Query 037445
Match_columns 349
No_of_seqs 214 out of 1571
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 12:19:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1881 Anion exchanger adapto 99.8 3.1E-21 6.8E-26 201.7 2.4 206 6-226 157-390 (793)
2 PF00498 FHA: FHA domain; Int 99.8 2.6E-18 5.7E-23 129.5 9.6 67 28-95 1-68 (68)
3 KOG1880 Nuclear inhibitor of p 99.6 1E-16 2.2E-21 154.7 2.8 172 2-173 14-212 (337)
4 cd00060 FHA Forkhead associate 99.6 7E-15 1.5E-19 116.1 12.6 91 5-96 1-93 (102)
5 TIGR03354 VI_FHA type VI secre 99.6 3.7E-14 8E-19 142.3 13.1 90 6-98 1-98 (396)
6 COG1716 FOG: FHA domain [Signa 99.5 4.2E-13 9.2E-18 118.5 11.2 71 26-99 89-159 (191)
7 PLN02927 antheraxanthin epoxid 99.4 6.9E-13 1.5E-17 140.8 12.6 91 6-98 534-638 (668)
8 KOG1882 Transcriptional regula 99.4 3.3E-13 7.1E-18 127.7 5.2 100 5-104 173-285 (293)
9 COG3456 Predicted component of 99.3 6.5E-12 1.4E-16 126.3 9.8 93 4-99 1-100 (430)
10 smart00240 FHA Forkhead associ 99.3 4.1E-12 8.8E-17 90.7 5.6 50 28-78 1-52 (52)
11 TIGR02500 type_III_yscD type I 98.4 1.8E-06 3.9E-11 87.1 11.0 88 6-97 1-89 (410)
12 KOG0615 Serine/threonine prote 97.8 3E-05 6.5E-10 79.2 5.6 82 20-104 59-155 (475)
13 KOG0245 Kinesin-like protein [ 97.0 0.0032 7E-08 70.2 9.6 93 7-105 456-555 (1221)
14 KOG2293 Daxx-interacting prote 96.6 0.006 1.3E-07 63.9 7.8 92 7-102 432-530 (547)
15 KOG1892 Actin filament-binding 96.1 0.012 2.7E-07 65.5 7.2 88 7-98 358-449 (1629)
16 TIGR01663 PNK-3'Pase polynucle 94.3 0.1 2.2E-06 55.2 6.9 77 18-99 25-103 (526)
17 KOG0241 Kinesin-like protein [ 92.6 0.21 4.5E-06 56.2 5.9 73 26-102 467-540 (1714)
18 PRK15367 type III secretion sy 92.6 0.52 1.1E-05 48.4 8.4 85 4-97 3-87 (395)
19 cd00060 FHA Forkhead associate 74.9 14 0.0003 28.6 6.6 57 205-267 34-93 (102)
20 PF00498 FHA: FHA domain; Int 71.7 11 0.00024 27.9 5.1 52 205-256 10-64 (68)
21 PF03404 Mo-co_dimer: Mo-co ox 47.7 19 0.00042 31.3 3.1 47 173-226 3-54 (131)
22 smart00363 S4 S4 RNA-binding d 46.5 31 0.00068 23.5 3.5 26 69-96 26-52 (60)
23 COG1984 DUR1 Allophanate hydro 45.0 91 0.002 31.5 7.7 59 46-105 54-115 (314)
24 TIGR02988 YaaA_near_RecF S4 do 42.8 26 0.00055 25.9 2.7 25 69-94 34-58 (59)
25 smart00797 AHS2 Allophanate hy 42.4 1.1E+02 0.0024 30.1 7.8 40 66-105 52-94 (280)
26 PF01479 S4: S4 domain; Inter 41.6 21 0.00046 25.0 2.0 23 69-92 26-48 (48)
27 PF02626 AHS2: Allophanate hyd 41.5 54 0.0012 32.1 5.4 39 66-104 52-93 (271)
28 PF03366 YEATS: YEATS family; 39.1 44 0.00094 27.2 3.7 21 204-224 43-63 (84)
29 PRK15367 type III secretion sy 35.4 84 0.0018 32.7 5.9 68 191-279 18-93 (395)
30 PRK11507 ribosome-associated p 34.3 65 0.0014 25.7 3.9 27 236-268 37-64 (70)
31 PF13275 S4_2: S4 domain; PDB: 33.3 30 0.00065 27.1 1.8 29 69-98 33-61 (65)
32 TIGR00724 urea_amlyse_rel biot 33.3 1.7E+02 0.0037 29.4 7.5 40 66-105 74-117 (314)
33 PRK01777 hypothetical protein; 33.0 44 0.00095 27.9 2.9 31 64-97 46-76 (95)
34 cd00165 S4 S4/Hsp/ tRNA synthe 32.2 55 0.0012 22.9 3.0 29 68-97 25-53 (70)
35 COG2501 S4-like RNA binding pr 32.2 73 0.0016 25.7 3.9 33 60-97 32-64 (73)
36 PRK11507 ribosome-associated p 31.1 69 0.0015 25.6 3.5 29 69-98 37-65 (70)
37 TIGR03354 VI_FHA type VI secre 29.7 1.3E+02 0.0029 30.9 6.3 54 214-279 46-103 (396)
38 PF10330 Stb3: Putative Sin3 b 28.5 42 0.0009 28.3 2.0 23 196-218 54-76 (92)
39 TIGR01687 moaD_arch MoaD famil 28.3 58 0.0013 25.6 2.8 27 70-96 57-83 (88)
40 PF11101 DUF2884: Protein of u 26.3 77 0.0017 30.1 3.6 41 37-79 1-42 (229)
41 cd00754 MoaD Ubiquitin domain 25.1 75 0.0016 24.1 2.8 26 69-96 50-75 (80)
42 COG1188 Ribosome-associated he 25.1 86 0.0019 26.7 3.3 26 70-97 35-60 (100)
43 PRK06437 hypothetical protein; 23.8 1E+02 0.0022 23.7 3.3 23 70-94 38-60 (67)
44 PF14451 Ub-Mut7C: Mut7-C ubiq 23.1 88 0.0019 25.3 2.9 25 70-96 51-75 (81)
45 KOG1999 RNA polymerase II tran 23.0 2.7E+02 0.0058 32.4 7.5 85 169-256 360-465 (1024)
46 cd01764 Urm1 Urm1-like ubuitin 22.4 73 0.0016 26.2 2.4 27 71-97 62-90 (94)
47 PF14478 DUF4430: Domain of un 22.4 73 0.0016 24.3 2.2 23 72-94 44-67 (68)
48 PRK10626 hypothetical protein; 21.9 97 0.0021 30.2 3.4 42 35-79 22-64 (239)
49 PF14451 Ub-Mut7C: Mut7-C ubiq 21.1 82 0.0018 25.5 2.3 21 236-256 50-70 (81)
50 cd04463 S1_EF_like S1_EF_like: 20.2 99 0.0021 22.4 2.5 44 217-264 3-46 (55)
51 COG1188 Ribosome-associated he 20.1 1.1E+02 0.0025 26.0 3.1 37 236-288 34-70 (100)
No 1
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=99.81 E-value=3.1e-21 Score=201.67 Aligned_cols=206 Identities=23% Similarity=0.327 Sum_probs=156.4
Q ss_pred EEEEEEeCCCCCeEEEecCCCeEEEcCCCCCCCEEeCCCCCCcccEEEEEEC-----------CEEEEEeCCCCCceEEc
Q 037445 6 MKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVS-----------GKWTIQDLDSCNGTFLN 74 (349)
Q Consensus 6 l~L~Vi~Gp~~G~~~~L~~g~~~tIGR~~~~cDIvL~DpsVSR~HA~I~~~~-----------g~~~L~DLgStNGTfVN 74 (349)
+.|.+++.........|.....++|||. ..||+.+.||+|||.||.|+|.. .+|+|+|||||||||+|
T Consensus 157 ~~lEvlKeg~iiet~~l~~~~~~~fgr~-~~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~N 235 (793)
T KOG1881|consen 157 FQLEVLKEGAIIETEDLKGAAACLFGRL-GGCDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLN 235 (793)
T ss_pred hhhhhhccCceeeeeecccceeEEeccc-CCCccccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceec
Confidence 4788888887777888887889999999 79999999999999999999952 25999999999999999
Q ss_pred CeecCCCCcEEecCCCEEEECCcceEEEEEEeCCCccccccCCCCCCcccCCCCC----CCcccc-ccccccccCCcccc
Q 037445 75 STTLPPNTPFDLRENDTIKLGDCTTISVQMITMDSQDESVAKPKRNPRRQANVPG----TSSVRA-TSGRKKAEAEPVET 149 (349)
Q Consensus 75 G~rI~~~~~v~L~~GD~I~LG~st~~~v~f~~~d~~~eet~~lt~~~~~~~~~~~----~spV~a-ss~RKk~kaepve~ 149 (349)
..++++..+..++.|++++||++++.|+...+.++ .+...++........+..+ ...++. ...|.-..+.....
T Consensus 236 K~rvppk~yir~~Vg~v~~fggsTrl~i~Qgp~eD-~Epe~dls~te~~e~r~~~~E~~e~~~~~~~e~r~le~~q~~~~ 314 (793)
T KOG1881|consen 236 KDRVPPKVYIRDRVGHVARFGGSTRLYIFQGPEED-EEPESDLSVTELKECREKKKELSDAEVEAAAEERILEAAQADDE 314 (793)
T ss_pred cccCCCcchhhhhHHHHHHhcCceEEEEeeCCCcC-CCchhhcCHHHHHHHHHHHHhhhHhhhhhhHHHhhHHHHhhhhh
Confidence 99999999999999999999999999997776655 3455556555444333211 111111 02232233444557
Q ss_pred cCcCCCccchhhhccccCCCccCCcccCCCCceeeeeccccceee------------ccCccccceeeEEEecCCcceee
Q 037445 150 LGLEGGQIEDQSRINKKGRGRNKNLQEMPPQSVEVQVESKENLEL------------EEGGEIESESKITKKGRGRSKDL 217 (349)
Q Consensus 150 lg~e~g~~e~e~~~~~~gr~rn~~~~~~~~~s~~~~~~~~e~~~~------------~eg~~~~~~~~~~~~~~~~~~~~ 217 (349)
.|++|||.||+++++ .-+-+.++- ..+++|.+|+ ++| .+|+|.+-+-|-|-|-|.
T Consensus 315 ~g~swGmgeDa~ed~---------~~e~et~~~--~~~e~E~~y~qdPkk~l~~ffereg--~~l~~~~deq~~~~w~c~ 381 (793)
T KOG1881|consen 315 EGCSWGMGEDADEDD---------ADEVETDAE--AMEEREATYIQDPKKALLGFFEREG--EDLEYEFDEQGHGKWVCR 381 (793)
T ss_pred cCCcccCCccccccc---------ccccccccc--cccccccccccCHHHHHHHHHHhhh--hhhhhhhhhcCCceEEee
Confidence 899999999998872 121111111 2467888888 899 899999999999999999
Q ss_pred EEeeecCCc
Q 037445 218 QEMPLDGGK 226 (349)
Q Consensus 218 ~~~~~~~~~ 226 (349)
.++|++.-.
T Consensus 382 v~lp~~~~~ 390 (793)
T KOG1881|consen 382 VELPVDDSG 390 (793)
T ss_pred eeeeccccc
Confidence 999998643
No 2
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.77 E-value=2.6e-18 Score=129.53 Aligned_cols=67 Identities=37% Similarity=0.647 Sum_probs=63.2
Q ss_pred EEEcCCCCCCCEEeCCCCCCcccEEEEEECC-EEEEEeCCCCCceEEcCeecCCCCcEEecCCCEEEEC
Q 037445 28 IRIGRIVRGNDVTIKDDGISSKHLIIESVSG-KWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLG 95 (349)
Q Consensus 28 ~tIGR~~~~cDIvL~DpsVSR~HA~I~~~~g-~~~L~DLgStNGTfVNG~rI~~~~~v~L~~GD~I~LG 95 (349)
++|||+ +.|||+|+++.|||.||.|.+..+ .|+|+|++|+|||||||+++.++.++.|++||+|+||
T Consensus 1 ~~iGR~-~~~di~l~~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRS-PDCDIVLPDPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESS-TTSSEEETSTTSSTTSEEEEEETTEEEEEEESSSSS-EEETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCC-CCCCEEECCHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEEcC
Confidence 589999 899999999999999999999999 9999999999999999999999999999999999998
No 3
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=99.62 E-value=1e-16 Score=154.73 Aligned_cols=172 Identities=20% Similarity=0.215 Sum_probs=125.0
Q ss_pred CCCcEEEEEEeCCCCCeEEEecCCCeEEEcCCCCCCCEEeCCCCCCcccEEEEEE--CCEEEEEeCCCCCceEEcCeecC
Q 037445 2 EPPGMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESV--SGKWTIQDLDSCNGTFLNSTTLP 79 (349)
Q Consensus 2 ~PP~l~L~Vi~Gp~~G~~~~L~~g~~~tIGR~~~~cDIvL~DpsVSR~HA~I~~~--~g~~~L~DLgStNGTfVNG~rI~ 79 (349)
+|++++|.|+.++.......+..++.+.|||....||++|+|.++||.||.+.+. ..+++|+||+|+||||+...+|.
T Consensus 14 pp~g~hldv~k~d~li~kl~iddkr~y~Fgrn~q~~df~idh~scSrvhaa~vyhkhl~~~~lidl~s~hgtf~g~~rL~ 93 (337)
T KOG1880|consen 14 PPAGLHLDVVKGDKLIQKLIIDDKRRYLFGRNHQTCDFVIDHASCSRVHAALVYHKHLSRIFLIDLGSTHGTFLGNERLE 93 (337)
T ss_pred CCCCCceeeeecchhHHHHHhhhhhhhhhccCCCccceEeecchhhhhHhhhhhhhccceEEEEEccCCcceeeeeeeec
Confidence 5788999999998776666666678899999988999999999999999999885 56799999999999999999999
Q ss_pred CCCcEEecCCCEEEECCcceEEEEEEe--C-----CC-c-cccccC-C----------CCCCcccCCCCCCCccccc---
Q 037445 80 PNTPFDLRENDTIKLGDCTTISVQMIT--M-----DS-Q-DESVAK-P----------KRNPRRQANVPGTSSVRAT--- 136 (349)
Q Consensus 80 ~~~~v~L~~GD~I~LG~st~~~v~f~~--~-----d~-~-~eet~~-l----------t~~~~~~~~~~~~spV~as--- 136 (349)
+..+++|+.|..++||.+++.|..-.- . .+ + .+.... + +.++...++....+-.+..
T Consensus 94 ~~~p~~l~i~~~~~fgasTr~y~lr~k~~~~~~~~~d~p~~~~~d~~lp~~~~e~e~~~~~nt~~n~~is~~~~~~g~~~ 173 (337)
T KOG1880|consen 94 PHKPVQLEIGSTFHFGASTRIYLLREKTEHHSLVSRDPPPAEISDEGLPPDATELDNLTEYNTAHNRRISSLGISGGNML 173 (337)
T ss_pred cCCCccccCCceEEEeccceeeeeecccCccccccCCCCcccccCCCCCCchhhhHHHHHHHHhhhhhheeeeeccCcch
Confidence 999999999999999999998874321 0 00 0 000001 1 1111222222222222211
Q ss_pred --cccccccCCcccccCcCCCccchhhhccccCCCccCC
Q 037445 137 --SGRKKAEAEPVETLGLEGGQIEDQSRINKKGRGRNKN 173 (349)
Q Consensus 137 --s~RKk~kaepve~lg~e~g~~e~e~~~~~~gr~rn~~ 173 (349)
...|+.+.--+.++..+.-+|++||++|+.|||||..
T Consensus 174 ~q~~~kk~~~~~~vtf~~~~~iinpeqvdp~v~rfrnmv 212 (337)
T KOG1880|consen 174 IQRKEKKGSNARVVTFMKKVRVINPEQVDPNVARFRNMV 212 (337)
T ss_pred hhhhhhhcccccceeeeccceeeCHhhcCchhhhhhcCc
Confidence 1222222223458889999999999999999999983
No 4
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.62 E-value=7e-15 Score=116.06 Aligned_cols=91 Identities=35% Similarity=0.639 Sum_probs=84.2
Q ss_pred cEEEEEEeCCCCCeEEEecCCCeEEEcCCCCCC-CEEeCCCCCCcccEEEEEEC-CEEEEEeCCCCCceEEcCeecCCCC
Q 037445 5 GMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGN-DVTIKDDGISSKHLIIESVS-GKWTIQDLDSCNGTFLNSTTLPPNT 82 (349)
Q Consensus 5 ~l~L~Vi~Gp~~G~~~~L~~g~~~tIGR~~~~c-DIvL~DpsVSR~HA~I~~~~-g~~~L~DLgStNGTfVNG~rI~~~~ 82 (349)
++.|.+..++..+..+.|..+..++|||+ ..| +|.|+++.||+.||.|.+.. +.|++.|+.|.||||||++++..+.
T Consensus 1 ~~~L~~~~~~~~~~~~~l~~~~~~~iGr~-~~~~~i~l~~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~~~~~~~~ 79 (102)
T cd00060 1 VPRLVVLSGDASGRRYYLDPGGTYTIGRD-SDNCDIVLDDPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNGQRVSPGE 79 (102)
T ss_pred CeEEEEecCCCceeEEEECCCCeEEECcC-CCcCCEEcCCCCeeCcceEEEEcCCCCEEEEECCCCCCeEECCEECCCCC
Confidence 36788998888889999996578999999 788 99999999999999999988 8999999999999999999999878
Q ss_pred cEEecCCCEEEECC
Q 037445 83 PFDLRENDTIKLGD 96 (349)
Q Consensus 83 ~v~L~~GD~I~LG~ 96 (349)
.+.|.+||.|.||.
T Consensus 80 ~~~l~~gd~i~ig~ 93 (102)
T cd00060 80 PVRLRDGDVIRLGN 93 (102)
T ss_pred cEECCCCCEEEECC
Confidence 89999999999996
No 5
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.55 E-value=3.7e-14 Score=142.30 Aligned_cols=90 Identities=30% Similarity=0.500 Sum_probs=80.4
Q ss_pred EEEEEEeC----CCCCeEEEecCCCeEEEcCCCCCCCEEeCCCC--CCcccEEEEEECCEEEEEeCCCCCceEEc--Cee
Q 037445 6 MKLIMVRG----PRSGETIEFKPGSKIRIGRIVRGNDVTIKDDG--ISSKHLIIESVSGKWTIQDLDSCNGTFLN--STT 77 (349)
Q Consensus 6 l~L~Vi~G----p~~G~~~~L~~g~~~tIGR~~~~cDIvL~Dps--VSR~HA~I~~~~g~~~L~DLgStNGTfVN--G~r 77 (349)
+.|.|++. +..+..+.|.. ..++|||+ ++|||+|+|+. ||+.||.|.+.++.|+|+|+ |+|||||| |.+
T Consensus 1 L~L~v~n~~~l~~g~~~~~~f~~-~~~~IGR~-~~~d~~l~d~~~~VS~~Ha~I~~~~g~~~l~Dl-StNGT~VN~sg~~ 77 (396)
T TIGR03354 1 LVLTVLNAHQLTPGIAAQKTFGT-NGGTIGRS-EDCDWVLPDPERHVSGRHARIRYRDGAYLLTDL-STNGVFLNGSGSP 77 (396)
T ss_pred CEEEEeccccCCCCcceEEEECC-CCEEEecC-CCCCEEeCCCCCCcchhhcEEEEECCEEEEEEC-CCCCeEECCCCCC
Confidence 46778875 34566899984 56899999 79999999998 99999999999999999999 99999999 899
Q ss_pred cCCCCcEEecCCCEEEECCcc
Q 037445 78 LPPNTPFDLRENDTIKLGDCT 98 (349)
Q Consensus 78 I~~~~~v~L~~GD~I~LG~st 98 (349)
+.++.++.|.+||+|+||.+.
T Consensus 78 l~~~~~~~L~~GD~I~iG~~~ 98 (396)
T TIGR03354 78 LGRGNPVRLEQGDRLRLGDYE 98 (396)
T ss_pred CCCCCceEcCCCCEEEECCEE
Confidence 998889999999999999973
No 6
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.46 E-value=4.2e-13 Score=118.49 Aligned_cols=71 Identities=30% Similarity=0.481 Sum_probs=67.5
Q ss_pred CeEEEcCCCCCCCEEeCCCCCCcccEEEEEECCEEEEEeCCCCCceEEcCeecCCCCcEEecCCCEEEECCcce
Q 037445 26 SKIRIGRIVRGNDVTIKDDGISSKHLIIESVSGKWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCTT 99 (349)
Q Consensus 26 ~~~tIGR~~~~cDIvL~DpsVSR~HA~I~~~~g~~~L~DLgStNGTfVNG~rI~~~~~v~L~~GD~I~LG~st~ 99 (349)
..++|||+ +++++++++..|||+||.|.+.+..|+++|++|+|||||||.++.+ .+.|++||.|.||....
T Consensus 89 ~~~tigr~-~~~~i~~~~~~vSR~Ha~l~~~~~~~~~~d~~S~nGt~vn~~~v~~--~~~l~~gd~i~i~~~~~ 159 (191)
T COG1716 89 PVTTIGRD-PDNDIVLDDDVVSRRHAELRREGNEVFLEDLGSTNGTYVNGEKVRQ--RVLLQDGDVIRLGGTLA 159 (191)
T ss_pred ceEEeccC-CCCCEEcCCCccccceEEEEEeCCceEEEECCCCcceEECCeEccC--cEEcCCCCEEEECccce
Confidence 47999998 8999999999999999999999999999999999999999999985 69999999999999865
No 7
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.44 E-value=6.9e-13 Score=140.82 Aligned_cols=91 Identities=24% Similarity=0.338 Sum_probs=76.4
Q ss_pred EEEEEEeCCC-CCeEEEe---cCCCeEEEcCCCCCCCE-----EeCCCCCCcccEEEEEECCEEEEEeCCCCCceEEcCe
Q 037445 6 MKLIMVRGPR-SGETIEF---KPGSKIRIGRIVRGNDV-----TIKDDGISSKHLIIESVSGKWTIQDLDSCNGTFLNST 76 (349)
Q Consensus 6 l~L~Vi~Gp~-~G~~~~L---~~g~~~tIGR~~~~cDI-----vL~DpsVSR~HA~I~~~~g~~~L~DLgStNGTfVNG~ 76 (349)
|.|....... .-+.+.| . ..+++|||. +.||+ +|+++.||+.||+|.+.++.|||+||+|+|||||||.
T Consensus 534 w~l~~~~~~~~~~~~~~l~~~~-~~p~~iG~~-~~~~~~~~~i~i~~~~vS~~Ha~i~~~~~~~~~~Dl~S~nGT~v~~~ 611 (668)
T PLN02927 534 WYLIPHGDDCCVSETLCLTKDE-DQPCIVGSE-PDQDFPGMRIVIPSSQVSKMHARVIYKDGAFFLMDLRSEHGTYVTDN 611 (668)
T ss_pred eEEEecCCCCcccceeeeecCC-CCCeEecCC-CCcCCCCceEEecCCccChhHeEEEEECCEEEEEECCCCCccEEeCC
Confidence 5566544332 2355777 4 678999999 79985 9999999999999999999999999999999999876
Q ss_pred e-----cCCCCcEEecCCCEEEECCcc
Q 037445 77 T-----LPPNTPFDLRENDTIKLGDCT 98 (349)
Q Consensus 77 r-----I~~~~~v~L~~GD~I~LG~st 98 (349)
+ +.|+.++.|++||+|+||+..
T Consensus 612 ~~~r~~~~p~~~~~l~~~d~I~~g~~~ 638 (668)
T PLN02927 612 EGRRYRATPNFPARFRSSDIIEFGSDK 638 (668)
T ss_pred CCceEecCCCCceEeCCCCEEEeCCCc
Confidence 6 567889999999999999963
No 8
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.38 E-value=3.3e-13 Score=127.72 Aligned_cols=100 Identities=28% Similarity=0.315 Sum_probs=85.3
Q ss_pred cEEEEEEeCCCCCeEEEecCCCeEEEcCCCCCCCEEeCCCCCCcccEEEEEEC------C-------EEEEEeCCCCCce
Q 037445 5 GMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVS------G-------KWTIQDLDSCNGT 71 (349)
Q Consensus 5 ~l~L~Vi~Gp~~G~~~~L~~g~~~tIGR~~~~cDIvL~DpsVSR~HA~I~~~~------g-------~~~L~DLgStNGT 71 (349)
.|.|...++...+....+.....+++||.-.-.||.++||++|.+||+|+|.. + ..||.||+|+|||
T Consensus 173 RwrLy~fk~~e~l~~l~iHrqs~yL~gRerkIaDi~idhpScSKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS~NgT 252 (293)
T KOG1882|consen 173 RWRLYPFKCYEVLPVLYIHRQSCYLDGRERKIADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGSGNGT 252 (293)
T ss_pred heecccccCCcccchheeeeeeeeecCceeeeeccCCCCccccccceeeeeeecccccCCCccceeeeeEEEecCCCCcc
Confidence 46777777777776777777788999998667899999999999999999852 1 5799999999999
Q ss_pred EEcCeecCCCCcEEecCCCEEEECCcceEEEEE
Q 037445 72 FLNSTTLPPNTPFDLRENDTIKLGDCTTISVQM 104 (349)
Q Consensus 72 fVNG~rI~~~~~v~L~~GD~I~LG~st~~~v~f 104 (349)
|||..+|.+..++.|..+|+|+||.+..-|+.+
T Consensus 253 fLNnk~IepqRYyEL~ekDvlkfgfs~rEyvll 285 (293)
T KOG1882|consen 253 FLNNKVIEPQRYYELREKDVLKFGFSSREYVLL 285 (293)
T ss_pred eecCcccCchheeeeecCceeeeccchHHHHHH
Confidence 999999999999999999999999776555533
No 9
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.31 E-value=6.5e-12 Score=126.31 Aligned_cols=93 Identities=25% Similarity=0.335 Sum_probs=78.5
Q ss_pred CcEEEEEEeCC----CCCeEEEecCCCeEEEcCCCCCCCEEeCCC--CCCcccEEEEEECCEEEEEeCCCCCceEEcCee
Q 037445 4 PGMKLIMVRGP----RSGETIEFKPGSKIRIGRIVRGNDVTIKDD--GISSKHLIIESVSGKWTIQDLDSCNGTFLNSTT 77 (349)
Q Consensus 4 P~l~L~Vi~Gp----~~G~~~~L~~g~~~tIGR~~~~cDIvL~Dp--sVSR~HA~I~~~~g~~~L~DLgStNGTfVNG~r 77 (349)
|.++|.|++.. ..-....+.. ....|||+ ++|||+|+|+ .||+.||.|.++++.|||.|. |.+||||||..
T Consensus 1 ~~lsL~vtn~~~l~sG~~aq~~f~~-~~g~IGrs-~dcdW~i~D~~~~VS~~Hc~I~~~dg~f~L~Dt-S~g~l~VNgs~ 77 (430)
T COG3456 1 PTLSLQVTNAQKLESGKAAQKLFDR-GGGVIGRS-PDCDWQIDDPERFVSKQHCTISYRDGGFCLTDT-SNGGLLVNGSD 77 (430)
T ss_pred CceEEEEeccccCCCchhhhhhhhc-CCcccccC-CCCCccccCcccccchhheEEEecCCeEEEEec-CCCceeecccc
Confidence 35788888863 2223556653 45789999 8999999987 999999999999999999998 68999999999
Q ss_pred cCCCCc-EEecCCCEEEECCcce
Q 037445 78 LPPNTP-FDLRENDTIKLGDCTT 99 (349)
Q Consensus 78 I~~~~~-v~L~~GD~I~LG~st~ 99 (349)
+..+.. .+|+.||.|.||.+.+
T Consensus 78 ~~~g~~~~RLqqGd~i~iG~y~i 100 (430)
T COG3456 78 LPLGEGSARLQQGDEILIGRYII 100 (430)
T ss_pred cCCCCCccccccCCEEeeccEEE
Confidence 988887 9999999999999843
No 10
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.30 E-value=4.1e-12 Score=90.68 Aligned_cols=50 Identities=34% Similarity=0.534 Sum_probs=46.3
Q ss_pred EEEcCCCC-CCCEEeCCCCCCcccEEEEEECCE-EEEEeCCCCCceEEcCeec
Q 037445 28 IRIGRIVR-GNDVTIKDDGISSKHLIIESVSGK-WTIQDLDSCNGTFLNSTTL 78 (349)
Q Consensus 28 ~tIGR~~~-~cDIvL~DpsVSR~HA~I~~~~g~-~~L~DLgStNGTfVNG~rI 78 (349)
++|||. + .|++.++++.||+.||.|.++... |+|.|++|+|||||||+++
T Consensus 1 ~~iGr~-~~~~~i~~~~~~vs~~H~~i~~~~~~~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRS-SEDCDIQLPGPSISRRHAEIVYDGGGRFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCC-CCCCCEEeCCCCcchhHcEEEECCCCeEEEEECCCCCCeeECCEEC
Confidence 479999 6 999999999999999999998765 9999999999999999975
No 11
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=98.40 E-value=1.8e-06 Score=87.13 Aligned_cols=88 Identities=18% Similarity=0.354 Sum_probs=75.6
Q ss_pred EEEEEEeCCCCCeEEEecCCCeEEEc-CCCCCCCEEeCCCCCCcccEEEEEECCEEEEEeCCCCCceEEcCeecCCCCcE
Q 037445 6 MKLIMVRGPRSGETIEFKPGSKIRIG-RIVRGNDVTIKDDGISSKHLIIESVSGKWTIQDLDSCNGTFLNSTTLPPNTPF 84 (349)
Q Consensus 6 l~L~Vi~Gp~~G~~~~L~~g~~~tIG-R~~~~cDIvL~DpsVSR~HA~I~~~~g~~~L~DLgStNGTfVNG~rI~~~~~v 84 (349)
+.|+|++|+..|..+.|..+. ++|| ++ .+|||+|.|+.||+.||.|.....++.+.+ +..+.++||.++.-....
T Consensus 1 ~~lrvl~G~~~G~~~~L~~g~-~~iG~~~-~~~di~L~d~~~~~~h~~l~v~~~~~~l~~--~~~~~~~~g~~~~~~~g~ 76 (410)
T TIGR02500 1 WKLRVLSGPHRGAELPLPEGN-LVLGTDA-ADCDIVLSDGGIAAVHVSLHVRLEGVTLAG--AVEPAWEEGGVLPDEEGT 76 (410)
T ss_pred CEEEEecCCCCCcEEECCCCc-eEeccCC-CCcEEEeCCCCccchheEEEEcCceEEEec--CCcceeECCcccccCCCC
Confidence 469999999999999999665 9999 88 899999999999999999999999999886 466799999444434467
Q ss_pred EecCCCEEEECCc
Q 037445 85 DLRENDTIKLGDC 97 (349)
Q Consensus 85 ~L~~GD~I~LG~s 97 (349)
.|..+..|.+|..
T Consensus 77 ~l~~~~~l~~g~~ 89 (410)
T TIGR02500 77 PLPSGTPLLVAGV 89 (410)
T ss_pred ccCCCCceeccee
Confidence 7888889999876
No 12
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=3e-05 Score=79.16 Aligned_cols=82 Identities=23% Similarity=0.295 Sum_probs=68.1
Q ss_pred EEecCCCeEEEcCCCCCCCEEeCCCCCCcccEEEEEE---------------CCEEEEEeCCCCCceEEcCeecCCCCcE
Q 037445 20 IEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESV---------------SGKWTIQDLDSCNGTFLNSTTLPPNTPF 84 (349)
Q Consensus 20 ~~L~~g~~~tIGR~~~~cDIvL~DpsVSR~HA~I~~~---------------~g~~~L~DLgStNGTfVNG~rI~~~~~v 84 (349)
+.+. ...|++||. +.||+.+....+|..|..|..- ...+|+.|. |+||||||...+..+...
T Consensus 59 ~d~~-nd~f~fGR~-~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~Dh-S~nGT~VN~e~i~k~~~r 135 (475)
T KOG0615|consen 59 IDLA-NDEFTFGRG-DSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDH-SRNGTFVNDEMIGKGLSR 135 (475)
T ss_pred ceec-cceEEecCC-CcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEec-ccCcccccHhHhhccccc
Confidence 4444 578999999 8999999999899999888643 247999997 999999999999999999
Q ss_pred EecCCCEEEECCcceEEEEE
Q 037445 85 DLRENDTIKLGDCTTISVQM 104 (349)
Q Consensus 85 ~L~~GD~I~LG~st~~~v~f 104 (349)
.|.+||.|.|+.+....+.|
T Consensus 136 ~lkN~dei~is~p~~~~~v~ 155 (475)
T KOG0615|consen 136 ILKNGDEISISIPALKIFVF 155 (475)
T ss_pred cccCCCEEEeccchhheeee
Confidence 99999999999884443333
No 13
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.98 E-value=0.0032 Score=70.17 Aligned_cols=93 Identities=23% Similarity=0.310 Sum_probs=67.9
Q ss_pred EEEEEeCC--CCCe-EEEecCCCeEEEcCCC--CCCCEEeCCCCCCcccEEEEEECCE--EEEEeCCCCCceEEcCeecC
Q 037445 7 KLIMVRGP--RSGE-TIEFKPGSKIRIGRIV--RGNDVTIKDDGISSKHLIIESVSGK--WTIQDLDSCNGTFLNSTTLP 79 (349)
Q Consensus 7 ~L~Vi~Gp--~~G~-~~~L~~g~~~tIGR~~--~~cDIvL~DpsVSR~HA~I~~~~g~--~~L~DLgStNGTfVNG~rI~ 79 (349)
+|+=++-+ ..+. .+.|. ....+|||.. ...||+|....|--.||.|.-.++. +.|.-.. .--|||||+.|.
T Consensus 456 hLVNLneDPllSe~LlY~ik-eG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~e-~aetyVNGk~v~ 533 (1221)
T KOG0245|consen 456 HLVNLNEDPLLSECLLYYIK-EGETRVGREDASSRQDIVLSGQLIREQHCSIRNEGGNDVVTLEPCE-DAETYVNGKLVT 533 (1221)
T ss_pred ceeccCCCchhhccEEEEec-cCceecCCCCcccCCceEecchhhhhhceEEEecCCCceEEeccCC-ccceeEccEEcC
Confidence 44444433 2333 34455 4568999864 3469999999999999999998776 6666542 245999999998
Q ss_pred CCCcEEecCCCEEEECCcceEEEEEE
Q 037445 80 PNTPFDLRENDTIKLGDCTTISVQMI 105 (349)
Q Consensus 80 ~~~~v~L~~GD~I~LG~st~~~v~f~ 105 (349)
. +..|+.||.|.||... +++|.
T Consensus 534 e--p~qL~~GdRiilG~~H--~frfn 555 (1221)
T KOG0245|consen 534 E--PTQLRSGDRIILGGNH--VFRFN 555 (1221)
T ss_pred C--cceeccCCEEEEcCce--eEEec
Confidence 5 8999999999999974 44453
No 14
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=96.62 E-value=0.006 Score=63.94 Aligned_cols=92 Identities=18% Similarity=0.270 Sum_probs=71.5
Q ss_pred EEEEEeCCCCCeEEEecCCCeEEEcCCCCCCCEEeC------CCCCCcccEEEEEE-CCEEEEEeCCCCCceEEcCeecC
Q 037445 7 KLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIK------DDGISSKHLIIESV-SGKWTIQDLDSCNGTFLNSTTLP 79 (349)
Q Consensus 7 ~L~Vi~Gp~~G~~~~L~~g~~~tIGR~~~~cDIvL~------DpsVSR~HA~I~~~-~g~~~L~DLgStNGTfVNG~rI~ 79 (349)
.+-|+.|... .+.+. +..+++||+..++.|-|+ ...|||.+|.|... +|.|+|.++|- --.||||.+|.
T Consensus 432 AiAvL~Gr~s--kh~mr-k~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlGK-~~I~vng~~l~ 507 (547)
T KOG2293|consen 432 AIAVLYGRFS--KHYMR-KKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLGK-RSILVNGGELD 507 (547)
T ss_pred eeEEEechhh--Hhhhc-CcceEeeccCCCcceeeeccccCccceeeccceeEEeccCCcEEeccCcc-eeEEeCCcccc
Confidence 3556666533 34455 678999999777655543 24999999999984 67899999964 56999999999
Q ss_pred CCCcEEecCCCEEEECCcceEEE
Q 037445 80 PNTPFDLRENDTIKLGDCTTISV 102 (349)
Q Consensus 80 ~~~~v~L~~GD~I~LG~st~~~v 102 (349)
+|..+.|.+.-+|+|-+-.|.|.
T Consensus 508 ~gq~~~L~~nclveIrg~~FiF~ 530 (547)
T KOG2293|consen 508 RGQKVILKNNCLVEIRGLRFIFE 530 (547)
T ss_pred CCceEEeccCcEEEEccceEEEe
Confidence 99999999999999988755543
No 15
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=96.15 E-value=0.012 Score=65.47 Aligned_cols=88 Identities=18% Similarity=0.292 Sum_probs=70.6
Q ss_pred EEEEEe--CCCCCeEEEecCCCeEEEcCCCCCC--CEEeCCCCCCcccEEEEEECCEEEEEeCCCCCceEEcCeecCCCC
Q 037445 7 KLIMVR--GPRSGETIEFKPGSKIRIGRIVRGN--DVTIKDDGISSKHLIIESVSGKWTIQDLDSCNGTFLNSTTLPPNT 82 (349)
Q Consensus 7 ~L~Vi~--Gp~~G~~~~L~~g~~~tIGR~~~~c--DIvL~DpsVSR~HA~I~~~~g~~~L~DLgStNGTfVNG~rI~~~~ 82 (349)
.|+++. |......+.|.. ...-+|.. ..+ .|.|..|.|-.+||.|..-+|-+.|+-+.-..-|||||.+|..
T Consensus 358 vLve~s~dG~~s~~ri~L~~-~vtEVGs~-~~~~~~iqLfGP~IqprHc~it~meGVvTvTP~~~DA~t~VnGh~isq-- 433 (1629)
T KOG1892|consen 358 VLVELSPDGSDSRKRIRLQL-SVTEVGSE-KLDDNSIQLFGPGIQPRHCDITNMEGVVTVTPRSMDAETYVNGHRISQ-- 433 (1629)
T ss_pred EEEEEcCCCCCcceeEEecc-Cceecccc-ccCCcceeeeCCCCCccccchhhccceEEecccccchhhhccceecch--
Confidence 344444 334446788874 56779987 444 7899999999999999999999999987555569999999985
Q ss_pred cEEecCCCEEEECCcc
Q 037445 83 PFDLRENDTIKLGDCT 98 (349)
Q Consensus 83 ~v~L~~GD~I~LG~st 98 (349)
+..|++|+.|+||...
T Consensus 434 ttiL~~G~~v~fGa~h 449 (1629)
T KOG1892|consen 434 TTILQSGMKVQFGASH 449 (1629)
T ss_pred hhhhccCCEEEeccce
Confidence 8899999999999983
No 16
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.34 E-value=0.1 Score=55.18 Aligned_cols=77 Identities=16% Similarity=0.216 Sum_probs=62.2
Q ss_pred eEEEecCCCeEEEcCCCCCCCEEeCCCCCCcccEEEEEE--CCEEEEEeCCCCCceEEcCeecCCCCcEEecCCCEEEEC
Q 037445 18 ETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESV--SGKWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLG 95 (349)
Q Consensus 18 ~~~~L~~g~~~tIGR~~~~cDIvL~DpsVSR~HA~I~~~--~g~~~L~DLgStNGTfVNG~rI~~~~~v~L~~GD~I~LG 95 (349)
..+.|.. ....|||+ +.- .|.|..+||++..+..+ .+...+.-|| .|.+-|||+.+.++....|.+||.+.|=
T Consensus 25 ~~~~~~~-~~~~~gr~-pet--~i~d~~cs~~qv~l~a~~~~~~v~~k~lg-~np~~~~~~~~~~~~~~~l~~g~~l~~v 99 (526)
T TIGR01663 25 HFIHLDA-GALFLGRG-PET--GIRDRKCSKRQIELQADLEKATVALKQLG-VNPCGTGGLELKPGGEGELGHGDLLEIV 99 (526)
T ss_pred CeeccCC-CceEEccC-ccc--ccchhhhchhhheeeecccCceEEEEEcc-CCCcccCceEecCCCeeeecCCCEEEEe
Confidence 5677774 45779999 555 56699999999999875 4567778885 4999999999999999999999999886
Q ss_pred Ccce
Q 037445 96 DCTT 99 (349)
Q Consensus 96 ~st~ 99 (349)
....
T Consensus 100 ~~~~ 103 (526)
T TIGR01663 100 NGLH 103 (526)
T ss_pred cccc
Confidence 5533
No 17
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.62 E-value=0.21 Score=56.25 Aligned_cols=73 Identities=23% Similarity=0.354 Sum_probs=62.4
Q ss_pred CeEEEcCCCCCCCEEeCCCCCCcccEEEEEEC-CEEEEEeCCCCCceEEcCeecCCCCcEEecCCCEEEECCcceEEE
Q 037445 26 SKIRIGRIVRGNDVTIKDDGISSKHLIIESVS-GKWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCTTISV 102 (349)
Q Consensus 26 ~~~tIGR~~~~cDIvL~DpsVSR~HA~I~~~~-g~~~L~DLgStNGTfVNG~rI~~~~~v~L~~GD~I~LG~st~~~v 102 (349)
...+||-. .+-||++..-.|-+.||.|.+.. +..++..+-++ -+||||..+.. ..+|++||.|-.|...|..+
T Consensus 467 ~~tlig~~-~~~~i~l~glgi~p~h~vidI~~dg~l~~~p~~~~-R~~VNGs~v~~--~t~L~~GdRiLwGnnHFFrv 540 (1714)
T KOG0241|consen 467 DHTLIGLF-KSQDIQLSGLGIQPKHCVIDIESDGELRLTPLLNA-RSCVNGSLVCS--TTQLWHGDRILWGNNHFFRV 540 (1714)
T ss_pred Cceeeccc-cCcceeeecCcccCccceeeeccCCcEEecccccc-eeeecCceecc--ccccccCceEEecccceEEe
Confidence 45679988 88999999999999999999964 45888887554 89999998885 78999999999999987666
No 18
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=92.61 E-value=0.52 Score=48.44 Aligned_cols=85 Identities=13% Similarity=0.238 Sum_probs=66.5
Q ss_pred CcEEEEEEeCCCCCeEEEecCCCeEEEcCCCCCCCEEeCCCCCCcccEEEEEECCEEEEEeCCCCCceEEcCeecCCCCc
Q 037445 4 PGMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVSGKWTIQDLDSCNGTFLNSTTLPPNTP 83 (349)
Q Consensus 4 P~l~L~Vi~Gp~~G~~~~L~~g~~~tIGR~~~~cDIvL~DpsVSR~HA~I~~~~g~~~L~DLgStNGTfVNG~rI~~~~~ 83 (349)
..+.|+.++|+..|+++.|+.+ .+++|=. +|||.++=+. ..-+.+...+++.++.- +.--+||||.+-.. .
T Consensus 3 ~~~Klr~Lng~L~GrEl~Lp~G-~~tlG~~--gcDi~lpL~~--~~~~~L~i~e~gi~l~~--~~~~vwVnG~~~~~--~ 73 (395)
T PRK15367 3 SSWKIRFLGHVLQGREVWLNEG-NLSLGEK--GCDICIPLTI--NEKIILREQADSLFVDA--GKARVRVNGRRFNP--N 73 (395)
T ss_pred cceeeeecCCcccCcEEecCCC-ceeecCC--CceEEEECCC--CCEEEEEEcCCcEEEec--CCceEEECCEEcCC--C
Confidence 5689999999999999999965 5899996 7999986543 44455667788888853 22469999998875 4
Q ss_pred EEecCCCEEEECCc
Q 037445 84 FDLRENDTIKLGDC 97 (349)
Q Consensus 84 v~L~~GD~I~LG~s 97 (349)
.+|..+..|.+++.
T Consensus 74 ~~LPl~q~Ie~aG~ 87 (395)
T PRK15367 74 KPLPSSGVLQVAGV 87 (395)
T ss_pred CCCCCcchhhhcce
Confidence 45888889988876
No 19
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=74.93 E-value=14 Score=28.61 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=49.0
Q ss_pred eEEEecCCcceeeEEeeecC-CceEEeeccCCceeEEeeEEec--cccccCCCCcccceeeEEecC
Q 037445 205 KITKKGRGRSKDLQEMPLDG-GKVKIESEENLEPLEVLGVQVD--GKENFRPGKETSKKCQVQVDG 267 (349)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 267 (349)
.|+....+-+..-..|.++. +++++....+...+.|||..+. .+..+.+||. |.+..
T Consensus 34 ~i~l~~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~~~~~~~~~~~l~~gd~------i~ig~ 93 (102)
T cd00060 34 DIVLDDPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNGQRVSPGEPVRLRDGDV------IRLGN 93 (102)
T ss_pred CEEcCCCCeeCcceEEEEcCCCCEEEEECCCCCCeEECCEECCCCCcEECCCCCE------EEECC
Confidence 56666777788888999999 9999999999999999999999 8889999998 77763
No 20
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=71.66 E-value=11 Score=27.85 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=38.2
Q ss_pred eEEEecCCcceeeEEeeecCC-ceEEeeccCCceeEEeeEEecc--ccccCCCCc
Q 037445 205 KITKKGRGRSKDLQEMPLDGG-KVKIESEENLEPLEVLGVQVDG--KENFRPGKE 256 (349)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 256 (349)
.|......-+..-..|-++++ .|+|..-.+...+.|||..+.. ...|.+||.
T Consensus 10 di~l~~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~ 64 (68)
T PF00498_consen 10 DIVLPDPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDI 64 (68)
T ss_dssp SEEETSTTSSTTSEEEEEETTEEEEEEESSSSS-EEETTEEESSTSEEEE-TTEE
T ss_pred CEEECCHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCEEcCCCCEEECCCCCE
Confidence 344444444566677788888 9999998888888999999988 777888887
No 21
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=47.72 E-value=19 Score=31.30 Aligned_cols=47 Identities=32% Similarity=0.485 Sum_probs=29.1
Q ss_pred CcccCCCCceeeeeccccceeeccCccccceeeEEEecC-----CcceeeEEeeecCCc
Q 037445 173 NLQEMPPQSVEVQVESKENLELEEGGEIESESKITKKGR-----GRSKDLQEMPLDGGK 226 (349)
Q Consensus 173 ~~~~~~~~s~~~~~~~~e~~~~~eg~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 226 (349)
.+++|+++|++....+.+.+.... -.++.+|+ |+.+.+.|+++|+|+
T Consensus 3 ~i~~~~v~S~I~~P~~~~~v~~~~-------~~v~i~G~A~~g~g~~I~rVEVS~DgG~ 54 (131)
T PF03404_consen 3 PINEMPVNSVITSPSDGETVKAGD-------GTVTIRGYAWSGGGRGIARVEVSTDGGK 54 (131)
T ss_dssp B--B---EEEEEESBTTEEEESES-------EEEEEEEEEE-STT--EEEEEEESSTTS
T ss_pred chhhcCCCEEEEecCCCCEEccCC-------cEEEEEEEEEeCCCcceEEEEEEeCCCC
Confidence 467899999988766666665443 24555555 668999999999998
No 22
>smart00363 S4 S4 RNA-binding domain.
Probab=46.51 E-value=31 Score=23.47 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=20.3
Q ss_pred CceEEcCeec-CCCCcEEecCCCEEEECC
Q 037445 69 NGTFLNSTTL-PPNTPFDLRENDTIKLGD 96 (349)
Q Consensus 69 NGTfVNG~rI-~~~~~v~L~~GD~I~LG~ 96 (349)
...+|||+++ .+ ...|..||.|.+-.
T Consensus 26 g~i~vng~~~~~~--~~~l~~gd~i~~~~ 52 (60)
T smart00363 26 GRVKVNGKKVTKP--SYIVKPGDVISVRG 52 (60)
T ss_pred CCEEECCEEecCC--CeEeCCCCEEEEcc
Confidence 4689999988 43 57889999988754
No 23
>COG1984 DUR1 Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]
Probab=44.96 E-value=91 Score=31.52 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=43.0
Q ss_pred CCcccEEEEEECCEEEEEeCCCCCceEEcCeecCCCCcEEecCCCEEEECCc---ceEEEEEE
Q 037445 46 ISSKHLIIESVSGKWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDC---TTISVQMI 105 (349)
Q Consensus 46 VSR~HA~I~~~~g~~~L~DLgStNGTfVNG~rI~~~~~v~L~~GD~I~LG~s---t~~~v~f~ 105 (349)
|.--...|++..+.|+..- |..-...|||+.+.+...+.++.||+|+||.. .+.|+-+.
T Consensus 54 itl~g~t~~f~~~~~ialT-Gad~~a~ld~~~i~~~~~~~vk~Gq~L~~g~~~~G~R~YLav~ 115 (314)
T COG1984 54 ITLGGPTLEFTSDALIALT-GADCEATLDGQEVPPWSPYLVKAGQTLKLGRPKQGMRAYLAVA 115 (314)
T ss_pred EecCCeEEEEecCcEEEEe-CCcccceECCEEcCCCceEEccCCCEEEecCCCCcceEEEEec
Confidence 3444556667655544443 45566889999999999999999999999987 45566543
No 24
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=42.79 E-value=26 Score=25.92 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=19.6
Q ss_pred CceEEcCeecCCCCcEEecCCCEEEE
Q 037445 69 NGTFLNSTTLPPNTPFDLRENDTIKL 94 (349)
Q Consensus 69 NGTfVNG~rI~~~~~v~L~~GD~I~L 94 (349)
...+|||+.+.. ..+.|..||.|.|
T Consensus 34 G~V~VNg~~~~~-~~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGELENR-RGKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCEEccC-CCCCCCCCCEEEe
Confidence 458999998842 2578999999976
No 25
>smart00797 AHS2 Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).
Probab=42.40 E-value=1.1e+02 Score=30.07 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=31.4
Q ss_pred CCCCceEEcCeecCCCCcEEecCCCEEEECCc---ceEEEEEE
Q 037445 66 DSCNGTFLNSTTLPPNTPFDLRENDTIKLGDC---TTISVQMI 105 (349)
Q Consensus 66 gStNGTfVNG~rI~~~~~v~L~~GD~I~LG~s---t~~~v~f~ 105 (349)
|..-...|||+++.....+.++.||+|+||.. .+.|+-+.
T Consensus 52 GA~~~~~ln~~~~~~~~~~~v~~Gd~L~~g~~~~G~R~YLAv~ 94 (280)
T smart00797 52 GADFPATLDGQPVPPWKPFLVRAGQVLSLGAPKAGARAYLAVA 94 (280)
T ss_pred CCCCeeeECCEEcCCCeEEEECCCCEEEeCCCCCccEEEEEEe
Confidence 44456779999999888899999999999976 45566443
No 26
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=41.65 E-value=21 Score=24.95 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=18.1
Q ss_pred CceEEcCeecCCCCcEEecCCCEE
Q 037445 69 NGTFLNSTTLPPNTPFDLRENDTI 92 (349)
Q Consensus 69 NGTfVNG~rI~~~~~v~L~~GD~I 92 (349)
++.+|||+.+.. -.+.+..||+|
T Consensus 26 g~V~VNg~~v~~-~~~~v~~~d~I 48 (48)
T PF01479_consen 26 GRVKVNGKVVKD-PSYIVKPGDVI 48 (48)
T ss_dssp TTEEETTEEESS-TTSBESTTEEE
T ss_pred CEEEECCEEEcC-CCCCCCCcCCC
Confidence 569999999982 25788888876
No 27
>PF02626 AHS2: Allophanate hydrolase subunit 2; InterPro: IPR003778 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 2 of allophanate hydrolase (AHS2) which is found in urea carboxylase.; PDB: 3MML_G 3VA7_A 3OEP_A 3OPF_C 3ORE_B.
Probab=41.53 E-value=54 Score=32.08 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=29.0
Q ss_pred CCCCceEEcCeecCCCCcEEecCCCEEEECCc---ceEEEEE
Q 037445 66 DSCNGTFLNSTTLPPNTPFDLRENDTIKLGDC---TTISVQM 104 (349)
Q Consensus 66 gStNGTfVNG~rI~~~~~v~L~~GD~I~LG~s---t~~~v~f 104 (349)
|..-...|||+++...+.+.++.||+|+||.. .+.|+-+
T Consensus 52 Ga~~~~~lng~~~~~~~~~~v~~Gd~L~~~~~~~G~r~YLAv 93 (271)
T PF02626_consen 52 GADFEATLNGKPVPMWQPFLVKAGDVLKFGPPRSGARAYLAV 93 (271)
T ss_dssp ESCEEEEETTEEE-TTSEEEE-TT-EEEEEEESSECEEEEEE
T ss_pred CCCCceEECCEEccCCEEEEECCCCEEEecCCCCccEEEEEe
Confidence 44556889999999999999999999999976 4556544
No 28
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=39.15 E-value=44 Score=27.17 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=17.5
Q ss_pred eeEEEecCCcceeeEEeeecC
Q 037445 204 SKITKKGRGRSKDLQEMPLDG 224 (349)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~ 224 (349)
|.++++|||.+...+++...+
T Consensus 43 Fevte~GWGeF~i~I~i~f~~ 63 (84)
T PF03366_consen 43 FEVTETGWGEFEIPIKIHFKD 63 (84)
T ss_dssp EEEEEEESS--EEEEEEECCC
T ss_pred CEEEEeEeccEEEEEEEEEeC
Confidence 899999999999999998876
No 29
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=35.39 E-value=84 Score=32.70 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=48.2
Q ss_pred ceeeccCccccceeeEEEecCCcceeeEEeeecCCceE-Eeec-------cCCceeEEeeEEeccccccCCCCcccceee
Q 037445 191 NLELEEGGEIESESKITKKGRGRSKDLQEMPLDGGKVK-IESE-------ENLEPLEVLGVQVDGKENFRPGKETSKKCQ 262 (349)
Q Consensus 191 ~~~~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (349)
|+++-|| +.|.-..| |-+-+|+..+... +.-+ .++.++.|||...+..+.|--+..
T Consensus 18 El~Lp~G-------~~tlG~~g---cDi~lpL~~~~~~~L~i~e~gi~l~~~~~~vwVnG~~~~~~~~LPl~q~------ 81 (395)
T PRK15367 18 EVWLNEG-------NLSLGEKG---CDICIPLTINEKIILREQADSLFVDAGKARVRVNGRRFNPNKPLPSSGV------ 81 (395)
T ss_pred EEecCCC-------ceeecCCC---ceEEEECCCCCEEEEEEcCCcEEEecCCceEEECCEEcCCCCCCCCcch------
Confidence 4667777 34443334 6667777665543 2222 235799999999999999999999
Q ss_pred EEecCceeeeEEEEeee
Q 037445 263 VQVDGKEKTNVTLIAGA 279 (349)
Q Consensus 263 ~~~~~~~~~~~~~~~~~ 279 (349)
|+++| +.|.+|.
T Consensus 82 Ie~aG-----~~~vlG~ 93 (395)
T PRK15367 82 LQVAG-----VAIAFGK 93 (395)
T ss_pred hhhcc-----eEEEecC
Confidence 99999 8888875
No 30
>PRK11507 ribosome-associated protein; Provisional
Probab=34.35 E-value=65 Score=25.75 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=20.8
Q ss_pred ceeEEeeEEeccc-cccCCCCcccceeeEEecCc
Q 037445 236 EPLEVLGVQVDGK-ENFRPGKETSKKCQVQVDGK 268 (349)
Q Consensus 236 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 268 (349)
..|.|||+.-.-+ ..++|||. |+++|.
T Consensus 37 g~V~VNGeve~rRgkKl~~GD~------V~~~g~ 64 (70)
T PRK11507 37 GQVKVDGAVETRKRCKIVAGQT------VSFAGH 64 (70)
T ss_pred CceEECCEEecccCCCCCCCCE------EEECCE
Confidence 3688888876543 56899999 999993
No 31
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=33.31 E-value=30 Score=27.11 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=17.1
Q ss_pred CceEEcCeecCCCCcEEecCCCEEEECCcc
Q 037445 69 NGTFLNSTTLPPNTPFDLRENDTIKLGDCT 98 (349)
Q Consensus 69 NGTfVNG~rI~~~~~v~L~~GD~I~LG~st 98 (349)
+.++|||+...+ +...|.+||.|.|+...
T Consensus 33 g~V~VNGe~e~r-rg~Kl~~GD~V~~~~~~ 61 (65)
T PF13275_consen 33 GEVKVNGEVETR-RGKKLRPGDVVEIDGEE 61 (65)
T ss_dssp HHHEETTB-----SS----SSEEEEETTEE
T ss_pred CceEECCEEccc-cCCcCCCCCEEEECCEE
Confidence 458999996664 56889999999997753
No 32
>TIGR00724 urea_amlyse_rel biotin-dependent carboxylase uncharacterized domain. Urea amidolyase of Saccharomyces cerevisiae is a 1835 amino acid protein with an amidase domain, a biotin/lipoyl cofactor attachment domain, a carbamoyl-phosphate synthase L chain-like domain, and uncharacterized regions. It has both urea carboxylase and allophanate hydrolase activities. This alignment models a domain that represents uncharacterized prokaryotic proteins of about 300 amino acids, regions of prokaryotic urea carboxylase and of the urea carboxylase region of yeast urea amidolyase, and regions of other biotin-containing proteins.
Probab=33.25 E-value=1.7e+02 Score=29.41 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=31.1
Q ss_pred CCCCceEEcCeecCC-CCcEEecCCCEEEECCc---ceEEEEEE
Q 037445 66 DSCNGTFLNSTTLPP-NTPFDLRENDTIKLGDC---TTISVQMI 105 (349)
Q Consensus 66 gStNGTfVNG~rI~~-~~~v~L~~GD~I~LG~s---t~~~v~f~ 105 (349)
|..-...|||+++.. ...+.++.||+|.||.. .+.|+-+.
T Consensus 74 GA~~~~~lng~~~~~~~~~~~v~~Gd~L~~g~~~~G~R~YLAv~ 117 (314)
T TIGR00724 74 GADTDLCLNDGQVIPQWRPYEVKRGQILSLGRLKSGMRGYLAVR 117 (314)
T ss_pred CCCCcceeCCcccCCCceEEEECCCCEEEeCCCCCccEEEEEEe
Confidence 445578899999876 67799999999999976 45566554
No 33
>PRK01777 hypothetical protein; Validated
Probab=32.97 E-value=44 Score=27.85 Aligned_cols=31 Identities=23% Similarity=0.137 Sum_probs=23.9
Q ss_pred eCCCCCceEEcCeecCCCCcEEecCCCEEEECCc
Q 037445 64 DLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDC 97 (349)
Q Consensus 64 DLgStNGTfVNG~rI~~~~~v~L~~GD~I~LG~s 97 (349)
|+ +++-..|||+.+.. ...|++||.|.|=..
T Consensus 46 ~~-~~~~vgI~Gk~v~~--d~~L~dGDRVeIyrP 76 (95)
T PRK01777 46 DL-AKNKVGIYSRPAKL--TDVLRDGDRVEIYRP 76 (95)
T ss_pred cc-ccceEEEeCeECCC--CCcCCCCCEEEEecC
Confidence 44 45678899998875 679999999887543
No 34
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=32.23 E-value=55 Score=22.90 Aligned_cols=29 Identities=10% Similarity=0.308 Sum_probs=21.2
Q ss_pred CCceEEcCeecCCCCcEEecCCCEEEECCc
Q 037445 68 CNGTFLNSTTLPPNTPFDLRENDTIKLGDC 97 (349)
Q Consensus 68 tNGTfVNG~rI~~~~~v~L~~GD~I~LG~s 97 (349)
.++.+|||+.+.. ....+..||.|.+...
T Consensus 25 ~g~V~vn~~~~~~-~~~~v~~~d~i~i~~~ 53 (70)
T cd00165 25 HGHVLVNGKVVTK-PSYKVKPGDVIEVDGK 53 (70)
T ss_pred cCCEEECCEEccC-CccCcCCCCEEEEcCC
Confidence 3578999998832 2567888998888653
No 35
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=32.20 E-value=73 Score=25.74 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=26.6
Q ss_pred EEEEeCCCCCceEEcCeecCCCCcEEecCCCEEEECCc
Q 037445 60 WTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDC 97 (349)
Q Consensus 60 ~~L~DLgStNGTfVNG~rI~~~~~v~L~~GD~I~LG~s 97 (349)
|+|.| |.++|||+.-.+ +...|.+||.|.|.+.
T Consensus 32 ~~i~e----g~V~vNGe~EtR-RgkKlr~gd~V~i~~~ 64 (73)
T COG2501 32 AFIAE----GEVKVNGEVETR-RGKKLRDGDVVEIPGQ 64 (73)
T ss_pred HHHHC----CeEEECCeeeec-cCCEeecCCEEEECCE
Confidence 55554 579999997765 5688999999999986
No 36
>PRK11507 ribosome-associated protein; Provisional
Probab=31.09 E-value=69 Score=25.62 Aligned_cols=29 Identities=3% Similarity=0.083 Sum_probs=23.4
Q ss_pred CceEEcCeecCCCCcEEecCCCEEEECCcc
Q 037445 69 NGTFLNSTTLPPNTPFDLRENDTIKLGDCT 98 (349)
Q Consensus 69 NGTfVNG~rI~~~~~v~L~~GD~I~LG~st 98 (349)
+.+.|||+.-.+ +...|.+||+|.|.+..
T Consensus 37 g~V~VNGeve~r-RgkKl~~GD~V~~~g~~ 65 (70)
T PRK11507 37 GQVKVDGAVETR-KRCKIVAGQTVSFAGHS 65 (70)
T ss_pred CceEECCEEecc-cCCCCCCCCEEEECCEE
Confidence 569999996554 56889999999999863
No 37
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=29.70 E-value=1.3e+02 Score=30.88 Aligned_cols=54 Identities=7% Similarity=0.108 Sum_probs=41.1
Q ss_pred ceeeEEeeecCCceEEeeccCCceeEEe--eEEecc--ccccCCCCcccceeeEEecCceeeeEEEEeee
Q 037445 214 SKDLQEMPLDGGKVKIESEENLEPLEVL--GVQVDG--KENFRPGKETSKKCQVQVDGKEKTNVTLIAGA 279 (349)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (349)
+..-.+|-++++.|+|... +...+.|| |..|.. ...|++||+ |.+.. ++|.+..
T Consensus 46 S~~Ha~I~~~~g~~~l~Dl-StNGT~VN~sg~~l~~~~~~~L~~GD~------I~iG~-----~~lrv~~ 103 (396)
T TIGR03354 46 SGRHARIRYRDGAYLLTDL-STNGVFLNGSGSPLGRGNPVRLEQGDR------LRLGD-----YEIRVSL 103 (396)
T ss_pred chhhcEEEEECCEEEEEEC-CCCCeEECCCCCCCCCCCceEcCCCCE------EEECC-----EEEEEEe
Confidence 4444566778899999887 66678889 788775 467999999 99988 6666655
No 38
>PF10330 Stb3: Putative Sin3 binding protein; InterPro: IPR018818 This entry represents Sin3 binding proteins conserved in fungi. Sin3p does not bind DNA directly even though the yeast SIN3 gene functions as a transcriptional repressor. Sin3p is part of a large multiprotein complex []. Stb3 appears to bind directly to ribosomal RNA Processing Elements (RRPE) although there are no obvious domains which would accord with this, implying that Stb3 may be a novel RNA-binding protein [].
Probab=28.47 E-value=42 Score=28.28 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=17.7
Q ss_pred cCccccceeeEEEecCCcceeeE
Q 037445 196 EGGEIESESKITKKGRGRSKDLQ 218 (349)
Q Consensus 196 eg~~~~~~~~~~~~~~~~~~~~~ 218 (349)
|+|-.+-+..+.+-|||||-++.
T Consensus 54 E~gd~~~~VvFEKvGWGrW~ar~ 76 (92)
T PF10330_consen 54 EGGDKDGDVVFEKVGWGRWDARR 76 (92)
T ss_pred hcCCCCCCEEEEEeccceeeeee
Confidence 35556667888999999998764
No 39
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=28.26 E-value=58 Score=25.55 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=19.9
Q ss_pred ceEEcCeecCCCCcEEecCCCEEEECC
Q 037445 70 GTFLNSTTLPPNTPFDLRENDTIKLGD 96 (349)
Q Consensus 70 GTfVNG~rI~~~~~v~L~~GD~I~LG~ 96 (349)
-.+||++.+......+|++||.|.|=.
T Consensus 57 ~v~vN~~~v~~~~~~~l~dgdev~i~P 83 (88)
T TIGR01687 57 IILVNGRNVDWGLGTELKDGDVVAIFP 83 (88)
T ss_pred EEEECCEecCccCCCCCCCCCEEEEeC
Confidence 467888888754446899999987643
No 40
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=26.25 E-value=77 Score=30.07 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=28.3
Q ss_pred CCEEeCCC-CCCcccEEEEEECCEEEEEeCCCCCceEEcCeecC
Q 037445 37 NDVTIKDD-GISSKHLIIESVSGKWTIQDLDSCNGTFLNSTTLP 79 (349)
Q Consensus 37 cDIvL~Dp-sVSR~HA~I~~~~g~~~L~DLgStNGTfVNG~rI~ 79 (349)
|++.+.+. .|+..+..|...++.-+++|- .+-.||||++|.
T Consensus 1 C~V~~~~dv~i~~~~l~v~~~~~~~~~I~~--~g~L~i~G~~v~ 42 (229)
T PF11101_consen 1 CNVDLNYDVRINPQSLEVVQASGEKLRIDP--DGNLFINGKKVS 42 (229)
T ss_pred CCccCCCCeEEeCCEEEEEeCCCceEEEcC--CCcEEECCEEcc
Confidence 66666544 778888888887774455542 244999999876
No 41
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=25.14 E-value=75 Score=24.08 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=19.9
Q ss_pred CceEEcCeecCCCCcEEecCCCEEEECC
Q 037445 69 NGTFLNSTTLPPNTPFDLRENDTIKLGD 96 (349)
Q Consensus 69 NGTfVNG~rI~~~~~v~L~~GD~I~LG~ 96 (349)
.-.+|||+.+. ....|++||.|.|=.
T Consensus 50 ~~v~vNg~~v~--~~~~l~~gD~v~i~p 75 (80)
T cd00754 50 VRIAVNGEYVR--LDTPLKDGDEVAIIP 75 (80)
T ss_pred EEEEECCeEcC--CCcccCCCCEEEEeC
Confidence 34778888887 357899999998743
No 42
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=25.14 E-value=86 Score=26.74 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=21.1
Q ss_pred ceEEcCeecCCCCcEEecCCCEEEECCc
Q 037445 70 GTFLNSTTLPPNTPFDLRENDTIKLGDC 97 (349)
Q Consensus 70 GTfVNG~rI~~~~~v~L~~GD~I~LG~s 97 (349)
-+.|||++..+ ...+..||+|.|.-.
T Consensus 35 rV~vNG~~aKp--S~~VK~GD~l~i~~~ 60 (100)
T COG1188 35 RVKVNGQRAKP--SKEVKVGDILTIRFG 60 (100)
T ss_pred eEEECCEEccc--ccccCCCCEEEEEeC
Confidence 38899999987 678999998877654
No 43
>PRK06437 hypothetical protein; Provisional
Probab=23.82 E-value=1e+02 Score=23.68 Aligned_cols=23 Identities=9% Similarity=0.309 Sum_probs=17.6
Q ss_pred ceEEcCeecCCCCcEEecCCCEEEE
Q 037445 70 GTFLNSTTLPPNTPFDLRENDTIKL 94 (349)
Q Consensus 70 GTfVNG~rI~~~~~v~L~~GD~I~L 94 (349)
.+.+||..++ ....|++||.|.|
T Consensus 38 aV~vNg~iv~--~~~~L~dgD~Vei 60 (67)
T PRK06437 38 VVIVNGSPVL--EDHNVKKEDDVLI 60 (67)
T ss_pred EEEECCEECC--CceEcCCCCEEEE
Confidence 3557777776 3689999999876
No 44
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=23.06 E-value=88 Score=25.29 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=20.6
Q ss_pred ceEEcCeecCCCCcEEecCCCEEEECC
Q 037445 70 GTFLNSTTLPPNTPFDLRENDTIKLGD 96 (349)
Q Consensus 70 GTfVNG~rI~~~~~v~L~~GD~I~LG~ 96 (349)
-.+|||+.+.. .+.+++||.|.+=.
T Consensus 51 ~i~vNG~~v~~--~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 51 LILVNGRPVDF--DYRLKDGDRVAVYP 75 (81)
T ss_pred EEEECCEECCC--cccCCCCCEEEEEe
Confidence 37789999986 68999999998754
No 45
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=22.96 E-value=2.7e+02 Score=32.40 Aligned_cols=85 Identities=25% Similarity=0.321 Sum_probs=51.8
Q ss_pred CccCCcccCCCCceeeeeccccceeeccCccccceeeEE-----EecC-CcceeeEEe-------------eecCCceEE
Q 037445 169 GRNKNLQEMPPQSVEVQVESKENLELEEGGEIESESKIT-----KKGR-GRSKDLQEM-------------PLDGGKVKI 229 (349)
Q Consensus 169 ~rn~~~~~~~~~s~~~~~~~~e~~~~~eg~~~~~~~~~~-----~~~~-~~~~~~~~~-------------~~~~~~~~~ 229 (349)
+.++.+++..-+.|+=.++-.|+|.-.+. ++++|..-+ ++.- |++.+..|+ -+|+..+.|
T Consensus 360 yK~v~i~sI~t~gV~PT~dELekF~~~~e-~~Dl~~~st~~~~r~~~~~F~~GD~VeV~~Gel~glkG~ve~vdg~~vti 438 (1024)
T KOG1999|consen 360 YKDVSISSIITDGVKPTLDELEKFNPSNE-EGDLEWVSTLKSNRKKKHLFSPGDAVEVIVGELKGLKGKVESVDGTIVTI 438 (1024)
T ss_pred eeeeecceeeecCcccCHHHHHhhcCCCc-cccceeeeeeccccccccccCCCCeEEEeeeeeccceeEEEeccCceEEE
Confidence 34455554333333222333444444333 455554422 2333 777777664 578888888
Q ss_pred eec--cCCceeEEeeEEeccccccCCCCc
Q 037445 230 ESE--ENLEPLEVLGVQVDGKENFRPGKE 256 (349)
Q Consensus 230 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
.+. --..||+|+..-. .+-|+|||.
T Consensus 439 ~~~~e~l~~pl~~~~~eL--rKyF~~GDh 465 (1024)
T KOG1999|consen 439 MSKHEDLKGPLEVPASEL--RKYFEPGDH 465 (1024)
T ss_pred eeccccCCCccccchHhh--hhhccCCCe
Confidence 877 4578999998887 788999976
No 46
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=22.39 E-value=73 Score=26.19 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=20.8
Q ss_pred eEEcCeecC--CCCcEEecCCCEEEECCc
Q 037445 71 TFLNSTTLP--PNTPFDLRENDTIKLGDC 97 (349)
Q Consensus 71 TfVNG~rI~--~~~~v~L~~GD~I~LG~s 97 (349)
.+|||..+. .+..++|++||.|.|=++
T Consensus 62 VlvN~~di~~l~g~~t~L~dgD~v~i~P~ 90 (94)
T cd01764 62 VLINDTDWELLGEEDYILEDGDHVVFIST 90 (94)
T ss_pred EEECCccccccCCcccCCCCcCEEEEECC
Confidence 778998775 345689999999987543
No 47
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=22.35 E-value=73 Score=24.26 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=12.4
Q ss_pred EEcCeecCCCC-cEEecCCCEEEE
Q 037445 72 FLNSTTLPPNT-PFDLRENDTIKL 94 (349)
Q Consensus 72 fVNG~rI~~~~-~v~L~~GD~I~L 94 (349)
+|||+....+- .+.|++||.|.+
T Consensus 44 ~vNG~~~~~ga~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 44 YVNGESANVGAGSYKLKDGDKITW 67 (68)
T ss_dssp EETTEE-SS-CCC-B--TTEEEEE
T ss_pred EECCEEhhcCcceeEeCCCCEEEe
Confidence 45666555443 588999999976
No 48
>PRK10626 hypothetical protein; Provisional
Probab=21.90 E-value=97 Score=30.17 Aligned_cols=42 Identities=26% Similarity=0.254 Sum_probs=31.9
Q ss_pred CCCCEEeCCC-CCCcccEEEEEECCEEEEEeCCCCCceEEcCeecC
Q 037445 35 RGNDVTIKDD-GISSKHLIIESVSGKWTIQDLDSCNGTFLNSTTLP 79 (349)
Q Consensus 35 ~~cDIvL~Dp-sVSR~HA~I~~~~g~~~L~DLgStNGTfVNG~rI~ 79 (349)
..|++.+.+. .|+..+..|+-.++.+.| |. -|-.|+||++|.
T Consensus 22 ~qC~V~l~~DV~Itpq~v~V~~~sg~l~I-~~--dg~L~inGk~v~ 64 (239)
T PRK10626 22 YQCSVTPQDDVIISPQTVQVVGASGNLVI-SP--DGNVMRNGKQLS 64 (239)
T ss_pred cCCCCCCCCCeEEcCCeEEEEecCCceEE-cC--CCCEEECCEEec
Confidence 4688888655 889999999988777555 43 246999999875
No 49
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=21.11 E-value=82 Score=25.49 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.1
Q ss_pred ceeEEeeEEeccccccCCCCc
Q 037445 236 EPLEVLGVQVDGKENFRPGKE 256 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ 256 (349)
.-|.|||+.++=.+.+++||.
T Consensus 50 ~~i~vNG~~v~~~~~~~~Gd~ 70 (81)
T PF14451_consen 50 GLILVNGRPVDFDYRLKDGDR 70 (81)
T ss_pred EEEEECCEECCCcccCCCCCE
Confidence 458899999999999999998
No 50
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain. The EF-like superfamily contains the bacterial translation elongation factor P and its archeal and eukaryotic homologs, aIF5A and eIF5A. All proteins in this superfamily contain an S1 domain, which binds RNA or single-stranded DNA and often interacts with the ribosome. Hex-1, the SI-like domain of which is also found in this group, is structurally homologous to eIF5A and might have evolved from an ancestral eIF5A through gene duplication.
Probab=20.19 E-value=99 Score=22.40 Aligned_cols=44 Identities=27% Similarity=0.314 Sum_probs=35.8
Q ss_pred eEEeeecCCceEEeeccCCceeEEeeEEeccccccCCCCcccceeeEE
Q 037445 217 LQEMPLDGGKVKIESEENLEPLEVLGVQVDGKENFRPGKETSKKCQVQ 264 (349)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (349)
.+=++.||+.|..=..++.+.+.|.-..+++..-|+.|.+ |.|.
T Consensus 3 ~qylY~dg~~~~fMd~etyeq~~v~~~~~~~~~~l~eg~~----v~v~ 46 (55)
T cd04463 3 LQVLDIQGSKPVTMDLETYEVVQVPPPVDQSFESFEPGEV----VLVD 46 (55)
T ss_pred EEEEEcCCCEeEEecCCCceEEEeCHHHhhHHhhCCCCCE----EEEE
Confidence 4568889999999999999999998876777777888877 6654
No 51
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=20.09 E-value=1.1e+02 Score=26.03 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=26.0
Q ss_pred ceeEEeeEEeccccccCCCCcccceeeEEecCceeeeEEEEeeeeeccccccc
Q 037445 236 EPLEVLGVQVDGKENFRPGKETSKKCQVQVDGKEKTNVTLIAGARVTRSRMNA 288 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (349)
-.|.|||..++--+.+.+||. +++.|+-+..--+..+
T Consensus 34 GrV~vNG~~aKpS~~VK~GD~----------------l~i~~~~~~~~v~Vl~ 70 (100)
T COG1188 34 GRVKVNGQRAKPSKEVKVGDI----------------LTIRFGNKEFTVKVLA 70 (100)
T ss_pred CeEEECCEEcccccccCCCCE----------------EEEEeCCcEEEEEEEe
Confidence 357789999988888888888 6666665554444433
Done!