Your job contains 1 sequence.
>037446
MAANKIPIEINGDDDDEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQS
TLDKFFGNLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKT
ALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIP
QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG
NYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYV
HNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKF
RQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK
NEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMN
ALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIME
VDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKDDH
AITTPIFKEKLTAAETDLIAKYFHPTSDSTWRPSLIAFPHFQALPSRVHKVMHSFRTGML
IDMMQHLQGLTFSRDDRTFVEDEVSSDKHLGLQTVEPCETDERDNFHGTKKVTDSELSTR
TLGTQENHSMPQSCCKSPAAHAYLFGSDFISVDALGKVLIISVPALPFKELSHSKKKRAP
DTLLLNHWKQDSSPLKTSDKNYDELTVQSKAVEELTTSQAACIKDGALPISRFCRSDALP
EKPLDGFEEILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDDEYHNDLRDSELSPRLT
NLIKSGVVPESPINENGASNNKGRNPDLASPVKLCSIQPSKFASLGKTEKCSKYVRASQG
NVSISPVNKKIQTPLLKMNHTASAGGYSPTSPIAEETKTPLANLANSSCSRDWRLSSGDK
SENVEPARKFKRLRKVRDCEQNKNSENMKENAVAPVVNLARRFLGMSPIQNKHGRGRKKP
MDNMREYIEEEAEVSSEAEVSDDEEDDEDNNSYDDSFIDDRMNPTATSTQAESSGVDMMA
IYRFLLLSLSFSHAHMHPRVGEECI
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 037446
(1165 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1SI11 - symbol:FANCM "Uncharacterized protein"... 771 5.0e-104 6
UNIPROTKB|E2RNF7 - symbol:FANCM "Uncharacterized protein"... 792 5.1e-104 4
MGI|MGI:2442306 - symbol:Fancm "Fanconi anemia, complemen... 778 7.2e-104 5
UNIPROTKB|Q8IYD8 - symbol:FANCM "Fanconi anemia group M p... 778 8.2e-104 4
UNIPROTKB|J9P777 - symbol:FANCM "Uncharacterized protein"... 792 1.3e-103 4
UNIPROTKB|A4RN08 - symbol:MPH1 "ATP-dependent DNA helicas... 971 1.8e-101 2
ZFIN|ZDB-GENE-090929-1 - symbol:fancm "Fanconi anemia, co... 952 1.3e-97 2
POMBASE|SPAC9.05 - symbol:fml1 "ATP-dependent 3' to 5' DN... 940 1.8e-94 1
UNIPROTKB|B2RTQ9 - symbol:FANCM "FANCM protein" species:9... 514 1.0e-90 5
POMBASE|SPAC20H4.04 - symbol:fml2 "ATP-dependent 3' to 5'... 861 4.4e-90 2
UNIPROTKB|J9NY43 - symbol:FANCM "Uncharacterized protein"... 527 5.1e-90 5
UNIPROTKB|I3LAY7 - symbol:FANCM "Uncharacterized protein"... 519 5.5e-90 7
DICTYBASE|DDB_G0274841 - symbol:fncM "ATP-dependent DNA h... 823 4.3e-88 4
ASPGD|ASPL0000062874 - symbol:AN10063 species:162425 "Eme... 648 6.1e-84 3
FB|FBgn0038889 - symbol:CG7922 species:7227 "Drosophila m... 614 5.6e-75 4
CGD|CAL0005976 - symbol:MPH1 species:5476 "Candida albica... 601 3.1e-72 2
SGD|S000001441 - symbol:MPH1 "3'-5' DNA helicase involved... 597 3.2e-72 3
UNIPROTKB|F6QFS2 - symbol:F6QFS2 "Uncharacterized protein... 669 5.6e-65 1
UNIPROTKB|F1NE03 - symbol:Gga.50035 "Uncharacterized prot... 421 1.2e-58 4
DICTYBASE|DDB_G0294407 - symbol:helF "DEAD/DEAH box helic... 189 3.8e-16 2
TAIR|locus:2199081 - symbol:AT1G36020 "AT1G36020" species... 199 1.5e-14 1
RGD|1310093 - symbol:Dhx58 "DEXH (Asp-Glu-X-His) box poly... 215 1.1e-13 1
MGI|MGI:1931560 - symbol:Dhx58 "DEXH (Asp-Glu-X-His) box ... 141 1.2e-13 2
UNIPROTKB|K7GMB7 - symbol:DHX58 "Uncharacterized protein"... 139 4.8e-13 3
UNIPROTKB|F1S0P6 - symbol:DHX58 "Uncharacterized protein"... 139 8.7e-13 3
TAIR|locus:2149259 - symbol:DCL4 "dicer-like 4" species:3... 224 1.5e-12 2
UNIPROTKB|E2QXT4 - symbol:DHX58 "Uncharacterized protein"... 203 2.3e-12 1
MGI|MGI:2442858 - symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) bo... 133 6.5e-12 2
TAIR|locus:2097705 - symbol:DCL2 "dicer-like 2" species:3... 145 6.8e-12 3
UNIPROTKB|A2A376 - symbol:DDX58 "Probable ATP-dependent R... 133 9.0e-12 2
UNIPROTKB|Q5E9G8 - symbol:LGP2 "Putative uncharacterized ... 135 1.2e-11 2
UNIPROTKB|Q96C10 - symbol:DHX58 "Probable ATP-dependent R... 132 1.2e-11 2
UNIPROTKB|B3KWW1 - symbol:DDX58 "cDNA FLJ44001 fis, clone... 133 1.4e-11 2
UNIPROTKB|O95786 - symbol:DDX58 "Probable ATP-dependent R... 133 1.7e-11 2
UNIPROTKB|A4RHU9 - symbol:DCL2 "Dicer-like protein 2" spe... 134 3.7e-11 3
UNIPROTKB|F5H5W6 - symbol:DDX58 "Probable ATP-dependent R... 133 6.9e-11 2
DICTYBASE|DDB_G0280963 - symbol:rrpC "RNA-directed RNA po... 132 1.9e-10 3
UNIPROTKB|F1NDV4 - symbol:IFIH1 "Uncharacterized protein"... 149 2.0e-10 2
ZFIN|ZDB-GENE-081104-438 - symbol:ifih1 "interferon induc... 123 2.2e-10 3
UNIPROTKB|G3MWK8 - symbol:DHX58 "Uncharacterized protein"... 135 3.2e-10 2
ASPGD|ASPL0000041548 - symbol:dclB species:162425 "Emeric... 151 7.5e-10 3
UNIPROTKB|A7LFZ6 - symbol:DCL4 "Endoribonuclease Dicer ho... 138 1.7e-09 3
UNIPROTKB|E2RMV6 - symbol:DDX58 "Uncharacterized protein"... 120 1.7e-09 2
ZFIN|ZDB-GENE-120612-3 - symbol:dhx58 "DEXH (Asp-Glu-X-Hi... 170 8.4e-09 1
MGI|MGI:1918836 - symbol:Ifih1 "interferon induced with h... 142 9.8e-09 2
UNIPROTKB|I3LGW3 - symbol:DDX58 "Probable ATP-dependent R... 119 1.2e-08 2
UNIPROTKB|E2RNK0 - symbol:IFIH1 "Uncharacterized protein"... 135 1.4e-08 4
DICTYBASE|DDB_G0291249 - symbol:rrpB "RNA-directed RNA po... 203 1.8e-08 3
UNIPROTKB|Q9GLV6 - symbol:DDX58 "Probable ATP-dependent R... 114 3.9e-08 2
UNIPROTKB|Q9BYX4 - symbol:IFIH1 "Interferon-induced helic... 132 4.3e-08 2
RGD|1560496 - symbol:Ifih1 "interferon induced with helic... 138 5.3e-08 2
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 110 8.7e-08 2
UNIPROTKB|Q8LMR2 - symbol:DCL1 "Endoribonuclease Dicer ho... 115 9.4e-08 3
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 116 1.1e-07 2
UNIPROTKB|D4AC08 - symbol:Ifih1 "Protein Ifih1" species:1... 138 1.2e-07 2
UNIPROTKB|D4A8D9 - symbol:Ddx58 "Protein Ddx58" species:1... 109 1.7e-07 2
UNIPROTKB|F1MKU1 - symbol:DDX58 "Uncharacterized protein"... 113 2.1e-07 2
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 110 2.6e-07 2
DICTYBASE|DDB_G0289659 - symbol:rrpA "RNA-directed RNA po... 195 3.0e-07 4
DICTYBASE|DDB_G0270396 - symbol:ddx49 "DEAD/DEAH box heli... 108 3.1e-07 2
WB|WBGene00008400 - symbol:drh-3 species:6239 "Caenorhabd... 109 4.0e-07 2
ZFIN|ZDB-GENE-030131-3445 - symbol:dicer1 "Dicer1, Dcr-1 ... 119 4.4e-07 3
GENEDB_PFALCIPARUM|PFF1500c - symbol:PFF1500c "DEAD/DEAH ... 123 5.3e-07 2
UNIPROTKB|C6KTE4 - symbol:PFF1500c "DEAD/DEAH box ATP-dep... 123 5.3e-07 2
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 108 9.3e-07 2
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 108 9.3e-07 2
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 102 1.0e-06 2
RGD|1309460 - symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box po... 109 1.2e-06 3
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 108 1.5e-06 2
UNIPROTKB|I3L6Y9 - symbol:DICER1 "Uncharacterized protein... 124 1.7e-06 4
UNIPROTKB|F1NJX0 - symbol:DICER1 "Endoribonuclease Dicer"... 125 1.9e-06 4
UNIPROTKB|Q25BN1 - symbol:DICER1 "Endoribonuclease Dicer"... 125 1.9e-06 4
UNIPROTKB|F1NP11 - symbol:DICER1 "Endoribonuclease Dicer"... 125 2.0e-06 4
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 107 3.3e-06 2
WB|WBGene00001090 - symbol:drh-1 species:6239 "Caenorhabd... 110 3.6e-06 3
UNIPROTKB|Q6TUI4 - symbol:DICER1 "Endoribonuclease Dicer"... 124 3.8e-06 4
UNIPROTKB|E1BJZ0 - symbol:IFIH1 "Uncharacterized protein"... 122 3.9e-06 3
TAIR|locus:2032910 - symbol:RH36 "RNA helicase 36" specie... 124 4.0e-06 2
UNIPROTKB|F1MCQ5 - symbol:DICER1 "Endoribonuclease Dicer"... 123 4.8e-06 4
POMBASE|SPCC188.13c - symbol:dcr1 "dicer" species:4896 "S... 116 5.4e-06 3
CGD|CAL0004058 - symbol:DBP8 species:5476 "Candida albica... 141 5.7e-06 1
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN... 109 5.8e-06 2
UNIPROTKB|E9PU15 - symbol:Dicer1 "Protein Dicer1" species... 123 5.8e-06 4
UNIPROTKB|E2RIN4 - symbol:DICER1 "Uncharacterized protein... 122 6.1e-06 4
UNIPROTKB|Q9UPY3 - symbol:DICER1 "Endoribonuclease Dicer"... 121 7.6e-06 4
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 109 7.6e-06 2
UNIPROTKB|I3L840 - symbol:DDX18 "Uncharacterized protein"... 103 8.7e-06 2
UNIPROTKB|F1RY13 - symbol:DDX18 "Uncharacterized protein"... 103 8.8e-06 2
UNIPROTKB|I3L7B7 - symbol:DDX18 "Uncharacterized protein"... 103 9.6e-06 2
UNIPROTKB|Q9KU63 - symbol:VC_0660 "ATP-dependent RNA heli... 106 1.0e-05 2
TIGR_CMR|VC_0660 - symbol:VC_0660 "ATP-dependent RNA heli... 106 1.0e-05 2
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli... 112 1.2e-05 2
UNIPROTKB|F1N533 - symbol:DDX18 "Uncharacterized protein"... 103 1.8e-05 2
UNIPROTKB|F1MSX0 - symbol:F1MSX0 "Uncharacterized protein... 103 1.8e-05 2
UNIPROTKB|A0MQH0 - symbol:DICER1 "Endoribonuclease Dicer"... 123 1.8e-05 5
UNIPROTKB|E2RFA3 - symbol:DDX18 "Uncharacterized protein"... 100 1.8e-05 2
MGI|MGI:2177178 - symbol:Dicer1 "dicer 1, ribonuclease ty... 122 1.8e-05 5
FB|FBgn0034246 - symbol:Dcr-2 "Dicer-2" species:7227 "Dro... 115 2.1e-05 2
UNIPROTKB|Q81JK1 - symbol:BAS5307 "ATP-dependent RNA heli... 104 2.4e-05 2
TIGR_CMR|BA_5703 - symbol:BA_5703 "ATP-dependent RNA heli... 104 2.4e-05 2
WARNING: Descriptions of 26 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1SI11 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071821 "FANCM-MHF complex" evidence=IEA] [GO:0043240
"Fanconi anaemia nuclear complex" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0031297 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821
GO:GO:0043240 InterPro:IPR010994 SUPFAM:SSF47781 OMA:QMGMRSL
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:CU570961
Ensembl:ENSSSCT00000005515 Uniprot:F1SI11
Length = 2054
Score = 771 (276.5 bits), Expect = 5.0e-104, Sum P(6) = 5.0e-104
Identities = 154/344 (44%), Positives = 209/344 (60%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I +TALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 88 AGALWIYPTNCPVRDYQLNIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 147
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 148 FMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGSTQVFTRKEIWDSKRVLFLTPQVMVNDL 207
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAHRA GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 208 SRGACPAAEIKCLVIDEAHRALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 267
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E + V + +E I +++ + L
Sbjct: 268 ITNLLIEQIELRSEDAPDILPYSHERRVEKLVVPLSEELAAIQKAYIQILEAFAHSLIQR 327
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ ++ G +E F I+LYH LL G
Sbjct: 328 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGMQQGIIEGEFAICISLYHGYELLQQMG 387
Query: 398 IRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISH 437
+R Y L + K + A+ +S+NED K+ ++ +H
Sbjct: 388 MRSLYFFLCGIMDGTKGMTRAKNELSRNEDFMKLYNHLEYMFAH 431
Score = 304 (112.1 bits), Expect = 5.0e-104, Sum P(6) = 5.0e-104
Identities = 64/138 (46%), Positives = 87/138 (63%)
Query: 442 PKLSKMLEVLVDHFK------TKDPK--HSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
PKL K+ EV+V+HFK T D K +RV+IFS+FR SV++I L +++
Sbjct: 457 PKLKKLEEVVVEHFKSWNAQNTSDKKCDKTRVMIFSSFRDSVQEIAEMLLRHQPIIRVMT 516
Query: 494 FIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
F+ +++FR+GGYN +V+T +GEEGLDI EVDL+ICFDA SP
Sbjct: 517 FVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSP 576
Query: 554 LRMIQRMGRTGRKHDGRI 571
+R++QRMGRTGRK GRI
Sbjct: 577 IRLVQRMGRTGRKRQGRI 594
Score = 62 (26.9 bits), Expect = 5.0e-104, Sum P(6) = 5.0e-104
Identities = 28/113 (24%), Positives = 55/113 (48%)
Query: 844 LDGFEEILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDDEY-HNDLRDSELSPRLTNL 902
L F+E L+S E+D + E +++++ + D++ ++ D E+ R +
Sbjct: 1375 LQSFKETLNSTFDNSGFSIEKDKSKEQINLHQSRHSAEGDEQLTSSESEDDEIFQRKSKK 1434
Query: 903 IKSGVVPESPINENGASNNKGRNPDLASPVKLCSIQPSK--FASLGKTEKCSK 953
K V+ ESP N+ N++ +P A VK + P++ F+S ++E K
Sbjct: 1435 NKRNVL-ESPENQK---NSEVDSPLHA--VKKRRVPPNRLDFSSSDESENFHK 1481
Score = 60 (26.2 bits), Expect = 4.1e-103, Sum P(5) = 4.1e-103
Identities = 66/264 (25%), Positives = 109/264 (41%)
Query: 787 HWKQDSS-PL-KTSDKNYDELTVQ--SKAVEELTTSQAACIKDGALPISRFCRSDALPEK 842
H QD S PL + D ++++++ + + L S + + AL +S+F SD L
Sbjct: 1130 HSDQDESLPLFEDVDTEFNDVSLSPLNSKCKSLCVSDKTAVNEMAL-VSQFLISDELL-- 1186
Query: 843 PLDGFEEILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDDEYHNDLRDSELSPRLTNL 902
LD E D + + ED D V+E E L +DEY D S +L
Sbjct: 1187 -LDNNSEPQDQIIGDTVSWKHEDLRD----VHE--EKLK-NDEYGFDCSKYLFSVTF-DL 1237
Query: 903 IKSGVVPESPINENGASNNKGR-NPDLASPVKLCSIQPSKFASLGKTEKCSKYVRA-SQG 960
+ I E+ + NK + + DL P + I+ A+ + + S
Sbjct: 1238 GFCSPDSDDEILEHASDTNKNKVSDDL--PGRHLDIKEISDANCVSHQAAIPRDQVDSSM 1295
Query: 961 NVSIS-PVNKKIQTPLLKM-------NHTASAGGYSPTS-PIAEE-TKTPL--ANLANS- 1007
++S++ P ++ Q P L N ++ GYS S P+ E+ TPL +N NS
Sbjct: 1296 SISVTNPSSEDKQNPTLTCFPMSAAKNKKGTSPGYSQFSLPVGEKIVSTPLCKSNTRNSF 1355
Query: 1008 SCSRDWRLSSGDKSENVEPARKFK 1031
S R + D ++ + FK
Sbjct: 1356 SKKRIDMARNSDSNKGKVNLQSFK 1379
Score = 50 (22.7 bits), Expect = 5.0e-104, Sum P(6) = 5.0e-104
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 634 SLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQGLTFSRDDRTFVEDEVSS 686
SL + +Q P ++V HS R I++MQ ++G+ + ++ E E+ S
Sbjct: 741 SLCEWRLWQDHPLPTYQVNHSDRCHHFINIMQMIEGMRHEEGECSY-ELEIKS 792
Score = 47 (21.6 bits), Expect = 1.8e-102, Sum P(6) = 1.8e-102
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 904 KSGVVPESPINENGASNNKGRNPDLASPVKLCSIQPSKFASLGKTEKCSKYVRASQ 959
K P+S IN++ + + + A K I+P+K AS+ K K SK ++ Q
Sbjct: 815 KKSSFPKS-INQDRSFLMTESDEEFAEIFKQTHIKPTKIASVKK--KASKELKKGQ 867
Score = 43 (20.2 bits), Expect = 2.4e-101, Sum P(5) = 2.4e-101
Identities = 46/217 (21%), Positives = 88/217 (40%)
Query: 838 ALPEKPLDGFEEILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDDEYHNDLRDSELSP 897
AL + L E +LD+ ++Q+ + + + D+ ++ E +DEY D S
Sbjct: 1174 ALVSQFLISDELLLDNNSEPQDQIIGDTVSWKHEDLRDVHEEKLKNDEYGFDCSKYLFSV 1233
Query: 898 RLTNLIKSGVVPESPINENGASNNKGR-NPDLASPVKLCSIQPSKFASLGKTEKCSKYVR 956
+L + I E+ + NK + + DL P + I+ A+ + +
Sbjct: 1234 TF-DLGFCSPDSDDEILEHASDTNKNKVSDDL--PGRHLDIKEISDANCVSHQAAIPRDQ 1290
Query: 957 A-SQGNVSIS-PVNKKIQTPLLKMNHTASAGGYSPTSPIAEETKTPLANLANSS--CSRD 1012
S ++S++ P ++ Q P L ++A TSP + P+ S+ C +
Sbjct: 1291 VDSSMSISVTNPSSEDKQNPTLTCFPMSAAKNKKGTSPGYSQFSLPVGEKIVSTPLCKSN 1350
Query: 1013 WRLSSGDKSENVEPARKFKRLRKVRDCEQNKNSENMK 1049
R +S K KR+ R+ + NK N++
Sbjct: 1351 TR-NSFSK----------KRIDMARNSDSNKGKVNLQ 1376
Score = 42 (19.8 bits), Expect = 5.0e-104, Sum P(6) = 5.0e-104
Identities = 14/64 (21%), Positives = 31/64 (48%)
Query: 987 YSPTSPIAEETKTPLANLANSSCSRDWRLSSGDKSENVEPARKFKRLRKVRDCEQNKNSE 1046
Y S +E ++ + ++ C D+ L S D + K +R K+++ ++ +NS
Sbjct: 1606 YLEDSFCVDEEESCKSQSSDEVCV-DFNLISEDSFASGSKKYKTRRAVKLKEMKKRQNSV 1664
Query: 1047 NMKE 1050
+ K+
Sbjct: 1665 HSKK 1668
Score = 41 (19.5 bits), Expect = 5.0e-104, Sum P(6) = 5.0e-104
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 558 QRMGRTGRKHDG-RIPHIFKPEVQFVELSIEQ 588
Q R R D I I P+VQF+ L E+
Sbjct: 695 QLWSRRYRLRDSDEIKEIVLPQVQFLSLQSEE 726
Score = 39 (18.8 bits), Expect = 1.2e-101, Sum P(6) = 1.2e-101
Identities = 28/112 (25%), Positives = 48/112 (42%)
Query: 863 EEDTTDETLDVNEIKEPLSPD-DEYHNDLRDSELSPRLTNLIKSGVVPESPINENGASNN 921
E++ T + I EP D D H D+++ L I +G P+ + E
Sbjct: 1064 EKNCLSGTTNDTIIDEPNYCDYDIVHKDIKNENLVSNNHIQINTGP-PKCFVEE------ 1116
Query: 922 KGRNPDLASPVKLCSIQPSKFASLGKTEKCSKYVRASQGNVSISPVNKKIQT 973
++PD+A+ L + + SL E V +VS+SP+N K ++
Sbjct: 1117 --KHPDIAN-YGLPVLHSDQDESLPLFED----VDTEFNDVSLSPLNSKCKS 1161
>UNIPROTKB|E2RNF7 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071821 "FANCM-MHF complex" evidence=IEA]
[GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA]
[GO:0031297 "replication fork processing" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0031297 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821
GO:GO:0043240 InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697
KO:K10896 Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530
EMBL:AAEX03005706 RefSeq:XP_537429.2 Ensembl:ENSCAFT00000022327
GeneID:480307 KEGG:cfa:480307 Uniprot:E2RNF7
Length = 2047
Score = 792 (283.9 bits), Expect = 5.1e-104, Sum P(4) = 5.1e-104
Identities = 171/407 (42%), Positives = 234/407 (57%)
Query: 29 TACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLGPKPQGTEEFNEGSSFD-E 87
T Q+ S S S CS ++P + ST F +P+ ++ + ++ E
Sbjct: 7 TLFQTWGSSISRSAGAPGCSSGPERPQSPGTSTAH-FPPAAEAQPESDDDVLLVAVYEAE 65
Query: 88 SLCHVQ---IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI 144
V+ A WIYP N PVRDYQ IT+T+LF NTLV LPTGLGKT IAAVV+
Sbjct: 66 QQLRVENGGFCTSAGSLWIYPTNCPVRDYQLQITRTSLFCNTLVCLPTGLGKTFIAAVVM 125
Query: 145 YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204
YNF+RWFP GK+VF AP++PLV QQIEAC+ ++GIPQ +MTG R W++KR
Sbjct: 126 YNFYRWFPSGKVVFMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGTTQAFTRKEIWRSKR 185
Query: 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264
V F+TPQV+ D+ G C + CLVIDEAH+A GNYAYC +REL RILAL+
Sbjct: 186 VLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELFKYTNHFRILALS 245
Query: 265 ATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
ATPGS + IQ +I NL I +E R+E D+ Y H R++E + V +G+E I
Sbjct: 246 ATPGSDIKAIQQVITNLRIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELAAIQKAYI 305
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI 384
+V+ + S L +L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I
Sbjct: 306 QVLEAFASSLIQRNILMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICI 365
Query: 385 TLYHIRRLLSSHGIRPAYEML---EEKLKQGSFARF-MSKNEDIRKV 427
+LYH LL G+R Y L + K + A+ +S+NED K+
Sbjct: 366 SLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRAKNELSRNEDFMKL 412
Score = 296 (109.3 bits), Expect = 5.1e-104, Sum P(4) = 5.1e-104
Identities = 62/138 (44%), Positives = 87/138 (63%)
Query: 442 PKLSKMLEVLVDHFK------TKDPK--HSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
PKL K+ EV+++HFK T + K +RV+IFS+FR SV++I L +++
Sbjct: 448 PKLKKLEEVVLEHFKSWNIQNTSEKKCDETRVMIFSSFRDSVQEIAEMLLQHQPVIRVMT 507
Query: 494 FIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
F+ +++FR+GGYN +V+T +GEEGLDI EVDL+ICFDA SP
Sbjct: 508 FVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSP 567
Query: 554 LRMIQRMGRTGRKHDGRI 571
+R++QRMGRTGRK GRI
Sbjct: 568 IRLVQRMGRTGRKRKGRI 585
Score = 49 (22.3 bits), Expect = 5.1e-104, Sum P(4) = 5.1e-104
Identities = 17/75 (22%), Positives = 32/75 (42%)
Query: 844 LDGFEEILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDDEYHNDLRDSELSPRLTNLI 903
L F+E L+S + E+ + E ++ + P + N+ D E+ R
Sbjct: 1370 LQSFKETLNSTFVDSGLHVEKAKSREEINFLQSYHPAKDEQLTSNESEDEEICHRKIKKT 1429
Query: 904 KSGVVPESPINENGA 918
K V+ ESP ++ +
Sbjct: 1430 KGNVL-ESPEDQKNS 1443
Score = 49 (22.3 bits), Expect = 5.1e-104, Sum P(4) = 5.1e-104
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 624 HPTSDSTWRPSLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQGLTFSRDDRTFVEDE 683
H S S WR +Q P ++V HS R I +MQ ++G+ + ++ E E
Sbjct: 728 HQLSLSEWRV-------WQDHPFPTYQVDHSDRCHHFISIMQMIEGMRHEEGECSY-ELE 779
Query: 684 VSSDKHLGLQTVEPCETDERDNFH 707
+ S +L ++ V + R+ ++
Sbjct: 780 LKS--YLKMEDVSSTFSAPRNEYN 801
Score = 48 (22.0 bits), Expect = 1.7e-103, Sum P(4) = 1.7e-103
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 650 KVMHSFRTGMLIDMMQHLQGLTFSR 674
++++S LID +QHLQ + F R
Sbjct: 1869 EMLNSINKNKLIDQIQHLQSM-FER 1892
Score = 46 (21.3 bits), Expect = 1.0e-103, Sum P(4) = 1.0e-103
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 934 LCSIQPSKFASLGKTEK-----CSKYVRASQGNVSISPVNKK---IQTPL 975
L S P+K L E C + ++ ++GNV SP ++K + +PL
Sbjct: 1400 LQSYHPAKDEQLTSNESEDEEICHRKIKKTKGNVLESPEDQKNSEVDSPL 1449
Score = 45 (20.9 bits), Expect = 1.3e-103, Sum P(4) = 1.3e-103
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 625 PTSDSTWRPSLIAFPHFQA 643
P+S+ W PS FP A
Sbjct: 1297 PSSEDKWSPSFAHFPQSAA 1315
Score = 45 (20.9 bits), Expect = 1.9e-102, Sum P(3) = 1.9e-102
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 871 LDVNEIKEPLS-PDDEYHNDLRDSELSPRLTNLIKSGVVPESPINENGASNNKGRNPDLA 929
L + ++ S P +EY N L + T+ KS + IN+ + + + A
Sbjct: 784 LKMEDVSSTFSAPRNEY-NPLANGTF----TSNKKSSFLGN--INQGSSFLMTESDEECA 836
Query: 930 SPVKLCSIQPSKFASLGKTEKCSKYVRASQ 959
K ++P+K ASL K K SK ++ Q
Sbjct: 837 EIFKQTHVKPAKIASLKK--KASKELKKDQ 864
Score = 42 (19.8 bits), Expect = 2.8e-103, Sum P(4) = 2.8e-103
Identities = 34/157 (21%), Positives = 61/157 (38%)
Query: 892 DSELSPRLTNLIKSGVVPESPINENGASNNKGRNPD--LASPVKLCSIQPSKFASLGKTE 949
++ELS + + S ES NE +S N + L+ + ++ SL
Sbjct: 1514 EAELSQQEAEYVSSDENDESE-NEQDSSLLDFLNDETQLSQAINDSEMRAIYMKSLHSPL 1572
Query: 950 KCSKY--VRASQGNVSI-SPVNKKIQTPLLKMNHTASAGGYSPTSPIAEETKTPLANLAN 1006
++Y V N++I S + ++ +T L Y S +EE N+
Sbjct: 1573 MSNRYKMVHKKHTNINIFSQIPEQDETYLEDSFCVDEDESYKSQS--SEEEVCVDFNIIT 1630
Query: 1007 SSCSRDWRLSSGDKSENVEPARKFKRLRKVRDCEQNK 1043
C +SG K A K K++ ++C ++K
Sbjct: 1631 EDC-----FASGSKKYKTRRAVKLKQMEMRQNCARSK 1662
Score = 39 (18.8 bits), Expect = 7.2e-76, Sum P(3) = 7.2e-76
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 660 LIDMMQHLQGLTFSRDDRTFVEDEVSSDKHLGLQTVEPCET 700
L +M +G+T ++++ + ED + HL C T
Sbjct: 386 LCGIMDGTKGMTRAKNELSRNEDFMKLYNHLACMFAHTCGT 426
Score = 38 (18.4 bits), Expect = 7.2e-103, Sum P(4) = 7.2e-103
Identities = 16/84 (19%), Positives = 33/84 (39%)
Query: 938 QPSKFASLGKTEKCSKYVRASQGN-VSISPVNKKIQTPLLKMNHTASAGGYSPTSPIAEE 996
Q S F E+C++ + + I+ + KK L K + + + + +
Sbjct: 822 QGSSFLMTESDEECAEIFKQTHVKPAKIASLKKKASKEL-KKDQPMKENNDTVMNSLDTD 880
Query: 997 TKTPLANLANSSCSRDWRLSSGDK 1020
T + N++ D R S+ D+
Sbjct: 881 GSTTVENISQVDRLNDKRASNTDE 904
Score = 37 (18.1 bits), Expect = 9.2e-103, Sum P(4) = 9.2e-103
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 675 DDRTFVEDEVSSDKHLGLQTVEPCETD 701
D + + DE+ D++ LQ C+T+
Sbjct: 1171 DSQFLISDELLLDRNPQLQDQIICDTN 1197
>MGI|MGI:2442306 [details] [associations]
symbol:Fancm "Fanconi anemia, complementation group M"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=ISO] [GO:0043240 "Fanconi anaemia nuclear complex"
evidence=ISO] [GO:0071821 "FANCM-MHF complex" evidence=ISO]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 MGI:MGI:2442306
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 GO:GO:0003682
GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004518 GO:GO:0031297
GO:GO:0008026 GO:GO:0000712 GO:GO:0071821 GO:GO:0043240
InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697 eggNOG:COG1948
HOGENOM:HOG000112498 HOVERGEN:HBG081520 KO:K10896 OMA:QMGMRSL
OrthoDB:EOG4C5CHK Gene3D:3.40.50.10130 EMBL:AK050306 EMBL:AK053715
EMBL:AK084697 EMBL:AK086395 EMBL:AK173211 IPI:IPI00471330
IPI:IPI00654953 IPI:IPI00654989 IPI:IPI00655127 RefSeq:NP_849243.2
UniGene:Mm.374847 ProteinModelPortal:Q8BGE5 SMR:Q8BGE5
STRING:Q8BGE5 PhosphoSite:Q8BGE5 PRIDE:Q8BGE5
Ensembl:ENSMUST00000058889 GeneID:104806 KEGG:mmu:104806
UCSC:uc007nrc.1 UCSC:uc007nrd.1 UCSC:uc007nrf.1 UCSC:uc011ymf.1
GeneTree:ENSGT00640000091530 InParanoid:Q8BGE5 NextBio:357300
Bgee:Q8BGE5 CleanEx:MM_FANCM Genevestigator:Q8BGE5
GermOnline:ENSMUSG00000055884 Uniprot:Q8BGE5
Length = 2021
Score = 778 (278.9 bits), Expect = 7.2e-104, Sum P(5) = 7.2e-104
Identities = 154/350 (44%), Positives = 215/350 (61%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK 155
A A WIYP N PVRDYQ I+++ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK
Sbjct: 65 AAAGALWIYPTNCPVRDYQLDISRSALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK 124
Query: 156 IVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEK 215
+VF AP++PLV QQ+EAC +++GIPQ +MTG R W ++RV F+TPQV+
Sbjct: 125 VVFMAPTKPLVTQQMEACFHVMGIPQSHMAEMTGSTQAVNRKEIWSSRRVLFLTPQVMVN 184
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
D+ G ++ CLV+DEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q
Sbjct: 185 DLTRGAVPATHVKCLVVDEAHKALGNYAYCQVVRELVKYTTHFRILALSATPGSDIKAVQ 244
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335
+I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 245 QVITNLLIGKIELRSEESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLI 304
Query: 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL
Sbjct: 305 HRNVLMKRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFALCISLYHGYELLQQ 364
Query: 396 HGIRPAYEMLE---EKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS 441
G+R Y L + K + AR +S+NED K+ +Q + + + S
Sbjct: 365 MGMRSLYFFLSGIMDGTKGMTRARNELSRNEDFMKLYTHLQSAFAPASTS 414
Score = 297 (109.6 bits), Expect = 7.2e-104, Sum P(5) = 7.2e-104
Identities = 64/138 (46%), Positives = 85/138 (61%)
Query: 442 PKLSKMLEVLVDHFKTKDPK-------H-SRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
PKL K+ EV+++HFK+ + K H SRV+IFS+FR SV +I L +++
Sbjct: 433 PKLKKLEEVILEHFKSWNAKATTEKKCHESRVMIFSSFRDSVEEIAEMLLQHRPVIRVMT 492
Query: 494 FIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
F+ + +FR GGYN +V+T +GEEGLDI EVDL+ICFDA SP
Sbjct: 493 FVGHASGKNTKGFTQKEQLQVVRQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSP 552
Query: 554 LRMIQRMGRTGRKHDGRI 571
+R+IQRMGRTGRK GRI
Sbjct: 553 IRLIQRMGRTGRKRQGRI 570
Score = 57 (25.1 bits), Expect = 7.2e-104, Sum P(5) = 7.2e-104
Identities = 21/77 (27%), Positives = 31/77 (40%)
Query: 988 SPTSPIAEETKTPLANLANSSCSRDWRLSSGDKSENVEPARKFKRLRKVRDCEQNKNSEN 1047
SP E +P+ + R SS D+SEN R RL + +N +
Sbjct: 1400 SPEDQKNNEVDSPIHAVKKPRVLRSELASSDDESENF--GRTCPRLEHFKGRNRNIRKGS 1457
Query: 1048 MKENAVAPVVNLARRFL 1064
+ + V +ARRFL
Sbjct: 1458 AAQKNRSQVKTMARRFL 1474
Score = 50 (22.7 bits), Expect = 7.2e-104, Sum P(5) = 7.2e-104
Identities = 52/200 (26%), Positives = 78/200 (39%)
Query: 792 SSPLKTSDKNYDELTVQSKAVEELTTSQAACIKDGALPISRF-C--RSDALPEKPLDGFE 848
S PL+ S K LT + V S + D + P + C +S E DG E
Sbjct: 1142 SQPLRVSGKT---LTSEMPPVSHFLISDELLLDDDSEPEDQIVCGAKSWKCQEGVEDGQE 1198
Query: 849 EILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDDEYHNDLRDSELSPRLTNLIKSGVV 908
E+ + D T D+ + DDE D + ++ SG
Sbjct: 1199 ELRTDGQTFDCSV---DLFSVTFDLG-FRCSSGSDDEMLAGASDRTRTLGAADV--SGRH 1252
Query: 909 PESPINE-NGASNNKGRNPDLASPVKLCSIQPSKFASLGKTEKCSKYVRASQGNVSISPV 967
+ I + GAS GR SP+ + Q S +A E S +V +S SPV
Sbjct: 1253 SDKEIKDAGGASGPLGR---AISPIPTETAQWSPWAQ--NKEYASFHVASS------SPV 1301
Query: 968 NKKIQ-TPLLKMNHTASAGG 986
++++ TPL K +H +S G
Sbjct: 1302 KQRVRSTPLSK-SHASSKTG 1320
Score = 47 (21.6 bits), Expect = 7.2e-104, Sum P(5) = 7.2e-104
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 634 SLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQGL 670
SL + +Q P H+V HS R I +M+ ++G+
Sbjct: 712 SLSEWSLWQDRPLPTHQVDHSDRCHHFISIMKMIEGM 748
>UNIPROTKB|Q8IYD8 [details] [associations]
symbol:FANCM "Fanconi anemia group M protein" species:9606
"Homo sapiens" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0043240 "Fanconi anaemia nuclear complex"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071821 "FANCM-MHF
complex" evidence=IDA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IMP] [GO:0031297 "replication
fork processing" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00891
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 GO:GO:0003682
GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004518 GO:GO:0031297
Orphanet:84 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821 GO:GO:0043240
PDB:4DRB PDBsum:4DRB InterPro:IPR010994 SUPFAM:SSF47781
EMBL:DQ140356 EMBL:AK093422 EMBL:BC036056 EMBL:AB046816
IPI:IPI00176581 IPI:IPI00217755 RefSeq:NP_065988.1
UniGene:Hs.509229 PDB:4DAY PDBsum:4DAY ProteinModelPortal:Q8IYD8
SMR:Q8IYD8 IntAct:Q8IYD8 STRING:Q8IYD8 PhosphoSite:Q8IYD8
DMDM:78099254 PaxDb:Q8IYD8 PRIDE:Q8IYD8 DNASU:57697
Ensembl:ENST00000267430 Ensembl:ENST00000556036 GeneID:57697
KEGG:hsa:57697 UCSC:uc001wwc.2 UCSC:uc001wwd.4 CTD:57697
GeneCards:GC14P045605 HGNC:HGNC:23168 MIM:609644 MIM:614087
neXtProt:NX_Q8IYD8 PharmGKB:PA134943156 eggNOG:COG1948
HOGENOM:HOG000112498 HOVERGEN:HBG081520 InParanoid:Q8IYD8 KO:K10896
OMA:QMGMRSL OrthoDB:EOG4C5CHK GenomeRNAi:57697 NextBio:64551
ArrayExpress:Q8IYD8 Bgee:Q8IYD8 CleanEx:HS_FANCM
Genevestigator:Q8IYD8 GermOnline:ENSG00000187790
Gene3D:3.40.50.10130 Uniprot:Q8IYD8
Length = 2048
Score = 778 (278.9 bits), Expect = 8.2e-104, Sum P(4) = 8.2e-104
Identities = 152/325 (46%), Positives = 202/325 (62%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG + R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y H RK+E + V +G+E I +++ + L
Sbjct: 259 ITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEMLEEKLKQGSFARFMSKNE 422
+R Y L + G+ SKNE
Sbjct: 379 MRSLYFFLCG-IMDGTKGMTRSKNE 402
Score = 296 (109.3 bits), Expect = 8.2e-104, Sum P(4) = 8.2e-104
Identities = 61/138 (44%), Positives = 87/138 (63%)
Query: 442 PKLSKMLEVLVDHFK------TKDPKH--SRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
PKL K+ EV+++HFK T + K +RV+IFS+FR SV++I L+ +++
Sbjct: 448 PKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLSQHQPIIRVMT 507
Query: 494 FIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
F+ +++FR GGYN +V+T +GEEGLDI EVDL+ICFD+ SP
Sbjct: 508 FVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQKSP 567
Query: 554 LRMIQRMGRTGRKHDGRI 571
+R++QRMGRTGRK GRI
Sbjct: 568 IRLVQRMGRTGRKRQGRI 585
Score = 75 (31.5 bits), Expect = 8.2e-104, Sum P(4) = 8.2e-104
Identities = 38/171 (22%), Positives = 75/171 (43%)
Query: 790 QDSSPLKTSDKNYDELTVQSKAVEELTTSQAACIKDGALPISRFCRSDALPEKPLDGFEE 849
Q SS +K E T + +L+ S+ +D LP + SD + G +
Sbjct: 709 QFSSLQNEENKPAQESTT---GIHQLSLSEWRLWQDHPLPTHQVDHSDRC--RHFIGLMQ 763
Query: 850 ILDSPVLRRNQLREEDTTDETLDVNEIKEP-LSPDDEYHNDLRDSELSPRLTNLIKSGVV 908
+++ + E + L + ++ ++P +E +N D+ ++ + ++ IK+
Sbjct: 764 MIEGMRHEEGECSYELEVESYLQMEDVTSTFIAPRNESNNLASDTFITHKKSSFIKN--- 820
Query: 909 PESPINENGASNNKGRNPDLASPVKLCSIQPSKFASLGKTEKCSKYVRASQ 959
IN+ +S+ + + A VK I+P+K SL K K SK ++ Q
Sbjct: 821 ----INQGSSSSVIESDEECAEIVKQTHIKPTKIVSLKK--KVSKEIKKDQ 865
Score = 59 (25.8 bits), Expect = 6.3e-102, Sum P(4) = 6.3e-102
Identities = 27/95 (28%), Positives = 40/95 (42%)
Query: 645 PSRVHKVMHSFRTGMLIDMMQHLQGLTFSRDDRTFVEDEVSSDKHLGLQTVEPCETDERD 704
P +HK HS G L+ + S DD F +V K L + E + E D
Sbjct: 1396 PMYLHKSCHSVEDGQLLTSNE-------SEDDEIF-RRKVKRAKGNVLNSPEDQKNSEVD 1447
Query: 705 N-FHGTKK----VTDSELSTRTLGTQENHSMPQSC 734
+ H KK + SELS+ + E+ + P+ C
Sbjct: 1448 SPLHAVKKRRFPINRSELSS----SDESENFPKPC 1478
Score = 55 (24.4 bits), Expect = 1.0e-102, Sum P(6) = 1.0e-102
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 625 PTSDSTW---RPSLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQGLTFSRDDRTFVE 681
P +ST + SL + +Q P H+V HS R I +MQ ++G+ + ++ E
Sbjct: 720 PAQESTTGIHQLSLSEWRLWQDHPLPTHQVDHSDRCRHFIGLMQMIEGMRHEEGECSY-E 778
Query: 682 DEVSS 686
EV S
Sbjct: 779 LEVES 783
Score = 43 (20.2 bits), Expect = 8.2e-104, Sum P(4) = 8.2e-104
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 1015 LSSGDKSENVEPARKFKRLRKVRDCEQNKNSENMKENAVAPVVNLARRFL 1064
LSS D+SEN P + +L + C N + + ++AR+FL
Sbjct: 1465 LSSSDESENF-P-KPCSQLEDFKVCNGNARRGIKVPKRQSHLKHVARKFL 1512
Score = 43 (20.2 bits), Expect = 1.0e-102, Sum P(6) = 1.0e-102
Identities = 42/157 (26%), Positives = 67/157 (42%)
Query: 878 EPLSPDDEYHNDLRDSELSPRLTNLIKSGVVPESPI-NENGASNNKGRNPDLASPVKLCS 936
EP D + H ++ L P N ++ + SP N G +N+ N DL PV L +
Sbjct: 1077 EPSLCDCDVHKHNQNENLVPN--NRVQ---IHRSPAQNLVGENNHDVDNSDL--PV-LST 1128
Query: 937 IQPSKFASLGKTEKCSKYVRASQGNVSISPVNKKIQT-PL---LKMNHTASAGGYSPTSP 992
Q SL E V +VS+SP+N K ++ P+ ++ T + +
Sbjct: 1129 DQDE---SLLLFED----VNTEFDDVSLSPLNSKSESLPVSDKTAISETPLVSQFLISDE 1181
Query: 993 IAEETKTPLANL----ANSSCSRDWRLSSGDKSENVE 1025
+ + + L + ANS SRD R +K +N E
Sbjct: 1182 LLLDNNSELQDQITRDANSFKSRDQRGVQEEKVKNHE 1218
Score = 42 (19.8 bits), Expect = 1.0e-103, Sum P(4) = 1.0e-103
Identities = 22/103 (21%), Positives = 45/103 (43%)
Query: 955 VRASQGNVSISPVNKK---IQTPLLKMNHTASAGGYSPTSPIAEETKTPLANLANSSCSR 1011
V+ ++GNV SP ++K + +PL + S S E P CS+
Sbjct: 1427 VKRAKGNVLNSPEDQKNSEVDSPLHAVKKRRFPINRSELSSSDESENFP------KPCSQ 1480
Query: 1012 --DWRLSSGDKSENVEPARKFKRLRKVRDCEQNKNSENMKENA 1052
D+++ +G+ ++ ++ L+ V + +E +E+A
Sbjct: 1481 LEDFKVCNGNARRGIKVPKRQSHLKHVARKFLDDEAELSEEDA 1523
Score = 41 (19.5 bits), Expect = 6.3e-102, Sum P(4) = 6.3e-102
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 786 NHWKQDSSPLKTSDKNYD--ELTVQSK---AVEELTTSQAACIK 824
N + + P T D D + V K A+E+ +TS A+C K
Sbjct: 1754 NEVQSTTPPFTTVDSQKDCRKFPVPQKDGSALEDSSTSGASCSK 1797
Score = 39 (18.8 bits), Expect = 1.0e-99, Sum P(3) = 1.0e-99
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 650 KVMHSFRTGMLIDMMQHLQGLTFSR 674
++++S I+ +QHLQ + F R
Sbjct: 1870 EMLNSVNKNKFIEQIQHLQSM-FER 1893
Score = 38 (18.4 bits), Expect = 1.0e-102, Sum P(6) = 1.0e-102
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 847 FEEILDSPVLRRNQLREEDTTDETLDVNEIKEP 879
F+E D P +R +E T++ N IKEP
Sbjct: 890 FQE--DLPNDKRTSDTDEIAATCTINENVIKEP 920
>UNIPROTKB|J9P777 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 GO:GO:0005524
GO:GO:0003677 GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335
SUPFAM:SSF52980 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004518 GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
OMA:QMGMRSL Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530
EMBL:AAEX03005706 Ensembl:ENSCAFT00000046644 Uniprot:J9P777
Length = 2048
Score = 792 (283.9 bits), Expect = 1.3e-103, Sum P(4) = 1.3e-103
Identities = 171/407 (42%), Positives = 234/407 (57%)
Query: 29 TACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLGPKPQGTEEFNEGSSFD-E 87
T Q+ S S S CS ++P + ST F +P+ ++ + ++ E
Sbjct: 7 TLFQTWGSSISRSAGAPGCSSGPERPQSPGTSTAH-FPPAAEAQPESDDDVLLVAVYEAE 65
Query: 88 SLCHVQ---IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI 144
V+ A WIYP N PVRDYQ IT+T+LF NTLV LPTGLGKT IAAVV+
Sbjct: 66 QQLRVENGGFCTSAGSLWIYPTNCPVRDYQLQITRTSLFCNTLVCLPTGLGKTFIAAVVM 125
Query: 145 YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204
YNF+RWFP GK+VF AP++PLV QQIEAC+ ++GIPQ +MTG R W++KR
Sbjct: 126 YNFYRWFPSGKVVFMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGTTQAFTRKEIWRSKR 185
Query: 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264
V F+TPQV+ D+ G C + CLVIDEAH+A GNYAYC +REL RILAL+
Sbjct: 186 VLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELFKYTNHFRILALS 245
Query: 265 ATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
ATPGS + IQ +I NL I +E R+E D+ Y H R++E + V +G+E I
Sbjct: 246 ATPGSDIKAIQQVITNLRIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELAAIQKAYI 305
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI 384
+V+ + S L +L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I
Sbjct: 306 QVLEAFASSLIQRNILMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICI 365
Query: 385 TLYHIRRLLSSHGIRPAYEML---EEKLKQGSFARF-MSKNEDIRKV 427
+LYH LL G+R Y L + K + A+ +S+NED K+
Sbjct: 366 SLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRAKNELSRNEDFMKL 412
Score = 296 (109.3 bits), Expect = 1.3e-103, Sum P(4) = 1.3e-103
Identities = 62/138 (44%), Positives = 87/138 (63%)
Query: 442 PKLSKMLEVLVDHFK------TKDPK--HSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
PKL K+ EV+++HFK T + K +RV+IFS+FR SV++I L +++
Sbjct: 448 PKLKKLEEVVLEHFKSWNIQNTSEKKCDETRVMIFSSFRDSVQEIAEMLLQHQPVIRVMT 507
Query: 494 FIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
F+ +++FR+GGYN +V+T +GEEGLDI EVDL+ICFDA SP
Sbjct: 508 FVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSP 567
Query: 554 LRMIQRMGRTGRKHDGRI 571
+R++QRMGRTGRK GRI
Sbjct: 568 IRLVQRMGRTGRKRKGRI 585
Score = 49 (22.3 bits), Expect = 1.3e-103, Sum P(4) = 1.3e-103
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 624 HPTSDSTWRPSLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQGLTFSRDDRTFVEDE 683
H S S WR +Q P ++V HS R I +MQ ++G+ + ++ E E
Sbjct: 728 HQLSLSEWRV-------WQDHPFPTYQVDHSDRCHHFISIMQMIEGMRHEEGECSY-ELE 779
Query: 684 VSSDKHLGLQTVEPCETDERDNFH 707
+ S +L ++ V + R+ ++
Sbjct: 780 LKS--YLKMEDVSSTFSAPRNEYN 801
Score = 48 (22.0 bits), Expect = 1.7e-103, Sum P(4) = 1.7e-103
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 650 KVMHSFRTGMLIDMMQHLQGLTFSR 674
++++S LID +QHLQ + F R
Sbjct: 1870 EMLNSINKNKLIDQIQHLQSM-FER 1893
Score = 45 (20.9 bits), Expect = 1.3e-103, Sum P(4) = 1.3e-103
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 949 EKCSKYVRASQGNVSISPVNKK---IQTPL 975
E C + ++ ++GNV SP ++K + +PL
Sbjct: 1421 EICHRKIKKTKGNVLESPEDQKNSEVDSPL 1450
Score = 45 (20.9 bits), Expect = 1.7e-103, Sum P(4) = 1.7e-103
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 625 PTSDSTWRPSLIAFPHFQA 643
P+S+ W PS FP A
Sbjct: 1297 PSSEDKWSPSFAHFPQSAA 1315
Score = 45 (20.9 bits), Expect = 1.9e-102, Sum P(3) = 1.9e-102
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 871 LDVNEIKEPLS-PDDEYHNDLRDSELSPRLTNLIKSGVVPESPINENGASNNKGRNPDLA 929
L + ++ S P +EY N L + T+ KS + IN+ + + + A
Sbjct: 784 LKMEDVSSTFSAPRNEY-NPLANGTF----TSNKKSSFLGN--INQGSSFLMTESDEECA 836
Query: 930 SPVKLCSIQPSKFASLGKTEKCSKYVRASQ 959
K ++P+K ASL K K SK ++ Q
Sbjct: 837 EIFKQTHVKPAKIASLKK--KASKELKKDQ 864
Score = 42 (19.8 bits), Expect = 2.8e-103, Sum P(4) = 2.8e-103
Identities = 34/157 (21%), Positives = 61/157 (38%)
Query: 892 DSELSPRLTNLIKSGVVPESPINENGASNNKGRNPD--LASPVKLCSIQPSKFASLGKTE 949
++ELS + + S ES NE +S N + L+ + ++ SL
Sbjct: 1515 EAELSQQEAEYVSSDENDESE-NEQDSSLLDFLNDETQLSQAINDSEMRAIYMKSLHSPL 1573
Query: 950 KCSKY--VRASQGNVSI-SPVNKKIQTPLLKMNHTASAGGYSPTSPIAEETKTPLANLAN 1006
++Y V N++I S + ++ +T L Y S +EE N+
Sbjct: 1574 MSNRYKMVHKKHTNINIFSQIPEQDETYLEDSFCVDEDESYKSQS--SEEEVCVDFNIIT 1631
Query: 1007 SSCSRDWRLSSGDKSENVEPARKFKRLRKVRDCEQNK 1043
C +SG K A K K++ ++C ++K
Sbjct: 1632 EDC-----FASGSKKYKTRRAVKLKQMEMRQNCARSK 1663
Score = 39 (18.8 bits), Expect = 1.9e-75, Sum P(3) = 1.9e-75
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 660 LIDMMQHLQGLTFSRDDRTFVEDEVSSDKHLGLQTVEPCET 700
L +M +G+T ++++ + ED + HL C T
Sbjct: 386 LCGIMDGTKGMTRAKNELSRNEDFMKLYNHLACMFAHTCGT 426
Score = 38 (18.4 bits), Expect = 7.3e-103, Sum P(4) = 7.3e-103
Identities = 16/84 (19%), Positives = 33/84 (39%)
Query: 938 QPSKFASLGKTEKCSKYVRASQGN-VSISPVNKKIQTPLLKMNHTASAGGYSPTSPIAEE 996
Q S F E+C++ + + I+ + KK L K + + + + +
Sbjct: 822 QGSSFLMTESDEECAEIFKQTHVKPAKIASLKKKASKEL-KKDQPMKENNDTVMNSLDTD 880
Query: 997 TKTPLANLANSSCSRDWRLSSGDK 1020
T + N++ D R S+ D+
Sbjct: 881 GSTTVENISQVDRLNDKRASNTDE 904
Score = 37 (18.1 bits), Expect = 2.4e-102, Sum P(4) = 2.4e-102
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 675 DDRTFVEDEVSSDKHLGLQTVEPCETD 701
D + + DE+ D++ LQ C+T+
Sbjct: 1171 DSQFLISDELLLDRNPQLQDQIICDTN 1197
>UNIPROTKB|A4RN08 [details] [associations]
symbol:MPH1 "ATP-dependent DNA helicase MPH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0008026 eggNOG:COG1111
KO:K14635 OrthoDB:EOG4JHGPV RefSeq:XP_003713523.1
ProteinModelPortal:A4RN08 STRING:A4RN08 EnsemblFungi:MGG_04429T0
GeneID:2678216 KEGG:mgr:MGG_04429 Uniprot:A4RN08
Length = 1102
Score = 971 (346.9 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
Identities = 219/540 (40%), Positives = 318/540 (58%)
Query: 50 ANKKPSTCKQSTLDKFFGNLGPKPQGTEEFNEGSSFDESL-----CHVQIDAEAAKTWIY 104
A + T +Q+TL + P+P GT+ N F L H +D EA KTW+Y
Sbjct: 75 ARNQARTFQQTTLLGRIASQAPEPLGTQPRNS-RVFRADLPPEVPTHHALDPEALKTWVY 133
Query: 105 PVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163
P N+ P+RDYQF+I K LF+NTLVALPTGLGKT IAA VI NFFRW + ++VF AP++
Sbjct: 134 PTNLGPIRDYQFSIVKNGLFNNTLVALPTGLGKTFIAATVILNFFRWTRNAQMVFVAPTK 193
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL 223
PL QQ+EAC NI GIP+ + +TG+ P R + W+ KR+FF+TPQ L D+ G
Sbjct: 194 PLASQQVEACLNIAGIPRSQSTLLTGETKPVLREAEWEGKRLFFMTPQTLMNDLSKGYAD 253
Query: 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYI 283
K +V LV+DEAHRATG+YAY I + R+LALTATPGS + +Q +IDNL +
Sbjct: 254 PKRIVLLVVDEAHRATGDYAYVKVIEFIRRFSKSFRVLALTATPGSTVEGVQDVIDNLGV 313
Query: 284 STLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNR 343
S +E R E D+ +YVH+R+I+ + +E E + I+ + ++P S++S + R
Sbjct: 314 SHVEIRTEESIDIRNYVHSREIDRVVLEPSDEMLRISELFSQALKPLHSKISQQKIYIGR 373
Query: 344 DYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYFGALITLYHIRRLLSSHGIRPAY 402
D +++ LL +R + + P Q +K + A F L +L H +LL+ HGIRP Y
Sbjct: 374 DPMSITTFGLLKARQDWMKGPGRFANQGLKM-MLMAIFTILQSLAHAIKLLNYHGIRPFY 432
Query: 403 EML-------EEKLKQGS-FARFMSKNEDIRKVKLLMQQ--SISHGAQSPKLSKMLEVLV 452
+ L E+K ++GS + R + + +++ L + I A PKL+ + + L+
Sbjct: 433 DNLVAFRSETEDKGQKGSKYKRQLIGEQSFQEMMDLASKWLKIDGFAGHPKLTHLCDNLL 492
Query: 453 DHFKTK-DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIXXXXXXXXXXXXXXXX 511
++F + +RVI+FS +R S +I L ++ A+ F+
Sbjct: 493 NYFMDAGEGSSTRVIVFSEYRDSAEEITRVLNVHKPMISASLFVGQADSKKSEGMKQKQQ 552
Query: 512 XXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ KFR G +NV+VATSIGEEGLDI +VDL+IC+DA+ SP+RM+QRMGRTGRK G+I
Sbjct: 553 IETIAKFRDGIFNVLVATSIGEEGLDIGQVDLIICYDASSSPIRMLQRMGRTGRKRAGKI 612
Score = 55 (24.4 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 622 YFHPTSDSTWRPSLIAFPHFQ-ALPSRVHKVMH-SF--RTGMLIDMMQHLQGL 670
+FH ++ PSL A P Q L VH V H S+ R L + H QG+
Sbjct: 770 FFHQDTEEICMPSLTARPDLQRVLRPTVH-VKHGSYTKRCVRLFKKLSHSQGI 821
Score = 42 (19.8 bits), Expect = 4.1e-100, Sum P(2) = 4.1e-100
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 577 PEVQFVELSIEQYVSRGKKVKD---DHAITTPIFKEKLTAAETDLIAKYFHPT 626
P ++ V LS+++ KK +D H T I LTA DL + PT
Sbjct: 746 PPLEGVLLSVKELAELNKKYRDLPFFHQDTEEICMPSLTA-RPDL-QRVLRPT 796
>ZFIN|ZDB-GENE-090929-1 [details] [associations]
symbol:fancm "Fanconi anemia, complementation group
M" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR006166 InterPro:IPR011545 InterPro:IPR020819
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SMART:SM00891 ZFIN:ZDB-GENE-090929-1 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697
HOVERGEN:HBG081520 KO:K10896 Gene3D:3.40.50.10130 EMBL:EF088195
IPI:IPI00882629 RefSeq:NP_001107132.1 UniGene:Dr.154581
ProteinModelPortal:A8QLH8 GeneID:100006685 KEGG:dre:100006685
NextBio:20787226 Uniprot:A8QLH8
Length = 1761
Score = 952 (340.2 bits), Expect = 1.3e-97, Sum P(2) = 1.3e-97
Identities = 208/501 (41%), Positives = 301/501 (60%)
Query: 95 DAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
D A + WIYP N+P+R+YQ + + AL NTLV LPTGLGKT IA+V++YN++RWFP G
Sbjct: 62 DYSAGRVWIYPTNLPLREYQLRVCEAALLQNTLVCLPTGLGKTFIASVLMYNYYRWFPAG 121
Query: 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLE 214
KIVF AP++PLV QQIEAC+ ++GIPQE T ++TG + +R S W ++RVFF+TP +
Sbjct: 122 KIVFMAPTKPLVAQQIEACYRVMGIPQEHTAELTGSTAAPQRRSLWSSRRVFFLTPP--D 179
Query: 215 KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTI 274
+ C+VIDEAH+ATGN+AYC IREL Q R+LAL+ATPG + +
Sbjct: 180 R-------------CVVIDEAHKATGNHAYCQVIRELRKQTPQFRVLALSATPGGDVKAV 226
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL 334
Q +I NL IS +E R+E DV ++VH R +E + V +G+ R +V+ ++SRL
Sbjct: 227 QQVISNLLISHIELRSEDSPDVQTHVHQRSLEKMVVPLGESLTHYQTRYLQVLERFSSRL 286
Query: 335 SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNL--PQIKFGEVEAYFGALITLYHIRRL 392
+ + LL RD + S ++ +R++FR+ PPP++ PQ + G +E F LI+LYH L
Sbjct: 287 TQMRLLNQRDLRAFSKYQIILAREQFRRNPPPHIQGPQQQ-GVLEGDFALLISLYHGFEL 345
Query: 393 LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQ---------QSISHGAQSP- 442
L GIR + ++ + G +NE +++ L M + S G + P
Sbjct: 346 LLQMGIRSLFLFIQN-IFTGPRESSRVRNE-LQRCSLFMDLYREMENMFNTASRGLEEPY 403
Query: 443 -----KLSKMLEVLVDHFKT----KDPK--HSRVIIFSNFRGSVRDIMNALATIGDLVKA 491
KL K+ EV++ HF+T D +RV+IFS++R SV++I L LV+
Sbjct: 404 VYTHPKLQKLDEVVLRHFQTCAESSDVSAVDTRVMIFSSYRESVQEIAEMLNRHQPLVRV 463
Query: 492 TEFIXXXXXXXXXXXXXXXXXXXLE-KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
F+ + +FR GG+N +V+T +GEEGLDI EVDL++CFDA
Sbjct: 464 MTFMGQASAGRGVRGFTQKEQLEVVWRFREGGFNTLVSTCVGEEGLDIGEVDLIVCFDAQ 523
Query: 551 VSPLRMIQRMGRTGRKHDGRI 571
SP+R++QRMGRTGR+ GRI
Sbjct: 524 KSPIRLVQRMGRTGRQRQGRI 544
Score = 59 (25.8 bits), Expect = 1.3e-97, Sum P(2) = 1.3e-97
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 634 SLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQGLTFSRDDRTF-VEDEVSSDKHLGL 692
SL + H+Q P H+V HS R +M+ + L ++ V+ E+ KHL +
Sbjct: 703 SLWEWRHWQNRPLHTHRVQHSERCLHFTTIMELIDTLRHQEEEGDCSVQSELM--KHLQM 760
Query: 693 QTVEPCET 700
+ ++ +T
Sbjct: 761 EDIDGGQT 768
>POMBASE|SPAC9.05 [details] [associations]
symbol:fml1 "ATP-dependent 3' to 5' DNA helicase, FANCM
ortholog Fml1" species:4896 "Schizosaccharomyces pombe" [GO:0000732
"strand displacement" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0009378 "four-way
junction helicase activity" evidence=IDA] [GO:0031297 "replication
fork processing" evidence=IMP] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IC]
[GO:0071821 "FANCM-MHF complex" evidence=ISS] [GO:0071932
"replication fork reversal" evidence=IDA] [GO:2000042 "negative
regulation of double-strand break repair via homologous
recombination" evidence=IMP] [GO:0003690 "double-stranded DNA
binding" evidence=ISS] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC9.05 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GO:GO:0000732 GO:GO:0009378
GO:GO:0071821 eggNOG:COG1111 GO:GO:0033567 GO:GO:0071932 PIR:T39190
RefSeq:NP_593348.2 ProteinModelPortal:Q9UT23 STRING:Q9UT23
EnsemblFungi:SPAC9.05.1 GeneID:2543668 KEGG:spo:SPAC9.05
HOGENOM:HOG000076770 KO:K14635 OMA:RTENSID OrthoDB:EOG4JHGPV
NextBio:20804674 GO:GO:2000042 Uniprot:Q9UT23
Length = 834
Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
Identities = 199/506 (39%), Positives = 298/506 (58%)
Query: 77 EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGK 136
E F+ S L H ++D AA+ W+YP+NV RDYQF I + ALF N LVALPTGLGK
Sbjct: 41 EYFDANDSNRYRLQH-ELDESAAQQWVYPINVSFRDYQFNIVQKALFENVLVALPTGLGK 99
Query: 137 TLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR 196
T IAAVV+ N+ RWFP IVF AP++PLV QQ+EAC+ I GIP+ T +++G + T R
Sbjct: 100 TFIAAVVMMNYLRWFPKSYIVFMAPTKPLVTQQMEACYKITGIPKSQTAELSGHVPVTTR 159
Query: 197 ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV 256
+++++ VFFVTPQ + DI+ G C + CLVIDEAHR+TGNYAY + L
Sbjct: 160 NQYYQSRNVFFVTPQTILNDIKHGICDRTRISCLVIDEAHRSTGNYAYVEVVHLLSLSNK 219
Query: 257 QLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316
RILAL+ATPG+K + IQ++ID+L+IS +E R E+ D+S YV ++++ V++ E
Sbjct: 220 NFRILALSATPGNKLEAIQNVIDSLHISRIEIRTENSIDISQYVQKKEVDFFPVDLSAEI 279
Query: 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEV 376
+I +R ++ P +L+ + ++ + ++ ++ ++ F N P + ++
Sbjct: 280 TDIRDRFSSILEPMLQKLNKGNYYRIQNAKDITSFTVVQAKQAFLAMSGQNFPANQKWDI 339
Query: 377 EAYFGALITLYHIRRLLSSHGIRPAYEML---EEKLKQG--SFARFMSKNEDIRKVK--- 428
F AL T + LL +HGIRP Y+ L EE+ G + + + +E+ R +
Sbjct: 340 LNTFDALATFAYPLNLLLNHGIRPFYQKLREVEEECFVGRSGYKKRIINHENYRPLMDDI 399
Query: 429 --LLMQQS-ISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI 485
LL QS + H PKL + ++ ++F+ + K +R++IF R S +I+ L
Sbjct: 400 EILLRDQSFVGH----PKLEHLERIVTEYFEKEQTKDTRIMIFVEIRSSAEEILRFLGKF 455
Query: 486 GDLVKATEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
V+ FI +++F+ G N ++ATSIGEEGLDI EVD++I
Sbjct: 456 YPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMII 515
Query: 546 CFDANVSPLRMIQRMGRTGRKHDGRI 571
C+DA+ SP+RM+QRMGRTGRK G I
Sbjct: 516 CYDASASPIRMLQRMGRTGRKRKGYI 541
>UNIPROTKB|B2RTQ9 [details] [associations]
symbol:FANCM "FANCM protein" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006259 "DNA metabolic process"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781 UniGene:Hs.509229
HGNC:HGNC:23168 HOVERGEN:HBG081520 Gene3D:3.40.50.10130
EMBL:AL121809 EMBL:BC140776 EMBL:BC144511 IPI:IPI01014004
SMR:B2RTQ9 STRING:B2RTQ9 Ensembl:ENST00000542564 UCSC:uc010anf.3
Uniprot:B2RTQ9
Length = 2022
Score = 514 (186.0 bits), Expect = 1.0e-90, Sum P(5) = 1.0e-90
Identities = 91/156 (58%), Positives = 115/156 (73%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG + R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS 253
G C + CLVIDEAH+A GNYAYC A++++++
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQAVQQVIT 234
Score = 296 (109.3 bits), Expect = 1.0e-90, Sum P(5) = 1.0e-90
Identities = 61/138 (44%), Positives = 87/138 (63%)
Query: 442 PKLSKMLEVLVDHFK------TKDPKH--SRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
PKL K+ EV+++HFK T + K +RV+IFS+FR SV++I L+ +++
Sbjct: 422 PKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLSQHQPIIRVMT 481
Query: 494 FIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
F+ +++FR GGYN +V+T +GEEGLDI EVDL+ICFD+ SP
Sbjct: 482 FVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQKSP 541
Query: 554 LRMIQRMGRTGRKHDGRI 571
+R++QRMGRTGRK GRI
Sbjct: 542 IRLVQRMGRTGRKRQGRI 559
Score = 224 (83.9 bits), Expect = 1.0e-90, Sum P(5) = 1.0e-90
Identities = 50/151 (33%), Positives = 78/151 (51%)
Query: 272 QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYT 331
Q +Q +I NL I +E R+E D+ +Y H RK+E + V +G+E I +++ +
Sbjct: 227 QAVQQVITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFA 286
Query: 332 SRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRR 391
L +L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH
Sbjct: 287 RSLIQRNVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYE 346
Query: 392 LLSSHGIRPAYEMLEEKLKQGSFARFMSKNE 422
LL G+R Y L + G+ SKNE
Sbjct: 347 LLQQMGMRSLYFFLCG-IMDGTKGMTRSKNE 376
Score = 75 (31.5 bits), Expect = 1.0e-90, Sum P(5) = 1.0e-90
Identities = 38/171 (22%), Positives = 75/171 (43%)
Query: 790 QDSSPLKTSDKNYDELTVQSKAVEELTTSQAACIKDGALPISRFCRSDALPEKPLDGFEE 849
Q SS +K E T + +L+ S+ +D LP + SD + G +
Sbjct: 683 QFSSLQNEENKPAQESTT---GIHQLSLSEWRLWQDHPLPTHQVDHSDRC--RHFIGLMQ 737
Query: 850 ILDSPVLRRNQLREEDTTDETLDVNEIKEP-LSPDDEYHNDLRDSELSPRLTNLIKSGVV 908
+++ + E + L + ++ ++P +E +N D+ ++ + ++ IK+
Sbjct: 738 MIEGMRHEEGECSYELEVESYLQMEDVTSTFIAPRNESNNLASDTFITHKKSSFIKN--- 794
Query: 909 PESPINENGASNNKGRNPDLASPVKLCSIQPSKFASLGKTEKCSKYVRASQ 959
IN+ +S+ + + A VK I+P+K SL K K SK ++ Q
Sbjct: 795 ----INQGSSSSVIESDEECAEIVKQTHIKPTKIVSLKK--KVSKEIKKDQ 839
Score = 59 (25.8 bits), Expect = 7.5e-89, Sum P(5) = 7.5e-89
Identities = 27/95 (28%), Positives = 40/95 (42%)
Query: 645 PSRVHKVMHSFRTGMLIDMMQHLQGLTFSRDDRTFVEDEVSSDKHLGLQTVEPCETDERD 704
P +HK HS G L+ + S DD F +V K L + E + E D
Sbjct: 1370 PMYLHKSCHSVEDGQLLTSNE-------SEDDEIF-RRKVKRAKGNVLNSPEDQKNSEVD 1421
Query: 705 N-FHGTKK----VTDSELSTRTLGTQENHSMPQSC 734
+ H KK + SELS+ + E+ + P+ C
Sbjct: 1422 SPLHAVKKRRFPINRSELSS----SDESENFPKPC 1452
Score = 55 (24.4 bits), Expect = 3.5e-88, Sum P(7) = 3.5e-88
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 625 PTSDSTW---RPSLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQGLTFSRDDRTFVE 681
P +ST + SL + +Q P H+V HS R I +MQ ++G+ + ++ E
Sbjct: 694 PAQESTTGIHQLSLSEWRLWQDHPLPTHQVDHSDRCRHFIGLMQMIEGMRHEEGECSY-E 752
Query: 682 DEVSS 686
EV S
Sbjct: 753 LEVES 757
Score = 43 (20.2 bits), Expect = 1.0e-90, Sum P(5) = 1.0e-90
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 1015 LSSGDKSENVEPARKFKRLRKVRDCEQNKNSENMKENAVAPVVNLARRFL 1064
LSS D+SEN P + +L + C N + + ++AR+FL
Sbjct: 1439 LSSSDESENF-P-KPCSQLEDFKVCNGNARRGIKVPKRQSHLKHVARKFL 1486
Score = 43 (20.2 bits), Expect = 3.5e-88, Sum P(7) = 3.5e-88
Identities = 42/157 (26%), Positives = 67/157 (42%)
Query: 878 EPLSPDDEYHNDLRDSELSPRLTNLIKSGVVPESPI-NENGASNNKGRNPDLASPVKLCS 936
EP D + H ++ L P N ++ + SP N G +N+ N DL PV L +
Sbjct: 1051 EPSLCDCDVHKHNQNENLVPN--NRVQ---IHRSPAQNLVGENNHDVDNSDL--PV-LST 1102
Query: 937 IQPSKFASLGKTEKCSKYVRASQGNVSISPVNKKIQT-PL---LKMNHTASAGGYSPTSP 992
Q SL E V +VS+SP+N K ++ P+ ++ T + +
Sbjct: 1103 DQDE---SLLLFED----VNTEFDDVSLSPLNSKSESLPVSDKTAISETPLVSQFLISDE 1155
Query: 993 IAEETKTPLANL----ANSSCSRDWRLSSGDKSENVE 1025
+ + + L + ANS SRD R +K +N E
Sbjct: 1156 LLLDNNSELQDQITRDANSFKSRDQRGVQEEKVKNHE 1192
Score = 42 (19.8 bits), Expect = 1.3e-90, Sum P(5) = 1.3e-90
Identities = 22/103 (21%), Positives = 45/103 (43%)
Query: 955 VRASQGNVSISPVNKK---IQTPLLKMNHTASAGGYSPTSPIAEETKTPLANLANSSCSR 1011
V+ ++GNV SP ++K + +PL + S S E P CS+
Sbjct: 1401 VKRAKGNVLNSPEDQKNSEVDSPLHAVKKRRFPINRSELSSSDESENFP------KPCSQ 1454
Query: 1012 --DWRLSSGDKSENVEPARKFKRLRKVRDCEQNKNSENMKENA 1052
D+++ +G+ ++ ++ L+ V + +E +E+A
Sbjct: 1455 LEDFKVCNGNARRGIKVPKRQSHLKHVARKFLDDEAELSEEDA 1497
Score = 41 (19.5 bits), Expect = 7.5e-89, Sum P(5) = 7.5e-89
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 786 NHWKQDSSPLKTSDKNYD--ELTVQSK---AVEELTTSQAACIK 824
N + + P T D D + V K A+E+ +TS A+C K
Sbjct: 1728 NEVQSTTPPFTTVDSQKDCRKFPVPQKDGSALEDSSTSGASCSK 1771
Score = 39 (18.8 bits), Expect = 2.7e-87, Sum P(4) = 2.7e-87
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 650 KVMHSFRTGMLIDMMQHLQGLTFSR 674
++++S I+ +QHLQ + F R
Sbjct: 1844 EMLNSVNKNKFIEQIQHLQSM-FER 1867
Score = 38 (18.4 bits), Expect = 3.5e-88, Sum P(7) = 3.5e-88
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 847 FEEILDSPVLRRNQLREEDTTDETLDVNEIKEP 879
F+E D P +R +E T++ N IKEP
Sbjct: 864 FQE--DLPNDKRTSDTDEIAATCTINENVIKEP 894
>POMBASE|SPAC20H4.04 [details] [associations]
symbol:fml2 "ATP-dependent 3' to 5' DNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=ISO]
[GO:0043138 "3'-5' DNA helicase activity" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IC]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20H4.04
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG1111 GO:GO:0033567
RefSeq:NP_593624.1 ProteinModelPortal:Q9HE09
EnsemblFungi:SPAC20H4.04.1 GeneID:2542014 KEGG:spo:SPAC20H4.04
OMA:ILIVVER OrthoDB:EOG4HHSCC NextBio:20803094 Uniprot:Q9HE09
Length = 783
Score = 861 (308.1 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
Identities = 195/486 (40%), Positives = 286/486 (58%)
Query: 97 EAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKI 156
+A + WI+P R+YQ + ALF N L+ALPTGLGKT IAAVV+ N+FRWFP+ KI
Sbjct: 98 DAMQNWIFPQTQQYRNYQKEFCEQALFHNLLLALPTGLGKTFIAAVVMLNYFRWFPESKI 157
Query: 157 VFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKD 216
+F AP++PL++QQ AC N+ G+ T ++ G++SP +R + TKRVFF+TPQ L+ D
Sbjct: 158 IFLAPTKPLLLQQRVACSNVAGMSPGATAELNGEVSPDRRLFEYNTKRVFFMTPQTLQND 217
Query: 217 IQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQH 276
++ K ++CL+ DEAHRATGN++Y +R ++ R+L LTATPGS ++Q
Sbjct: 218 LKEHLLDAKSIICLIFDEAHRATGNHSYAQVMRAVLRSNSHFRVLGLTATPGSSTASVQK 277
Query: 277 IIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSA 336
++D L+IS L RNE D+ SYV ++KI+LI+V + E + + + RPY + L
Sbjct: 278 VVDCLHISKLIVRNEESIDIRSYVFHKKIQLIKVTISSEMNILKSDFANLYRPYFNFLRQ 337
Query: 337 IGLLQ-NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395
L+ N + + L S K+ + N+ + ++ + F LI+ HI LL
Sbjct: 338 KKLIPINCECLNIKAYTLFVSLRKYSFSSK-NVQSKEKSKIMSCFTLLISCAHITYLLDC 396
Query: 396 HGIRPAYEML-EEKLK-QG-----SFARFMSKNEDIRKVKLLMQ-QSISHGAQSPKLSKM 447
HGI Y+ L E K K +G SF F SK L + Q +S PK++ +
Sbjct: 397 HGIIQFYQKLVETKNKAEGKGSGQSFWLFTSKPFAFYLEHLHNKIQGLS--LNHPKMNHL 454
Query: 448 LEVLVDHFK-TKDP-KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIXXXXXXXXXX 505
LE+L +HFK T + ++ RV+IF+ FR + I L I +V+A+ FI
Sbjct: 455 LELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIRPMVRASLFIGQANSAYSTG 514
Query: 506 XXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
+++FRAG N +VATSIGEEGLDI + D++IC+DA+ SP+R IQRMGRTGR
Sbjct: 515 MNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGR 574
Query: 566 KHDGRI 571
K G++
Sbjct: 575 KKSGKV 580
Score = 57 (25.1 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 1023 NVEPARKFKRLRKVRDCEQNKNSENMKENAVAPVVNLARR 1062
N++P KF+ L+ D NS N ++++PV LA +
Sbjct: 626 NIQPIFKFQALQNNADATLILNSYNNNSSSLSPVNTLANQ 665
Score = 37 (18.1 bits), Expect = 5.6e-88, Sum P(2) = 5.6e-88
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 764 PALPFKELSHSKKKRAPDTLLLNHWKQDSSPL 795
P F+ L ++ A TL+LN + +SS L
Sbjct: 629 PIFKFQALQNN----ADATLILNSYNNNSSSL 656
>UNIPROTKB|J9NY43 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 GO:GO:0005524
GO:GO:0003677 GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335
SUPFAM:SSF52980 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004518 GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:AAEX03005706
Ensembl:ENSCAFT00000048988 Uniprot:J9NY43
Length = 2022
Score = 527 (190.6 bits), Expect = 5.1e-90, Sum P(5) = 5.1e-90
Identities = 107/229 (46%), Positives = 142/229 (62%)
Query: 29 TACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLGPKPQGTEEFNEGSSFD-E 87
T Q+ S S S CS ++P + ST F +P+ ++ + ++ E
Sbjct: 7 TLFQTWGSSISRSAGAPGCSSGPERPQSPGTSTAH-FPPAAEAQPESDDDVLLVAVYEAE 65
Query: 88 SLCHVQ---IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI 144
V+ A WIYP N PVRDYQ IT+T+LF NTLV LPTGLGKT IAAVV+
Sbjct: 66 QQLRVENGGFCTSAGSLWIYPTNCPVRDYQLQITRTSLFCNTLVCLPTGLGKTFIAAVVM 125
Query: 145 YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204
YNF+RWFP GK+VF AP++PLV QQIEAC+ ++GIPQ +MTG R W++KR
Sbjct: 126 YNFYRWFPSGKVVFMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGTTQAFTRKEIWRSKR 185
Query: 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS 253
V F+TPQV+ D+ G C + CLVIDEAH+A GNYAYC AI+++++
Sbjct: 186 VLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHKALGNYAYCQAIQQVIT 234
Score = 296 (109.3 bits), Expect = 5.1e-90, Sum P(5) = 5.1e-90
Identities = 62/138 (44%), Positives = 87/138 (63%)
Query: 442 PKLSKMLEVLVDHFK------TKDPK--HSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
PKL K+ EV+++HFK T + K +RV+IFS+FR SV++I L +++
Sbjct: 422 PKLKKLEEVVLEHFKSWNIQNTSEKKCDETRVMIFSSFRDSVQEIAEMLLQHQPVIRVMT 481
Query: 494 FIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
F+ +++FR+GGYN +V+T +GEEGLDI EVDL+ICFDA SP
Sbjct: 482 FVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSP 541
Query: 554 LRMIQRMGRTGRKHDGRI 571
+R++QRMGRTGRK GRI
Sbjct: 542 IRLVQRMGRTGRKRKGRI 559
Score = 227 (85.0 bits), Expect = 5.1e-90, Sum P(5) = 5.1e-90
Identities = 54/160 (33%), Positives = 84/160 (52%)
Query: 272 QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYT 331
Q IQ +I NL I +E R+E D+ Y H R++E + V +G+E I +V+ +
Sbjct: 227 QAIQQVITNLRIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELAAIQKAYIQVLEAFA 286
Query: 332 SRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRR 391
S L +L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH
Sbjct: 287 SSLIQRNILMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYE 346
Query: 392 LLSSHGIRPAYEML---EEKLKQGSFARF-MSKNEDIRKV 427
LL G+R Y L + K + A+ +S+NED K+
Sbjct: 347 LLQQMGMRSLYFFLCGIMDGTKGMTRAKNELSRNEDFMKL 386
Score = 49 (22.3 bits), Expect = 5.1e-90, Sum P(5) = 5.1e-90
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 624 HPTSDSTWRPSLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQGLTFSRDDRTFVEDE 683
H S S WR +Q P ++V HS R I +MQ ++G+ + ++ E E
Sbjct: 702 HQLSLSEWRV-------WQDHPFPTYQVDHSDRCHHFISIMQMIEGMRHEEGECSY-ELE 753
Query: 684 VSSDKHLGLQTVEPCETDERDNFH 707
+ S +L ++ V + R+ ++
Sbjct: 754 LKS--YLKMEDVSSTFSAPRNEYN 775
Score = 48 (22.0 bits), Expect = 6.5e-90, Sum P(5) = 6.5e-90
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 650 KVMHSFRTGMLIDMMQHLQGLTFSR 674
++++S LID +QHLQ + F R
Sbjct: 1844 EMLNSINKNKLIDQIQHLQSM-FER 1867
Score = 45 (20.9 bits), Expect = 5.1e-90, Sum P(5) = 5.1e-90
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 949 EKCSKYVRASQGNVSISPVNKK---IQTPL 975
E C + ++ ++GNV SP ++K + +PL
Sbjct: 1395 EICHRKIKKTKGNVLESPEDQKNSEVDSPL 1424
Score = 45 (20.9 bits), Expect = 6.5e-90, Sum P(5) = 6.5e-90
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 625 PTSDSTWRPSLIAFPHFQA 643
P+S+ W PS FP A
Sbjct: 1271 PSSEDKWSPSFAHFPQSAA 1289
Score = 45 (20.9 bits), Expect = 1.1e-89, Sum P(4) = 1.1e-89
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 871 LDVNEIKEPLS-PDDEYHNDLRDSELSPRLTNLIKSGVVPESPINENGASNNKGRNPDLA 929
L + ++ S P +EY N L + T+ KS + IN+ + + + A
Sbjct: 758 LKMEDVSSTFSAPRNEY-NPLANGTF----TSNKKSSFLGN--INQGSSFLMTESDEECA 810
Query: 930 SPVKLCSIQPSKFASLGKTEKCSKYVRASQ 959
K ++P+K ASL K K SK ++ Q
Sbjct: 811 EIFKQTHVKPAKIASLKK--KASKELKKDQ 838
Score = 42 (19.8 bits), Expect = 1.1e-89, Sum P(5) = 1.1e-89
Identities = 34/157 (21%), Positives = 61/157 (38%)
Query: 892 DSELSPRLTNLIKSGVVPESPINENGASNNKGRNPD--LASPVKLCSIQPSKFASLGKTE 949
++ELS + + S ES NE +S N + L+ + ++ SL
Sbjct: 1489 EAELSQQEAEYVSSDENDESE-NEQDSSLLDFLNDETQLSQAINDSEMRAIYMKSLHSPL 1547
Query: 950 KCSKY--VRASQGNVSI-SPVNKKIQTPLLKMNHTASAGGYSPTSPIAEETKTPLANLAN 1006
++Y V N++I S + ++ +T L Y S +EE N+
Sbjct: 1548 MSNRYKMVHKKHTNINIFSQIPEQDETYLEDSFCVDEDESYKSQS--SEEEVCVDFNIIT 1605
Query: 1007 SSCSRDWRLSSGDKSENVEPARKFKRLRKVRDCEQNK 1043
C +SG K A K K++ ++C ++K
Sbjct: 1606 EDC-----FASGSKKYKTRRAVKLKQMEMRQNCARSK 1637
Score = 42 (19.8 bits), Expect = 9.3e-45, Sum P(3) = 9.3e-45
Identities = 12/61 (19%), Positives = 26/61 (42%)
Query: 299 YVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRD 358
Y R ++L ++EM Q ++ +I P S + R+ ++P + S+
Sbjct: 1616 YKTRRAVKLKQMEMRQNCARSKKKLSRIILPDDSSEEENTVNDKRESNIVNPSTVNKSKQ 1675
Query: 359 K 359
+
Sbjct: 1676 Q 1676
Score = 39 (18.8 bits), Expect = 3.9e-44, Sum P(3) = 3.9e-44
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 660 LIDMMQHLQGLTFSRDDRTFVEDEVSSDKHLGLQTVEPCET 700
L +M +G+T ++++ + ED + HL C T
Sbjct: 360 LCGIMDGTKGMTRAKNELSRNEDFMKLYNHLACMFAHTCGT 400
Score = 38 (18.4 bits), Expect = 2.8e-89, Sum P(5) = 2.8e-89
Identities = 16/84 (19%), Positives = 33/84 (39%)
Query: 938 QPSKFASLGKTEKCSKYVRASQGN-VSISPVNKKIQTPLLKMNHTASAGGYSPTSPIAEE 996
Q S F E+C++ + + I+ + KK L K + + + + +
Sbjct: 796 QGSSFLMTESDEECAEIFKQTHVKPAKIASLKKKASKEL-KKDQPMKENNDTVMNSLDTD 854
Query: 997 TKTPLANLANSSCSRDWRLSSGDK 1020
T + N++ D R S+ D+
Sbjct: 855 GSTTVENISQVDRLNDKRASNTDE 878
Score = 37 (18.1 bits), Expect = 9.1e-89, Sum P(5) = 9.1e-89
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 675 DDRTFVEDEVSSDKHLGLQTVEPCETD 701
D + + DE+ D++ LQ C+T+
Sbjct: 1145 DSQFLISDELLLDRNPQLQDQIICDTN 1171
>UNIPROTKB|I3LAY7 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006259 "DNA
metabolic process" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:CU570961
Ensembl:ENSSSCT00000030082 Uniprot:I3LAY7
Length = 2028
Score = 519 (187.8 bits), Expect = 5.5e-90, Sum P(7) = 5.5e-90
Identities = 93/156 (59%), Positives = 114/156 (73%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I +TALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 88 AGALWIYPTNCPVRDYQLNIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 147
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 148 FMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGSTQVFTRKEIWDSKRVLFLTPQVMVNDL 207
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS 253
G C + CLVIDEAHRA GNYAYC A++++++
Sbjct: 208 SRGACPAAEIKCLVIDEAHRALGNYAYCQAVQQVIT 243
Score = 304 (112.1 bits), Expect = 5.5e-90, Sum P(7) = 5.5e-90
Identities = 64/138 (46%), Positives = 87/138 (63%)
Query: 442 PKLSKMLEVLVDHFK------TKDPK--HSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
PKL K+ EV+V+HFK T D K +RV+IFS+FR SV++I L +++
Sbjct: 431 PKLKKLEEVVVEHFKSWNAQNTSDKKCDKTRVMIFSSFRDSVQEIAEMLLRHQPIIRVMT 490
Query: 494 FIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
F+ +++FR+GGYN +V+T +GEEGLDI EVDL+ICFDA SP
Sbjct: 491 FVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSP 550
Query: 554 LRMIQRMGRTGRKHDGRI 571
+R++QRMGRTGRK GRI
Sbjct: 551 IRLVQRMGRTGRKRQGRI 568
Score = 212 (79.7 bits), Expect = 5.5e-90, Sum P(7) = 5.5e-90
Identities = 50/170 (29%), Positives = 86/170 (50%)
Query: 272 QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYT 331
Q +Q +I NL I +E R+E D+ Y H R++E + V + +E I +++ +
Sbjct: 236 QAVQQVITNLLIEQIELRSEDAPDILPYSHERRVEKLVVPLSEELAAIQKAYIQILEAFA 295
Query: 332 SRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRR 391
L +L RD L+ ++ +RD+FR+ P PN+ ++ G +E F I+LYH
Sbjct: 296 HSLIQRNVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGMQQGIIEGEFAICISLYHGYE 355
Query: 392 LLSSHGIRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISH 437
LL G+R Y L + K + A+ +S+NED K+ ++ +H
Sbjct: 356 LLQQMGMRSLYFFLCGIMDGTKGMTRAKNELSRNEDFMKLYNHLEYMFAH 405
Score = 62 (26.9 bits), Expect = 5.5e-90, Sum P(7) = 5.5e-90
Identities = 28/113 (24%), Positives = 55/113 (48%)
Query: 844 LDGFEEILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDDEY-HNDLRDSELSPRLTNL 902
L F+E L+S E+D + E +++++ + D++ ++ D E+ R +
Sbjct: 1349 LQSFKETLNSTFDNSGFSIEKDKSKEQINLHQSRHSAEGDEQLTSSESEDDEIFQRKSKK 1408
Query: 903 IKSGVVPESPINENGASNNKGRNPDLASPVKLCSIQPSK--FASLGKTEKCSK 953
K V+ ESP N+ N++ +P A VK + P++ F+S ++E K
Sbjct: 1409 NKRNVL-ESPENQK---NSEVDSPLHA--VKKRRVPPNRLDFSSSDESENFHK 1455
Score = 60 (26.2 bits), Expect = 9.4e-90, Sum P(6) = 9.4e-90
Identities = 66/264 (25%), Positives = 109/264 (41%)
Query: 787 HWKQDSS-PL-KTSDKNYDELTVQ--SKAVEELTTSQAACIKDGALPISRFCRSDALPEK 842
H QD S PL + D ++++++ + + L S + + AL +S+F SD L
Sbjct: 1104 HSDQDESLPLFEDVDTEFNDVSLSPLNSKCKSLCVSDKTAVNEMAL-VSQFLISDELL-- 1160
Query: 843 PLDGFEEILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDDEYHNDLRDSELSPRLTNL 902
LD E D + + ED D V+E E L +DEY D S +L
Sbjct: 1161 -LDNNSEPQDQIIGDTVSWKHEDLRD----VHE--EKLK-NDEYGFDCSKYLFSVTF-DL 1211
Query: 903 IKSGVVPESPINENGASNNKGR-NPDLASPVKLCSIQPSKFASLGKTEKCSKYVRA-SQG 960
+ I E+ + NK + + DL P + I+ A+ + + S
Sbjct: 1212 GFCSPDSDDEILEHASDTNKNKVSDDL--PGRHLDIKEISDANCVSHQAAIPRDQVDSSM 1269
Query: 961 NVSIS-PVNKKIQTPLLKM-------NHTASAGGYSPTS-PIAEE-TKTPL--ANLANS- 1007
++S++ P ++ Q P L N ++ GYS S P+ E+ TPL +N NS
Sbjct: 1270 SISVTNPSSEDKQNPTLTCFPMSAAKNKKGTSPGYSQFSLPVGEKIVSTPLCKSNTRNSF 1329
Query: 1008 SCSRDWRLSSGDKSENVEPARKFK 1031
S R + D ++ + FK
Sbjct: 1330 SKKRIDMARNSDSNKGKVNLQSFK 1353
Score = 50 (22.7 bits), Expect = 5.5e-90, Sum P(7) = 5.5e-90
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 634 SLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQGLTFSRDDRTFVEDEVSS 686
SL + +Q P ++V HS R I++MQ ++G+ + ++ E E+ S
Sbjct: 715 SLCEWRLWQDHPLPTYQVNHSDRCHHFINIMQMIEGMRHEEGECSY-ELEIKS 766
Score = 47 (21.6 bits), Expect = 1.9e-88, Sum P(7) = 1.9e-88
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 904 KSGVVPESPINENGASNNKGRNPDLASPVKLCSIQPSKFASLGKTEKCSKYVRASQ 959
K P+S IN++ + + + A K I+P+K AS+ K K SK ++ Q
Sbjct: 789 KKSSFPKS-INQDRSFLMTESDEEFAEIFKQTHIKPTKIASVKK--KASKELKKGQ 841
Score = 43 (20.2 bits), Expect = 5.4e-88, Sum P(6) = 5.4e-88
Identities = 46/217 (21%), Positives = 88/217 (40%)
Query: 838 ALPEKPLDGFEEILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDDEYHNDLRDSELSP 897
AL + L E +LD+ ++Q+ + + + D+ ++ E +DEY D S
Sbjct: 1148 ALVSQFLISDELLLDNNSEPQDQIIGDTVSWKHEDLRDVHEEKLKNDEYGFDCSKYLFSV 1207
Query: 898 RLTNLIKSGVVPESPINENGASNNKGR-NPDLASPVKLCSIQPSKFASLGKTEKCSKYVR 956
+L + I E+ + NK + + DL P + I+ A+ + +
Sbjct: 1208 TF-DLGFCSPDSDDEILEHASDTNKNKVSDDL--PGRHLDIKEISDANCVSHQAAIPRDQ 1264
Query: 957 A-SQGNVSIS-PVNKKIQTPLLKMNHTASAGGYSPTSPIAEETKTPLANLANSS--CSRD 1012
S ++S++ P ++ Q P L ++A TSP + P+ S+ C +
Sbjct: 1265 VDSSMSISVTNPSSEDKQNPTLTCFPMSAAKNKKGTSPGYSQFSLPVGEKIVSTPLCKSN 1324
Query: 1013 WRLSSGDKSENVEPARKFKRLRKVRDCEQNKNSENMK 1049
R +S K KR+ R+ + NK N++
Sbjct: 1325 TR-NSFSK----------KRIDMARNSDSNKGKVNLQ 1350
Score = 42 (19.8 bits), Expect = 5.5e-90, Sum P(7) = 5.5e-90
Identities = 14/64 (21%), Positives = 31/64 (48%)
Query: 987 YSPTSPIAEETKTPLANLANSSCSRDWRLSSGDKSENVEPARKFKRLRKVRDCEQNKNSE 1046
Y S +E ++ + ++ C D+ L S D + K +R K+++ ++ +NS
Sbjct: 1580 YLEDSFCVDEEESCKSQSSDEVCV-DFNLISEDSFASGSKKYKTRRAVKLKEMKKRQNSV 1638
Query: 1047 NMKE 1050
+ K+
Sbjct: 1639 HSKK 1642
Score = 41 (19.5 bits), Expect = 5.5e-90, Sum P(7) = 5.5e-90
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 558 QRMGRTGRKHDG-RIPHIFKPEVQFVELSIEQ 588
Q R R D I I P+VQF+ L E+
Sbjct: 669 QLWSRRYRLRDSDEIKEIVLPQVQFLSLQSEE 700
Score = 39 (18.8 bits), Expect = 1.3e-87, Sum P(7) = 1.3e-87
Identities = 28/112 (25%), Positives = 48/112 (42%)
Query: 863 EEDTTDETLDVNEIKEPLSPD-DEYHNDLRDSELSPRLTNLIKSGVVPESPINENGASNN 921
E++ T + I EP D D H D+++ L I +G P+ + E
Sbjct: 1038 EKNCLSGTTNDTIIDEPNYCDYDIVHKDIKNENLVSNNHIQINTGP-PKCFVEE------ 1090
Query: 922 KGRNPDLASPVKLCSIQPSKFASLGKTEKCSKYVRASQGNVSISPVNKKIQT 973
++PD+A+ L + + SL E V +VS+SP+N K ++
Sbjct: 1091 --KHPDIAN-YGLPVLHSDQDESLPLFED----VDTEFNDVSLSPLNSKCKS 1135
>DICTYBASE|DDB_G0274841 [details] [associations]
symbol:fncM "ATP-dependent DNA helicase"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274841 GO:GO:0005524
GO:GO:0003677 GO:GO:0006974 EMBL:AAFI02000012 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1111
KO:K10896 RefSeq:XP_644014.1 ProteinModelPortal:Q8T145
EnsemblProtists:DDB0217507 GeneID:8619444 KEGG:ddi:DDB_G0274841
InParanoid:Q8T145 Uniprot:Q8T145
Length = 1789
Score = 823 (294.8 bits), Expect = 4.3e-88, Sum P(4) = 4.3e-88
Identities = 203/566 (35%), Positives = 300/566 (53%)
Query: 26 EIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQST--LDKFFGNLGPKPQGTEEFNEGS 83
+I+ Q S P+ N NK P+T +T +DKF G + T++ EG
Sbjct: 392 QINKPLQPSLPTKPPIKNNTTLPTTNKSPTTTTTTTKFIDKFKG----MKRYTKDLPEGF 447
Query: 84 SFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVV 143
+ + ++YP + +R+YQF ++A NT++ LPTGLGKT IA+++
Sbjct: 448 EISSENQEPYRNEKMIGEFLYPED-NIREYQFKFIQSAFLENTMICLPTGLGKTFIASIL 506
Query: 144 IYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQI-SPTKRASFWKT 202
+ N++ WFP K+VF ++ LV QQIEA H GIP+ +I TG S KR S W +
Sbjct: 507 MLNYYHWFPKSKLVFLVHTKSLVSQQIEAFHRDTGIPKSDSIQFTGDTTSKLKRQSLWNS 566
Query: 203 KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILA 262
KRVFF TPQ+L DI SG C + + C+VIDEAHRA GNY YC AI+ ++ V R+LA
Sbjct: 567 KRVFFSTPQILANDIGSGNCDPRSICCIVIDEAHRAQGNYDYCVAIKLILKVNRFFRVLA 626
Query: 263 LTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNR 322
LTATPGS IQ +I+NL IS +E R+E D+ Y+H++K +++ + + + I
Sbjct: 627 LTATPGSNNAAIQKVINNLLISNMELRSEDSADIKPYIHSKKTDVLSIALSDDYKSIIKD 686
Query: 323 IWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNS--RDKFRQAPPPNLPQI-----KFGE 375
I L +L T +P + +S +K + N P KF
Sbjct: 687 YEFFIVDKLKVLFEFNILN----PTTTPDRVSHSFILEKIKSIQFSNSPVYGSGGNKFKL 742
Query: 376 VEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFA--RFMSKNEDIRKVKLLMQQ 433
+ A L TLY LL HG+ Y+ + L+ S + SKNE+ ++ + +++
Sbjct: 743 LRALV-TLQTLYQGYALLKVHGLESFYDKISN-LEDASSKTIKAFSKNENWKQFIIKIKK 800
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD------ 487
SI +G KL K+ +VL++HF++ +P+ S+V+IF FR SV++I++ ++ +
Sbjct: 801 SIDNGLVHDKLIKLNDVLIEHFQSNNPRSSKVMIFVQFRRSVQEIIDFISNNNNGGGGGG 860
Query: 488 --LVKATEFIXXXXXXXXXXXXXXXXXXX-LEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
L+K F L F G NV+V+T IGEEGLDI EVDLV
Sbjct: 861 KSLIKVMPFYGQSATDKGVKGIHKKEQQAILNSFVNGDINVLVSTCIGEEGLDIGEVDLV 920
Query: 545 ICFDANVSPLRMIQRMGRTGRKHDGR 570
+C+D S L+ QR GRTGRK DGR
Sbjct: 921 VCYDVQQSSLKNTQRTGRTGRKRDGR 946
Score = 53 (23.7 bits), Expect = 4.3e-88, Sum P(4) = 4.3e-88
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 640 HFQALPSRVHKVMHSFRTGMLIDMMQHLQGLTFSRD 675
H ++ + + + HS +T +LI + + + + +S D
Sbjct: 1079 HLNSISTDIEDIKHSDKTNILISISKSIDAIKYSSD 1114
Score = 53 (23.7 bits), Expect = 4.3e-88, Sum P(4) = 4.3e-88
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 863 EEDTTDETLDVNEIKEPLSPDDE-----YHNDLRDSELSPRLTNLIKSGVV--PESPINE 915
E D + + EI + ++ +E YH+ ++ +P+L+++ ++ P+S +
Sbjct: 1711 ENDYESGSDSIEEIDKSINSSEEKRQKKYHHHNNNNN-NPKLSSIHSKPIIDSPKSNNSN 1769
Query: 916 NGASNNKGR----NPDLAS 930
N SN+K R N DL S
Sbjct: 1770 NNNSNSKNRKDFSNHDLFS 1788
Score = 50 (22.7 bits), Expect = 8.8e-88, Sum P(4) = 8.8e-88
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 852 DSPVLRRNQLREEDTTDETLD-VNEIKEPLSPDDEYHND 889
DS + RRN ++D DE D + E K L D + ND
Sbjct: 1583 DSEIERRNSQDDDDDDDEEEDGIGENKYDLH--DSFIND 1619
Score = 49 (22.3 bits), Expect = 1.1e-87, Sum P(4) = 1.1e-87
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 963 SISPVNKKIQTPLLKMN--HTASAGGYSPTSPIAEETKTPLANLANS 1007
S S +NK P K T+S T+PI T L+NL NS
Sbjct: 1209 STSTINKISPPPQQKQPIISTSSINQSMKTNPIIISNNTVLSNLNNS 1255
Score = 42 (19.8 bits), Expect = 4.3e-88, Sum P(4) = 4.3e-88
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 7 PIEINGDD------DDEFD---WEAAVREIDTACQSSKPSTSNSTNFNLCSKAN 51
PIEI DD DD + E++ D SS S+S +TN N S N
Sbjct: 203 PIEIELDDFELSFSDDILNKNSGESSSAPKDMEVDSSNSSSSGTTNVNNNSSNN 256
>ASPGD|ASPL0000062874 [details] [associations]
symbol:AN10063 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR003903 SMART:SM00726 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 HOGENOM:HOG000076770
EnsemblFungi:CADANIAT00002426 OMA:YNTIVAT Uniprot:C8VUA7
Length = 971
Score = 648 (233.2 bits), Expect = 6.1e-84, Sum P(3) = 6.1e-84
Identities = 154/437 (35%), Positives = 232/437 (53%)
Query: 33 SSKPSTSNSTNFN-LCSKANKKPSTCKQSTL-DKFFGNLGPKPQGTEEFNEGSSFDESLC 90
S P T+ + S+A +P +Q+TL D + +P ++ E
Sbjct: 80 SLSPPTTQAPKIPWTTSEARNRPLGVRQTTLFDIAARSSATQPLVGKQITVPPDKVEPPT 139
Query: 91 HVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR 149
+++ +A +TW+YP N+ RDYQF IT+ LF N LVALPTGLGKT IAA ++ N+ R
Sbjct: 140 QHKLNQDALETWVYPTNLGKTRDYQFNITQKGLFYNLLVALPTGLGKTFIAATIMLNWLR 199
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
W +I+F AP++PLV QQI AC I GIP+ T +TG+ P RA WK+KRVFF+T
Sbjct: 200 WTKSAQIIFVAPTKPLVAQQISACLRIAGIPRSQTTMLTGEAPPGIRAEEWKSKRVFFMT 259
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQ L D++SG K +V LV+DEAHRATG YAY ++ L R+LALTATPGS
Sbjct: 260 PQTLTNDLKSGIADPKRIVLLVVDEAHRATGGYAYVEVVKFLRRFNQSFRVLALTATPGS 319
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
+++Q +ID L I+ +E R E D+ YVH R ++ + E + + + ++P
Sbjct: 320 TVESVQAVIDGLDIARVEIRTEHSLDIREYVHARNTDIQTFQNSDEMILCMDLLSSTLQP 379
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFG---EVEAYFGALITL 386
+L + RD +L+P L +R ++ + FG ++ A F L ++
Sbjct: 380 LVDQLRTLNAFWGRDPMSLTPYGLTKARQQWMLSDAGR--NAHFGLKNKINAIFTVLASM 437
Query: 387 YHIRRLLSSHGIRPAYEML------EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGA- 439
H LL HGI P Y L + K G + R + ++E +K+ + +
Sbjct: 438 AHGIDLLKYHGITPLYRHLLHFQSNTDGKKGGKYQRQIVQDEHFKKLMNYLTPWTRNPEF 497
Query: 440 -QSPKLSKMLEVLVDHF 455
PKL + +V+++HF
Sbjct: 498 IGHPKLEYLRQVVLNHF 514
Score = 256 (95.2 bits), Expect = 6.1e-84, Sum P(3) = 6.1e-84
Identities = 55/140 (39%), Positives = 80/140 (57%)
Query: 442 PKLSKMLEVLVDHFKTK-DPKH---------SRVIIFSNFRGSVRDIMNALATIGDLVKA 491
PKL + +V+++HF + H +RV+IF +FR S ++ L +++
Sbjct: 501 PKLEYLRQVVLNHFMDAGEGTHGAGNENQTATRVMIFVHFRDSAEEVTRVLKRYEPMIRP 560
Query: 492 TEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
F+ ++KF+ G YN IVATSIGEEGLDI EVDL++C+D++
Sbjct: 561 HVFVGQSSAKGSEGMGQKTQLDIIQKFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSA 620
Query: 552 SPLRMIQRMGRTGRKHDGRI 571
SP+RM+QRMGRTGRK G I
Sbjct: 621 SPIRMLQRMGRTGRKRAGNI 640
Score = 48 (22.0 bits), Expect = 6.1e-84, Sum P(3) = 6.1e-84
Identities = 20/96 (20%), Positives = 40/96 (41%)
Query: 587 EQYVSRGKKVKDDHAITTPIFKEKL-TAAETDLIAKYFHP---TSDSTWR-PSLIAFPHF 641
+Q +R ++ + P + L T A+ + +++ TS R P AFP
Sbjct: 755 KQNETRKARIPTPEPVPVPDINDVLLTPAQQKELEQHYQNVGGTSPEFIRYPRSDAFPKL 814
Query: 642 QALPSRVHKVMHSFRTGMLIDMMQHLQGLTFSRDDR 677
Q++ V H T ++D +Q + + ++R
Sbjct: 815 QSIGRPTKMVGHGSLTQRVVDALQRINQIGADCEER 850
Score = 40 (19.1 bits), Expect = 2.8e-60, Sum P(2) = 2.8e-60
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 590 VSRGKKVKDDHAITTPIFKEKLTAAETDLIAKY 622
+ + KK + + T I +E L E DLI Y
Sbjct: 584 IQKFKKGTYNTIVATSIGEEGLDIGEVDLIVCY 616
Score = 39 (18.8 bits), Expect = 3.6e-60, Sum P(2) = 3.6e-60
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 1063 FLGMSPIQNKHGRGRKKPMD 1082
F+G S + G G+K +D
Sbjct: 563 FVGQSSAKGSEGMGQKTQLD 582
>FB|FBgn0038889 [details] [associations]
symbol:CG7922 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0003677 GO:GO:0006200 GO:GO:0016887 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10896
GeneTree:ENSGT00640000091530 RefSeq:NP_650971.2
ProteinModelPortal:Q9VDA0 SMR:Q9VDA0 IntAct:Q9VDA0
MINT:MINT-4080825 EnsemblMetazoa:FBtr0084109 GeneID:42543
KEGG:dme:Dmel_CG7922 UCSC:CG7922-RA FlyBase:FBgn0038889
InParanoid:Q9VDA0 OMA:HRAKGRY OrthoDB:EOG451C5Q PhylomeDB:Q9VDA0
GenomeRNAi:42543 NextBio:829338 ArrayExpress:Q9VDA0 Bgee:Q9VDA0
Uniprot:Q9VDA0
Length = 1489
Score = 614 (221.2 bits), Expect = 5.6e-75, Sum P(4) = 5.6e-75
Identities = 133/311 (42%), Positives = 177/311 (56%)
Query: 95 DAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
D WIYP N+P+R YQ I ++ALF NTLV LPTGLGKT IAAVV+YNF+RW+P G
Sbjct: 43 DMATGHNWIYPNNLPLRSYQQTIVQSALFKNTLVVLPTGLGKTFIAAVVMYNFYRWYPKG 102
Query: 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLE 214
KIVF AP+RPLV QQI A I+ P E T+ +TGQ+ KRA W +KRVFF TPQV+
Sbjct: 103 KIVFMAPTRPLVSQQIHASQKIMPFPSEDTVQLTGQLPRPKRAELWASKRVFFATPQVVH 162
Query: 215 KDI--QSGTCLMKY--LVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
D+ G C + + +V+DEAHRA G YAY LM+ R+LAL+ATPG
Sbjct: 163 SDMLEADGECSFPFGSIKLIVVDEAHRAKGRYAYTQVADCLMARNRYFRMLALSATPGRT 222
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+ + + NLYIS L+ R ++ DV Y+H R I I V + + E R+ ++I PY
Sbjct: 223 MEDVAAVCRNLYISNLQVRWDTSIDVQPYIHRRTIRTIVVSLKERIKEPRERLLQIIEPY 282
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKF--RQAPPPNLPQIKFGEVEAYFGALITLYH 388
+L + + T+S LL + F R A P + F I++YH
Sbjct: 283 LRQLMEAEIFKGNK-GTVSRNSLLFEQKSFVERSAQGQRHPDHNI--IMGNFAMCISMYH 339
Query: 389 IRRLLSSHGIR 399
L+ HG+R
Sbjct: 340 SLDLMERHGLR 350
Score = 218 (81.8 bits), Expect = 5.6e-75, Sum P(4) = 5.6e-75
Identities = 51/131 (38%), Positives = 74/131 (56%)
Query: 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIXXXXXXX 502
K K+ +VLV HF+ +P SR I+F +R SV I L +++ F+
Sbjct: 415 KYEKLRQVLVQHFQA-NPD-SRAIVFCEYRESVMLIHRLLLQHRPVLRPRCFVGQGSTVG 472
Query: 503 XXXXXXXXXXXXL-EKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD-ANVSPLRMIQRM 560
+ FR+G NV+VATSIGEEGLD+ EV++++CFD + +P R IQR+
Sbjct: 473 ASYALTQKQQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVCFDICSTNPTRFIQRI 532
Query: 561 GRTGRKHDGRI 571
GRTGRK +G +
Sbjct: 533 GRTGRKKNGEV 543
Score = 60 (26.2 bits), Expect = 5.6e-75, Sum P(4) = 5.6e-75
Identities = 34/173 (19%), Positives = 75/173 (43%)
Query: 883 DDEYHNDLRDSELSPRLTNLIKSGVVPESPINENGASNNKGRNPDLASPVKLC--SIQPS 940
++EYH+ + SEL L L S +N AS +K + + +P+ + +I+ +
Sbjct: 926 EEEYHSGMEASELGDNLGRL-------NSLMN---ASESKIKATERIAPIPVVDSTIETN 975
Query: 941 KFASLGKTEKCSKY-VRASQGNVSISPVNKKIQTPLLKMNHT-----ASAGGYSPTSPIA 994
F ++ ++++ + + S G + VNK + + ++ T +S I
Sbjct: 976 HFPAVEESQRSTPISIADSSGESNHCAVNKNSEIYPMSIDETKVEVKSSLNLKMHAESIV 1035
Query: 995 EETKTPLANLANSSCSRDWRLSSGDKSENVEPARKFKRLRKVRDCEQNKNSEN 1047
E+ L + ++ L+S K ++ E + + ++CEQ + + N
Sbjct: 1036 EDLDIDLDDFLEPM-DKELELASQTKGKSQENIVDHQMEKLEKNCEQKETAHN 1087
Score = 46 (21.3 bits), Expect = 1.6e-73, Sum P(4) = 1.6e-73
Identities = 20/89 (22%), Positives = 39/89 (43%)
Query: 895 LSPRLTNLIKSGVVPESPINE---NGASNNKGRNPDLA--SPVKLCSIQPSKFASLGKTE 949
L+ +L + V+P P N N N K NP + SP + + ++ G+
Sbjct: 1184 LAAKLAAKAAAKVLPCPPPNSVGLNSPENRKRTNPSIQEKSP-SIFDLYLNRMRGRGRLA 1242
Query: 950 KCSKYV-RASQGNVSISPVNKKIQTPLLK 977
K ++ + R + N +IS + +P+ +
Sbjct: 1243 KAAENLHRITSTNPTISVPKDEEDSPIAR 1271
Score = 45 (20.9 bits), Expect = 5.6e-75, Sum P(4) = 5.6e-75
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 571 IPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYFH--PTSD 628
+P F+P+ + E +E K K A T K K A+T + KYF P ++
Sbjct: 588 VPSKFQPKCE--EKHMEPVAEEKPKPKSA-AKTKESRKRKQPVAQTGSLRKYFKESPPTE 644
Query: 629 S 629
S
Sbjct: 645 S 645
Score = 39 (18.8 bits), Expect = 8.7e-73, Sum P(4) = 8.7e-73
Identities = 18/69 (26%), Positives = 27/69 (39%)
Query: 823 IKDGALPISRFCRSDALPEKPLDGFEEILDSPVLRRNQLREEDTTDETLDVNEIKEPL-- 880
I D +P R ++ P F + + EE+ ET +K+ +
Sbjct: 1307 ILDTQMPDPR--KTPTRPRHKRSKFNSFILDEAEKSGSDHEEE--GETTIGTYLKDSMIV 1362
Query: 881 SPDDEYHND 889
S DDE HND
Sbjct: 1363 SSDDEDHND 1371
>CGD|CAL0005976 [details] [associations]
symbol:MPH1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0000725 "recombinational
repair" evidence=IEA] [GO:0060543 "negative regulation of strand
invasion" evidence=IEA] [GO:0070336 "flap-structured DNA binding"
evidence=IEA] [GO:0043138 "3'-5' DNA helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0005976 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006281 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 EMBL:AACQ01000084 EMBL:AACQ01000083
KO:K14635 RefSeq:XP_715573.1 RefSeq:XP_715628.1
ProteinModelPortal:Q5A1A0 STRING:Q5A1A0 GeneID:3642769
GeneID:3642817 KEGG:cal:CaO19.10436 KEGG:cal:CaO19.2919
Uniprot:Q5A1A0
Length = 1187
Score = 601 (216.6 bits), Expect = 3.1e-72, Sum P(2) = 3.1e-72
Identities = 156/422 (36%), Positives = 220/422 (52%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H +D E KT+IYP N +RDYQ+ I + A + N LVALPTGLGKT IA+ V+ NF RW
Sbjct: 118 HHAMDFENLKTYIYPTNFEIRDYQYNIVERAFYDNLLVALPTGLGKTFIASTVMLNFLRW 177
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
FP KI+F AP+RPLV QQI+AC +I GIP + + + RA W +++VFF TP
Sbjct: 178 FPISKIIFMAPTRPLVAQQIKACCSIAGIPSSKVAILLDK-TRRNRAEIWNSRQVFFTTP 236
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
QV+E D+ SG K + LVIDEAHRA GNY+Y ++ + RILALTATP S
Sbjct: 237 QVVENDLASGVVNPKSIALLVIDEAHRAKGNYSYNNVVKFINRFSDSYRILALTATPASD 296
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+ +Q IIDNL IS +E R E D+ ++ + +E E E + E I P
Sbjct: 297 VEGVQQIIDNLNISKVEVRTEQSIDIVRHMKRKTVERKTCYPSSEITECIELLAEGITPV 356
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGE--VEAYFGALITLY 387
+ GLL D ++ + + K P +P+ +K+ + G + Y
Sbjct: 357 LNTAKERGLLDLTDPTRINFLQCMEISRKI--VANPTIPEGLKWSNYFILQLLGMVGQCY 414
Query: 388 HIRRLLSSHGIRP--AY---EMLEEKLKQGSFARFMSKNEDIR---KVKLLMQQ------ 433
R L+ +GIR +Y + LE K K + N D + LM +
Sbjct: 415 ---RRLNIYGIRSFQSYFNEKFLEFKTKWNAKKSTNKLNADFYFSDPITTLMDRVEELSK 471
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
++++G PK+ ++E L D FK + SRVIIF+ FR S +I+ + D K
Sbjct: 472 TLTYG--HPKIEALMEELDDFFKNHETAGSRVIIFTEFRESALEIVQCIEKANDNRKPHI 529
Query: 494 FI 495
FI
Sbjct: 530 FI 531
Score = 214 (80.4 bits), Expect = 3.1e-72, Sum P(2) = 3.1e-72
Identities = 45/103 (43%), Positives = 70/103 (67%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHI 574
++KF+ G +N++VATSIGEEGLDI EVDL+IC+D+ SP++ IQRMGRTGRK DG++ +
Sbjct: 585 IKKFKKGVFNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRTGRKRDGKVLML 644
Query: 575 FKP--EVQFVELS-----IEQYVSRGK--KVKDDHAITTPIFK 608
F E +F + I+Q++ +G +++ H + +K
Sbjct: 645 FSSNEESKFDKAMGGYEYIQQHIMKGDFIQLRPQHRMIPDEYK 687
Score = 43 (20.2 bits), Expect = 3.1e-54, Sum P(2) = 3.1e-54
Identities = 23/80 (28%), Positives = 35/80 (43%)
Query: 558 QRMGRTGRKHDGRIPHIFKPE-VQFVELSIE---QYVSRGKKVKDDHAITTPIFKEKLTA 613
++ G+T +K D R E Q +S + + + + KK + + T I +E L
Sbjct: 549 KQKGQTKKKKDERPSTRSSSENAQMTGMSQKLQKEIIKKFKKGVFNILVATSIGEEGLDI 608
Query: 614 AETDLIAKYFHPTSDSTWRP 633
E DLI Y DST P
Sbjct: 609 GEVDLIICY-----DSTSSP 623
Score = 41 (19.5 bits), Expect = 3.2e-53, Sum P(3) = 3.2e-53
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 544 VICF-DANVSPLRMIQRMGRTGRKHDGRIPHIF----KPEVQF-VE-LSIEQYVSRGKKV 596
VI F + S L ++Q + + +D R PHIF K + +F VE ++ + KK
Sbjct: 501 VIIFTEFRESALEIVQCIEKA---NDNRKPHIFIGQSKEKEKFDVENFGKKKQKGQTKKK 557
Query: 597 KDDHAIT 603
KD+ T
Sbjct: 558 KDERPST 564
Score = 37 (18.1 bits), Expect = 3.2e-53, Sum P(3) = 3.2e-53
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 947 KTEKCSKYVRASQGNVSISPVNKKIQTPLLK 977
K E+ S R+S N ++ +++K+Q ++K
Sbjct: 558 KDERPS--TRSSSENAQMTGMSQKLQKEIIK 586
>SGD|S000001441 [details] [associations]
symbol:MPH1 "3'-5' DNA helicase involved in error-free bypass
of DNA lesions" species:4932 "Saccharomyces cerevisiae" [GO:0006281
"DNA repair" evidence=IEA] [GO:0060543 "negative regulation of
strand invasion" evidence=IMP;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=IGI]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IGI] [GO:0070336
"flap-structured DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000725 "recombinational repair"
evidence=IMP] InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271
Pfam:PF04851 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000001441 GO:GO:0005524 GO:GO:0005634 EMBL:BK006942
EMBL:X79743 EMBL:Z38062 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0036297 GO:GO:0000725 eggNOG:COG1111
GO:GO:0033567 GO:GO:0043138 GeneTree:ENSGT00640000091530 KO:K14635
OrthoDB:EOG4JHGPV PIR:S48436 RefSeq:NP_012267.1
ProteinModelPortal:P40562 SMR:P40562 DIP:DIP-5016N IntAct:P40562
MINT:MINT-493277 STRING:P40562 PaxDb:P40562 PeptideAtlas:P40562
EnsemblFungi:YIR002C GeneID:854818 KEGG:sce:YIR002C CYGD:YIR002c
HOGENOM:HOG000066122 OMA:KNREEIW NextBio:977660
Genevestigator:P40562 GermOnline:YIR002C GO:GO:0070336
GO:GO:0060543 Uniprot:P40562
Length = 993
Score = 597 (215.2 bits), Expect = 3.2e-72, Sum P(3) = 3.2e-72
Identities = 145/425 (34%), Positives = 223/425 (52%)
Query: 77 EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGK 136
EE SF + H ++D +A ++YP N VRDYQ+ I +LF NTL A+PTG+GK
Sbjct: 56 EEIQRDVSFGPT--HHELDYDALSFYVYPTNYEVRDYQYTIVHKSLFQNTLCAIPTGMGK 113
Query: 137 TLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR 196
T IA+ V+ N+FRW KI+F AP+RPLV QQI+AC I GIP + T + + S R
Sbjct: 114 TFIASTVMLNYFRWTKKAKIIFTAPTRPLVAQQIKACLGITGIPSDQTAILLDK-SRKNR 172
Query: 197 ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV 256
W KRVFF TPQV+E D++ G K +VCLVIDEAHRATG+ AY ++ +
Sbjct: 173 EEIWANKRVFFATPQVVENDLKRGVLDPKDIVCLVIDEAHRATGSSAYTNVVKFIDRFNS 232
Query: 257 QLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316
R+LALTATP S + +Q +++NL IS +E R E D+ Y+ RK E IEV + E
Sbjct: 233 SYRLLALTATPASDLEGVQEVVNNLDISKIEIRTEESMDIVKYMKKRKKEKIEVPLLLEI 292
Query: 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGE 375
+I ++ ++P + +G+ + D ++ + K P +P+ IK+
Sbjct: 293 EDIIEQLGMAVKPVLQQAIELGIYEECDPSQINAFKAMQQSQKI--IANPTIPEGIKWRN 350
Query: 376 VEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNED-----------I 424
L + + + L +GIR + + K + + + K+ + +
Sbjct: 351 F-FILQLLNNVGQMLKRLKIYGIRTFFNYFQNKCTEFTTKYNLKKSTNKIAAEFYYHPIL 409
Query: 425 RKVKLLMQQSISHG--AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL 482
+ +K + +S KL + + L+D F+ K SRVIIF+ R S +I+ +
Sbjct: 410 KNIKNQCENYLSDPKFVGHGKLQCVRDELMDFFQ-KRGSDSRVIIFTELRESALEIVKFI 468
Query: 483 ATIGD 487
++ D
Sbjct: 469 DSVAD 473
Score = 216 (81.1 bits), Expect = 3.2e-72, Sum P(3) = 3.2e-72
Identities = 42/76 (55%), Positives = 54/76 (71%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHI 574
+ F+ G YNV+V TSIGEEGLDI EVDL+IC+D SP++ IQRMGRTGRK DG+I +
Sbjct: 560 IHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRMGRTGRKRDGKIVLL 619
Query: 575 FKPEVQF-VELSIEQY 589
F + E ++E Y
Sbjct: 620 FSSNESYKFERAMEDY 635
Score = 39 (18.8 bits), Expect = 3.2e-72, Sum P(3) = 3.2e-72
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 593 GKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPTSDST 630
GKKVK AIT +K E K+F P + T
Sbjct: 697 GKKVKPKKAIT-----KKKRVQENKKPKKFFMPDNVET 729
Score = 38 (18.4 bits), Expect = 7.0e-54, Sum P(2) = 7.0e-54
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 587 EQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKY 622
++ + KK + + + T I +E L E DLI Y
Sbjct: 557 KEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICY 592
>UNIPROTKB|F6QFS2 [details] [associations]
symbol:F6QFS2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GeneTree:ENSGT00640000091530
EMBL:DAAA02052960 EMBL:DAAA02052959 IPI:IPI00843333
Ensembl:ENSBTAT00000043352 OMA:SHERQLE Uniprot:F6QFS2
Length = 373
Score = 669 (240.6 bits), Expect = 5.6e-65, P = 5.6e-65
Identities = 126/271 (46%), Positives = 168/271 (61%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I +TALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 85 AGALWIYPTNCPVRDYQLHIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 144
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 145 FMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGSTQAFTRKEIWSSKRVLFLTPQVMVNDL 204
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC I + R+L L P S + +Q +
Sbjct: 205 SRGACPAAEIKCLVIDEAHKALGNYAYCQVILLKIFYSQNFRLLNLRIPPVSSIKAVQQV 264
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 265 ITNLLIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELEAIQKAYIQILEAFASSLIQR 324
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNL 368
+L +D L+ ++ +RD+FR+ P PN+
Sbjct: 325 NVLMRKDIPNLTKYQIILARDQFRKNPSPNI 355
>UNIPROTKB|F1NE03 [details] [associations]
symbol:Gga.50035 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=IEA] [GO:0043240 "Fanconi anaemia nuclear complex"
evidence=IEA] [GO:0071821 "FANCM-MHF complex" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0004518 GO:GO:0031297
GO:GO:0008026 GO:GO:0000712 GO:GO:0071821 GO:GO:0043240
InterPro:IPR010994 SUPFAM:SSF47781 OMA:QMGMRSL Gene3D:3.40.50.10130
GeneTree:ENSGT00640000091530 EMBL:AADN02004087 EMBL:AADN02004088
IPI:IPI00590518 Ensembl:ENSGALT00000020359 ArrayExpress:F1NE03
Uniprot:F1NE03
Length = 1836
Score = 421 (153.3 bits), Expect = 1.2e-58, Sum P(4) = 1.2e-58
Identities = 85/234 (36%), Positives = 131/234 (55%)
Query: 189 GQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAI 248
G R W ++RVFF+TPQ++ D+ GTC + CLV+DEAH+A GN+AYC +
Sbjct: 1 GGTQALSRRELWASRRVFFLTPQIMVNDLSRGTCPAVEVKCLVVDEAHKALGNHAYCQVV 60
Query: 249 RELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELI 308
+EL Q R+LALTATPGS + +Q ++ NL I+ +E +E ++ Y H R++E I
Sbjct: 61 KELSRYTTQFRVLALTATPGSDTKAVQQVVSNLLIAQIELCSEDSPEIQPYSHERQVEKI 120
Query: 309 EVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNL 368
V +G+E I V+ + RL +G+L RD +L+ ++ +RD++R+ P P
Sbjct: 121 VVPLGEELGGIQRAYIHVLETFAGRLIKLGVLARRDVPSLTKYQIILARDQYRKNPSPQN 180
Query: 369 PQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNE 422
++ G +E F I+LYH LL G+R + L + GS +KNE
Sbjct: 181 VGMQPGIIEGDFALCISLYHGYELLQQMGVRSLFIYLCG-IMDGSKGLTRTKNE 233
Score = 301 (111.0 bits), Expect = 1.2e-58, Sum P(4) = 1.2e-58
Identities = 63/162 (38%), Positives = 95/162 (58%)
Query: 419 SKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTK--DPKHS-------RVIIFS 469
S N ++ K + + + PKL K+ E++++HFK++ D S RV+IFS
Sbjct: 258 SANGNLHKSRTVSENKKEFIYSHPKLKKLEEIVIEHFKSRKTDQTTSGGTCVDTRVMIFS 317
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVAT 529
+FR SV++I L+ +V+ F+ +++FR GGYN +V+T
Sbjct: 318 SFRDSVQEIAEMLSRFSPVVRVMTFVGHSTGKSTKGFTQKEQLEVVKRFREGGYNTLVST 377
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+GEEGLDI EVDL+ICFDA SP+R++QRMGRTGR+ GR+
Sbjct: 378 CVGEEGLDIGEVDLIICFDAQKSPIRLVQRMGRTGRQRQGRV 419
Score = 49 (22.3 bits), Expect = 1.4e-32, Sum P(4) = 1.4e-32
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 660 LIDMMQHLQGLTFSRDDRTFVEDEVSSDKHLGLQTVEPCETDERDNFHGTKKVTDSE 716
L +M +GLT ++++ ED + + L + C+T N H ++ V++++
Sbjct: 217 LCGIMDGSKGLTRTKNELGRNEDFMRLYQQLTDMFSDTCQTSANGNLHKSRTVSENK 273
Score = 43 (20.2 bits), Expect = 1.2e-58, Sum P(4) = 1.2e-58
Identities = 28/135 (20%), Positives = 50/135 (37%)
Query: 841 EKPLDGFEEILDSPVLRRNQLREEDT--TDETLDVNEIKEPLSPDDEYHNDLRDSELSPR 898
E+ +G + +++P L D T +N+ +P L+ +S
Sbjct: 1061 EEIFEGDTDAMNTPKLNSASRSRADVQLTANRKSLNDGCRVQTPPKWDCKGLKGRNISTP 1120
Query: 899 LTNLIKSGVVPESPINENGASNNKGRNPDLASPVKLCSIQPSKFASLGKTEKCSKYVRAS 958
L ++SG V ++ + A GR ASP + + +S T + K S
Sbjct: 1121 LP--LQSGHVRDTAVPGGTAGGRTGRGSPGASPPSPATPTGRRVSSAEATRRIHKVNPNS 1178
Query: 959 QGNVSISPVNKKIQT 973
Q N S + + T
Sbjct: 1179 QRNSFGSSASDALHT 1193
Score = 39 (18.8 bits), Expect = 3.1e-58, Sum P(4) = 3.1e-58
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 956 RASQGNVSISPVNKKIQTPLLKMNHTASAGGYSPTSPIAEETKTPLANLANS 1007
R+ G ++ + +Q N +A G + SP + T L L +S
Sbjct: 1558 RSGSGKEALQAAAQHLQLESSVKNSAGNAPGATKASPALLDGDTALCVLVDS 1609
Score = 39 (18.8 bits), Expect = 4.0e-32, Sum P(3) = 4.0e-32
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKA 491
K SR+I+ S+ G ++ N T +A
Sbjct: 1471 KPSRIIVLSDSSGEETNVSNEKGTAAHCSRA 1501
Score = 37 (18.1 bits), Expect = 1.2e-58, Sum P(4) = 1.2e-58
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 1047 NMKENAVAPVVNLARRFLGMS 1067
NM++N APV R + +S
Sbjct: 1459 NMEQNCSAPVQKKPSRIIVLS 1479
Score = 37 (18.1 bits), Expect = 3.1e-58, Sum P(4) = 3.1e-58
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 862 REEDTTDETLDVNEIKEPLSPDDE 885
+EE+ T D+NE + L D E
Sbjct: 716 KEEEIEKVTFDLNEFND-LCDDGE 738
>DICTYBASE|DDB_G0294407 [details] [associations]
symbol:helF "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0040029 "regulation of gene
expression, epigenetic" evidence=IMP] [GO:0031149 "sorocarp stalk
cell differentiation" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00358 SMART:SM00490
InterPro:IPR014720 dictyBase:DDB_G0294407 GO:GO:0005524
GO:GO:0005634 Gene3D:3.30.160.20 GenomeReviews:CM000151_GR
EMBL:AAFI02000008 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0040029 GO:GO:0008026 GO:GO:0003724
GO:GO:0031149 eggNOG:COG1111 RefSeq:XP_001134628.1
ProteinModelPortal:Q86L44 EnsemblProtists:DDB0233379 GeneID:8618629
KEGG:ddi:DDB_G0294407 OMA:ANIQSRG ProtClustDB:CLSZ2733552
Uniprot:Q86L44
Length = 837
Score = 189 (71.6 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 60/234 (25%), Positives = 111/234 (47%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
RDYQ + + ++ + + LPTGLGKTLI+ +VI + P +IVF PLV+QQ
Sbjct: 233 RDYQCELYRKSMEKDIICCLPTGLGKTLISCLVIKKMKQLNPSKQIVFIVDRIPLVIQQS 292
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ G+ + G+ K + V V + K + +G + +
Sbjct: 293 DVIETETGLK---VLSAHGETF--KPVQLKQRFDVLVVIGDLFNKLLSNGDLNILSFCLI 347
Query: 231 VIDEAHRATGNYAYCTAIRE-LMSVP--VQLRILALTATPGSKQQTIQHIIDNLYISTL- 286
VIDEAH +++ +R+ L ++P +IL LTA+P K+ ++ IS +
Sbjct: 348 VIDEAHHIVKEHSFAKLLRDKLNTIPEICHPKILGLTASPAGKKDFFNTLLSLKLISKVS 407
Query: 287 --EYRNESDQDVSSYVHNRKIELIEV---EMGQEAVEINNRIWEVIRPYTSRLS 335
E ++Q + Y++ + I++I + + + +++I + ++I Y LS
Sbjct: 408 RCEIIKPTNQSIIPYINQKNIKIIPIPTNNLERHSIQI---LKDLISKYKPNLS 458
Score = 104 (41.7 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 41/136 (30%), Positives = 57/136 (41%)
Query: 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI--GDLVKATEFIXXXXX 500
KL L++L D K+ D K IIF R + + + L + GD +
Sbjct: 566 KLEIALQIL-DEKKSDDLK---AIIFVKTRDVAKKVYSLLDQLRMGDRFSFIKPNLVVGH 621
Query: 501 XXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+E+FR+ NVIVATS+ EEG D+ E ++VI D + IQ
Sbjct: 622 GSIGGMSISSQKKAIEEFRSDQCNVIVATSVVEEGFDVPECNIVIRLDPPTTVTANIQSR 681
Query: 561 GRTGRKHDGRIPHIFK 576
GR R D I K
Sbjct: 682 GRL-RNRDSYFYGIVK 696
Score = 38 (18.4 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 23/112 (20%), Positives = 44/112 (39%)
Query: 805 LTVQSKAVEELTTSQAACIKDGALPISRFCRSDALPEKPLDGFEEILDSPVLRRNQLREE 864
++ Q KA+EE + Q I ++ F + LD + + + R +LR
Sbjct: 629 ISSQKKAIEEFRSDQCNVIVATSVVEEGFDVPECNIVIRLDP-PTTVTANIQSRGRLRNR 687
Query: 865 DTTDETLDVNEIKEPLSPDDEYHNDLRDSELSPRLTNLIKSGVVPESPINEN 916
D+ + ++ +P D+ Y N +K+G +P S +N
Sbjct: 688 DSY--FYGIVKVDDPRE-DNIYEFFKNQERYLEEAINFLKTGELPISLKQQN 736
>TAIR|locus:2199081 [details] [associations]
symbol:AT1G36020 "AT1G36020" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR eggNOG:COG1111
EMBL:AC021666 IPI:IPI00545293 PIR:A86482 RefSeq:NP_174833.1
UniGene:At.51969 EnsemblPlants:AT1G36020.1 GeneID:840505
KEGG:ath:AT1G36020 TAIR:At1g36020 InParanoid:Q9C8V9
PhylomeDB:Q9C8V9 ProtClustDB:CLSN2681942 Genevestigator:Q9C8V9
Uniprot:Q9C8V9
Length = 116
Score = 199 (75.1 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 49/103 (47%), Positives = 63/103 (61%)
Query: 4 NKIPIEINGDDDDEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLD 63
+++PIE ++D EFDWEAAV+EID AC + + T NL KP +QSTLD
Sbjct: 13 SRVPIETI-EEDGEFDWEAAVKEIDLACLKTTNAHPPITE-NLT-----KPPAKRQSTLD 65
Query: 64 KFFGNLGPKPQGTEEFNE--GSSFDESLCHVQIDAEAAKTWIY 104
KF G PKP+ + +E G+ D SL V+ID EAAKTWIY
Sbjct: 66 KFIGRTEPKPENHQVVSECGGNDNDNSLL-VEIDPEAAKTWIY 107
>RGD|1310093 [details] [associations]
symbol:Dhx58 "DEXH (Asp-Glu-X-His) box polypeptide 58"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA;ISO] [GO:0003727 "single-stranded RNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA;ISO]
[GO:0009615 "response to virus" evidence=IEA;ISO] [GO:0032480
"negative regulation of type I interferon production"
evidence=IEA;ISO] [GO:0032481 "positive regulation of type I
interferon production" evidence=IEA;ISO] [GO:0039534 "negative
regulation of MDA-5 signaling pathway" evidence=IEA;ISO]
[GO:0039536 "negative regulation of RIG-I signaling pathway"
evidence=IEA;ISO] [GO:0045088 "regulation of innate immune
response" evidence=ISO] [GO:0045824 "negative regulation of innate
immune response" evidence=IEA;ISO] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA;ISO] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=IEA;ISO]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 RGD:1310093 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0051607 GO:GO:0003725
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0032480 GO:GO:0039534 GO:GO:0039536 GO:GO:0045824
GeneTree:ENSGT00510000046789 GO:GO:1900245 GO:GO:1900246 CTD:79132
KO:K12649 OMA:ELRPYQW OrthoDB:EOG44QT15 GO:GO:0032481
IPI:IPI00371058 RefSeq:NP_001092258.1 UniGene:Rn.105654
Ensembl:ENSRNOT00000024718 GeneID:303538 KEGG:rno:303538
UCSC:RGD:1310093 NextBio:651548 Uniprot:D3ZD46
Length = 678
Score = 215 (80.7 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 116/483 (24%), Positives = 208/483 (43%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V GK+V LV Q
Sbjct: 3 LRPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGKVVVLVNRVHLVNQ 62
Query: 169 QIEACHNIVGIPQEWTID-MTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E + + ++WT+ ++G + RA F R + T ++L ++S
Sbjct: 63 HAEEFRRM--LDKQWTVTTLSGDMG--SRAGFGLLARSHDLLICTAELLHLALKSSEEDE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSKQQT-I 274
+ +V+DE H + Y T + + ++ ++L LTA+PG+ T +
Sbjct: 119 HVELTEFSLIVVDECHHTHKDTIYNTILSRYLEHKLKKAKPLPQVLGLTASPGTGGATKL 178
Query: 275 QHIIDNLY--ISTLE-YRNESDQDVSSYV--HNRKIELIEVEMGQEAVE--INNRIWEVI 327
Q ID++ + L+ +R S ++ S + HN K + ++ Q + + + +++
Sbjct: 179 QGAIDHILQLCANLDTWRIMSPKNCYSQLLEHNPK-PCKQYDLCQRRTQDPFGDLLKKLM 237
Query: 328 RPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY 387
+ +L L Q Q + S+D ++ + Y AL
Sbjct: 238 KQIHQQLEMPDLKQQFGTQMYEQQVVQLSKDAAEAGLQEQ--RVYALHLRRYNDALYIHD 295
Query: 388 HIRRLLSSHGIRPAYEMLEEKLK-QGSFAR--FMSKNEDIRKVKLLMQQSISHGAQSPKL 444
+R + + ++ Y+ E LK Q A + +D RK + Q + G ++PKL
Sbjct: 296 TVRAWDALNMLQDFYDT-ERALKTQMVHAERWLLELFDDHRKA---LAQFAAQGPENPKL 351
Query: 445 SKMLE-VLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKATEFIXXXX 499
+MLE +L+ F + P H+R IIF+ R + ++ L L +K I
Sbjct: 352 -EMLEGILLKQFGS--PDHTRGIIFTRTRQTASSLLLWLRQQPCLQTVNIKPQMLIGAGN 408
Query: 500 XXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQR 559
+++FR G N++VATS+ EEGLDI + ++V+ + + + M+Q
Sbjct: 409 TGQSTHMTQKDQQEVIQEFRDGKLNLLVATSVAEEGLDIAQCNVVVRYGLLTNEISMVQA 468
Query: 560 MGR 562
GR
Sbjct: 469 RGR 471
>MGI|MGI:1931560 [details] [associations]
symbol:Dhx58 "DEXH (Asp-Glu-X-His) box polypeptide 58"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO;IDA] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0032480 "negative
regulation of type I interferon production" evidence=ISO;IMP]
[GO:0032481 "positive regulation of type I interferon production"
evidence=IMP] [GO:0039534 "negative regulation of MDA-5 signaling
pathway" evidence=ISO] [GO:0039536 "negative regulation of RIG-I
signaling pathway" evidence=ISO;IMP] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0045088 "regulation of innate immune
response" evidence=ISO] [GO:0045824 "negative regulation of innate
immune response" evidence=ISO;IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:1900245 "positive regulation of MDA-5 signaling pathway"
evidence=IMP] [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IMP] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1931560 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003727 GO:GO:0045087 GO:GO:0051607 GO:GO:0009615
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 eggNOG:COG1111 GeneTree:ENSGT00510000046789
GO:GO:1900245 GO:GO:1900246 CTD:79132 HOGENOM:HOG000230992
HOVERGEN:HBG106019 KO:K12649 OMA:ELRPYQW OrthoDB:EOG44QT15
GO:GO:0032481 EMBL:AF316999 EMBL:AF317000 EMBL:AL591469
EMBL:BC029209 IPI:IPI00319899 RefSeq:NP_084426.2 UniGene:Mm.271830
ProteinModelPortal:Q99J87 SMR:Q99J87 STRING:Q99J87
PhosphoSite:Q99J87 PaxDb:Q99J87 PRIDE:Q99J87
Ensembl:ENSMUST00000017974 GeneID:80861 KEGG:mmu:80861
InParanoid:A2A5E9 NextBio:350167 Bgee:Q99J87 CleanEx:MM_DHX58
Genevestigator:Q99J87 GermOnline:ENSMUSG00000017830 Uniprot:Q99J87
Length = 678
Score = 141 (54.7 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 38/141 (26%), Positives = 69/141 (48%)
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM------NA 481
K ++ Q + G ++PKL + +L+ F + P H+R IIF+ R + ++
Sbjct: 335 KNVLGQLAARGPENPKLEMLERILLKQFGS--PGHTRGIIFTRTRQTASSLLLWLRQQPC 392
Query: 482 LATIGDLVKATEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEV 541
L T+G +K I +++FR G +++VATS+ EEGLDI +
Sbjct: 393 LQTVG--IKPQMLIGAGNTSQSTHMTQKDQQEVIQEFRDGILSLLVATSVAEEGLDIAQC 450
Query: 542 DLVICFDANVSPLRMIQRMGR 562
++V+ + + + M+Q GR
Sbjct: 451 NVVVRYGLLTNEISMVQARGR 471
Score = 127 (49.8 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 49/187 (26%), Positives = 83/187 (44%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V GK+V LV Q
Sbjct: 3 LRPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGKVVVLVNRVHLVSQ 62
Query: 169 QIEACHNIVGIPQEWTID-MTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E + + + WT+ ++G + RA F R + T ++L+ + S
Sbjct: 63 HAEEFRRM--LDKHWTVTTLSGDMG--SRAGFGLMARSHDLLICTAELLQLALNSSEEDE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSKQQT-I 274
++ +V+DE H + Y T + + ++ ++L LTA+PG+ T +
Sbjct: 119 HVELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKKAEPLPQVLGLTASPGTGGATKL 178
Query: 275 QHIIDNL 281
Q ID++
Sbjct: 179 QGAIDHI 185
>UNIPROTKB|K7GMB7 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00510000046789 EMBL:CU856598
Ensembl:ENSSSCT00000033560 Uniprot:K7GMB7
Length = 588
Score = 139 (54.0 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 40/132 (30%), Positives = 62/132 (46%)
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKATE 493
G ++PKL + E+L FK PK R IIF+ R S ++ L L ++A
Sbjct: 345 GPENPKLEVLKEILQKQFK--GPKSPRGIIFTRTRQSAHSLLLWLQQQPSLQTVDIRAQL 402
Query: 494 FIXXXXXXXXXXXXXXXXXXX---LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
I ++KFR G N++VATS+ EEGLDI + ++V+ +
Sbjct: 403 LIGAGNSSQSTPMTQMTQRDQQEVIQKFRTGALNLLVATSVAEEGLDIPQCNVVVRYGLL 462
Query: 551 VSPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 463 TNEISMVQARGR 474
Score = 130 (50.8 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 57/215 (26%), Positives = 95/215 (44%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGRNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTID-MTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E + + + W I ++G + P RA F R + T ++L+K + S
Sbjct: 63 HCEEFSRM--LDRRWAITTLSGDMGP--RAGFGHLARSHDLLICTAELLQKALTSEEEEE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS-KQQTI 274
+ LV+DE H + Y + + + Q ++L LTA+PG+ + T+
Sbjct: 119 HVELNVFSLLVVDECHHTHKDTVYNIILSQYLKHKFQRTKPLPQVLGLTASPGTGRASTL 178
Query: 275 QHIIDNLY--ISTLE-YRNESDQDVSSYV--HNRK 304
ID++ + L+ +R S Q+ S + H+R+
Sbjct: 179 DGAIDHILQLCANLDTWRIMSPQNSRSQLQEHSRQ 213
Score = 37 (18.1 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 1034 RKVRDCEQNKNSENMKENAVAPV 1056
R++R + N+ E++ E AVA V
Sbjct: 491 RELRREQTNEALESLMEQAVAAV 513
>UNIPROTKB|F1S0P6 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IEA] [GO:1900245 "positive regulation of MDA-5
signaling pathway" evidence=IEA] [GO:0045824 "negative regulation
of innate immune response" evidence=IEA] [GO:0039536 "negative
regulation of RIG-I signaling pathway" evidence=IEA] [GO:0039534
"negative regulation of MDA-5 signaling pathway" evidence=IEA]
[GO:0032481 "positive regulation of type I interferon production"
evidence=IEA] [GO:0032480 "negative regulation of type I interferon
production" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727 "single-stranded
RNA binding" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0051607
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 GeneTree:ENSGT00510000046789 GO:GO:1900245
GO:GO:1900246 OMA:ELRPYQW GO:GO:0032481 EMBL:CU856598
Ensembl:ENSSSCT00000018960 Ensembl:ENSSSCT00000035155
Uniprot:F1S0P6
Length = 681
Score = 139 (54.0 bits), Expect = 8.7e-13, Sum P(3) = 8.7e-13
Identities = 40/132 (30%), Positives = 62/132 (46%)
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKATE 493
G ++PKL + E+L FK PK R IIF+ R S ++ L L ++A
Sbjct: 345 GPENPKLEVLKEILQKQFK--GPKSPRGIIFTRTRQSAHSLLLWLQQQPSLQTVDIRAQL 402
Query: 494 FIXXXXXXXXXXXXXXXXXXX---LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
I ++KFR G N++VATS+ EEGLDI + ++V+ +
Sbjct: 403 LIGAGNSSQSTPMTQMTQRDQQEVIQKFRTGALNLLVATSVAEEGLDIPQCNVVVRYGLL 462
Query: 551 VSPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 463 TNEISMVQARGR 474
Score = 130 (50.8 bits), Expect = 8.7e-13, Sum P(3) = 8.7e-13
Identities = 57/215 (26%), Positives = 95/215 (44%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGRNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTID-MTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E + + + W I ++G + P RA F R + T ++L+K + S
Sbjct: 63 HCEEFSRM--LDRRWAITTLSGDMGP--RAGFGHLARSHDLLICTAELLQKALTSEEEEE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS-KQQTI 274
+ LV+DE H + Y + + + Q ++L LTA+PG+ + T+
Sbjct: 119 HVELNVFSLLVVDECHHTHKDTVYNIILSQYLKHKFQRTKPLPQVLGLTASPGTGRASTL 178
Query: 275 QHIIDNLY--ISTLE-YRNESDQDVSSYV--HNRK 304
ID++ + L+ +R S Q+ S + H+R+
Sbjct: 179 DGAIDHILQLCANLDTWRIMSPQNSRSQLQEHSRQ 213
Score = 37 (18.1 bits), Expect = 8.7e-13, Sum P(3) = 8.7e-13
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 1034 RKVRDCEQNKNSENMKENAVAPV 1056
R++R + N+ E++ E AVA V
Sbjct: 491 RELRREQTNEALESLMEQAVAAV 513
>TAIR|locus:2149259 [details] [associations]
symbol:DCL4 "dicer-like 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006396
"RNA processing" evidence=ISS;RCA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010050 "vegetative phase change"
evidence=RCA;IMP] [GO:0010267 "production of ta-siRNAs involved in
RNA interference" evidence=RCA;IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA;IMP] [GO:0051607
"defense response to virus" evidence=RCA;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IGI;RCA] [GO:0009616 "virus induced gene silencing"
evidence=IGI;RCA] [GO:0010599 "production of lsiRNA involved in RNA
interference" evidence=IMP] [GO:0006353 "DNA-dependent
transcription, termination" evidence=IMP] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00035 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170
Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358
SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010599 GO:GO:0010267 GO:GO:0010050 EMBL:AF296825
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0010216 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ118423 IPI:IPI00521227
RefSeq:NP_197532.3 UniGene:At.31201 PDB:2KOU PDBsum:2KOU
ProteinModelPortal:P84634 SMR:P84634 MINT:MINT-6948367
STRING:P84634 PaxDb:P84634 PRIDE:P84634 EnsemblPlants:AT5G20320.1
GeneID:832154 KEGG:ath:AT5G20320 TAIR:At5g20320
HOGENOM:HOG000083706 InParanoid:P84634 OMA:RNLLHNR PhylomeDB:P84634
ProtClustDB:CLSN2702253 EvolutionaryTrace:P84634
Genevestigator:P84634 GO:GO:0006353 GO:GO:0009616 Uniprot:P84634
Length = 1702
Score = 224 (83.9 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 121/477 (25%), Positives = 211/477 (44%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKI-VFAAPSRPLVM 167
R YQ + K A N +V L TG GKT IA ++IY P + +F AP+ LV
Sbjct: 125 RRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSPKKSVCIFLAPTVALVE 184
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQSGTCL 223
QQ + + V + I G+ K S W+ + V +TPQ+L ++Q
Sbjct: 185 QQAKVIADSVNF--KVAIHCGGK-RIVKSHSEWEREIAANEVLVMTPQILLHNLQHCFIK 241
Query: 224 MKYLVCLVIDEAHRAT--GNYAYCTAIRELM-SVPVQL-RILALTATP----GSKQ-QTI 274
M+ + L+ DE H A N+ Y ++ S +Q RI +TA+P GS Q + +
Sbjct: 242 MECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQRPRIFGMTASPVVGKGSFQSENL 301
Query: 275 QHIIDNL--YISTLEYRNESDQDVSSYVHNRKIELIEVEMG-QEAVEINNRIWEVIRPYT 331
I++L ++ Y ES+ + +V + +++ +A + R ++
Sbjct: 302 SKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSALSDASQSTIRYENMLEDIK 361
Query: 332 SR-LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNL--PQIKFGEVEAYFGALITLYH 388
R L+++ LL + +QT + LL+ + +++ NL + G A A I L
Sbjct: 362 QRCLASLKLLIDT-HQTQT---LLSMKRLLKRSHD-NLIYTLLNLGLWGAIQAAKIQLNS 416
Query: 389 IRRLLSSH-GIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKM 447
+ G P ++ + L + A +D LL ++ S KL ++
Sbjct: 417 DHNVQDEPVGKNPKSKICDTYLSMAAEALSSGVAKDENASDLLSLAALKEPLFSRKLVQL 476
Query: 448 LEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKA--TEFIXXXXXXXXXX 505
+++L F+ +P H + IIF N + R + L + +L+++ ++F+
Sbjct: 477 IKIL-SVFRL-EP-HMKCIIFVNRIVTARTLSCILNNL-ELLRSWKSDFLVGLSSGLKSM 532
Query: 506 XXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
L++F++ N++VAT +GEEGLDI LVI +D + IQ GR
Sbjct: 533 SRRSMETI-LKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGR 588
Score = 41 (19.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 886 YHNDLRDSELSPRLTNLIKSGVVPESPINEN 916
+H+ L + EL+ R +N++ + + I +N
Sbjct: 1140 HHDSLDEGELTRRRSNVVNNSNLCRLAIKKN 1170
Score = 38 (18.4 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 522 GYNVIVATSIGEEGLDIMEVDLVICFDANV--SPLRMIQR-MGRTGRKHDGRIP 572
GYN + GLD+ ++++ F N S +I+R + + K + R+P
Sbjct: 1554 GYNEDPIDVVDLVGLDVENLNILETFGGNSERSSSYVIRRGLPQAPSKTEDRLP 1607
>UNIPROTKB|E2QXT4 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00510000046789 OMA:ELRPYQW EMBL:AAEX03006454
Ensembl:ENSCAFT00000024900 Uniprot:E2QXT4
Length = 680
Score = 203 (76.5 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 114/489 (23%), Positives = 199/489 (40%)
Query: 106 VNVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164
V + +R YQ+ + AL N +V LPTG GKT AA V K+V
Sbjct: 1 VRMELRPYQWEVIMPALEGKNIIVWLPTGAGKTRAAAYVAKRHLETVDQAKVVVLVNRVH 60
Query: 165 LVMQQIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSG 220
LV Q E ++G + W I ++G + P RA F R + T ++L+ + S
Sbjct: 61 LVTQHCEEFSRMLG--KRWAIITLSGDMGP--RAGFGHLARSHDLIICTAELLQMALTSP 116
Query: 221 T----CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSK- 270
+ LV+DE H + Y + + +Q ++L LTA+PG+
Sbjct: 117 EEEEHVELNAFSLLVVDECHHTHKDTVYNLILSRYLEHKLQRTRPLPQVLGLTASPGTGG 176
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
T+ ID +I L ++ +S H +++ + ++ + R + P+
Sbjct: 177 ASTLDGAID--HILQLCANLDTWHIMSPENHRPQLQEHSAQPCKQYSLCHRRSQD---PF 231
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGAL-ITLYHI 389
L L +R + L + LN RD Q + ++ +A + H+
Sbjct: 232 GDMLKK---LMDRIHNRLE-MPALN-RDFGTQTYEQQVVELSQDAAQAGLQQRRVYALHL 286
Query: 390 RRLLSSHGIRPAYEMLEEKLKQGSF--ARFMSKNEDIRKVKLLM------QQSISHGA-- 439
RR + I ++ G F +K + ++ + L+ + ++H A
Sbjct: 287 RRYNDALLIHDTVRAVDALKSLGDFYDRERATKTQVLQAERWLLALFDDYKNELAHLATQ 346
Query: 440 --QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKATE 493
++PKL + ++L + F D R IIF+ R S ++ L L ++A
Sbjct: 347 TPENPKLEMLEQILREQFGHSDSP--RGIIFTQTRQSTHSLLLWLQQQPGLQTVDIRADL 404
Query: 494 FIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
I + KFR G N++VATS+ EEGLDI + ++V+ + +
Sbjct: 405 LIGAGNSSQNTHMTQRDQQEVIRKFRVGTLNLLVATSVAEEGLDIPQCNVVVRYGLLSNE 464
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 465 ISMVQARGR 473
>MGI|MGI:2442858 [details] [associations]
symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 58"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0002230 "positive regulation of defense response
to virus by host" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=ISO;IDA] [GO:0003727
"single-stranded RNA binding" evidence=ISO;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005856 "cytoskeleton" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005923 "tight
junction" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=ISO] [GO:0009597 "detection of virus" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0015629 "actin
cytoskeleton" evidence=ISO] [GO:0016020 "membrane" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0030054 "cell junction" evidence=IEA] [GO:0030334 "regulation
of cell migration" evidence=ISO] [GO:0032587 "ruffle membrane"
evidence=ISO] [GO:0032727 "positive regulation of interferon-alpha
production" evidence=ISO] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISO;IMP] [GO:0039529 "RIG-I
signaling pathway" evidence=ISO] [GO:0042802 "identical protein
binding" evidence=ISO] [GO:0042993 "positive regulation of
transcription factor import into nucleus" evidence=ISO] [GO:0042995
"cell projection" evidence=IEA] [GO:0043330 "response to exogenous
dsRNA" evidence=IMP] [GO:0045087 "innate immune response"
evidence=ISO;IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS50209 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2442858
GO:GO:0005829 GO:GO:0005524 GO:GO:0046872 GO:GO:0015629
GO:GO:0008270 GO:GO:0003727 GO:GO:0045944 GO:GO:0045087
GO:GO:0002230 GO:GO:0009615 GO:GO:0030334 GO:GO:0005923
EMBL:AL831793 EMBL:CH466538 GO:GO:0003690 Reactome:REACT_107772
GO:GO:0032587 GO:GO:0003725 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0042993 GO:GO:0043330 GO:GO:0032727 eggNOG:COG1111
GeneTree:ENSGT00510000046789 GO:GO:0032728 CTD:23586
HOGENOM:HOG000230911 HOVERGEN:HBG052325 KO:K12646 OMA:KCKAFAC
OrthoDB:EOG4SQWW0 GO:GO:0009597 GO:GO:0039529 EMBL:AY553221
EMBL:AK049305 EMBL:AK078287 EMBL:AK087261 IPI:IPI00273914
IPI:IPI00458717 IPI:IPI00655015 IPI:IPI00655142 RefSeq:NP_766277.3
UniGene:Mm.86382 PDB:3TBK PDBsum:3TBK ProteinModelPortal:Q6Q899
SMR:Q6Q899 STRING:Q6Q899 PhosphoSite:Q6Q899 PaxDb:Q6Q899
PRIDE:Q6Q899 DNASU:230073 Ensembl:ENSMUST00000037907 GeneID:230073
KEGG:mmu:230073 UCSC:uc008shh.1 UCSC:uc012dbu.1 InParanoid:A2AP28
EvolutionaryTrace:Q6Q899 NextBio:379764 Bgee:Q6Q899
CleanEx:MM_DDX58 Genevestigator:Q6Q899
GermOnline:ENSMUSG00000040296 Uniprot:Q6Q899
Length = 926
Score = 133 (51.9 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 51/179 (28%), Positives = 83/179 (46%)
Query: 396 HGIRPA-YEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDH 454
H +R A ++ E +L + RF K E++ KV S ++PKL + VL +
Sbjct: 573 HDVREAAFDETERELTR----RFEEKLEELEKV------SRDPSNENPKLRDLYLVLQEE 622
Query: 455 FKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIXXXXXXXXXXXXXXXXX 512
+ K P+ ++ I+F R V + + L +K
Sbjct: 623 YHLK-PE-TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQK 680
Query: 513 XXLEKFRAGG-YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
LE FRA G N+++ATS+ +EG+DI E +LVI ++ + ++MIQ GR GR D +
Sbjct: 681 CVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRARDSK 738
Score = 122 (48.0 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 37/155 (23%), Positives = 68/155 (43%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFP-- 152
+EA+ ++ P R+YQ + A NT++ PTG GKT ++ ++ + + FP
Sbjct: 231 SEASSNNLHSPLKP-RNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCG 289
Query: 153 -DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRAS-FWKTKRVFFVTP 210
GK+VF A P+ QQ ++G S + + + +TP
Sbjct: 290 QKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTP 349
Query: 211 QVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAY 244
Q+L ++ +G + ++ DE H + N+ Y
Sbjct: 350 QILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPY 384
>TAIR|locus:2097705 [details] [associations]
symbol:DCL2 "dicer-like 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010216 "maintenance of DNA methylation"
evidence=IMP] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA;IMP] [GO:0051607 "defense response to
virus" evidence=RCA;IMP] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=IGI;RCA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010050 "vegetative phase change" evidence=RCA] [GO:0010073
"meristem maintenance" evidence=RCA] [GO:0016569 "covalent
chromatin modification" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0051607 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0010267 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC012328 GO:GO:0010216 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ479970
EMBL:DQ479971 IPI:IPI00530074 IPI:IPI00852241 RefSeq:NP_001078101.1
RefSeq:NP_001189798.1 RefSeq:NP_566199.4 UniGene:At.43488
ProteinModelPortal:Q3EBC8 SMR:Q3EBC8 IntAct:Q3EBC8 STRING:Q3EBC8
PaxDb:Q3EBC8 PRIDE:Q3EBC8 EnsemblPlants:AT3G03300.1
EnsemblPlants:AT3G03300.3 GeneID:821300 KEGG:ath:AT3G03300
TAIR:At3g03300 HOGENOM:HOG000006099 InParanoid:Q3EBC8 OMA:TAIVLES
PhylomeDB:Q3EBC8 ProtClustDB:CLSN2694055 Genevestigator:Q3EBC8
Uniprot:Q3EBC8
Length = 1388
Score = 145 (56.1 bits), Expect = 6.8e-12, Sum P(3) = 6.8e-12
Identities = 47/149 (31%), Positives = 69/149 (46%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKI-VFAAPSRPLVM 167
R YQ + A+ NT+V L TG GKTLIA +++ ++ F P VF P LV
Sbjct: 25 RSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYLFRKPSPCFCVFLVPQVVLVT 84
Query: 168 QQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQSGT 221
QQ EA H + + W DM + S WK + V +TP +L ++
Sbjct: 85 QQAEALKMHTDLKVGMYWG-DMGVDFWDS---STWKQEVDKYEVLVMTPAILLDALRHSF 140
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRE 250
+ + L++DE H A G + Y +RE
Sbjct: 141 LSLSMIKVLIVDECHHAGGKHPYACIMRE 169
Score = 123 (48.4 bits), Expect = 6.8e-12, Sum P(3) = 6.8e-12
Identities = 31/91 (34%), Positives = 52/91 (57%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHI 574
+E FR G N+IVATSI EEGLD+ +LVI FD + IQ GR ++ + +
Sbjct: 441 VEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGRARMQNSDYLMMV 500
Query: 575 FKPEVQFVELSIEQYVSRGKKVKD---DHAI 602
++ + + +Y+S GK++++ DH++
Sbjct: 501 ESGDL-LTQSRLMKYLSGGKRMREESLDHSL 530
Score = 40 (19.1 bits), Expect = 6.8e-12, Sum P(3) = 6.8e-12
Identities = 29/124 (23%), Positives = 54/124 (43%)
Query: 707 HGTKKVTDSELST--RTLGTQENHSMPQSCCKSPAAHAYLFGSDFISVDALGKVLIISVP 764
H ++ V++ E S+ T G + + S P+ + L G+ F+ +V+ S+
Sbjct: 1251 HISRTVSEFEQSSLQSTFGWESDISFPKVL--GDVIES-LAGAIFVDSGYNKEVVFASIK 1307
Query: 765 ALPFKELSHSKKKRAPD---TLLLNHWKQDSSPLKTSDKNYDELTVQSKAVEELTTSQAA 821
L ++ K P T L W+ + S K ++D TV+ KA +E++ + A
Sbjct: 1308 PLLGCMITPETVKLHPVRELTELCQKWQFELSKAK----DFDSFTVEVKA-KEMSFAHTA 1362
Query: 822 CIKD 825
D
Sbjct: 1363 KASD 1366
>UNIPROTKB|A2A376 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0043330 "response to
exogenous dsRNA" evidence=IEA] [GO:0045087 "innate immune response"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00382 SMART:SM00490
GO:GO:0005524 GO:GO:0003727 GO:GO:0045087 GO:GO:0009615
EMBL:AL161783 GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
GO:GO:0032728 EMBL:AL353671 HGNC:HGNC:19102 HOGENOM:HOG000230911
HOVERGEN:HBG052325 ChiTaRS:DDX58 IPI:IPI01009182 SMR:A2A376
Ensembl:ENST00000379868 Uniprot:A2A376
Length = 722
Score = 133 (51.9 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 43/176 (24%), Positives = 77/176 (43%)
Query: 77 EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFS-NTLVALPTGLG 135
+E E + E+ C +E + T +Y P R+YQ + A+ NT++ PTG G
Sbjct: 11 QEDPECQNLSENSCP---PSEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCG 66
Query: 136 KTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLVMQQIEACHNIV---GIPQEWTIDMTG 189
KT ++ ++ + + FP G K+VF A P+ QQ G T
Sbjct: 67 KTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA 126
Query: 190 QISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAY 244
+ P ++ + + +TPQ+L +++ GT + ++ DE H + + Y
Sbjct: 127 ENVPVEQIV--ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY 180
Score = 118 (46.6 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 55/244 (22%), Positives = 108/244 (44%)
Query: 387 YHIRRLLSSHG-IRPAYEMLEEKLKQGSFARFMSKNEDIRK---VKLLMQQSISHGA--Q 440
Y+ ++S H ++ A + L++ A F +D+ + KL +S+S +
Sbjct: 345 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNE 404
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIXXX 498
+PKL + +L + + +P+ + I+F R V + N + L +K
Sbjct: 405 NPKLEDLCFILQEEYHL-NPE-TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 462
Query: 499 XXXXXXXXXXXXXXXXLEKFRAGG-YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
L+ F+A G +N+++ATS+ +EG+DI + +LVI ++ + ++MI
Sbjct: 463 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 522
Query: 558 QRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTP-----IFKEKLT 612
Q GR GR + + +E EQ +K+ +D + +F+EK+
Sbjct: 523 QTRGR-GRARGSKC-FLLTSNAGVIEK--EQINMYKEKMMNDSILRLQTWDEAVFREKIL 578
Query: 613 AAET 616
+T
Sbjct: 579 HIQT 582
>UNIPROTKB|Q5E9G8 [details] [associations]
symbol:LGP2 "Putative uncharacterized protein LGP2"
species:9913 "Bos taurus" [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IEA] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA] [GO:0045824 "negative
regulation of innate immune response" evidence=IEA] [GO:0039536
"negative regulation of RIG-I signaling pathway" evidence=IEA]
[GO:0039534 "negative regulation of MDA-5 signaling pathway"
evidence=IEA] [GO:0032481 "positive regulation of type I interferon
production" evidence=IEA] [GO:0032480 "negative regulation of type
I interferon production" evidence=IEA] [GO:0009615 "response to
virus" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727 "single-stranded
RNA binding" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0051607
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 GeneTree:ENSGT00510000046789 GO:GO:1900245
GO:GO:1900246 CTD:79132 HOVERGEN:HBG106019 KO:K12649 OMA:ELRPYQW
GO:GO:0032481 EMBL:DAAA02049179 EMBL:DAAA02049177 EMBL:DAAA02049178
EMBL:BT020952 IPI:IPI00693785 RefSeq:NP_001015545.1
UniGene:Bt.27564 Ensembl:ENSBTAT00000065738 GeneID:508378
KEGG:bta:508378 NextBio:20868490 Uniprot:Q5E9G8
Length = 680
Score = 135 (52.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 51/187 (27%), Positives = 84/187 (44%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVARRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTID-MTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E + + + WTI ++G + P RA F R + T ++L+K + S
Sbjct: 63 HCEEFSRM--LERRWTITTLSGDMGP--RAGFGHVARRHDLLICTAELLQKALASPEEEE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSKQ-QTI 274
+ LV+DE H + Y + + + + +Q ++L LTA+PG+ T+
Sbjct: 119 HVELNAFSLLVVDECHHTHKDTVYNIILSQYLELKLQRTRPLPQVLGLTASPGTGGVSTL 178
Query: 275 QHIIDNL 281
+ ID++
Sbjct: 179 EGAIDHV 185
Score = 114 (45.2 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 36/132 (27%), Positives = 60/132 (45%)
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM------NALATIGDLVKA 491
G ++PKL + +L F++ P R IIF+ R S ++ L T+ +
Sbjct: 345 GPENPKLEVLEAILQRQFRS--PDSPRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIRPQV 402
Query: 492 -TEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
T ++KFR G N++VATS+ EEGLDI + ++V+ +
Sbjct: 403 LTGAGNNSQKTQMIQMTQRDQQEVIQKFRTGTLNLLVATSVAEEGLDIPQCNVVVRYGLL 462
Query: 551 VSPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 463 TNEISMVQARGR 474
>UNIPROTKB|Q96C10 [details] [associations]
symbol:DHX58 "Probable ATP-dependent RNA helicase DHX58"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019048 "virus-host interaction"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0039536 "negative regulation of RIG-I signaling
pathway" evidence=IMP;IDA] [GO:0003725 "double-stranded RNA
binding" evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0045088 "regulation of innate immune response"
evidence=IDA] [GO:0039534 "negative regulation of MDA-5 signaling
pathway" evidence=IMP] [GO:0032480 "negative regulation of type I
interferon production" evidence=IDA] [GO:0045824 "negative
regulation of innate immune response" evidence=IDA] [GO:0032481
"positive regulation of type I interferon production" evidence=ISS]
[GO:0009615 "response to virus" evidence=ISS] [GO:1900245 "positive
regulation of MDA-5 signaling pathway" evidence=ISS] [GO:1900246
"positive regulation of RIG-I signaling pathway" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0019048 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0051607
GO:GO:0009615 GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534
GO:GO:0039536 GO:GO:0045824 eggNOG:COG1111 GO:GO:1900245
GO:GO:1900246 EMBL:AK021416 EMBL:BC014949 IPI:IPI00303746
RefSeq:NP_077024.2 UniGene:Hs.55918 PDB:2RQA PDB:2W4R PDB:3EQT
PDBsum:2RQA PDBsum:2W4R PDBsum:3EQT ProteinModelPortal:Q96C10
SMR:Q96C10 IntAct:Q96C10 MINT:MINT-1460040 STRING:Q96C10
PhosphoSite:Q96C10 DMDM:50401123 PaxDb:Q96C10 PRIDE:Q96C10
DNASU:79132 Ensembl:ENST00000251642 Ensembl:ENST00000563880
GeneID:79132 KEGG:hsa:79132 UCSC:uc002hyw.3 CTD:79132
GeneCards:GC17M040255 HGNC:HGNC:29517 HPA:HPA018670 HPA:HPA019570
MIM:608588 neXtProt:NX_Q96C10 PharmGKB:PA162383566
HOGENOM:HOG000230992 HOVERGEN:HBG106019 InParanoid:Q96C10 KO:K12649
OMA:ELRPYQW OrthoDB:EOG44QT15 ChiTaRS:DHX58
EvolutionaryTrace:Q96C10 GenomeRNAi:79132 NextBio:67993
ArrayExpress:Q96C10 Bgee:Q96C10 CleanEx:HS_DHX58
Genevestigator:Q96C10 GermOnline:ENSG00000108771 GO:GO:0032481
Uniprot:Q96C10
Length = 678
Score = 132 (51.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 36/133 (27%), Positives = 63/133 (47%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM------NALATIGDLV 489
+HG ++PKL + ++L F + + R IIF+ R S ++ L T+ +
Sbjct: 343 THGPENPKLEMLEKILQRQFSSSNSP--RGIIFTRTRQSAHSLLLWLQQQQGLQTVD--I 398
Query: 490 KATEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA 549
+A I ++KF+ G N++VATS+ EEGLDI ++V+ +
Sbjct: 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGL 458
Query: 550 NVSPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 459 LTNEISMVQARGR 471
Score = 117 (46.2 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 45/174 (25%), Positives = 75/174 (43%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTID-MTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E + + WT+ ++G + P RA F R + T ++L+ + S
Sbjct: 63 HGEEFRRM--LDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS 269
+ +V+DE H + Y + + + + +Q ++L LTA+PG+
Sbjct: 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172
>UNIPROTKB|B3KWW1 [details] [associations]
symbol:DDX58 "cDNA FLJ44001 fis, clone TESTI4022716, highly
similar to Probable ATP-dependent RNA helicase DDX58 (EC 3.6.1.-)"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AL161783 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL353671 UniGene:Hs.190622
HGNC:HGNC:19102 HOVERGEN:HBG052325 ChiTaRS:DDX58 IPI:IPI01009182
EMBL:AK125989 SMR:B3KWW1 STRING:B3KWW1 Ensembl:ENST00000542096
UCSC:uc010mji.3 Uniprot:B3KWW1
Length = 854
Score = 133 (51.9 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 43/176 (24%), Positives = 77/176 (43%)
Query: 77 EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFS-NTLVALPTGLG 135
+E E + E+ C +E + T +Y P R+YQ + A+ NT++ PTG G
Sbjct: 143 QEDPECQNLSENSCP---PSEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCG 198
Query: 136 KTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLVMQQIEACHNIV---GIPQEWTIDMTG 189
KT ++ ++ + + FP G K+VF A P+ QQ G T
Sbjct: 199 KTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA 258
Query: 190 QISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAY 244
+ P ++ + + +TPQ+L +++ GT + ++ DE H + + Y
Sbjct: 259 ENVPVEQIV--ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY 312
Score = 118 (46.6 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 55/244 (22%), Positives = 108/244 (44%)
Query: 387 YHIRRLLSSHG-IRPAYEMLEEKLKQGSFARFMSKNEDIRK---VKLLMQQSISHGA--Q 440
Y+ ++S H ++ A + L++ A F +D+ + KL +S+S +
Sbjct: 477 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNE 536
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIXXX 498
+PKL + +L + + +P+ + I+F R V + N + L +K
Sbjct: 537 NPKLEDLCFILQEEYHL-NPE-TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 594
Query: 499 XXXXXXXXXXXXXXXXLEKFRAGG-YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
L+ F+A G +N+++ATS+ +EG+DI + +LVI ++ + ++MI
Sbjct: 595 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 654
Query: 558 QRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTP-----IFKEKLT 612
Q GR GR + + +E EQ +K+ +D + +F+EK+
Sbjct: 655 QTRGR-GRARGSKC-FLLTSNAGVIEK--EQINMYKEKMMNDSILRLQTWDEAVFREKIL 710
Query: 613 AAET 616
+T
Sbjct: 711 HIQT 714
>UNIPROTKB|O95786 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0043330 "response
to exogenous dsRNA" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IDA;IMP] [GO:0002230 "positive regulation of
defense response to virus by host" evidence=IMP] [GO:0032727
"positive regulation of interferon-alpha production"
evidence=IDA;IMP] [GO:0045087 "innate immune response"
evidence=IMP;TAS] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0039528 "cytoplasmic
pattern recognition receptor signaling pathway in response to
virus" evidence=TAS] [GO:0003725 "double-stranded RNA binding"
evidence=IMP;IDA;TAS] [GO:0030334 "regulation of cell migration"
evidence=IDA] [GO:0005923 "tight junction" evidence=IDA]
[GO:0032587 "ruffle membrane" evidence=IDA] [GO:0015629 "actin
cytoskeleton" evidence=IDA] [GO:0039529 "RIG-I signaling pathway"
evidence=IMP] [GO:0003727 "single-stranded RNA binding"
evidence=IMP] [GO:0009615 "response to virus" evidence=TAS]
[GO:0034344 "regulation of type III interferon production"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0032480
"negative regulation of type I interferon production" evidence=TAS]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0051091
"positive regulation of sequence-specific DNA binding transcription
factor activity" evidence=IC] [GO:0042993 "positive regulation of
transcription factor import into nucleus" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0009597 "detection of virus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0051091 GO:GO:0046872 GO:GO:0015629
GO:GO:0008270 GO:GO:0003727 GO:GO:0045944 GO:GO:0045087
GO:GO:0002230 GO:GO:0030334 GO:GO:0005923 EMBL:AL161783
EMBL:CH471071 GO:GO:0003690 Reactome:REACT_107772 GO:GO:0032587
GO:GO:0003725 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0032480
GO:GO:0008026 GO:GO:0042993 GO:GO:0043330 GO:GO:0032727
eggNOG:COG1111 GO:GO:0032728 EMBL:AF038963 EMBL:AL353671
EMBL:BC132786 EMBL:BC136610 EMBL:BX647917 EMBL:AL137608
IPI:IPI00295503 IPI:IPI00654731 PIR:T46312 RefSeq:NP_055129.2
UniGene:Hs.190622 PDB:2LWD PDB:2LWE PDB:2QFB PDB:2QFD PDB:2RMJ
PDB:2YKG PDB:3LRN PDB:3LRR PDB:3NCU PDB:3OG8 PDB:3TMI PDB:4AY2
PDBsum:2LWD PDBsum:2LWE PDBsum:2QFB PDBsum:2QFD PDBsum:2RMJ
PDBsum:2YKG PDBsum:3LRN PDBsum:3LRR PDBsum:3NCU PDBsum:3OG8
PDBsum:3TMI PDBsum:4AY2 ProteinModelPortal:O95786 SMR:O95786
DIP:DIP-35444N IntAct:O95786 MINT:MINT-2799116 STRING:O95786
PhosphoSite:O95786 PaxDb:O95786 PRIDE:O95786
Ensembl:ENST00000379882 Ensembl:ENST00000379883 GeneID:23586
KEGG:hsa:23586 UCSC:uc003zra.3 UCSC:uc010mjk.1 CTD:23586
GeneCards:GC09M032447 HGNC:HGNC:19102 HPA:CAB012643 MIM:609631
neXtProt:NX_O95786 PharmGKB:PA134994272 HOGENOM:HOG000230911
HOVERGEN:HBG052325 InParanoid:O95786 KO:K12646 OMA:KCKAFAC
OrthoDB:EOG4SQWW0 PhylomeDB:O95786 ChiTaRS:DDX58
EvolutionaryTrace:O95786 GenomeRNAi:23586 NextBio:46208
ArrayExpress:O95786 Bgee:O95786 CleanEx:HS_DDX58
Genevestigator:O95786 GermOnline:ENSG00000107201 GO:GO:0009597
GO:GO:0034344 GO:GO:0039529 Uniprot:O95786
Length = 925
Score = 133 (51.9 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 43/176 (24%), Positives = 77/176 (43%)
Query: 77 EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFS-NTLVALPTGLG 135
+E E + E+ C +E + T +Y P R+YQ + A+ NT++ PTG G
Sbjct: 214 QEDPECQNLSENSCP---PSEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCG 269
Query: 136 KTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLVMQQIEACHNIV---GIPQEWTIDMTG 189
KT ++ ++ + + FP G K+VF A P+ QQ G T
Sbjct: 270 KTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA 329
Query: 190 QISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAY 244
+ P ++ + + +TPQ+L +++ GT + ++ DE H + + Y
Sbjct: 330 ENVPVEQIV--ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY 383
Score = 118 (46.6 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 55/244 (22%), Positives = 108/244 (44%)
Query: 387 YHIRRLLSSHG-IRPAYEMLEEKLKQGSFARFMSKNEDIRK---VKLLMQQSISHGA--Q 440
Y+ ++S H ++ A + L++ A F +D+ + KL +S+S +
Sbjct: 548 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNE 607
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIXXX 498
+PKL + +L + + +P+ + I+F R V + N + L +K
Sbjct: 608 NPKLEDLCFILQEEYHL-NPE-TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
Query: 499 XXXXXXXXXXXXXXXXLEKFRAGG-YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
L+ F+A G +N+++ATS+ +EG+DI + +LVI ++ + ++MI
Sbjct: 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
Query: 558 QRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTP-----IFKEKLT 612
Q GR GR + + +E EQ +K+ +D + +F+EK+
Sbjct: 726 QTRGR-GRARGSKC-FLLTSNAGVIEK--EQINMYKEKMMNDSILRLQTWDEAVFREKIL 781
Query: 613 AAET 616
+T
Sbjct: 782 HIQT 785
>UNIPROTKB|A4RHU9 [details] [associations]
symbol:DCL2 "Dicer-like protein 2" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS00690 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00490 SMART:SM00535 GO:GO:0005524
GO:GO:0046872 GO:GO:0051607 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 OrthoDB:EOG4JWZNK
RefSeq:XP_003715365.1 GeneID:2683150 KEGG:mgr:MGG_12357
Uniprot:A4RHU9
Length = 1485
Score = 134 (52.2 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 38/118 (32%), Positives = 57/118 (48%)
Query: 467 IFSNFRGSVRDIMNALATIGDLVKATEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVI 526
I S + DI NA +G +V + ++ LEKFR+G N++
Sbjct: 444 ILSQLLAIIPDI-NARYKVGCMVGTSRYMSRKMNIHEVLQQGDDLLA-LEKFRSGAINLL 501
Query: 527 VATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVEL 584
VATS+ EEG+D+ +LVICFD + IQR GR R + ++ H+ E V +
Sbjct: 502 VATSVLEEGIDVPVCNLVICFDMPANLKSFIQRRGRA-RMRESKL-HLMIEEDSLVSV 557
Score = 127 (49.8 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 40/145 (27%), Positives = 66/145 (45%)
Query: 105 PVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY-NFFRWFPDGKIVFAAPSR 163
P ++ R YQ + + ++ N +V++ TG GKT +A + I R P+ ++ F AP+
Sbjct: 60 PRSIIARAYQLEMFQASMQQNIIVSMDTGSGKTQVAVLRIRAELERTPPEKRVWFLAPTV 119
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQ--ISPTKRASFWKTK----RVFFVTPQVLEKDI 217
L QQ E + + + +I MTG + W RV T +L + +
Sbjct: 120 ALCAQQYEVIRSQIKVAN--SIVMTGDDNVDSWSDVQTWDAVLANVRVVVCTYMILFEAL 177
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNY 242
M + LV+DEAH TG +
Sbjct: 178 SHAFVTMDSISLLVMDEAHNCTGKF 202
Score = 41 (19.5 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 21/71 (29%), Positives = 26/71 (36%)
Query: 946 GKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTASAGGYSPTSPIAEETKTPLA--- 1002
G E + V SQ V SP L+ TA GG P + P +
Sbjct: 611 GHLEHFCRVVTRSQQYVDASPEY------LVTTKTTAFVGG-KPIPILGVTVLLPASLPP 663
Query: 1003 NLANSSCSRDW 1013
NL + SRDW
Sbjct: 664 NLRQAHSSRDW 674
Score = 37 (18.1 bits), Expect = 9.4e-11, Sum P(3) = 9.4e-11
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 803 DELTVQSKAVEELTTSQAACIKDGALPISRFCRSDALPEKPLDGFEEIL 851
DE+ V + TT+ + D + FCR ++ +D E L
Sbjct: 588 DEMDVPP--LHSRTTAAKVTVDDAKGHLEHFCRVVTRSQQYVDASPEYL 634
>UNIPROTKB|F5H5W6 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
GO:GO:0005524 GO:GO:0003676 EMBL:AL161783 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL353671
HGNC:HGNC:19102 ChiTaRS:DDX58 IPI:IPI01012440
ProteinModelPortal:F5H5W6 SMR:F5H5W6 Ensembl:ENST00000545044
UCSC:uc011lnr.1 ArrayExpress:F5H5W6 Bgee:F5H5W6 Uniprot:F5H5W6
Length = 536
Score = 133 (51.9 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 43/176 (24%), Positives = 77/176 (43%)
Query: 77 EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFS-NTLVALPTGLG 135
+E E + E+ C +E + T +Y P R+YQ + A+ NT++ PTG G
Sbjct: 11 QEDPECQNLSENSCP---PSEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCG 66
Query: 136 KTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLVMQQIEACHNIV---GIPQEWTIDMTG 189
KT ++ ++ + + FP G K+VF A P+ QQ G T
Sbjct: 67 KTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA 126
Query: 190 QISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAY 244
+ P ++ + + +TPQ+L +++ GT + ++ DE H + + Y
Sbjct: 127 ENVPVEQIV--ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY 180
Score = 106 (42.4 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 42/181 (23%), Positives = 84/181 (46%)
Query: 387 YHIRRLLSSHG-IRPAYEMLEEKLKQGSFARFMSKNEDIRK---VKLLMQQSISHGA--Q 440
Y+ ++S H ++ A + L++ A F +D+ + KL +S+S +
Sbjct: 345 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNE 404
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIXXX 498
+PKL + +L + + +P+ + I+F R V + N + L +K
Sbjct: 405 NPKLEDLCFILQEEYHL-NPE-TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 462
Query: 499 XXXXXXXXXXXXXXXXLEKFRAGG-YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
L+ F+A G +N+++ATS+ +EG+DI + +LVI ++ + ++MI
Sbjct: 463 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 522
Query: 558 Q 558
Q
Sbjct: 523 Q 523
>DICTYBASE|DDB_G0280963 [details] [associations]
symbol:rrpC "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR007855 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF05183 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280963 GO:GO:0005524
GenomeReviews:CM000152_GR EMBL:AAFI02000040 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_640790.1
ProteinModelPortal:Q54UI6 STRING:Q54UI6 EnsemblProtists:DDB0216193
GeneID:8622843 KEGG:ddi:DDB_G0280963 InParanoid:Q54UI6 OMA:YELFNDY
Uniprot:Q54UI6
Length = 2285
Score = 132 (51.5 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 47/168 (27%), Positives = 76/168 (45%)
Query: 107 NVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPS 162
NV R YQ + NT++ LPTG GKTL++ + F + D +F +
Sbjct: 17 NVKPRQYQEDAFNQCISRNTILVLPTGTGKTLVSILTFLKMFEINEKKNNDKVALFLVNN 76
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQ-IS-PTKRASFWKTKRVFFVTPQVLEKDIQSG 220
L QQ E N+ + + ++G +S TK+ ++ + TPQ+L I
Sbjct: 77 ILLGKQQTETIKNLT---DKRVMVLSGDDLSFQTKKKNY----DIVVATPQILMNLINKN 129
Query: 221 TCLMKYLVCLVIDEAHRATG--NYAYCTAIRELMSVPVQLRILALTAT 266
+ ++ DE H ATG NY ++ + + P + RIL LTA+
Sbjct: 130 KIRIDNFHFIIFDEVHNATGLDNYCKIMSLVKNLDPPFRPRILGLTAS 177
Score = 107 (42.7 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 32/121 (26%), Positives = 56/121 (46%)
Query: 443 KLSKMLEVLVDHFKTKDPKHS-RVIIFSNFRGSVRDIMNALATIGDLVKATEFIXXXXXX 501
K +L++L K + I+F R + + ++N L + ++ K +
Sbjct: 374 KFKSLLKLLSIEIKENNINDKINCIVFVETRDTGKKLLNLLISEKEISKLNPKLIYGHNG 433
Query: 502 XXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMG 561
+++F+ G V+V+T++ EEG+DI E + VICFD S +IQR G
Sbjct: 434 RNGMKHSEQQQI-IQQFKEGVCQVLVSTNVLEEGIDIKECNSVICFDNLYSLKSLIQRRG 492
Query: 562 R 562
R
Sbjct: 493 R 493
Score = 62 (26.9 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 825 DGALPISRFCRSDALPEKPLDGFEEILDSPVLRRNQLREEDTTDETLDVNE-IKEPLSPD 883
+G +P + C L D + I D ++R + + E E VN I E S D
Sbjct: 1481 NGMVPNFKQCSGSDLDG---DRYFVIYDQTLIREDLITHEPYLGEEQTVNPLIGEEDSDD 1537
Query: 884 DEYHNDLRDSELSPRLTNLIKS 905
D+Y ND D++++ + KS
Sbjct: 1538 DQYEND--DNDITIPTSTTTKS 1557
>UNIPROTKB|F1NDV4 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0016925 "protein sumoylation" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR016024
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 GO:GO:0004386 GO:GO:0043021 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016925
GeneTree:ENSGT00510000046789 OMA:KCGQAWG EMBL:AADN02058700
EMBL:AADN02058701 EMBL:AADN02058702 IPI:IPI00579734
Ensembl:ENSGALT00000018067 Uniprot:F1NDV4
Length = 689
Score = 149 (57.5 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 74/297 (24%), Positives = 125/297 (42%)
Query: 418 MSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVR 476
+SK ++ K K L + + + KL K+ L++ F KT++P R IIF+ R S
Sbjct: 334 VSKQDETAKKKQLKELARKPEYDNEKLMKLRNTLMEEFTKTEEP---RGIIFTKTRQSAL 390
Query: 477 D----IMN--ALATIGDLVKATEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATS 530
IM+ +G +KA I ++KFR G N+++AT+
Sbjct: 391 ALYHWIMDNPKFEEVG--IKAHFLIGAGHNSETKPMTQNEQREVIDKFRGGSINLLIATT 448
Query: 531 IGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD--GRIPHIFKPEVQFVELSIEQ 588
+ EEGLDI E ++VI + + + M+Q GR + V+ +++I +
Sbjct: 449 VAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFR 508
Query: 589 YVSRGKKVKDDHAITTPIFKEKLTAAETD-LIAKYFHPTSDS--TWR--PSLIAFPHFQA 643
K ++ + + K+ + ++ K D T++ PSLI F
Sbjct: 509 ENMMYKAIRRVQEMPPEEYLNKIQDFQLQSIVEKQMKAKRDQRKTYKKNPSLITF----- 563
Query: 644 LPSRVHKVMHSFRTGMLIDMMQHL------QGLTFSRDDRTFVEDEVSSDKHLGLQT 694
L HK++ S +I+ M H+ Q L R++RT DKH QT
Sbjct: 564 LCKNCHKLICSGEDIQVIENMHHVSVKKDFQHLYHKRENRTL------QDKHADYQT 614
Score = 88 (36.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 50/224 (22%), Positives = 90/224 (40%)
Query: 117 ITKTALFS-NTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPSRPLVMQQIE 171
+ K AL N ++ LPTG GKT +A + + + GK++ PLV Q +
Sbjct: 1 VAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVNKVPLVEQHLR 60
Query: 172 ACHNIVGIPQEW--TIDMTGQISPTKRASFWKT-KR--VFFVTPQVLEKDIQSGT----- 221
N + W I ++G S K SF + KR V T Q+LE + + T
Sbjct: 61 KEFN--PFLKRWYQVIGLSGD-SELK-ISFPEVVKRYDVIICTAQILENSLLNATEEDES 116
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+ ++IDE H Y +R + ++ R A P Q I + +
Sbjct: 117 VRLSDFSLIIIDECHHTQKEGVYNNIMRRYLKEKIKNRKQAKENKPLIPQPQILGLTASP 176
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE 325
+ +++++ + N I + + + A ++ N++ E
Sbjct: 177 GVGGARSNSKAEEHILKICANLDACRI-MTVKEHASQLKNQVKE 219
>ZFIN|ZDB-GENE-081104-438 [details] [associations]
symbol:ifih1 "interferon induced with helicase C
domain 1" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-081104-438
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 Gene3D:1.10.533.10
InterPro:IPR011029 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00510000046789 EMBL:AL954669 EMBL:CABZ01064081
EMBL:CABZ01064082 EMBL:CABZ01064083 IPI:IPI00492508
Ensembl:ENSDART00000003913 Uniprot:F1R4B9
Length = 997
Score = 123 (48.4 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 57/243 (23%), Positives = 97/243 (39%)
Query: 16 DEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLGPKPQG 75
D D +A V++ ++S S S N ++ + S L GN QG
Sbjct: 211 DSSDAQAEVKDTGAVRRNSMSSPPPSFTPNSSLQSEDLDDSVDSSLLGVDAGN-----QG 265
Query: 76 TEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFS-NTLVALPTGL 134
E + +G +E D +++ + + +RDYQ + + AL N +V LPTG
Sbjct: 266 VEMYEDGEEKEEKDLKEDEDDDSSAS---KREIKLRDYQMEVARPALEEKNIIVCLPTGS 322
Query: 135 GKTLIAAVVIYNFF----RWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQ 190
GKT +A + R GK+V PLV Q +A + +++++
Sbjct: 323 GKTRVAVFITKEHLERKQRMGQKGKVVVLVNKVPLVEQHYKAEFGRF-LKHQYSVERVSG 381
Query: 191 ISPTKRA--SFWKTKRVFFVTPQVLEKDI-------QSGTCLMKYLVCLVIDEAHRATGN 241
S K + + + T Q+LE + + G L ++ + +VIDE H
Sbjct: 382 ASQLKISFPQIIEKNDIIICTAQILENSLAKAKNGDEDGIELSQFTL-MVIDECHHTKKG 440
Query: 242 YAY 244
Y
Sbjct: 441 GVY 443
Score = 117 (46.2 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 36/133 (27%), Positives = 66/133 (49%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT---IGDL-VKATEFI 495
++ L+++ +++ F T++ +R IIF+ R S + + ++ V+A+ I
Sbjct: 661 ENNNLAQLKTIILKEFSTREK--ARGIIFTQTRLSAIALCQWIEENPKFDEVGVRASYLI 718
Query: 496 XXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
L++FR G N+++AT++ EEGLDI E ++VI + + +
Sbjct: 719 GGGDQSVVKPMTAAEQKDVLKRFRTGEINLLIATTVAEEGLDIAECNVVIRYCLVTNEVA 778
Query: 556 MIQRMGRTGRKHD 568
MIQ GR GR D
Sbjct: 779 MIQARGR-GRAED 790
Score = 49 (22.3 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 254 VPVQLRILALTATPG-----SKQQTIQHIID---NLYISTLEYRNESDQDVSS 298
VP+ +IL LTA+PG S+Q +HI+ NL T++ + +++ +
Sbjct: 468 VPIP-QILGLTASPGVGGAVSQQMAEEHILQICANLDAFTIKTKTFEEEEAKT 519
>UNIPROTKB|G3MWK8 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271
Pfam:PF04851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00510000046789 EMBL:DAAA02049179
EMBL:DAAA02049177 EMBL:DAAA02049178 Ensembl:ENSBTAT00000065634
Uniprot:G3MWK8
Length = 480
Score = 135 (52.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 51/187 (27%), Positives = 84/187 (44%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVARRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTID-MTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E + + + WTI ++G + P RA F R + T ++L+K + S
Sbjct: 63 HCEEFSRM--LERRWTITTLSGDMGP--RAGFGHVARRHDLLICTAELLQKALASPEEEE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSKQ-QTI 274
+ LV+DE H + Y + + + + +Q ++L LTA+PG+ T+
Sbjct: 119 HVELNAFSLLVVDECHHTHKDTVYNIILSQYLELKLQRTRPLPQVLGLTASPGTGGVSTL 178
Query: 275 QHIIDNL 281
+ ID++
Sbjct: 179 EGAIDHV 185
Score = 96 (38.9 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 32/115 (27%), Positives = 52/115 (45%)
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM------NALATIGDLVKA 491
G ++PKL + +L F++ P R IIF+ R S ++ L T+ +
Sbjct: 345 GPENPKLEVLEAILQRQFRS--PDSPRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIRPQV 402
Query: 492 -TEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
T ++KFR G N++VATS+ EEGLDI + ++V+
Sbjct: 403 LTGAGNNSQKTQMIQMTQRDQQEVIQKFRTGTLNLLVATSVAEEGLDIPQCNVVV 457
>ASPGD|ASPL0000041548 [details] [associations]
symbol:dclB species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001650
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
GO:GO:0005524 GO:GO:0046872 EMBL:BN001306 GO:GO:0051607
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AACD01000052
ProteinModelPortal:P0C5H7 HOGENOM:HOG000048683 OrthoDB:EOG4JWZNK
Uniprot:P0C5H7
Length = 1429
Score = 151 (58.2 bits), Expect = 7.5e-10, Sum P(3) = 7.5e-10
Identities = 61/228 (26%), Positives = 99/228 (43%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV-FAAPSRPLVMQQ 169
R YQ + + +L N +V + TG GKT IA + I + DGK++ F AP+ PL +QQ
Sbjct: 15 RSYQLEMFEASLKGNIIVVMGTGSGKTQIALLRIIHELE-NSDGKLIWFLAPTVPLCLQQ 73
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQSGTCLMK 225
+ + T+ + ++ + W +V TP VL + G +
Sbjct: 74 HRVISQHIPAVKSRTLLGSDKVELWTEQAVWDAVLEGLQVIVSTPAVLHDAMTHGFVRIS 133
Query: 226 YLVCLVIDEAHRATGNYA--------YCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
L L+ DEAH + Y A++E V RIL LTA+ GS ++ +Q I
Sbjct: 134 RLGLLIFDEAHHCIRKHPTNMIMRNFYHPALQEYGPGAVP-RILGLTASAGSSREGLQTI 192
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE 325
NL S Q++ Y H ++ + + ++ N +WE
Sbjct: 193 EMNLN-SVCTTPQAHRQELLEYTHMPELRRV---LYTPLMKENASLWE 236
Score = 97 (39.2 bits), Expect = 7.5e-10, Sum P(3) = 7.5e-10
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH 567
L+ FR G N+IVAT + +EG+D+ +VIC++ IQR GR R++
Sbjct: 408 LDDFRYGRKNLIVATDVLKEGIDVSACSVVICYNIPKGFESFIQRRGRARRQN 460
Score = 47 (21.6 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 877 KEPLSPDDEYHN-DLRDSELSPRLTNLIKSGVVPESPINENG 917
K P+ PD + H+ D +D +SP+ LI S ++ IN +G
Sbjct: 311 KSPV-PDIDVHSTDPKDFPVSPKFEALI-SFLMSTEDINFSG 350
Score = 40 (19.1 bits), Expect = 7.5e-10, Sum P(3) = 7.5e-10
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 782 TLLLNHWKQDSSPLKTSDKNYDELTVQSKAVEEL 815
TLL+ S P TS ++Y L AV ++
Sbjct: 1071 TLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDM 1104
Score = 39 (18.8 bits), Expect = 9.5e-10, Sum P(3) = 9.5e-10
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 1002 ANLANSSCSRDWRLSSGDKSENVEPARKFKRLRKVRDCEQNKNSENMK 1049
A NS+ S LS+ D ++ +KF+++ + E + +E ++
Sbjct: 456 ARRQNSTYSM--MLSTEDDGSTLDKWQKFEKIMEEACLEDRRRTEELR 501
>UNIPROTKB|A7LFZ6 [details] [associations]
symbol:DCL4 "Endoribonuclease Dicer homolog 4"
species:39947 "Oryza sativa Japonica Group" [GO:0009944 "polarity
specification of adaxial/abaxial axis" evidence=IMP] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IDA] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IMP] [GO:0048608 "reproductive structure
development" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010492 GO:GO:0010267 EMBL:AL606607 EMBL:AP008210
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009944
GO:GO:0008026 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 HOGENOM:HOG000083706
EMBL:EU009924 EMBL:AB353922 EMBL:AK066586 RefSeq:NP_001053278.1
UniGene:Os.27988 GeneID:4336362 KEGG:osa:4336362 Gramene:A7LFZ6
ProtClustDB:CLSN2694920 GO:GO:0048608 Uniprot:A7LFZ6
Length = 1657
Score = 138 (53.6 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 47/170 (27%), Positives = 78/170 (45%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKI-VFAAPSRPLVM 167
R YQ + K A+ N +V L TG GKT IA ++IY P ++ +F AP+ PLV
Sbjct: 31 RKYQLDLCKRAVEENIIVYLGTGCGKTHIAVLLIYELGHLIRKPSREVCIFLAPTIPLVR 90
Query: 168 QQIEACHNIVGIPQEWTIDMT-GQISPTKRASFWKTK----RVFFVTPQVLEKDIQSGTC 222
QQ ++ ++ + G ++ W+ V +TPQ+L + ++
Sbjct: 91 QQAV----VIASSTDFKVQCYYGNGKNSRDHQEWENDMREFEVLVMTPQILLQSLRHCFI 146
Query: 223 LMKYLVCLVIDEAHRATGN--YAYCTAIRELM---SVPVQLRILALTATP 267
M + L++DE H A + Y ++E SV R+ +TA+P
Sbjct: 147 KMNSIALLILDECHHAQPQKRHPYAQIMKEFYNSNSVEKFPRVFGMTASP 196
Score = 110 (43.8 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHI 574
+++F +G N++VATS+GEEGLDI LV+ FD + IQ GR R + +
Sbjct: 470 VQRFSSGEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRA-RMTKSKYVVL 528
Query: 575 FKPEVQFVELSIEQYVSRGKKVKDD 599
+ E Q E + Y++ G+ + ++
Sbjct: 529 LERENQSHEKLLNGYIA-GESIMNE 552
Score = 39 (18.8 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 21/94 (22%), Positives = 41/94 (43%)
Query: 795 LKTSDKNYDELTVQSKAVEELTTSQ-AACIKDGALPISRFCRSDALPEKPLDGFEEILDS 853
L S+K+ E KA+ ++ S A + D ++ + + KP+ F + +
Sbjct: 1325 LSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTN 1384
Query: 854 PVLRRNQLREEDTTDETLDVNEIKEPLSPDDEYH 887
P+ +LRE ++ + +P+ D EYH
Sbjct: 1385 PM---RELRELCQC-HGFELG-LPKPMKADGEYH 1413
>UNIPROTKB|E2RMV6 [details] [associations]
symbol:DDX58 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00510000046789 OMA:KCKAFAC EMBL:AAEX03007933
Ensembl:ENSCAFT00000002841 Uniprot:E2RMV6
Length = 929
Score = 120 (47.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 36/140 (25%), Positives = 61/140 (43%)
Query: 111 RDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R+YQ + A NT++ PTG GKT +A ++ + + FP G KIVF A P+
Sbjct: 243 RNYQLELALPAKEGKNTIICAPTGCGKTFVALLICEHHLKKFPQGQKGKIVFFAIQIPVY 302
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRAS-FWKTKRVFFVTPQVLEKDIQSGTC-LM 224
QQ ++G S + + +TPQ+L +++GT +
Sbjct: 303 EQQNSVFSKYFERLGYKVAGISGATSENISVEQIVENNDIIVLTPQILVNCLRNGTIPSL 362
Query: 225 KYLVCLVIDEAHRATGNYAY 244
++ DE H + ++ Y
Sbjct: 363 SVFTLMIFDECHNTSKHHPY 382
Score = 112 (44.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 40/162 (24%), Positives = 77/162 (47%)
Query: 407 EKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVI 466
++++Q RF K +++ + + +S+ ++PKL + +L + + +P+ SR I
Sbjct: 584 DEIEQHLTYRFEEKLQELESISM----DLSN--ENPKLKDLSFILQEEYHL-NPE-SRTI 635
Query: 467 IFSNFRGSVRDIMNALATIGDL--VKATEFIXXXXXXXXXXXXXXXXXXXLEKFRAGG-Y 523
+F R V + + +L +K L+ FR G
Sbjct: 636 LFVKTRALVDALKKWIEENSELSFLKPGILTGRGKTNHNTGMTLPAQKCALDAFRTDGDK 695
Query: 524 NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
+++ATS+ +EG+DI + +LVI ++ + +RMIQ GR GR
Sbjct: 696 KILIATSVADEGIDIAQCNLVILYEYVGNVIRMIQTRGR-GR 736
>ZFIN|ZDB-GENE-120612-3 [details] [associations]
symbol:dhx58 "DEXH (Asp-Glu-X-His) box polypeptide
58" species:7955 "Danio rerio" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-120612-3 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:79132 KO:K12649 EMBL:JF970230 RefSeq:NP_001244086.1
UniGene:Dr.93597 GeneID:100148871 KEGG:dre:100148871 Uniprot:G3GMG3
Length = 679
Score = 170 (64.9 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 116/485 (23%), Positives = 195/485 (40%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ + + AL N+++ LPTG GKT A V + K+ LV Q
Sbjct: 5 LRPYQEEVVQAALRGENSIIWLPTGGGKTRAAVYVAEKHLETKANAKVAVLVNKVHLVDQ 64
Query: 169 QI--EACHNIVGIPQEWTID-MTGQISPTKRASFWKTKRV---FFVTPQVLEKDI----Q 218
E H + ++ I ++G S ++ F + RV T Q+LE + +
Sbjct: 65 HYMKEFGHYL---RHKYRIKAISGDSS--EKDFFGRLVRVSDLVICTAQILENALNNMDE 119
Query: 219 SGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPG----- 268
+ LVIDE H Y + + V+ +IL LTA+PG
Sbjct: 120 DKHVEITDFTLLVIDECHHTNKESVYNKIMWRYVEKKVRKEGRLPQILGLTASPGTGGNK 179
Query: 269 SKQQTIQHIID---NLYISTLEYRNESDQDVSSYVHNRKIELIEVE------MGQEAVEI 319
S + ++H++ NL + +N + + ++V K E VE G +
Sbjct: 180 SLDKAVEHVLQICANLDSKIVSTKNYTPM-LQNFVPKPKKEYDIVERRDKDPFGDHLKSM 238
Query: 320 NNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAY 379
I E + P SR + L ++Y+ V+L + K + Q + Y
Sbjct: 239 MLMIHEFMPPTVSR--GLRELGTQEYEA-DVVELEKAGVKVNNRL---IAQCAL-HLRKY 291
Query: 380 FGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGA 439
AL+ IR + + + Y KL G+ F+ D ++L S +
Sbjct: 292 NDALLINDTIRMVDAFRVLEEFYNSRSSKLLDGTDI-FLQGLFDENSLELKHLASDAR-Y 349
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIXX 497
++PKL+++ L++ F+ + SR IIFS R + + + T +L V T I
Sbjct: 350 ENPKLAQLQSRLLEEFQDTN---SRGIIFSKTRRGTHCLNDWVKTNRELQRVNITAGILT 406
Query: 498 XXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
+ FR G N++++TS+ EEGLDI E +LV+ + + +
Sbjct: 407 GAGNGANNMTQTEQKSVISHFRQGYLNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQ 466
Query: 558 QRMGR 562
Q GR
Sbjct: 467 QASGR 471
>MGI|MGI:1918836 [details] [associations]
symbol:Ifih1 "interferon induced with helicase C domain 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016925 "protein
sumoylation" evidence=ISO] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=ISO] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0042981
"regulation of apoptotic process" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=ISO] [GO:0045087
"innate immune response" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR001315 InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619
Pfam:PF04851 Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194
SMART:SM00490 MGI:MGI:1918836 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0042981 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0051607
GO:GO:0009615 GO:GO:0003725 GO:GO:0004386 Gene3D:1.10.533.10
InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0043021 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016925 GO:GO:0032727
eggNOG:COG1111 GeneTree:ENSGT00510000046789 GO:GO:0032728
HOVERGEN:HBG106019 CTD:64135 KO:K12647 OMA:KCGQAWG
OrthoDB:EOG48KR9P EMBL:AY075132 EMBL:AF374384 EMBL:AK018602
EMBL:AK037057 EMBL:AK040519 EMBL:AK153018 EMBL:AL929246
EMBL:BC004031 EMBL:BC019605 EMBL:BC025508 EMBL:BC080200
IPI:IPI00172284 IPI:IPI00555048 RefSeq:NP_001157949.1
RefSeq:NP_082111.2 UniGene:Mm.136224 PDB:3TS9 PDBsum:3TS9
ProteinModelPortal:Q8R5F7 SMR:Q8R5F7 STRING:Q8R5F7
PhosphoSite:Q8R5F7 PaxDb:Q8R5F7 PRIDE:Q8R5F7
Ensembl:ENSMUST00000028259 Ensembl:ENSMUST00000112459 GeneID:71586
KEGG:mmu:71586 UCSC:uc012bvy.1 InParanoid:A2AUY7 NextBio:334053
Bgee:Q8R5F7 CleanEx:MM_IFIH1 Genevestigator:Q8R5F7
GermOnline:ENSMUSG00000026896 Uniprot:Q8R5F7
Length = 1025
Score = 142 (55.0 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 44/141 (31%), Positives = 71/141 (50%)
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV----RDIM-NA- 481
K+L + + + ++ KL K+ +++ F T+ + SR IIF+ R S + IM NA
Sbjct: 685 KMLKKLAENPKYENEKLIKLRNTILEQF-TRSEESSRGIIFTKTRQSTYALSQWIMENAK 743
Query: 482 LATIGDLVKATEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEV 541
A +G VKA I + KFR G N+++AT++ EEGLDI E
Sbjct: 744 FAEVG--VKAHHLIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKEC 801
Query: 542 DLVICFDANVSPLRMIQRMGR 562
++VI + + + M+Q GR
Sbjct: 802 NIVIRYGLVTNEIAMVQARGR 822
Score = 83 (34.3 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 68/317 (21%), Positives = 124/317 (39%)
Query: 16 DEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLGPKPQG 75
DE E +D + + S+ T + S A S C +L N+G + G
Sbjct: 229 DESSLETEAWNVDDILPEASCTDSSVTTESDTSLAEGSVS-CFDESLGHN-SNMG-RDSG 285
Query: 76 TEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFS-NTLVALPTGL 134
T GS DES+ +Q + + P + +R YQ + + AL N ++ LPTG
Sbjct: 286 TM----GSDSDESV--IQTKRVSPE----P-ELQLRPYQMEVAQPALDGKNIIICLPTGS 334
Query: 135 GKTLIAAVVIYNFF----RWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQ 190
GKT +A + + + GK++ L Q N ++W + G
Sbjct: 335 GKTRVAVYITKDHLDKKKQASESGKVIVLVNKVMLAEQLFRKEFN--PYLKKW-YRIIGL 391
Query: 191 ISPTK-RASF---WKTKRVFFVTPQVLEK---DIQSGT---CLMKYLVCLVIDEAHRATG 240
T+ + SF K+ V T Q+LE +++SG + ++IDE H
Sbjct: 392 SGDTQLKISFPEVVKSYDVIISTAQILENSLLNLESGDDDGVQLSDFSLIIIDECHHTNK 451
Query: 241 NYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYV 300
Y +R + ++ L P I + + + + ++E+++ + +
Sbjct: 452 EAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQILGLTASPGVGAAKKQSEAEKHILNIC 511
Query: 301 HNRK---IELIEVEMGQ 314
N I+ ++ +GQ
Sbjct: 512 ANLDAFTIKTVKENLGQ 528
Score = 43 (20.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHR--ATGNYAYCTAIRELMSVPVQ 257
++L D+ TC K L L +++ +R A GN + +REL+ VQ
Sbjct: 128 KLLINDVLD-TCFEKGL--LTVEDRNRISAAGNSGNESGVRELLRRIVQ 173
>UNIPROTKB|I3LGW3 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00510000046789 OMA:KCKAFAC
EMBL:FP340205 Ensembl:ENSSSCT00000026775 Uniprot:I3LGW3
Length = 960
Score = 119 (46.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 43/174 (24%), Positives = 74/174 (42%)
Query: 77 EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFS-NTLVALPTGLG 135
+E E + ++ C +EA T+ P+ P R YQ + A NT++ PTG G
Sbjct: 215 KEEPENQNLSQNSCS---SSEAPHTYS-PLK-P-RKYQLELALPAQNGKNTIICAPTGCG 268
Query: 136 KTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQIS 192
KT ++ ++ + + FP G K+VF A P+ QQ ++G S
Sbjct: 269 KTFVSLLICEHHLKKFPQGRKGKVVFFAIQLPVYEQQKSVFSKHFERLGYKVAGISGATS 328
Query: 193 PTKRAS-FWKTKRVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAY 244
T + + +TPQ+L + +GT + ++ DE H + + Y
Sbjct: 329 DTVCVEQIVENNDIIILTPQILVNCLTNGTIPSLSVFTLMIFDECHNTSKQHPY 382
Score = 105 (42.0 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 43/191 (22%), Positives = 87/191 (45%)
Query: 384 ITLYHIRRLLSSHG-IRPAYEMLEEKLKQGSFARFMSKNEDI-----RKVKLLMQQSISH 437
+ +Y+ +++ H ++ A + L++ + A F +D+ K++ L SI
Sbjct: 549 LRIYNDALIINEHARMKDALDYLKDFFRNIRAAGFDEIEQDLTQRFEEKLQELESISIDP 608
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFI 495
++PKL + +L + + +P+ +R I+F R V + + L +K +
Sbjct: 609 SNENPKLRDLCFILQEEYHL-NPE-TRTILFVKTRALVDALKKWIKENPKLSFLKPSILT 666
Query: 496 XXXXXXXXXXXXXXXXXXXLEKFRAGGYN-VIVATSIGEEGLDIMEVDLVICFDANVSPL 554
L+ FR N +++ TS+ +EG+DI + +LVI ++ + +
Sbjct: 667 GRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADEGIDIAQCNLVILYEYVGNVI 726
Query: 555 RMIQRMGRTGR 565
+MIQ GR GR
Sbjct: 727 KMIQTRGR-GR 736
>UNIPROTKB|E2RNK0 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045087 "innate immune response"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA] [GO:0016925 "protein sumoylation" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0042981
"regulation of apoptotic process" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001315 InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619 Pfam:PF04851
Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0042981 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0009615
GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
GO:GO:0043021 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016925 GeneTree:ENSGT00510000046789 CTD:64135 KO:K12647
OMA:KCGQAWG EMBL:AAEX03017717 RefSeq:XP_545493.2
Ensembl:ENSCAFT00000016597 GeneID:488371 KEGG:cfa:488371
Uniprot:E2RNK0
Length = 1029
Score = 135 (52.6 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 44/148 (29%), Positives = 72/148 (48%)
Query: 422 EDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMN 480
E+ R +K L Q H ++ KL K+ +++ F +T++P +R IIF+ R S +
Sbjct: 685 ENKRMLKKLAQNP-KH--ENEKLIKLRNTIMEQFTRTEEP--ARGIIFTKTRQSAFALSQ 739
Query: 481 AL------ATIGDLVKATEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEE 534
+ A +G VKA I + KFR G N+++AT++ EE
Sbjct: 740 WITENKKFAEVG--VKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEE 797
Query: 535 GLDIMEVDLVICFDANVSPLRMIQRMGR 562
GLDI E ++VI + + + M+Q GR
Sbjct: 798 GLDIKECNIVIRYGLVTNEIAMVQARGR 825
Score = 95 (38.5 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 54/210 (25%), Positives = 84/210 (40%)
Query: 60 STLDKFFGNLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITK 119
S LD+ G+ G++ GS DE +V AE A P + +R YQ + +
Sbjct: 269 SCLDESLGH--NSNMGSDSGTMGSDSDEE--NV---AERASP--EP-ELHLRPYQMEVAQ 318
Query: 120 TALFS-NTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPSRPLVMQQIEACH 174
AL N ++ LPTG GKT +A + + + GK++ PLV Q
Sbjct: 319 PALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVPLVEQLFR--E 376
Query: 175 NIVGIPQEW--TIDMTGQISPTKRASF---WKTKRVFFVTPQVLEKDI-------QSGTC 222
++W TI ++G + SF KT V T Q+LE + G
Sbjct: 377 EFEPFLKKWYHTIGLSGDTQ--LKISFPEIVKTYDVIISTAQILENSLLNSEKGEDDGVQ 434
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELM 252
+ + ++IDE H Y +R +
Sbjct: 435 FSDFTL-IIIDECHHTNKEAVYNNIMRRYL 463
Score = 44 (20.5 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 597 KDDHAITTPIFKEKLTAAETDLIAKYF 623
K H TP+FKE E + K F
Sbjct: 928 KMHHVNMTPVFKELYIVRENKALRKKF 954
Score = 41 (19.5 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 254 VPVQLRILALTATPG---SKQQTI--QHII 278
+P+ +IL LTA+PG +K+Q QHI+
Sbjct: 480 IPLP-QILGLTASPGVRGAKRQAEAQQHIL 508
>DICTYBASE|DDB_G0291249 [details] [associations]
symbol:rrpB "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0291249
GO:GO:0005524 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 KO:K11699
PANTHER:PTHR23079 RefSeq:XP_635263.1 ProteinModelPortal:Q54EH7
EnsemblProtists:DDB0220017 GeneID:8628208 KEGG:ddi:DDB_G0291249
InParanoid:Q54EH7 OMA:NINERTN ProtClustDB:CLSZ2429575
Uniprot:Q54EH7
Length = 2403
Score = 203 (76.5 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 119/516 (23%), Positives = 212/516 (41%)
Query: 106 VNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF------RWFPDGKIV-- 157
V + RDYQ + NTL+ LPTG+GKTL++ + + F D K +
Sbjct: 269 VEIIPRDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQDNSCGDSKRIAL 328
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR----VFFVTPQVL 213
F PLV QQ A I + + G+I+ ++ +F ++K V V V
Sbjct: 329 FLVDRVPLVTQQAGAIEAITNLK---VCKLYGEINDSRTRAFVRSKEYDVLVSTVGSLVN 385
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR--ILALTATPGSKQ 271
+++ L Y + DE H ATG + + + + + R IL LTA+ S
Sbjct: 386 LLEVRHLNILDFYFI--TFDEVHHATGEHDFNKVVDYIRKTDLNFRPRILGLTASLVSIG 443
Query: 272 QTIQHIIDNLYISTLEYRNESD--QDVSSYVHNRKIELIEVEM------GQEAVEINNRI 323
+ I+ I +E R S + S ++ + EL + E+ GQE++ I I
Sbjct: 444 NSTIDIVQRS-IKDMEERMLSRVFKPTSLLTNSTQSEL-QPELVSFKTSGQESL-IETSI 500
Query: 324 WEVIRPYTSRLSAIGLLQNRDYQTL--SPVDL--LNSRDKFRQAPPPNLPQIKFGEVEAY 379
E + + L + D + +P L L DK+ + Q++ +E Y
Sbjct: 501 CEFLVSNSKELQIFLNYSDVDLDGVRGNPSFLKALERLDKYSK-------QLESIYIE-Y 552
Query: 380 FGALITLYHIRRLLSSHG---IRPAYEMLEEKLKQGS--FARFMSKNEDIRKVKLLMQQS 434
LI LY + +LS+ G + ++L + Q + + + + I + +
Sbjct: 553 TKVLIKLYELLSVLSTEGPKQVLTGLDLLMQSTNQENELYNKLLELRYYISGQYEDRESN 612
Query: 435 ISHGA-QSPKLSKMLEVLVDHFKTKD-PKHSRVIIFSNFRGSVRDIMNALAT--IGDLVK 490
G+ + KL LE + + K R+++F R ++ + L + +
Sbjct: 613 FEKGSTRYRKLISSLEYAISDASDGELQKDLRILVFVETRSGASNLTSMLKKEPFQEYLH 672
Query: 491 ATEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
+ + KFR G +IV T++ EEG+D+ + ++VIC+D
Sbjct: 673 TKRLVGHNGDDGMDSEKQQSI---IRKFRDGKCRLIVTTNVLEEGIDVQDCNIVICYDGI 729
Query: 551 VSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSI 586
+S +IQR GR K++ + I+ + L+I
Sbjct: 730 LSLKSLIQRRGRARSKNESKFIIIYNDDKDLKILNI 765
Score = 40 (19.1 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 1031 KRLRKVRDCEQNKNSENMKENAVAPVVNLARRFLGMSPIQNKHGRGRKK 1079
K + K E + N+ ++ +A R+ + N + +G K+
Sbjct: 2164 KYIDKCNPNELTNTTSNLTIGNWVKLIEIASRYFSVDNNNNNNNKGHKR 2212
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 902 LIKSGVVPESPINENGASNNKGRN 925
++++ ++P N+N +NN N
Sbjct: 2115 IVENSMIPSIFNNKNHNNNNNNNN 2138
>UNIPROTKB|Q9GLV6 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9823 "Sus scrofa" [GO:0032587 "ruffle membrane"
evidence=ISS] [GO:0015629 "actin cytoskeleton" evidence=ISS]
[GO:0005923 "tight junction" evidence=ISS] [GO:0003727
"single-stranded RNA binding" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] [GO:0030334 "regulation
of cell migration" evidence=ISS] [GO:0039529 "RIG-I signaling
pathway" evidence=ISS] [GO:0045087 "innate immune response"
evidence=ISS] [GO:0032728 "positive regulation of interferon-beta
production" evidence=ISS] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=ISS] [GO:0002230 "positive
regulation of defense response to virus by host" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR021673
Pfam:PF00270 Pfam:PF00271 Pfam:PF11648 PROSITE:PS50209
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0015629 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 GO:GO:0002230 GO:GO:0030334 GO:GO:0005923
GO:GO:0032587 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0032727 GO:GO:0032728
HOVERGEN:HBG052325 GO:GO:0039529 EMBL:AF181119 UniGene:Ssc.15885
ProteinModelPortal:Q9GLV6 SMR:Q9GLV6 Uniprot:Q9GLV6
Length = 940
Score = 114 (45.2 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 35/140 (25%), Positives = 59/140 (42%)
Query: 111 RDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLV 166
R YQ + A NT++ PTG GKT ++ ++ + + FP GK+VF A P+
Sbjct: 242 RKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKFPRGRKGKVVFFAIQLPVY 301
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRAS-FWKTKRVFFVTPQVLEKDIQSGTC-LM 224
QQ ++G S T + + +TPQ+L + +GT +
Sbjct: 302 EQQKSVFSKHFERLGYKVAGISGATSDTVCVEQIVENSDIIILTPQILVNCLTNGTIPSL 361
Query: 225 KYLVCLVIDEAHRATGNYAY 244
++ DE H + + Y
Sbjct: 362 SVFTLMIFDECHNTSKQHPY 381
Score = 105 (42.0 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 43/191 (22%), Positives = 87/191 (45%)
Query: 384 ITLYHIRRLLSSHG-IRPAYEMLEEKLKQGSFARFMSKNEDI-----RKVKLLMQQSISH 437
+ +Y+ +++ H ++ A + L++ + A F +D+ K++ L SI
Sbjct: 548 LRIYNDALIINEHARMKDALDYLKDFFRNIRAAGFDEIEQDLTQRFEEKLQELESISIDP 607
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFI 495
++PKL + +L + + +P+ +R I+F R V + + L +K +
Sbjct: 608 SNENPKLRDLCFILQEEYHL-NPE-TRTILFVKTRALVDALKKWIKENPKLSFLKPSILT 665
Query: 496 XXXXXXXXXXXXXXXXXXXLEKFRAGGYN-VIVATSIGEEGLDIMEVDLVICFDANVSPL 554
L+ FR N +++ TS+ +EG+DI + +LVI ++ + +
Sbjct: 666 GRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADEGIDIAQCNLVILYEYVGNVI 725
Query: 555 RMIQRMGRTGR 565
+MIQ GR GR
Sbjct: 726 KMIQTRGR-GR 735
>UNIPROTKB|Q9BYX4 [details] [associations]
symbol:IFIH1 "Interferon-induced helicase C
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0042981 "regulation of
apoptotic process" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0019048
"virus-host interaction" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0016925 "protein
sumoylation" evidence=IDA] [GO:0039528 "cytoplasmic pattern
recognition receptor signaling pathway in response to virus"
evidence=TAS] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IMP;TAS] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=IMP;TAS] [GO:0003725
"double-stranded RNA binding" evidence=IDA;TAS] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0034344 "regulation
of type III interferon production" evidence=TAS] [GO:0009615
"response to virus" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0032480 "negative regulation of type I interferon production"
evidence=TAS] [GO:0009597 "detection of virus" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS50209
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 Reactome:REACT_6900 GO:GO:0019048 GO:GO:0042981
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 Reactome:REACT_107772 GO:GO:0003725 GO:GO:0004386
Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0043021
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0032480
GO:GO:0016925 GO:GO:0032727 eggNOG:COG1111 GO:GO:0032728
GO:GO:0009597 GO:GO:0034344 HOGENOM:HOG000230992 HOVERGEN:HBG106019
EMBL:AF095844 EMBL:AY017378 EMBL:BC046208 EMBL:BC078180
EMBL:BC111750 EMBL:AK056293 IPI:IPI00005577 IPI:IPI00556546
RefSeq:NP_071451.2 UniGene:Hs.163173 PDB:2RQB PDB:3B6E PDB:3GA3
PDB:4GL2 PDBsum:2RQB PDBsum:3B6E PDBsum:3GA3 PDBsum:4GL2
ProteinModelPortal:Q9BYX4 SMR:Q9BYX4 DIP:DIP-42607N IntAct:Q9BYX4
MINT:MINT-3381993 STRING:Q9BYX4 PhosphoSite:Q9BYX4 DMDM:134047802
PaxDb:Q9BYX4 PRIDE:Q9BYX4 Ensembl:ENST00000263642
Ensembl:ENST00000421365 Ensembl:ENST00000543192 GeneID:64135
KEGG:hsa:64135 UCSC:uc002uce.3 UCSC:uc002ucf.3 CTD:64135
GeneCards:GC02M163123 HGNC:HGNC:18873 HPA:HPA002656 MIM:606951
MIM:610155 neXtProt:NX_Q9BYX4 PharmGKB:PA134889215
InParanoid:Q9BYX4 KO:K12647 OMA:KCGQAWG OrthoDB:EOG48KR9P
PhylomeDB:Q9BYX4 ChiTaRS:IFIH1 EvolutionaryTrace:Q9BYX4
GenomeRNAi:64135 NextBio:66034 ArrayExpress:Q9BYX4 Bgee:Q9BYX4
CleanEx:HS_IFIH1 Genevestigator:Q9BYX4 GermOnline:ENSG00000115267
GO:GO:0039528 Uniprot:Q9BYX4
Length = 1025
Score = 132 (51.5 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 43/164 (26%), Positives = 77/164 (46%)
Query: 405 LEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSR 464
L++ LK RF+ K+L + + + ++ KL+K+ +++ + T+ + +R
Sbjct: 663 LKKPLKLDETDRFLM-TLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQY-TRTEESAR 720
Query: 465 VIIFSNFRGSVRDIMNAL------ATIGDLVKATEFIXXXXXXXXXXXXXXXXXXXLEKF 518
IIF+ R S + + A +G VKA I + KF
Sbjct: 721 GIIFTKTRQSAYALSQWITENEKFAEVG--VKAHHLIGAGHSSEFKPMTQNEQKEVISKF 778
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
R G N+++AT++ EEGLDI E ++VI + + + M+Q GR
Sbjct: 779 RTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR 822
Score = 87 (35.7 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 51/233 (21%), Positives = 99/233 (42%)
Query: 37 STSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLGPKPQGTEEFNEGSSFDESLCHVQIDA 96
S S+ + ++ S+++ + S LD+ G+ G++ GS DE + A
Sbjct: 245 SESSFADSSVVSESDTSLAEGSVSCLDESLGH--NSNMGSDSGTMGSDSDEE----NVAA 298
Query: 97 EAAKTWIYPVNVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFF----RWF 151
A+ P + +R YQ + + AL N ++ LPTG GKT +A + + +
Sbjct: 299 RASPE---P-ELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKAS 354
Query: 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEW--TIDMTGQISPTKRASF---WKTKRVF 206
GK++ ++ L+++Q+ ++W I ++G + SF K+ +
Sbjct: 355 EPGKVIVLV-NKVLLVEQLFR-KEFQPFLKKWYRVIGLSGDTQ--LKISFPEVVKSCDII 410
Query: 207 FVTPQVLEKDI-------QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM 252
T Q+LE + +G L + + ++IDE H Y +R +
Sbjct: 411 ISTAQILENSLLNLENGEDAGVQLSDFSL-IIIDECHHTNKEAVYNNIMRHYL 462
>RGD|1560496 [details] [associations]
symbol:Ifih1 "interferon induced with helicase C domain 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA;ISO]
[GO:0009615 "response to virus" evidence=IEA;ISO] [GO:0016925
"protein sumoylation" evidence=IEA;ISO] [GO:0032727 "positive
regulation of interferon-alpha production" evidence=ISO]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045087 "innate immune response"
evidence=IEA;ISO] InterPro:IPR001315 InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619
Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 RGD:1560496
GO:GO:0005524 GO:GO:0042981 GO:GO:0003677 GO:GO:0005622
GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH473949
GeneTree:ENSGT00510000046789 CTD:64135 KO:K12647 OMA:KCGQAWG
RefSeq:NP_001102669.1 UniGene:Rn.151974 Ensembl:ENSRNOT00000009620
GeneID:499801 KEGG:rno:499801 NextBio:704049 Uniprot:G3V6W5
Length = 1027
Score = 138 (53.6 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 42/141 (29%), Positives = 69/141 (48%)
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV----RDIMN--A 481
K+L + + + ++ KL K+ +++ F T+ + SR IIF+ R S + IM
Sbjct: 687 KMLKKLAENPKYENEKLIKLRNTILEQF-TRSEESSRGIIFTKTRQSTYALSQWIMENEK 745
Query: 482 LATIGDLVKATEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEV 541
A +G VKA I + KFR G N+++AT++ EEGLDI E
Sbjct: 746 FAEVG--VKAHHLIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKEC 803
Query: 542 DLVICFDANVSPLRMIQRMGR 562
++VI + + + M+Q GR
Sbjct: 804 NIVIRYGLVTNEIAMVQARGR 824
Score = 80 (33.2 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 52/231 (22%), Positives = 90/231 (38%)
Query: 38 TSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLGPKPQ-GTEEFNEGSSFDESLCHVQIDA 96
TS +F S + ++ + ++ F +LG G + GS DE +
Sbjct: 243 TSPEASFADSSVTTESDTSLAEGSVSCFDESLGHNSNMGRDSGTMGSDSDEDTI---MGT 299
Query: 97 EAAKTWIYPVNVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFF----RWF 151
+ A P + +R YQ + + AL N ++ LPTG GKT +A + + +
Sbjct: 300 KRASP--KP-ELQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQAC 356
Query: 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASF---WKTKRVFF 207
GK++ L Q N ++W + G T+ + SF K+ V
Sbjct: 357 ESGKVIVLVNKVMLAEQLFRKEFN--PFLKKW-YRIIGLSGDTQLKISFPEVVKSYDVII 413
Query: 208 VTPQVLEK---DIQSGT---CLMKYLVCLVIDEAHRATGNYAYCTAIRELM 252
T Q+LE +++SG + ++IDE H Y +R +
Sbjct: 414 STAQILENSLLNLESGEDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYL 464
Score = 41 (19.5 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHR--ATGNYAYCTAIRELMSVPVQ 257
++L D+ TC K LV +++ +R A GN + +REL+ VQ
Sbjct: 128 KLLINDVLD-TCSEKGLV--TVEDRNRISAAGNSGNESGVRELLRRIVQ 173
Score = 39 (18.8 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM------------SVP-VQL- 258
LE G L + + ++IDE H Y +R + + P + L
Sbjct: 426 LESGEDDGVQLSDFSL-IIIDECHHTNKEAVYNNIMRRYLKQKLKNHKLKKQNKPTIHLP 484
Query: 259 RILALTATPG---SKQQTI--QHIID 279
+IL LTA+PG +K+Q+ +HI++
Sbjct: 485 QILGLTASPGVGAAKKQSEAEKHILN 510
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 110 (43.8 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 34/108 (31%), Positives = 57/108 (52%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGR-IP 572
L KF+A ++++AT + GLDI VD+V+ FD I R+GRT R G+ I
Sbjct: 308 LNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAIT 367
Query: 573 HIFKPEVQFVELSIEQYVSRGKKV-----KDDHAITTPIFKEKLTAAE 615
+ + +V+ + IE + GKK+ +DD + + E++T A+
Sbjct: 368 FVTQYDVELFQ-RIEHLI--GKKLPVFPTQDDEVM---MLTERVTEAQ 409
Score = 98 (39.6 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 54/211 (25%), Positives = 87/211 (41%)
Query: 73 PQGTEEFNEGSSF-DESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALP 131
PQ E E +F D + V +A W P + + AI AL ++ L
Sbjct: 16 PQTAVEVEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIE----AIP-LALQGRDIIGLA 70
Query: 132 -TGLGKTLIAAVVIYNFFRWFPDGKIVFA-APSRPLVMQ---QIEACHNIVGIPQEWTID 186
TG GKT A+ I N P P+R L Q Q EA + +G+ + +
Sbjct: 71 ETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV--QCAVI 128
Query: 187 MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL-MKYLVCLVIDEAHRATGNYAYC 245
+ G S ++ + K + TP L +++ ++ L LV+DEA R N +
Sbjct: 129 VGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL-NMDFE 187
Query: 246 TAIRELMSV-PVQLRILALTATPGSKQQTIQ 275
T + +++ V P + +AT K Q +Q
Sbjct: 188 TEVDKILKVIPRDRKTFLFSATMTKKVQKLQ 218
>UNIPROTKB|Q8LMR2 [details] [associations]
symbol:DCL1 "Endoribonuclease Dicer homolog 1"
species:39947 "Oryza sativa Japonica Group" [GO:0007275
"multicellular organismal development" evidence=IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
Pfam:PF00035 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 Gene3D:3.30.160.20
EMBL:DP000009 EMBL:AP008209 GO:GO:0003725 GO:GO:0090305
GO:GO:0004386 SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000140 EMBL:AC105363 RefSeq:NP_001048796.2
UniGene:Os.13488 HSSP:P66666 ProteinModelPortal:Q8LMR2 PRIDE:Q8LMR2
EnsemblPlants:LOC_Os03g02970.1 GeneID:4331440
KEGG:dosa:Os03t0121800-00 KEGG:dosa:Os03t0121901-00
KEGG:osa:4331440 Gramene:Q8LMR2 eggNOG:COG1111 HOGENOM:HOG000239675
KO:K11592 OMA:ITHASRP GO:GO:0004525 GO:GO:0035196
Gene3D:1.10.1520.10 SUPFAM:SSF69065 Uniprot:Q8LMR2
Length = 1883
Score = 115 (45.5 bits), Expect = 9.4e-08, Sum P(3) = 9.4e-08
Identities = 38/135 (28%), Positives = 64/135 (47%)
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKA 491
+++ G +P++ ++++L+ + T+D R IIF + + LA + L ++
Sbjct: 616 AVADGKVTPRVQALIKILLKYQHTED---FRAIIFVERVVTALVLPKVLAELPSLSFIRC 672
Query: 492 TEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
I + KFR G ++VATS+ EEGLDI + ++VI FD
Sbjct: 673 ASLIGHNNNQEMRACQMQDT---ISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK 729
Query: 552 SPLRMIQRMGRTGRK 566
+ L IQ GR RK
Sbjct: 730 TVLAYIQSRGRA-RK 743
Score = 87 (35.7 bits), Expect = 9.4e-08, Sum P(3) = 9.4e-08
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF-RWFPDGK---IVFAAPSRPLV 166
R YQ + + A NT+ L TG GKTLIA ++I + + + K VF P PLV
Sbjct: 268 RQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAVFLVPKVPLV 327
Query: 167 MQ 168
Q
Sbjct: 328 YQ 329
Score = 70 (29.7 bits), Expect = 9.4e-08, Sum P(3) = 9.4e-08
Identities = 39/170 (22%), Positives = 73/170 (42%)
Query: 204 RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLR--I 260
+V +T Q+L ++ M + L++DE H A + Y + E + P + R +
Sbjct: 329 QVLVMTAQILLNILRHSIIKMDAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPAV 388
Query: 261 LALTATPGS-KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEI 319
+TA+P + K T Q ++ I ++ D V + +++E V M E V
Sbjct: 389 FGMTASPVNLKGVTSQ---EDCAIKIRNLESKLDSVVCTIKDRKELEK-HVPMPLEVVVQ 444
Query: 320 NNR---IW---EVIRPYTSRLSAIGLLQNR--DYQTLSPVDLLNSRDKFR 361
++ +W E I+ S + L ++ +Q + D SRD+ R
Sbjct: 445 YDKAATLWSLHEQIKQMESTVEEAALSSSKRTKWQFMGARDA-GSRDELR 493
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 116 (45.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGR-IP 572
L+ F+AG +++VAT + GLDI VD+V+ +D V I R+GRT R G+ I
Sbjct: 364 LDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSIS 423
Query: 573 HIFKPEVQFVELSIEQYVSRGKKV 596
+ + +++ + L IE+ + GKK+
Sbjct: 424 LVSQYDLELI-LRIEEVL--GKKL 444
Score = 92 (37.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 60/210 (28%), Positives = 89/210 (42%)
Query: 77 EEFNEGSSFDESLCHVQIDAE---AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALP-T 132
E NE SF ES + + E A K Y P++ AI AL + ++ L T
Sbjct: 72 ENTNEDESF-ESFSELNLVPELIQACKNLNYSKPTPIQSK--AIPP-ALEGHDIIGLAQT 127
Query: 133 GLGKTLIAAVVIYNFFRWFPDGKIVFA---APSRPLVMQQIEACHNIVGIPQEWTIDMTG 189
G GKT A+ I N R + D + +A AP+R L Q E ++ + + + G
Sbjct: 128 GSGKTAAFAIPILN--RLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVG 185
Query: 190 QISPTKRA-SFWKTKRVFFVTPQVLEKDIQS--GTCLMKYLVCLVIDEAHRATGNYAYCT 246
++ +A + + TP L +++ G L K L LV+DEA R
Sbjct: 186 GMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRK-LKFLVMDEADRLLDMEFGPV 244
Query: 247 AIRELMSVPVQLRILAL-TATPGSKQQTIQ 275
R L +P Q R L +AT SK +Q
Sbjct: 245 LDRILKIIPTQERTTYLFSATMTSKIDKLQ 274
>UNIPROTKB|D4AC08 [details] [associations]
symbol:Ifih1 "Protein Ifih1" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0042981
"regulation of apoptotic process" evidence=IEA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 RGD:1560496 GO:GO:0005524 GO:GO:0042981 GO:GO:0003677
GO:GO:0005622 GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 IPI:IPI00568713
Ensembl:ENSRNOT00000040263 ArrayExpress:D4AC08 Uniprot:D4AC08
Length = 978
Score = 138 (53.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 42/141 (29%), Positives = 69/141 (48%)
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV----RDIMN--A 481
K+L + + + ++ KL K+ +++ F T+ + SR IIF+ R S + IM
Sbjct: 638 KMLKKLAENPKYENEKLIKLRNTILEQF-TRSEESSRGIIFTKTRQSTYALSQWIMENEK 696
Query: 482 LATIGDLVKATEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEV 541
A +G VKA I + KFR G N+++AT++ EEGLDI E
Sbjct: 697 FAEVG--VKAHHLIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKEC 754
Query: 542 DLVICFDANVSPLRMIQRMGR 562
++VI + + + M+Q GR
Sbjct: 755 NIVIRYGLVTNEIAMVQARGR 775
Score = 76 (31.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 38/158 (24%), Positives = 64/158 (40%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPSRP 164
+R YQ + + AL N ++ LPTG GKT +A + + + GK++
Sbjct: 261 LRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQACESGKVIVLVNKVM 320
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASF---WKTKRVFFVTPQVLEK---DI 217
L Q N ++W + G T+ + SF K+ V T Q+LE ++
Sbjct: 321 LAEQLFRKEFN--PFLKKW-YRIIGLSGDTQLKISFPEVVKSYDVIISTAQILENSLLNL 377
Query: 218 QSGT---CLMKYLVCLVIDEAHRATGNYAYCTAIRELM 252
+SG + ++IDE H Y +R +
Sbjct: 378 ESGEDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYL 415
Score = 44 (20.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHR--ATGNYAYCTAIRELMSVPVQLRILALTATPG 268
++L D+ TC K LV +++ +R A GN + +REL+ VQ T
Sbjct: 128 KLLINDVLD-TCSEKGLV--TVEDRNRISAAGNSGNESGVRELLRRIVQKENWFSTFLDV 184
Query: 269 SKQQTIQHIIDNLY-ISTLEYRNESDQDVS 297
+Q ++ L +S E ESD ++
Sbjct: 185 LRQTGNDALVQELTGVSCPEESTESDTSLA 214
Score = 39 (18.8 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM------------SVP-VQL- 258
LE G L + + ++IDE H Y +R + + P + L
Sbjct: 377 LESGEDDGVQLSDFSL-IIIDECHHTNKEAVYNNIMRRYLKQKLKNHKLKKQNKPTIHLP 435
Query: 259 RILALTATPG---SKQQTI--QHIID 279
+IL LTA+PG +K+Q+ +HI++
Sbjct: 436 QILGLTASPGVGAAKKQSEAEKHILN 461
>UNIPROTKB|D4A8D9 [details] [associations]
symbol:Ddx58 "Protein Ddx58" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR007087
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00028
PROSITE:PS51194 SMART:SM00490 RGD:1309460 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 IPI:IPI00952196
Ensembl:ENSRNOT00000065299 ArrayExpress:D4A8D9 Uniprot:D4A8D9
Length = 704
Score = 109 (43.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 39/170 (22%), Positives = 72/170 (42%)
Query: 111 RDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R+YQ + A NT++ PTG GKT ++ ++ + + FP G K+VF A P+
Sbjct: 200 RNYQLELALPAKKGKNTVICAPTGCGKTFVSLLICEHHLKNFPHGQKGKVVFFANQIPVY 259
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRAS-FWKTKRVFFVTPQVLEKDIQSGTC-LM 224
QQ ++G + + + +TPQ+L + +G +
Sbjct: 260 EQQATVFSRYFERFGYNVAGISGATADNVSVQHIIENNDIVILTPQILVNSLNNGAIPSL 319
Query: 225 KYLVCLVIDEAHRATGNYAYCTAI-----RELMSVPVQL-RILALTATPG 268
++ DE H + ++ Y + +L P L +++ LTA+ G
Sbjct: 320 SVFTLMIFDECHNTSKHHPYNQIMFRYLDHKLGGSPDPLPQVIGLTASVG 369
Score = 101 (40.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 515 LEKFRAGG-YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
LE FRA N+++ATS+ +E +DI + +LVI ++ + + MIQ GR GR D +
Sbjct: 635 LEAFRANADNNILIATSVADERIDIAQCNLVILYEYVGNVINMIQTRGR-GRARDSK 690
>UNIPROTKB|F1MKU1 [details] [associations]
symbol:DDX58 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0042993 "positive regulation of transcription
factor import into nucleus" evidence=IEA] [GO:0042802 "identical
protein binding" evidence=IEA] [GO:0039529 "RIG-I signaling
pathway" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0032727 "positive
regulation of interferon-alpha production" evidence=IEA]
[GO:0032587 "ruffle membrane" evidence=IEA] [GO:0030334 "regulation
of cell migration" evidence=IEA] [GO:0015629 "actin cytoskeleton"
evidence=IEA] [GO:0009597 "detection of virus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005923 "tight
junction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0002230 "positive
regulation of defense response to virus by host" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0015629 GO:GO:0008270 GO:GO:0003727 GO:GO:0045944
GO:GO:0045087 GO:GO:0002230 GO:GO:0030334 GO:GO:0005923
GO:GO:0003690 GO:GO:0032587 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0042993
GO:GO:0043330 GO:GO:0032727 GeneTree:ENSGT00510000046789
GO:GO:0032728 OMA:KCKAFAC GO:GO:0009597 GO:GO:0039529
EMBL:DAAA02021991 IPI:IPI00716102 Ensembl:ENSBTAT00000061377
Uniprot:F1MKU1
Length = 942
Score = 113 (44.8 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 33/140 (23%), Positives = 59/140 (42%)
Query: 111 RDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R+YQ + A NT++ PTG GKT ++ ++ + + FP G K+V A PL
Sbjct: 242 RNYQLELALPAQKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGRKGKVVVFAVQVPLY 301
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRAS-FWKTKRVFFVTPQVLEKDIQSGTC-LM 224
QQ ++G+ + + + +TPQ+L ++ GT +
Sbjct: 302 EQQKSVFSEYFERFGYKVSGISGETADNISVEQIVENNDIIILTPQILVNSLKDGTIPSL 361
Query: 225 KYLVCLVIDEAHRATGNYAY 244
++ DE H ++ Y
Sbjct: 362 SIFTLMIFDECHNTNKHHPY 381
Score = 99 (39.9 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 50/225 (22%), Positives = 94/225 (41%)
Query: 398 IRPAYEMLEEKLKQGSFARFMSKNEDIRK---VKLLMQQSISHGA--QSPKLSKMLEVLV 452
++ A L+ K A F + +D+ + KLL + IS ++ KL + +L
Sbjct: 563 MKDALNYLKNFFKNVRAAGFDAIEQDLTQRFEEKLLELEGISMDPSNENAKLKDLCFILQ 622
Query: 453 DHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIXXXXXXXXXXXXXXX 510
+ + +P+ +R I+F R + + N + L +K
Sbjct: 623 EEYHL-NPE-TRTILFVKTRALFQALKNWIEENPKLSFLKPGILTGRGRTNQTMGMTLPA 680
Query: 511 XXXXLEKFRAG-GYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDG 569
L+ FR +++ATS+ +EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 681 QKCALDAFRTNRDSKILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS 739
Query: 570 RIPHIFKPEVQFVE---LSIEQYVSRGKKVKDDHAITTPIFKEKL 611
+ + +E L+I Q + + +FKEK+
Sbjct: 740 KC-FLLTSNADVIEKEKLNICQEKMMNESISRLQGWNEAVFKEKI 783
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 110 (43.8 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 34/108 (31%), Positives = 57/108 (52%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGR-IP 572
L KF+A ++++AT + GLDI VD+V+ FD I R+GRT R G+ I
Sbjct: 332 LNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAIT 391
Query: 573 HIFKPEVQFVELSIEQYVSRGKKV-----KDDHAITTPIFKEKLTAAE 615
+ + +V+ + IE + GKK+ +DD + + E++T A+
Sbjct: 392 FVTQYDVELFQ-RIEHLI--GKKLPVFPTQDDEVM---MLTERVTEAQ 433
Score = 94 (38.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 55/213 (25%), Positives = 88/213 (41%)
Query: 71 PKPQGTEEFNEGSSF-DESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVA 129
P+P EE E +F D + V +A W P + + AI AL ++
Sbjct: 40 PQPAVQEE--ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIE----AIP-LALQGRDIIG 92
Query: 130 LP-TGLGKTLIAAVVIYNFFRWFPDGKIVFA-APSRPLVMQ---QIEACHNIVGIPQEWT 184
L TG GKT A+ I N P P+R L Q Q EA + +G+
Sbjct: 93 LAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQS--A 150
Query: 185 IDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL-MKYLVCLVIDEAHRATGNYA 243
+ + G S ++ + K + TP L +++ ++ L LV+DEA R N
Sbjct: 151 VIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL-NMD 209
Query: 244 YCTAIRELMSV-PVQLRILALTATPGSKQQTIQ 275
+ T + +++ V P + +AT K Q +Q
Sbjct: 210 FETEVDKILKVIPRDRKTFLFSATMTKKVQKLQ 242
>DICTYBASE|DDB_G0289659 [details] [associations]
symbol:rrpA "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0289659
GO:GO:0005524 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000148 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_636093.1
ProteinModelPortal:Q54H25 EnsemblProtists:DDB0191515 GeneID:8627305
KEGG:ddi:DDB_G0289659 InParanoid:Q54H25 Uniprot:Q54H25
Length = 2417
Score = 195 (73.7 bits), Expect = 3.0e-07, Sum P(4) = 3.0e-07
Identities = 119/516 (23%), Positives = 211/516 (40%)
Query: 106 VNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF------RWFPDGKIV-- 157
V + RDYQ + NTL+ LPTG+GKTL++ + + F D K +
Sbjct: 280 VEIIPRDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQDNSCGDSKRIAL 339
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR----VFFVTPQVL 213
F PLV QQ A I + + G+I+ ++ +F ++K V V V
Sbjct: 340 FLVDRVPLVTQQAGAIEAITNLK---VCKLYGEINDSRTRAFVRSKEYDVLVSTVGSLVN 396
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR--ILALTATPGSKQ 271
+++ L Y + DE H ATG + + + + + R IL LTA+ S
Sbjct: 397 LLEVRHLNILDFYFI--TFDEVHHATGEHDFNKVVDYIRKTDLNYRPRILGLTASLVSIG 454
Query: 272 QTIQHIIDNLYISTLEYRNESD--QDVSSYVHNRKIELIEVEM------GQEAVEINNRI 323
+ I+ I +E R S + S ++ + EL + E+ GQE++ I I
Sbjct: 455 NSTIDIVQRS-IKDMEERMLSRVFKPTSLLTNSTQSEL-QPELVSFKTSGQESL-IETSI 511
Query: 324 WEVIRPYTSRLSAIGLLQNRDYQTL--SPVDL--LNSRDKFRQAPPPNLPQIKFGEVEAY 379
E + + L + D + +P L L DK+ + Q++ +E Y
Sbjct: 512 CEFLVSNSKELQIFLNYSDVDLDGVRGNPSFLKALERLDKYSK-------QLESIYIE-Y 563
Query: 380 FGALITLYHIRRLLSSHG---IRPAYEMLEEKLKQGS--FARFMSKNEDIRKVKLLMQQS 434
LI LY + +LS+ G + ++L + Q + + + + I + +
Sbjct: 564 TKVLIELYALLSVLSTEGPKQVLTRLDLLMQSTNQENELYNKLLELRYYISGQYEDRESN 623
Query: 435 ISHGA-QSPKLSKMLEVLVDHFKTKD-PKHSRVIIFSNFRGSVRDIMNALAT--IGDLVK 490
G+ + KL LE + + K R+++F R ++ + L + +
Sbjct: 624 FEKGSTRYRKLISSLEYAISDASDGELQKDLRILVFVETRFGASNLTSMLKKEPFQEYLH 683
Query: 491 ATEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
+ + KFR G +IV T++ EEG+D+ + ++VIC+D
Sbjct: 684 TKRLVGHNGVDGMDSEKQQSI---IRKFRDGKCRLIVTTNVLEEGIDVQDCNIVICYDGI 740
Query: 551 VSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSI 586
+S +IQR GR K++ + I+ + L I
Sbjct: 741 LSLKSLIQRRGRARSKNESKFIIIYNDDKDLKILDI 776
Score = 47 (21.6 bits), Expect = 4.4e-07, Sum P(5) = 4.4e-07
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 735 CKSPAAHAYLFGSDFISVDALGKVLIISVPA-LP-FKELSHS 774
C P YL D I + L VL+ S +P FKE+S S
Sbjct: 1567 CTHPGDVRYLKAVDNIRLRHLRNVLVFSTKGDVPNFKEISGS 1608
Score = 43 (20.2 bits), Expect = 3.0e-07, Sum P(4) = 3.0e-07
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 755 LGKVLIISVPALPFKELSHSKKKRAPDTLLLNHWKQDSSPLKTSDKNYDELTVQSK 810
L +I+ + KE S + K + L +W D S D N ++L+ QSK
Sbjct: 877 LSSYIIVILNTCIDKEQSIYRLKSLLNINGLKYWMIDRSSFHFEDDNINDLS-QSK 931
Score = 40 (19.1 bits), Expect = 3.0e-07, Sum P(4) = 3.0e-07
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 1031 KRLRKVRDCEQNKNSENMKENAVAPVVNLARRFLGMSPIQNKHGRGRKK 1079
K + K E + N+ ++ +A R+ + N + +G K+
Sbjct: 2174 KYIDKCNPNELTNTTSNLTIGNWVKLIEIASRYFSVDNNNNNNNKGHKR 2222
Score = 38 (18.4 bits), Expect = 4.4e-07, Sum P(5) = 4.4e-07
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 666 HLQGLTFSRDDRT---FVEDEV-----SSDKHLGLQTVEPCETDERDNFHGTKKVTDS 715
++ GL + DR+ F +D + S +K+ +++ E +HG ++ DS
Sbjct: 903 NINGLKYWMIDRSSFHFEDDNINDLSQSKNKNYSIRSFEYGNMSSPTKYHGIGQLDDS 960
Score = 37 (18.1 bits), Expect = 3.0e-07, Sum P(4) = 3.0e-07
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 902 LIKSGVVPESPINENGASNNKGRN 925
++++ ++P N+N +NN N
Sbjct: 2101 IVENSMIPSIFNNKNHNNNNNNNN 2124
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 108 (43.1 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 33/103 (32%), Positives = 53/103 (51%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR-KHDGRIPH 573
L+ F++G V+VAT + GLDI +V +VI + + S I R+GRT R GR
Sbjct: 288 LKTFKSGKVKVLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAIS 347
Query: 574 IFKP-EVQFVELSIEQYVSRGKKV--KDDHAITTPIFKEKLTA 613
P +V ++ IE+ + + ++ DD + + KE TA
Sbjct: 348 FITPHDVSLIK-GIEEIIKKQLELYKTDDDEVFRHL-KEASTA 388
Score = 96 (38.9 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 41/146 (28%), Positives = 61/146 (41%)
Query: 127 LVALPTGLGKTLIAAVVIYNFFRWFPDGKI-VFAAPSRPLVMQQIEACHNIVGIPQEWTI 185
+ + TG GKT A+ I N P G V P+R L +Q I N +G P
Sbjct: 45 IASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQ-IGEQFNAIGAPMNVNC 103
Query: 186 DMT-GQISPTKRASFW-KTKRVFFVTPQVLEKDIQSGTCL-MKYLVCLVIDEAHRATGN- 241
+ G I +A K + TP L + +G + +K+ LV+DEA R G
Sbjct: 104 SVVIGGIDNVTQALILDKRPHIIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGED 163
Query: 242 -YAYCTAIRELMSVPVQLRILALTAT 266
+I E + P + + L +AT
Sbjct: 164 FELEIASILEHLPPPEKRQTLLFSAT 189
>WB|WBGene00008400 [details] [associations]
symbol:drh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0035188 "hatching" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0007276 "gamete generation" evidence=IMP]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IDA] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
[GO:0070063 "RNA polymerase binding" evidence=IPI] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0070090 "metaphase plate"
evidence=IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IMP] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0035188 GO:GO:0040010 GO:GO:0003727 GO:GO:0006974
GO:GO:0003725 GO:GO:0000794 GO:GO:0030422 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026
GO:GO:0043186 GO:GO:0008186 eggNOG:COG1111
GeneTree:ENSGT00510000046789 KO:K12646 EMBL:Z79752 GO:GO:0070090
PIR:T20332 RefSeq:NP_492161.3 ProteinModelPortal:Q93413 SMR:Q93413
IntAct:Q93413 MINT:MINT-6178703 STRING:Q93413 PaxDb:Q93413
EnsemblMetazoa:D2005.5 GeneID:172546 KEGG:cel:CELE_D2005.5
UCSC:D2005.5 CTD:172546 WormBase:D2005.5 HOGENOM:HOG000018535
InParanoid:Q93413 OMA:ACNLIIK NextBio:875985 Uniprot:Q93413
Length = 1119
Score = 109 (43.4 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 42/156 (26%), Positives = 70/156 (44%)
Query: 446 KMLEVLVDHFKTKDPKHSRVIIFSNFRGS---VRDIMN---ALATIGDL-VKATEFIXXX 498
++ L + F P+ SRVIIF R + V D +N L G+ + ++
Sbjct: 746 RLKNTLTNQFHVA-PE-SRVIIFVTQRSTAQRVSDFLNESKVLDQFGNYGEQMVGYVLGT 803
Query: 499 XXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV-SPLRMI 557
L+KF G VIVATS+ EEGLD+ +L+I ++ + S ++++
Sbjct: 804 NKQGAVQQTSQEQQLTLDKFNNGRLKVIVATSVVEEGLDVTACNLIIKYNCSSGSAIQLV 863
Query: 558 QRMGRTGRKHDGRIPHIFKPEVQFVE---LSIEQYV 590
Q+ GR K+ + K + E L E+Y+
Sbjct: 864 QQRGRARAKNSRSVLLSVKSSINETETNALISEKYM 899
Score = 102 (41.0 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 58/244 (23%), Positives = 105/244 (43%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAA-VVIYNFFRWFPDGK---IVFAAPSRP 164
+R YQ + + AL N ++ PTG GKT +A + + GK +V P P
Sbjct: 371 LRTYQEELVQPALEGKNCVIVAPTGSGKTEVAIYAALKHIEERTSQGKPSRVVLLVPKIP 430
Query: 165 LVMQQ----IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
LV QQ ++ C+ + + +S T R V +TPQ+L +QS
Sbjct: 431 LVGQQKDRFLKYCNGMYEV--NGFHGSESSVSGTGRRDEVIATHVSVMTPQILINMLQSV 488
Query: 221 TCLMKYLVC----LVIDEAHRATGNYAYCTAIRELMSVPVQL-RILALTATPGSK---QQ 272
+ V ++ DE H+A N+ Y + + + +I+ LTA+ K Q+
Sbjct: 489 RQNERLYVSDFSMMIFDEVHKAAKNHPYVLINQMVQEWKYEKPQIIGLTASLSVKVDGQK 548
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQ--EAVEINNRIWE-VIRP 329
+++++Y + L N +S+ I+ + +G+ ++VE+ E ++R
Sbjct: 549 DENQMLNDIY-NMLALINAPH--LSTITRQSSIDELNEHVGKPDDSVELCLPAKENILRD 605
Query: 330 YTSR 333
Y R
Sbjct: 606 YIER 609
>ZFIN|ZDB-GENE-030131-3445 [details] [associations]
symbol:dicer1 "Dicer1, Dcr-1 homolog (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=ISS;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0070883 "pre-miRNA binding" evidence=IDA] [GO:0021591
"ventricular system development" evidence=IGI;IMP] [GO:0035279
"mRNA cleavage involved in gene silencing by miRNA" evidence=IGI]
[GO:0035195 "gene silencing by miRNA" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720
ZFIN:ZDB-GENE-030131-3445 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0035279 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
GO:GO:0021591 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HSSP:P66666 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
eggNOG:COG0571 GO:GO:0070883 CTD:23405 HOGENOM:HOG000001567
EMBL:AL772219 EMBL:AY386319 IPI:IPI00933004 RefSeq:NP_001154925.1
UniGene:Dr.78137 STRING:Q6TV19 Ensembl:ENSDART00000045881
Ensembl:ENSDART00000109826 GeneID:324724 KEGG:dre:324724
InParanoid:Q6TV19 OrthoDB:EOG4JDH5W NextBio:20808937
ArrayExpress:Q6TV19 Bgee:Q6TV19 Uniprot:Q6TV19
Length = 1865
Score = 119 (46.9 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 45/161 (27%), Positives = 69/161 (42%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGK-IVFAAPSRPLVM 167
R YQ + + AL NT+V L TG GKT IA ++I +GK VF + V
Sbjct: 35 RKYQVELLEAALEHNTIVCLNTGSGKTFIAVLLIKELSHQIRGENGKRTVFLVNAASSVA 94
Query: 168 QQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMK 225
QQ H+ + + + DMT + + V +T + +++G +
Sbjct: 95 QQASTVRTHSDLQVGDYMSEDMTSWPEEMWNREMIENQ-VLVMTCHIFLHVLKNGVLPLS 153
Query: 226 YLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266
+ LV DE H A + Y ++ P RIL LTA+
Sbjct: 154 KINLLVFDECHLAITGHPYREIMKICEGCPSCPRILGLTAS 194
Score = 97 (39.2 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
L KFRA N+++ATSI EEG+DI + +LV+ FD +Q GR
Sbjct: 491 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 538
Score = 49 (22.3 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 940 SKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTAS 983
SKF S + E ++Y + N+ +S VN+ PLL ++HT+S
Sbjct: 944 SKFPS-PEYETFAEYYKTKY-NLDLSNVNQ----PLLDVDHTSS 981
Score = 40 (19.1 bits), Expect = 3.5e-06, Sum P(3) = 3.5e-06
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 722 LGTQE--NHSMPQSC 734
LGT NH+ P+SC
Sbjct: 1110 LGTSSDSNHTAPESC 1124
Score = 38 (18.4 bits), Expect = 5.5e-06, Sum P(3) = 5.5e-06
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 563 TGRKHDGRIPHIFKP 577
TGR D PH+ KP
Sbjct: 1218 TGRSSDLCDPHVKKP 1232
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 123 (48.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 58/240 (24%), Positives = 107/240 (44%)
Query: 11 NGDDDDEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLG 70
N ++D+E + + E + + +K + +N N N S+ C DK + +
Sbjct: 74 NIEEDNELNENSENNENNENDEDNKNNKNNENNENTSSE-----EICDHDKNDKTYTD-E 127
Query: 71 PKPQGTEEFNEGSS--FDESLCHVQID-AEAAKTWIYPVN-VPVRDYQFAITKTALFSNT 126
K ++ N S F L +++ +A K + +N V + + Q L
Sbjct: 128 IKSNNSDHNNNNSKEHFYSELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKD 187
Query: 127 LV-ALPTGLGKTLIAAV----VIYNFFRWFP-DGK-IVFAAPSRPLVMQQIEACHNIVG- 178
++ A TG GKTL V ++YN ++ P +G ++ +P+R L +Q + C ++
Sbjct: 188 ILGAAKTGSGKTLAFLVPSINILYNI-KFLPKNGTGVLIISPTRELCLQIYQVCKDLCKY 246
Query: 179 IPQEWTIDMTGQISPTKRASFWKTKRVFFVTP-QVLEKDIQSGTCLMKYLVCLVIDEAHR 237
IPQ I + G ++ F + TP ++L+ + + K L+CL+IDEA R
Sbjct: 247 IPQTNGIIIGGMSRNEEKKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADR 306
Score = 80 (33.2 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 518 FRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR---IPHI 574
F A +++ T++ GLDI V+ +I +D I R+GRT R D I +
Sbjct: 437 FSAAKCAILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFL 496
Query: 575 FKPEVQFV 582
K E++F+
Sbjct: 497 MKHELKFL 504
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 123 (48.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 58/240 (24%), Positives = 107/240 (44%)
Query: 11 NGDDDDEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLG 70
N ++D+E + + E + + +K + +N N N S+ C DK + +
Sbjct: 74 NIEEDNELNENSENNENNENDEDNKNNKNNENNENTSSE-----EICDHDKNDKTYTD-E 127
Query: 71 PKPQGTEEFNEGSS--FDESLCHVQID-AEAAKTWIYPVN-VPVRDYQFAITKTALFSNT 126
K ++ N S F L +++ +A K + +N V + + Q L
Sbjct: 128 IKSNNSDHNNNNSKEHFYSELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKD 187
Query: 127 LV-ALPTGLGKTLIAAV----VIYNFFRWFP-DGK-IVFAAPSRPLVMQQIEACHNIVG- 178
++ A TG GKTL V ++YN ++ P +G ++ +P+R L +Q + C ++
Sbjct: 188 ILGAAKTGSGKTLAFLVPSINILYNI-KFLPKNGTGVLIISPTRELCLQIYQVCKDLCKY 246
Query: 179 IPQEWTIDMTGQISPTKRASFWKTKRVFFVTP-QVLEKDIQSGTCLMKYLVCLVIDEAHR 237
IPQ I + G ++ F + TP ++L+ + + K L+CL+IDEA R
Sbjct: 247 IPQTNGIIIGGMSRNEEKKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADR 306
Score = 80 (33.2 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 518 FRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR---IPHI 574
F A +++ T++ GLDI V+ +I +D I R+GRT R D I +
Sbjct: 437 FSAAKCAILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFL 496
Query: 575 FKPEVQFV 582
K E++F+
Sbjct: 497 MKHELKFL 504
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 108 (43.1 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGR-IP 572
L KF+A ++++AT + GLDI VD+V+ FD I R+GRT R G+ I
Sbjct: 306 LNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAIT 365
Query: 573 HIFKPEVQFVELSIEQYVSRGKKV 596
+ + +V+ + IE + GKK+
Sbjct: 366 FVTQYDVELFQ-RIEHLI--GKKL 386
Score = 90 (36.7 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 53/210 (25%), Positives = 86/210 (40%)
Query: 74 QGTEEFNEGSSF-DESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALP- 131
Q E E +F D + V +A W P + + AI AL ++ L
Sbjct: 15 QTAAEEEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIE----AIP-LALQGRDIIGLAE 69
Query: 132 TGLGKTLIAAVVIYNFFRWFPDGKIVFA-APSRPLVMQ---QIEACHNIVGIPQEWTIDM 187
TG GKT A+ I N P P+R L Q Q EA + +G+ + + +
Sbjct: 70 TGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV--QCAVIV 127
Query: 188 TGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL-MKYLVCLVIDEAHRATGNYAYCT 246
G S ++ + K + TP L +++ ++ L LV+DEA R N + T
Sbjct: 128 GGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL-NMDFET 186
Query: 247 AIRELMSV-PVQLRILALTATPGSKQQTIQ 275
+ +++ V P + +AT K Q +Q
Sbjct: 187 EVDKILKVIPRDRKTFLFSATMTKKVQKLQ 216
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 108 (43.1 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGR-IP 572
L KF+A ++++AT + GLDI VD+V+ FD I R+GRT R G+ I
Sbjct: 306 LNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAIT 365
Query: 573 HIFKPEVQFVELSIEQYVSRGKKV 596
+ + +V+ + IE + GKK+
Sbjct: 366 FVTQYDVELFQ-RIEHLI--GKKL 386
Score = 90 (36.7 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 53/210 (25%), Positives = 86/210 (40%)
Query: 74 QGTEEFNEGSSF-DESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALP- 131
Q E E +F D + V +A W P + + AI AL ++ L
Sbjct: 15 QTAAEEEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIE----AIP-LALQGRDIIGLAE 69
Query: 132 TGLGKTLIAAVVIYNFFRWFPDGKIVFA-APSRPLVMQ---QIEACHNIVGIPQEWTIDM 187
TG GKT A+ I N P P+R L Q Q EA + +G+ + + +
Sbjct: 70 TGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV--QCAVIV 127
Query: 188 TGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL-MKYLVCLVIDEAHRATGNYAYCT 246
G S ++ + K + TP L +++ ++ L LV+DEA R N + T
Sbjct: 128 GGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL-NMDFET 186
Query: 247 AIRELMSV-PVQLRILALTATPGSKQQTIQ 275
+ +++ V P + +AT K Q +Q
Sbjct: 187 EVDKILKVIPRDRKTFLFSATMTKKVQKLQ 216
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 102 (41.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
L KF+A ++++AT + GLDI VD+V+ FD I R+GRT R
Sbjct: 305 LNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTAR 355
Score = 96 (38.9 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 54/211 (25%), Positives = 87/211 (41%)
Query: 73 PQGTEEFNEGSSF-DESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALP 131
PQ E E +F D + V +A W P + + AI AL ++ L
Sbjct: 13 PQTAVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIE----AIP-LALQGRDIIGLA 67
Query: 132 -TGLGKTLIAAVVIYNFFRWFPDGKIVFA-APSRPLVMQ---QIEACHNIVGIPQEWTID 186
TG GKT A+ I N P P+R L Q Q EA + +G+ + +
Sbjct: 68 ETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV--QCAVI 125
Query: 187 MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL-MKYLVCLVIDEAHRATGNYAYC 245
+ G S ++ + K + TP L +++ ++ L LV+DEA R N +
Sbjct: 126 VGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL-NMDFE 184
Query: 246 TAIRELMSV-PVQLRILALTATPGSKQQTIQ 275
T + +++ V P + +AT K Q +Q
Sbjct: 185 TEVDKILKVIPRDRKTFLFSATMTKKVQKLQ 215
>RGD|1309460 [details] [associations]
symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 58"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR007087 InterPro:IPR011545 InterPro:IPR021673
Pfam:PF00270 Pfam:PF00271 Pfam:PF11648 PROSITE:PS00028
PROSITE:PS51194 SMART:SM00490 RGD:1309460 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 IPI:IPI00780835
Ensembl:ENSRNOT00000060764 UCSC:RGD:1309460 ArrayExpress:D4ADT6
Uniprot:D4ADT6
Length = 922
Score = 109 (43.4 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 39/170 (22%), Positives = 72/170 (42%)
Query: 111 RDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R+YQ + A NT++ PTG GKT ++ ++ + + FP G K+VF A P+
Sbjct: 244 RNYQLELALPAKKGKNTVICAPTGCGKTFVSLLICEHHLKNFPHGQKGKVVFFANQIPVY 303
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRAS-FWKTKRVFFVTPQVLEKDIQSGTC-LM 224
QQ ++G + + + +TPQ+L + +G +
Sbjct: 304 EQQATVFSRYFERFGYNVAGISGATADNVSVQHIIENNDIVILTPQILVNSLNNGAIPSL 363
Query: 225 KYLVCLVIDEAHRATGNYAYCTAI-----RELMSVPVQL-RILALTATPG 268
++ DE H + ++ Y + +L P L +++ LTA+ G
Sbjct: 364 SVFTLMIFDECHNTSKHHPYNQIMFRYLDHKLGGSPDPLPQVIGLTASVG 413
Score = 101 (40.6 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 515 LEKFRAGG-YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
LE FRA N+++ATS+ +E +DI + +LVI ++ + + MIQ GR GR D +
Sbjct: 679 LEAFRANADNNILIATSVADERIDIAQCNLVILYEYVGNVINMIQTRGR-GRARDSK 734
Score = 41 (19.5 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 1005 ANSSCSRDWRLSSGDKSENVEPARKFKRLRKVRDCE---QNKNSE 1046
A +CS DW + K+ + P K + V D E QN++S+
Sbjct: 862 AKQNCSHDWGIFVRYKTFEI-PVIKIESF-VVEDIESGVQNRHSK 904
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 108 (43.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGR-IP 572
L KF+A ++++AT + GLDI VD+V+ FD I R+GRT R G+ I
Sbjct: 306 LNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAIT 365
Query: 573 HIFKPEVQFVELSIEQYVSRGKKV 596
+ + +V+ + IE + GKK+
Sbjct: 366 FVTQYDVELFQ-RIEHLI--GKKL 386
Score = 88 (36.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 52/206 (25%), Positives = 84/206 (40%)
Query: 78 EFNEGSSF-DESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALP-TGLG 135
E E +F D + V +A W P + + AI AL ++ L TG G
Sbjct: 19 EEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIE----AIP-LALQGRDIIGLAETGSG 73
Query: 136 KTLIAAVVIYNFFRWFPDGKIVFA-APSRPLVMQ---QIEACHNIVGIPQEWTIDMTGQI 191
KT A+ I N P P+R L Q Q EA + +G+ + + G
Sbjct: 74 KTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQS--AVIVGGID 131
Query: 192 SPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL-MKYLVCLVIDEAHRATGNYAYCTAIRE 250
S ++ + K + TP L +++ ++ L LV+DEA R N + T + +
Sbjct: 132 SMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL-NMDFETEVDK 190
Query: 251 LMSV-PVQLRILALTATPGSKQQTIQ 275
++ V P + +AT K Q +Q
Sbjct: 191 ILKVIPRDRKTFLFSATMTKKVQKLQ 216
>UNIPROTKB|I3L6Y9 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
OMA:FLEYDQE GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:CU915626
Ensembl:ENSSSCT00000022914 Uniprot:I3L6Y9
Length = 1565
Score = 124 (48.7 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 47/164 (28%), Positives = 76/164 (46%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI----YNFFRWFP-DGK-IVFAAPSRP 164
R YQ + + AL NT+V L TG GKT IA ++ Y F +GK VF S
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNSAN 104
Query: 165 LVMQQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
V QQ+ A H+ + + + +++ + K + +V +T V +++G
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSNLEVNASWTKEKWNQEFTKHQVLVMTCSVALNVLKNGYL 164
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266
+ + LV DE H A ++ Y ++ + P RIL LTA+
Sbjct: 165 ALSDINLLVFDECHLAILDHPYREIMKLCENCPSCPRILGLTAS 208
Score = 97 (39.2 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
L KFRA N+++ATSI EEG+DI + +LV+ FD +Q GR
Sbjct: 505 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Score = 43 (20.2 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 940 SKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTAS 983
SKF S + E ++Y + N+ ++ +N+ PLL ++HT+S
Sbjct: 958 SKFPS-PEYETFAEYYKTKY-NLDLTNLNQ----PLLDVDHTSS 995
Score = 38 (18.4 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 424 IRKVKLLMQQSISHGAQ-----SPKLSKMLEVL 451
+RKV L + S A +PK+ K+LE+L
Sbjct: 352 LRKVHALCEGHFSPAALDLRFVTPKVIKLLEIL 384
>UNIPROTKB|F1NJX0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0005524
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00818350 EMBL:AADN02003674
Ensembl:ENSGALT00000037569 ArrayExpress:F1NJX0 Uniprot:F1NJX0
Length = 1921
Score = 125 (49.1 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 47/164 (28%), Positives = 77/164 (46%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI----YNFFRWF-PDGK-IVFAAPSRP 164
R YQ + + AL NT+V L TG GKT IA ++ Y F +GK VF S
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSAN 104
Query: 165 LVMQQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
V QQ+ A H+ + + + ++++T + K + + +V +T V +++
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYL 164
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266
+ + LV DE H A ++ Y ++ P RIL LTA+
Sbjct: 165 SLSNINLLVFDECHLAIQDHPYREIMKICEDYPSCPRILGLTAS 208
Score = 99 (39.9 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 34/137 (24%), Positives = 64/137 (46%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHI 574
L KFRA N+++ATSI EEG+DI + +LV+ FD +Q GR I
Sbjct: 505 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIMLA 564
Query: 575 FKPEVQFVELSIEQYVSRGKKVKD--DHAITTPIFKEKLTAAETDLIAKYFHPTSDSTWR 632
+++ E ++ Y + K +++ ++ T + + + D+ Y T +++ R
Sbjct: 565 DTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETETEPIVDDDDVFPPYVLRTDENSPR 624
Query: 633 PSL-IAFPHFQALPSRV 648
++ A H +R+
Sbjct: 625 VTINTAIGHINRYCARL 641
Score = 43 (20.2 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 940 SKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTAS 983
SKF S + E ++Y + N+ ++ +N+ PLL ++HT+S
Sbjct: 958 SKFPS-PEYETFAEYYKTKY-NLDLTNLNQ----PLLDVDHTSS 995
Score = 38 (18.4 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 424 IRKVKLLMQQSISHGAQ-----SPKLSKMLEVL 451
+RK+ L ++ S + +PK+ K+LE+L
Sbjct: 352 LRKIHALCEEHFSPASLDLKFVTPKVIKLLEIL 384
>UNIPROTKB|Q25BN1 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0030423 "targeting of mRNA
for destruction involved in RNA interference" evidence=ISS]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=ISS] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 CTD:23405 HOGENOM:HOG000001567 EMBL:AB253768
IPI:IPI00818350 RefSeq:NP_001035555.1 UniGene:Gga.33735
ProteinModelPortal:Q25BN1 SMR:Q25BN1 STRING:Q25BN1 GeneID:423437
KEGG:gga:423437 NextBio:20825910 Uniprot:Q25BN1
Length = 1921
Score = 125 (49.1 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 47/164 (28%), Positives = 77/164 (46%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI----YNFFRWF-PDGK-IVFAAPSRP 164
R YQ + + AL NT+V L TG GKT IA ++ Y F +GK VF S
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSAN 104
Query: 165 LVMQQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
V QQ+ A H+ + + + ++++T + K + + +V +T V +++
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYL 164
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266
+ + LV DE H A ++ Y ++ P RIL LTA+
Sbjct: 165 SLSNINLLVFDECHLAIQDHPYREIMKICEDYPSCPRILGLTAS 208
Score = 99 (39.9 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 34/137 (24%), Positives = 64/137 (46%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHI 574
L KFRA N+++ATSI EEG+DI + +LV+ FD +Q GR I
Sbjct: 505 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIMLA 564
Query: 575 FKPEVQFVELSIEQYVSRGKKVKD--DHAITTPIFKEKLTAAETDLIAKYFHPTSDSTWR 632
+++ E ++ Y + K +++ ++ T + + + D+ Y T +++ R
Sbjct: 565 DTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETETEPIVDDDDVFPPYVLRTDENSPR 624
Query: 633 PSL-IAFPHFQALPSRV 648
++ A H +R+
Sbjct: 625 VTINTAIGHINRYCARL 641
Score = 43 (20.2 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 940 SKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTAS 983
SKF S + E ++Y + N+ ++ +N+ PLL ++HT+S
Sbjct: 958 SKFPS-PEYETFAEYYKTKY-NLDLTNLNQ----PLLDVDHTSS 995
Score = 38 (18.4 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 424 IRKVKLLMQQSISHGAQ-----SPKLSKMLEVL 451
+RK+ L ++ S + +PK+ K+LE+L
Sbjct: 352 LRKIHALCEEHFSPASLDLKFVTPKVIKLLEIL 384
>UNIPROTKB|F1NP11 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0010070 "zygote asymmetric cell division"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0043066 GO:GO:0051225 GO:GO:0045595
Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0000122 GO:GO:0051726
GO:GO:0003725 GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0008026
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 OMA:FLEYDQE GO:GO:0071335
GO:GO:0031643 GO:GO:0070173 EMBL:AADN02003674 IPI:IPI00603674
Ensembl:ENSGALT00000017910 ArrayExpress:F1NP11 Uniprot:F1NP11
Length = 1925
Score = 125 (49.1 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 47/164 (28%), Positives = 77/164 (46%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI----YNFFRWF-PDGK-IVFAAPSRP 164
R YQ + + AL NT+V L TG GKT IA ++ Y F +GK VF S
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSAN 104
Query: 165 LVMQQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
V QQ+ A H+ + + + ++++T + K + + +V +T V +++
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYL 164
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266
+ + LV DE H A ++ Y ++ P RIL LTA+
Sbjct: 165 SLSNINLLVFDECHLAIQDHPYREIMKICEDYPSCPRILGLTAS 208
Score = 99 (39.9 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 34/137 (24%), Positives = 64/137 (46%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHI 574
L KFRA N+++ATSI EEG+DI + +LV+ FD +Q GR I
Sbjct: 505 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIMLA 564
Query: 575 FKPEVQFVELSIEQYVSRGKKVKD--DHAITTPIFKEKLTAAETDLIAKYFHPTSDSTWR 632
+++ E ++ Y + K +++ ++ T + + + D+ Y T +++ R
Sbjct: 565 DTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETETEPIVDDDDVFPPYVLRTDENSPR 624
Query: 633 PSL-IAFPHFQALPSRV 648
++ A H +R+
Sbjct: 625 VTINTAIGHINRYCARL 641
Score = 43 (20.2 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 940 SKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTAS 983
SKF S + E ++Y + N+ ++ +N+ PLL ++HT+S
Sbjct: 962 SKFPS-PEYETFAEYYKTKY-NLDLTNLNQ----PLLDVDHTSS 999
Score = 38 (18.4 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 424 IRKVKLLMQQSISHGAQ-----SPKLSKMLEVL 451
+RK+ L ++ S + +PK+ K+LE+L
Sbjct: 352 LRKIHALCEEHFSPASLDLKFVTPKVIKLLEIL 384
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 107 (42.7 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 36/116 (31%), Positives = 54/116 (46%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHI 574
L KF+ G ++VAT + GLDI V V FD P + R+GRTGR +
Sbjct: 283 LRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMT 342
Query: 575 F-KP----EVQFVELSIEQYVSRGKKVKDDHAITTP--IFKEKL-TAAETDLIAKY 622
F P ++ +E + ++ + R K D A+ I EKL ET+ ++ Y
Sbjct: 343 FVTPREIGQLHHIERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFY 398
Score = 86 (35.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 51/244 (20%), Positives = 100/244 (40%)
Query: 132 TGLGKTLIAAVVIYNFFRWFPDG-KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTG- 189
TG GKT + I + + AP+R L +Q E + I + + + + G
Sbjct: 48 TGTGKTAAFGIPIVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGG 107
Query: 190 -QISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAI 248
I RA K V TP + I GT ++++ +V+DEA N + I
Sbjct: 108 QDIERQIRA-LKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEML-NMGFIEDI 165
Query: 249 RELMS-VPVQLRILALTAT-PGSKQQTIQHIIDNLYISTLEYRNESDQDVSSY---VHNR 303
++S VP + + L +AT P ++ + ++ + ++ + + ++ Y VH +
Sbjct: 166 EAILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEK 225
Query: 304 K-----IELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRD 358
K L++++ + A+ + R + L+ G + LS L+
Sbjct: 226 KKFDILTRLLDIQAPELAI-VFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLR 284
Query: 359 KFRQ 362
KF++
Sbjct: 285 KFKE 288
>WB|WBGene00001090 [details] [associations]
symbol:drh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016246
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00510000046789 HSSP:P10081
EMBL:AF480439 EMBL:FO080250 PIR:T32534 RefSeq:NP_501018.1
UniGene:Cel.32668 ProteinModelPortal:G5EDI8 SMR:G5EDI8
IntAct:G5EDI8 EnsemblMetazoa:F15B10.2 GeneID:177425
KEGG:cel:CELE_F15B10.2 CTD:177425 WormBase:F15B10.2 OMA:YRMINIR
NextBio:896758 Uniprot:G5EDI8
Length = 1037
Score = 110 (43.8 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 38/143 (26%), Positives = 69/143 (48%)
Query: 433 QSISHG-AQSPKLSKMLEVLVDHFKTKDPKHSRVIIF--SNFRGSVRD-IMNA---LATI 485
Q + G A++P +SK ++ +V+ + SR IIF + + ++ + ++N+ L +
Sbjct: 671 QLVGTGSAENPMISKTVQYIVE--QNLQRADSRTIIFVRTRYEATILNKVLNSNEELLML 728
Query: 486 GDLVKATEFIXXXXXXXXXXXXXXXXXXXLEK---FRAGGYNVIVATSIGEEGLDIMEVD 542
G +K+ +EK F G ++V+TS+ EEGLD+ E
Sbjct: 729 G--IKSEWMSGLNKSTASSADISASKQKQMEKLKMFADGEIRILVSTSVAEEGLDVPECS 786
Query: 543 LVICFDANVSPLRMIQRMGRTGR 565
LVI ++ + + +QR GR GR
Sbjct: 787 LVIKYNYATNEIAHVQRRGR-GR 808
Score = 100 (40.3 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 40/157 (25%), Positives = 66/157 (42%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRW-FPDGK---IVFAAPSRP 164
+R+YQ + + AL NT+V PTG GKT+IAA +I F +GK +F P+
Sbjct: 293 LRNYQEELCQVALQGKNTIVTAPTGSGKTVIAANIIKEHFESRSSEGKRFKALFMTPNSM 352
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQV-----------L 213
++ QQ + + + I PT+ ++K + TPQ+ L
Sbjct: 353 ILNQQAASISSYLDHVYHTQIIQGSDNVPTRNVI--QSKDLIVATPQMIVNLCNEHRNSL 410
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRE 250
+ + + + + DE H N Y +RE
Sbjct: 411 DDESRLDQFFLSTFTIIFFDECHNTVKNSPYSNIMRE 447
Score = 38 (18.4 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 1033 LRKVRDCEQNKNSENMKENAVAPVVNLAR 1061
++ +RD +Q + + +A VVNL R
Sbjct: 1007 VQTMRDADQARTPMVFEHHANGEVVNLIR 1035
>UNIPROTKB|Q6TUI4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0016442 "RNA-induced
silencing complex" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HSSP:P66666 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AY386968 IPI:IPI00715122
RefSeq:NP_976235.1 UniGene:Bt.45343 UniGene:Bt.89150
ProteinModelPortal:Q6TUI4 SMR:Q6TUI4 STRING:Q6TUI4 PRIDE:Q6TUI4
GeneID:337871 KEGG:bta:337871 CTD:23405 HOGENOM:HOG000001567
NextBio:20812451 Uniprot:Q6TUI4
Length = 1923
Score = 124 (48.7 bits), Expect = 3.8e-06, Sum P(4) = 3.8e-06
Identities = 47/164 (28%), Positives = 77/164 (46%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI----YNFFRWFP-DGK-IVFAAPSRP 164
R YQ + + AL NT+V L TG GKT IA ++ Y F +GK VF S
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNSAN 104
Query: 165 LVMQQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
V QQ+ A H+ + + + ++++ + K + +V +T V +++G
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLIMTCYVALNVLKNGYL 164
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266
+ + LV DE H A ++ Y ++ + P RIL LTA+
Sbjct: 165 SLSDINLLVFDECHLAILDHPYREIMKLCENCPSCPRILGLTAS 208
Score = 97 (39.2 bits), Expect = 3.8e-06, Sum P(4) = 3.8e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
L KFRA N+++ATSI EEG+DI + +LV+ FD +Q GR
Sbjct: 505 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Score = 43 (20.2 bits), Expect = 3.8e-06, Sum P(4) = 3.8e-06
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 940 SKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTAS 983
SKF S + E ++Y + N+ ++ +N+ PLL ++HT+S
Sbjct: 957 SKFPS-PEYETFAEYYKTKY-NLDLTNLNQ----PLLDVDHTSS 994
Score = 38 (18.4 bits), Expect = 3.8e-06, Sum P(4) = 3.8e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 424 IRKVKLLMQQSISHGAQ-----SPKLSKMLEVL 451
+RK+ L ++ S + +PK+ K+LE+L
Sbjct: 352 LRKIHALCEEHFSPASLDLKFVTPKVIKLLEIL 384
Score = 38 (18.4 bits), Expect = 1.2e-05, Sum P(4) = 1.2e-05
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 624 HPTSDSTWRPSLIAFPHFQ 642
HP +D T R + F +F+
Sbjct: 1653 HPEADRTLRHLISGFENFE 1671
>UNIPROTKB|E1BJZ0 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0016925 "protein sumoylation" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0042981 "regulation
of apoptotic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0042981
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0045087
GO:GO:0009615 GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
SUPFAM:SSF47986 GO:GO:0043021 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016925 GeneTree:ENSGT00510000046789
CTD:64135 KO:K12647 OMA:KCGQAWG EMBL:DAAA02004416 IPI:IPI00702873
RefSeq:XP_002685384.1 RefSeq:XP_615590.2 UniGene:Bt.24098
Ensembl:ENSBTAT00000010703 GeneID:535490 KEGG:bta:535490
NextBio:20876765 Uniprot:E1BJZ0
Length = 1021
Score = 122 (48.0 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 38/142 (26%), Positives = 66/142 (46%)
Query: 425 RKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT 484
+K+K L Q H ++ KL K+ +++ + + +R IIF+ R S + +
Sbjct: 680 KKLKKLAQNP-EH--ENEKLIKLRNTIMEQYSRTEGS-ARGIIFTKTRQSAYALSQWIIE 735
Query: 485 ---IGDL-VKATEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIME 540
++ VKA I + KFR G N+++AT++ EEGLDI E
Sbjct: 736 NEKFSEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 795
Query: 541 VDLVICFDANVSPLRMIQRMGR 562
++VI + + + M+Q GR
Sbjct: 796 CNIVIRYGLVTNEIAMVQARGR 817
Score = 80 (33.2 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 38/158 (24%), Positives = 64/158 (40%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFF---RWFPDGKIVFAAPSRPL 165
+R YQ + + AL N ++ LPTG GKT +A + + + GK++ PL
Sbjct: 307 LRPYQLEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKASEHGKVMVLVNKVPL 366
Query: 166 VMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASF---WKTKRVFFVTPQVLEKDI---- 217
V Q ++W +T T+ + +F K+ V T Q+LE +
Sbjct: 367 VEQLFRK--EFKPFLKKW-YHVTRLSGDTQLKITFPEVVKSHDVIISTAQILENSLLNSE 423
Query: 218 ---QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM 252
G L + + ++IDE H Y +R +
Sbjct: 424 EGEDDGIELSDFSL-IIIDECHHTNKEAVYNNIMRRFL 460
Score = 45 (20.9 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 80 NEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDY 113
++GSS D++ C++ I A+ Y PV DY
Sbjct: 3 SDGSSTDKNFCYL-ISCFRARVKRYIQVEPVLDY 35
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 124 (48.7 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 36/106 (33%), Positives = 53/106 (50%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDG--RIP 572
L KF++G +++AT + GLDI VDLVI +D P + R+GRT R G +
Sbjct: 345 LSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVS 404
Query: 573 HIFKPEVQFVELSIEQYVSR-----GKKVKDDHAITTPIFKEKLTA 613
I + +V+ + IE+ V + KKV D T + K K A
Sbjct: 405 IITETDVKLIH-KIEEEVGKKMEPYNKKVITDSLEVTKVSKAKRVA 449
Score = 68 (29.0 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 60/266 (22%), Positives = 98/266 (36%)
Query: 35 KPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLGPKPQGTEEFNEGSSFD-------E 87
+P+ + SK+ K P T K + PQ + N S D E
Sbjct: 3 EPTPEEEGGITIMSKSRKNPKTVVNIQSQKLDSDQNT-PQFEKFTNPNPSSDTTSATNFE 61
Query: 88 SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNF 147
L + E K PV+ + + K + L TG GKT A+ I +
Sbjct: 62 GLGLAEWAVETCKELGMRKPTPVQTH--CVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 148 FRWFPDGKIVFA---APSRPLVMQ---QIEACHNIVGIPQEWTIDMTGQISPTKRASFWK 201
P G VFA P+R L Q Q +A + + + ++ + G T+ S
Sbjct: 120 LAEDPYG--VFALVVTPTRELAFQLAEQFKALGSCLNL--RCSVIVGGMDMLTQTMSLVS 175
Query: 202 TKRVFFVTP---QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS-VPVQ 257
+ TP +VL ++ + LV+DEA R + + +R + +P
Sbjct: 176 RPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVL-DVGFQDELRTIFQCLPKS 234
Query: 258 LRILALTATPGSKQQTI-QHIIDNLY 282
+ L +AT S Q + +H + Y
Sbjct: 235 RQTLLFSATMTSNLQALLEHSSNKAY 260
>UNIPROTKB|F1MCQ5 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00715122 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:DAAA02053090
Ensembl:ENSBTAT00000017080 ArrayExpress:F1MCQ5 Uniprot:F1MCQ5
Length = 1920
Score = 123 (48.4 bits), Expect = 4.8e-06, Sum P(4) = 4.8e-06
Identities = 47/164 (28%), Positives = 77/164 (46%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI----YNFFRWFP-DGK-IVFAAPSRP 164
R YQ + + AL NT+V L TG GKT IA ++ Y F +GK VF S
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNSAN 104
Query: 165 LVMQQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
V QQ+ A H+ + + + ++++ + K + +V +T V +++G
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLVMTCYVALNVLKNGYL 164
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266
+ + LV DE H A ++ Y ++ + P RIL LTA+
Sbjct: 165 SLSDINLLVFDECHLAILDHPYREIMKLCENCPSCPRILGLTAS 208
Score = 97 (39.2 bits), Expect = 4.8e-06, Sum P(4) = 4.8e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
L KFRA N+++ATSI EEG+DI + +LV+ FD +Q GR
Sbjct: 505 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Score = 43 (20.2 bits), Expect = 4.8e-06, Sum P(4) = 4.8e-06
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 940 SKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTAS 983
SKF S + E ++Y + N+ ++ +N+ PLL ++HT+S
Sbjct: 957 SKFPS-PEYETFAEYYKTKY-NLDLTNLNQ----PLLDVDHTSS 994
Score = 38 (18.4 bits), Expect = 4.8e-06, Sum P(4) = 4.8e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 424 IRKVKLLMQQSISHGAQ-----SPKLSKMLEVL 451
+RK+ L ++ S + +PK+ K+LE+L
Sbjct: 352 LRKIHALCEEHFSPASLDLKFVTPKVIKLLEIL 384
Score = 38 (18.4 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 624 HPTSDSTWRPSLIAFPHFQ 642
HP +D T R + F +F+
Sbjct: 1650 HPDADRTLRHLISGFENFE 1668
>POMBASE|SPCC188.13c [details] [associations]
symbol:dcr1 "dicer" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005720 "nuclear heterochromatin"
evidence=IC] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006396 "RNA processing" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0031048 "chromatin silencing by small RNA"
evidence=TAS] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:0035389 "establishment of chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051570 "regulation of histone H3-K9
methylation" evidence=IMP] [GO:0051983 "regulation of chromosome
segregation" evidence=IMP] [GO:0090052 "regulation of chromatin
silencing at centromere" evidence=IMP] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR006935
Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 Pfam:PF04851 PROSITE:PS00517
PROSITE:PS50142 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490
SMART:SM00535 PomBase:SPCC188.13c GO:GO:0005829 GO:GO:0005524
GO:GO:0007059 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 GO:GO:0003723
GO:GO:0007049 GO:GO:0004386 GO:GO:0031048 GO:GO:0090052
GO:GO:0051570 GO:GO:0030422 GO:GO:0004540 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0051983 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PIR:T39130 RefSeq:NP_588215.2 PDB:2L6M PDBsum:2L6M
ProteinModelPortal:Q09884 STRING:Q09884 EnsemblFungi:SPCC188.13c.1
GeneID:2538930 KEGG:spo:SPCC188.13c OMA:RMCLICN OrthoDB:EOG4PRWZS
NextBio:20800107 GO:GO:0035389 Uniprot:Q09884
Length = 1374
Score = 116 (45.9 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 33/122 (27%), Positives = 58/122 (47%)
Query: 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG-DLVKATEFIXXX-XX 500
K+ K+LE+L ++ D R +IF + + + + T+ ++A FI
Sbjct: 344 KVFKLLELLKATYRKSDSV--RTVIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGPSD 401
Query: 501 XXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
L KF+ G YNV++AT++ EEG+D+ +LVI F+ + + +Q
Sbjct: 402 QGEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSR 461
Query: 561 GR 562
GR
Sbjct: 462 GR 463
Score = 91 (37.1 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 43/155 (27%), Positives = 64/155 (41%)
Query: 110 VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW--------FPDGKI-VFAA 160
+R YQ + A NTL+ + TG GKTL+A +I KI VF
Sbjct: 12 LRKYQQDVYNIASKQNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVFLV 71
Query: 161 PSRPLVMQQIEACHNI----VGIPQ-EWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEK 215
PLV QQ E + VG+ E +I+M+ Q+ + V +T +
Sbjct: 72 NKVPLVFQQAEYIRSQLPAKVGMFYGELSIEMSEQLLTNIILKY----NVIVITADLFYL 127
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRE 250
+ G + L ++ DE H A GN AY + +
Sbjct: 128 FLARGFLSINDLNLIIFDECHHAIGNDAYARIMND 162
Score = 43 (20.2 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 842 KPLDGFEEILDSPVLRRNQLREE 864
KPLD +I D L ++L++E
Sbjct: 619 KPLDFRRKIADLETLEEDELKDE 641
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 141 (54.7 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 65/246 (26%), Positives = 108/246 (43%)
Query: 373 FG-EVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQ-GSFARFMSKNEDIRKVKLL 430
FG +++ F L T + LL + I A L+EK G FM + E + KV +
Sbjct: 164 FGSDLQRCFDVLPTSDKRQTLLFTATITDAVRALKEKPPTPGKPPVFMHEVETVDKVAIP 223
Query: 431 MQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK 490
IS+ P K L + K S +IF N R + +++ + ++
Sbjct: 224 STLQISY-VFVPSYVKEA-YLNSILHLEQFKDSTAVIFVN-RTTTAEVLRRM------LR 274
Query: 491 ATEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
+F L +F+AG +++AT + GLDI V+LVI FD
Sbjct: 275 KLDF---RVASLHSEMPQSERTNSLHRFKAGAARILIATDVASRGLDIPTVELVINFDIP 331
Query: 551 VSPLRMIQRMGRT---GRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIF 607
P I R+GRT GRK D + I + ++ ++ SIE+ +++ ++ +D +
Sbjct: 332 ADPDDFIHRVGRTARAGRKGDA-VSIIGEKDIDRIQ-SIEERINKKMELLED-VNDDNVI 388
Query: 608 KEKLTA 613
KE L+A
Sbjct: 389 KESLSA 394
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 109 (43.4 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 29/79 (36%), Positives = 37/79 (46%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGRIPH 573
L KF+ G V+VAT + GLDI V V FD P + R+GRTGR G
Sbjct: 284 LRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMT 343
Query: 574 IFKPEVQFVELSIEQYVSR 592
P + + +IEQ R
Sbjct: 344 FITPREKDMLRAIEQTTKR 362
Score = 82 (33.9 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 53/244 (21%), Positives = 98/244 (40%)
Query: 132 TGLGKTLIAAV-VIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTG- 189
TG GKT + ++ P+ + + AP+R L +Q E + I + + + G
Sbjct: 49 TGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGG 108
Query: 190 -QISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAI 248
I RA K + TP L I T ++ + +V+DEA N + I
Sbjct: 109 QDIGRQIRA-LKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEML-NMGFIEDI 166
Query: 249 RELMS-VPVQLRILALTAT-PGSKQQTIQHIIDN---LYISTLEYRNESDQDVSSYVHNR 303
++S VP + + L +AT P ++ + + N + + E + Q VH R
Sbjct: 167 ESILSNVPAEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHER 226
Query: 304 K-----IELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRD 358
K L++++ + A+ + R + T L+ G + L+ + +
Sbjct: 227 KKFDTLTRLLDIQSPELAI-VFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALR 285
Query: 359 KFRQ 362
KF+Q
Sbjct: 286 KFKQ 289
>UNIPROTKB|E9PU15 [details] [associations]
symbol:Dicer1 "Protein Dicer1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 RGD:1309381 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 IPI:IPI00365891
Ensembl:ENSRNOT00000014405 Uniprot:E9PU15
Length = 1908
Score = 123 (48.4 bits), Expect = 5.8e-06, Sum P(4) = 5.8e-06
Identities = 45/164 (27%), Positives = 74/164 (45%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF-----PDGK-IVFAAPSRP 164
R YQ + + AL NT+V L TG GKT IA ++ P K VF S
Sbjct: 35 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLSPHAKRTVFLVNSAN 94
Query: 165 LVMQQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
V QQ+ A H+ + + + +++ + + + + +V +T V +++G
Sbjct: 95 QVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWSQEFTKHQVLIMTCYVALNVLKNGYL 154
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266
+ + LV DE H A ++ Y ++ S P RIL LTA+
Sbjct: 155 SLSDINLLVFDECHLAILDHPYREIMKLCDSCPSCPRILGLTAS 198
Score = 96 (38.9 bits), Expect = 5.8e-06, Sum P(4) = 5.8e-06
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
L KFRA N+++ATS+ EEG+DI + +LV+ FD +Q GR
Sbjct: 495 LRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 542
Score = 43 (20.2 bits), Expect = 5.8e-06, Sum P(4) = 5.8e-06
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 940 SKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTAS 983
SKF S + E ++Y + N+ ++ +N+ PLL ++HT+S
Sbjct: 948 SKFPS-PEYETFAEYYKTKY-NLDLTNLNQ----PLLDVDHTSS 985
Score = 38 (18.4 bits), Expect = 5.8e-06, Sum P(4) = 5.8e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 424 IRKVKLLMQQSISHGAQ-----SPKLSKMLEVL 451
+RK+ L ++ S + +PK+ K+LE+L
Sbjct: 342 LRKIHALCEEYFSPASLDLKYVTPKVMKLLEIL 374
>UNIPROTKB|E2RIN4 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000630 "positive regulation of miRNA
metabolic process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 CTD:23405 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:AAEX03005955 RefSeq:XP_868526.2
Ensembl:ENSCAFT00000028082 GeneID:480426 KEGG:cfa:480426
Uniprot:E2RIN4
Length = 1923
Score = 122 (48.0 bits), Expect = 6.1e-06, Sum P(4) = 6.1e-06
Identities = 47/164 (28%), Positives = 76/164 (46%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI----YNFFRWFP-DGK-IVFAAPSRP 164
R YQ + + AL NT+V L TG GKT IA ++ Y F +GK VF S
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNSAN 104
Query: 165 LVMQQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
V QQ+ A H+ + + + +++ + K + +V +T V +++G
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSNLEVNASWTKEKWNQEFTKHQVLVMTCYVALNVLKNGYL 164
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266
+ + LV DE H A ++ Y ++ + P RIL LTA+
Sbjct: 165 SLSDINLLVFDECHLAILDHPYREIMKLCENCPSCPRILGLTAS 208
Score = 97 (39.2 bits), Expect = 6.1e-06, Sum P(4) = 6.1e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
L KFRA N+++ATSI EEG+DI + +LV+ FD +Q GR
Sbjct: 505 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Score = 43 (20.2 bits), Expect = 6.1e-06, Sum P(4) = 6.1e-06
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 940 SKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTAS 983
SKF S + E ++Y + N+ ++ +N+ PLL ++HT+S
Sbjct: 958 SKFPS-PEYETFAEYYKTKY-NLDLTNLNQ----PLLDVDHTSS 995
Score = 40 (19.1 bits), Expect = 1.2e-05, Sum P(4) = 1.2e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 862 REEDTTDETLDVNEIKEPLSPDDEYHNDL 890
++E T D L ++ E DDE DL
Sbjct: 1400 KDEMTKDCMLANGKLDEDFEEDDEEEEDL 1428
Score = 38 (18.4 bits), Expect = 6.1e-06, Sum P(4) = 6.1e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 424 IRKVKLLMQQSISHGAQ-----SPKLSKMLEVL 451
+RK+ L ++ S + +PK+ K+LE+L
Sbjct: 352 LRKIHALCEEHFSPASLDLKFVTPKVIKLLEIL 384
>UNIPROTKB|Q9UPY3 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0010070
"zygote asymmetric cell division" evidence=IEA] [GO:0019827 "stem
cell maintenance" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0021889 "olfactory bulb
interneuron differentiation" evidence=IEA] [GO:0021987 "cerebral
cortex development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035264
"multicellular organism growth" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045069
"regulation of viral genome replication" evidence=IEA] [GO:0045664
"regulation of neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048536 "spleen development"
evidence=IEA] [GO:0048713 "regulation of oligodendrocyte
differentiation" evidence=IEA] [GO:0048754 "branching morphogenesis
of an epithelial tube" evidence=IEA] [GO:0051225 "spindle assembly"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IEA] [GO:0055013
"cardiac muscle cell development" evidence=IEA] [GO:0060119 "inner
ear receptor cell development" evidence=IEA] [GO:0060576
"intestinal epithelial cell development" evidence=IEA] [GO:0070173
"regulation of enamel mineralization" evidence=IEA] [GO:0071335
"hair follicle cell proliferation" evidence=IEA] [GO:2000630
"positive regulation of miRNA metabolic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031054 "pre-miRNA processing"
evidence=IDA] [GO:0030423 "targeting of mRNA for destruction
involved in RNA interference" evidence=IMP] [GO:0030422 "production
of siRNA involved in RNA interference" evidence=IDA] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0048812 "neuron projection morphogenesis" evidence=ISS]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISS] [GO:0031643 "positive regulation of myelination"
evidence=ISS] [GO:0021675 "nerve development" evidence=ISS]
[GO:0014040 "positive regulation of Schwann cell differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=ISS] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISS] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005829 GO:GO:0005524
GO:GO:0010070 GO:GO:0006915 GO:GO:0021987 GO:GO:0043066
GO:GO:0045664 EMBL:CH471061 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0010626 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:23405
HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W EMBL:AB028449 EMBL:HM595745
EMBL:AJ132261 EMBL:AB023145 EMBL:AL356017 EMBL:AL390254
EMBL:BC150287 IPI:IPI00219036 IPI:IPI00977554 RefSeq:NP_001182502.1
RefSeq:NP_001258211.1 RefSeq:NP_085124.2 RefSeq:NP_803187.1
UniGene:Hs.87889 PDB:2EB1 PDBsum:2EB1 ProteinModelPortal:Q9UPY3
SMR:Q9UPY3 DIP:DIP-29664N IntAct:Q9UPY3 MINT:MINT-1957525
STRING:Q9UPY3 PhosphoSite:Q9UPY3 DMDM:257051056 PaxDb:Q9UPY3
PRIDE:Q9UPY3 Ensembl:ENST00000343455 Ensembl:ENST00000393063
Ensembl:ENST00000526495 Ensembl:ENST00000527414
Ensembl:ENST00000541352 GeneID:23405 KEGG:hsa:23405 UCSC:uc001ydv.2
GeneCards:GC14M095552 HGNC:HGNC:17098 HPA:HPA000694 MIM:138800
MIM:601200 MIM:606241 neXtProt:NX_Q9UPY3 Orphanet:276399
Orphanet:99916 Orphanet:284343 PharmGKB:PA38437 HOVERGEN:HBG107811
InParanoid:Q9UPY3 OMA:FLEYDQE PhylomeDB:Q9UPY3 BRENDA:3.1.26.3
ChiTaRS:DICER1 EvolutionaryTrace:Q9UPY3 GenomeRNAi:23405
NextBio:45577 ArrayExpress:Q9UPY3 Bgee:Q9UPY3 CleanEx:HS_DICER1
Genevestigator:Q9UPY3 GermOnline:ENSG00000100697 GO:GO:0071335
GO:GO:0060576 GO:GO:0021889 GO:GO:0032290 GO:GO:0031643
GO:GO:0014040 GO:GO:0070173 GO:GO:0048713 Uniprot:Q9UPY3
Length = 1922
Score = 121 (47.7 bits), Expect = 7.6e-06, Sum P(4) = 7.6e-06
Identities = 46/164 (28%), Positives = 76/164 (46%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI----YNFFRWFP-DGK-IVFAAPSRP 164
R YQ + + AL NT+V L TG GKT IA ++ Y F +GK VF S
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSAN 104
Query: 165 LVMQQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
V QQ+ A H+ + + + +++ + + + +V +T V +++G
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNGYL 164
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266
+ + LV DE H A ++ Y ++ + P RIL LTA+
Sbjct: 165 SLSDINLLVFDECHLAILDHPYREIMKLCENCPSCPRILGLTAS 208
Score = 97 (39.2 bits), Expect = 7.6e-06, Sum P(4) = 7.6e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
L KFRA N+++ATSI EEG+DI + +LV+ FD +Q GR
Sbjct: 505 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Score = 43 (20.2 bits), Expect = 7.6e-06, Sum P(4) = 7.6e-06
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 940 SKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTAS 983
SKF S + E ++Y + N+ ++ +N+ PLL ++HT+S
Sbjct: 958 SKFPS-PEYETFAEYYKTKY-NLDLTNLNQ----PLLDVDHTSS 995
Score = 38 (18.4 bits), Expect = 7.6e-06, Sum P(4) = 7.6e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 424 IRKVKLLMQQSISHGAQ-----SPKLSKMLEVL 451
+RK+ L ++ S + +PK+ K+LE+L
Sbjct: 352 LRKIHALCEEHFSPASLDLKFVTPKVIKLLEIL 384
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 109 (43.4 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGR-IP 572
L KF+A ++++AT + GLDI VD+VI FD I R+GRT R G+ I
Sbjct: 307 LNKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSIT 366
Query: 573 HIFKPEVQFVELSIEQYVSRGKKV 596
+ + +V+ + IE + GKK+
Sbjct: 367 FVTQYDVELFQ-RIEHLI--GKKL 387
Score = 80 (33.2 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 51/203 (25%), Positives = 82/203 (40%)
Query: 81 EGSSF-DESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALP-TGLGKTL 138
E SF D + V +A W P + V AI AL ++ L TG GKT
Sbjct: 23 EARSFKDLGVTDVLCEACDQLGWKVPTKIQVE----AIP-VALQGRDIIGLAETGSGKTG 77
Query: 139 IAAVVIYNFFRWFPDGKIVFA-APSRPLVMQ---QIEACHNIVGIPQEWTIDMTGQISPT 194
A+ I P P+R L Q Q EA + +G+ + + G S +
Sbjct: 78 AFALPILQALLDAPQRLFALVLTPTRELAFQISEQFEALGSSIGVHS--AVIVGGIDSMS 135
Query: 195 KRASFWKTKRVFFVTPQVLEKDIQSGTCL-MKYLVCLVIDEAHRATGNYAYCTAIRELMS 253
+ + K + TP L +++ ++ L LV+DEA R N + T + +++
Sbjct: 136 QSLALAKKPHIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRIL-NMDFETEVDKILK 194
Query: 254 V-PVQLRILALTATPGSKQQTIQ 275
V P + +AT + Q +Q
Sbjct: 195 VIPRDRKTFLFSATMTKQVQKLQ 217
>UNIPROTKB|I3L840 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025310 Uniprot:I3L840
Length = 667
Score = 103 (41.3 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 31/118 (26%), Positives = 55/118 (46%)
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH---IFKPEVQF 581
+++ T + GLDI EVD ++ +D P I R+GRT R +GR H I +PE
Sbjct: 475 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE--- 530
Query: 582 VELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYF-HPTSDSTWRPSLIAF 638
EL +Y+ + K + + + + E + YF H ++ ++ + A+
Sbjct: 531 -ELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAY 587
Score = 90 (36.7 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 41/159 (25%), Positives = 70/159 (44%)
Query: 127 LVALPTGLGKTL---IAAVVIYNFFRWFP-DGK-IVFAAPSRPLVMQQIEACHNIVGIP- 180
L A TG GKTL I AV + R+ P +G ++ +P+R L MQ ++
Sbjct: 217 LAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHV 276
Query: 181 QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM-KYLVCLVIDEAHRAT 239
+ + M G + + TP L +Q+ M K L CLVIDEA R
Sbjct: 277 HTYGLIMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRIL 336
Query: 240 GNYAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQHI 277
+ + +++++ + P + + + +AT K + + I
Sbjct: 337 -DVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARI 374
>UNIPROTKB|F1RY13 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
Length = 671
Score = 103 (41.3 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 31/118 (26%), Positives = 55/118 (46%)
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH---IFKPEVQF 581
+++ T + GLDI EVD ++ +D P I R+GRT R +GR H I +PE
Sbjct: 479 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE--- 534
Query: 582 VELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYF-HPTSDSTWRPSLIAF 638
EL +Y+ + K + + + + E + YF H ++ ++ + A+
Sbjct: 535 -ELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAY 591
Score = 90 (36.7 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 41/159 (25%), Positives = 70/159 (44%)
Query: 127 LVALPTGLGKTL---IAAVVIYNFFRWFP-DGK-IVFAAPSRPLVMQQIEACHNIVGIP- 180
L A TG GKTL I AV + R+ P +G ++ +P+R L MQ ++
Sbjct: 221 LAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHV 280
Query: 181 QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM-KYLVCLVIDEAHRAT 239
+ + M G + + TP L +Q+ M K L CLVIDEA R
Sbjct: 281 HTYGLIMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRIL 340
Query: 240 GNYAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQHI 277
+ + +++++ + P + + + +AT K + + I
Sbjct: 341 -DVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARI 378
>UNIPROTKB|I3L7B7 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
Length = 696
Score = 103 (41.3 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 31/118 (26%), Positives = 55/118 (46%)
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH---IFKPEVQF 581
+++ T + GLDI EVD ++ +D P I R+GRT R +GR H I +PE
Sbjct: 504 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE--- 559
Query: 582 VELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYF-HPTSDSTWRPSLIAF 638
EL +Y+ + K + + + + E + YF H ++ ++ + A+
Sbjct: 560 -ELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAY 616
Score = 90 (36.7 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 41/159 (25%), Positives = 70/159 (44%)
Query: 127 LVALPTGLGKTL---IAAVVIYNFFRWFP-DGK-IVFAAPSRPLVMQQIEACHNIVGIP- 180
L A TG GKTL I AV + R+ P +G ++ +P+R L MQ ++
Sbjct: 246 LAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHV 305
Query: 181 QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM-KYLVCLVIDEAHRAT 239
+ + M G + + TP L +Q+ M K L CLVIDEA R
Sbjct: 306 HTYGLIMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRIL 365
Query: 240 GNYAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQHI 277
+ + +++++ + P + + + +AT K + + I
Sbjct: 366 -DVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARI 403
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 106 (42.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGRIPH 573
+ +FR G N+++AT + G+D+ ++ VI FD S + R+GRTGR G
Sbjct: 289 ISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAIS 348
Query: 574 IFKPEVQFVELSIEQYVSRGKKVKDDHAITT----PIFKEK 610
+ + Q + +E+Y+ K + + P+FK+K
Sbjct: 349 LVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKK 389
Score = 81 (33.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 32/121 (26%), Positives = 52/121 (42%)
Query: 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGK-----IVFAAPSRPLVMQQIEACHNIVGI 179
+ L + PTG GKT + + FP K I+ P+R L MQ E +
Sbjct: 42 DVLASAPTGTGKTAAFVIPALQYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKN 101
Query: 180 PQEWTIDMTGQISPTKRASFWKTKR-VFFVTP-QVLEK-DIQSGTCLMKYLVCLVIDEAH 236
+ +TG + + A T + + TP ++LE D + C + + L++DEA
Sbjct: 102 TRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDC--RAIEWLILDEAD 159
Query: 237 R 237
R
Sbjct: 160 R 160
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 106 (42.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGRIPH 573
+ +FR G N+++AT + G+D+ ++ VI FD S + R+GRTGR G
Sbjct: 289 ISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAIS 348
Query: 574 IFKPEVQFVELSIEQYVSRGKKVKDDHAITT----PIFKEK 610
+ + Q + +E+Y+ K + + P+FK+K
Sbjct: 349 LVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKK 389
Score = 81 (33.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 32/121 (26%), Positives = 52/121 (42%)
Query: 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGK-----IVFAAPSRPLVMQQIEACHNIVGI 179
+ L + PTG GKT + + FP K I+ P+R L MQ E +
Sbjct: 42 DVLASAPTGTGKTAAFVIPALQYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKN 101
Query: 180 PQEWTIDMTGQISPTKRASFWKTKR-VFFVTP-QVLEK-DIQSGTCLMKYLVCLVIDEAH 236
+ +TG + + A T + + TP ++LE D + C + + L++DEA
Sbjct: 102 TRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDC--RAIEWLILDEAD 159
Query: 237 R 237
R
Sbjct: 160 R 160
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 112 (44.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGR 570
L KF+ G +++VAT + GLDI VDLVI +D + + R+GRT R + GR
Sbjct: 401 LNKFKQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGR 457
Score = 77 (32.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 53/227 (23%), Positives = 90/227 (39%)
Query: 58 KQSTLDKFFGNLGPKPQGTEEFN-EGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFA 116
++ +++F N K EE E +F+ H QI K N P ++ Q
Sbjct: 93 EEKEIEEFINNTNQKKSEEEEKKYENVTFESLGVHPQIIDACNKLGF---NKP-KEIQRE 148
Query: 117 ITKTALFSNTLVALP-TGLGKTLIAAVVIYNFFRWFPDGKIVFA-APSRPLVMQ---QIE 171
AL ++ L TG GKT + + P G A AP+R L Q Q
Sbjct: 149 SIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKLLEAPQGLFCLALAPTRELAYQIADQFN 208
Query: 172 ACHNIVGIPQEWTIDMTGQI-SPTKRASFWKTKRVFFVTP-QVLEKDIQSGTCLMKYLVC 229
A + +G+ T + G I S ++ + K V +P +VL + ++ +
Sbjct: 209 AIGSTIGVK---TCVLVGGIDSMSQSLALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKY 265
Query: 230 LVIDEAHRATGNYAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQ 275
++DEA R + + + ++ V P + +AT SK +Q
Sbjct: 266 FIMDEADRLF-SADFEEEVNNILKVIPKERNTYLFSATMTSKVAKLQ 311
>UNIPROTKB|F1N533 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
Length = 670
Score = 103 (41.3 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 31/118 (26%), Positives = 55/118 (46%)
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH---IFKPEVQF 581
+++ T + GLDI EVD ++ +D P I R+GRT R +GR H I +PE
Sbjct: 478 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE--- 533
Query: 582 VELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYF-HPTSDSTWRPSLIAF 638
EL +Y+ + K + + + + E + YF H ++ ++ + A+
Sbjct: 534 -ELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAY 590
Score = 87 (35.7 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 40/159 (25%), Positives = 70/159 (44%)
Query: 127 LVALPTGLGKTL---IAAVVIYNFFRWFP-DGK-IVFAAPSRPLVMQQIEACHNIVGIP- 180
L A TG GKTL I AV + ++ P +G ++ +P+R L MQ ++
Sbjct: 220 LAAAKTGSGKTLAFLIPAVELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHV 279
Query: 181 QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM-KYLVCLVIDEAHRAT 239
+ + M G + + TP L +Q+ M K L CLVIDEA R
Sbjct: 280 HTYGLIMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRIL 339
Query: 240 GNYAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQHI 277
+ + +++++ + P + + + +AT K + + I
Sbjct: 340 -DVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARI 377
>UNIPROTKB|F1MSX0 [details] [associations]
symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
Length = 674
Score = 103 (41.3 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 31/118 (26%), Positives = 55/118 (46%)
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH---IFKPEVQF 581
+++ T + GLDI EVD ++ +D P I R+GRT R +GR H I +PE
Sbjct: 482 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE--- 537
Query: 582 VELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYF-HPTSDSTWRPSLIAF 638
EL +Y+ + K + + + + E + YF H ++ ++ + A+
Sbjct: 538 -ELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAY 594
Score = 87 (35.7 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 40/159 (25%), Positives = 70/159 (44%)
Query: 127 LVALPTGLGKTL---IAAVVIYNFFRWFP-DGK-IVFAAPSRPLVMQQIEACHNIVGIP- 180
L A TG GKTL I AV + ++ P +G ++ +P+R L MQ ++
Sbjct: 224 LAAAKTGSGKTLAFLIPAVELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHV 283
Query: 181 QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM-KYLVCLVIDEAHRAT 239
+ + M G + + TP L +Q+ M K L CLVIDEA R
Sbjct: 284 HTYGLIMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRIL 343
Query: 240 GNYAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQHI 277
+ + +++++ + P + + + +AT K + + I
Sbjct: 344 -DVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARI 381
>UNIPROTKB|A0MQH0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:10029
"Cricetulus griseus" [GO:0016442 "RNA-induced silencing complex"
evidence=ISS] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EF031271 RefSeq:NP_001231198.1
ProteinModelPortal:A0MQH0 SMR:A0MQH0 GeneID:100689239
Uniprot:A0MQH0
Length = 1917
Score = 123 (48.4 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 45/164 (27%), Positives = 74/164 (45%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF-----PDGK-IVFAAPSRP 164
R YQ + + AL NT+V L TG GKT IA ++ P K VF S
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPRAKRTVFLVNSAN 104
Query: 165 LVMQQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
V QQ+ A H+ + + + +++ + + + + +V +T V +++G
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWSQEFTKHQVLIMTCYVALNVLKNGYL 164
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266
+ + LV DE H A ++ Y ++ S P RIL LTA+
Sbjct: 165 SLSDINLLVFDECHLAILDHPYREIMKLCESCPSCPRILGLTAS 208
Score = 96 (38.9 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
L KFRA N+++ATS+ EEG+DI + +LV+ FD +Q GR
Sbjct: 505 LRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Score = 43 (20.2 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 940 SKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTAS 983
SKF S + E ++Y + N+ ++ +N+ PLL ++HT+S
Sbjct: 958 SKFPS-PEYETFAEYYKTKY-NLDLTNLNQ----PLLDVDHTSS 995
Score = 39 (18.8 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 424 IRKVKLLMQQSISHGAQ-----SPKLSKMLEVL 451
+RK+ L ++ S + +PK+ K+LE+L
Sbjct: 352 LRKIHALCEEHFSPASLDLKYVTPKVMKLLEIL 384
Score = 37 (18.1 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 676 DRTFVEDEVSSDKHLGLQTVE 696
D TF+ED S+ +G+ + +
Sbjct: 893 DFTFMEDIEKSEARIGIPSTK 913
>UNIPROTKB|E2RFA3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
Uniprot:E2RFA3
Length = 669
Score = 100 (40.3 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 31/118 (26%), Positives = 54/118 (45%)
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH---IFKPEVQF 581
+++ T + GLDI EVD ++ +D P I R+GRT R +GR H I PE
Sbjct: 477 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILHPE--- 532
Query: 582 VELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYF-HPTSDSTWRPSLIAF 638
EL +Y+ + K + + + + E + YF H ++ ++ + A+
Sbjct: 533 -ELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAY 589
Score = 90 (36.7 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 40/159 (25%), Positives = 70/159 (44%)
Query: 127 LVALPTGLGKTL---IAAVVIYNFFRWFP-DGK-IVFAAPSRPLVMQQIEACHNIVGIP- 180
L A TG GKTL I AV + ++ P +G ++ +P+R L MQ ++
Sbjct: 219 LAAAKTGSGKTLAFLIPAVELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMMYHV 278
Query: 181 QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM-KYLVCLVIDEAHRAT 239
+ + M G + + TP L +Q+ M K L CLVIDEA R
Sbjct: 279 HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRIL 338
Query: 240 GNYAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQHI 277
+ + +++++ + P + + + +AT K + + I
Sbjct: 339 -DVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARI 376
>MGI|MGI:2177178 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10090
"Mus musculus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IMP] [GO:0001932 "regulation of protein phosphorylation"
evidence=IMP] [GO:0001942 "hair follicle development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=ISO;ISA;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005793 "endoplasmic reticulum-Golgi
intermediate compartment" evidence=ISO] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0008593 "regulation of Notch signaling pathway" evidence=IC]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0010070
"zygote asymmetric cell division" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0010626 "negative
regulation of Schwann cell proliferation" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0014040
"positive regulation of Schwann cell differentiation" evidence=IMP]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IMP] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IMP] [GO:0021675 "nerve development"
evidence=IMP] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IMP] [GO:0021987 "cerebral cortex
development" evidence=IMP] [GO:0030324 "lung development"
evidence=IMP] [GO:0030326 "embryonic limb morphogenesis"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO;IDA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0030426 "growth cone" evidence=ISO] [GO:0031047 "gene silencing
by RNA" evidence=IEA] [GO:0031054 "pre-miRNA processing"
evidence=ISO;IDA] [GO:0031069 "hair follicle morphogenesis"
evidence=IMP] [GO:0031641 "regulation of myelination" evidence=IMP]
[GO:0031643 "positive regulation of myelination" evidence=IMP]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP] [GO:0035198 "miRNA binding"
evidence=IDA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=IMP] [GO:0042981 "regulation of
apoptotic process" evidence=IMP] [GO:0043066 "negative regulation
of apoptotic process" evidence=IMP] [GO:0045069 "regulation of
viral genome replication" evidence=IMP] [GO:0045595 "regulation of
cell differentiation" evidence=IMP] [GO:0045664 "regulation of
neuron differentiation" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048536 "spleen development" evidence=IMP] [GO:0048565
"digestive tract development" evidence=IMP] [GO:0048713 "regulation
of oligodendrocyte differentiation" evidence=IMP] [GO:0048730
"epidermis morphogenesis" evidence=IMP] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IMP] [GO:0048812
"neuron projection morphogenesis" evidence=IMP] [GO:0050767
"regulation of neurogenesis" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0051726 "regulation of cell cycle" evidence=IMP]
[GO:0055013 "cardiac muscle cell development" evidence=IMP]
[GO:0060119 "inner ear receptor cell development" evidence=IMP]
[GO:0060253 "negative regulation of glial cell proliferation"
evidence=IMP] [GO:0060576 "intestinal epithelial cell development"
evidence=IGI] [GO:0070173 "regulation of enamel mineralization"
evidence=IMP] [GO:0071335 "hair follicle cell proliferation"
evidence=IMP] [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 MGI:MGI:2177178 GO:GO:0005524
GO:GO:0010070 GO:GO:0005737 GO:GO:0006915 GO:GO:0021987
GO:GO:0043066 GO:GO:0045664 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 GO:GO:0001932 GO:GO:0016075 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 GO:GO:0010626
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
HOVERGEN:HBG107811 GO:GO:0071335 GO:GO:0060576 GO:GO:0021889
GO:GO:0032290 GO:GO:0031643 GO:GO:0014040 GO:GO:0070173
GO:GO:0048713 EMBL:AF484523 EMBL:AF484524 EMBL:AB081470
EMBL:AF430845 IPI:IPI00227881 UniGene:Mm.21135 PDB:3C4B PDB:3C4T
PDBsum:3C4B PDBsum:3C4T ProteinModelPortal:Q8R418 SMR:Q8R418
DIP:DIP-29721N IntAct:Q8R418 STRING:Q8R418 PhosphoSite:Q8R418
PaxDb:Q8R418 PRIDE:Q8R418 UCSC:uc007oxi.1 InParanoid:Q8R419
EvolutionaryTrace:Q8R418 CleanEx:MM_DICER1 Genevestigator:Q8R418
GermOnline:ENSMUSG00000041415 GO:GO:0060119 GO:GO:2000630
GO:GO:0008593 Uniprot:Q8R418
Length = 1916
Score = 122 (48.0 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 45/164 (27%), Positives = 74/164 (45%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF-----PDGK-IVFAAPSRP 164
R YQ + + AL NT+V L TG GKT IA ++ P K VF S
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVNSAN 104
Query: 165 LVMQQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
V QQ+ A H+ + + + +++ + + + + +V +T V +++G
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLKNGYL 164
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266
+ + LV DE H A ++ Y ++ S P RIL LTA+
Sbjct: 165 SLSDINLLVFDECHLAILDHPYREIMKLCESCPSCPRILGLTAS 208
Score = 96 (38.9 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
L KFRA N+++ATS+ EEG+DI + +LV+ FD +Q GR
Sbjct: 505 LRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Score = 45 (20.9 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 912 PINENGASNNKGRNPDLASPV 932
P ENG+S K + A+PV
Sbjct: 1601 PAQENGSSQQKSLSGSCAAPV 1621
Score = 43 (20.2 bits), Expect = 2.8e-05, Sum P(5) = 2.8e-05
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 940 SKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTAS 983
SKF S + E ++Y + N+ ++ +N+ PLL ++HT+S
Sbjct: 958 SKFPS-PEYETFAEYYKTKY-NLDLTNLNQ----PLLDVDHTSS 995
Score = 38 (18.4 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 424 IRKVKLLMQQSISHGAQ-----SPKLSKMLEVL 451
+RK+ L ++ S + +PK+ K+LE+L
Sbjct: 352 LRKIHALCEEYFSPASLDLKYVTPKVMKLLEIL 384
Score = 37 (18.1 bits), Expect = 1.8e-05, Sum P(5) = 1.8e-05
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 800 KNYDELTVQSKAVEELTTSQAACIKDGA 827
K+++E KA+E++ ++ + DGA
Sbjct: 570 KSFEEDLKTYKAIEKILRNKCSKSADGA 597
>FB|FBgn0034246 [details] [associations]
symbol:Dcr-2 "Dicer-2" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS;NAS] [GO:0003725
"double-stranded RNA binding" evidence=IEA;ISS;NAS] [GO:0016246
"RNA interference" evidence=IMP;NAS;IDA;TAS] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IMP;IDA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0035087 "siRNA
loading onto RISC involved in RNA interference" evidence=IMP]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006342 "chromatin
silencing" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0006379 "mRNA cleavage" evidence=IMP] [GO:0009597 "detection of
virus" evidence=IMP] [GO:0016442 "RNA-induced silencing complex"
evidence=IDA] [GO:0070868 "heterochromatin organization involved in
chromatin silencing" evidence=IMP] [GO:0007626 "locomotory
behavior" evidence=IMP] [GO:0035197 "siRNA binding" evidence=IDA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270
Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE013599 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0007626 GO:GO:0016887 GO:GO:0051607 GO:GO:0003725
GO:GO:0004386 GO:GO:0035197 GO:GO:0016442 GO:GO:0033227
GO:GO:0070868 GO:GO:0030422 GO:GO:0035087 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0006379 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 GO:GO:0009597
EMBL:BT128787 RefSeq:NP_523778.2 UniGene:Dm.7764 SMR:A1ZAW0
DIP:DIP-54444N IntAct:A1ZAW0 STRING:A1ZAW0
EnsemblMetazoa:FBtr0086904 GeneID:36993 KEGG:dme:Dmel_CG6493
UCSC:CG6493-RA CTD:36993 FlyBase:FBgn0034246 InParanoid:A1ZAW0
OrthoDB:EOG4DJHB9 GenomeRNAi:36993 NextBio:801402 Uniprot:A1ZAW0
Length = 1722
Score = 115 (45.5 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 50/196 (25%), Positives = 79/196 (40%)
Query: 106 VNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--P---DGK-IVFA 159
V + R YQ + SN +V LPTG GKT +A +V+ F + F P GK +F
Sbjct: 4 VEIKPRGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGGKRALFM 63
Query: 160 APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW----KTKRVFFVTPQVLEK 215
+ L QQ A + + G T+ W K +V T QV
Sbjct: 64 CNTVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTR--GMWSDEIKKNQVLVGTAQVFLD 121
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS--KQQT 273
+ + L ++IDE H TG++ + +R L ++ Q ++ + G K
Sbjct: 122 MVTQTYVALSSLSVVIIDECHHGTGHHPFREFMR-LFTIANQTKLPRVVGLTGVLIKGNE 180
Query: 274 IQHIIDNLYISTLEYR 289
I ++ L + YR
Sbjct: 181 ITNVATKLKELEITYR 196
Score = 83 (34.3 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 40/171 (23%), Positives = 76/171 (44%)
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDI----MNALATIGDL--VKATEF 494
+PK+ + L L F KDPK ++F R + + I +N + + +L V +F
Sbjct: 364 TPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYIQSTPELRNVLTPQF 423
Query: 495 IXXXXXXXXXXXXXXXXX---XXLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
+ +++FR G N+++ +S+ EEG+D+ + V D V
Sbjct: 424 MVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGIDVQACNHVFILDP-V 482
Query: 552 SPLRM-IQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKDDHA 601
M +Q GR R + + +F + + E +I+Q + + +K +D A
Sbjct: 483 KTFNMYVQSKGRA-RTTEAKFV-LFTADKER-EKTIQQ-IYQYRKAHNDIA 529
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 104 (41.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGRIPH 573
++ FR G + +VAT + G+DI + VI +D + + R GRTGR + G+
Sbjct: 285 MDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAIT 344
Query: 574 IFKP-EVQFVELSIEQYV 590
P E +F+E IE Y+
Sbjct: 345 FITPYEDRFLE-EIEAYI 361
Score = 81 (33.6 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 41/161 (25%), Positives = 68/161 (42%)
Query: 112 DYQFAITKTALFSNTLVALP-TGLGKTLIAAVVIYNFFRWFPDG-KIVFAAPSRPLVMQQ 169
+ Q + AL LV TG GKT + + W + + + P+R L +Q
Sbjct: 29 EVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQV 88
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFV--TP-QVLEKDIQSGTCLMKY 226
E NI + + G+ SP R ++ V TP +VL+ I+ GT ++
Sbjct: 89 KEDITNIGRFKRIKAAAIYGK-SPFARQKLELKQKTHIVVGTPGRVLDH-IEKGTLSLER 146
Query: 227 LVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTAT 266
L LVIDEA N + + ++ +P + + +AT
Sbjct: 147 LKYLVIDEADEML-NMGFIDQVEAIIDELPTKRMTMLFSAT 186
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 104 (41.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGRIPH 573
++ FR G + +VAT + G+DI + VI +D + + R GRTGR + G+
Sbjct: 285 MDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAIT 344
Query: 574 IFKP-EVQFVELSIEQYV 590
P E +F+E IE Y+
Sbjct: 345 FITPYEDRFLE-EIEAYI 361
Score = 81 (33.6 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 41/161 (25%), Positives = 68/161 (42%)
Query: 112 DYQFAITKTALFSNTLVALP-TGLGKTLIAAVVIYNFFRWFPDG-KIVFAAPSRPLVMQQ 169
+ Q + AL LV TG GKT + + W + + + P+R L +Q
Sbjct: 29 EVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQV 88
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFV--TP-QVLEKDIQSGTCLMKY 226
E NI + + G+ SP R ++ V TP +VL+ I+ GT ++
Sbjct: 89 KEDITNIGRFKRIKAAAIYGK-SPFARQKLELKQKTHIVVGTPGRVLDH-IEKGTLSLER 146
Query: 227 LVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTAT 266
L LVIDEA N + + ++ +P + + +AT
Sbjct: 147 LKYLVIDEADEML-NMGFIDQVEAIIDELPTKRMTMLFSAT 186
>UNIPROTKB|F1PZZ3 [details] [associations]
symbol:NEFH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005882 "intermediate filament" evidence=IEA]
GO:GO:0005882 GeneTree:ENSGT00690000102043 InterPro:IPR016044
InterPro:IPR018039 Pfam:PF00038 PROSITE:PS00226 InterPro:IPR010790
Pfam:PF07142 EMBL:AAEX03014791 Ensembl:ENSCAFT00000035381
Uniprot:F1PZZ3
Length = 1061
Score = 139 (54.0 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 75/302 (24%), Positives = 130/302 (43%)
Query: 789 KQDSSP--LKTSDKNYDELTVQSKAVEELTTSQAACIKDGALPISRFCRSDALPEKPLDG 846
++ SP +K+ +K + ++K+ E+ + + A K A ++ PEK
Sbjct: 534 EEAKSPAEVKSPEKAKSPMKEEAKSPTEVKSPEKA--KSPAKEEAKSPVEAKSPEKAKSP 591
Query: 847 FEEILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDDEYHNDLRDSELSPRLTNLIKSG 906
+E SP ++ ++EE + E + +KE ++ + +++ SP + KS
Sbjct: 592 VKEEAKSPEKAKSPVKEEAKSPEKAK-SPVKEEAKSPEKAKSPVKEEAKSP-VKEEAKSP 649
Query: 907 VVPESPINENGASNNKGRNPDLA-SPVKLCSIQPSKFASLGKTEKCSKYVRASQGNVSIS 965
+SP+ E S K ++P+ A SPVK + P K S K E A + S
Sbjct: 650 EKTKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPVKEE-------AKSPEKAKS 702
Query: 966 PVNKKIQTPLLKMNHTASAGGYSPT---SPIAEETKTPLANLANSSCSRDWRLSSGDKSE 1022
PV ++ ++P K SP SP+ EE K+P A S + + KS
Sbjct: 703 PVKEEAKSPEKKAKSPVKEEAKSPEKAKSPVKEEAKSP--EKAKSPVKEEAKSPEKAKSP 760
Query: 1023 NVEPARKFKRLRK-VRDCEQNKNSENMK--ENAVAPVVNLARRFLGMSPIQNKHGRGRKK 1079
E A+ ++ + V+ E+ K+ E K E A +PV A+ SP + K K
Sbjct: 761 VKEEAKSPEKAKSPVK--EEAKSPEKAKSPEKAKSPVKEEAK-----SPEKAKSPEKAKS 813
Query: 1080 PM 1081
P+
Sbjct: 814 PV 815
Score = 128 (50.1 bits), Expect = 0.00050, P = 0.00050
Identities = 73/309 (23%), Positives = 132/309 (42%)
Query: 767 PFKELSHSKKK-RAPDTLLLNHWKQDSSPLKTSDKNYDELTVQSKAVEELTTSQAACIKD 825
P K S K++ ++P+ ++ SP+K K+ ++ +S EE + + A +
Sbjct: 613 PEKAKSPVKEEAKSPEKAKSPVKEEAKSPVKEEAKSPEK--TKSPVKEEAKSPEKAKSPE 670
Query: 826 GAL-PISRFCRSDALPEKPLDGFEEILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDD 884
A P+ +S PEK +E SP ++ ++EE + E + +KE +
Sbjct: 671 KAKSPVKEEAKS---PEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKKAKSPVKEEAKSPE 727
Query: 885 EYHNDLRDSELSP-RLTNLIKSGVV-PE---SPINENGASNNKGRNP---DLASPVKLCS 936
+ + +++ SP + + +K PE SP+ E S K ++P + SP K S
Sbjct: 728 KAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKS 787
Query: 937 IQPSKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTASAGGYSPTSPIAEE 996
P K S K E S +A + SPV ++ ++P + SP+ EE
Sbjct: 788 --PEKAKSPVKEEAKSPE-KAKSPEKAKSPVKEEAKSP------EKAKSPEKVKSPVKEE 838
Query: 997 TKTPLANLANSSCSRDWRLSSGDKSENV---EPARKFKRLR-----KVRDCEQNKNSENM 1048
TK P + ++ + +K + V EPA+K + + K + + +K E
Sbjct: 839 TKAPEKEVTKKEEAKS-PIKEEEKPQEVKVKEPAKKAEEEKAPATPKTEEKKDSKKDEVP 897
Query: 1049 KENAVAPVV 1057
K+ A P V
Sbjct: 898 KKEAPKPEV 906
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 97 (39.2 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
+E+F+ G V+VAT + GLDI ++ VI FD I R+GRTGR
Sbjct: 300 IERFKKGEVKVLVATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGR 350
Score = 87 (35.7 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 47/225 (20%), Positives = 93/225 (41%)
Query: 109 PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK-----IVFAAPSR 163
P + I + + + L + PTG GKT + I +P K ++ P+R
Sbjct: 36 PTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQHLLDYPRTKPGFPRVLILTPTR 95
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-KTKRVFFVTPQVLEKDIQSGTC 222
L +Q E + + + T +TG ++ A T + TP L + I++
Sbjct: 96 ELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTSTTDILVATPGRLLEYIENEQF 155
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP---VQLRILALTA-TPGSKQQTIQHII 278
+ + LV+DEA R + + I +++ Q + + T +PG + + +
Sbjct: 156 DAREIEILVLDEADRML-DLGFSETINRIVAEARWRKQTMLFSATLESPGVQLFAEEVLN 214
Query: 279 DNLYISTLEYRNESDQDVSSYVH-----NRKIELIEVEMGQEAVE 318
+ +++ + R E + ++H N K+ L+ + QE VE
Sbjct: 215 EPVFLESKPSRKEKAV-IHQWLHLADDANHKLNLLVNTLKQEGVE 258
Score = 41 (19.5 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 800 KNYDELTVQSKAVEELTTSQ 819
KN + V KA +LTTSQ
Sbjct: 391 KNKESRVVNKKAKIKLTTSQ 410
>UNIPROTKB|B3DLA6 [details] [associations]
symbol:dicer1 "Endoribonuclease Dicer" species:8364
"Xenopus (Silurana) tropicalis" [GO:0016442 "RNA-induced silencing
complex" evidence=ISS] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EU338242 EMBL:BC167373 RefSeq:NP_001123390.2
UniGene:Str.39540 STRING:B3DLA6 GeneID:100170154 KEGG:xtr:100170154
Xenbase:XB-GENE-491114 Uniprot:B3DLA6
Length = 1893
Score = 115 (45.5 bits), Expect = 4.4e-05, Sum P(4) = 4.4e-05
Identities = 46/164 (28%), Positives = 72/164 (43%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI----YNFFRWFPDG--KIVFAAPSRP 164
R YQ + + AL NT+V L +G GKT IA ++ Y F + VF S
Sbjct: 35 RKYQVELLEAALDHNTIVCLNSGSGKTFIAVLLSKELSYQIRGDFSKNTKRTVFLVNSEK 94
Query: 165 LVMQQIEACHNIVGIPQ-EWTIDMTGQISPTKRASF-WKTKRVFFVTPQVLEKDIQSGTC 222
V QQ+ A + E++ Q +R ++T +V +T + ++SG
Sbjct: 95 QVSQQVSAVRTHTDLKVGEYSDQEKTQCWAKERWYLEFETHQVLVMTCHIFLNVLKSGNV 154
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266
+ + LV DE H A ++ Y ++ S RIL LTA+
Sbjct: 155 SLSNINLLVFDECHLAIQDHPYREIMKICESCQPCPRILGLTAS 198
Score = 95 (38.5 bits), Expect = 4.4e-05, Sum P(4) = 4.4e-05
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
L KFRA N+++ATSI EEG+DI + +LV+ FD +Q GR
Sbjct: 496 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQSKGR 543
Score = 43 (20.2 bits), Expect = 4.4e-05, Sum P(4) = 4.4e-05
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 940 SKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTAS 983
SKF S + E ++Y + N+ ++ +N+ PLL ++HT+S
Sbjct: 952 SKFPS-PEYETFAEYYKTKY-NLDLTNLNQ----PLLDVDHTSS 989
Score = 38 (18.4 bits), Expect = 4.4e-05, Sum P(4) = 4.4e-05
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 424 IRKVKLLMQQSISHGAQ-----SPKLSKMLEVL 451
+RK+ L ++ S + +PK+ K+LE+L
Sbjct: 342 LRKIHALCEEHFSPASLDMKFVTPKVIKLLEIL 374
>FB|FBgn0025140 [details] [associations]
symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
[GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
Length = 680
Score = 98 (39.6 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 39/157 (24%), Positives = 71/157 (45%)
Query: 129 ALPTGLGKTL---IAAVVIYNFFRWFP-DGK-IVFAAPSRPLVMQQIEACHNIVGIPQE- 182
A TG GKTL I AV + N R+ P +G ++ +P+R L MQ ++
Sbjct: 230 AAQTGSGKTLAFLIPAVELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHT 289
Query: 183 WTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ-SGTCLMKYLVCLVIDEAHRATGN 241
+ + M G + K + TP L +Q S L K L CL+IDE R
Sbjct: 290 YGLVMGGSNRQVESEKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRIL-E 348
Query: 242 YAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQHI 277
+ +++++++ P + + + +AT ++ + + +
Sbjct: 349 IGFEEELKQIINLLPKRRQTMLFSATQTARIEALSKL 385
Score = 87 (35.7 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH--DGRIPHIFKPEVQFV 582
+++ T + GLDI +VD ++ +D P I R+GRT R G + +PE
Sbjct: 486 ILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPE---- 541
Query: 583 ELSIEQYVSRGK 594
EL +Y+ K
Sbjct: 542 ELGFLRYLKAAK 553
>UNIPROTKB|Q9NVP1 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
Uniprot:Q9NVP1
Length = 670
Score = 99 (39.9 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 526 IVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH---IFKPEVQFV 582
++ T + GLDI EVD ++ +D P I R+GRT R +GR H I +PE
Sbjct: 479 LLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE---- 533
Query: 583 ELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYF-HPTSDSTWRPSLIAF 638
EL +Y+ + K + + + + E + YF H ++ ++ + A+
Sbjct: 534 ELGFLRYLKQSKVPLSEFDFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAY 590
Score = 92 (37.4 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 41/159 (25%), Positives = 70/159 (44%)
Query: 127 LVALPTGLGKTL---IAAVVIYNFFRWFP-DGK-IVFAAPSRPLVMQQIEACHNIVGIP- 180
L A TG GKTL I AV + R+ P +G ++ +P+R L MQ ++
Sbjct: 220 LAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHV 279
Query: 181 QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM-KYLVCLVIDEAHRAT 239
+ + M G + + TP L +Q+ M K L CLVIDEA R
Sbjct: 280 HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRIL 339
Query: 240 GNYAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQHI 277
+ + +++++ + P + + + +AT K + + I
Sbjct: 340 -DVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARI 377
Score = 38 (18.4 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 21 EAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLGPKPQGTEEFN 80
+ AV I +S + ST TN +++ S K+ K + P + + N
Sbjct: 75 QEAVGNIKVT-KSPQKSTV-LTNGEAAMQSSNSESKKKKKKKRKMVNDAEPDTKKAKTEN 132
Query: 81 EGSSFDES 88
+G S +ES
Sbjct: 133 KGKSEEES 140
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 112 (44.5 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 48/179 (26%), Positives = 71/179 (39%)
Query: 416 RFMSKNEDIR-KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS 474
RFM++ E ++ K K + +I + K + L + P+ + I+F +
Sbjct: 196 RFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELA--IVFGRTKRR 253
Query: 475 VRDIMNALATIGDLVKATEFIXXXXXXXXXXXXXXXXXXXLEKFRAGGYNVIVATSIGEE 534
V ++ AL G A E I L KF+ G V+VAT +
Sbjct: 254 VDELAEALNLRG---YAAEGIHGDLTQAKRMVA-------LRKFKEGAIEVLVATDVAAR 303
Query: 535 GLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGRIPHIFKPEVQFVELSIEQYVSR 592
GLDI V V FD P + R+GRTGR G P + + +IEQ R
Sbjct: 304 GLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKR 362
Score = 68 (29.0 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 35/139 (25%), Positives = 58/139 (41%)
Query: 132 TGLGKTLIAAV-VIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTG- 189
TG GKT + ++ P+ + + AP+R L +Q E + I + + + G
Sbjct: 49 TGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGG 108
Query: 190 -QISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAI 248
I RA K + TP L I T + + +V+DEA N + I
Sbjct: 109 QDIGRQIRA-LKKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEML-NMGFIDDI 166
Query: 249 RELMS-VPVQLRILALTAT 266
++S VP + + L +AT
Sbjct: 167 ESILSNVPSEHQTLLFSAT 185
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 100 (40.3 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH---IFKPEVQF 581
+++ T + GLDI EVD ++ +D P I R+GRT R +GR H I +PE
Sbjct: 468 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE--- 523
Query: 582 VELSIEQYVSRGK 594
EL +Y+ + K
Sbjct: 524 -ELGFLRYLKQSK 535
Score = 83 (34.3 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 41/180 (22%), Positives = 78/180 (43%)
Query: 127 LVALPTGLGKTLIAAVVIYNFF---RWFP-DGK-IVFAAPSRPLVMQQIEACHNIVGIP- 180
L A TG GKTL + + ++ P +G ++ +P+R L MQ ++
Sbjct: 210 LAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHV 269
Query: 181 QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM-KYLVCLVIDEAHRAT 239
+ + M G + + TP L +Q+ M K L CLVIDEA R
Sbjct: 270 HTYGLIMGGSNRSAEVQKLLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRIL 329
Query: 240 GNYAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSS 298
+ + +++++ + P + + + +AT K + + I +L L + D++V++
Sbjct: 330 -DVGFEEELKQIIKLLPARRQTMLFSATQTRKVEDLARI--SLKKEPLYVGVDDDKEVAT 386
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 103 (41.3 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 51/191 (26%), Positives = 87/191 (45%)
Query: 104 YPVNVPVRDYQFAITKTALFSNTLVALP-TGLGKTL---IAAVVIYNFFRWF--PDGKIV 157
+P P++ + I AL ++ L TG GKTL + ++V N DG IV
Sbjct: 404 FPNPTPIQSQAWPI---ALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDGPIV 460
Query: 158 FA-APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISP-TKRASFWKTKRVFFVTPQVLEK 215
AP+R L +Q E + G Q + G S T+ A+ K + TP L
Sbjct: 461 LVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLID 520
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTI 274
++SG ++ + LV+DEA R + + IR+++S + + L +AT + Q +
Sbjct: 521 ILESGKTNLRRVTYLVLDEADRML-DMGFEPQIRKIISQIRPDRQTLMFSATWPKEVQAL 579
Query: 275 QH--IIDNLYI 283
H + D++ +
Sbjct: 580 AHDFLTDHIQV 590
Score = 80 (33.2 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
L +F+ G +++AT + GLDI ++ V+ +D + I R+GRT R
Sbjct: 672 LSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTAR 722
Score = 47 (21.6 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 37 STSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLGPKPQGTEEFNE--GSS 84
S+S S + N S NK PS+ S+ + GP +G ++F + GSS
Sbjct: 60 SSSGSGSGNGSSSYNKYPSSSSSSSSSSSTSSYGPS-KG-KDFQDSWGSS 107
>UNIPROTKB|J9P515 [details] [associations]
symbol:NEFH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005882 "intermediate filament" evidence=IEA]
GO:GO:0005882 GeneTree:ENSGT00690000102043 InterPro:IPR016044
InterPro:IPR018039 Pfam:PF00038 PROSITE:PS00226 InterPro:IPR010790
Pfam:PF07142 EMBL:AAEX03014791 Ensembl:ENSCAFT00000048856
Uniprot:J9P515
Length = 1135
Score = 135 (52.6 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 75/325 (23%), Positives = 134/325 (41%)
Query: 767 PFKELSHSKKK-RAPDTLLLNHWKQDSSPLKTSDKNYDELTVQSKAVEELTTSQAACIKD 825
P KE + S +K ++P+ ++ SP K +E KA + +A +
Sbjct: 619 PVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVK-EEAKSPEK 677
Query: 826 GALPISRFCRSDAL---PEKPLDGFEEILDSPVLRRNQLREEDTTDETLDVNEIKEPLSP 882
P+ +S PEK +E SP ++ ++EE + E + +KE
Sbjct: 678 TKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAK-SPVKEEAKS 736
Query: 883 DDEYHNDLRDSELSPR-----LTNLIKSGVVPESPINENGASNNKGRNPDLA-SPVKLCS 936
++ + +++ SP + KS P+SP+ E S K ++P+ A SPVK +
Sbjct: 737 PEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKPKSPVKEEAKSPEKAKSPEKAKSPVKEEA 796
Query: 937 IQPSKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTASAGGYSPT---SPI 993
P K S K E A + SPV ++ ++P K SP SP+
Sbjct: 797 KSPEKAKSPVKEE-------AKSPEKAKSPVKEEAKSPE-KAKSPVKEEAKSPEKAKSPV 848
Query: 994 AEETKTPLANLANSSCSRDWR--LSSGDKSENVEPARKFKRLRKVRDCEQNKNSENMK-- 1049
EE K+P + + S +K+++ E A+ + + + E+ K+ E +K
Sbjct: 849 KEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVK-EEAKSPEKAKSPEKVKSP 907
Query: 1050 --ENAVAPVVNLARRFLGMSPIQNK 1072
E AP + ++ SPI+ +
Sbjct: 908 VKEETKAPEKEVTKKEEAKSPIKEE 932
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 91 (37.1 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 36/154 (23%), Positives = 71/154 (46%)
Query: 125 NTLVALPTGLGKTL---IAAVVIYNFFRWFP-DGK-IVFAAPSRPLVMQQIEACHNIV-G 178
+ L + TG GKTL + A+ + + W +G ++ +P+R L MQ ++ G
Sbjct: 107 DVLASAKTGSGKTLAFLLPAIELLHKLNWKQHNGTGVIIVSPTRELSMQTYGVLSELLEG 166
Query: 179 IPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS-GTCLMKYLVCLVIDEAHR 237
+ + M G ++ K + TP L +Q+ L++ + CL+IDEA R
Sbjct: 167 SNLTYGLVMGGSNRSAEKDKLAKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADR 226
Query: 238 ATGNYAYCTAIRELMS-VPVQLRILALTATPGSK 270
+ + +++++ +P Q + + +AT K
Sbjct: 227 IL-DIGFEIEMQQVLRHLPKQRQSMLFSATHSPK 259
Score = 90 (36.7 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR--KHDGRIPHIFKPEVQFV 582
+++ T + GLDI VD ++ +D P I R+GRT R G+ + +PE
Sbjct: 367 ILLCTDVAARGLDIPAVDWIVQYDPTDEPREYIHRVGRTARGTNGSGKALLVLRPE---- 422
Query: 583 ELSIEQYVSRGK 594
EL +Y+ K
Sbjct: 423 ELGFLRYLKAAK 434
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 109 (43.4 bits), Expect = 9.8e-05, Sum P(3) = 9.8e-05
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGRIPH 573
+E FR G N ++AT + GLDI V+ VI ++A S + R+GRT R GR
Sbjct: 586 VESFRDGNVNFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACT 645
Query: 574 IF-KPEVQFVELSIEQYVSRGKKV 596
I +P+ + V+ +++ ++G K+
Sbjct: 646 IAAEPDRKVVKAAVKAGKAQGAKI 669
Score = 80 (33.2 bits), Expect = 9.8e-05, Sum P(3) = 9.8e-05
Identities = 64/278 (23%), Positives = 113/278 (40%)
Query: 9 EINGDDDDEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPST---CKQSTLDKF 65
E N + DDE + E + D A S +T + S+ + + ++ K
Sbjct: 220 EGNDESDDEDEEEGEDDDDDAASDSDSVATPVHHPDDEASEPDSDAESEVDAEEEAKRKA 279
Query: 66 FGNLGPKPQGTEEFNEGS---SFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTA 121
F P+ + E+ S SF E +L + AA + P P++ + A
Sbjct: 280 F--FAPEEKTDEDAATNSAKRSFQEFNLSRPILRGLAAVNFTNPT--PIQQKTIPV---A 332
Query: 122 LFSNTLV-ALPTGLGKTLIAAVVIYN--FFR--WFPDGKIVFAAPSRPLVMQQIEACHNI 176
L +V + TG GKT V I FR P ++ P+R L +Q C+N+
Sbjct: 333 LLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQ----CYNV 388
Query: 177 VGIPQEWTIDMT-----GQISPTKRASFWKTKR-VFFVTP-QVLEKDIQSGTCLMKYLVC 229
+T D+T G S ++ + K + V TP + ++ S + + L
Sbjct: 389 ATKLATYT-DITFCQLVGGFSLREQENVLKKRPDVIIATPGRFIDHMRNSASFTVDTLEI 447
Query: 230 LVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTAT 266
LV+DEA R + + + E+++ +P + + +AT
Sbjct: 448 LVLDEADRMLED-GFADELNEILTTIPKSRQTMLFSAT 484
Score = 41 (19.5 bits), Expect = 9.8e-05, Sum P(3) = 9.8e-05
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 1001 LANLANSSCSRDWRLSSGDKSENVEPARKFKRLRK-VRDCE-QNKNSENM 1048
++ + + S + DW + D E ++ + ++L K + E Q EN+
Sbjct: 670 VSRVVDPSVADDWASKAKDMEEEIDAVLEEEKLEKQLAQAEMQVTKGENL 719
Score = 41 (19.5 bits), Expect = 9.8e-05, Sum P(3) = 9.8e-05
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 1015 LSSGDKSENVEPARKFKRLRKVRDCEQNKNSENMKENAVAPVVNLARRFLGMSPIQNKHG 1074
+ S K E R+ + +K+ E N S+ K + N ++ L + ++ + G
Sbjct: 726 IKSRPKRTWFETEREKRVAKKIGAAELNGPSKKEK----VKLSNKDKKRLDAAKLRQEEG 781
Query: 1075 RGRKK 1079
GRKK
Sbjct: 782 LGRKK 786
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 100 (40.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH---IFKPEVQF 581
+++ T + GLDI EVD ++ +D P I R+GRT R +GR H I +PE
Sbjct: 470 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE--- 525
Query: 582 VELSIEQYVSRGK 594
EL +Y+ + K
Sbjct: 526 -ELGFLRYLKQSK 537
Score = 82 (33.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 41/180 (22%), Positives = 78/180 (43%)
Query: 127 LVALPTGLGKTLIAAVVIYNFF---RWFP-DGK-IVFAAPSRPLVMQQIEACHNIVGIP- 180
L A TG GKTL + + ++ P +G ++ +P+R L MQ ++
Sbjct: 212 LAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHV 271
Query: 181 QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM-KYLVCLVIDEAHRAT 239
+ + M G + + TP L +Q+ M K L CLVIDEA R
Sbjct: 272 HTYGLIMGGSNRSAEVQKLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRIL 331
Query: 240 GNYAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSS 298
+ + +++++ + P + + + +AT K + + I +L L + D++V++
Sbjct: 332 -DVGFEEELKQIIKLLPARRQTMLFSATQTRKVEDLARI--SLKKEPLYVGVDDDKEVAT 388
>UNIPROTKB|F1PNP2 [details] [associations]
symbol:NEFH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005882 "intermediate filament" evidence=IEA]
GO:GO:0005882 GeneTree:ENSGT00690000102043 InterPro:IPR016044
InterPro:IPR018039 Pfam:PF00038 PROSITE:PS00226 InterPro:IPR010790
Pfam:PF07142 OMA:EAKSPGE EMBL:AAEX03014791
Ensembl:ENSCAFT00000019446 Uniprot:F1PNP2
Length = 1143
Score = 134 (52.2 bits), Expect = 0.00012, P = 0.00012
Identities = 75/318 (23%), Positives = 136/318 (42%)
Query: 767 PFKELSHSKKK-RAPDTLLLNHWKQDSSPLKTSDKNYDELTVQSKAVEELTTSQAACIKD 825
P KE + S +K ++P ++ SP+K K+ ++ +S EE + + A +
Sbjct: 647 PVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEK--TKSPVKEEAKSPEKAKSPE 704
Query: 826 GAL-PISRFCRSDALPEKPLDGFEEILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDD 884
A P+ +S PEK +E SP ++ ++EE + E + +KE +
Sbjct: 705 KAKSPVKEEAKS---PEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAK-SPVKEEAKSPE 760
Query: 885 EYHNDLRDSELSPRLTNLIKSGVVPESPINENGASNNKGRNPDLA-SPVKLCSIQPSKFA 943
+ + +++ SP P+SP+ E S K ++P+ A SPVK + P K
Sbjct: 761 KAKSPVKEEAKSPEK---------PKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAK 811
Query: 944 SLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTASAGGYSPT---SPIAEETKTP 1000
S K E A + SPV ++ ++P K SP SP+ EE K+P
Sbjct: 812 SPVKEE-------AKSPEKAKSPVKEEAKSPE-KAKSPVKEEAKSPEKAKSPVKEEAKSP 863
Query: 1001 LANLANSSCSRDWR--LSSGDKSENVEPARKFKRLRKVRDCEQNKNSENMK----ENAVA 1054
+ + S +K+++ E A+ + + + E+ K+ E +K E A
Sbjct: 864 EKAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVK-EEAKSPEKAKSPEKVKSPVKEETKA 922
Query: 1055 PVVNLARRFLGMSPIQNK 1072
P + ++ SPI+ +
Sbjct: 923 PEKEVTKKEEAKSPIKEE 940
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 100 (40.3 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH---IFKPEVQF 581
+++ T + GLDI EVD ++ FD P I R+GRT R +GR H I +PE
Sbjct: 460 ILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGINGR-GHALLILRPE--- 515
Query: 582 VELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAK--YFHPTSDSTWRPSLIAF 638
EL +++ + K + + + + + LI K Y H ++ ++ + A+
Sbjct: 516 -ELGFLRFLKQAKVPLSEFEFSWTKISD-IQSQLDKLIEKNYYLHKSAQEAYKSYVRAY 572
Score = 85 (35.0 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 61/285 (21%), Positives = 115/285 (40%)
Query: 5 KIPIEINGDDDDEFDWEAAVREIDTACQSSKPSTSNSTNFNLCS-KANKKPSTCKQSTLD 63
K ++ G+ +A + +DT Q+S NL + K + + K+ + +
Sbjct: 80 KRKLDATGESTTSSVKKAKKQSVDTT-QASAGEEEQQEEGNLETVKCPENGNNEKEGSAE 138
Query: 64 KFFGNLGPK-PQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVP-VRDYQFAITKTA 121
+ GP+ P G E SF SL V +E + + + + Q +
Sbjct: 139 EDSDEDGPQLPSGLTGAFEDRSF-ASLSEVV--SENTLKGVKEMGFDTMTEIQHKTIRPL 195
Query: 122 LFS-NTLVALPTGLGKTL---IAAVVIYNFFRWFP-DGK-IVFAAPSRPLVMQQIEACHN 175
L + L A TG GKTL I ++ + ++ P +G ++ +P+R L MQ
Sbjct: 196 LEGRDVLAAAKTGSGKTLAFLIPSIELIYKLKFMPRNGTGVIVLSPTRELAMQTYGVLKE 255
Query: 176 IVGIP-QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM-KYLVCLVID 233
++ + + M G + + TP L +Q+ M K L CL+ID
Sbjct: 256 LMTHHVHTYGLIMGGSNRSAEAQKLANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIID 315
Query: 234 EAHRATGNYAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQHI 277
EA R + +++++ + P + + + +AT K + + I
Sbjct: 316 EADRIL-EVGFEEELKQIIKLLPKKRQSMLFSATQTRKVEDLARI 359
Score = 39 (18.8 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 1020 KSENVEPARKFKRLRK 1035
KS+NV A+ FK + K
Sbjct: 628 KSKNVHKAKIFKHVNK 643
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 104 (41.7 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 30/84 (35%), Positives = 45/84 (53%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGR-IP 572
L KF++ +V++AT + GLDI VD VI FD I R+GRT R G+ I
Sbjct: 361 LNKFKSKSRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSIT 420
Query: 573 HIFKPEVQFVELSIEQYVSRGKKV 596
+ + +V+ + IE + GKK+
Sbjct: 421 FVTQYDVELFQ-RIEALI--GKKL 441
Score = 72 (30.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 52/202 (25%), Positives = 83/202 (41%)
Query: 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALP-TGLGKTLIA 140
+SF E + V +A W P + + AI AL ++ L TG GKT
Sbjct: 79 TSFKELGVTEVLCEACDQLGWKKPTKIQIE----AIP-VALQGRDVIGLAETGSGKTGAF 133
Query: 141 AV-VIYNFFRWFPDGKIVFAAPSRPLVMQ---QIEACHNIVGIPQEWTIDMTGQISPTKR 196
AV V+ + + P+R L Q Q +A + +G+ T + G I +
Sbjct: 134 AVPVLQSLLACAQRLHTLVLTPTRELAFQIAEQFDALGSSIGVK---TAVIVGGIDMMSQ 190
Query: 197 ASFWKTK-RVFFVTPQVLEKDIQSGTCL-MKYLVCLVIDEAHRATGNYAYCTAIRELMSV 254
A K V TP L +++ ++ L LV+DEA R N + + + +++ V
Sbjct: 191 ALVLAKKPHVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRIL-NMDFESEVDKILKV 249
Query: 255 -PVQLRILALTATPGSKQQTIQ 275
P R +AT K Q +Q
Sbjct: 250 IPRDRRTFLFSATMTKKVQKLQ 271
>WB|WBGene00000939 [details] [associations]
symbol:dcr-1 species:6239 "Caenorhabditis elegans"
[GO:0004525 "ribonuclease III activity" evidence=IEA;IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016891
"endoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0040010 "positive regulation
of growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006952 "defense response" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0010467 "gene expression"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0045132
"meiotic chromosome segregation" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IMP] [GO:0040034 "regulation of development,
heterochronic" evidence=IMP] [GO:0031050 "dsRNA fragmentation"
evidence=IDA] [GO:0035262 "gonad morphogenesis" evidence=IMP]
[GO:0004530 "deoxyribonuclease I activity" evidence=IDA]
[GO:0000737 "DNA catabolic process, endonucleolytic" evidence=IDA]
[GO:0006401 "RNA catabolic process" evidence=IDA] [GO:0006309
"apoptotic DNA fragmentation" evidence=IGI] [GO:0031054 "pre-miRNA
processing" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005829 GO:GO:0005524 GO:GO:0002009
GO:GO:0018991 GO:GO:0040010 GO:GO:0006952 GO:GO:0002119
GO:GO:0046872 GO:GO:0040011 GO:GO:0006401 GO:GO:0040035
GO:GO:0003725 GO:GO:0045132 SUPFAM:SSF101690 GO:GO:0031054
GO:GO:0030422 GO:GO:0040034 GO:GO:0006309 GO:GO:0016075
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:FO081380
GO:GO:0008026 GO:GO:0035262 eggNOG:COG1111 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PIR:S44849 RefSeq:NP_498761.2
DIP:DIP-25340N IntAct:P34529 MINT:MINT-1040079 STRING:P34529
PaxDb:P34529 EnsemblMetazoa:K12H4.8 GeneID:176138
KEGG:cel:CELE_K12H4.8 UCSC:K12H4.8 CTD:42693 WormBase:K12H4.8
GeneTree:ENSGT00510000046789 HOGENOM:HOG000022395 InParanoid:P34529
NextBio:891290 GO:GO:0004530 Uniprot:P34529
Length = 1910
Score = 108 (43.1 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 50/173 (28%), Positives = 80/173 (46%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI--YNFFRWFP-D--GKIVFAAPSRPL 165
RDYQ + A NT+V L TG GKT IA +++ Y + P D GK F +
Sbjct: 14 RDYQVELLDKATKKNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQGGKRAFFVVEKVN 73
Query: 166 VMQQIEACHNIVGIPQEWTIDMT-GQISP----TKRA--SFWKTKRVFFVTPQVLEKDIQ 218
+++Q +A H + + + + GQ S +K F K V +T Q L I+
Sbjct: 74 LVEQ-QAIH--IEVHTSFKVGQVHGQTSSGLWDSKEQCDQFMKRHHVVVITAQCLLDLIR 130
Query: 219 SGTCLMKYLVCLVIDEAHRATGN-YAYCTAIRELMSV----PVQLRILALTAT 266
++ + L+ DE H A G+ + Y + + + + PV R+L LTA+
Sbjct: 131 HAYLKIEDMCVLIFDECHHALGSQHPYRSIMVDYKLLKKDKPVP-RVLGLTAS 182
Score = 90 (36.7 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
L +F N ++ATS+ EEG+D+ + +LVI FD + +Q GR R
Sbjct: 446 LRRFHRNEINCLIATSVLEEGVDVKQCNLVIKFDRPLDMRSYVQSKGRARR 496
Score = 40 (19.1 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 765 ALPFKELSHSKKKRAPDTLLLNHWKQD-------SSPL---KTSDKNYDELTVQSKAVEE 814
AL E K +R DT+ L + D ++P KT D+ +EL++ ++ +E
Sbjct: 1271 ALEMSE-DMEKPRRLEDTVNLEDYGDDQENQEDENTPTNFPKTIDEEIEELSIGARKKQE 1329
Query: 815 LTTSQA 820
+ + A
Sbjct: 1330 IDDNAA 1335
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 112 (44.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 33/88 (37%), Positives = 49/88 (55%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGR-IP 572
L KF++ N++VAT + GLDI VD+VI +D I R+GRT R G+ I
Sbjct: 405 LNKFKSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSIS 464
Query: 573 HIFKPEVQFVELSIEQYVSRGKKV-KDD 599
I + +++ L IE + GKK+ K+D
Sbjct: 465 LITQYDLEMY-LRIESVL--GKKLPKED 489
Score = 64 (27.6 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 39/164 (23%), Positives = 70/164 (42%)
Query: 121 ALFSNTLVALP-TGLGKTLIAAVVIYNFFRWFPDGKIVFA---APSRPLVMQ---QIEAC 173
AL ++ L TG GKT A+ I W + FA AP+R L Q +A
Sbjct: 157 ALEGKDIIGLAQTGSGKTAAFAIPILQSL-WHAQ-QPYFALVLAPTRELTFQIKDTFDAL 214
Query: 174 HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP-QVLEKDIQSGTCLMKYLVCLVI 232
+ +G+ + G + + V TP ++++ + +K L LV+
Sbjct: 215 GSSMGLRSSCIVG--GMDMMDQARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVM 272
Query: 233 DEAHRATGNYAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQ 275
DEA R + + A+ +++ V P++ +AT +K + +Q
Sbjct: 273 DEADRLL-DMDFGPALDKILKVIPIKRTTYLFSATMTNKIEKLQ 315
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 101 (40.6 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD 568
L FR G ++++VAT + GLD+ +V VI +D + + R+GRTGR ++
Sbjct: 447 LSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNN 500
Score = 79 (32.9 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 61/222 (27%), Positives = 90/222 (40%)
Query: 73 PQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALP- 131
P + EF EG D + ++ A T I P+ A+ LV +
Sbjct: 153 PTPSIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPI----------AMSGRDLVGVAQ 202
Query: 132 TGLGKTL---IAAVV-IYNFFRWFP-DGKIVFA-APSRPLVMQQIEACHNIVGIPQEW-- 183
TG GKTL + AVV I N R DG I AP+R L QQI+ G
Sbjct: 203 TGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELA-QQIQQVAIEFGSNTHVRN 261
Query: 184 TIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYA 243
T G + + + TP L ++ GT +K LV+DEA R +
Sbjct: 262 TCIFGGAPKGQQARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRML-DMG 320
Query: 244 YCTAIRELMS-VPVQLRILALTAT-PGSKQQTIQHIIDNLYI 283
+ IR++M + ++L +AT P +Q + ++N YI
Sbjct: 321 FEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNN-YI 361
>UNIPROTKB|F1NEQ3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
Length = 659
Score = 90 (36.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRM--IQRMGRTGRKHDGRIPH---IFKPEV 579
+++ T + GLDI EVD ++ +D P + I R+GRT R +GR H I +PE
Sbjct: 465 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKQKEYIHRVGRTARGINGR-GHALLILRPE- 522
Query: 580 QFVELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYF-HPTSDSTWRPSLIAF 638
EL +Y+ + + + + + + E + YF H ++ ++ + A+
Sbjct: 523 ---ELGFLRYLKQARVPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKAYIRAY 579
Score = 88 (36.0 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 40/159 (25%), Positives = 69/159 (43%)
Query: 127 LVALPTGLGKTL---IAAVVIYNFFRWFP-DGK-IVFAAPSRPLVMQQIEACHNIVGIP- 180
L A TG GKTL I AV + ++ P +G ++ +P+R L MQ ++
Sbjct: 207 LAAAKTGSGKTLAFLIPAVELIYKLKFMPRNGTGVIILSPTRELAMQTYGVLKELMNHHV 266
Query: 181 QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM-KYLVCLVIDEAHRAT 239
+ + M G + + TP L +Q+ M K L CLVIDEA R
Sbjct: 267 HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRIL 326
Query: 240 GNYAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQHI 277
+ +++++ + P + + + +AT K + + I
Sbjct: 327 -EVGFEEEMKQIIKLLPKRRQTMLFSATQTRKVEDLAKI 364
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 100 (40.3 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH---IFKPEVQF 581
+++ T + GLDI EVD ++ +D P I R+GRT R +GR H I +PE
Sbjct: 482 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE--- 537
Query: 582 VELSIEQYVSRGK 594
EL +Y+ + K
Sbjct: 538 -ELGFLRYLKQSK 549
Score = 82 (33.9 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 41/180 (22%), Positives = 78/180 (43%)
Query: 127 LVALPTGLGKTLIAAVVIYNFF---RWFP-DGK-IVFAAPSRPLVMQQIEACHNIVGIP- 180
L A TG GKTL + + ++ P +G ++ +P+R L MQ ++
Sbjct: 224 LAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHV 283
Query: 181 QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM-KYLVCLVIDEAHRAT 239
+ + M G + + TP L +Q+ M K L CLVIDEA R
Sbjct: 284 HTYGLIMGGSNRSAEVQKLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRIL 343
Query: 240 GNYAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSS 298
+ + +++++ + P + + + +AT K + + I +L L + D++V++
Sbjct: 344 -DVGFEEELKQIIKLLPARRQTMLFSATQTRKVEDLARI--SLKKEPLYVGVDDDKEVAT 400
Score = 38 (18.4 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 72 KPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVP--VRDYQFAITKTALFSNTLVA 129
+P+G E EG+ +E V+ +A+ ++ P+ V D FA + NTL A
Sbjct: 140 EPEGAGEEPEGAG-EEPEDGVK-EADDSEVPSLPLGVTGAFEDTSFASLSNLVNENTLKA 197
Query: 130 L 130
+
Sbjct: 198 I 198
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 91 (37.1 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 52/232 (22%), Positives = 94/232 (40%)
Query: 56 TCKQSTLDKFFGNLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQF 115
T K+ ++ LG QG + F+ ++ K+ Y V P+ Q
Sbjct: 176 TLKEDQIETLKQQLGISVQGQDVARPIIDFEHCGFPETLNQNLKKSG-YEVPTPI---QM 231
Query: 116 AITKTALFSNTLVA-LPTGLGKTLIAAVVIYNFFRWFPDGKIVFA---APSRPLVMQ-QI 170
+ L ++A TG GKT AA ++ R F + K A P+R L +Q +
Sbjct: 232 QMIPVGLLGRDILASADTGSGKT--AAFLLPVIIRAFSEDKTPSALILTPTRELAIQIER 289
Query: 171 EACHNIVGIPQEWTIDMTGQIS-PTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
+A + G+P+ T+ + G + P + + +V TP L I+ + + +
Sbjct: 290 QAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVSLSGIKI 349
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT-PGSKQQTIQHIIDN 280
+V+DEA + L P + + ++AT P S +Q ++ N
Sbjct: 350 VVVDEADTMLKMGFQQQVLDVLEHTPGDCQTILVSATIPDSIEQLTDQLLHN 401
Score = 87 (35.7 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 521 GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
G Y V+V+T + GLD++ V LV+ FD S + ++GR GR
Sbjct: 494 GDYEVVVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGR 538
Score = 41 (19.5 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 8 IEINGDDDDEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKA 50
+++ GD D +V E A + KP ++STN C A
Sbjct: 32 LQVEGDRDTPV--HTSVTE--EAVTADKPGHASSTNSPSCQLA 70
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 94 (38.1 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 33/119 (27%), Positives = 52/119 (43%)
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR--KHDGRIPHIFKPEVQFV 582
+++ T + GLDI VD +I FD P I R+GRT R K G+ P
Sbjct: 342 ILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPN---- 397
Query: 583 ELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAK---YFHPTSDSTWRPSLIAF 638
EL +Y+ K +++ P K ++ + + K Y H T+ +R L A+
Sbjct: 398 ELGFLRYLKASKVPLNEYEF--PENKIANVQSQLEKLIKSNYYLHQTAKDGYRSYLQAY 454
Score = 78 (32.5 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 40/162 (24%), Positives = 72/162 (44%)
Query: 125 NTLVALPTGLGKTL---IAAVVIYNFFRWFP-DGK-IVFAAPSRPLVMQQIEACHNIVGI 179
+ L A TG GKTL I A+ + + ++ P +G I+ P+R L +Q ++
Sbjct: 81 DVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEF 140
Query: 180 -PQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT-CLMKYLVCLVIDEAHR 237
Q + I + G + K + TP L +Q+ + K L L+IDEA R
Sbjct: 141 HSQTFGIVIGGANRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADR 200
Query: 238 ATGNYAYCTAIRELMSV-PVQLR-ILALTATPGSKQQTIQHI 277
+ +R+++ + P + R + +AT +K + + I
Sbjct: 201 IL-EIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARI 241
>TAIR|locus:2050715 [details] [associations]
symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
Length = 528
Score = 87 (35.7 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 40/164 (24%), Positives = 72/164 (43%)
Query: 109 PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA---PSRPL 165
P+++ I T S+ L G GKT A I + P+ ++ A P+R L
Sbjct: 179 PIQEESIPIALTG--SDILARAKNGTGKT--GAFCIPTLEKIDPENNVIQAVILVPTREL 234
Query: 166 VMQQIEACHNIVGIPQEWTIDMTGQISPTKRAS-FWKTKRVFFVTP-QVLEKDIQSGTCL 223
+Q + C + + + TG S ++ + TP ++L+ + G C+
Sbjct: 235 ALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDL-AKKGVCV 293
Query: 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTAT 266
+K LV+DEA + + + +I EL+ +P +IL +AT
Sbjct: 294 LKDCAMLVMDEADKLL-SVEFQPSIEELIQFLPESRQILMFSAT 336
Score = 85 (35.0 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 518 FRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR-KHDGRIPHIFK 576
FR G +V T + G+DI V++VI FD + + R+GR+GR H G ++
Sbjct: 437 FRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVT 496
Query: 577 PEVQFVELSIEQYVSRGKKVK 597
E +F EQ + G ++K
Sbjct: 497 YEDRFKMYQTEQEL--GTEIK 515
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 115 (45.5 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDG-RIP 572
L KF+AG N++V T + GLDI VD+VI +D + I R+GRT R G I
Sbjct: 303 LNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGIS 362
Query: 573 HIFKPEVQFVELSIEQYVSRGKKVKD 598
+ + E+++ + IE+ + GKK+ +
Sbjct: 363 LVNQYELEWY-IQIEKLI--GKKLPE 385
Score = 54 (24.1 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 30/121 (24%), Positives = 54/121 (44%)
Query: 160 APSRPLVMQQIEACHNI-VGIPQEWTIDMTGQISPTKRA-SFWKTKRVFFVTPQVLEKDI 217
+P+R L +Q E + I + + G I ++ + K V TP L D
Sbjct: 96 SPTRELAIQIAEQFEALGADISLRCAV-LVGGIDRMQQTIALGKRPHVIVATPGRLW-DH 153
Query: 218 QSGT--CLMKYLVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTI 274
S T +K L LV+DEA R N + ++ +++ +P++ + +AT K + +
Sbjct: 154 MSDTKGFSLKSLKYLVLDEADRLL-NEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKL 212
Query: 275 Q 275
Q
Sbjct: 213 Q 213
>WB|WBGene00013983 [details] [associations]
symbol:ZK512.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0017038 "protein import" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000003 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:Z22177 eggNOG:COG0513 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268803 KO:K14809 PIR:B88549 PIR:S40763
RefSeq:NP_001254980.1 ProteinModelPortal:P34640 SMR:P34640
STRING:P34640 PaxDb:P34640 EnsemblMetazoa:ZK512.2a.1
EnsemblMetazoa:ZK512.2a.2 GeneID:176292 KEGG:cel:CELE_ZK512.2
UCSC:ZK512.2 CTD:176292 WormBase:ZK512.2
GeneTree:ENSGT00550000074969 InParanoid:P34640 OMA:HEKKVET
NextBio:891956 Uniprot:P34640
Length = 578
Score = 95 (38.5 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 49/157 (31%), Positives = 70/157 (44%)
Query: 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEW 183
S+ +V PTG GKTL A V+ R + K+ A ++ E C IV + Q +
Sbjct: 47 SDVVVESPTGSGKTL--AFVL-PMMRMIQNAKLQPADIGALILSPSRELCSQIVSVIQPF 103
Query: 184 ------TID-MTGQISPTKRASFWKTKRV--FFVTPQVLEKDIQSGTCL----MKYLVCL 230
T++ +TG K +K K V TP L + IQ L M+ L L
Sbjct: 104 AEKLNLTVETVTGGQKVDKNIKMFKNKNVNILVATPGRLFQIIQHEKTLIARKMRTLQLL 163
Query: 231 VIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTAT 266
VIDEA R + +RE++S +P Q R +AT
Sbjct: 164 VIDEADRFN-EIQFEDHMREILSCIPKQRRTGLFSAT 199
Score = 77 (32.2 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 25/92 (27%), Positives = 42/92 (45%)
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR-KHDGRIPH 573
++ F V+++T + G+DI ++D VI FD + R GRT R +G
Sbjct: 302 IKAFSDSTNGVMISTDVMARGIDISDIDWVIQFDLPKHSSWFVHRAGRTARCGREGNALI 361
Query: 574 IFKPEVQFVELSIEQYVSRGKKVKDDHAITTP 605
+ E +L+ ++ +KVK D I P
Sbjct: 362 LIASE----QLAYVNFLDNHEKVKLDE-IKVP 388
>UNIPROTKB|F1RYR3 [details] [associations]
symbol:LOC100517018 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00700000104562
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0008026
EMBL:CU104757 Ensembl:ENSSSCT00000004816 Uniprot:F1RYR3
Length = 391
Score = 120 (47.3 bits), Expect = 0.00091, P = 0.00091
Identities = 36/121 (29%), Positives = 61/121 (50%)
Query: 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEW- 183
N L+ PTG GKT+ A + I+ F +P K V+ AP + LV ++++ V I ++
Sbjct: 275 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWK--VRIEEKLG 332
Query: 184 --TIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS--GTCLMKYLVCLVIDEAHRAT 239
I++TG ++P + S K + TP+ + +S +K + L+IDE H
Sbjct: 333 KKVIELTGDVTPDMK-SIAKADLIV-TTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLG 390
Query: 240 G 240
G
Sbjct: 391 G 391
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1165 1106 0.00088 123 3 11 22 0.41 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 126
No. of states in DFA: 627 (67 KB)
Total size of DFA: 502 KB (2233 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 106.00u 0.10s 106.10t Elapsed: 00:00:08
Total cpu time: 106.04u 0.10s 106.14t Elapsed: 00:00:08
Start: Sat May 11 14:08:55 2013 End: Sat May 11 14:09:03 2013
WARNINGS ISSUED: 1