.3e+02 Score=24.08 Aligned_cols=32 Identities=13% Similarity=0.317 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHhhchhc
Q 037442 138 LDELLHMKASLEKLREN---LKSHIDDMEASSSLL 169 (180)
Q Consensus 138 ~eeL~~l~~~Le~~~~~---v~~r~~~l~~~~~~~ 169 (180)
.++..+++..+..+... ...++.++......+
T Consensus 261 ~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~ 295 (650)
T TIGR03185 261 FEEREQLERQLKEIEAARKANRAQLRELAADPLPL 295 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 34344455444444443 444444444333333
No 99
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=28.85 E-value=1.3e+02 Score=17.91 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 037442 140 ELLHMKASLEKLRENLKSHIDDMEA 164 (180)
Q Consensus 140 eL~~l~~~Le~~~~~v~~r~~~l~~ 164 (180)
........+...+..|..++..|..
T Consensus 33 ~~~~~~~~l~~~~~~i~~~i~~L~~ 57 (65)
T PF09278_consen 33 PCADRRALLEEKLEEIEEQIAELQA 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344457788888888888888764
No 100
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=28.80 E-value=53 Score=26.21 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=27.8
Q ss_pred hhhhccchhHHHHHHHhhhcccc---eeEEeecCCCCCcccCC
Q 037442 20 TFSKRRNGLFKKANELATLCAAH---IAIVVFSPGGKPFSFGH 59 (180)
Q Consensus 20 tf~KRr~gL~KKa~ELs~LC~v~---vavivfsp~gk~~~~~~ 59 (180)
-|++-+.|++||. .+..||+.. ||=|.||+.+...-|++
T Consensus 119 ~~~~~~~~~~~~~-~~~~L~~~~~~l~~~v~fS~~~r~IGFSk 160 (269)
T PRK09822 119 FYRREKGGFLKKI-KFNILKRVHKALLISVPLSKRGRLAGFCK 160 (269)
T ss_pred hhhhccCchhhhh-HHHHHhhhhhhhEEEeeccccCCceeeee
Confidence 3566688898887 477888764 55567999887666643
No 101
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=28.79 E-value=1.6e+02 Score=18.76 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037442 92 VEQLNEQLIDLVNQLEIEKKR 112 (180)
Q Consensus 92 ~~~l~~~~~~l~~el~~~k~~ 112 (180)
|..+-+.+.-|+.+++.++.+
T Consensus 13 i~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444433
No 102
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=28.75 E-value=3.1e+02 Score=22.08 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcC
Q 037442 88 QEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKG 124 (180)
Q Consensus 88 ~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~ 124 (180)
...++..|..++..+.+.++.++.+...-+..+....
T Consensus 178 a~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n 214 (259)
T PF08657_consen 178 AREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMN 214 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888888888888777776665555443
No 103
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=28.73 E-value=3.1e+02 Score=22.01 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 037442 89 EAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALK 121 (180)
Q Consensus 89 ~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~ 121 (180)
+.++.++..++..|.++++.+..+++.|+..-.
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~ 121 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINE 121 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888999999998888888888876543
No 104
>PHA03162 hypothetical protein; Provisional
Probab=28.42 E-value=2.3e+02 Score=20.44 Aligned_cols=55 Identities=13% Similarity=-0.018 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 037442 99 LIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLREN 154 (180)
Q Consensus 99 ~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~ 154 (180)
+++|..++.+++.+|..|.+.++...+.. -=+.-.-|+..+=+.+..+.-..+..
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~-~~p~d~~LTp~qKea~I~s~v~~Lts 69 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDD-PLPGDPILTPAAKEAMIGAATAALTR 69 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCCccCCHHHHHHHHHHHHHHHHH
Confidence 34455555555556666666665543321 00113458998888887666554443
No 105
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=28.34 E-value=5.5e+02 Score=24.77 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 037442 91 KVEQLNEQLIDLVNQLEIEKKRGEMLDKALK 121 (180)
Q Consensus 91 ~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~ 121 (180)
.++.+-.++.+++.+++..+++...+...+.
T Consensus 182 ~iNq~l~klkq~~~ei~e~eke~a~yh~lLe 212 (984)
T COG4717 182 QINQLLEKLKQERNEIDEAEKEYATYHKLLE 212 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666777766666666655543
No 106
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=28.29 E-value=3.2e+02 Score=23.81 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccc
Q 037442 95 LNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASSSLLLLK 172 (180)
Q Consensus 95 l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~~~~~~~~~~ 172 (180)
|+-.+.+++.++..++....++++.+.-+.+. ..+...|.+.++.++..+..+.++++-+--.
T Consensus 411 l~~~lv~~edeirrlkrdm~klkq~l~RN~gd---------------~v~s~~lqe~L~ev~~~Lasl~aqea~ls~e 473 (486)
T KOG2185|consen 411 LGAALVEYEDEIRRLKRDMLKLKQMLNRNKGD---------------LVVSEALQERLKEVRKALASLLAQEAALSNE 473 (486)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44445555566666655555566555444321 1356677778888888888887776654433
No 107
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=28.12 E-value=1.3e+02 Score=18.54 Aligned_cols=20 Identities=35% Similarity=0.321 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 037442 99 LIDLVNQLEIEKKRGEMLDK 118 (180)
Q Consensus 99 ~~~l~~el~~~k~~~~~l~~ 118 (180)
+.+|.++++..++....+..
T Consensus 6 ~~rL~Kel~kl~~~i~~~~~ 25 (66)
T PF10458_consen 6 IERLEKELEKLEKEIERLEK 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444343333
No 108
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=28.09 E-value=1.8e+02 Score=21.56 Aligned_cols=15 Identities=7% Similarity=0.242 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHH
Q 037442 131 KSINDLGLDELLHMK 145 (180)
Q Consensus 131 ~~l~~Ls~eeL~~l~ 145 (180)
.|++.|+.+|+....
T Consensus 126 ~P~e~mT~dd~~~a~ 140 (161)
T PF05873_consen 126 RPFEQMTVDDYAAAF 140 (161)
T ss_dssp ---------------
T ss_pred CChHhCCHHHHHHhC
Confidence 468899988875543
No 109
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=27.61 E-value=81 Score=21.47 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=21.5
Q ss_pred HHHHHHhhhcccceeEEeecCCCCCcccCC
Q 037442 30 KKANELATLCAAHIAIVVFSPGGKPFSFGH 59 (180)
Q Consensus 30 KKa~ELs~LC~v~vavivfsp~gk~~~~~~ 59 (180)
-|..||--+-||- |.=.|||+|++..|-.
T Consensus 3 ekLdeLlqi~Gv~-AAGefs~DGkLv~Ykg 31 (109)
T COG4831 3 EKLDELLQIKGVM-AAGEFSPDGKLVEYKG 31 (109)
T ss_pred hhHHHHhCcccee-EeceeCCCCceEEeeC
Confidence 3567777777774 4468999999988844
No 110
>PF00843 Arena_nucleocap: Arenavirus nucleocapsid protein; InterPro: IPR000229 Arenaviruses are single stranded RNA viruses. The arenavirus S RNAs that have been characterised include conserved terminal sequences, an ambisense arrangement of the coding regions for the precursor glycoprotein (GPC) and nucleocapsid (N) proteins and an intergenic region capable of forming a base-paired "hairpin" structure. The mature glycoproteins that result are G1 and G2 and the N protein []. This family represents the nucleocapsid protein that encapsulates the viral ssRNA [].; GO: 0019013 viral nucleocapsid; PDB: 3MX5_A 3MX2_C 3MWT_C 3Q7C_A 3MWP_B 3Q7B_A 3T5Q_E 3T5N_A 3R3L_B.
Probab=27.43 E-value=1.7e+02 Score=25.64 Aligned_cols=25 Identities=36% Similarity=0.701 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 037442 133 INDLGLDELLHMKASLEKLRENLKS 157 (180)
Q Consensus 133 l~~Ls~eeL~~l~~~Le~~~~~v~~ 157 (180)
+.+|+-+||..|..-||.++++|..
T Consensus 88 vG~LskdeLm~LasDLeKLk~Kv~r 112 (533)
T PF00843_consen 88 VGDLSKDELMELASDLEKLKKKVQR 112 (533)
T ss_dssp BTTB-HHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcCHHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999999998864
No 111
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=27.37 E-value=1.5e+02 Score=20.58 Aligned_cols=46 Identities=9% Similarity=0.182 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHcCC--cccccCCCCC
Q 037442 90 AKVEQLNEQLIDLVNQLEIEKKRGEML--DKALKAKGL--SKYCKKSIND 135 (180)
Q Consensus 90 ~~~~~l~~~~~~l~~el~~~k~~~~~l--~~~~~~~~~--~~~w~~~l~~ 135 (180)
.-+.++..++.++..+...+.++...+ .+.++.... .+|+.-+++.
T Consensus 42 ~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~Les~p~~W~~~gf~~ 91 (109)
T PF11690_consen 42 DFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRALESHPFDWERRGFDK 91 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHhchHH
Confidence 345566667777777777776666666 666665543 5676554443
No 112
>PF15603 Imm45: Immunity protein 45
Probab=27.31 E-value=96 Score=20.39 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=20.2
Q ss_pred cccCCCCC--CCHHHHHHHHHHHHHHHH
Q 037442 128 YCKKSIND--LGLDELLHMKASLEKLRE 153 (180)
Q Consensus 128 ~w~~~l~~--Ls~eeL~~l~~~Le~~~~ 153 (180)
-|++|.++ ++..|++.+.+++.....
T Consensus 46 ~We~P~e~~~it~~e~q~II~aI~~~~~ 73 (82)
T PF15603_consen 46 NWEPPHENEPITIAERQKIIEAIEKYFS 73 (82)
T ss_pred cccCCCCCcccCHHHHHHHHHHHHHHHh
Confidence 39999887 788998888887776443
No 113
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.19 E-value=1.8e+02 Score=18.70 Aligned_cols=39 Identities=26% Similarity=0.278 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcC
Q 037442 86 AEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKG 124 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~ 124 (180)
+|..+.|+.||..+...+..+++...+...|-..++...
T Consensus 18 AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 18 AFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566778888888888888888777777777766666544
No 114
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=27.19 E-value=71 Score=28.25 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 037442 91 KVEQLNEQLIDLVNQLEIEKKRGEMLDK 118 (180)
Q Consensus 91 ~~~~l~~~~~~l~~el~~~k~~~~~l~~ 118 (180)
+|++|.+|+++|++++..+.++..+.++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 6777777777777777665555544443
No 115
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=27.02 E-value=1.8e+02 Score=18.68 Aligned_cols=65 Identities=23% Similarity=0.259 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037442 94 QLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEA 164 (180)
Q Consensus 94 ~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~~ 164 (180)
+...++.+|++++=.+|-+.--|.+.+....... +.+ -..+-.+|...++.+...+..+...|..
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~-----~~~-~~keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGPES-----IEE-LLKENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhccccc-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777777776665332111 222 2444455777777777777777766653
No 116
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.40 E-value=4.6e+02 Score=23.22 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037442 88 QEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEAS 165 (180)
Q Consensus 88 ~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~~~ 165 (180)
...++..++.++..+..+++.++++++.|++....... ++...|+.....+....++|...
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~-----------------~i~~av~~~~~~~~~~~~ql~~~ 124 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ-----------------QIQQAVQSETQELTKEIEQLKSE 124 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-----------------HHHHHHHhhhHHHHHHHHHHHHH
No 117
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=26.27 E-value=58 Score=23.64 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=18.2
Q ss_pred HhhhcccceeEEeecCCCCCccc
Q 037442 35 LATLCAAHIAIVVFSPGGKPFSF 57 (180)
Q Consensus 35 Ls~LC~v~vavivfsp~gk~~~~ 57 (180)
+.++|||+|-++|-+-+.+...|
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f 81 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRF 81 (148)
T ss_pred HHHhhccceeeeeecccCccccC
Confidence 57899999999999987754444
No 118
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=25.76 E-value=1.7e+02 Score=17.99 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 037442 91 KVEQLNEQLIDLVNQLEIEKKRGEMLDK 118 (180)
Q Consensus 91 ~~~~l~~~~~~l~~el~~~k~~~~~l~~ 118 (180)
.++-|..++.+|..++..++.++..|..
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777777776666666665543
No 119
>COG3411 Ferredoxin [Energy production and conversion]
Probab=25.63 E-value=62 Score=20.26 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=22.8
Q ss_pred eEEeecCCCCCcccCCC-ChhHHHHHhhccC
Q 037442 44 AIVVFSPGGKPFSFGHP-SVDVVVQRLLNWE 73 (180)
Q Consensus 44 avivfsp~gk~~~~~~p-sv~~Vl~ry~~~~ 73 (180)
+++++.|+|-.|...+| .++.|++..+...
T Consensus 18 Pvl~vYpegvWY~~V~p~~a~rIv~~hl~~G 48 (64)
T COG3411 18 PVLVVYPEGVWYTRVDPEDARRIVQSHLLGG 48 (64)
T ss_pred CEEEEecCCeeEeccCHHHHHHHHHHHHhCC
Confidence 46677788988888887 4889988876643
No 120
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=25.35 E-value=1.4e+02 Score=16.87 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 037442 137 GLDELLHMKASLEKLRENL 155 (180)
Q Consensus 137 s~eeL~~l~~~Le~~~~~v 155 (180)
.+++|.+|...|+.-.+..
T Consensus 5 ~ieelkqll~rle~eiret 23 (46)
T PF08181_consen 5 KIEELKQLLWRLENEIRET 23 (46)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567777777776544433
No 121
>PF13252 DUF4043: Protein of unknown function (DUF4043)
Probab=25.21 E-value=36 Score=28.57 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=18.8
Q ss_pred HHHhhhcccceeEEeecCCCC--Cccc
Q 037442 33 NELATLCAAHIAIVVFSPGGK--PFSF 57 (180)
Q Consensus 33 ~ELs~LC~v~vavivfsp~gk--~~~~ 57 (180)
-.-+.|||+.++++.|+..+. +|.|
T Consensus 272 v~ralLlGaQA~~~A~G~~~~~~~~~w 298 (341)
T PF13252_consen 272 VARALLLGAQALVIAFGKSGSGMRFFW 298 (341)
T ss_pred eeeeeeechhheeeeeeccCCCccccc
Confidence 345789999999999999543 4444
No 122
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.20 E-value=5e+02 Score=23.87 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 037442 90 AKVEQLNEQLIDLVNQLEIEKKRGEMLDKAL 120 (180)
Q Consensus 90 ~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~ 120 (180)
..+..+...+++++.++..++..++.++..+
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~ei 452 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREI 452 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555544444444444443
No 123
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=25.17 E-value=43 Score=24.74 Aligned_cols=19 Identities=26% Similarity=0.707 Sum_probs=14.9
Q ss_pred hhcccceeEEeecCCCCCc
Q 037442 37 TLCAAHIAIVVFSPGGKPF 55 (180)
Q Consensus 37 ~LC~v~vavivfsp~gk~~ 55 (180)
.-|+++|-+++|||..+.|
T Consensus 109 p~c~iKvL~LlYs~kk~~f 127 (152)
T PF11232_consen 109 PPCEIKVLMLLYSPKKKAF 127 (152)
T ss_dssp SSSS-SEEEEEEETTTTEE
T ss_pred CCCceEEEEEEEcCCCceE
Confidence 5689999999999987755
No 124
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=24.71 E-value=25 Score=18.10 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=16.5
Q ss_pred hhhcccceeEEeecCCCCCcccCCCC
Q 037442 36 ATLCAAHIAIVVFSPGGKPFSFGHPS 61 (180)
Q Consensus 36 s~LC~v~vavivfsp~gk~~~~~~ps 61 (180)
++-||-.-.+++.+. |.+|.||+.+
T Consensus 3 ~ia~G~~ht~al~~~-g~v~~wG~n~ 27 (30)
T PF13540_consen 3 QIACGGYHTCALTSD-GEVYCWGDNN 27 (30)
T ss_dssp EEEEESSEEEEEE-T-TEEEEEE--T
T ss_pred EEEecCCEEEEEEcC-CCEEEEcCCc
Confidence 356787777777765 8899998643
No 125
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=24.67 E-value=6.8e+02 Score=24.65 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=9.7
Q ss_pred eeEEeecCCCCCcccCCC
Q 037442 43 IAIVVFSPGGKPFSFGHP 60 (180)
Q Consensus 43 vavivfsp~gk~~~~~~p 60 (180)
=|.=+|.|+|.-.-|+.|
T Consensus 620 n~~~aytldg~~~~~~g~ 637 (1074)
T KOG0250|consen 620 NVTKAYTLDGRQIFAGGP 637 (1074)
T ss_pred cceeeeccCccccccCCC
Confidence 344467887753334444
No 126
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=24.64 E-value=53 Score=20.39 Aligned_cols=29 Identities=28% Similarity=0.568 Sum_probs=17.0
Q ss_pred cccceeEEeecCCCCCcccCCCC-hhHHHHH
Q 037442 39 CAAHIAIVVFSPGGKPFSFGHPS-VDVVVQR 68 (180)
Q Consensus 39 C~v~vavivfsp~gk~~~~~~ps-v~~Vl~r 68 (180)
|+-.-.|+|+ |.+..|...+|. +..|++.
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~~~~~il~~ 76 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPEDVEEIVEE 76 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHHHHHHHHHh
Confidence 4444444444 666667666663 6677664
No 127
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=24.24 E-value=1e+02 Score=20.16 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=21.6
Q ss_pred ceeEEeecCCCC--CcccCCC-ChhHHHHHhhccC
Q 037442 42 HIAIVVFSPGGK--PFSFGHP-SVDVVVQRLLNWE 73 (180)
Q Consensus 42 ~vavivfsp~gk--~~~~~~p-sv~~Vl~ry~~~~ 73 (180)
.+-|+|++.+++ +|.+..+ ..+.++.+|....
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~Tpd 42 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCTPD 42 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccCcC
Confidence 456788888774 5655443 4778888887554
No 128
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.61 E-value=4.8e+02 Score=22.54 Aligned_cols=31 Identities=39% Similarity=0.449 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 037442 86 AEQEAKVEQLNEQLIDLVNQLEIEKKRGEML 116 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l 116 (180)
......+..|..++..++++++.++.....+
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l 360 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKL 360 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566667777777776666665554443
No 129
>KOG4316 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.44 E-value=40 Score=24.73 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=24.7
Q ss_pred HHHhhhcccceeEEeecCCCC------CcccCC-----CChhHHHHHhhccCC
Q 037442 33 NELATLCAAHIAIVVFSPGGK------PFSFGH-----PSVDVVVQRLLNWEM 74 (180)
Q Consensus 33 ~ELs~LC~v~vavivfsp~gk------~~~~~~-----psv~~Vl~ry~~~~~ 74 (180)
+++++||+.+.-+.--...+- ..-|+. -.|++||+||+....
T Consensus 43 ~a~~~lcq~p~vla~r~a~~~Ps~~r~~t~Fs~~kGkrktvkaVldRFkRL~~ 95 (172)
T KOG4316|consen 43 SARNLLCQHPSVLANRMAPVLPSVVRSLTYFSARKGKRKTVKAVLDRFKRLHC 95 (172)
T ss_pred hHHHhHhcCcHHHHhccCCCCcchhhhhhhhhhhhcccccHHHHHHHHHhccc
Confidence 678999987654432111121 122321 128899999998764
No 130
>TIGR03726 strep_RK_lipo putative cross-wall-targeting lipoprotein signal. The YSIRK signal domain targets proteins to the cross-wall, or septum, of dividing Gram-positive bacterial. Lipoprotein signal motifs direct a characteristic N-terminal cleavage and lipid modification for membrane anchoring. This Streptococcal-only signal peptide variant appears to be a hybrid between the two, likely directing protein targeting of nascent surface lipoproteins to the cross-wall. Nearly all members of this family have the characteristic LPXTG cell wall anchor signal at the C-terminus.
Probab=23.38 E-value=35 Score=18.50 Aligned_cols=16 Identities=38% Similarity=0.808 Sum_probs=11.9
Q ss_pred HHHHHHHhhhccccee
Q 037442 29 FKKANELATLCAAHIA 44 (180)
Q Consensus 29 ~KKa~ELs~LC~v~va 44 (180)
|+|-.-.-+||||-.+
T Consensus 3 FRKsK~~~tLCGa~Lg 18 (34)
T TIGR03726 3 FRKSKKYRTLCGAALG 18 (34)
T ss_pred chhhHHHHHHHHHHHH
Confidence 5677777899998554
No 131
>COG5134 Uncharacterized conserved protein [Function unknown]
Probab=23.31 E-value=3.8e+02 Score=21.17 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=12.4
Q ss_pred hhhcccceeEEeecCCCCCccc
Q 037442 36 ATLCAAHIAIVVFSPGGKPFSF 57 (180)
Q Consensus 36 s~LC~v~vavivfsp~gk~~~~ 57 (180)
|++|+-.+|+ -..|.+..|.-
T Consensus 82 C~~C~n~i~~-RTDPkN~~YV~ 102 (272)
T COG5134 82 CHLCSNPIDV-RTDPKNTEYVV 102 (272)
T ss_pred ccCCCCceee-ecCCCCceEEE
Confidence 6778877774 34554444433
No 132
>PHA02562 46 endonuclease subunit; Provisional
Probab=23.07 E-value=4.9e+02 Score=22.88 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=14.8
Q ss_pred EeecCCCCCccc--CCC-ChhHHHHHhhccC
Q 037442 46 VVFSPGGKPFSF--GHP-SVDVVVQRLLNWE 73 (180)
Q Consensus 46 ivfsp~gk~~~~--~~p-sv~~Vl~ry~~~~ 73 (180)
+|+-|.|...+| ..| .-..+++++.+..
T Consensus 133 ~v~l~q~~f~~f~~~~~~er~~il~~l~~~~ 163 (562)
T PHA02562 133 IVVLGTAGYVPFMQLSAPARRKLVEDLLDIS 163 (562)
T ss_pred HheeccCchhhHhcCChHhHHHHHHHHhCCH
Confidence 345565654444 223 2456777776644
No 133
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=23.06 E-value=5.2e+02 Score=22.74 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037442 134 NDLGLDELLHMKASLEKLRENLKSHIDDMEA 164 (180)
Q Consensus 134 ~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~~ 164 (180)
-.|+.+|+.++.+.+.+ +.-+++.|..
T Consensus 78 ~~~T~d~~~~~~qqiAn----~~lKv~~l~d 104 (514)
T PF11336_consen 78 AGLTNDDATEMRQQIAN----AQLKVESLED 104 (514)
T ss_pred cccChHHHHHHHHHHHh----hhhhHHHHhh
Confidence 46789999988888776 3344444443
No 134
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=23.02 E-value=2.5e+02 Score=19.02 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 037442 86 AEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKAL 120 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~ 120 (180)
.+...++..++.++.++..++...+.+...+...+
T Consensus 80 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l 114 (120)
T PF02996_consen 80 EFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTL 114 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777766666655554443
No 135
>PF01996 F420_ligase: F420-0:Gamma-glutamyl ligase; InterPro: IPR002847 This entry contains F420-0:gamma-glutamyl ligase and related proteins. F420-0:gamma-glutamyl ligase catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives [, , , ].; PDB: 2G9I_A 2PHN_A.
Probab=22.75 E-value=22 Score=28.04 Aligned_cols=29 Identities=17% Similarity=0.554 Sum_probs=21.0
Q ss_pred HHHhhhcccceeEEeecCCCCCcccCCCC
Q 037442 33 NELATLCAAHIAIVVFSPGGKPFSFGHPS 61 (180)
Q Consensus 33 ~ELs~LC~v~vavivfsp~gk~~~~~~ps 61 (180)
.+|--.||++|+|||..+.|.+|-.|.+.
T Consensus 141 ~~l~~~~g~~v~ViI~Dt~gr~~r~G~~~ 169 (228)
T PF01996_consen 141 EELKERTGKDVGVIITDTNGRPWRLGQTG 169 (228)
T ss_dssp HHHHHHHS---EEEEEEEEEETTEECEEE
T ss_pred HHHHHHHCCceEEEEECCCCcEEecCCcc
Confidence 45667799999999999999888877654
No 136
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=22.67 E-value=5e+02 Score=22.37 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 133 INDLGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 133 l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
-..+++++|..|.+.++..+..|+.-..+.+
T Consensus 171 DsSvspeq~kKlqdrveK~k~evqktkekYe 201 (472)
T KOG2856|consen 171 DSSVSPEQLKKLQDRVEKCKQEVQKTKEKYE 201 (472)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999998887766544
No 137
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=22.65 E-value=57 Score=29.83 Aligned_cols=43 Identities=19% Similarity=0.386 Sum_probs=37.0
Q ss_pred chhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHh
Q 037442 26 NGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRL 69 (180)
Q Consensus 26 ~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry 69 (180)
.++|++|.||.+=--+++.++=||. ..|+..+.|.|-+.|.-|
T Consensus 446 ~e~i~t~~elTvgDtsp~~L~EySE-e~P~~Lsn~GMas~l~nY 488 (968)
T COG5179 446 QEIIKTAGELTVGDTSPFSLFEYSE-EEPFFLSNPGMASLLNNY 488 (968)
T ss_pred hhhhccccceeccCCCceeeeeecc-cCceeecCchHHHHHHHH
Confidence 7899999999999899999999999 668888889877666555
No 138
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.44 E-value=3.7e+02 Score=20.80 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 88 QEAKVEQLNEQLIDLVNQLEIEKKR 112 (180)
Q Consensus 88 ~~~~~~~l~~~~~~l~~el~~~k~~ 112 (180)
...++..++.++.+++.++......
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4566677777777777666655433
No 139
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=22.32 E-value=1.1e+02 Score=19.51 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=28.5
Q ss_pred chhHHHHHHHhhhcccceeEEeecCCCCCccc
Q 037442 26 NGLFKKANELATLCAAHIAIVVFSPGGKPFSF 57 (180)
Q Consensus 26 ~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~ 57 (180)
..++.+-.++=++.|++|-++-.+|.|.|..+
T Consensus 20 ~~~~~rL~~mGl~pG~~V~v~~~aP~gdPi~i 51 (74)
T PRK09555 20 PAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHI 51 (74)
T ss_pred hHHHHHHHHcCCCCCCEEEEEEECCCCCCEEE
Confidence 45788899999999999999999999988765
No 140
>PRK13294 F420-0--gamma-glutamyl ligase; Provisional
Probab=22.11 E-value=90 Score=27.26 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=20.3
Q ss_pred HHHhhhcccceeEEeecCCCCCcccC
Q 037442 33 NELATLCAAHIAIVVFSPGGKPFSFG 58 (180)
Q Consensus 33 ~ELs~LC~v~vavivfsp~gk~~~~~ 58 (180)
.+|.-.||++|+|||....|.||--|
T Consensus 134 ~~l~~~~g~~v~vii~Dt~gr~~r~g 159 (448)
T PRK13294 134 AGLRERLGVDVAVVVTDTMGRAWRNG 159 (448)
T ss_pred HHHHHHHCCCEEEEEecCCCCccccC
Confidence 35677899999999999987765443
No 141
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=21.99 E-value=73 Score=20.94 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=21.4
Q ss_pred hhHHHHHHHhhhc----ccceeEEeecCCCCC
Q 037442 27 GLFKKANELATLC----AAHIAIVVFSPGGKP 54 (180)
Q Consensus 27 gL~KKa~ELs~LC----~v~vavivfsp~gk~ 54 (180)
-+++.|-+++... +..|+.+|++|+|+.
T Consensus 6 ~~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~ 37 (102)
T PF00383_consen 6 EFMRIAIELAKRSRPCGNFPVGAVIVDPDGKI 37 (102)
T ss_dssp HHHHHHHHHHHTHBTTTSSSEEEEEEETTTEE
T ss_pred HHHHHHHHHHHhccccCCCCEEEEEEeccCcc
Confidence 4577777776666 789999999987654
No 142
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=21.95 E-value=95 Score=25.65 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=23.7
Q ss_pred hhHHHH-HHH--hhhcccceeEEeecCCC--CCcc-cCCC
Q 037442 27 GLFKKA-NEL--ATLCAAHIAIVVFSPGG--KPFS-FGHP 60 (180)
Q Consensus 27 gL~KKa-~EL--s~LC~v~vavivfsp~g--k~~~-~~~p 60 (180)
-+|..+ ..+ +++-|..+||++|+++| |.|+ ||.+
T Consensus 64 ~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~ 103 (333)
T cd01371 64 DVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVR 103 (333)
T ss_pred HHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCC
Confidence 355553 444 77889999999999975 6664 4543
No 143
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=21.69 E-value=2.3e+02 Score=18.17 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037442 137 GLDELLHMKASLEKLRENLKSHIDDMEAS 165 (180)
Q Consensus 137 s~eeL~~l~~~Le~~~~~v~~r~~~l~~~ 165 (180)
.-+++..+...+..+...++.++..|...
T Consensus 43 ~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 43 LKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777888888888754
No 144
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=21.48 E-value=3.1e+02 Score=19.50 Aligned_cols=69 Identities=14% Similarity=0.064 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 93 EQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDM 162 (180)
Q Consensus 93 ~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l 162 (180)
+.....+.+....++....+...|......+.. .|-...-.++++.+|..+...|+.+...|......+
T Consensus 19 e~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~v 87 (146)
T PRK07720 19 EKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQ-AKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLLV 87 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555555555555555444433221 111222567888888888877777777665554443
No 145
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=21.42 E-value=93 Score=25.55 Aligned_cols=33 Identities=21% Similarity=0.485 Sum_probs=22.9
Q ss_pred hhHHHHHHH--hhhcccceeEEeecCCC--CCcc-cCC
Q 037442 27 GLFKKANEL--ATLCAAHIAIVVFSPGG--KPFS-FGH 59 (180)
Q Consensus 27 gL~KKa~EL--s~LC~v~vavivfsp~g--k~~~-~~~ 59 (180)
-+|.....+ +++-|..+|++.|+++| |.|+ ||.
T Consensus 61 ~v~~~v~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~ 98 (329)
T cd01366 61 DVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGP 98 (329)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCCCCCCCcEEecCC
Confidence 455544444 56789999999999965 6664 454
No 146
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=21.32 E-value=2.9e+02 Score=19.08 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 134 NDLGLDELLHMKASLEKLRENLKSHIDDM 162 (180)
Q Consensus 134 ~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l 162 (180)
.+++-+++..+...++..++.++.|+...
T Consensus 32 g~~a~~e~~~lR~r~~~~Lk~~r~rl~~~ 60 (104)
T COG4575 32 GSLAGDEAEELRSKAESALKEARDRLGDT 60 (104)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36788999999999999999999888765
No 147
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=21.29 E-value=4.8e+02 Score=21.61 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=36.9
Q ss_pred hcccceeEEeecCCCCCcccCC-------------CChhHHHHHhhccCCCCCCCCCccchhHHHHHHHHHHHHHHHHHH
Q 037442 38 LCAAHIAIVVFSPGGKPFSFGH-------------PSVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVN 104 (180)
Q Consensus 38 LC~v~vavivfsp~gk~~~~~~-------------psv~~Vl~ry~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~l~~ 104 (180)
|-|=++++|+.+. |-.|.|-. -+++.|.+++..++. ......+.+++.-+.....
T Consensus 21 LvGGp~Gl~ml~A-gA~Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~-----------~ql~~~~~k~~~si~~q~~ 88 (301)
T PF06120_consen 21 LVGGPPGLVMLGA-GAWYYFYQNAEQARQEAIEFADSLDELKEKLKEMSS-----------TQLRANIAKAEESIAAQKR 88 (301)
T ss_pred hhcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCH-----------HHHHHHHHHHHHHHHHHHH
Confidence 4455566666554 33444411 236677777777763 2334445555555555555
Q ss_pred HHHHHHHHhHHHHHHH
Q 037442 105 QLEIEKKRGEMLDKAL 120 (180)
Q Consensus 105 el~~~k~~~~~l~~~~ 120 (180)
.++.++.+...+...+
T Consensus 89 ~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 89 AIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555444444
No 148
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=21.24 E-value=2.2e+02 Score=17.60 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=18.0
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhHHHHH
Q 037442 89 EAKVEQLNEQ----LIDLVNQLEIEKKRGEMLDK 118 (180)
Q Consensus 89 ~~~~~~l~~~----~~~l~~el~~~k~~~~~l~~ 118 (180)
..+|..|+.+ +..|..|++.+++++..|.-
T Consensus 9 e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~ 42 (60)
T PF14916_consen 9 EKSILFLQQEHAQTLKGLHAEIERLQKRNKDLTF 42 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccce
Confidence 4556666665 34555666666666666543
No 149
>PHA00024 IX minor coat protein
Probab=21.15 E-value=61 Score=17.47 Aligned_cols=11 Identities=36% Similarity=0.383 Sum_probs=8.5
Q ss_pred hhHHHHHHHhh
Q 037442 27 GLFKKANELAT 37 (180)
Q Consensus 27 gL~KKa~ELs~ 37 (180)
+.|||++|-++
T Consensus 23 l~FKk~~E~~~ 33 (33)
T PHA00024 23 LVFKKLSERIS 33 (33)
T ss_pred HHHHHHHHhcC
Confidence 57899998663
No 150
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=21.14 E-value=1.5e+02 Score=19.19 Aligned_cols=15 Identities=13% Similarity=0.364 Sum_probs=11.8
Q ss_pred HHHHhhhcccceeEE
Q 037442 32 ANELATLCAAHIAIV 46 (180)
Q Consensus 32 a~ELs~LC~v~vavi 46 (180)
..|+|..||++...|
T Consensus 3 ~~e~~~~~~i~~~~l 17 (84)
T PF13591_consen 3 LEEFCEACGIEPEFL 17 (84)
T ss_pred HHHHHHHHCcCHHHH
Confidence 468999999877665
No 151
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=21.12 E-value=96 Score=25.85 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=24.2
Q ss_pred hhHHHHHH-H--hhhcccceeEEeecCCC--CCcc-cCCCC
Q 037442 27 GLFKKANE-L--ATLCAAHIAIVVFSPGG--KPFS-FGHPS 61 (180)
Q Consensus 27 gL~KKa~E-L--s~LC~v~vavivfsp~g--k~~~-~~~ps 61 (180)
.+|+.... + .++-|..+||++|+++| |-|+ ||.+.
T Consensus 71 ~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~ 111 (345)
T cd01368 71 EFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPG 111 (345)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCC
Confidence 45665432 2 56789999999999976 6664 56654
No 152
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=21.08 E-value=1.5e+02 Score=21.03 Aligned_cols=25 Identities=16% Similarity=0.454 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 138 LDELLHMKASLEKLRENLKSHIDDM 162 (180)
Q Consensus 138 ~eeL~~l~~~Le~~~~~v~~r~~~l 162 (180)
++||.-|+..+..+...|+..++.|
T Consensus 101 L~dL~HLE~Vv~~KIaEIe~dlekL 125 (125)
T PF11944_consen 101 LDDLRHLEKVVNSKIAEIERDLEKL 125 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5678888888888888888887654
No 153
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.98 E-value=2.1e+02 Score=20.22 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037442 133 INDLGLDELLHMKASLEKLRENLKSHIDDMEASS 166 (180)
Q Consensus 133 l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~~~~ 166 (180)
-+++|.+||..|......++.--...++.+....
T Consensus 82 ~~nis~~El~~lk~la~~l~~~~~~~l~~~i~~g 115 (120)
T PF06296_consen 82 KANISDKELKALKKLAKELLNLSEEQLETLIANG 115 (120)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHcC
Confidence 6899999999999999999999898888887543
No 154
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.93 E-value=3e+02 Score=19.13 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Q 037442 90 AKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAK 123 (180)
Q Consensus 90 ~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~ 123 (180)
..+..|..++..|.+|+..++-++..|.+.+...
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777777777776653
No 155
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=20.84 E-value=54 Score=18.41 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.2
Q ss_pred hhccchhHHHHHHHhhhcccc
Q 037442 22 SKRRNGLFKKANELATLCAAH 42 (180)
Q Consensus 22 ~KRr~gL~KKa~ELs~LC~v~ 42 (180)
..||.-|++|=-|+-.|+|.+
T Consensus 16 ~~RRk~IL~k~PeIk~L~G~d 36 (39)
T PF08557_consen 16 ASRRKEILKKHPEIKKLMGPD 36 (39)
T ss_pred HHHHHHHHHhChHHHHHhCCC
Confidence 468899999999999999875
No 156
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=20.60 E-value=3.8e+02 Score=22.44 Aligned_cols=82 Identities=23% Similarity=0.354 Sum_probs=53.4
Q ss_pred eEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecC--CCCCcccCCCChhHH---HHHhhccCCCCCCCCCcc
Q 037442 9 KMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSP--GGKPFSFGHPSVDVV---VQRLLNWEMDPKDETNSH 83 (180)
Q Consensus 9 k~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp--~gk~~~~~~psv~~V---l~ry~~~~~~~~~~~~~~ 83 (180)
+.|..+-++.-.-+.+|..++|+.+.|=.+ .+-|...|. +.--|-|.+|+...+ +.+|+...
T Consensus 206 ~~~pq~la~~gkvslsr~eilk~iG~LFll---R~~iNL~s~IlDtPef~W~ePqleplY~~~~~yLdI~---------- 272 (331)
T COG1723 206 KPIPQELARTGKVSLSRKEILKQIGKLFLL---RVSINLHSDILDTPEFFWSEPQLEPLYLAVREYLDIN---------- 272 (331)
T ss_pred chhHHHHhhcCCccccHHHHHHHHhHHhhe---eeeeeeeeccccCchhcccCcchhHHHHHHHHHhchh----------
Confidence 444555566667788999999999987544 455555554 222467888987755 45555444
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 84 VDAEQEAKVEQLNEQLIDLVNQLEIE 109 (180)
Q Consensus 84 ~e~~~~~~~~~l~~~~~~l~~el~~~ 109 (180)
++++-||..++-+...++.+
T Consensus 273 ------~RvnvLN~Rl~vi~d~l~il 292 (331)
T COG1723 273 ------PRVNVLNRRLEVISDLLDIL 292 (331)
T ss_pred ------HHHHHHHHHHHHHHHHHHHH
Confidence 36777887777766665544
No 157
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=20.60 E-value=98 Score=25.70 Aligned_cols=36 Identities=17% Similarity=0.415 Sum_probs=25.0
Q ss_pred chhHHHHH-HH--hhhcccceeEEeecCCC--CCcc-cCCCC
Q 037442 26 NGLFKKAN-EL--ATLCAAHIAIVVFSPGG--KPFS-FGHPS 61 (180)
Q Consensus 26 ~gL~KKa~-EL--s~LC~v~vavivfsp~g--k~~~-~~~ps 61 (180)
..+|..+. .| +++-|..+||+.|+++| |-|+ ||.+.
T Consensus 69 ~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~ 110 (338)
T cd01370 69 EEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDS 110 (338)
T ss_pred HHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCC
Confidence 45666665 22 56789999999999975 6665 46543
No 158
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.55 E-value=5e+02 Score=22.44 Aligned_cols=77 Identities=25% Similarity=0.281 Sum_probs=47.6
Q ss_pred CcccchhhhhccchhHHHHHHHhhhcccceeEEeecC--CCCCcccCCCChhHH---HHHhhccCCCCCCCCCccchhHH
Q 037442 14 SNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSP--GGKPFSFGHPSVDVV---VQRLLNWEMDPKDETNSHVDAEQ 88 (180)
Q Consensus 14 ~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp--~gk~~~~~~psv~~V---l~ry~~~~~~~~~~~~~~~e~~~ 88 (180)
.=++--+|+.+|.-++||.++|-.|= +-|...|. +..-|-|.-|....+ +.+|....+
T Consensus 278 ~la~~gkl~lsr~e~lk~iGkLf~LR---~~INL~s~lLdtPdf~W~ep~Le~iY~~~r~yleI~q-------------- 340 (399)
T KOG2861|consen 278 SLALGGKLTLSREELLKKIGKLFALR---HDINLSSGLLDTPDFYWDEPQLEPIYEATRRYLEIGQ-------------- 340 (399)
T ss_pred HHHhcCeecccHHHHHHHHHHHHHHh---eeeecccccccCcccccCchhHHHHHHHHHHHcccch--------------
Confidence 33455578899999999999997764 22222222 122466777876654 556665553
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037442 89 EAKVEQLNEQLIDLVNQLEIE 109 (180)
Q Consensus 89 ~~~~~~l~~~~~~l~~el~~~ 109 (180)
++.-||.+++=..+.++.+
T Consensus 341 --Rv~vLN~kl~~i~~~~~~l 359 (399)
T KOG2861|consen 341 --RVNVLNYKLKVIEDLLDIL 359 (399)
T ss_pred --HHHHHHHHHHHHHHHHHHH
Confidence 6666776666655554443
No 159
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=20.53 E-value=1.4e+02 Score=19.58 Aligned_cols=11 Identities=36% Similarity=0.392 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 037442 96 NEQLIDLVNQL 106 (180)
Q Consensus 96 ~~~~~~l~~el 106 (180)
+..+.+|..++
T Consensus 3 ~~~L~~L~~eL 13 (85)
T PF14357_consen 3 QELLEKLHQEL 13 (85)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 160
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=20.50 E-value=2.2e+02 Score=18.82 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 037442 89 EAKVEQLNEQLIDLVNQLEIEKKRGEML 116 (180)
Q Consensus 89 ~~~~~~l~~~~~~l~~el~~~k~~~~~l 116 (180)
...+..++..+..|-.-++.++.++..|
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l 52 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHL 52 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3455666666666666666665554433
No 161
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=20.27 E-value=4.5e+02 Score=20.96 Aligned_cols=50 Identities=26% Similarity=0.230 Sum_probs=23.9
Q ss_pred cCCCChhHHHHHhhccCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 037442 57 FGHPSVDVVVQRLLNWEMDPKDETNSHVDAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDK 118 (180)
Q Consensus 57 ~~~psv~~Vl~ry~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~ 118 (180)
-+-|++..++.|....-. ........+..++..|+++...+..+...++.
T Consensus 201 tpLP~L~~~~~rL~~~l~------------~le~~~~~~~~~l~~l~~E~~~I~~re~elq~ 250 (254)
T PF15458_consen 201 TPLPSLSECLERLRESLS------------SLEDSKSQLQQQLESLEKEKEEIEEREKELQE 250 (254)
T ss_pred CCCCchhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666655544321 12233344444555555555555444444443
No 162
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=20.02 E-value=1.1e+02 Score=25.03 Aligned_cols=35 Identities=14% Similarity=0.317 Sum_probs=23.7
Q ss_pred chhHHHHH-HH--hhhcccceeEEeecCCC--CCcc-cCCC
Q 037442 26 NGLFKKAN-EL--ATLCAAHIAIVVFSPGG--KPFS-FGHP 60 (180)
Q Consensus 26 ~gL~KKa~-EL--s~LC~v~vavivfsp~g--k~~~-~~~p 60 (180)
.-+|+.+. .+ .++-|..+||+.|+++| |.|+ ||.+
T Consensus 55 ~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~ 95 (321)
T cd01374 55 REVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDE 95 (321)
T ss_pred HHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCC
Confidence 34666643 33 45779999999999965 6665 4543
Done!