Query 037442
Match_columns 180
No_of_seqs 118 out of 1271
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 21:10:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 1.2E-39 4.2E-44 212.0 3.9 74 2-75 1-74 (77)
2 3p57_A Myocyte-specific enhanc 100.0 2.3E-39 7.8E-44 215.6 4.1 78 2-79 1-78 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 6.9E-38 2.4E-42 211.9 3.3 72 1-72 16-87 (100)
4 1hbx_A SRF, serum response fac 100.0 1E-37 3.4E-42 208.5 1.2 71 1-71 10-80 (92)
5 1k6o_B SRF, serum response fac 100.0 5.3E-37 1.8E-41 208.8 1.3 69 1-69 9-77 (103)
6 1t6f_A Geminin; coiled-coil, c 74.7 7.5 0.00026 20.5 4.4 28 91-118 8-35 (37)
7 1g6u_A Domain swapped dimer; d 71.8 9.8 0.00034 20.6 6.9 29 134-162 15-43 (48)
8 1fxk_A Prefoldin; archaeal pro 63.9 24 0.00083 22.8 6.2 13 60-72 1-13 (107)
9 2rpa_A Katanin P60 ATPase-cont 63.6 4.3 0.00015 25.6 2.2 35 29-74 16-50 (78)
10 1j1d_C Troponin I, TNI; THIN f 62.8 35 0.0012 23.6 8.0 24 132-155 54-77 (133)
11 2oa5_A Hypothetical protein BQ 62.4 32 0.0011 23.0 6.7 52 100-154 11-62 (110)
12 3fx7_A Putative uncharacterize 59.0 20 0.00068 23.3 4.8 35 135-169 5-39 (94)
13 1p9i_A Cortexillin I/GCN4 hybr 58.0 16 0.00053 18.0 3.4 26 139-164 2-27 (31)
14 3efg_A Protein SLYX homolog; x 56.8 21 0.00072 22.3 4.6 37 86-122 24-60 (78)
15 1z56_A Ligase interacting fact 56.8 11 0.00036 28.9 3.7 58 10-74 118-178 (246)
16 2hv8_D RAB11 family-interactin 56.5 30 0.001 20.8 5.1 35 129-163 16-50 (64)
17 3twe_A Alpha4H; unknown functi 56.0 16 0.00054 17.4 3.9 19 93-111 4-22 (27)
18 2yy0_A C-MYC-binding protein; 55.6 27 0.00093 20.0 4.8 29 91-119 20-48 (53)
19 1j1e_C Troponin I, TNI; THIN f 55.5 56 0.0019 23.8 7.2 24 132-155 54-77 (180)
20 3tnu_B Keratin, type II cytosk 55.4 46 0.0016 22.6 7.3 35 89-123 35-69 (129)
21 1s94_A S-syntaxin; three helix 52.7 60 0.002 23.1 9.5 67 94-164 40-106 (180)
22 2l5g_B Putative uncharacterize 52.7 27 0.00092 19.1 5.1 30 89-118 8-37 (42)
23 1go4_E MAD1 (mitotic arrest de 52.6 46 0.0016 21.8 6.3 34 90-123 12-45 (100)
24 2z5i_A TM, general control pro 52.3 31 0.0011 19.7 6.1 36 87-122 9-44 (52)
25 1deq_A Fibrinogen (alpha chain 51.6 85 0.0029 25.7 8.4 23 141-163 115-137 (390)
26 3tnu_A Keratin, type I cytoske 49.4 46 0.0016 22.7 5.8 33 90-122 38-70 (131)
27 1uii_A Geminin; human, DNA rep 43.8 59 0.002 20.5 5.6 31 91-121 47-77 (83)
28 3viq_A SWI5-dependent recombin 43.5 74 0.0025 21.6 7.7 57 96-162 6-70 (122)
29 3ghg_A Fibrinogen alpha chain; 41.8 14 0.00047 31.6 2.4 15 89-103 63-77 (562)
30 1wlq_A Geminin; coiled-coil; 2 40.7 67 0.0023 20.3 5.1 31 92-122 40-70 (83)
31 1m2d_A [2Fe-2S] ferredoxin; th 39.7 16 0.00054 24.0 2.1 28 43-71 63-91 (110)
32 3tso_C RAB11 family-interactin 39.5 67 0.0023 19.9 5.0 31 133-163 11-41 (75)
33 2lw1_A ABC transporter ATP-bin 39.5 70 0.0024 20.1 8.7 55 96-158 21-75 (89)
34 2ky6_A Mediator of RNA polymer 38.8 16 0.00056 26.2 2.1 20 36-55 116-135 (166)
35 2oxj_A Hybrid alpha/beta pepti 37.6 44 0.0015 17.3 4.3 27 92-118 3-29 (34)
36 2ke4_A CDC42-interacting prote 36.3 88 0.003 20.3 8.9 65 89-156 14-79 (98)
37 2phn_A F420-0:gamma-glutamyl l 35.6 4.8 0.00017 31.2 -1.2 28 34-61 138-165 (254)
38 2oqq_A Transcription factor HY 34.8 57 0.002 17.7 6.0 31 90-120 10-40 (42)
39 2zxx_A Geminin; coiled-coil, c 33.7 83 0.0028 19.7 4.5 28 92-119 36-63 (79)
40 2dgc_A Protein (GCN4); basic d 33.1 77 0.0026 18.7 5.1 29 90-118 30-58 (63)
41 3mq7_A Bone marrow stromal ant 32.3 1.2E+02 0.004 20.5 5.6 24 92-115 80-103 (121)
42 2dfs_A Myosin-5A; myosin-V, in 31.6 2.7E+02 0.0094 25.9 9.6 23 140-162 1020-1042(1080)
43 2zqm_A Prefoldin beta subunit 30.7 80 0.0027 20.5 4.5 13 94-106 17-29 (117)
44 2wvr_A Geminin; DNA replicatio 30.6 1.2E+02 0.004 22.6 5.6 32 91-122 116-147 (209)
45 3kp7_A Transcriptional regulat 30.6 53 0.0018 22.0 3.7 29 133-161 122-150 (151)
46 1lj9_A Transcriptional regulat 30.0 1E+02 0.0034 20.2 5.1 30 133-162 112-141 (144)
47 2zvv_Y Cyclin-dependent kinase 29.5 8.3 0.00028 18.5 -0.5 12 15-26 15-26 (26)
48 2cly_B ATP synthase D chain, m 28.6 1.5E+02 0.0052 20.9 5.9 14 131-144 125-138 (160)
49 1deb_A APC protein, adenomatou 28.6 85 0.0029 17.8 3.9 23 99-121 5-27 (54)
50 3m48_A General control protein 28.2 67 0.0023 16.5 3.4 17 91-107 8-24 (33)
51 1kd8_B GABH BLL, GCN4 acid bas 28.2 70 0.0024 16.7 4.6 19 94-112 5-23 (36)
52 1ik9_A DNA repair protein XRCC 28.1 1.8E+02 0.0063 21.5 7.4 27 137-163 173-199 (213)
53 2l5g_A GPS2 protein, G protein 27.7 74 0.0025 16.8 3.4 28 136-163 8-35 (38)
54 3mud_A DNA repair protein XRCC 27.6 1.7E+02 0.006 21.1 6.2 35 87-121 132-166 (175)
55 3mwp_A Nucleoprotein; structur 27.6 1.1E+02 0.0038 25.7 5.5 27 132-158 98-124 (577)
56 1ci6_A Transcription factor AT 27.5 98 0.0034 18.1 5.7 30 90-119 23-52 (63)
57 2k1v_A Insulin-like peptide IN 27.1 19 0.00066 17.5 0.6 10 32-41 14-23 (26)
58 2wt7_A Proto-oncogene protein 26.4 1E+02 0.0035 18.0 5.7 29 90-118 23-51 (63)
59 1a93_B MAX protein, coiled coi 26.2 76 0.0026 16.5 4.6 23 99-121 9-31 (34)
60 2aze_B Transcription factor E2 25.6 1.1E+02 0.0039 20.0 4.4 23 141-163 18-40 (106)
61 3c3f_A Alpha/beta peptide with 25.5 78 0.0027 16.3 4.3 23 92-114 3-25 (34)
62 1hjb_A Ccaat/enhancer binding 25.4 1.3E+02 0.0046 19.0 5.9 28 91-118 37-64 (87)
63 1x79_B RAB GTPase binding effe 24.9 1.6E+02 0.0054 19.7 5.8 73 90-164 6-84 (112)
64 4gmn_B 60S ribosomal protein L 24.8 17 0.00059 20.4 0.2 11 17-27 16-26 (49)
65 3sl9_C B-cell CLL/lymphoma 9 p 24.8 99 0.0034 17.3 3.5 23 131-153 5-27 (55)
66 1fxk_C Protein (prefoldin); ar 24.0 1.6E+02 0.0056 19.5 6.2 36 86-121 91-126 (133)
67 3t98_B Nucleoporin NUP58/NUP45 24.0 1.5E+02 0.0051 19.0 7.8 30 134-163 42-71 (93)
68 1nkp_B MAX protein, MYC proto- 23.9 1.3E+02 0.0045 18.4 7.6 33 90-122 47-79 (83)
69 1dh3_A Transcription factor CR 23.6 1.1E+02 0.0038 17.4 4.9 28 90-117 22-49 (55)
70 1tjl_A DNAK suppressor protein 23.6 1.5E+02 0.0052 20.7 5.1 31 133-163 29-59 (151)
71 1jnm_A Proto-oncogene C-JUN; B 23.1 1.2E+02 0.0041 17.6 5.6 33 90-122 22-54 (62)
72 2wuj_A Septum site-determining 23.0 94 0.0032 17.8 3.3 23 94-116 31-53 (57)
73 1gu4_A CAAT/enhancer binding p 22.9 1.4E+02 0.0048 18.4 5.9 34 89-122 35-68 (78)
74 3hvz_A Uncharacterized protein 22.2 50 0.0017 20.4 2.1 24 44-67 7-31 (78)
75 2k48_A Nucleoprotein; viral pr 22.0 1.8E+02 0.006 19.2 7.5 73 85-163 30-102 (107)
76 3nrf_A APAG protein; structura 22.0 4.2 0.00014 27.1 -3.2 42 11-57 21-62 (106)
77 1j1d_B Troponin T, TNT; THIN f 21.8 1.2E+02 0.0043 19.9 4.0 24 133-156 39-62 (106)
78 3teq_A Stromal interaction mol 20.7 1.9E+02 0.0063 18.9 9.1 66 97-168 28-93 (101)
79 1t2k_D Cyclic-AMP-dependent tr 20.6 1.3E+02 0.0046 17.3 5.7 30 90-119 22-51 (61)
80 1ytz_I Troponin I; muscle, THI 20.6 2.5E+02 0.0086 20.4 7.9 25 132-157 52-76 (182)
81 2fbh_A Transcriptional regulat 20.0 81 0.0028 20.6 3.0 25 133-157 121-145 (146)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1.2e-39 Score=211.98 Aligned_cols=74 Identities=38% Similarity=0.706 Sum_probs=70.3
Q ss_pred CccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHhhccCCC
Q 037442 2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNWEMD 75 (180)
Q Consensus 2 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~~~~~ 75 (180)
||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|+++.|++||+..+++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988754
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=2.3e-39 Score=215.62 Aligned_cols=78 Identities=36% Similarity=0.674 Sum_probs=74.8
Q ss_pred CccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHhhccCCCCCCC
Q 037442 2 GRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNWEMDPKDE 79 (180)
Q Consensus 2 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~~~~~~~~~ 79 (180)
||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||+|||||+|++|+|+||+++.||+||+..+++....
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~~ 78 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESR 78 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCEE
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988765544
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=6.9e-38 Score=211.86 Aligned_cols=72 Identities=36% Similarity=0.622 Sum_probs=70.0
Q ss_pred CCccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHhhcc
Q 037442 1 MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNW 72 (180)
Q Consensus 1 mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~~ 72 (180)
|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|++..|+++|...
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~ 87 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR 87 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999654
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=1e-37 Score=208.50 Aligned_cols=71 Identities=32% Similarity=0.542 Sum_probs=68.6
Q ss_pred CCccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHhhc
Q 037442 1 MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLN 71 (180)
Q Consensus 1 mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~ 71 (180)
|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+++.||++|..
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 80 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987643
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=5.3e-37 Score=208.83 Aligned_cols=69 Identities=33% Similarity=0.562 Sum_probs=67.5
Q ss_pred CCccccceeEecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHh
Q 037442 1 MGRRKIEMKMVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRL 69 (180)
Q Consensus 1 mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry 69 (180)
|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+++.||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999874
No 6
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=74.69 E-value=7.5 Score=20.50 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 037442 91 KVEQLNEQLIDLVNQLEIEKKRGEMLDK 118 (180)
Q Consensus 91 ~~~~l~~~~~~l~~el~~~k~~~~~l~~ 118 (180)
..++|+..+..-++++..++.++..|.+
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 3467888899999999999988887753
No 7
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=71.83 E-value=9.8 Score=20.59 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 134 NDLGLDELLHMKASLEKLRENLKSHIDDM 162 (180)
Q Consensus 134 ~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l 162 (180)
+++++++|..|+..|..+-+.+..-...|
T Consensus 15 egfspeelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999988776665554444443
No 8
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=63.85 E-value=24 Score=22.78 Aligned_cols=13 Identities=8% Similarity=0.130 Sum_probs=7.5
Q ss_pred CChhHHHHHhhcc
Q 037442 60 PSVDVVVQRLLNW 72 (180)
Q Consensus 60 psv~~Vl~ry~~~ 72 (180)
|.+...+.+|...
T Consensus 1 ~~~Q~~i~~f~~l 13 (107)
T 1fxk_A 1 QNVQHQLAQFQQL 13 (107)
T ss_dssp CCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 4556666666544
No 9
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=63.60 E-value=4.3 Score=25.59 Aligned_cols=35 Identities=26% Similarity=0.132 Sum_probs=29.9
Q ss_pred HHHHHHHhhhcccceeEEeecCCCCCcccCCCChhHHHHHhhccCC
Q 037442 29 FKKANELATLCAAHIAIVVFSPGGKPFSFGHPSVDVVVQRLLNWEM 74 (180)
Q Consensus 29 ~KKa~ELs~LC~v~vavivfsp~gk~~~~~~psv~~Vl~ry~~~~~ 74 (180)
.|+|.|.+.+++=+.|++.|.. +-.-|++|.....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g-----------~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQG-----------VLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH-----------HHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcChHHHHHHHHH-----------HHHHHHHHHHhcC
Confidence 6899999999999999999876 6778889987763
No 10
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=62.79 E-value=35 Score=23.62 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=18.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q 037442 132 SINDLGLDELLHMKASLEKLRENL 155 (180)
Q Consensus 132 ~l~~Ls~eeL~~l~~~Le~~~~~v 155 (180)
+|++|+.++|+++...|-..+..+
T Consensus 54 ~id~ls~~~L~e~~keLh~~I~~L 77 (133)
T 1j1d_C 54 ELAGLGFAELQDLARQLHARVDKV 77 (133)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 499999999999887776655544
No 11
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=62.39 E-value=32 Score=22.98 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 037442 100 IDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLREN 154 (180)
Q Consensus 100 ~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~ 154 (180)
++|.+++.+++.+|+.|.+.++..+. -+++-.-|+..+=+.+..+.-..+..
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~~~g~---~~p~d~~LTp~qKea~I~s~~~~Lss 62 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVKSSGA---VSSDDSILTAAKRESIIVSSSRALGA 62 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC------------CCBCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC---CCCCCccCCHHHHHHHHHHHHHHHHH
Confidence 34444444555555555554443211 12557889999988888776655543
No 12
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=59.02 E-value=20 Score=23.34 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhc
Q 037442 135 DLGLDELLHMKASLEKLRENLKSHIDDMEASSSLL 169 (180)
Q Consensus 135 ~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~~~~~~~ 169 (180)
-.+++||+.|...|+.....++.....|..+-..+
T Consensus 5 ~~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L 39 (94)
T 3fx7_A 5 QMDTEEVREFVGHLERFKELLREEVNSLSNHFHNL 39 (94)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36899999999999999999999999887665544
No 13
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=57.97 E-value=16 Score=17.99 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037442 139 DELLHMKASLEKLRENLKSHIDDMEA 164 (180)
Q Consensus 139 eeL~~l~~~Le~~~~~v~~r~~~l~~ 164 (180)
++|..|..+|+.--+.++.++++|..
T Consensus 2 dqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888887888888887753
No 14
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=56.81 E-value=21 Score=22.29 Aligned_cols=37 Identities=22% Similarity=0.065 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 037442 86 AEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKA 122 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~ 122 (180)
+|....++.||..+.+.+.+++.++.....|...++.
T Consensus 24 AfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 24 SFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888888887777777665543
No 15
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=56.77 E-value=11 Score=28.89 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=9.3
Q ss_pred EecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCcccCCC---ChhHHHHHhhccCC
Q 037442 10 MVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSFGHP---SVDVVVQRLLNWEM 74 (180)
Q Consensus 10 ~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~~~p---sv~~Vl~ry~~~~~ 74 (180)
.|+....-.+|+.||-.||-.|..+|+.--+-+=+| .+|.|+.. .+-.+-++|.+...
T Consensus 118 ~iev~~~~~itmrkri~~Itqrlg~ltL~~~~~~eI-------dLFewA~~L~q~i~~ln~k~~~~E~ 178 (246)
T 1z56_A 118 RMQDDEVWKVVMELESSAIIRKIAELTLHPVKKGEI-------DLFEMADKLYKDICCVNDSYRNIKE 178 (246)
T ss_dssp ------------------------------------------------CTTSGGGTTHHHHHHHHTTT
T ss_pred CceeCCEEEEEEeehhhHHHhhheeEEeecCccchh-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555568999999999998887775433222221 24555322 25566677776653
No 16
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=56.51 E-value=30 Score=20.80 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=29.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 129 CKKSINDLGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 129 w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
+...++++|-+||.+....-++....++..|+.|.
T Consensus 16 lAae~~~~s~deL~~~l~eqee~n~~Le~YID~LL 50 (64)
T 2hv8_D 16 LAAEISSVSRDELMEAIQKQEEINFRLQDYIDRII 50 (64)
T ss_dssp HHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44569999999999988888888888899998875
No 17
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=55.96 E-value=16 Score=17.41 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037442 93 EQLNEQLIDLVNQLEIEKK 111 (180)
Q Consensus 93 ~~l~~~~~~l~~el~~~k~ 111 (180)
.+|-++++.||+.+.++++
T Consensus 4 delykeledlqerlrklrk 22 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655543
No 18
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=55.62 E-value=27 Score=20.05 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 037442 91 KVEQLNEQLIDLVNQLEIEKKRGEMLDKA 119 (180)
Q Consensus 91 ~~~~l~~~~~~l~~el~~~k~~~~~l~~~ 119 (180)
.++.|..+...|+.++..+++++..+...
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666665555555555443
No 19
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=55.49 E-value=56 Score=23.82 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=18.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q 037442 132 SINDLGLDELLHMKASLEKLRENL 155 (180)
Q Consensus 132 ~l~~Ls~eeL~~l~~~Le~~~~~v 155 (180)
+|++|+.++|+++...|-..+..+
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~L 77 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKV 77 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 599999999999887776554443
No 20
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.43 E-value=46 Score=22.58 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Q 037442 89 EAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAK 123 (180)
Q Consensus 89 ~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~ 123 (180)
+..+.+++..+..|+.+++.++..+..|...+...
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45677888888888888888888877777666543
No 21
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=52.68 E-value=60 Score=23.11 Aligned_cols=67 Identities=10% Similarity=0.168 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037442 94 QLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEA 164 (180)
Q Consensus 94 ~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~~ 164 (180)
.+-.++..++..+..+......+.......... +.-+.---.+|..+...+..+-..|+.++..|..
T Consensus 40 ~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~----~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~ 106 (180)
T 1s94_A 40 EFFEQVEEIRAMIDKISDNVDAVKKKHSDILSA----PQTDDQMKEELEELMTDIKRTANKVRGKLKTIEL 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666655555555554443332221 1112233478888888888888899999998874
No 22
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=52.67 E-value=27 Score=19.10 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 037442 89 EAKVEQLNEQLIDLVNQLEIEKKRGEMLDK 118 (180)
Q Consensus 89 ~~~~~~l~~~~~~l~~el~~~k~~~~~l~~ 118 (180)
-+.|.+.+.++.+..+++..++++...|.+
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777777666666654
No 23
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=52.58 E-value=46 Score=21.82 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Q 037442 90 AKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAK 123 (180)
Q Consensus 90 ~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~ 123 (180)
..+..+..++..|..+.+.++++...|.-.+...
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888888888887777663
No 24
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=52.31 E-value=31 Score=19.72 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 037442 87 EQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKA 122 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~ 122 (180)
+....+.+|+..+.+|..++...+.+...+.+.+..
T Consensus 9 fAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445678899999999999999888888888776654
No 25
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=51.57 E-value=85 Score=25.66 Aligned_cols=23 Identities=13% Similarity=0.340 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037442 141 LLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 141 L~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
..+|+..+.-++.+|...+.+|.
T Consensus 115 s~eLe~~i~~lk~~V~~q~~~ir 137 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIEQVQRIN 137 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 34555566666666665555543
No 26
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.44 E-value=46 Score=22.67 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 037442 90 AKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKA 122 (180)
Q Consensus 90 ~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~ 122 (180)
..+.+++..+..|+.+++.++..+..|...+..
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e 70 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEE 70 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 456677777777777777777777766665543
No 27
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=43.85 E-value=59 Score=20.53 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 037442 91 KVEQLNEQLIDLVNQLEIEKKRGEMLDKALK 121 (180)
Q Consensus 91 ~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~ 121 (180)
...+|+.++..+..++..++..++.|.....
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777888888777777777665543
No 28
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=43.54 E-value=74 Score=21.56 Aligned_cols=57 Identities=12% Similarity=0.033 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 037442 96 NEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMK--------ASLEKLRENLKSHIDDM 162 (180)
Q Consensus 96 ~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~--------~~Le~~~~~v~~r~~~l 162 (180)
..+-..|..++..+++++..+.+..+.... -..++|..|. .+++++...++.|++.|
T Consensus 6 ~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~----------~~~~eL~~LI~KWr~asq~aaeeLf~~~~~rv~rM 70 (122)
T 3viq_A 6 LSRRLKLEKEVRNLQEQLITAETARKVEAK----------NEDKDLQTLIQKWKNAAQQAAEVLFKPMAERIRLA 70 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445555555555555555555544321 1245566654 34556666666666544
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=41.80 E-value=14 Score=31.64 Aligned_cols=15 Identities=13% Similarity=0.443 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 037442 89 EAKVEQLNEQLIDLV 103 (180)
Q Consensus 89 ~~~~~~l~~~~~~l~ 103 (180)
..+|++|+++|++++
T Consensus 63 tkrINELKnqLEdls 77 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQ 77 (562)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445666666665553
No 30
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=40.75 E-value=67 Score=20.27 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 037442 92 VEQLNEQLIDLVNQLEIEKKRGEMLDKALKA 122 (180)
Q Consensus 92 ~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~ 122 (180)
..+|+..+..+.+++..++..+..|.....+
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888777777655443
No 31
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=39.73 E-value=16 Score=24.04 Aligned_cols=28 Identities=32% Similarity=0.577 Sum_probs=19.6
Q ss_pred eeEEeecCCCCCcccCCC-ChhHHHHHhhc
Q 037442 43 IAIVVFSPGGKPFSFGHP-SVDVVVQRLLN 71 (180)
Q Consensus 43 vavivfsp~gk~~~~~~p-sv~~Vl~ry~~ 71 (180)
-.|+|+ |+|..|...+| .+..|++.+..
T Consensus 63 P~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 63 PVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp SCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred CEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 335555 88877766777 48999998754
No 32
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=39.51 E-value=67 Score=19.86 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 133 INDLGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 133 l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
+.+++-+||.++.-.++..+..-..++.+|+
T Consensus 11 y~~ltreELi~l~lk~~~~l~~k~~~v~eLE 41 (75)
T 3tso_C 11 YRSLTYEEVLQELVKHKELLRRKDTHIRELE 41 (75)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999888777766665555555443
No 33
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=39.45 E-value=70 Score=20.10 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 037442 96 NEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSH 158 (180)
Q Consensus 96 ~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r 158 (180)
+.++..|..+|+.+..+...++..+. ++.+..-+.+.+..+...++.+...+...
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~la--------dp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVA--------DASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------STTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--------CcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666655542 23344456777777777776655554433
No 34
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=38.81 E-value=16 Score=26.21 Aligned_cols=20 Identities=20% Similarity=0.537 Sum_probs=16.8
Q ss_pred hhhcccceeEEeecCCCCCc
Q 037442 36 ATLCAAHIAIVVFSPGGKPF 55 (180)
Q Consensus 36 s~LC~v~vavivfsp~gk~~ 55 (180)
+.-|.++|-+++|||+.+.|
T Consensus 116 ~~~ceiKvLiLlYs~~k~af 135 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIF 135 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSE
T ss_pred CCCcceEEEEEEEcCCccee
Confidence 44599999999999988766
No 35
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=37.60 E-value=44 Score=17.27 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 037442 92 VEQLNEQLIDLVNQLEIEKKRGEMLDK 118 (180)
Q Consensus 92 ~~~l~~~~~~l~~el~~~k~~~~~l~~ 118 (180)
+..|..+++.|..+...++.+...|..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 445556666666666555555554443
No 36
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=36.28 E-value=88 Score=20.30 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCC-cccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 037442 89 EAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGL-SKYCKKSINDLGLDELLHMKASLEKLRENLK 156 (180)
Q Consensus 89 ~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~-~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~ 156 (180)
.++...|..++..|+.+++++....+-+......+.. +. +++ ...+ ..+|.+....|+.+...+.
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~-~GD-~~s~-~~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQ-MGD-PASL-EPQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGG-GCC-GGGS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-cCC-HHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3567788889999999999888887777777776643 22 222 1222 6677777777776665543
No 37
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=35.61 E-value=4.8 Score=31.19 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=22.3
Q ss_pred HHhhhcccceeEEeecCCCCCcccCCCC
Q 037442 34 ELATLCAAHIAIVVFSPGGKPFSFGHPS 61 (180)
Q Consensus 34 ELs~LC~v~vavivfsp~gk~~~~~~ps 61 (180)
.|.-.+|++|+|||+.+.|++|-.+.|.
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~~~ 165 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGVVG 165 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccCcc
Confidence 4456789999999999999887766543
No 38
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=34.82 E-value=57 Score=17.74 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 037442 90 AKVEQLNEQLIDLVNQLEIEKKRGEMLDKAL 120 (180)
Q Consensus 90 ~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~ 120 (180)
.+..+|+....+|.+.+.-+..++.+|.+.+
T Consensus 10 ~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 10 NRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3444555555555555555555555555544
No 39
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=33.72 E-value=83 Score=19.67 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 037442 92 VEQLNEQLIDLVNQLEIEKKRGEMLDKA 119 (180)
Q Consensus 92 ~~~l~~~~~~l~~el~~~k~~~~~l~~~ 119 (180)
..+|+..+..++.++..++..+..|...
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~el 63 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLAEV 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777666655443
No 40
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=33.09 E-value=77 Score=18.70 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 037442 90 AKVEQLNEQLIDLVNQLEIEKKRGEMLDK 118 (180)
Q Consensus 90 ~~~~~l~~~~~~l~~el~~~k~~~~~l~~ 118 (180)
..+..|..++..|..++..+..+...|..
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777666666665555543
No 41
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.26 E-value=1.2e+02 Score=20.49 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 037442 92 VEQLNEQLIDLVNQLEIEKKRGEM 115 (180)
Q Consensus 92 ~~~l~~~~~~l~~el~~~k~~~~~ 115 (180)
|..|+.++.+...+++.+++.+..
T Consensus 80 I~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 80 ITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhchh
Confidence 333333444444444444433333
No 42
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=31.63 E-value=2.7e+02 Score=25.92 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037442 140 ELLHMKASLEKLRENLKSHIDDM 162 (180)
Q Consensus 140 eL~~l~~~Le~~~~~v~~r~~~l 162 (180)
+|++-...|+.-...++..+++|
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344434333
No 43
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.67 E-value=80 Score=20.49 Aligned_cols=13 Identities=31% Similarity=0.256 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 037442 94 QLNEQLIDLVNQL 106 (180)
Q Consensus 94 ~l~~~~~~l~~el 106 (180)
.++.++..+..++
T Consensus 17 ~l~~~~~~l~~q~ 29 (117)
T 2zqm_A 17 SYQQQLQLVVQQK 29 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444333
No 44
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=30.59 E-value=1.2e+02 Score=22.57 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 037442 91 KVEQLNEQLIDLVNQLEIEKKRGEMLDKALKA 122 (180)
Q Consensus 91 ~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~ 122 (180)
....|+..+..+++++..+++++..|.....+
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577778888888888888777777665443
No 45
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=30.59 E-value=53 Score=21.99 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 133 INDLGLDELLHMKASLEKLRENLKSHIDD 161 (180)
Q Consensus 133 l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~ 161 (180)
+.+++.+|+..|...|+.+..++....++
T Consensus 122 ~~~l~~~e~~~l~~~l~~l~~~l~~~~~~ 150 (151)
T 3kp7_A 122 TSDFDSKEIEKVRQVLEIIDYRIQSYTSK 150 (151)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77899999999999999998888765544
No 46
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=30.03 E-value=1e+02 Score=20.18 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 133 INDLGLDELLHMKASLEKLRENLKSHIDDM 162 (180)
Q Consensus 133 l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l 162 (180)
+..++.+++..|...|..+...+...+++.
T Consensus 112 ~~~l~~~e~~~l~~~l~~l~~~l~~~~~~~ 141 (144)
T 1lj9_A 112 LQGLSEVEISQLADYLVRMRKNVSEDWEFV 141 (144)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 778999999999999999998888776653
No 47
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=29.50 E-value=8.3 Score=18.50 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=7.9
Q ss_pred cccchhhhhccc
Q 037442 15 NSRQVTFSKRRN 26 (180)
Q Consensus 15 ~~R~~tf~KRr~ 26 (180)
+.|++.|.+|++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 456777777763
No 48
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=28.63 E-value=1.5e+02 Score=20.92 Aligned_cols=14 Identities=7% Similarity=0.366 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHH
Q 037442 131 KSINDLGLDELLHM 144 (180)
Q Consensus 131 ~~l~~Ls~eeL~~l 144 (180)
.|++.|+.+|+..-
T Consensus 125 ~P~~~mT~dd~~~a 138 (160)
T 2cly_B 125 IPFDQMTIEDLNEV 138 (160)
T ss_dssp --------------
T ss_pred CChHhCCHHHHHHh
Confidence 36889999887554
No 49
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=28.58 E-value=85 Score=17.79 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 037442 99 LIDLVNQLEIEKKRGEMLDKALK 121 (180)
Q Consensus 99 ~~~l~~el~~~k~~~~~l~~~~~ 121 (180)
|.+|..+++.+++++.-|.+.+.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 34455555555555555555544
No 50
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=28.20 E-value=67 Score=16.50 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037442 91 KVEQLNEQLIDLVNQLE 107 (180)
Q Consensus 91 ~~~~l~~~~~~l~~el~ 107 (180)
+++.|-..-..|++++.
T Consensus 8 kVEeLl~~n~~Le~EV~ 24 (33)
T 3m48_A 8 KVEELLSKNWNLENEVA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 34444444444444443
No 51
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=28.17 E-value=70 Score=16.72 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037442 94 QLNEQLIDLVNQLEIEKKR 112 (180)
Q Consensus 94 ~l~~~~~~l~~el~~~k~~ 112 (180)
.|..++++|..+...++.+
T Consensus 5 QLE~KVEeLl~~~~~Le~e 23 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNK 23 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 3344444444444333333
No 52
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=28.08 E-value=1.8e+02 Score=21.51 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 137 GLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 137 s~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
-.+=+..|...|.+++.+|++..+.|.
T Consensus 173 E~~L~~KF~~lLNeKK~KIR~lq~~Ll 199 (213)
T 1ik9_A 173 ETDLYKRFILVLNEKKTKIRSLHNKLL 199 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345567889999999999998887765
No 53
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.70 E-value=74 Score=16.82 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 136 LGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 136 Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
+++++-+.=...|+..+..+++.+++|.
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555556666666666666654
No 54
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=27.61 E-value=1.7e+02 Score=21.07 Aligned_cols=35 Identities=11% Similarity=0.090 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 037442 87 EQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALK 121 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~ 121 (180)
+-...+.+|+.++..|+.++..++.+...+.+.+.
T Consensus 132 ~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 132 YCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467778888888888888888777777665543
No 55
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=27.58 E-value=1.1e+02 Score=25.69 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=23.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 037442 132 SINDLGLDELLHMKASLEKLRENLKSH 158 (180)
Q Consensus 132 ~l~~Ls~eeL~~l~~~Le~~~~~v~~r 158 (180)
.+.+|+-+||..|..-||.++++|...
T Consensus 98 kvG~LskdeLm~LasDLeKLK~KV~rt 124 (577)
T 3mwp_A 98 RVGTLTSDDLLILAADLEKLKSKVIRT 124 (577)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCcCHHHHHHHHHHHHHHHHHHhcc
Confidence 488999999999999999999988643
No 56
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.46 E-value=98 Score=18.15 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 037442 90 AKVEQLNEQLIDLVNQLEIEKKRGEMLDKA 119 (180)
Q Consensus 90 ~~~~~l~~~~~~l~~el~~~k~~~~~l~~~ 119 (180)
.....|..++..|..++..++.+...|...
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666555555444
No 57
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=27.14 E-value=19 Score=17.49 Aligned_cols=10 Identities=30% Similarity=0.750 Sum_probs=6.9
Q ss_pred HHHHhhhccc
Q 037442 32 ANELATLCAA 41 (180)
Q Consensus 32 a~ELs~LC~v 41 (180)
.+|||.||..
T Consensus 14 msDLs~lC~~ 23 (26)
T 2k1v_A 14 MTDLSALCXX 23 (26)
T ss_dssp HHHHTTTC--
T ss_pred HHHHHHHHhh
Confidence 4799999953
No 58
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.38 E-value=1e+02 Score=17.99 Aligned_cols=29 Identities=14% Similarity=0.023 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 037442 90 AKVEQLNEQLIDLVNQLEIEKKRGEMLDK 118 (180)
Q Consensus 90 ~~~~~l~~~~~~l~~el~~~k~~~~~l~~ 118 (180)
..+..|..++..|..++..++.....|..
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655555444433
No 59
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=26.25 E-value=76 Score=16.46 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 037442 99 LIDLVNQLEIEKKRGEMLDKALK 121 (180)
Q Consensus 99 ~~~l~~el~~~k~~~~~l~~~~~ 121 (180)
....+.+++.+++++..|+..++
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 33444455555555555555443
No 60
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=25.64 E-value=1.1e+02 Score=20.02 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037442 141 LLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 141 L~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
|...+..|+..+..++..+..+.
T Consensus 18 L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 18 LQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555555554
No 61
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=25.51 E-value=78 Score=16.32 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 037442 92 VEQLNEQLIDLVNQLEIEKKRGE 114 (180)
Q Consensus 92 ~~~l~~~~~~l~~el~~~k~~~~ 114 (180)
+..|..+++.|..+...+..+..
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~ 25 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Confidence 34444455555544444443333
No 62
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.36 E-value=1.3e+02 Score=18.99 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 037442 91 KVEQLNEQLIDLVNQLEIEKKRGEMLDK 118 (180)
Q Consensus 91 ~~~~l~~~~~~l~~el~~~k~~~~~l~~ 118 (180)
+...+...+..|..++..++.+...|..
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555544444443
No 63
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.89 E-value=1.6e+02 Score=19.65 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 90 AKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSIND------LGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 90 ~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~------Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
.....|+.....+..++.++......|........-.. ..-+.. -+...|..|...+......|+.++..|.
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~--k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt 83 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDS--SHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLM 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666555555543322110000 000112 2567788888888888888988888875
Q ss_pred h
Q 037442 164 A 164 (180)
Q Consensus 164 ~ 164 (180)
.
T Consensus 84 ~ 84 (112)
T 1x79_B 84 Q 84 (112)
T ss_dssp H
T ss_pred H
Confidence 3
No 64
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum}
Probab=24.85 E-value=17 Score=20.40 Aligned_cols=11 Identities=45% Similarity=0.791 Sum_probs=8.6
Q ss_pred cchhhhhccch
Q 037442 17 RQVTFSKRRNG 27 (180)
Q Consensus 17 R~~tf~KRr~g 27 (180)
=||.|.+||.|
T Consensus 16 yQvkfRRRREG 26 (49)
T 4gmn_B 16 FQTKFKRRRQG 26 (49)
T ss_pred HhhHHhhhhcc
Confidence 47888888877
No 65
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=24.82 E-value=99 Score=17.29 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=18.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q 037442 131 KSINDLGLDELLHMKASLEKLRE 153 (180)
Q Consensus 131 ~~l~~Ls~eeL~~l~~~Le~~~~ 153 (180)
.+-++||.++|..-+.+|..+..
T Consensus 5 ~n~~gls~eqlehrerslqtlrd 27 (55)
T 3sl9_C 5 ENPDGLSQEQLEHRERSLQTLRD 27 (55)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCcccCHHHHHHHHHHHHHHHH
Confidence 45789999999999998887654
No 66
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.98 E-value=1.6e+02 Score=19.54 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 037442 86 AEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALK 121 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~ 121 (180)
.+...++..+...+..+.+++...+.....+...++
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777666666665555443
No 67
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=23.96 E-value=1.5e+02 Score=19.00 Aligned_cols=30 Identities=7% Similarity=0.120 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 134 NDLGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 134 ~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
..+++.+|......+.+..=.+.+++.+++
T Consensus 42 ~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH 71 (93)
T 3t98_B 42 SHITPQDLSMAMQKIYQTFVALAAQLQSIH 71 (93)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888877777766666777766665
No 68
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.88 E-value=1.3e+02 Score=18.39 Aligned_cols=33 Identities=9% Similarity=0.238 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 037442 90 AKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKA 122 (180)
Q Consensus 90 ~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~ 122 (180)
.-|..|..+...+..+++.++.++..|...+..
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777666543
No 69
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=23.61 E-value=1.1e+02 Score=17.42 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 037442 90 AKVEQLNEQLIDLVNQLEIEKKRGEMLD 117 (180)
Q Consensus 90 ~~~~~l~~~~~~l~~el~~~k~~~~~l~ 117 (180)
.-+..|..++..|..++..+..++..|.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777777777766666554
No 70
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=23.55 E-value=1.5e+02 Score=20.66 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 133 INDLGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 133 l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
=+.|+.++|..|...|...+..+...+....
T Consensus 29 e~~M~~~ql~~fr~~L~~~k~eL~~~l~~~~ 59 (151)
T 1tjl_A 29 EEYMNEAQLAHFRRILEAWRNQLRDEVDRTV 59 (151)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999998888876643
No 71
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=23.10 E-value=1.2e+02 Score=17.58 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 037442 90 AKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKA 122 (180)
Q Consensus 90 ~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~ 122 (180)
..+..|..++..|..++..+..+...|...+..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888877777777777665543
No 72
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.99 E-value=94 Score=17.84 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 037442 94 QLNEQLIDLVNQLEIEKKRGEML 116 (180)
Q Consensus 94 ~l~~~~~~l~~el~~~k~~~~~l 116 (180)
.+-..+..+..++..++.++..+
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555544443
No 73
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=22.94 E-value=1.4e+02 Score=18.43 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 037442 89 EAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKA 122 (180)
Q Consensus 89 ~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~ 122 (180)
+.+...+...+..|..++..++.+...|...+..
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777777777777766665543
No 74
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=22.22 E-value=50 Score=20.38 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=16.9
Q ss_pred eEEeecCCCCCcccCCCC-hhHHHH
Q 037442 44 AIVVFSPGGKPFSFGHPS-VDVVVQ 67 (180)
Q Consensus 44 avivfsp~gk~~~~~~ps-v~~Vl~ 67 (180)
-|.||.|+|..+.++..+ +.+++.
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~ 31 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAY 31 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHH
Confidence 378999999988886553 444443
No 75
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=22.03 E-value=1.8e+02 Score=19.18 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037442 85 DAEQEAKVEQLNEQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDME 163 (180)
Q Consensus 85 e~~~~~~~~~l~~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~ 163 (180)
+.+....+.+|+.++.....++.....+.+.......... ++++--++..-..-...|+.++..++..+....
T Consensus 30 ~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DP------DevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 30 DPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDP------DDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778887777777777665555444433322110 113333445555555555555555555554443
No 76
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=21.99 E-value=4.2 Score=27.12 Aligned_cols=42 Identities=26% Similarity=0.314 Sum_probs=29.9
Q ss_pred ecCCcccchhhhhccchhHHHHHHHhhhcccceeEEeecCCCCCccc
Q 037442 11 VKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSF 57 (180)
Q Consensus 11 I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~vavivfsp~gk~~~~ 57 (180)
|.++.....||.=.-..|.++.-+|+. .|++.|+|.|+-|-.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk-----~C~~a~~~~gkef~l 62 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKN-----SCLVAQSAAGQSFRL 62 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTT-----CEEEEEETTSCEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccch-----hhheeeCcCCCEEEe
Confidence 344555666777777777778778885 458999999986543
No 77
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=21.82 E-value=1.2e+02 Score=19.91 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=18.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 037442 133 INDLGLDELLHMKASLEKLRENLK 156 (180)
Q Consensus 133 l~~Ls~eeL~~l~~~Le~~~~~v~ 156 (180)
|++|+.++|+++...|-..+..+.
T Consensus 39 id~l~~~~L~e~~keLh~~I~~LE 62 (106)
T 1j1d_B 39 IDHLNEDQLREKAKELWQTIYNLE 62 (106)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999998887766555443
No 78
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=20.73 E-value=1.9e+02 Score=18.94 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 037442 97 EQLIDLVNQLEIEKKRGEMLDKALKAKGLSKYCKKSINDLGLDELLHMKASLEKLRENLKSHIDDMEASSSL 168 (180)
Q Consensus 97 ~~~~~l~~el~~~k~~~~~l~~~~~~~~~~~~w~~~l~~Ls~eeL~~l~~~Le~~~~~v~~r~~~l~~~~~~ 168 (180)
.++....+..++++++...+--.++...+. ++|+++ ..+.+...+|++.-..+++|..-=..-|.+
T Consensus 28 kql~~A~e~~eKl~KKrsS~~gs~~~ahs~-----slD~vD-~~Il~Ak~aL~evt~~l~Er~~RW~qIE~l 93 (101)
T 3teq_A 28 KQLMVAKEGAEKIKKKRNTLFGTFHVAHSS-----SLDDVD-HKILTAKQALSEATAALRERLHRWQQIEIL 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHTCG-----GGGGTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhchheeeehhcCC-----CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666655555555555443 377777 566777888888888888877654333333
No 79
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.64 E-value=1.3e+02 Score=17.26 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 037442 90 AKVEQLNEQLIDLVNQLEIEKKRGEMLDKA 119 (180)
Q Consensus 90 ~~~~~l~~~~~~l~~el~~~k~~~~~l~~~ 119 (180)
..+..|..++..|..++..+..+...|...
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666665555555555443
No 80
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=20.56 E-value=2.5e+02 Score=20.37 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=19.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Q 037442 132 SINDLGLDELLHMKASLEKLRENLKS 157 (180)
Q Consensus 132 ~l~~Ls~eeL~~l~~~Le~~~~~v~~ 157 (180)
+|++ +.++|+++...|-..+..+.+
T Consensus 52 nid~-se~~L~e~ckELh~~I~~LEe 76 (182)
T 1ytz_I 52 SLPG-SMQELQELSKKLHAKIDSVDE 76 (182)
T ss_dssp CCCC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 4888 999999998887766665543
No 81
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=20.04 E-value=81 Score=20.63 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 037442 133 INDLGLDELLHMKASLEKLRENLKS 157 (180)
Q Consensus 133 l~~Ls~eeL~~l~~~Le~~~~~v~~ 157 (180)
+..++.+|+..|...|..+..++..
T Consensus 121 ~~~l~~~e~~~l~~~l~~l~~~l~~ 145 (146)
T 2fbh_A 121 LTGIDESEQALCQQVLLRILANLEN 145 (146)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 6789999999999999988777653
Done!