BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037445
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UHT|A Chain A, Solution Structure Of The Fha Domain Of Arabidopsis
Thaliana Hypothetical Protein
Length = 118
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 77/106 (72%)
Query: 1 MEPPGMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVSGKW 60
M P ++L+ V+GPR G+ +++KPGS IR+GRIVRGN++ IKD GIS+KHL IES SG W
Sbjct: 8 MVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSGNW 67
Query: 61 TIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCTTISVQMIT 106
IQDL S NGT LNS L P T +L + D IKLG+ T+I V ++
Sbjct: 68 VIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFVS 113
>pdb|1MZK|A Chain A, Nmr Structure Of Kinase-Interacting Fha Domain Of Kinase
Associated Protein Phosphatase, Kapp In Arabidopsis
Length = 139
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 28 IRIGRIVRGNDVTIKDDGISSKH--LIIESVSGKWTIQDLDSCNGTFLNSTTLPP----- 80
+++GR V +D+ +KD +S KH + S KW + D+ S NGT +NS ++
Sbjct: 34 VKLGR-VSPSDLALKDSEVSGKHAQITWNSTKFKWELVDMGSLNGTLVNSHSISHPDLGS 92
Query: 81 ---NTPFDLRENDTIKLGDCTTISVQMITMDSQDE 112
P +L +D I LG T + V+ + SQ+E
Sbjct: 93 RKWGNPVELASDDIITLGTTTKVYVR---ISSQNE 124
>pdb|3OUN|A Chain A, Crystal Structure Of The Fhaa Fha Domain Complexed With
The Intracellular Domain Of Rv3910
Length = 157
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 16 SGETIEFKPGSKIRIGRIVRGNDVTIK--DDGISSKHLIIESVSGKWTIQDLDSCNGTFL 73
SG T + + GS I I RG D + D G+S +HL I + DL+S NGT +
Sbjct: 76 SGRTYQLREGSNI----IGRGQDAQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTV 131
Query: 74 NSTTLPPNTPFDLRENDTIKLGDCTTI 100
N+ P + L + D I+LG I
Sbjct: 132 NNA---PVQEWQLADGDVIRLGHSEII 155
>pdb|2PIE|A Chain A, Crystal Structure Of The Fha Domain Of Rnf8 In Complex
With Its Optimal Phosphopeptide
Length = 138
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 46 ISSKHLII-ESVSGKWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLG 95
IS H ++ ++ G+WTI D S NG +LN L P + + + D I+LG
Sbjct: 51 ISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLG 101
>pdb|2CSW|A Chain A, Solution Structure Of The Fha Domain Of Human Ubiquitin
Ligase Protein Rnf8
Length = 145
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 46 ISSKHLII-ESVSGKWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLG 95
IS H ++ ++ G+WTI D S NG +LN L P + + + D I+LG
Sbjct: 59 ISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLG 109
>pdb|4H87|A Chain A, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
pdb|4H87|B Chain B, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
Length = 130
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 26 SKIRIGRIVRGNDVTIKDDGISSKHLIIES-VSGK----------WTIQDLDSCNGTFLN 74
S GR+ G DV ++ +S H +++ SG + + DL S +GTFLN
Sbjct: 41 SYCLFGRL-SGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLN 99
Query: 75 STTLPPNTPFDLRENDTIKLGDCTTISV 102
T +PP T + ++ G T + +
Sbjct: 100 KTRIPPRTYCRVHVGHVVRFGGSTRLFI 127
>pdb|2LC1|A Chain A, Rv0020c_fha Structure
Length = 100
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 16 SGETIEFKPGSKIRIGRIVRGNDVTIK--DDGISSKHLIIESVSGKWTIQDLDSCNGTFL 73
SG T + + GS I I RG D + D G+S +HL I + DL+S NGT +
Sbjct: 17 SGRTYQLREGSNI----IGRGQDAQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTV 72
Query: 74 NSTTLPPNTPFDLRENDTIKLGDCTTI 100
N+ P + L + D I+LG I
Sbjct: 73 NNA---PVQEWQLADGDVIRLGHSEII 96
>pdb|3PO8|A Chain A, Structural And Functional Analysis Of
Phosphothreonine-Dependent Fha Domain Interactions
pdb|3POA|A Chain A, Structural And Functional Analysis Of
Phosphothreonine-Dependent Fha Domain Interactions
Length = 100
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 16 SGETIEFKPGSKIRIGRIVRGNDVTIK--DDGISSKHLIIESVSGKWTIQDLDSCNGTFL 73
SG T + + GS I I RG D + D G+S +HL I + DL+S NGT +
Sbjct: 14 SGRTYQLREGSNI----IGRGQDAQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTV 69
Query: 74 NSTTLPPNTPFDLRENDTIKLGDCTTI 100
N+ P + L + D I+LG I
Sbjct: 70 NNA---PVQEWQLADGDVIRLGHSEII 93
>pdb|2JPE|A Chain A, Fha Domain Of Nipp1
Length = 140
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 3 PPGMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKH--LIIESVSGKW 60
PPG+ L +V+G + E + GR D TI S H L+ +
Sbjct: 32 PPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRV 91
Query: 61 TIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCT 98
+ DL+S +GTFL L P+ P + + T+ G T
Sbjct: 92 FLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAST 129
>pdb|3VPY|A Chain A, Crystal Structure Of Arabidopsis Ddl Fha Domain
Length = 145
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 30 IGRIVRGNDVTIKDDGISSKHLIIESVSG-------------KWTIQDLDSCNGTFLNST 76
GR R D+ S +H +I+ K I DL S N T++N +
Sbjct: 42 FGRERRIADIPTDHPSCSKQHAVIQYREXEKEKPDGXXGKQVKPYIXDLGSTNKTYINES 101
Query: 77 TLPPNTPFDLRENDTIKLGDCTTISVQM 104
+ P ++L E DTIK G+ + V +
Sbjct: 102 PIEPQRYYELFEKDTIKFGNSSREYVLL 129
>pdb|3ELS|A Chain A, Crystal Structure Of Yeast Pml1p, Residues 51-204
Length = 158
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 38 DVTIKDDGISSKHLIIE--SVSG--KWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIK 93
D+ I ++ S +H +I+ +V G K + DLDS NGT LN+ +P +LR D +
Sbjct: 82 DIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLT 141
Query: 94 L 94
L
Sbjct: 142 L 142
>pdb|3ELV|A Chain A, Crystal Structure Of Full-Length Yeast Pml1p
pdb|3ELV|B Chain B, Crystal Structure Of Full-Length Yeast Pml1p
Length = 205
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 38 DVTIKDDGISSKHLIIE--SVSG--KWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIK 93
D+ I ++ S +H +I+ +V G K + DLDS NGT LN+ +P +LR D +
Sbjct: 129 DIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLT 188
Query: 94 L 94
L
Sbjct: 189 L 189
>pdb|2JKD|A Chain A, Structure Of The Yeast Pml1 Splicing Factor And Its
Integration Into The Res Complex
pdb|2JKD|B Chain B, Structure Of The Yeast Pml1 Splicing Factor And Its
Integration Into The Res Complex
Length = 187
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 38 DVTIKDDGISSKHLIIE--SVSG--KWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIK 93
D+ I ++ S +H +I+ +V G K + DLDS NGT LN+ +P +LR D +
Sbjct: 105 DIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLT 164
Query: 94 L 94
L
Sbjct: 165 L 165
>pdb|2FEZ|A Chain A, Mycobacterium Tuberculosis Embr
pdb|2FF4|A Chain A, Mycobacterium Tuberculosis Embr In Complex With Low
Affinity Phosphopeptide
pdb|2FF4|B Chain B, Mycobacterium Tuberculosis Embr In Complex With Low
Affinity Phosphopeptide
Length = 388
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 25 GSKIRIGRIVRGNDVTIKDDGISSKHLIIESVSGKWTIQDLDSCNGTFLNSTTLPPNTPF 84
+ RIGR+ ND+ + +S H +I + I DL S NG + + +
Sbjct: 305 AAATRIGRL-HDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERI--RSAV 361
Query: 85 DLRENDTIKLGD 96
L + D I++ D
Sbjct: 362 TLNDGDHIRICD 373
>pdb|3K9G|A Chain A, Crystal Structure Of A Plasmid Partition Protein From
Borrelia Burgdorferi At 2.25a Resolution, Iodide Soak
pdb|3K9H|A Chain A, Crystal Structure Of A Plasmid Partition Protein From
Borrelia Burgdorferi At 2.25a Resolution
pdb|3K9H|B Chain B, Crystal Structure Of A Plasmid Partition Protein From
Borrelia Burgdorferi At 2.25a Resolution
Length = 267
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 38 DVTIKDDGISSKHLIIESVSGKWTIQDLDSCN 69
DVT+K+ + S ++II + KW ++ LD N
Sbjct: 157 DVTLKNALLCSDYVIIPMTAEKWAVESLDLFN 188
>pdb|2JU3|A Chain A, Solution-State Nmr Structures Of Apo-Lfabp (Liver Fatty
Acid-Binding Protein)
pdb|2JU7|A Chain A, Solution-State Structures Of Oleate-Liganded Lfabp,
Protein Only
pdb|2JU8|A Chain A, Solution-State Structures Of Oleate-Liganded Lfabp, Major
Form Of 1:2 Protein-Ligand Complex
Length = 127
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 225 GKVKIESEENLEP-LEVLGVQVDGKENFRPGKETSKKCQVQVDGKEKTNVTLIAGARVTR 283
GK +++S+EN EP ++ +G+ D + GK+ ++ +GK K +T+ G++V
Sbjct: 5 GKYQVQSQENFEPFMKAMGLPED---LIQKGKDIKGVSEIVHEGK-KVKLTITYGSKVIH 60
Query: 284 SRMNALNLGFDC 295
N LG +C
Sbjct: 61 ---NEFTLGEEC 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.129 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,156,243
Number of Sequences: 62578
Number of extensions: 336698
Number of successful extensions: 620
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 24
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)