BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037446
(1165 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255571736|ref|XP_002526811.1| protein with unknown function [Ricinus communis]
gi|223533815|gb|EEF35546.1| protein with unknown function [Ricinus communis]
Length = 1351
Score = 1397 bits (3617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 741/1142 (64%), Positives = 871/1142 (76%), Gaps = 57/1142 (4%)
Query: 22 AAVREIDTACQS----SKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNL---GPKPQ 74
AAVREID AC++ ++PS+S S N NL + KKP CKQSTL++F G P P
Sbjct: 22 AAVREIDVACENANLQTEPSSSRSEN-NLSNVILKKPGACKQSTLERFIGKTVRPDPPPG 80
Query: 75 GTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGL 134
++ + + ++IDAEAAKTWIYPVNVPVRDYQ AITKTALFSNTLVALPTGL
Sbjct: 81 NPTVIDD----ENGVSCIEIDAEAAKTWIYPVNVPVRDYQLAITKTALFSNTLVALPTGL 136
Query: 135 GKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPT 194
GKTLIAAVV+YN+FRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQ+SP
Sbjct: 137 GKTLIAAVVMYNYFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQLSPA 196
Query: 195 KRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV 254
KRA FWKTKR+FFVTPQVLEKDIQ+GTCL+K+LVCLVIDEAHRA GNY+YC A+ ELM+V
Sbjct: 197 KRACFWKTKRMFFVTPQVLEKDIQAGTCLVKHLVCLVIDEAHRALGNYSYCVAVCELMAV 256
Query: 255 PVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQ 314
P+QLRILALTATPGSKQQ IQHIIDNL+ISTLEYRNE D DV YVHNRKIELIEV +G+
Sbjct: 257 PIQLRILALTATPGSKQQAIQHIIDNLHISTLEYRNEGDADVVPYVHNRKIELIEVALGK 316
Query: 315 EAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFG 374
+AV+IN ++ VI PY +RLSA+GLLQNRDY+T+ P DLLNSRDKFR+APP LPQ K+G
Sbjct: 317 DAVDINKQLLAVIHPYVARLSAVGLLQNRDYKTVCPPDLLNSRDKFRRAPPSELPQNKYG 376
Query: 375 EVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQS 434
E+EAYF LITLYHIR+LLSSHGIRPAYEMLEEKLKQGSFAR MSKNEDIRKVKL MQQS
Sbjct: 377 EIEAYFAGLITLYHIRKLLSSHGIRPAYEMLEEKLKQGSFARLMSKNEDIRKVKLSMQQS 436
Query: 435 ISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEF 494
+SHGA SPKLSKMLE+L DHFK KDP++SRVIIFSNFRGSVRDIM+AL I ++VKATEF
Sbjct: 437 LSHGAPSPKLSKMLEILTDHFKAKDPQNSRVIIFSNFRGSVRDIMDALTNIENVVKATEF 496
Query: 495 IGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
IGQSSGKA KGQSQKVQQAVLEKFRAG YNVIVATSIGEEGLDIMEVDLVICFDANVSPL
Sbjct: 497 IGQSSGKALKGQSQKVQQAVLEKFRAGKYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 556
Query: 555 RMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIFKEKLTAA 614
RMIQRMGRTGRKHDGRIPH+ KPEVQFV+LSIEQY+ RGKK+KDD+AI TP+F+ KL A
Sbjct: 557 RMIQRMGRTGRKHDGRIPHVLKPEVQFVKLSIEQYIPRGKKLKDDNAIRTPVFESKLNVA 616
Query: 615 ETDLIAKYFHPTSDSTWRPSLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQGLTFSR 674
E LIAKYFHPTS+ +WRPSLIAFPHFQA PSRVHKVMHS RT MLID MQ LQ L FSR
Sbjct: 617 EASLIAKYFHPTSEKSWRPSLIAFPHFQAFPSRVHKVMHSCRTDMLIDTMQCLQNLLFSR 676
Query: 675 D-DRTFVEDEVSSDKHLGLQTVEPCETDERDNFH------GTK---KVTDSELSTRTLGT 724
+ +EDE++S K LG + E + +++ H TK KV DSE+S
Sbjct: 677 ERGDLIIEDEIASGKCLG----DNKENNNKEDPHLWVDSPSTKPQEKVEDSEVSPLKTPR 732
Query: 725 QENHSMPQSCCKSPAAHAYLFGSDFISVDALGKVLIISVPALPFKELSHSKKKRAPDTLL 784
E H++ +S AHAYLF SDF+SVDALGKV+I+SVP +P KE H K +P T
Sbjct: 733 SEKHNVLDLHGQSSPAHAYLFSSDFVSVDALGKVIILSVPVVPLKEAIHCKFT-SPST-- 789
Query: 785 LNHWKQDSSPLKTSDKNYDELTVQSKAVEELTTSQAACIKDGALPISRFCRSDALPEKPL 844
Q+ LK D+N ELTVQ+K+ +L TS A + AL I +S+A +K
Sbjct: 790 -----QNPCHLKAPDENDKELTVQNKSRPDLITSLAQHEINVALTIP---KSNAQEDKIS 841
Query: 845 DGFEEILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDDEYHNDLRDSELSPRLTNLIK 904
+ E I ++P+++ L D DETLD EIK P DEY+N E SPRLTN+I+
Sbjct: 842 NRVEVIPETPLVKNTLLSGGDFVDETLDCLEIKAPPLQADEYNN----IEWSPRLTNMIQ 897
Query: 905 SGVVPESPINENGASNNKGRN----PDLASPVKLCSIQPSKFASLGKTEKCSKYVRASQG 960
SGVVPESPIN+ G SN+KGR+ D+ SP+K C+ + S K E+ A Q
Sbjct: 898 SGVVPESPINDIGWSNSKGRSKFLTTDVISPMKSCNDLQPRSPSQWKNERAINN-SACQR 956
Query: 961 NVSISPVNKKIQTPLLKMNHTASAGGYSPTSPIAEETKTPLANLANSSCSRDWRLSSGDK 1020
N+ +S +N +QTPL+K N+ A GG + SP A+ET T +CS+DW LSSGDK
Sbjct: 957 NLLVSSINNAMQTPLVKENNVARTGGCTSISPAADETYT--------NCSKDWVLSSGDK 1008
Query: 1021 SENVEPARKFKRLRKVRDCEQNKNSENMKENAVAPVVNLARRFLGMSPIQNKHGRGRKKP 1080
SENV+ KF+RLRK+ D E+N+N+++ KE +VNL R F G+SP Q + G+G+ K
Sbjct: 1009 SENVKQVHKFRRLRKIGDIERNRNAQDKKEKT---LVNLDRSFSGISPNQIRRGKGKMKQ 1065
Query: 1081 MDNMREYIEEEAEVSSEAEVSDDEEDDEDNNSYDDSFIDDRMNPTATSTQAESSGVDMMA 1140
+ +IEEEAEVSSEAE+SDDEED++ N+SYDDSFIDDR NPTA STQAE+S VDMMA
Sbjct: 1066 NGKIMAFIEEEAEVSSEAEISDDEEDEQGNSSYDDSFIDDRTNPTAASTQAENSRVDMMA 1125
Query: 1141 IY 1142
IY
Sbjct: 1126 IY 1127
>gi|296081072|emb|CBI18266.3| unnamed protein product [Vitis vinifera]
Length = 1448
Score = 1350 bits (3493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 758/1343 (56%), Positives = 885/1343 (65%), Gaps = 236/1343 (17%)
Query: 3 ANKIPIEINGDDDDEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTL 62
A+ P I DDDDEFDWEAA REID ACQ++KPS S CS N KP KQSTL
Sbjct: 2 ASTTPHLITVDDDDEFDWEAAFREIDVACQTTKPSIS-------CSD-NNKPRLSKQSTL 53
Query: 63 DKFFGNLGPKP--QGTEEFNEGSS---FDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAI 117
D F G P + + + S DE LC + +DAEAAKTWIYPVNVP+R YQ +I
Sbjct: 54 DNFISPAGAVPPLENWDTLDRDKSNLVGDEGLCCIDVDAEAAKTWIYPVNVPLRKYQLSI 113
Query: 118 TKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIV 177
TKTALFSNTLVALPTGLGKTLIAAVV+YN+FRWFP+G IVFAAPSRPLVMQQIEACHNIV
Sbjct: 114 TKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGNIVFAAPSRPLVMQQIEACHNIV 173
Query: 178 GIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS------------------ 219
GIPQEWTIDMTGQ SPT+RA WK KRVFFVTPQVLEKDIQS
Sbjct: 174 GIPQEWTIDMTGQTSPTRRAGLWKAKRVFFVTPQVLEKDIQSVDTDLIKRGLVHIKCGPC 233
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIID 279
CL+KYLVCLVIDEAHRA GNY+YCTA+RELM PVQLRILALTATPGSKQQ+IQ+IID
Sbjct: 234 CICLVKYLVCLVIDEAHRALGNYSYCTAVRELMVAPVQLRILALTATPGSKQQSIQNIID 293
Query: 280 NLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGL 339
NL+ISTLEYRNESD DVS YVHNR +ELIEV MGQ+A+EINN + EVIRP+ RL A+G+
Sbjct: 294 NLHISTLEYRNESDHDVSPYVHNRNVELIEVAMGQDAIEINNVLLEVIRPFVIRLCAVGV 353
Query: 340 LQNRDYQT-------------------------------LSPVD--LLN-------SRDK 359
LQNRD QT L P D LLN S+DK
Sbjct: 354 LQNRDLQTLVHPLVLFFIQIHLQIYMYTWFQVLLYLHIHLVPFDLSLLNAKYNHHISKDK 413
Query: 360 FRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMS 419
FRQAPP LP +K+GEVE YFGALITLYHIR+LLSSHGIRPA+EMLEEK++QG FAR MS
Sbjct: 414 FRQAPPLALPHMKYGEVEGYFGALITLYHIRKLLSSHGIRPAHEMLEEKMRQGPFARLMS 473
Query: 420 KNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF-----------KTKDPKHSRVIIF 468
KNE + K K LMQQS+S+G +PKLSKML++L+DHF K +P++SRVIIF
Sbjct: 474 KNEVLWKAKCLMQQSLSNGTPNPKLSKMLDILIDHFRDEPHNTGSVHKANNPQNSRVIIF 533
Query: 469 SNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVA 528
SNFRGSVRDIM+ALA IG+ VKAT+FIGQSSGKASKGQSQKVQQAVLEKFRAGG+NVIVA
Sbjct: 534 SNFRGSVRDIMDALAKIGESVKATQFIGQSSGKASKGQSQKVQQAVLEKFRAGGFNVIVA 593
Query: 529 TSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR------------------ 570
TSIGEEGLDIMEVDLVICFDAN+SPLRMIQRMGRTGRKHDGR
Sbjct: 594 TSIGEEGLDIMEVDLVICFDANISPLRMIQRMGRTGRKHDGRVDILLSFMLLLVLACEGS 653
Query: 571 -----------------------------------IPHIFKPEVQFVELSIEQYVSRGKK 595
IPHIFKPEVQFVELSIEQ+V RG+K
Sbjct: 654 EMKGYMRKQANSKTVRKHMRNGGMNSFNFHSSPRMIPHIFKPEVQFVELSIEQFVPRGRK 713
Query: 596 VKDDHAITTPIFKEKLTAAETDLIAKYFHPTSDSTWRPSLIAFPHFQALPSRVHKVMHSF 655
KDDH I PI +KLT ET+++AKYF T TWRPSLIAFP FQA P+ VHK+ HSF
Sbjct: 714 GKDDHPIQAPISTDKLTNVETEVLAKYFGTTGKITWRPSLIAFPPFQAFPTGVHKIPHSF 773
Query: 656 RTGMLIDMMQHLQGLTFSRDDRT-FVEDEVSSDKHLGLQTVEPCETDERDNFH-----GT 709
RT +LIDMMQHLQGL+FS + +T FVE EVS+++HLG++TVE + E H G
Sbjct: 774 RTEILIDMMQHLQGLSFSGNSKTFFVEGEVSTNEHLGVETVEQYDKIETVEQHEESRKGN 833
Query: 710 KKVTDSE-LSTRTLG-------------------TQENHSMPQSCC-------------- 735
+ DS L RT + H++P S
Sbjct: 834 RNFNDSNGLCNRTCSLTYQKKKKKLIFKFNHLCDVKFQHAVPDSIIFGDSPKAQPIRELS 893
Query: 736 -----------------------KSPAAHAYLFGSDFISVDALGKVLIISVPALPFKELS 772
+P H+YLFGSDF+SVD LG VLI+SVP +P KE+S
Sbjct: 894 YSEESPIRNTKTKEKHSMSSSQGNNPHVHSYLFGSDFVSVDTLGNVLILSVPLIPSKEVS 953
Query: 773 HSKKKRAPDTLLLNHWKQDSSPLKTSDKNYDELTVQSKAVEELTTS-QAACIKDGALPIS 831
HSK R +++ KAV L TS QA C D L IS
Sbjct: 954 HSKCARQ--------------------------SMEEKAVANLRTSGQARCTMDETLLIS 987
Query: 832 RFCRSDALPEKPLDGFEEILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDDEYHNDLR 891
+ S EK LDG EEI+ +P+L+ + E DT ETL N K P+ E +D+
Sbjct: 988 KLHYSLGQQEKKLDGVEEIVQTPILKGSLSHEGDTAVETLVAN--KTPIFLAAESSDDIG 1045
Query: 892 DSELSPRLTNLIKSGVVPESPINENGASNNKGRN----PDLASPVKLCSIQPSKFASLGK 947
D++LSPRLTNLIKSGVVPESPINE+G SN + RN PDL SP K+ S+ GK
Sbjct: 1046 DTDLSPRLTNLIKSGVVPESPINESGPSNGRPRNEFLVPDLVSPAKVL----SEMLLTGK 1101
Query: 948 TEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTASAGGYSPTSPIAEETKTPLANLANS 1007
EK + V S + SP++ + +P+L+ + +A A G +P+SPI EE KTPLANL N+
Sbjct: 1102 NEKVTLDVSTSGQDTLNSPISNGMHSPILRPDISAKARGSNPSSPIVEEVKTPLANLTNN 1161
Query: 1008 SCSRDWRLSSGDKSENVEPARKFKRLRKVRDCEQNKNSENMKENAVAPVVNLARRFLGMS 1067
SCS+DW LSSGDKS +V+ RKFKRLRK D Q +N ++MKEN++ P NLA +
Sbjct: 1162 SCSKDWHLSSGDKSASVKQERKFKRLRKYGDTGQRRNMKSMKENSIDPSGNLAETS-SII 1220
Query: 1068 PIQNKHGRGRKKPMDNMREYIEEEAEVSSEAEVSDDEEDDEDNNSYDDSFIDDRMNPTAT 1127
PI+NKH RG++KP+DN+R +IEEEAEVSSEAEVSDDEEDD++NNSYDDSFIDDR++PTAT
Sbjct: 1221 PIRNKHNRGKQKPVDNVRAFIEEEAEVSSEAEVSDDEEDDQNNNSYDDSFIDDRIDPTAT 1280
Query: 1128 STQAESSGVDMMAIYRFLLLSLS 1150
STQAE S DMMAIYR LLS S
Sbjct: 1281 STQAEDSRSDMMAIYRRSLLSQS 1303
>gi|15219634|ref|NP_174785.1| fanconi anemia group M protein [Arabidopsis thaliana]
gi|332193685|gb|AEE31806.1| fanconi anemia group M protein [Arabidopsis thaliana]
Length = 1324
Score = 1178 bits (3048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 658/1189 (55%), Positives = 810/1189 (68%), Gaps = 97/1189 (8%)
Query: 3 ANKIPIEINGDDDDEFDWEAAVREIDTAC-QSSKPSTSNSTNFNLCSK----AN-KKPST 56
+++PIE ++D EFDWEAAV+EID AC +++ S+S+S++F + AN KP
Sbjct: 2 GSRVPIE-TIEEDGEFDWEAAVKEIDLACLKTTNASSSSSSHFTPLANPPITANLTKPPA 60
Query: 57 CKQSTLDKFFGNLGPKPQGTEEFNE-GSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQF 115
+QSTLDKF G KP+ + +E G + +++ V ID EAAKTWIYP VP+RDYQF
Sbjct: 61 KRQSTLDKFIGRTEHKPENHQVVSECGVNDNDNSPLVGIDPEAAKTWIYPGFVPLRDYQF 120
Query: 116 AITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175
AITKTALFSNTLVALPTGLGKTLIAAVV+YN+FRWFP GKIVFAAPSRPLVMQQIEACHN
Sbjct: 121 AITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHN 180
Query: 176 IVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEA 235
IVGIPQEWTID+TGQ P+KRA WK+KRVFFVTPQVLEKDIQSGTCL YLVCLVIDEA
Sbjct: 181 IVGIPQEWTIDLTGQTCPSKRAFLWKSKRVFFVTPQVLEKDIQSGTCLTNYLVCLVIDEA 240
Query: 236 HRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQD 295
HRA GNY+YC +RELM+VP+QLRILALTATPGSK Q IQ IIDNL ISTLEYRNESD D
Sbjct: 241 HRALGNYSYCVVVRELMAVPIQLRILALTATPGSKTQAIQGIIDNLQISTLEYRNESDHD 300
Query: 296 VSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLN 355
V YVH+RK+E+IEV +GQ+A +++ R++ VIRPY RL G+ NRD QTLSP ++L
Sbjct: 301 VCPYVHDRKLEVIEVPLGQDADDVSKRLFHVIRPYAVRLKNFGVNLNRDIQTLSPHEVLM 360
Query: 356 SRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFA 415
+RDKFRQAP P LP + G+VE+ F ALITLYHIR+LLSSHGIRPAYEMLEEKLK+G FA
Sbjct: 361 ARDKFRQAPLPGLPHVNHGDVESCFAALITLYHIRKLLSSHGIRPAYEMLEEKLKEGPFA 420
Query: 416 RFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
R MSKNEDIR KLLMQQ +SHGA SPKLSKMLE+LVDHFK KDPK SRVIIFSNFRGSV
Sbjct: 421 RLMSKNEDIRMTKLLMQQRLSHGAPSPKLSKMLEILVDHFKVKDPKTSRVIIFSNFRGSV 480
Query: 476 RDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEG 535
RDIMNAL+ IGD+VKATEFIGQSSGK KGQSQK+QQAVLEKFRAGG+NVIVATSIGEEG
Sbjct: 481 RDIMNALSNIGDMVKATEFIGQSSGKTLKGQSQKIQQAVLEKFRAGGFNVIVATSIGEEG 540
Query: 536 LDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKK 595
LDIMEVDLVICFDANVSPLRMIQRMGRTGRK++GRIPH++KPEVQ VE SI+Q+V RGKK
Sbjct: 541 LDIMEVDLVICFDANVSPLRMIQRMGRTGRKNNGRIPHVYKPEVQHVEFSIKQFVPRGKK 600
Query: 596 VKDDHAITTPIFKEKLTAAETDLIAKYFHPTSDSTWRPSLIAFPHFQALPSRVHKVMHSF 655
+++++A TP F++KLT AET ++AKY++ + R SLIAFPHFQ LPS+VHKVMHS
Sbjct: 601 LQEEYATETPAFQKKLTPAETHMLAKYYNNPDEEKLRVSLIAFPHFQTLPSKVHKVMHSR 660
Query: 656 RTGMLIDMMQHLQGLTFSRDDRT-FVEDEVSSDKHLGLQTVEPCETDERDNFHGT----- 709
+TGMLID MQHLQ TFS ++ F E + L T D +D H
Sbjct: 661 QTGMLIDAMQHLQEPTFSEQSKSFFTEFRAPLGEREELDTGLRVTNDPKD-LHSVRDLEV 719
Query: 710 ----KKVTDSELSTRTLGTQENHSMPQSCCKSPAAHAYLFGSDFISVDALGKVLIISVPA 765
+K E T TL T E + +S H YLF S+ SVD LG V ++ VP
Sbjct: 720 NTSQRKAKQVESPTSTLETTE-----KDYEESSPTHRYLFSSECASVDTLGNVFVMPVPL 774
Query: 766 LPFKELSHSKKKRAPDT----LLLNHWKQDSSPLKTSDKNYDELTVQSKAVEELTTSQAA 821
L F + S P T N D P+ TS+K+ + + K E +
Sbjct: 775 LFFPNVLESDNTPLPKTEKQHSCRNTSHIDLVPVDTSEKHRQD-NISCKLKERFSP---- 829
Query: 822 CIKDGALPISRFCRSDALPEKPLDGFEEILDS-PVLRRNQLR--EEDTTDETLDVNEIKE 878
DG E L++ +++RN R E+D N + E
Sbjct: 830 -----------------------DGASETLETHSLVKRNSTRVGEDDV------ANSVGE 860
Query: 879 PLSPDDEYHNDLRDSELSPRLTNLIKSGVVPESPINENGASNNKG--RNPDLASPVKLCS 936
+ DE +D ELSPRLTN IKSG+VPESP+ + G +N + P L+SP++ +
Sbjct: 861 IVLSSDE--DDCEGLELSPRLTNFIKSGIVPESPVYDQGEANREEDLEFPQLSSPMRFSN 918
Query: 937 --IQPSKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTASAGGYSPTSPIA 994
S F KC+ Y +I +++TP ++ A+ SPI
Sbjct: 919 ELAGESSFPERKVQHKCNDY--------NIVSTTTELRTPQKEVG-LANGTECLAVSPIP 969
Query: 995 EETKTPLANL--ANSSCSRDWRLSSGDKSENVEPARKFKRLRKVRDCEQNKNSENMKEN- 1051
E+ +TPLANL NSS +DWR+SSG+K E + RK KRLR++ DC S +KEN
Sbjct: 970 EDWRTPLANLTNTNSSARKDWRVSSGEKLETLRQPRKLKRLRRLGDC-----SSAVKENY 1024
Query: 1052 -AVAPVVNLARRFLGMSPIQNKHGRGRKKPM--DNMREYIEEEAEVSSEAEVSDDEEDDE 1108
+ ++ R G KH RG+KK + D+++ +I+EEAEVSS AE+S DE +D
Sbjct: 1025 PGITEADHIRSRSRG-----KKHIRGKKKMIMDDDVQVFIDEEAEVSSGAEMSADENEDV 1079
Query: 1109 DNNSYDDSFIDDRMNPTATSTQAESSGVDMMAIYRFLLLSLSFSHAHMH 1157
+S++DSFIDD PTA +TQAES VDMMA+YR++ +SF + ++
Sbjct: 1080 TGDSFEDSFIDDGTMPTA-NTQAESGKVDMMAVYRYIQPKISFFYCEVN 1127
>gi|297846616|ref|XP_002891189.1| hypothetical protein ARALYDRAFT_473682 [Arabidopsis lyrata subsp.
lyrata]
gi|297337031|gb|EFH67448.1| hypothetical protein ARALYDRAFT_473682 [Arabidopsis lyrata subsp.
lyrata]
Length = 1321
Score = 1157 bits (2993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 652/1194 (54%), Positives = 796/1194 (66%), Gaps = 126/1194 (10%)
Query: 3 ANKIPIEINGDDDDEFDWEAAVREIDTACQSSK------------------PSTSNSTNF 44
+++PIE ++D+EFDWEAAV+EID AC + P T NST
Sbjct: 2 GSRVPIE-TIEEDEEFDWEAAVKEIDLACLKTSNASSSSSSSSHFTPLAHPPITGNST-- 58
Query: 45 NLCSKANKKPSTCKQSTLDKFFGNLGPKPQGT-------EEFNEGSSFDESLCHVQIDAE 97
KP +QSTLDKF G +P+ +EF G + D+ V ID E
Sbjct: 59 --------KPPAKRQSTLDKFIGRTEHRPENQVVSQSNFDEFECGGNDDDKSPLVGIDPE 110
Query: 98 AAKTWIYPVN--VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK 155
AAKTWIYPVN VP+RDYQFAITKTALFSNTLVALPTGLGKTLIAAVV+YN+FRWFP+GK
Sbjct: 111 AAKTWIYPVNGSVPLRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGK 170
Query: 156 IVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEK 215
IVFAAPSRPLVMQQIEACHNIVGIPQEWTID+TGQ P+KRA WK+KRVFFVTPQVLEK
Sbjct: 171 IVFAAPSRPLVMQQIEACHNIVGIPQEWTIDLTGQTCPSKRAFLWKSKRVFFVTPQVLEK 230
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
DIQSGTCL YLVCLVIDEAHRA GNY+YC +RELM+VPVQLRILALTATPGSK IQ
Sbjct: 231 DIQSGTCLTNYLVCLVIDEAHRALGNYSYCVVVRELMAVPVQLRILALTATPGSKTLAIQ 290
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335
IIDNL ISTLEYRNESD DV YVH+RK+ELIEV +GQ+A +++ R+++VIRPY RL
Sbjct: 291 GIIDNLQISTLEYRNESDHDVCPYVHDRKLELIEVPLGQDADDVSKRLFDVIRPYAVRLK 350
Query: 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395
G+ NRD QTLSP ++L +RDKFRQAP P LP + G+VE+ F ALITLYHIR+LLSS
Sbjct: 351 NFGVNLNRDLQTLSPHEVLMARDKFRQAPLPGLPHVNHGDVESCFSALITLYHIRKLLSS 410
Query: 396 HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF 455
HGIRPAYEMLEEKLK+G FAR MSKNEDIRK KLLMQQ +SHGA SPKLSKMLE+LVDHF
Sbjct: 411 HGIRPAYEMLEEKLKEGPFARLMSKNEDIRKTKLLMQQRLSHGAPSPKLSKMLEILVDHF 470
Query: 456 KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVL 515
K KDP+ SRVIIFSNFRGSVRDIMNAL+ IGD+VKATEFIGQSSGK KGQSQKVQQAVL
Sbjct: 471 KVKDPRTSRVIIFSNFRGSVRDIMNALSNIGDVVKATEFIGQSSGKTLKGQSQKVQQAVL 530
Query: 516 EKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
EKFRAGG+NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK++GRIPH++
Sbjct: 531 EKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKNNGRIPHVY 590
Query: 576 KPEVQFVELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPTSDSTWRPSL 635
KPEVQ VE SI+Q++ RG K++D++A TP FK+KLT+AE D++AKY++ + R SL
Sbjct: 591 KPEVQHVEFSIKQFIPRGTKLQDEYATETPAFKKKLTSAEMDMLAKYYNNPDEEKLRVSL 650
Query: 636 IAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQGLTFSRDDRTF-VEDEVSSDKHLGLQT 694
IAFPHFQ LPS+VHKVMHS +TGMLID MQHLQ TFS ++F E + L T
Sbjct: 651 IAFPHFQTLPSKVHKVMHSRQTGMLIDAMQHLQEPTFSEQSKSFFTEFGAPLGEREELDT 710
Query: 695 VEPCETDERDNFH---------GTKKVTDSELSTRTLGTQENHSMPQSCCKSPAAHAYLF 745
D +D H +K E T TL T E + +S H YLF
Sbjct: 711 GLRVTNDPKD-LHCFRELEVNTSQRKAKQVESPTSTLETTE-----KDYEESSPTHCYLF 764
Query: 746 GSDFISVDALGKVLIISVPALPFKELSHSKKKRAPDTLLLNHWKQ----DSSPLKTSDKN 801
S+ +VD LGKV ++ VP F + S+ P T + + DS P+ T K+
Sbjct: 765 SSECAAVDTLGKVFVMPVPLSFFSNVLESENMPLPKTEKQHSCQNISHIDSVPIDTPAKH 824
Query: 802 YDELTVQSKAVEELTTSQAACIKDGALPISRFCRSDALPEKPLDGFE-EILDSPVLRRNQ 860
R D + EK + F + D + +
Sbjct: 825 ---------------------------------RQDNISEKLKERFSPDGADKTLENHSH 851
Query: 861 LREEDTTDETLDV-NEIKEPLSPDDEYHNDLRDSELSPRLTNLIKSGVVPESPINENGAS 919
++ T+ DV N + E + DE +D ELSPRLTN IKSGVVPESP+ + G +
Sbjct: 852 VKRHSTSVGQEDVGNSVGEIVLSSDE--DDWEGLELSPRLTNFIKSGVVPESPVYDQGVA 909
Query: 920 NNKGRN----PDLASPVKLCSIQPSKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPL 975
N R P ++SP++L + + +S +K AS N +++TP
Sbjct: 910 NEANREDLDFPQVSSPMRLSNELAGEPSS-----PETKIQHASTTN--------ELRTPQ 956
Query: 976 LKMNHTASAGGYSPTSPIAEETKTPLANLAN--SSCSRDWRLSSGDKSENVEPARKFKRL 1033
++ TA+ SPI +E +TPLANL N SS S+DWR+SSG+KSE + RK KRL
Sbjct: 957 KEVG-TANGTECLAVSPIPDEWRTPLANLTNTNSSASKDWRVSSGEKSETIRQPRKLKRL 1015
Query: 1034 RKVRDCEQNKNSENMKENAVAPVVNLARRFLGMSPIQNKHGRGRKKPM--DNMREYIEEE 1091
R++ DC S +KEN P + A S + K RG+KK + D+++ +I+EE
Sbjct: 1016 RRLGDC-----SSAVKENN--PGIKEADHIRSRSR-RKKLIRGKKKMIIDDDVQVFIDEE 1067
Query: 1092 AEVSSEAEVSDDEEDDEDNNSYDDSFIDDRMNPTATSTQAESSGVDMMAIYRFL 1145
AEVSS AE+S DE +D +S++DSFIDD PTA +TQAE + ++ + + +
Sbjct: 1068 AEVSSGAEMSADENEDVTGDSFEDSFIDDGTMPTA-NTQAEIENIFLLFVSKMV 1120
>gi|390132011|gb|AFL55357.1| Fanconia anemia complementation group M-like protein [Arabidopsis
thaliana]
Length = 1344
Score = 1156 bits (2990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 662/1228 (53%), Positives = 808/1228 (65%), Gaps = 143/1228 (11%)
Query: 3 ANKIPIEINGDDDDEFDWEAAVREIDTAC-QSSKPSTSNSTNFNLCSK----AN-KKPST 56
+++PIE ++D EFDWEAAV+EID AC +++ S+S+S++F + AN KP
Sbjct: 2 GSRVPIE-TIEEDGEFDWEAAVKEIDLACLKTTNASSSSSSHFTPLANPPITANLTKPPA 60
Query: 57 CKQSTLDKFFGNLGPKPQGTEEFNE-GSSFDESLCHVQIDAEAAKTWIYPVN--VPVRDY 113
+QSTLDKF G KP+ + +E G + +++ V ID EAAKTWIYPVN VP+RDY
Sbjct: 61 KRQSTLDKFIGRTEHKPENHQVVSECGVNDNDNSPLVGIDPEAAKTWIYPVNGSVPLRDY 120
Query: 114 QFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEAC 173
QFAITKTALFSNTLVALPTGLGKTLIAAVV+YN+FRWFP GKIVFAAPSRPLVMQQIEAC
Sbjct: 121 QFAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEAC 180
Query: 174 HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVID 233
HNIVGIPQEWTID+TGQ P+KRA WK+KRVFFVTPQVLEKDIQSGTCL YLVCLVID
Sbjct: 181 HNIVGIPQEWTIDLTGQTCPSKRAFLWKSKRVFFVTPQVLEKDIQSGTCLTNYLVCLVID 240
Query: 234 EAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESD 293
EAHRA GNY+YC +RELM+VP+QLRILALTATPGSK Q IQ IIDNL ISTLEYRNESD
Sbjct: 241 EAHRALGNYSYCVVVRELMAVPIQLRILALTATPGSKTQAIQGIIDNLQISTLEYRNESD 300
Query: 294 QDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDL 353
DV YVH+RK+E+IEV +GQ+A +++ R++ VIRPY RL G+ NRD QTLSP ++
Sbjct: 301 HDVCPYVHDRKLEVIEVPLGQDADDVSKRLFHVIRPYAVRLKNFGVNLNRDIQTLSPHEV 360
Query: 354 LNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGS 413
L +RDKFRQAP P LP + G+VE+ F ALITLYHIR+LLSSHGIRPAYEMLEEKLK+G
Sbjct: 361 LMARDKFRQAPLPGLPHVNHGDVESCFAALITLYHIRKLLSSHGIRPAYEMLEEKLKEGP 420
Query: 414 FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRG 473
FAR MSKNEDIR KLLMQQ +SHGA SPKLSKMLE+LVDHFK KDPK SRVIIFSNFRG
Sbjct: 421 FARLMSKNEDIRMTKLLMQQRLSHGAPSPKLSKMLEILVDHFKVKDPKTSRVIIFSNFRG 480
Query: 474 SVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGE 533
SVRDIMNAL+ IGD+VKATEFIGQSSGK KGQSQK+QQAVLEKFRAGG+NVIVATSIGE
Sbjct: 481 SVRDIMNALSNIGDMVKATEFIGQSSGKTLKGQSQKIQQAVLEKFRAGGFNVIVATSIGE 540
Query: 534 EGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR----------------------- 570
EGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK++GR
Sbjct: 541 EGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKNNGRVVVLACEGSEKNSYMRKQASGRA 600
Query: 571 ---------------------IPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIFKE 609
IPH++KPEVQ VE SI+Q+V RGKK+++++A TP F++
Sbjct: 601 IKKHMRNGGTNSFNFHPSPRMIPHVYKPEVQHVEFSIKQFVPRGKKLQEEYATETPAFQK 660
Query: 610 KLTAAETDLIAKYFHPTSDSTWRPSLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQG 669
KLT AET ++AKY++ + R SLIAFPHFQ LPS+VHKVMHS +TGMLID MQHLQ
Sbjct: 661 KLTPAETHMLAKYYNNPDEEKLRVSLIAFPHFQTLPSKVHKVMHSRQTGMLIDAMQHLQE 720
Query: 670 LTFSRDDRT-FVEDEVSSDKHLGLQTVEPCETDERDNFHGT---------KKVTDSELST 719
TFS ++ F E + L T D +D H +K E T
Sbjct: 721 PTFSEQSKSFFTEFRAPLGEREELDTGLRVTNDPKD-LHSVRDLEVNTSQRKAKQVESPT 779
Query: 720 RTLGTQENHSMPQSCCKSPAAHAYLFGSDFISVDALGKVLIISVPALPFKELSHSKKKRA 779
TL T E + +S H YLF S+ SVD LG V ++ VP L F + S
Sbjct: 780 STLETTE-----KDYEESSPTHRYLFSSECASVDTLGNVFVMPVPLLFFPNVLESDNTPL 834
Query: 780 PDT----LLLNHWKQDSSPLKTSDKNYDELTVQSKAVEELTTSQAACIKDGALPISRFCR 835
P T N D P+ TS+K+ + + K E +
Sbjct: 835 PKTEKQHSCRNTSHIDLVPVDTSEKHRQD-NISCKLKERFSP------------------ 875
Query: 836 SDALPEKPLDGFEEILDS-PVLRRNQLR--EEDTTDETLDVNEIKEPLSPDDEYHNDLRD 892
DG E L++ +++RN R E+D N + E + DE +D
Sbjct: 876 ---------DGASETLETHSLVKRNSTRVGEDDV------ANSVGEIVLSSDE--DDCEG 918
Query: 893 SELSPRLTNLIKSGVVPESPINENGASNNKG--RNPDLASPVKLCS--IQPSKFASLGKT 948
ELSPRLTN IKSG+VPESP+ + G +N + P L+SP++ + S F
Sbjct: 919 LELSPRLTNFIKSGIVPESPVYDQGEANREEDLEFPQLSSPMRFSNELAGESSFPERKVQ 978
Query: 949 EKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTASAGGYSPTSPIAEETKTPLANL--AN 1006
KC+ Y +I +++TP ++ A+ SPI E+ +TPLANL N
Sbjct: 979 HKCNDY--------NIVSTTTELRTPQKEVG-LANGTECLAVSPIPEDWRTPLANLTNTN 1029
Query: 1007 SSCSRDWRLSSGDKSENVEPARKFKRLRKVRDCEQNKNSENMKEN--AVAPVVNLARRFL 1064
SS +DWR+SSG+K E + RK KRLR++ DC S +KEN + ++ R
Sbjct: 1030 SSARKDWRVSSGEKLETLRQPRKLKRLRRLGDC-----SSAVKENYPGITEADHIRSRSR 1084
Query: 1065 GMSPIQNKHGRGRKKPM--DNMREYIEEEAEVSSEAEVSDDEEDDEDNNSYDDSFIDDRM 1122
G KH RG+KK + D+++ +I+EEAEVSS AE+S DE +D +S++DSFIDD
Sbjct: 1085 G-----KKHIRGKKKMIMDDDVQVFIDEEAEVSSGAEMSADENEDVTGDSFEDSFIDDGT 1139
Query: 1123 NPTATSTQAESSGVDMMAIYRFLLLSLS 1150
PTA +TQAES VDMMA+YR LLS S
Sbjct: 1140 MPTA-NTQAESGKVDMMAVYRRSLLSQS 1166
>gi|334183045|ref|NP_001185141.1| fanconi anemia group M protein [Arabidopsis thaliana]
gi|332193686|gb|AEE31807.1| fanconi anemia group M protein [Arabidopsis thaliana]
Length = 1390
Score = 1144 bits (2960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 657/1250 (52%), Positives = 809/1250 (64%), Gaps = 153/1250 (12%)
Query: 3 ANKIPIEINGDDDDEFDWEAAVREIDTAC-QSSKPSTSNSTNFNLCSK----AN-KKPST 56
+++PIE ++D EFDWEAAV+EID AC +++ S+S+S++F + AN KP
Sbjct: 2 GSRVPIE-TIEEDGEFDWEAAVKEIDLACLKTTNASSSSSSHFTPLANPPITANLTKPPA 60
Query: 57 CKQSTLDKFFGNLGPKPQGTEEFNE-GSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQF 115
+QSTLDKF G KP+ + +E G + +++ V ID EAAKTWIYP VP+RDYQF
Sbjct: 61 KRQSTLDKFIGRTEHKPENHQVVSECGVNDNDNSPLVGIDPEAAKTWIYPGFVPLRDYQF 120
Query: 116 AITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175
AITKTALFSNTLVALPTGLGKTLIAAVV+YN+FRWFP GKIVFAAPSRPLVMQQIEACHN
Sbjct: 121 AITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHN 180
Query: 176 IVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEA 235
IVGIPQEWTID+TGQ P+KRA WK+KRVFFVTPQVLEKDIQSGTCL YLVCLVIDEA
Sbjct: 181 IVGIPQEWTIDLTGQTCPSKRAFLWKSKRVFFVTPQVLEKDIQSGTCLTNYLVCLVIDEA 240
Query: 236 HRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQD 295
HRA GNY+YC +RELM+VP+QLRILALTATPGSK Q IQ IIDNL ISTLEYRNESD D
Sbjct: 241 HRALGNYSYCVVVRELMAVPIQLRILALTATPGSKTQAIQGIIDNLQISTLEYRNESDHD 300
Query: 296 VSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLN 355
V YVH+RK+E+IEV +GQ+A +++ R++ VIRPY RL G+ NRD QTLSP ++L
Sbjct: 301 VCPYVHDRKLEVIEVPLGQDADDVSKRLFHVIRPYAVRLKNFGVNLNRDIQTLSPHEVLM 360
Query: 356 SRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFA 415
+RDKFRQAP P LP + G+VE+ F ALITLYHIR+LLSSHGIRPAYEMLEEKLK+G FA
Sbjct: 361 ARDKFRQAPLPGLPHVNHGDVESCFAALITLYHIRKLLSSHGIRPAYEMLEEKLKEGPFA 420
Query: 416 RFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
R MSKNEDIR KLLMQQ +SHGA SPKLSKMLE+LVDHFK KDPK SRVIIFSNFRGSV
Sbjct: 421 RLMSKNEDIRMTKLLMQQRLSHGAPSPKLSKMLEILVDHFKVKDPKTSRVIIFSNFRGSV 480
Query: 476 RDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEG 535
RDIMNAL+ IGD+VKATEFIGQSSGK KGQSQK+QQAVLEKFRAGG+NVIVATSIGEEG
Sbjct: 481 RDIMNALSNIGDMVKATEFIGQSSGKTLKGQSQKIQQAVLEKFRAGGFNVIVATSIGEEG 540
Query: 536 LDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR------------------------- 570
LDIMEVDLVICFDANVSPLRMIQRMGRTGRK++GR
Sbjct: 541 LDIMEVDLVICFDANVSPLRMIQRMGRTGRKNNGRPLLVLACEGSEKNSYMRKQASGRAI 600
Query: 571 --------------------IPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIFKEK 610
IPH++KPEVQ VE SI+Q+V RGKK+++++A TP F++K
Sbjct: 601 KKHMRNGGTNSFNFHPSPRMIPHVYKPEVQHVEFSIKQFVPRGKKLQEEYATETPAFQKK 660
Query: 611 LTAAETDLIAKYFHPTSDSTWRPSLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQGL 670
LT AET ++AKY++ + R SLIAFPHFQ LPS+VHKVMHS +TGMLID MQHLQ
Sbjct: 661 LTPAETHMLAKYYNNPDEEKLRVSLIAFPHFQTLPSKVHKVMHSRQTGMLIDAMQHLQEP 720
Query: 671 TFSRDDRT-FVEDEVSSDKHLGLQTVEPCETDERDNFHGT---------KKVTDSELSTR 720
TFS ++ F E + L T D +D H +K E T
Sbjct: 721 TFSEQSKSFFTEFRAPLGEREELDTGLRVTNDPKD-LHSVRDLEVNTSQRKAKQVESPTS 779
Query: 721 TLGTQENHSMPQSCCKSPAAHAYLFGSDFISVDALGKVLIISVPALPFKELSHSKKKRAP 780
TL T E + +S H YLF S+ SVD LG V ++ VP L F + S P
Sbjct: 780 TLETTE-----KDYEESSPTHRYLFSSECASVDTLGNVFVMPVPLLFFPNVLESDNTPLP 834
Query: 781 DT----LLLNHWKQDSSPLKTSDKNYDELTVQSKAVEELTTSQAACIKDGALPISRFCRS 836
T N D P+ TS+K+ + + K E +
Sbjct: 835 KTEKQHSCRNTSHIDLVPVDTSEKHRQD-NISCKLKERFSP------------------- 874
Query: 837 DALPEKPLDGFEEILDS-PVLRRNQLR--EEDTTDETLDVNEIKEPLSPDDEYHNDLRDS 893
DG E L++ +++RN R E+D N + E + DE +D
Sbjct: 875 --------DGASETLETHSLVKRNSTRVGEDDV------ANSVGEIVLSSDE--DDCEGL 918
Query: 894 ELSPRLTNLIKSGVVPESPINENGASNNKG--RNPDLASPVKLCS--IQPSKFASLGKTE 949
ELSPRLTN IKSG+VPESP+ + G +N + P L+SP++ + S F
Sbjct: 919 ELSPRLTNFIKSGIVPESPVYDQGEANREEDLEFPQLSSPMRFSNELAGESSFPERKVQH 978
Query: 950 KCSKYVRASQGNVSISPVNKKIQTPLLKMNHTASAGGYSPTSPIAEETKTPLANL--ANS 1007
KC+ Y +I +++TP ++ A+ SPI E+ +TPLANL NS
Sbjct: 979 KCNDY--------NIVSTTTELRTPQKEVG-LANGTECLAVSPIPEDWRTPLANLTNTNS 1029
Query: 1008 SCSRDWRLSSGDKSENVEPARKFKRLRKVRDCEQNKNSENMKEN--AVAPVVNLARRFLG 1065
S +DWR+SSG+K E + RK KRLR++ DC S +KEN + ++ R G
Sbjct: 1030 SARKDWRVSSGEKLETLRQPRKLKRLRRLGDC-----SSAVKENYPGITEADHIRSRSRG 1084
Query: 1066 MSPIQNKHGRG---------------RKKPM---DNMREYIEEEAEVSSEAEVSDDEEDD 1107
I+ K +KK M D+++ +I+EEAEVSS AE+S DE +D
Sbjct: 1085 KKHIRVKWKSAESWFTLSSVAFALVTKKKKMIMDDDVQVFIDEEAEVSSGAEMSADENED 1144
Query: 1108 EDNNSYDDSFIDDRMNPTATSTQAESSGVDMMAIYRFLLLSLSFSHAHMH 1157
+S++DSFIDD PTA +TQAES VDMMA+YR++ +SF + ++
Sbjct: 1145 VTGDSFEDSFIDDGTMPTA-NTQAESGKVDMMAVYRYIQPKISFFYCEVN 1193
>gi|356523564|ref|XP_003530407.1| PREDICTED: ATP-dependent DNA helicase MPH1-like [Glycine max]
Length = 1262
Score = 1125 bits (2909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 645/1204 (53%), Positives = 769/1204 (63%), Gaps = 174/1204 (14%)
Query: 1 MAANKIPIEINGDDDDEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQS 60
MA+N P EI DD+ FDWEAA REID CQ++ F +K +QS
Sbjct: 1 MASNN-PYEIM--DDEGFDWEAAAREIDVVCQTTSDVKGKGRVFE-----KRK----QQS 48
Query: 61 TLDKFFGNLG-------PKPQGTEEFNEGSSFDESLCHVQ-IDAEAAKTWIYPVNVPVRD 112
TLDKF P PQ E+ D+S + ID EAAKTWIYPVNVP+RD
Sbjct: 49 TLDKFISIANANAEKETPPPQFQED-------DQSPAFIHHIDTEAAKTWIYPVNVPLRD 101
Query: 113 YQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEA 172
YQF IT++ALFSNTLVALPTGLGKTLIAAVV+YN+FRWFP GKIVFAAPSRPLVMQQIEA
Sbjct: 102 YQFDITQSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEA 161
Query: 173 CHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVI 232
CHNIVGIPQEWT+DMTGQ+SP KRA FWKTKRVFFVTPQVLEKDI SGTCL+KYLVCLVI
Sbjct: 162 CHNIVGIPQEWTVDMTGQLSPPKRAQFWKTKRVFFVTPQVLEKDIHSGTCLVKYLVCLVI 221
Query: 233 DEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNES 292
DEAHRA GNYAYC A+RELMSVPVQLRILALTATPGSKQQT+Q +IDNL+IS LEYR+E+
Sbjct: 222 DEAHRAMGNYAYCEAVRELMSVPVQLRILALTATPGSKQQTVQAVIDNLHISRLEYRSET 281
Query: 293 DQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVD 352
D DV SYVH+RKIELI+V MG EAVEINN+ EVIRP +RL+ IG++QNRDY+TLSP
Sbjct: 282 DHDVISYVHSRKIELIQVAMGPEAVEINNKFMEVIRPIVARLTNIGVIQNRDYRTLSPCQ 341
Query: 353 LLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQG 412
LL R+KFRQ P +L + + +VE YFG LITLY+I +LLSSHGIRPA+EMLE KLKQG
Sbjct: 342 LLEIREKFRQRPRQDLSHVNYEDVEGYFGVLITLYYIHKLLSSHGIRPAHEMLERKLKQG 401
Query: 413 SFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFR 472
FA+FMSKNE I K + LMQQS+SHGA SPKLSKML+VL++HFKT DP++SRVIIFSN+R
Sbjct: 402 YFAKFMSKNEVILKARQLMQQSLSHGASSPKLSKMLDVLLEHFKTNDPQNSRVIIFSNYR 461
Query: 473 GSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIG 532
SVRDIMNAL IG+LVKATEFIGQSSGKA KGQSQKVQQAVL+KFR+G YNVIVATSIG
Sbjct: 462 ESVRDIMNALGDIGELVKATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIG 521
Query: 533 EEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR---------------------- 570
EEGLDIMEVDLVI FDAN+SPLRMIQRMGRTGRKHDGR
Sbjct: 522 EEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRSLLVFACEGTELKGYLQKQAKS 581
Query: 571 -----------------------IPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIF 607
IPH+ KPEV+ VELSIE+++ R K VKDD +P
Sbjct: 582 KTISKHMRNGGINSFTFHPSPRMIPHVLKPEVKCVELSIEKFIPRPKNVKDDELHISP-S 640
Query: 608 KEKLTAAETDLIAKYFHPTSDSTWRPSLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHL 667
K+KLT AE DL+ YFHPT ++ R SLIAFPHFQ PSRVHKV HS T MLIDMMQ L
Sbjct: 641 KDKLTVAEIDLLETYFHPTVENNSRMSLIAFPHFQTFPSRVHKVKHSSGTLMLIDMMQRL 700
Query: 668 QGL-TFSRDDRTFVEDEVSSDKHLGLQTVEPCETDERDNFHGTKKVTDSELSTRTLGTQE 726
QGL +F DD+T + D LG HG K VT +EL E
Sbjct: 701 QGLVSFPEDDKT---SSLQEDLCLG---------------HG-KPVTTTELD-------E 734
Query: 727 NHSMPQSCCKSPAAHAYLFGSDFISVDALGKVLIISVPALPFKELSHSKKKRAPDTLLLN 786
+SC S+ K + + +N
Sbjct: 735 AKKDNESC---------------------------------------SRHKMRRNLVSVN 755
Query: 787 HWKQDSSPLKTSDKNYDELTVQSKAVEELTTSQ-AACIKDGALPISRFCRSDALPEKPLD 845
+ DS L K+ +LT Q +L +Q AC D +P
Sbjct: 756 CLEMDSCHLGIQSKDLVDLTRQDGTFCDLGKNQEEACEGDETIP---------------- 799
Query: 846 GFEEILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDDEYHNDLRDSELSPRLTNLIKS 905
++P+ +R+ E D + +++ EI+ + N +RD ELSPRLTNLI+S
Sbjct: 800 ------ETPIAKRSLSNEGDNDGQMVNLVEIETSSLAANACINGMRDEELSPRLTNLIRS 853
Query: 906 GVVPESPINENGASNNKGRNPDLASPVKLCSIQPSKFASLGKTEKCSKYV-RASQGNVSI 964
GVVPESP++E G S D PV L Q +SL +E + + + NV
Sbjct: 854 GVVPESPVDERGKSRYNSIIRDFVLPVHLHKEQ--DVSSLSSSETKEVIIDKGTNKNVCT 911
Query: 965 SPVNKKIQTPLLKMNHTASAGGYSPTSPIAEETKTPLANLANSSCSRDWRLSSGDKSENV 1024
SP+N + Q+PLL + + A G S I E N S + G+ SE++
Sbjct: 912 SPIN-ETQSPLLDLKNCAIRRGRVFLSQIEEGHA---HNTDPSFSEEAYPADCGEMSESI 967
Query: 1025 EPARKFKRLRKVRDCEQNKNSENMKENAVAPVVNLARRFLGMSPIQNKHGRGRKKPMDNM 1084
+PARKFKRLRK D E+N N +N K A N + +P Q KHG+G++K N+
Sbjct: 968 KPARKFKRLRKAEDTERNMNQKNNK--LFASTANFLKPSSASNPAQYKHGQGKRKSTHNV 1025
Query: 1085 REYIEEEAEVSSEAEVSDDEEDDEDNNSYDDSFIDDRMNPTATSTQAESSGVDMMAIYRF 1144
R++IEEEAEVSS+ VS+D EDDE+ +S+ DSFIDDR NPTA S Q E+S +DMMAIYR
Sbjct: 1026 RDFIEEEAEVSSDGYVSND-EDDEEGSSF-DSFIDDRTNPTAAS-QPEASRMDMMAIYRR 1082
Query: 1145 LLLS 1148
LLS
Sbjct: 1083 SLLS 1086
>gi|8778360|gb|AAF79368.1|AC007887_27 F15O4.40 [Arabidopsis thaliana]
Length = 1587
Score = 1051 bits (2718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 637/1343 (47%), Positives = 804/1343 (59%), Gaps = 252/1343 (18%)
Query: 3 ANKIPIEINGDDDDEFDWEAAVREIDTAC-QSSKPSTSNSTNFNLCSK----AN-KKPST 56
+++PIE ++D EFDWEAAV+EID AC +++ S+S+S++F + AN KP
Sbjct: 90 GSRVPIE-TIEEDGEFDWEAAVKEIDLACLKTTNASSSSSSHFTPLANPPITANLTKPPA 148
Query: 57 CKQSTLDKFFGNLGPKPQGTEEFNE-GSSFDESLCHVQIDAEAAKTWIYPVN--VPVRDY 113
+QSTLDKF G KP+ + +E G + +++ V ID EAAKTWIYPVN VP+RDY
Sbjct: 149 KRQSTLDKFIGRTEHKPENHQVVSECGVNDNDNSPLVGIDPEAAKTWIYPVNGSVPLRDY 208
Query: 114 QFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEAC 173
QFAITKTALFSNTLVALPTGLGKTLIAAVV+YN+FRWFP GKIVFAAPSRPLVMQQIEAC
Sbjct: 209 QFAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEAC 268
Query: 174 HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG------------- 220
HNIVGIPQEWTID+TGQ P+KRA WK+KRVFFVTPQVLEKDIQSG
Sbjct: 269 HNIVGIPQEWTIDLTGQTCPSKRAFLWKSKRVFFVTPQVLEKDIQSGDARFVLKLPLVHK 328
Query: 221 ------TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTI 274
TCL YLVCLVIDEAHRA GNY+YC +RELM+VP+QLRILALTATPGSK Q I
Sbjct: 329 DCPFSGTCLTNYLVCLVIDEAHRALGNYSYCVVVRELMAVPIQLRILALTATPGSKTQAI 388
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVE-----MGQEAVEINNRIWEVIRP 329
Q IIDNL ISTLEYRNESD DV YVH+RK+E+IEV+ +GQ+A +++ R++ VIRP
Sbjct: 389 QGIIDNLQISTLEYRNESDHDVCPYVHDRKLEVIEVQAEQVPLGQDADDVSKRLFHVIRP 448
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHI 389
Y RL GL SP ++L +RDKFRQAP P LP + G+VE+ F ALITLYHI
Sbjct: 449 YAVRLKNFGL---------SPHEVLMARDKFRQAPLPGLPHVNHGDVESCFAALITLYHI 499
Query: 390 RRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLE 449
R+LLSSHGIRPAYEMLEEKLK+G FAR MSKNEDIR KLLMQQ +SHGA SPKLSKMLE
Sbjct: 500 RKLLSSHGIRPAYEMLEEKLKEGPFARLMSKNEDIRMTKLLMQQRLSHGAPSPKLSKMLE 559
Query: 450 VLVDHF------------------------KTKDP------KHSR-------VIIFSNFR 472
+LVDHF +++D K R V+ F F
Sbjct: 560 ILVDHFIDVSTQLVLQLNIDMILFYGCRSERSEDITGHYFLKFQRKRKVSIIVVCFPLFS 619
Query: 473 GS-------------VRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
S RDIMNAL+ IGD+VKATEFIGQSSGK KGQSQK+QQAVLEKFR
Sbjct: 620 CSSYFFVSIHPITLLFRDIMNALSNIGDMVKATEFIGQSSGKTLKGQSQKIQQAVLEKFR 679
Query: 520 AGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR--------- 570
AGG+NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK++GR
Sbjct: 680 AGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKNNGRDQKRTAICE 739
Query: 571 ------------------IPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIFKEKLT 612
IPH++KPEVQ VE SI+Q+V RGKK+++++A TP F++KLT
Sbjct: 740 SKQVDGLLKNTCGMEEQIIPHVYKPEVQHVEFSIKQFVPRGKKLQEEYATETPAFQKKLT 799
Query: 613 AAETDLIAKYFHPTSDSTWRPSLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQGLTF 672
AET ++AKY++ + R SLIAFPHFQ LPS+VHKVMHS +TGMLID MQHLQ TF
Sbjct: 800 PAETHMLAKYYNNPDEEKLRVSLIAFPHFQTLPSKVHKVMHSRQTGMLIDAMQHLQEPTF 859
Query: 673 SRDDRTF--------------------------VEDEVSSDKHLGLQTVEPCETDERDNF 706
S ++F D +S + +G + + D++ F
Sbjct: 860 SEQSKSFFTEVWFKILFRAPLGEREELDTGLRVTNDPKASRRSIGYKLL---NNDQKAYF 916
Query: 707 H-------------------GTKKVTDSELSTRTLGTQENHSMPQSCCKSPAAHAYLFGS 747
+K E T TL T E + +S H YLF S
Sbjct: 917 RIYYLLFLDLHSVRDLEVNTSQRKAKQVESPTSTLETTE-----KDYEESSPTHRYLFSS 971
Query: 748 DFISVDALGKVLIISVPALPFKELSHSKKKRAPDT----LLLNHWKQDSSPLKTSDKNYD 803
+ SVD LG V ++ VP L F + S P T N D P+ TS+K+
Sbjct: 972 ECASVDTLGNVFVMPVPLLFFPNVLESDNTPLPKTEKQHSCRNTSHIDLVPVDTSEKHRQ 1031
Query: 804 ELTVQSKAVEELTTSQAACIKDGALPISRFCRSDALPEKPLDGFEEILDS-PVLRRNQLR 862
+ + K E + DG E L++ +++RN R
Sbjct: 1032 D-NISCKLKERFSP---------------------------DGASETLETHSLVKRNSTR 1063
Query: 863 --EEDTTDETLDVNEIKEPLSPDDEYHNDLRDSELSPRLTNLIKSGVVPESPINENGASN 920
E+D N + E + DE +D ELSPRLTN IKSG+VPESP+ + G +N
Sbjct: 1064 VGEDDVA------NSVGEIVLSSDE--DDCEGLELSPRLTNFIKSGIVPESPVYDQGEAN 1115
Query: 921 NKG--RNPDLASPVKLCS--IQPSKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLL 976
+ P L+SP++ + S F KC+ Y +I +++TP
Sbjct: 1116 REEDLEFPQLSSPMRFSNELAGESSFPERKVQHKCNDY--------NIVSTTTELRTPQK 1167
Query: 977 KMNHTASAGGYSPTSPIAEETKTPLANL--ANSSCSRDWRLSSGDKSENVEPARKFKRLR 1034
++ A+ SPI E+ +TPLANL NSS +DWR+SSG+K E + RK KRLR
Sbjct: 1168 EVG-LANGTECLAVSPIPEDWRTPLANLTNTNSSARKDWRVSSGEKLETLRQPRKLKRLR 1226
Query: 1035 KVRDC------------------EQNKNSENMKENAVAPVVNLARRFLGMSPIQNKHGRG 1076
++ DC +++ ++++ N V A + +S +
Sbjct: 1227 RLGDCSSAVKENYPGITEADHIRSRSRGKKHIRGNCVIVKWKSAESWFTLSSVAFALVTK 1286
Query: 1077 RKKPM--DNMREYIEEEAEVSSEAEVSDDEEDDEDNNSYDDSFIDDRMNPTATSTQAESS 1134
+KK + D+++ +I+EEAEVSS AE+S DE +D +S++DSFIDD PTA +TQAES
Sbjct: 1287 KKKMIMDDDVQVFIDEEAEVSSGAEMSADENEDVTGDSFEDSFIDDGTMPTA-NTQAESG 1345
Query: 1135 GVDMMAIYRFLLLSLSFSHAHMH 1157
VDMMA+YR++ +SF + ++
Sbjct: 1346 KVDMMAVYRYIQPKISFFYCEVN 1368
>gi|449442122|ref|XP_004138831.1| PREDICTED: uncharacterized protein LOC101221910 [Cucumis sativus]
Length = 1384
Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/575 (72%), Positives = 485/575 (84%), Gaps = 22/575 (3%)
Query: 17 EFDWEAAVREIDTAC---------QSSKPSTSNSTN--------FNLCSKANKKPSTCKQ 59
+FDWEAAV+EID A S PS + S++ F L S+ N+K T +Q
Sbjct: 29 DFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSDAAAETPASFPL-SEENEKRGTSRQ 87
Query: 60 STLDKFFGN--LGPKPQGTEE-FNEGSSFDESLCHVQIDAEAAKTWIYP-VNVPVRDYQF 115
STL +F N K E+ + ++S+ V ID EAAKTWIYP +NVP+RDYQ
Sbjct: 88 STLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIYPGLNVPLRDYQL 147
Query: 116 AITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175
AITKTALFSNTLVALPTGLGKTLIAAVV+YN+FRWFP+GKIVF APSRPLV+QQIEACHN
Sbjct: 148 AITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHN 207
Query: 176 IVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEA 235
IVGIPQEWTIDMTG I+P KRASFW++KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEA
Sbjct: 208 IVGIPQEWTIDMTGMINPAKRASFWRSKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEA 267
Query: 236 HRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQD 295
HRA GNY+YC A+REL +PV LRILALTATPGSK Q IQ IIDNL+ISTL+YR+ESD D
Sbjct: 268 HRALGNYSYCVAVRELTKIPVPLRILALTATPGSKHQGIQQIIDNLHISTLQYRDESDHD 327
Query: 296 VSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLN 355
VS YVH+RKIELI+V MG++AVEI+N++ EV+RP+ ++L +IG+LQNRDY+TLSP DLLN
Sbjct: 328 VSPYVHDRKIELIQVAMGEDAVEIDNKLLEVMRPFVAKLRSIGILQNRDYRTLSPCDLLN 387
Query: 356 SRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFA 415
SRDKFRQAPPP P IK+ +VE +FG LITLYHIR+LLSSHGIRPA EMLEEKL+QGSFA
Sbjct: 388 SRDKFRQAPPPVHPHIKYHDVEGFFGVLITLYHIRKLLSSHGIRPASEMLEEKLQQGSFA 447
Query: 416 RFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
RFMSKN + +V+L+M++S++HGA SPKLSKM+EVL +HFKTKDP+ SRVIIFSNFRGSV
Sbjct: 448 RFMSKNHHVCEVRLIMEKSLTHGAPSPKLSKMMEVLTNHFKTKDPQDSRVIIFSNFRGSV 507
Query: 476 RDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEG 535
RDIM+AL+ I D+V+ATEFIGQSSGK+ KGQSQKVQQAVLEKFRAGG+NVIVAT IGEEG
Sbjct: 508 RDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEG 567
Query: 536 LDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
LDIMEVDLVICFDAN+SP+RMIQRMGRTGRKHDGR
Sbjct: 568 LDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGR 602
Score = 313 bits (802), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 226/588 (38%), Positives = 323/588 (54%), Gaps = 74/588 (12%)
Query: 571 IPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPTSDST 630
IPH +PEVQFV+LSI+Q+V GKKVKDDHA+ FK KLT ET L+ KYFHP D+
Sbjct: 698 IPHAIRPEVQFVKLSIKQFVRPGKKVKDDHAVQIS-FKNKLTDTETQLLLKYFHPCDDA- 755
Query: 631 WRPSLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQGLTFSRDDRTF-----VEDEVS 685
WRPSLIAFPHFQ PSR H V+HS RT +LID MQHLQGL FSR+ +F + + +
Sbjct: 756 WRPSLIAFPHFQTFPSRTHGVLHSCRTMVLIDTMQHLQGLHFSRESESFSVAQSINEVNA 815
Query: 686 SDKHLGLQTVEPCETDERDNFHGTKKVTDSELSTRTLGTQENHSMPQSCCKSPAAHAYLF 745
S L + V P E+S + EN+ + S C SP H+
Sbjct: 816 SKAELEVPLVYP------------------EVSLPQ-NSAENNCI--SGCCSPK-HS--- 850
Query: 746 GSDFISVDALGKVLIISVPALPFKELSHSKKKRAPDTLLLNHWKQDSSPLKTSDKNYDEL 805
++D +G S SK LLN + S ++T+ +L
Sbjct: 851 -----TIDIIG---------------SGSK--------LLNFSEPGSYCVRTAQ----DL 878
Query: 806 TVQSKAVEELTTSQAACIKDGALPISRFCRSDALPEKPLDGFEEILDSPVLRRNQLREED 865
V ++AV + TTSQ + D P L +K ++ E + +L+R +D
Sbjct: 879 IVPTEAVIKQTTSQTKILPDEFFPSPETDCVPVLEDKAMNLIETNHQNTLLKR-IFFNKD 937
Query: 866 TTDETLDVNEIKEPLSPDDEYHNDLRDSELSPRLTNLIKSGVVPESPINENGASNNK--- 922
T DE L V EI+ +P DE+ + +++LSPRLTNLI+SG VP+SPI++ G S +
Sbjct: 938 TVDEKL-VLEIEPQFTPADEF--SITETQLSPRLTNLIESGFVPDSPIDDCGYSRQRISE 994
Query: 923 GRNPDLASPVKLCSIQPSKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTA 982
P ++ +Q +S G E + GN I + + Q+ LK N +
Sbjct: 995 SAKSQFILPAQVDGLQLLNSSSSGINEMINCNAGFCAGN-DIFLASSEGQSSALKDNESV 1053
Query: 983 SAGGYSPTSPIAEETKTPLANLANSSCSRDWRLSSGDKSENVEPARKFKRLRKVRDCEQN 1042
++PTSP+A+E +TPLA +A+S + W +G+K +V KFKRLRKV D ++N
Sbjct: 1054 GIKSHAPTSPMADEIQTPLATIASSCDNEVWDSVNGEKFSSVPKPHKFKRLRKVGDMKKN 1113
Query: 1043 KNSENMKENAVAPVVNLARRFLGMSPIQNKHGRGRKKPMDNMREYIEEEAEVSSEAEVSD 1102
+N E+M + +++P+ N+ F + K G ++ DN++ +IEEEAEVSS+A +S
Sbjct: 1114 ENIESMAKTSISPLGNMVGTFSSTRQFKKKKRDGERRFDDNVKAFIEEEAEVSSDATISG 1173
Query: 1103 DEEDDEDNNSYDDSFIDDRMNPTATSTQAESSGVDMMAIYRFLLLSLS 1150
DE+D+ ++S DSFIDDR+N +A+STQ +S DMMAIYR LLS S
Sbjct: 1174 DEDDNIKSSS--DSFIDDRVNASASSTQDGTSKPDMMAIYRRSLLSQS 1219
>gi|357152779|ref|XP_003576233.1| PREDICTED: uncharacterized protein LOC100835661 [Brachypodium
distachyon]
Length = 1395
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/1142 (42%), Positives = 656/1142 (57%), Gaps = 141/1142 (12%)
Query: 87 ESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYN 146
E C V +D EA +TWIYP NV VR+YQ I + ALF+NTLVALPTGLGKT IAAVV+YN
Sbjct: 142 EGSCAVALDHEAVQTWIYPTNVEVREYQQYIVQKALFTNTLVALPTGLGKTFIAAVVMYN 201
Query: 147 FFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVF 206
+FRWFP+GKIVF APSRPLV QQIEACHN VGIPQEW IDM G +SP KR SFWK+KRVF
Sbjct: 202 YFRWFPEGKIVFTAPSRPLVTQQIEACHNTVGIPQEWAIDMKGNLSPEKRTSFWKSKRVF 261
Query: 207 FVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266
FVTPQ+LE DI+SG C++K LVCLVIDEAHRA+GN++YC+A+REL++ V LRILALTAT
Sbjct: 262 FVTPQILENDIRSGICMVKQLVCLVIDEAHRASGNHSYCSAVRELVASNVPLRILALTAT 321
Query: 267 PGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM--------GQEAVE 318
PGSK IQ +I+NL+IS L +R+ESD +V YV+ R ++L++V M G + +
Sbjct: 322 PGSKHPDIQGVINNLHISELIHRDESDPEVQRYVNTRTVDLVKVCMNCGKSVPVGSDTAQ 381
Query: 319 INNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEA 378
IN + E+IRP+ ++L A G++ NRD +P L ++KF QAP PNLP K E+
Sbjct: 382 INEMLLEIIRPHIAQLRAAGVIDNRDASNWTPHQLHILKEKFNQAPLPNLPLEKKKEIRR 441
Query: 379 YFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHG 438
F A+++L I +LL SHGI+PA++ +E +G++ F S+NE K K +M + G
Sbjct: 442 SFAAVVSLCRISKLLLSHGIKPAHQSIEATWSEGAWNLF-SRNEVFIKAKEMMGSIVGKG 500
Query: 439 AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG-DLVKATEFIGQ 497
SPK+ K++EVL+DHF K+PK SRVIIFS++R SV++I+ AL+ G + + +FIGQ
Sbjct: 501 VPSPKVHKLVEVLLDHFHKKNPKDSRVIIFSHYRESVKEILGALSDSGTGIFRPAQFIGQ 560
Query: 498 -SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
S+G KGQ+QK+QQA+L+KFR+G YN++VATSIGEEGLDIMEVDLVICFDANVSPLRM
Sbjct: 561 TSTGDRLKGQTQKMQQAILQKFRSGEYNILVATSIGEEGLDIMEVDLVICFDANVSPLRM 620
Query: 557 IQRMGRTGRKHDGR----------------------------------------IPHIFK 576
IQRMGRTGRKH+GR +PH++K
Sbjct: 621 IQRMGRTGRKHEGRVDILSWQELQGYTRKQGSTRTMKNLLRKRDKFDYHASPRMVPHVYK 680
Query: 577 PEVQFVELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPTSDSTWRPSLI 636
PEV++V+LSIE+YV KK+K D + +PI KL+ + LIA+YF + W+PSL+
Sbjct: 681 PEVKYVKLSIEKYVPHSKKIKVDASCVSPILN-KLSEEDGQLIARYFIACKEDIWKPSLV 739
Query: 637 AFPHFQALPSRVHKVMHSFR-TGMLIDMMQHLQGLTFSRDDRTFVEDEVSSDKHLGLQTV 695
AFP FQ P ++KV HSFR T ML+D MQ LQ L+FS T+V+ + + TV
Sbjct: 740 AFPSFQVSPCDIYKVPHSFRTTDMLVDAMQQLQDLSFSTTKNTYVQCGSPLRESADVATV 799
Query: 696 EPCETDERDNFHGTKKVTDSELSTRTLGTQENHSMPQSCCKSPAAHAYLFGSDFISVDAL 755
+ D+ +V S+ + ++ +P S H++ F D+++VD
Sbjct: 800 K----DQ------APEVECPYFSSGEVALSKSVCVPSSPVNKYPLHSF-FSGDYVTVDVG 848
Query: 756 GKVLIISVPALP-FKELSHSKKKRAPDTLLLNHWKQDSSPLKTSDKNYDELTVQSKAVEE 814
G V I VPALP E++ K + N S P T+D Y S+ +
Sbjct: 849 GFVSITFVPALPRSAEINKDKTNINWQQKVQNKTTPFSGP--TTDGAY------SRNLIF 900
Query: 815 LTTSQAACIKDGALPISRFCRSDALPEKPLDGF---EEILDSPVLRRNQLREEDTTDETL 871
+T + + + + P P + F E DSP +
Sbjct: 901 VTNASSLAPHSPEYSKHDHDKHNIHPGSPSNTFTSPREKWDSPCNTK------------- 947
Query: 872 DVNEIKEPLSPDDEYHNDLRDSELSPRLTNLIKSGVVPESPINE--------NGASN--- 920
P SP D ELSPRLT+ I+ G+VPESPI + + A+N
Sbjct: 948 -------PGSPVLSVQQD--SEELSPRLTHYIEEGIVPESPILDVNHQQLEIDSAANACF 998
Query: 921 ------NKGRNPDLASPVKLCSIQPSKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTP 974
+K + + C P F G+ +S + + + + + P
Sbjct: 999 IPKVCSSKTHGQGVQTNGSGCQNGPLSFWKKGQISAGVTEFPSSSRDDVLDKIQARTEEP 1058
Query: 975 LLKMNHTASAGGYSPTSPIAEETKTPLANLANSSCSRDWRLSS--GDKSENVEPARKFKR 1032
+ N SP A TP ANL S S +W+++S GD S +V+ A K++R
Sbjct: 1059 MCPSNAKM-------CSPAAH---TPTANLLCDSLSDEWQVNSVVGDTSGSVQQAPKYRR 1108
Query: 1033 LRKVRDCEQNKNSENMKENAVAPVVNLARRFL-GMSPIQNKHGRGRKKPMDNMREYIEEE 1091
L K D +K + + N RF+ G + NK +G+ K + YI+EE
Sbjct: 1109 LCKFGD--------KIKRVSSVSLNNRYDRFVEGQYDLANKRNKGKAK--RRLDIYIDEE 1158
Query: 1092 AEVSSEAEVSDDEEDDEDNNSYDDSFIDDRMNPTATSTQAESSGV---DMMAIYRFLLLS 1148
EVS +A +S DE+D + ++ Y+DSFIDD+ PT TQ+E G DMMA YR LL+
Sbjct: 1159 VEVSEDANISVDEDDGQSDDKYEDSFIDDQTTPTGQFTQSEQGGQNTGDMMAFYRRSLLT 1218
Query: 1149 LS 1150
S
Sbjct: 1219 QS 1220
>gi|62734194|gb|AAX96303.1| Similar to probable ATP-dependent RNA helicase - fission yeast
(Schizosaccharomyces pombe) [Oryza sativa Japonica Group]
gi|77548994|gb|ABA91791.1| Type III restriction enzyme, res subunit family protein, expressed
[Oryza sativa Japonica Group]
Length = 1488
Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/1168 (41%), Positives = 657/1168 (56%), Gaps = 183/1168 (15%)
Query: 90 CHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR 149
C V +D EAA+TWIYP NV VR+YQ + ALF+NTLVALPTGLGKT IAAVV+YN+FR
Sbjct: 228 CGVALDHEAARTWIYPTNVQVREYQKKFVEKALFTNTLVALPTGLGKTFIAAVVMYNYFR 287
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
WFP+GKIVF AP+RPLV QQIEACHN VGIPQEWTID+ G +SP+KR+ FWK+KRVFFVT
Sbjct: 288 WFPEGKIVFTAPTRPLVTQQIEACHNTVGIPQEWTIDLKGNLSPSKRSCFWKSKRVFFVT 347
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQVL+ DIQSG C++ LVCLVIDEAHRA+ NYAYC +REL + V LRILALTATPGS
Sbjct: 348 PQVLQNDIQSGICMVNQLVCLVIDEAHRASRNYAYCVVVRELEAARVPLRILALTATPGS 407
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM--------GQEAVEINN 321
KQ IQ++I+NL IS L + +ESD +VS Y+ R +E +EV M G EA ++N+
Sbjct: 408 KQPAIQNVINNLRISELVHCDESDPEVSRYIQRRTVEPLEVCMDSDKFIPVGDEAEQVND 467
Query: 322 RIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFG 381
++ +VIRP+ +L + ++ +RD SP L +DKF QAPPPN+P E+ F
Sbjct: 468 KLLDVIRPHLVKLRSARVIDHRDASNWSPHQLRMLKDKFDQAPPPNIPLADKKEIGISFQ 527
Query: 382 ALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQS 441
AL LY I ++L S+GI+ A++ +E K K+GS+ + +++N +VK M+ +S G S
Sbjct: 528 ALTLLYGIMKMLLSYGIKAAHQSIEAKYKEGSW-KVLTRNNTFLEVKKTMENFLSQGILS 586
Query: 442 PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI-GDLVKATEFIGQSS- 499
PK+ ++EVL+DHF+ K+PK SRVIIF+++R V++I+ +L I G+LV+ FIGQSS
Sbjct: 587 PKVRTLVEVLLDHFR-KNPKDSRVIIFAHYRECVKEILCSLRNIDGELVRPAAFIGQSST 645
Query: 500 GKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQR 559
G KGQ+QK+QQA+L KFR+G YN++VATSIGEEGLDIMEVDLV+CFDAN+S LRMIQR
Sbjct: 646 GDQLKGQTQKMQQAILHKFRSGEYNILVATSIGEEGLDIMEVDLVVCFDANISALRMIQR 705
Query: 560 MGRTGRKHDGR---------------------------------------IPHIFKPEVQ 580
MGRTGRK++GR +PH++ PEV+
Sbjct: 706 MGRTGRKNEGRVDILFLEMKGYLSKQGNTKTMKKLLRDRRRFEYHDSPRMVPHVYNPEVK 765
Query: 581 FVELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPTSDSTWRPSLIAFPH 640
FVELSIE+Y+ KK K D + +PIF K++ + LIA+YF + W+PSL+ FP
Sbjct: 766 FVELSIEKYIPCSKKSKVDVNVASPIFN-KMSEDDGRLIARYFGACKEDFWKPSLVTFPS 824
Query: 641 FQALPSRVHKVMHSFR-TGMLIDMMQHLQGLTFSRD----------DRTFVEDEVSSDKH 689
FQ P +++V HSFR T MLID MQ LQ L+FSR D V DE
Sbjct: 825 FQVSPCDIYRVPHSFRTTNMLIDAMQQLQDLSFSRTKCASPLEGPADVPVVMDEAPE--- 881
Query: 690 LGLQTVEPCETDERDNFHGTKKVTDSELSTRTLGTQE-----NHSMPQSCCKSPAAHAYL 744
GL + G+K+V E + + E N +P K H++
Sbjct: 882 -GLFGAD-----------GSKEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSF- 928
Query: 745 FGSDFISVDALGKVLIISVPALPFKELSHSKKKRAPDTLLLNHWKQDSSPLKTSDKNYDE 804
F D++++D G V I VPALP H + +W Q TS K +
Sbjct: 929 FSGDYVAMDVSGYVSITFVPALPRTSEFHKDARNV-------NWHQKVQNKTTSVKLAAD 981
Query: 805 L---TVQSKAVEELTTSQAACIKD--GALPIS-----RFCRSD------ALPEKPLDGFE 848
+ T++ + S + D G +P S R+ R+D P K L +
Sbjct: 982 ISRPTIEFDCLAGFAYSSKPILTDEFGLVPHSPEYTERYGRTDDRHVHGTPPPKTLVSPK 1041
Query: 849 EILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDDEYHNDLRDSELSPRLTNLIKSGVV 908
EI P + P+SP D+ ELSPRLT I+ G+V
Sbjct: 1042 EICHKPCNSK--------------------PVSPGLSGQEDM---ELSPRLTYYIEEGIV 1078
Query: 909 PESPINENGASN---NKGRNPDL--------------ASPVKLCSIQ-PSKFASLGK--T 948
PESP+ E G + + N D A +L S P F G+ +
Sbjct: 1079 PESPMLEVGHKHLETDSAANADFVQQKVDFSKSHSEGAKANELKSRNGPLNFEGKGQFFS 1138
Query: 949 EKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTASAGGYSPTSPIAEETKTPLANLANSS 1008
E V + + + NK+ + H ++ +SP + TP+ANL S
Sbjct: 1139 EISKLAVSPGENALDQTQANKE------ERMHPSNVKIHSPAA------HTPMANLLCDS 1186
Query: 1009 CSRDWRL-SSGDKSENVEPARKFKRLRKVRDCEQNKNSENMKEN---AVAPVVNLARRFL 1064
S DW+L S GD +V A K+KRL K D + +S ++ + A N A +
Sbjct: 1187 FSDDWQLRSGGDTPGSVREAPKYKRLCKYADKIKRVSSMSLDDRYDIAAGGNHNFATK-- 1244
Query: 1065 GMSPIQNKHGRGRKKPMDNMREYIEEEAEVSSEAEVSDDEEDDEDNNSYDDSFIDDRMNP 1124
R +++ + +I++EAEVS +A+VS DE +D ++Y+DSFI+D+ P
Sbjct: 1245 ----------RNKRRAKMCLDTFIDDEAEVSEDADVSADEGNDHSEDNYEDSFINDQATP 1294
Query: 1125 TATSTQA----ESSGVDMMAIYRFLLLS 1148
T TQ+ E+SG DMMA YR LL+
Sbjct: 1295 TGQFTQSVHHGENSG-DMMAFYRRSLLT 1321
>gi|168001533|ref|XP_001753469.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695348|gb|EDQ81692.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 624
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/570 (57%), Positives = 414/570 (72%), Gaps = 51/570 (8%)
Query: 14 DDDEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLGPKP 73
DDD+FDWEAAV EID C S+ + ++ T S L
Sbjct: 9 DDDDFDWEAAVAEIDDVCLKSQRIIAPASAI----------VTANASALAS--------- 49
Query: 74 QGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTG 133
ID A TWIYP N+P R+YQF ITKTALFSNTLV+LPTG
Sbjct: 50 -------------------DIDYTTASTWIYPANIPYREYQFNITKTALFSNTLVSLPTG 90
Query: 134 LGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISP 193
LGKTLIAAVV+YN+FRWFP GKIVF APSRPLVMQQIEACHNI+GIPQE IDMTGQ+SP
Sbjct: 91 LGKTLIAAVVMYNYFRWFPTGKIVFTAPSRPLVMQQIEACHNIMGIPQEMAIDMTGQMSP 150
Query: 194 TKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS 253
+RA W+++RVF+VTPQ LEKDIQSGTC + +VCLV+DEAHRATGN++YC REL++
Sbjct: 151 PQRAEEWRSRRVFYVTPQCLEKDIQSGTCPVNDIVCLVVDEAHRATGNFSYCVVTRELLA 210
Query: 254 VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMG 313
++ RILALTATPGSKQ TIQ ++DNL +S LEYR+E+D DVS Y HNRK+ELI+V+M
Sbjct: 211 RNIKFRILALTATPGSKQVTIQAVVDNLLMSCLEYRDENDPDVSQYTHNRKLELIQVKMN 270
Query: 314 QEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKF 373
E +I + E+++P +L +G+ +R++ LSP + + +RDKFRQAPP +L Q ++
Sbjct: 271 AETNKIKDIYLEILKPVVDKLYHLGVFYSREFARLSPFEFITARDKFRQAPPQSLQQHQY 330
Query: 374 GEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQ 433
EVE++F ITLYHI +LL SHG+RPA EML+ K+++G+ R +++N ++++K LMQ+
Sbjct: 331 REVESFFSMAITLYHIYKLLHSHGVRPALEMLQTKMQEGTL-RLLARNSRLQEIKNLMQE 389
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
S+ HGA SPKL K+ +++ HF+ DP +RVIIF+NFR SV+DI+ AL +G +VKA E
Sbjct: 390 SVGHGAPSPKLVKLEAIILQHFRDHDPLTTRVIIFTNFRESVKDILEALLKVGHIVKAME 449
Query: 494 FIGQSS------------GKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
FIGQSS GKASKGQ+QK+QQAVL+KFR+GG+N IVATSI EEGLDIMEV
Sbjct: 450 FIGQSSVIGGLRMGHVYPGKASKGQTQKMQQAVLQKFRSGGFNTIVATSIAEEGLDIMEV 509
Query: 542 DLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
DLVICFDAN+SPLRMIQRMGRTGRK DGR+
Sbjct: 510 DLVICFDANISPLRMIQRMGRTGRKRDGRV 539
>gi|147857337|emb|CAN79195.1| hypothetical protein VITISV_000237 [Vitis vinifera]
Length = 808
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 415/882 (47%), Positives = 512/882 (58%), Gaps = 182/882 (20%)
Query: 371 IKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLL 430
+K+GEVE YFGALITLYHIR+LLSSHGIRPA+EMLEEK++QG FAR MSKNE + K K L
Sbjct: 1 MKYGEVEGYFGALITLYHIRKLLSSHGIRPAHEMLEEKMRQGPFARLMSKNEVLWKAKCL 60
Query: 431 MQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVI-------IFSNFRGSV----RDIM 479
MQQS+S+G +PKLSKML++L+DHF K +I +F+ GS+ RDIM
Sbjct: 61 MQQSLSNGTPNPKLSKMLDILIDHFS----KWIHIIFLFAFDVVFALCCGSILALWRDIM 116
Query: 480 NALATIGDLVKATEFIGQSSG--------------------------------------- 500
+ALA IG+ VKAT+FIGQSSG
Sbjct: 117 DALAKIGESVKATQFIGQSSGLYSCPFTFLFASRLFMLLGSNGKSGCFFNIFSQRGKDCV 176
Query: 501 --KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558
KASKGQSQKVQQAVLEKFRAGG+NVIVATSIGEEGLDIMEVDL
Sbjct: 177 ERKASKGQSQKVQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDL--------------- 221
Query: 559 RMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDL 618
IPHIFKPEVQFVELSIEQ+V RG+K KDDH I PI +KLT E
Sbjct: 222 ------------IPHIFKPEVQFVELSIEQFVPRGRKGKDDHPIQAPISTDKLTNGEVST 269
Query: 619 IAKYFHPTSDSTWRPSLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQGLTFSRDDRT 678
T + Q SR+ + + G+
Sbjct: 270 NEHLGVETVE-------------QYDKSRMGNITFNNSNGLC-------------NKPCV 303
Query: 679 FVEDEVSSDKHLGLQTVEPCETDERDNF--------HGTKKVTDSELS-TRTLGTQENHS 729
F +DE S D+HL ++TVE E +D+ ++++ SE S R T+E HS
Sbjct: 304 FRKDEASMDEHLAVETVEQHEESRKDSIIFGDSPKAQPIRELSYSEESPIRNTKTKEKHS 363
Query: 730 MPQSCCKSPAAHAYLFGSDFISVDALGKVLIISVPALPFKELSHSKKKRAPDTLLLNHWK 789
M S +P H+YLFGSDF+SVD LG VLI+SVP +P KE+SHSK A ++LLN K
Sbjct: 364 MSSSQGNNPHVHSYLFGSDFVSVDTLGNVLILSVPLIPSKEVSHSKCASASSSMLLNCLK 423
Query: 790 QDSSPLKTSDKNYDELTVQSKAVEELTTS-QAACIKDGALPISRFCRSDALPEKPLDGFE 848
QDS TS + +++ KAV L TS QA C D L IS+ S EK LDG E
Sbjct: 424 QDSCHSGTSQGQHKGQSMEEKAVANLRTSGQARCTMDETLLISKLHYSLGQQEKKLDGVE 483
Query: 849 EILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDDEYHNDLRDSELSPRLTNLIKSGVV 908
EI+ +P+L+ + E DT ETL N K P+ E +D+ D++LSPRLTNLIKSGVV
Sbjct: 484 EIVQTPILKGSLSHEGDTAVETLVAN--KTPIFLAAESSDDIGDTDLSPRLTNLIKSGVV 541
Query: 909 PESPINENGA------------------------------------------SNNKGRN- 925
PESPINE+G SN + RN
Sbjct: 542 PESPINESGQYSSSNIDMLLYICKVGGWNVVCVKLSYKGKVHAEKTLDFAGPSNGRPRNE 601
Query: 926 ---PDLASPVKLCSIQPSKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLKMNHTA 982
PDL SP K+ S + GK EK SP++ + +P+L+ + +A
Sbjct: 602 FLVPDLVSPAKVLS----EMLLTGKNEKIPWN----------SPISNGMHSPILRPDISA 647
Query: 983 SAGGYSPTSPIAEETKTPLANLANSSCSRDWRLSSGDKSENVEPARKFKRLRKVRDCEQN 1042
A G +P+SPI EE KTPLANL N+SCS+DW LSSGDKS +V+ RKFKRLRK D Q
Sbjct: 648 KARGSNPSSPIVEEVKTPLANLTNNSCSKDWHLSSGDKSASVKQERKFKRLRKYGDTGQR 707
Query: 1043 KNSENMKENAVAPVVNLARRFLGMSPIQNKHGRGRKKPMDNMREYIEEEAEVSSEAEVSD 1102
+N ++MKEN++ P NLA + PI+NKH RG++KP+DN+R +IEEEAEVSSEAEVSD
Sbjct: 708 RNMKSMKENSIDPSGNLAETS-SIIPIRNKHNRGKQKPVDNVRAFIEEEAEVSSEAEVSD 766
Query: 1103 DEEDDEDNNSYDDSFIDDRMNPTATSTQAESSGVDMMAIYRF 1144
DEEDD++NNSYDDSFIDDR++PTATSTQAE S DMMAIYRF
Sbjct: 767 DEEDDQNNNSYDDSFIDDRIDPTATSTQAEDSRSDMMAIYRF 808
>gi|359493214|ref|XP_003634544.1| PREDICTED: uncharacterized protein LOC100254868 [Vitis vinifera]
Length = 982
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 389/767 (50%), Positives = 476/767 (62%), Gaps = 133/767 (17%)
Query: 477 DIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGL 536
DIM+ALA IG+ VKAT+FIGQSSGKASKGQSQKVQQAVLEKFRAGG+NVIVATSIGEEGL
Sbjct: 250 DIMDALAKIGESVKATQFIGQSSGKASKGQSQKVQQAVLEKFRAGGFNVIVATSIGEEGL 309
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKV 596
DIMEVDL IPHIFKPEVQFVELSIEQ+V RG+K
Sbjct: 310 DIMEVDL---------------------------IPHIFKPEVQFVELSIEQFVPRGRKG 342
Query: 597 KDDHAITTPIFKEKLTAAETDLIAKYFHPTSDSTWRPSLIAFPHFQALPSRVHKVMHSFR 656
KDDH I PI +KLT ET+++AKYF T TWRPSLIAFP FQA P+ VHK+ HSFR
Sbjct: 343 KDDHPIQAPISTDKLTNVETEVLAKYFGTTGKITWRPSLIAFPPFQAFPTGVHKIPHSFR 402
Query: 657 TGMLIDMMQHLQGLTFSRDDRT-FVEDEVSSDKHLGLQTVE------------------- 696
T +LIDMMQHLQGL+FS + +T FVE EVS+++HLG++TVE
Sbjct: 403 TEILIDMMQHLQGLSFSGNSKTFFVEGEVSTNEHLGVETVEQYDKSRMGNITFNNSNGLC 462
Query: 697 --PC---------------------ETDERDNF--------HGTKKVTDSELS-TRTLGT 724
PC E +D+ ++++ SE S R T
Sbjct: 463 NKPCVFRKDEASMDEHLAVETVEQHEESRKDSIIFGDSPKAQPIRELSYSEESPIRNTKT 522
Query: 725 QENHSMPQSCCKSPAAHAYLFGSDFISVDALGKVLIISVPALPFKELSHSKKKRAPDTLL 784
+E HSM S +P H+YLFGSDF+SVD LG VLI+SVP +P KE+SHSK A ++L
Sbjct: 523 KEKHSMSSSQGNNPHVHSYLFGSDFVSVDTLGNVLILSVPLIPSKEVSHSKCASASSSML 582
Query: 785 LNHWKQDSSPLKTSDKNYDELTVQSKAVEELTTS-QAACIKDGALPISRFCRSDALPEKP 843
LN KQDS TS + +++ KAV L TS QA C D L IS+ S EK
Sbjct: 583 LNCLKQDSCHSGTSQGQHKGQSMEEKAVANLRTSGQARCTMDETLLISKLHYSLGQQEKK 642
Query: 844 LDGFEEILDSPVLRRNQLREEDTTDETLDVNEIKEPLSPDDEYHNDLRDSELSPRLTNLI 903
LDG EEI+ +P+L+ + E DT ETL N K P+ E +D+ D++LSPRLTNLI
Sbjct: 643 LDGVEEIVQTPILKGSLSHEGDTAVETLVAN--KTPIFLAAESSDDIGDTDLSPRLTNLI 700
Query: 904 KSGVVPESPINENGA------------------------------------------SNN 921
KSGVVPESPINE+G SN
Sbjct: 701 KSGVVPESPINESGQYSSSNIDMLLYICKVGGWNVVCVKLSYKGKVHAEKTLDFAGPSNG 760
Query: 922 KGRN----PDLASPVKLCSIQPSKFASLGKTEKCSKYVRASQGNVSISPVNKKIQTPLLK 977
+ RN PDL SP K+ S+ GK EK + V S + SP++ + +P+L+
Sbjct: 761 RPRNEFLVPDLVSPAKVL----SEMLLTGKNEKVTLDVSTSGQDTLNSPISNGMHSPILR 816
Query: 978 MNHTASAGGYSPTSPIAEETKTPLANLANSSCSRDWRLSSGDKSENVEPARKFKRLRKVR 1037
+ +A A G +P+SPI EE KTPLANL N+SCS+DW LSSGDKS +V+ RKFKRLRK
Sbjct: 817 PDISAKARGSNPSSPIVEEVKTPLANLTNNSCSKDWHLSSGDKSASVKQERKFKRLRKYG 876
Query: 1038 DCEQNKNSENMKENAVAPVVNLARRFLGMSPIQNKHGRGRKKPMDNMREYIEEEAEVSSE 1097
D Q +N ++MKEN++ P NLA + PI+NKH RG++KP+DN+R +IEEEAEVSSE
Sbjct: 877 DTGQRRNMKSMKENSIDPSGNLAETS-SIIPIRNKHNRGKQKPVDNVRAFIEEEAEVSSE 935
Query: 1098 AEVSDDEEDDEDNNSYDDSFIDDRMNPTATSTQAESSGVDMMAIYRF 1144
AEVSDDEEDD++NNSYDDSFIDDR++PTATSTQAE S DMMAIYRF
Sbjct: 936 AEVSDDEEDDQNNNSYDDSFIDDRIDPTATSTQAEDSRSDMMAIYRF 982
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
Query: 348 LSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEE 407
LSP DLLNSRDKFRQAPP LP +K+GEVE YFGALITLYHIR+LLSSHGIRPA+EMLEE
Sbjct: 185 LSPCDLLNSRDKFRQAPPLALPHMKYGEVEGYFGALITLYHIRKLLSSHGIRPAHEMLEE 244
Query: 408 KLKQGSFARFMSK-NEDIRKVKLLMQQS 434
K++QG ++K E ++ + + Q S
Sbjct: 245 KMRQGDIMDALAKIGESVKATQFIGQSS 272
>gi|218185362|gb|EEC67789.1| hypothetical protein OsI_35346 [Oryza sativa Indica Group]
Length = 648
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 288/496 (58%), Positives = 375/496 (75%), Gaps = 12/496 (2%)
Query: 90 CHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR 149
C V +D EAA+TWIYP NV VR+YQ + ALF+NTLVALPTGLGKT IAAVV+YN+FR
Sbjct: 150 CAVALDHEAARTWIYPTNVQVREYQKKFVEKALFTNTLVALPTGLGKTFIAAVVMYNYFR 209
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
WFP+GKIVF AP+RPLV QQIEACHN VGIPQEWTID+ G +SP+KR+ FWK+KRVFFVT
Sbjct: 210 WFPEGKIVFTAPTRPLVTQQIEACHNTVGIPQEWTIDLKGNLSPSKRSCFWKSKRVFFVT 269
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQVL+ DIQSG C++ LVCLVIDEAHRA+ NYAYC +REL + V LRILALTATPGS
Sbjct: 270 PQVLQNDIQSGICMVNQLVCLVIDEAHRASRNYAYCVVVRELEAARVPLRILALTATPGS 329
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM--------GQEAVEINN 321
KQ IQ++I+NL IS L + +ESD +VS Y+ R +E +EV M G EA ++N+
Sbjct: 330 KQPAIQNVINNLRISELVHCDESDPEVSRYIQRRTVEPLEVCMDSDKFIPVGDEAEQVND 389
Query: 322 RIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFG 381
++ +VIRP+ +L + ++ +RD SP L +DKF QAPPPN+P E+ F
Sbjct: 390 KLLDVIRPHLVKLRSARVIDHRDASNWSPHQLRMLKDKFDQAPPPNIPLADKKEIGISFQ 449
Query: 382 ALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQS 441
AL LY I ++L S+GI+ A++ +E K K+GS+ + +++N +VK M+ +S G S
Sbjct: 450 ALTLLYGIMKMLLSYGIKAAHQSIEAKYKEGSW-KVLTRNNTFLEVKKTMENFLSQGILS 508
Query: 442 PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI-GDLVKATEFIGQSS- 499
PK+ ++EVL+DHF+ K+PK SRVIIF+++R V++I+ +L I G+LV+ FIGQSS
Sbjct: 509 PKVRTLVEVLLDHFR-KNPKDSRVIIFAHYRECVKEILCSLRNIDGELVRPAAFIGQSST 567
Query: 500 GKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQR 559
G KGQ+QK+QQA+L KFR+G YN++VATSIGEEGLDIMEVDLV+CFDAN+S LRMIQR
Sbjct: 568 GDQLKGQTQKMQQAILHKFRSGEYNILVATSIGEEGLDIMEVDLVVCFDANISALRMIQR 627
Query: 560 MGRTGRKHDGRIPHIF 575
MGRTGRK++GR+ +F
Sbjct: 628 MGRTGRKNEGRVDILF 643
>gi|222615621|gb|EEE51753.1| hypothetical protein OsJ_33185 [Oryza sativa Japonica Group]
Length = 726
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 288/496 (58%), Positives = 375/496 (75%), Gaps = 12/496 (2%)
Query: 90 CHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR 149
C V +D EAA+TWIYP NV VR+YQ + ALF+NTLVALPTGLGKT IAAVV+YN+FR
Sbjct: 228 CGVALDHEAARTWIYPTNVQVREYQKKFVEKALFTNTLVALPTGLGKTFIAAVVMYNYFR 287
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
WFP+GKIVF AP+RPLV QQIEACHN VGIPQEWTID+ G +SP+KR+ FWK+KRVFFVT
Sbjct: 288 WFPEGKIVFTAPTRPLVTQQIEACHNTVGIPQEWTIDLKGNLSPSKRSCFWKSKRVFFVT 347
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQVL+ DIQSG C++ LVCLVIDEAHRA+ NYAYC +REL + V LRILALTATPGS
Sbjct: 348 PQVLQNDIQSGICMVNQLVCLVIDEAHRASRNYAYCVVVRELEAARVPLRILALTATPGS 407
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM--------GQEAVEINN 321
KQ IQ++I+NL IS L + +ESD +VS Y+ R +E +EV M G EA ++N+
Sbjct: 408 KQPAIQNVINNLRISELVHCDESDPEVSRYIQRRTVEPLEVCMDSDKFIPVGDEAEQVND 467
Query: 322 RIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFG 381
++ +VIRP+ +L + ++ +RD SP L +DKF QAPPPN+P E+ F
Sbjct: 468 KLLDVIRPHLVKLRSARVIDHRDASNWSPHQLRMLKDKFDQAPPPNIPLADKKEIGISFQ 527
Query: 382 ALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQS 441
AL LY I ++L S+GI+ A++ +E K K+GS+ + +++N +VK M+ +S G S
Sbjct: 528 ALTLLYGIMKMLLSYGIKAAHQSIEAKYKEGSW-KVLTRNNTFLEVKKTMENFLSQGILS 586
Query: 442 PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI-GDLVKATEFIGQSS- 499
PK+ ++EVL+DHF+ K+PK SRVIIF+++R V++I+ +L I G+LV+ FIGQSS
Sbjct: 587 PKVRTLVEVLLDHFR-KNPKDSRVIIFAHYRECVKEILCSLRNIDGELVRPAAFIGQSST 645
Query: 500 GKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQR 559
G KGQ+QK+QQA+L KFR+G YN++VATSIGEEGLDIMEVDLV+CFDAN+S LRMIQR
Sbjct: 646 GDQLKGQTQKMQQAILHKFRSGEYNILVATSIGEEGLDIMEVDLVVCFDANISALRMIQR 705
Query: 560 MGRTGRKHDGRIPHIF 575
MGRTGRK++GR+ +F
Sbjct: 706 MGRTGRKNEGRVDILF 721
>gi|224135611|ref|XP_002327261.1| predicted protein [Populus trichocarpa]
gi|222835631|gb|EEE74066.1| predicted protein [Populus trichocarpa]
Length = 299
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 251/299 (83%), Positives = 277/299 (92%)
Query: 107 NVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLV 166
NVP+R+YQ AITKTALF+NTLVALPTGLGKTLIAAVV+YN+FRWFPDGKIVFAAPSRPLV
Sbjct: 1 NVPLREYQLAITKTALFTNTLVALPTGLGKTLIAAVVMYNYFRWFPDGKIVFAAPSRPLV 60
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKY 226
MQQIEACHNIVGIPQEWTIDMTGQ+ PTKRA FWKTKRVFFVTPQVLEKDIQSGTCL K+
Sbjct: 61 MQQIEACHNIVGIPQEWTIDMTGQVCPTKRACFWKTKRVFFVTPQVLEKDIQSGTCLAKH 120
Query: 227 LVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTL 286
LVCLVIDEAHRA+GNY+YC AIREL+++PVQLRILALTATPGSKQ +QHIIDNL IS L
Sbjct: 121 LVCLVIDEAHRASGNYSYCVAIRELLAIPVQLRILALTATPGSKQPAVQHIIDNLQISAL 180
Query: 287 EYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQ 346
EYRNESD DV YVH+RKIELIEV +G+EAV+IN R+ EVIRPY +RLS +GLLQNRDYQ
Sbjct: 181 EYRNESDPDVIPYVHDRKIELIEVALGKEAVDINKRLLEVIRPYVARLSTLGLLQNRDYQ 240
Query: 347 TLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEML 405
TLSP DLLNSRDKFR+APP +LPQ ++GE+EA FG LITLYHIR+LLSSHGIRPAYEML
Sbjct: 241 TLSPPDLLNSRDKFRRAPPLDLPQNRYGEIEACFGGLITLYHIRKLLSSHGIRPAYEML 299
>gi|405953921|gb|EKC21486.1| Fanconi anemia group M protein [Crassostrea gigas]
Length = 2327
Score = 491 bits (1264), Expect = e-135, Method: Compositional matrix adjust.
Identities = 245/537 (45%), Positives = 337/537 (62%), Gaps = 23/537 (4%)
Query: 57 CKQSTLDKFFGNLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFA 116
C+ D NLG G + + + L D A K WIYP N PVRDYQ+
Sbjct: 65 CQTENDDHEEENLGNISLGADHLS-STQVQSQLGQTGFDKVAGKLWIYPTNYPVRDYQYN 123
Query: 117 ITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNI 176
I + ALF NT+V LPTGLGKT IA+VV++N++RW+P GK+VF AP++PLV QQIEAC+NI
Sbjct: 124 IVQQALFKNTMVTLPTGLGKTFIASVVMFNYYRWYPQGKVVFMAPTKPLVAQQIEACYNI 183
Query: 177 VGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAH 236
+GIPQE T +MTG + P +R W+ KRVFF+TPQVL D+ GTC + + C+V+DEAH
Sbjct: 184 MGIPQEHTAEMTGSMPPQERRRAWEEKRVFFLTPQVLTNDLSRGTCPAQQVKCVVVDEAH 243
Query: 237 RATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDV 296
+A GN+AYC +RELM+ + R+LAL+ATPGS + +Q ++ NL IS +E R E D+
Sbjct: 244 KALGNHAYCQVVRELMNYSNEFRVLALSATPGSDIKAVQQVLSNLLISHIELRTEDSIDI 303
Query: 297 SSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNS 356
Y NR+++ I V QE E+ NR +++ +L G++ NR+ +LS LL S
Sbjct: 304 KQYSFNRQVDKIIVPFSQELTEVKNRYIKIMDVIVGKLKRYGVIYNREVTSLSKFVLLKS 363
Query: 357 RDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK----QG 412
R+ FRQ PP LP ++G VE F I+LYH L+ HG+R Y L+ +K G
Sbjct: 364 REAFRQNPPHRLPVTQYGMVEGDFALAISLYHGYELVQLHGLRSLYNFLDGAMKGDKGHG 423
Query: 413 SFARFMSKNEDIRKVKLLMQQSIS-----HGAQS-----PKLSKMLEVLVDHFKT----- 457
+ K D + ++ + AQ+ PKL+K+ EV++DHFK+
Sbjct: 424 RTKTELMKIPDFGDLMNMLHEKFGKMNGQENAQAINLGHPKLAKLEEVVLDHFKSVEGSG 483
Query: 458 --KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSS-GKASKGQSQKVQQAV 514
++ + +R++IFS +R SV +I N L VKA FIGQSS GKA+KG +QK Q V
Sbjct: 484 TEQNEQTTRIMIFSQYRDSVEEITNMLRRHEPKVKAMSFIGQSSAGKATKGFTQKEQLKV 543
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
++KFR G YN +VAT +GEEGLDI EVDL+IC+DA+ SP+R++QRMGRTGRK GRI
Sbjct: 544 MKKFREGRYNTLVATCVGEEGLDIGEVDLIICYDASKSPIRLVQRMGRTGRKRQGRI 600
Score = 45.1 bits (105), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Query: 1071 NKHGRGRKKPMDNMREYIEEEAEVSSEA-EVSDDEEDDEDNNSYDDSFIDDRMNPTATST 1129
N R K P+ E++E+EAEVS E E S DEE+ D + YDDSFI D +T
Sbjct: 1767 NSKARKSKSPL--AAEFLEDEAEVSDEDDEYSGDEEEGSDLDRYDDSFIGD-------AT 1817
Query: 1130 Q-AESSGVDMMAIY 1142
Q ++ S DM AIY
Sbjct: 1818 QLSQRSADDMKAIY 1831
>gi|156358317|ref|XP_001624467.1| predicted protein [Nematostella vectensis]
gi|156211250|gb|EDO32367.1| predicted protein [Nematostella vectensis]
Length = 642
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/509 (44%), Positives = 319/509 (62%), Gaps = 32/509 (6%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D E+ WIYP N PVRDYQF I + AL+ N +V LPTGLGKT IAAVV+YN++RW+P
Sbjct: 69 FDMESGDIWIYPTNYPVRDYQFNIVQKALYQNIMVTLPTGLGKTFIAAVVMYNYYRWYPQ 128
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GK+VF AP++PLV QQIEAC+ I+GIPQ T +MTG ++PTKR + W+TKRVFF+TPQVL
Sbjct: 129 GKVVFMAPTKPLVAQQIEACYKIMGIPQTDTAEMTGNMAPTKRENLWRTKRVFFLTPQVL 188
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
+ D+ G+C +V LV+DEAH+A GN++YC +RE++S R+LAL+ATPG +
Sbjct: 189 QNDLSRGSCAAADVVLLVVDEAHKALGNHSYCQVVREILSYTTNFRVLALSATPGDDIKA 248
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+Q ++ NL IS +E R+E QD+ Y H R +E I V +G + V + + +V+ R
Sbjct: 249 VQQVLTNLLISHVELRSEDSQDIKPYTHARTVEKIVVPLGDQIVRVKTQYLKVLDTIVGR 308
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L ++ +D +S LL+ R++FR+ P N+ + + G +E F I+LYH LL
Sbjct: 309 LFCNRVVWQKDPLRMSKFMLLSCREQFRKGPAENMNRAQVGSIEGDFAMGISLYHAYELL 368
Query: 394 SSHGIRPAYEMLEEKLKQGSFARFMSKNEDI--------------------RKVKLLMQQ 433
HGI Y ++ L +GS +K E + R+ + Q
Sbjct: 369 HQHGILSFYNFIKGIL-EGSKGMTRAKTELMRHQVTIYYTSALFSQFSSPSRRRSMQFQA 427
Query: 434 SISHGAQSPKLSKMLEVLVDHFKT----------KDPKHSRVIIFSNFRGSVRDIMNALA 483
S PKL K+ E++V+HFK K +RV+IFS +R SV++I L
Sbjct: 428 SDPRFKSHPKLQKLEEIVVEHFKKFAESTSKVKGKPSVDTRVMIFSQYRDSVKEITTILC 487
Query: 484 TIGDLVKATEFIGQ-SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVD 542
LV+ FIGQ S+GK+SKG SQK Q V+ +FR GGYN +V+T +GEEGLDI +VD
Sbjct: 488 RHKPLVRVMSFIGQASTGKSSKGLSQKEQLEVVHRFRMGGYNTLVSTCVGEEGLDIGDVD 547
Query: 543 LVICFDANVSPLRMIQRMGRTGRKHDGRI 571
L++CFDA+ SP+R++QRMGRTGRK DGRI
Sbjct: 548 LIVCFDAHASPIRLVQRMGRTGRKRDGRI 576
>gi|402876056|ref|XP_003901798.1| PREDICTED: Fanconi anemia group M protein [Papio anubis]
Length = 1980
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 252/627 (40%), Positives = 355/627 (56%), Gaps = 61/627 (9%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y + RKIE + V +G+E I +++ + L
Sbjct: 259 ITNLLIGQIELRSEDSPDILAYSYERKIEKLIVPLGEELAAIQKTYIQILESFAHSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGVIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQQSISHGAQS----------- 441
+R Y L + G+ SK NED K+ ++ +H +
Sbjct: 379 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFAHTRSTSADSVSAIQQG 437
Query: 442 ----------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 438 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTSEKKRDETRVMIFSSFRDSVQEIAEMLS 497
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL
Sbjct: 498 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDL 557
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKDDHAIT 603
+ICFD+ SP+R++QRMGRTGRK GRI I E E+ R K+K D ++
Sbjct: 558 IICFDSQKSPIRLVQRMGRTGRKRQGRIVVILS------EGREERVRMRQSKLKKDWFLS 611
Query: 604 TPIFK--------------EKLTAAE---TDLIAKYFHPTSDSTW---RPSLIAFPHFQA 643
FK +++T + + L + PT +S + SL + +Q
Sbjct: 612 EEEFKLWNRLYRLRDSDEIKEITLPQVQFSSLQNEENKPTQESATGIRQLSLSEWRLWQD 671
Query: 644 LPSRVHKVMHSFRTGMLIDMMQHLQGL 670
P H+V HS R I +MQ ++G+
Sbjct: 672 HPLPTHQVDHSDRCRHFIGLMQMIEGM 698
>gi|410962305|ref|XP_003987713.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein
[Felis catus]
Length = 2051
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 230/506 (45%), Positives = 313/506 (61%), Gaps = 32/506 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I +T+LF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 82 AGALWIYPTNCPVRDYQLHIARTSLFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 141
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W++KRV F+TPQV+ D+
Sbjct: 142 FMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGSTQALTRKEIWRSKRVLFLTPQVMVNDL 201
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 202 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTDHFRILALSATPGSDIKAVQQV 261
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E + V +G+E V I +V+ + S L
Sbjct: 262 ITNLRIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELVAIQKAYIQVLEAFASSLIQR 321
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 322 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 381
Query: 398 IRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS------------ 441
+R Y L + K + A+ +S+NED K+ ++ +H +
Sbjct: 382 MRSLYFFLCGIMDGTKGMTRAKNELSRNEDFMKLYNHLECMFAHTRGTSASGSSIQKGDK 441
Query: 442 --------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALATI 485
PKL K+ EV+V+HFK+ K +RV+IFS+FR SV++I L
Sbjct: 442 DKNFVYSHPKLKKLEEVVVEHFKSWNTQNASEKKCGETRVMIFSSFRDSVQEIAEMLLKH 501
Query: 486 GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
+++ F+G +SGK+ KG +QK Q V+++FR+GGYN +V+T +GEEGLDI EVDL+I
Sbjct: 502 QPVIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLII 561
Query: 546 CFDANVSPLRMIQRMGRTGRKHDGRI 571
CFDA SP+R+IQRMGRTGRK GRI
Sbjct: 562 CFDAQKSPIRLIQRMGRTGRKRQGRI 587
>gi|348572365|ref|XP_003471963.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein-like
[Cavia porcellus]
Length = 2029
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 227/500 (45%), Positives = 311/500 (62%), Gaps = 26/500 (5%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++TALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQTQMAEMTGSTQVFTRKEIWCNKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
GTC + CLVIDEAH+A GNYAYC +REL+ RILALTATPGS + +Q +
Sbjct: 199 TRGTCPAADIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALTATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E + V +G+E + I +++ + S L
Sbjct: 259 ISNLLIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELIAIQKMYIQILEAFASPLIHR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P P++ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDISNLTKYQIILARDQFRKNPSPDIVGIQQGIIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS------------ 441
+R Y L + K + A+ + +NED K+ ++ +H +
Sbjct: 379 MRSLYFFLCGIMDGTKGMTRAKNELCRNEDFVKLYHHLECMFAHDTSAVHREDKDKKIFY 438
Query: 442 --PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKA 491
PKL K+ EV+V+HFK+ K +RV+IFS+FR SV++I L +++
Sbjct: 439 SHPKLKKLEEVVVEHFKSWNAQNTAEKKCSETRVMIFSSFRDSVQEIAEMLLKHKPIIRV 498
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
F+G +SGK KG +QK Q V+++FRAGG+N +V+T +GEEGLDI EVDL++CFDA
Sbjct: 499 MTFVGHASGKGMKGFTQKEQLEVVKRFRAGGFNTLVSTCVGEEGLDIGEVDLIVCFDAQK 558
Query: 552 SPLRMIQRMGRTGRKHDGRI 571
SP+R+IQRMGRTGR+ GRI
Sbjct: 559 SPIRLIQRMGRTGRQRQGRI 578
>gi|73963567|ref|XP_537429.2| PREDICTED: Fanconi anemia group M protein [Canis lupus familiaris]
Length = 2047
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/507 (45%), Positives = 311/507 (61%), Gaps = 33/507 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ IT+T+LF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGSLWIYPTNCPVRDYQLQITRTSLFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W++KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGTTQAFTRKEIWRSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL RILAL+ATPGS + IQ +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELFKYTNHFRILALSATPGSDIKAIQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E + V +G+E I +V+ + S L
Sbjct: 259 ITNLRIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELAAIQKAYIQVLEAFASSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NILMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS------------ 441
+R Y L + K + A+ +S+NED K+ + +H +
Sbjct: 379 MRSLYFFLCGIMDGTKGMTRAKNELSRNEDFMKLYNHLACMFAHTCGTSANGFSTIQKGD 438
Query: 442 ---------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALAT 484
PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L
Sbjct: 439 KDKKFFYSHPKLKKLEEVVLEHFKSWNIQNTSEKKCDETRVMIFSSFRDSVQEIAEMLLQ 498
Query: 485 IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
+++ F+G +SGK+ KG +QK Q V+++FR+GGYN +V+T +GEEGLDI EVDL+
Sbjct: 499 HQPVIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLI 558
Query: 545 ICFDANVSPLRMIQRMGRTGRKHDGRI 571
ICFDA SP+R++QRMGRTGRK GRI
Sbjct: 559 ICFDAQKSPIRLVQRMGRTGRKRKGRI 585
>gi|403277961|ref|XP_003930608.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Saimiri
boliviensis boliviensis]
Length = 2047
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 227/505 (44%), Positives = 312/505 (61%), Gaps = 31/505 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLNISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAQMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKFTNHFRILALSATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y H RK+E + V +G+E V I +++ + L
Sbjct: 259 ITNLLIGQIELRSEDSPDILAYSHERKVEKLIVPLGEELVAIQKTYIQILEAFAHSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDISNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS------------ 441
+R Y L + K + ++ +S+NED K+ ++ +H +
Sbjct: 379 MRSLYFFLCGIMDGTKGMTRSKNELSRNEDFMKLYKHLEGMFAHTRSTSANGISAIQQGD 438
Query: 442 -------PKLSKMLEVLVDHFK------TKDPKH--SRVIIFSNFRGSVRDIMNALATIG 486
PKL K+ EV+++HFK T KH +RV+IFS+FR SV++I L+
Sbjct: 439 KKFVYGHPKLKKLEEVVIEHFKSWNAENTSGKKHDETRVMIFSSFRDSVQEIAEMLSQHQ 498
Query: 487 DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL+IC
Sbjct: 499 PTIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIIC 558
Query: 547 FDANVSPLRMIQRMGRTGRKHDGRI 571
FD+ SP+R++QRMGRTGRK GRI
Sbjct: 559 FDSQKSPIRLVQRMGRTGRKRQGRI 583
>gi|187957728|gb|AAI50786.1| Fanconi anemia, complementation group M [Mus musculus]
Length = 2021
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/506 (44%), Positives = 312/506 (61%), Gaps = 30/506 (5%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK 155
A A WIYP N PVRDYQ I+++ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK
Sbjct: 65 AAAGALWIYPTNCPVRDYQLDISRSALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK 124
Query: 156 IVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEK 215
+VF AP++PLV QQ+EAC +++GIPQ +MTG R W ++RV F+TPQV+
Sbjct: 125 VVFMAPTKPLVTQQMEACFHVMGIPQSHMAEMTGSTQAVNRKEIWSSRRVLFLTPQVMVN 184
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
D+ G ++ CLV+DEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q
Sbjct: 185 DLTRGAVPATHVKCLVVDEAHKALGNYAYCQVVRELVKYTTHFRILALSATPGSDIKAVQ 244
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335
+I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 245 QVITNLLIGKIELRSEESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLI 304
Query: 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL
Sbjct: 305 HRNVLMKRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFALCISLYHGYELLQQ 364
Query: 396 HGIRPAYEMLE---EKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS---------- 441
G+R Y L + K + AR +S+NED K+ +Q + + + S
Sbjct: 365 MGMRSLYFFLSGIMDGTKGMTRARNELSRNEDFMKLYTHLQSAFAPASTSDASAFQRGNK 424
Query: 442 --------PKLSKMLEVLVDHFKTKDPK--------HSRVIIFSNFRGSVRDIMNALATI 485
PKL K+ EV+++HFK+ + K SRV+IFS+FR SV +I L
Sbjct: 425 EKKFVYSHPKLKKLEEVILEHFKSWNAKATTEKKCHESRVMIFSSFRDSVEEIAEMLLQH 484
Query: 486 GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
+++ F+G +SGK +KG +QK Q V+ +FR GGYN +V+T +GEEGLDI EVDL+I
Sbjct: 485 RPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGYNTLVSTCVGEEGLDIGEVDLII 544
Query: 546 CFDANVSPLRMIQRMGRTGRKHDGRI 571
CFDA SP+R+IQRMGRTGRK GRI
Sbjct: 545 CFDAQKSPIRLIQRMGRTGRKRQGRI 570
>gi|54112418|ref|NP_849243.2| Fanconi anemia group M protein homolog [Mus musculus]
gi|78099255|sp|Q8BGE5.3|FANCM_MOUSE RecName: Full=Fanconi anemia group M protein homolog; Short=Protein
FACM; AltName: Full=ATP-dependent RNA helicase FANCM
Length = 2021
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/506 (44%), Positives = 312/506 (61%), Gaps = 30/506 (5%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK 155
A A WIYP N PVRDYQ I+++ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK
Sbjct: 65 AAAGALWIYPTNCPVRDYQLDISRSALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK 124
Query: 156 IVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEK 215
+VF AP++PLV QQ+EAC +++GIPQ +MTG R W ++RV F+TPQV+
Sbjct: 125 VVFMAPTKPLVTQQMEACFHVMGIPQSHMAEMTGSTQAVNRKEIWSSRRVLFLTPQVMVN 184
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
D+ G ++ CLV+DEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q
Sbjct: 185 DLTRGAVPATHVKCLVVDEAHKALGNYAYCQVVRELVKYTTHFRILALSATPGSDIKAVQ 244
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335
+I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 245 QVITNLLIGKIELRSEESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLI 304
Query: 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL
Sbjct: 305 HRNVLMKRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFALCISLYHGYELLQQ 364
Query: 396 HGIRPAYEMLE---EKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS---------- 441
G+R Y L + K + AR +S+NED K+ +Q + + + S
Sbjct: 365 MGMRSLYFFLSGIMDGTKGMTRARNELSRNEDFMKLYTHLQSAFAPASTSDASAFQRGNK 424
Query: 442 --------PKLSKMLEVLVDHFKTKDPK--------HSRVIIFSNFRGSVRDIMNALATI 485
PKL K+ EV+++HFK+ + K SRV+IFS+FR SV +I L
Sbjct: 425 EKKFVYSHPKLKKLEEVILEHFKSWNAKATTEKKCHESRVMIFSSFRDSVEEIAEMLLQH 484
Query: 486 GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
+++ F+G +SGK +KG +QK Q V+ +FR GGYN +V+T +GEEGLDI EVDL+I
Sbjct: 485 RPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGYNTLVSTCVGEEGLDIGEVDLII 544
Query: 546 CFDANVSPLRMIQRMGRTGRKHDGRI 571
CFDA SP+R+IQRMGRTGRK GRI
Sbjct: 545 CFDAQKSPIRLIQRMGRTGRKRQGRI 570
>gi|148704700|gb|EDL36647.1| mCG118968 [Mus musculus]
Length = 1370
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/506 (44%), Positives = 312/506 (61%), Gaps = 30/506 (5%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK 155
A A WIYP N PVRDYQ I+++ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK
Sbjct: 33 AAAGALWIYPTNCPVRDYQLDISRSALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK 92
Query: 156 IVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEK 215
+VF AP++PLV QQ+EAC +++GIPQ +MTG R W ++RV F+TPQV+
Sbjct: 93 VVFMAPTKPLVTQQMEACFHVMGIPQSHMAEMTGSTQAVNRKEIWSSRRVLFLTPQVMVN 152
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
D+ G ++ CLV+DEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q
Sbjct: 153 DLTRGAVPATHVKCLVVDEAHKALGNYAYCQVVRELVKYTTHFRILALSATPGSDIKAVQ 212
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335
+I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 213 QVITNLLIGKIELRSEESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLI 272
Query: 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL
Sbjct: 273 HRNVLMKRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFALCISLYHGYELLQQ 332
Query: 396 HGIRPAYEMLE---EKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS---------- 441
G+R Y L + K + AR +S+NED K+ +Q + + + S
Sbjct: 333 MGMRSLYFFLSGIMDGTKGMTRARNELSRNEDFMKLYTHLQSAFAPASTSDASAFQRGNK 392
Query: 442 --------PKLSKMLEVLVDHFKTKDPK--------HSRVIIFSNFRGSVRDIMNALATI 485
PKL K+ EV+++HFK+ + K SRV+IFS+FR SV +I L
Sbjct: 393 EKKFVYSHPKLKKLEEVILEHFKSWNAKATTEKKCHESRVMIFSSFRDSVEEIAEMLLQH 452
Query: 486 GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
+++ F+G +SGK +KG +QK Q V+ +FR GGYN +V+T +GEEGLDI EVDL+I
Sbjct: 453 RPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGYNTLVSTCVGEEGLDIGEVDLII 512
Query: 546 CFDANVSPLRMIQRMGRTGRKHDGRI 571
CFDA SP+R+IQRMGRTGRK GRI
Sbjct: 513 CFDAQKSPIRLIQRMGRTGRKRQGRI 538
>gi|358418015|ref|XP_003583812.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein [Bos
taurus]
Length = 2037
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/507 (45%), Positives = 310/507 (61%), Gaps = 33/507 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I +TALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 85 AGALWIYPTNCPVRDYQLHIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 144
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 145 FMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGSTQAFTRKEIWSSKRVLFLTPQVMVNDL 204
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ R+LAL+ATPGS + +Q +
Sbjct: 205 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRVLALSATPGSDIKAVQQV 264
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 265 ITNLLIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELEAIQKAYIQILEAFASSLIQR 324
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L +D L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 325 NVLMRKDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 384
Query: 398 IRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS------------ 441
+R Y L + K + A+ +S+N D K+ + SH +
Sbjct: 385 MRSLYFFLCGIMDGTKGMTRAKNELSRNADFMKLYDHLDSMFSHTRSTSTSGVSAIQKGG 444
Query: 442 ---------PKLSKMLEVLVDHF------KTKDPK--HSRVIIFSNFRGSVRDIMNALAT 484
PKL K+ EV+V+HF KT D K +RV+IFS+FR SV++I L
Sbjct: 445 KDKKFCYSHPKLKKLEEVVVEHFKSWNARKTSDKKCDETRVMIFSSFRDSVQEIAEMLLP 504
Query: 485 IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
+++ F+G +SGK+ KG +QK Q V+++FR+GGYN +V+T +GEEGLDI EVDL+
Sbjct: 505 HQPIIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLI 564
Query: 545 ICFDANVSPLRMIQRMGRTGRKHDGRI 571
ICFDA SP+R+IQRMGRTGRK GRI
Sbjct: 565 ICFDAQKSPIRLIQRMGRTGRKRQGRI 591
>gi|375298275|ref|NP_001098446.2| Fanconi anemia, complementation group M [Bos taurus]
Length = 2037
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/507 (45%), Positives = 310/507 (61%), Gaps = 33/507 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I +TALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 85 AGALWIYPTNCPVRDYQLHIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 144
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 145 FMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGSTQAFTRKEIWSSKRVLFLTPQVMVNDL 204
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ R+LAL+ATPGS + +Q +
Sbjct: 205 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRVLALSATPGSDIKAVQQV 264
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 265 ITNLLIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELEAIQKAYIQILEAFASSLIQR 324
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L +D L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 325 NVLMRKDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 384
Query: 398 IRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS------------ 441
+R Y L + K + A+ +S+N D K+ + SH +
Sbjct: 385 MRSLYFFLCGIMDGTKGMTRAKNELSRNADFMKLYDHLDSMFSHTRSTSTSGVSAIQKGG 444
Query: 442 ---------PKLSKMLEVLVDHF------KTKDPK--HSRVIIFSNFRGSVRDIMNALAT 484
PKL K+ EV+V+HF KT D K +RV+IFS+FR SV++I L
Sbjct: 445 KDKKFCYSHPKLKKLEEVVVEHFKSWNARKTSDKKCDETRVMIFSSFRDSVQEIAEMLLP 504
Query: 485 IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
+++ F+G +SGK+ KG +QK Q V+++FR+GGYN +V+T +GEEGLDI EVDL+
Sbjct: 505 HQPIIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLI 564
Query: 545 ICFDANVSPLRMIQRMGRTGRKHDGRI 571
ICFDA SP+R+IQRMGRTGRK GRI
Sbjct: 565 ICFDAQKSPIRLIQRMGRTGRKRQGRI 591
>gi|74197309|dbj|BAC34178.2| unnamed protein product [Mus musculus]
gi|74217148|dbj|BAC39257.2| unnamed protein product [Mus musculus]
Length = 1393
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/506 (44%), Positives = 312/506 (61%), Gaps = 30/506 (5%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK 155
A A WIYP N PVRDYQ I+++ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK
Sbjct: 65 AAAGALWIYPTNCPVRDYQLDISRSALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK 124
Query: 156 IVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEK 215
+VF AP++PLV QQ+EAC +++GIPQ +MTG R W ++RV F+TPQV+
Sbjct: 125 VVFMAPTKPLVTQQMEACFHVMGIPQSHMAEMTGSTQAVNRKEIWSSRRVLFLTPQVMVN 184
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
D+ G ++ CLV+DEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q
Sbjct: 185 DLTRGAVPATHVKCLVVDEAHKALGNYAYCQVVRELVKYTTHFRILALSATPGSDIKAVQ 244
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335
+I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 245 QVITNLLIGKIELRSEESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLI 304
Query: 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL
Sbjct: 305 HRNVLMKRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFALCISLYHGYELLQQ 364
Query: 396 HGIRPAYEMLE---EKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS---------- 441
G+R Y L + K + AR +S+NED K+ +Q + + + S
Sbjct: 365 MGMRSLYFFLSGIMDGTKGMTRARNELSRNEDFMKLYTHLQSAFAPASTSDASAFQRGNK 424
Query: 442 --------PKLSKMLEVLVDHFKTKDPK--------HSRVIIFSNFRGSVRDIMNALATI 485
PKL K+ EV+++HFK+ + K SRV+IFS+FR SV +I L
Sbjct: 425 EKKFVYSHPKLKKLEEVILEHFKSWNAKATTEKKCHESRVMIFSSFRDSVEEIAEMLLQH 484
Query: 486 GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
+++ F+G +SGK +KG +QK Q V+ +FR GGYN +V+T +GEEGLDI EVDL+I
Sbjct: 485 RPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGYNTLVSTCVGEEGLDIGEVDLII 544
Query: 546 CFDANVSPLRMIQRMGRTGRKHDGRI 571
CFDA SP+R+IQRMGRTGRK GRI
Sbjct: 545 CFDAQKSPIRLIQRMGRTGRKRQGRI 570
>gi|332229232|ref|XP_003263795.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Nomascus
leucogenys]
Length = 2050
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/512 (44%), Positives = 310/512 (60%), Gaps = 35/512 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLQISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y H RK+E + V +G+E I +++ + L
Sbjct: 259 ITNLLIGQIELRSEDSPDILAYSHERKVEKLIVPLGEELAAIQKTYIQILESFAHSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQQSISHGAQS----------- 441
+R Y L + G+ SK NED K+ ++ +H +
Sbjct: 379 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFAHTRSTSANGISAIQQG 437
Query: 442 ----------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 438 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTSEKKRDETRVMIFSSFRDSVQEIAEMLS 497
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL
Sbjct: 498 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDL 557
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
+ICFD+ SP+R++QRMGRTGRK GRI I
Sbjct: 558 IICFDSQKSPIRLVQRMGRTGRKRQGRIVVIL 589
>gi|297695020|ref|XP_002824758.1| PREDICTED: Fanconi anemia group M protein [Pongo abelii]
Length = 1967
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 228/512 (44%), Positives = 308/512 (60%), Gaps = 35/512 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y H RK+E + V +G+E I +++ + L
Sbjct: 259 ITNLLIGQIELRSEDSPDILAYSHERKVEKLIVPLGEELAAIQKTYIQILESFAHSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIMGIQQGIIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLL-----------------------MQQS 434
+R Y L + G+ SKNE R + +QQ
Sbjct: 379 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFAHTRSTSANGISAIQQG 437
Query: 435 ISHGA---QSPKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
H PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 438 DKHKKFVYSHPKLKKLEEVVIEHFKSWNAENTSEKKRDETRVMIFSSFRDSVQEIAEMLS 497
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL
Sbjct: 498 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDL 557
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
+ICFD+ SP+R+IQRMGRTGRK GRI I
Sbjct: 558 IICFDSQKSPIRLIQRMGRTGRKRQGRIVVIL 589
>gi|74959747|ref|NP_065988.1| Fanconi anemia group M protein [Homo sapiens]
gi|78099254|sp|Q8IYD8.2|FANCM_HUMAN RecName: Full=Fanconi anemia group M protein; Short=Protein FACM;
AltName: Full=ATP-dependent RNA helicase FANCM; AltName:
Full=Fanconi anemia-associated polypeptide of 250 kDa;
Short=FAAP250; AltName: Full=Protein Hef ortholog
gi|71912519|gb|AAZ53290.1| Fanconi anemia complementation group M [Homo sapiens]
gi|119586185|gb|EAW65781.1| Fanconi anemia, complementation group M, isoform CRA_a [Homo
sapiens]
gi|162319388|gb|AAI56491.1| Fanconi anemia, complementation group M [synthetic construct]
Length = 2048
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/508 (44%), Positives = 312/508 (61%), Gaps = 35/508 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG + R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y H RK+E + V +G+E I +++ + L
Sbjct: 259 ITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQ--------------QSISHG 438
+R Y L + G+ SK NED K+ ++ +I G
Sbjct: 379 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFARTRSTSANGISAIQQG 437
Query: 439 AQS-------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
++ PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 438 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLS 497
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL
Sbjct: 498 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDL 557
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ICFD+ SP+R++QRMGRTGRK GRI
Sbjct: 558 IICFDSQKSPIRLVQRMGRTGRKRQGRI 585
>gi|430814617|emb|CCJ28178.1| unnamed protein product [Pneumocystis jirovecii]
gi|430814620|emb|CCJ28181.1| unnamed protein product [Pneumocystis jirovecii]
Length = 882
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 241/577 (41%), Positives = 350/577 (60%), Gaps = 21/577 (3%)
Query: 10 INGDDDDEFDWEAAVREIDTACQ------SSKPSTSNSTNFNLCS-KANKKPSTCKQSTL 62
+N + EF E +R I A + + S TN + + K ++K S Q+TL
Sbjct: 1 MNETSEYEFSDEEGLRSILEATEMILEQLEIETKQSKETNKQIGNEKGHEKSSILVQTTL 60
Query: 63 DKFFGNLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTAL 122
FG++ P+ Q + +E H +ID KTWIYP NV RDYQF I + AL
Sbjct: 61 ---FGDIIPEKQNNLMI---KTIEEIPTHHEIDRALIKTWIYPTNVSERDYQFNIVQKAL 114
Query: 123 FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182
+ N LV+LPTGLGKT IAAV++ N++RWFP KI+F AP++PLV QQI+AC+NI GIP +
Sbjct: 115 YQNVLVSLPTGLGKTFIAAVLMLNYYRWFPKSKIIFVAPTKPLVSQQIQACYNICGIPLK 174
Query: 183 WTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNY 242
TI+++G P R++ W KRVFF+TPQ L+ D++SG C K +VCLVIDEAHRATGNY
Sbjct: 175 DTIELSGNTKPILRSAAWNEKRVFFMTPQALQNDLESGICDKKSIVCLVIDEAHRATGNY 234
Query: 243 AYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHN 302
AYC +R + S RILALTATPG+ ++Q ++++L I+ +E R E D+ Y+HN
Sbjct: 235 AYCNVVRMIRSENKSFRILALTATPGTDIDSVQEVVNSLCIAQIELRTEDSIDIRGYIHN 294
Query: 303 RKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQ 362
R +E I + + QE + + + ++I+P+ +L+ +D L+ L+ ++ F +
Sbjct: 295 RTVETILIPLSQELIILRDLYGDIIKPFLQKLNTANACHIQDPSDLTTFALMQAQKSFMK 354
Query: 363 APPP-NLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQ---GSFARFM 418
P N P K GE F L +L + LL HGI P Y ++E G + F+
Sbjct: 355 TPSMINAPSNKKGEFYGLFSFLSSLAYPMSLLICHGINPFYAKIKELTDNKSLGKYKSFL 414
Query: 419 SKNEDIRKVKLLMQQSISHGA--QSPKLSKMLEVLVDHFKTKDPKH--SRVIIFSNFRGS 474
+E I+++ L++ S + PKL K+ ++++HF D K+ +R +IF +R S
Sbjct: 415 RNDERIKQIVSLIEDMKSKPSFIGHPKLDKLRSLILNHFANTDTKNEETRAMIFVEYRSS 474
Query: 475 VRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEE 534
DI+ +L L++A FIGQSS K+S G SQK Q +++EKF++G +N +VATSIGEE
Sbjct: 475 AEDIIKSLKEHYPLIRAQLFIGQSSNKSSLGMSQKEQISIVEKFKSGSFNTLVATSIGEE 534
Query: 535 GLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
GLDI EVDL+IC+D+ S R++QRMGRTGRK G I
Sbjct: 535 GLDIGEVDLIICYDSTSSSTRLLQRMGRTGRKRQGHI 571
>gi|431893730|gb|ELK03551.1| Fanconi anemia group M protein [Pteropus alecto]
Length = 2039
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/505 (44%), Positives = 308/505 (60%), Gaps = 31/505 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I + ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 83 AGALWIYPTNCPVRDYQLHIARAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 142
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W KRV F+TPQV+ D+
Sbjct: 143 FMAPTKPLVTQQIEACYRVMGIPQFHMAEMTGSTHAVTRKEIWSNKRVLFLTPQVMVNDL 202
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 203 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 262
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 263 ITNLLIGQIELRSEDSPDILPYSHERQVEKLVVPLGEELTAIQKAYVQILEAFASSLIQR 322
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
LL RD L+ ++ +RD+FR+ P PN+ ++ G +E F I+LYH LL G
Sbjct: 323 NLLMRRDIPNLTKYQIILARDQFRKNPSPNIVGVQQGIIEGEFAVCISLYHGYELLQQMG 382
Query: 398 IRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS------------ 441
+R Y L + K + A+ + +NED K+ ++ +H +
Sbjct: 383 MRSLYFFLCGIMDGTKGMTRAKNELRRNEDFMKLYNHLECMFAHTRSTSASSISTIQKGD 442
Query: 442 -------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALATIG 486
PKL K+ E++V+HFK+ K +RV+IFS+FR SV++I L
Sbjct: 443 KDFFYSHPKLKKLEEIVVEHFKSWNAQNTSEKKCDKTRVMIFSSFRDSVQEIAEMLLQHQ 502
Query: 487 DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
+++ F+G +SGK+ KG +QK Q V+++FR+GGYN +V+T +GEEGLDI EVDL+IC
Sbjct: 503 PIIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIIC 562
Query: 547 FDANVSPLRMIQRMGRTGRKHDGRI 571
FDA SP+R+IQRMGRTGRK GRI
Sbjct: 563 FDAQKSPIRLIQRMGRTGRKRQGRI 587
>gi|350579040|ref|XP_003480507.1| PREDICTED: Fanconi anemia group M protein [Sus scrofa]
Length = 2053
Score = 454 bits (1169), Expect = e-124, Method: Compositional matrix adjust.
Identities = 229/511 (44%), Positives = 311/511 (60%), Gaps = 33/511 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I +TALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 88 AGALWIYPTNCPVRDYQLNIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 147
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 148 FMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGSTQVFTRKEIWDSKRVLFLTPQVMVNDL 207
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAHRA GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 208 SRGACPAAEIKCLVIDEAHRALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 267
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E + V + +E I +++ + L
Sbjct: 268 ITNLLIEQIELRSEDAPDILPYSHERRVEKLVVPLSEELAAIQKAYIQILEAFAHSLIQR 327
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ ++ G +E F I+LYH LL G
Sbjct: 328 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGMQQGIIEGEFAICISLYHGYELLQQMG 387
Query: 398 IRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS------------ 441
+R Y L + K + A+ +S+NED K+ ++ +H +
Sbjct: 388 MRSLYFFLCGIMDGTKGMTRAKNELSRNEDFMKLYNHLEYMFAHTRSTSTSGISAIQKGD 447
Query: 442 ---------PKLSKMLEVLVDHFK------TKDPK--HSRVIIFSNFRGSVRDIMNALAT 484
PKL K+ EV+V+HFK T D K +RV+IFS+FR SV++I L
Sbjct: 448 KDKKFCYSHPKLKKLEEVVVEHFKSWNAQNTSDKKCDKTRVMIFSSFRDSVQEIAEMLLR 507
Query: 485 IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
+++ F+G +SGK+ KG +QK Q V+++FR+GGYN +V+T +GEEGLDI EVDL+
Sbjct: 508 HQPIIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLI 567
Query: 545 ICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
ICFDA SP+R++QRMGRTGRK GRI I
Sbjct: 568 ICFDAQKSPIRLVQRMGRTGRKRQGRIVVIL 598
>gi|119586186|gb|EAW65782.1| Fanconi anemia, complementation group M, isoform CRA_b [Homo
sapiens]
Length = 2083
Score = 454 bits (1169), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/508 (44%), Positives = 312/508 (61%), Gaps = 35/508 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG + R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y H RK+E + V +G+E I +++ + L
Sbjct: 259 ITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQ--------------QSISHG 438
+R Y L + G+ SK NED K+ ++ +I G
Sbjct: 379 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFARTRSTSANGISAIQQG 437
Query: 439 AQS-------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
++ PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 438 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLS 497
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL
Sbjct: 498 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDL 557
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ICFD+ SP+R++QRMGRTGRK GRI
Sbjct: 558 IICFDSQKSPIRLVQRMGRTGRKRQGRI 585
>gi|344273425|ref|XP_003408522.1| PREDICTED: Fanconi anemia group M protein [Loxodonta africana]
Length = 2066
Score = 454 bits (1169), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/507 (44%), Positives = 304/507 (59%), Gaps = 33/507 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I +TALF NTLV LPTGLGKT IA+VV+YNF+RWFP GK+V
Sbjct: 82 AGAVWIYPTNCPVRDYQLHIARTALFCNTLVCLPTGLGKTFIASVVMYNFYRWFPSGKVV 141
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W KRV F+TPQV+ D+
Sbjct: 142 FMAPTKPLVAQQIEACYRVMGIPQSHMAEMTGSTQAFTRKDIWHNKRVLFLTPQVMVNDL 201
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLV+DEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 202 SRGACPAAEIKCLVVDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 261
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 262 ITNLLIGKIELRSEDSPDILPYSHERRVEKVVVPLGEELAAIQKAYIQILEAFASSLIQR 321
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD +L+ L+ +RD+FR+ P PN+ ++ G +E F I+LYH LL G
Sbjct: 322 NVLMRRDIPSLTKYQLILARDQFRKNPSPNIVGLQQGIIEGEFAVCISLYHGYELLQQMG 381
Query: 398 IRPAYEML----EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQS------------ 441
+R Y L + + +NED K+ ++ +H +
Sbjct: 382 MRSLYLFLCGIMDGTKGMTRTKNELGRNEDFMKLFSHLEGMFAHTRNTSESGVSAIRKGD 441
Query: 442 ---------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALAT 484
PKL K+ EV+V HFK+ K +RV+IFS+FR SV++I L
Sbjct: 442 KDKKFFYSHPKLKKLEEVVVQHFKSWNDQNTSKKKCDETRVMIFSSFRDSVQEIAEMLFQ 501
Query: 485 IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
++K F+G SSGK++KG + K Q V+++FR GGYN +V+T +GEEGLDI EVDL+
Sbjct: 502 HQPVIKVMTFVGHSSGKSTKGFTHKEQVEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLI 561
Query: 545 ICFDANVSPLRMIQRMGRTGRKHDGRI 571
ICFDA SP+R++QRMGRTGRK GRI
Sbjct: 562 ICFDAQKSPIRLVQRMGRTGRKRQGRI 588
>gi|426376787|ref|XP_004055167.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Gorilla
gorilla gorilla]
Length = 2048
Score = 454 bits (1168), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/508 (44%), Positives = 311/508 (61%), Gaps = 35/508 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y H RK+E + V +G+E I +++ + L
Sbjct: 259 ITNLLIGQIELRSEDSPDILAYSHERKVEKLIVPLGEELAAIQKTYIQILESFAHSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQ--------------QSISHG 438
+R Y L + G+ SK NED K+ ++ +I G
Sbjct: 379 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNYLECMFARTRSTSANGISAIQQG 437
Query: 439 AQS-------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
++ PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 438 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLS 497
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL
Sbjct: 498 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDL 557
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ICFD+ SP+R++QRMGRTGRK GRI
Sbjct: 558 IICFDSQKSPIRLVQRMGRTGRKRQGRI 585
>gi|296214902|ref|XP_002753903.1| PREDICTED: Fanconi anemia group M protein [Callithrix jacchus]
Length = 2043
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/501 (44%), Positives = 311/501 (62%), Gaps = 31/501 (6%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+VF AP
Sbjct: 83 WIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAP 142
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+ G
Sbjct: 143 TKPLVTQQIEACYQVMGIPQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDLSRGA 202
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +I NL
Sbjct: 203 CPAAEIKCLVIDEAHKALGNYAYCQVVRELVKFTNHFRILALSATPGSDIKAVQQVITNL 262
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
I +E R+E D+ +Y H RK+E + V +G+E I +++ + L +L
Sbjct: 263 LIGQIELRSEDSPDILAYSHERKVEKLIVPLGEELAAIQKTYIQILEAFAHSLIQRNVLM 322
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPA 401
+D L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G+R
Sbjct: 323 RKDISNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMGMRSL 382
Query: 402 YEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS---------------- 441
Y L + K + ++ +S+NED K+ ++ +H +
Sbjct: 383 YFFLCGIMDGTKGMTRSKNELSRNEDFMKLYKHLECMFAHTRSTSANGISAIQQGDKKFV 442
Query: 442 ---PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK 490
PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+ +++
Sbjct: 443 YGHPKLKKLEEVVIEHFKSWNAENTSGKKRDKTRVMIFSSFRDSVQEIAEMLSQHQPIIR 502
Query: 491 ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL+ICFD+
Sbjct: 503 VMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQ 562
Query: 551 VSPLRMIQRMGRTGRKHDGRI 571
SP+R++QRMGRTGRK GRI
Sbjct: 563 KSPIRLVQRMGRTGRKRQGRI 583
>gi|114652855|ref|XP_509928.2| PREDICTED: Fanconi anemia group M protein isoform 2 [Pan
troglodytes]
Length = 2048
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 228/512 (44%), Positives = 312/512 (60%), Gaps = 35/512 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTL LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLACLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILALTATPGS + +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALTATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E+ D+ +Y H RK+E + V +G+E I +V+ + L
Sbjct: 259 ITNLLIGQIELRSENSPDILAYSHERKVEKLIVPLGEELAAIQKTYIQVLESFAHSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQ--------------QSISHG 438
+R Y L + G+ SK NED K+ ++ +I G
Sbjct: 379 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECVFARTRSTSANGISAIQQG 437
Query: 439 AQS-------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
++ PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 438 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLS 497
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL
Sbjct: 498 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDL 557
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
+ICFD+ SP+R++QRMGRTGRK GRI I
Sbjct: 558 IICFDSQKSPIRLVQRMGRTGRKRQGRIVVIL 589
>gi|397523571|ref|XP_003831801.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Pan paniscus]
Length = 2048
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/508 (44%), Positives = 311/508 (61%), Gaps = 35/508 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y H RK+E + V +G+E I +V+ + L
Sbjct: 259 ITNLLIGQIELRSEDSPDILAYSHERKVEKLIVPLGEELAAIQKTYIQVLESFAHSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQ--------------QSISHG 438
+R Y L + G+ SK NED K+ ++ +I G
Sbjct: 379 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFARTRSTSANGISAIQQG 437
Query: 439 AQS-------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
++ PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 438 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLS 497
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL
Sbjct: 498 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDL 557
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ICFD+ SP+R++QRMGRTGRK GRI
Sbjct: 558 IICFDSQKSPIRLVQRMGRTGRKRQGRI 585
>gi|395838642|ref|XP_003792221.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Otolemur
garnettii]
Length = 2045
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/507 (44%), Positives = 313/507 (61%), Gaps = 34/507 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++TALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLRISRTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQALTRKEIWCNKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILALTATPGS + +Q +
Sbjct: 199 SRGVCPAVEIKCLVIDEAHKALGNYAYCQVVRELLKYTNHFRILALTATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E + V +G+E I +V+ + S L
Sbjct: 259 ITNLLIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELAAIQKTYVQVLEAFASSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L+ RD L+ ++ +RD+FR+ P PN+ + G +E F I+LYH LL G
Sbjct: 319 NVLR-RDIPNLTKYQIILARDQFRKNPSPNIVGKQQGVIEGEFAICISLYHGYELLQQMG 377
Query: 398 IRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGA-------------- 439
+R Y L + K + ++ +S+NED ++ ++ +H +
Sbjct: 378 MRSLYYFLCGIMDGTKGMTRSKNELSRNEDFMELYNQLEGMFAHTSSPSAGGIAALQKGN 437
Query: 440 -------QSPKLSKMLEVLVDHFKTKDPKH--------SRVIIFSNFRGSVRDIMNALAT 484
PKL K+ EV+V+HFK+ + K+ +RV+IFS+FR SV++I L
Sbjct: 438 TDKKFFYSHPKLKKLEEVVVEHFKSWNAKNTSEKKCDETRVMIFSSFRDSVQEIAQMLLQ 497
Query: 485 IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL+
Sbjct: 498 HQPVIRVMTFVGHASGKSTKGFTQKEQVEVVKRFRDGGYNTLVSTCVGEEGLDIGEVDLI 557
Query: 545 ICFDANVSPLRMIQRMGRTGRKHDGRI 571
ICFDA SP+R++QRMGRTGRK GRI
Sbjct: 558 ICFDAQKSPIRLVQRMGRTGRKRQGRI 584
>gi|410339047|gb|JAA38470.1| Fanconi anemia, complementation group M [Pan troglodytes]
Length = 2048
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 228/512 (44%), Positives = 311/512 (60%), Gaps = 35/512 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTL LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLACLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILALTATPGS + +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALTATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y H RK+E + V +G+E I +V+ + L
Sbjct: 259 ITNLLIGQIELRSEDSPDILAYSHERKVEKLIVPLGEELAAIQKTYIQVLESFAHSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQ--------------QSISHG 438
+R Y L + G+ SK NED K+ ++ +I G
Sbjct: 379 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECVFARTRSTSANGISAIQQG 437
Query: 439 AQS-------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
++ PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 438 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLS 497
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL
Sbjct: 498 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDL 557
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
+ICFD+ SP+R++QRMGRTGRK GRI I
Sbjct: 558 IICFDSQKSPIRLVQRMGRTGRKRQGRIVVIL 589
>gi|440803280|gb|ELR24188.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 2476
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 221/487 (45%), Positives = 313/487 (64%), Gaps = 14/487 (2%)
Query: 93 QIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP 152
++D +AA +WIYP N P RDYQ++IT+ ALF NTLV+LPTGLGKT IAAVV+YNF+RWFP
Sbjct: 168 RLDLDAADSWIYPSNYPRRDYQYSITRKALFRNTLVSLPTGLGKTFIAAVVMYNFYRWFP 227
Query: 153 DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQV 212
+GK+VF AP++PLV QQI AC+ I+G+P++ T+ MTGQISP KR W++KRVF+VTPQ+
Sbjct: 228 EGKVVFMAPTKPLVAQQITACYQIMGLPEDDTVTMTGQISPEKRREAWRSKRVFYVTPQI 287
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQ 272
L DI C K +VCLV+DEAHRA GNYAYCT ++ + S RILALT +
Sbjct: 288 LTNDISRQACDAKSIVCLVVDEAHRALGNYAYCTVVKAIASATRHFRILALT-----NME 342
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332
+Q +I NL IS LE R D DV +Y+H+ K+E++ + + E + E+++
Sbjct: 343 QVQQVIHNLLISNLEVRTSEDIDVRAYIHSTKLEMVRLSLTPELNAARSLFIELLKIPLD 402
Query: 333 RLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392
+L + + + S LL+++ KF P P +P +G+V + F ITLYH L
Sbjct: 403 KLHNMRAFWTNEPEKASRFLLLDAKRKFEGHPSPAIPPNAYGQVHSQFALAITLYHAWGL 462
Query: 393 LSSHGIRPAYEM---LEEKLKQGSFARFMSKNE-----DIRKVKLLMQQ-SISHGAQSPK 443
L+++G R L E+++ SK + L++++ + + G PK
Sbjct: 463 LNTYGFRATKNYLSDLREEVQANKEGTAKSKKALVNMPQFHNLMLMLEEFADNAGFNHPK 522
Query: 444 LSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKAS 503
L K+ E+++ HF+ ++RV+IF+ FR +V +I LA +K+ F+GQ G++S
Sbjct: 523 LQKVEELVLQHFQRSPGGNTRVMIFAQFRDTVEEICELLAPHAPHIKSMPFVGQGVGRSS 582
Query: 504 KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
G +QK Q V+E+F+ GGYN +V+T IGEEGLDI EVDL+ICFDA SP RM+QRMGRT
Sbjct: 583 AGFTQKEQSRVIEEFKKGGYNTLVSTCIGEEGLDIGEVDLIICFDAQASPTRMVQRMGRT 642
Query: 564 GRKHDGR 570
GRK DGR
Sbjct: 643 GRKRDGR 649
>gi|440908633|gb|ELR58630.1| Fanconi anemia group M protein, partial [Bos grunniens mutus]
Length = 2036
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 228/507 (44%), Positives = 309/507 (60%), Gaps = 33/507 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I +TALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 85 AGALWIYPTNCPVRDYQLHIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 144
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GI Q +MTG R W +KRV F+TPQV+ D+
Sbjct: 145 FMAPTKPLVTQQIEACYRVMGISQSHMAEMTGSTQAFTRKEIWSSKRVLFLTPQVMVNDL 204
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ R+LAL+ATPGS + +Q +
Sbjct: 205 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRVLALSATPGSDIKAVQQV 264
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 265 ITNLLIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELEAIQKAYIQILEAFASSLIQR 324
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L +D L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 325 NVLMRKDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 384
Query: 398 IRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS------------ 441
+R Y L + K + A+ +S+N D K+ + SH +
Sbjct: 385 MRSLYFFLCGIMDGTKGMTRAKNELSRNADFMKLYDHLDSMFSHTRSTSTSGVSAIQKGG 444
Query: 442 ---------PKLSKMLEVLVDHF------KTKDPK--HSRVIIFSNFRGSVRDIMNALAT 484
PKL K+ EV+V+HF KT D K +RV+IFS+FR SV++I L
Sbjct: 445 KDKKFCYSHPKLKKLEEVVVEHFKSWNARKTSDKKCDETRVMIFSSFRDSVQEIAEMLLP 504
Query: 485 IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
+++ F+G +SGK+ KG +QK Q V+++FR+GGYN +V+T +GEEGLDI EVDL+
Sbjct: 505 HQPIIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLI 564
Query: 545 ICFDANVSPLRMIQRMGRTGRKHDGRI 571
ICFDA SP+R+IQRMGRTGRK GRI
Sbjct: 565 ICFDAQKSPIRLIQRMGRTGRKRQGRI 591
>gi|26343661|dbj|BAC35487.1| unnamed protein product [Mus musculus]
Length = 651
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/506 (44%), Positives = 312/506 (61%), Gaps = 30/506 (5%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK 155
A A WIYP N PVRDYQ I+++ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK
Sbjct: 65 AAAGALWIYPTNCPVRDYQLDISRSALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK 124
Query: 156 IVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEK 215
+VF AP++PLV QQ+EAC +++GIPQ +MTG R W ++RV F+TPQV+
Sbjct: 125 VVFMAPTKPLVTQQMEACFHVMGIPQSHMAEMTGSTQAVNRKEIWSSRRVLFLTPQVMVN 184
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
D+ G ++ CLV+DEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q
Sbjct: 185 DLTRGAVPATHVKCLVVDEAHKALGNYAYCQVVRELVKYTTHFRILALSATPGSDIKAVQ 244
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335
+I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 245 QVITNLLIGKIELRSEESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLI 304
Query: 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL
Sbjct: 305 HRNVLMKRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFALCISLYHGYELLQQ 364
Query: 396 HGIRPAYEMLE---EKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS---------- 441
G+R Y L + K + AR +S+NED K+ +Q + + + S
Sbjct: 365 MGMRSLYFFLSGIMDGTKGMTRARNELSRNEDFMKLYTHLQSAFAPASTSDASAFQRGNK 424
Query: 442 --------PKLSKMLEVLVDHFKTKDPK--------HSRVIIFSNFRGSVRDIMNALATI 485
PKL K+ EV+++HFK+ + K SRV+IFS+FR SV +I L
Sbjct: 425 EKKFVYSHPKLKKLEEVILEHFKSWNAKATTEKKCHESRVMIFSSFRDSVEEIAEMLLQH 484
Query: 486 GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
+++ F+G +SGK +KG +QK Q V+ +FR GGYN +V+T +GEEGLDI EVDL+I
Sbjct: 485 RPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGYNTLVSTCVGEEGLDIGEVDLII 544
Query: 546 CFDANVSPLRMIQRMGRTGRKHDGRI 571
CFDA SP+R+IQRMGRTGRK GRI
Sbjct: 545 CFDAQKSPIRLIQRMGRTGRKRQGRI 570
>gi|340373955|ref|XP_003385505.1| PREDICTED: Fanconi anemia group M protein [Amphimedon
queenslandica]
Length = 1211
Score = 447 bits (1151), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/507 (43%), Positives = 321/507 (63%), Gaps = 32/507 (6%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D EA +++IYP N P+RDYQF I LF NTLV+LPTGLGKT IAAVV+YNF+RW+P
Sbjct: 68 FDYEAGQSYIYPTNYPIRDYQFNIVNKCLFKNTLVSLPTGLGKTFIAAVVMYNFYRWYPC 127
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
K++F AP++PLV QQ+EAC+NI+GIPQE TI+MTG ++P R W TKRVF++TPQVL
Sbjct: 128 KKVIFLAPTKPLVSQQVEACYNIMGIPQEDTIEMTGSVAPKDRNHHWNTKRVFYLTPQVL 187
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
+ D+ TC + + C+V DEAH+A GN++YC I++L+S +R+LAL+ATPGS +
Sbjct: 188 QNDLNQETCNAEDICCIVFDEAHKALGNHSYCQVIKKLISANATVRVLALSATPGSDLKA 247
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+Q +IDNL I+ +E R E D+ Y H RK+E I V + +E +++ +++ + SR
Sbjct: 248 VQQVIDNLQIAHIELRCEDSLDIQQYNHGRKVEKIVVPLDEEILQVRESFKKMLVNFLSR 307
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L+ L+ + D L +L +R+ FR+ P + +E F I+L+H LL
Sbjct: 308 LARQNLIYSTDVDRLGKFQMLQARESFRKLCPSG---AQASAIEGIFCLCISLFHAYELL 364
Query: 394 SSHGIRPAYEMLEEKLKQG-SFARF-MSKNEDIRKVKLLMQQSISHGAQS---------- 441
HG+R Y L+E + +G S A+ +S + D +K+ + ++ +
Sbjct: 365 LQHGMRSFYVFLKESVSEGYSRAKMELSYSHDFKKMMSFLDSKMTEAVNTSLQLNSSMYC 424
Query: 442 -------------PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL 488
PKL ++ +V++ HF++ ++V+IFS +R SVR+I + L+ +
Sbjct: 425 PSVKPTADFFYSHPKLKELEKVVLSHFESSSGSPTKVMIFSQYRESVREIADMLSRHFPV 484
Query: 489 VKATEFIGQSS-GK---ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
++ FIG SS GK KGQ+QK Q V+ KFR GGYN +V+T +GEEGLDI EVDL+
Sbjct: 485 IQVMSFIGHSSTGKNKSGGKGQTQKEQIEVIMKFREGGYNTLVSTCVGEEGLDIGEVDLI 544
Query: 545 ICFDANVSPLRMIQRMGRTGRKHDGRI 571
+CFDA+ SP+R+IQRMGRTGRK GRI
Sbjct: 545 VCFDAHKSPVRLIQRMGRTGRKRQGRI 571
>gi|21752288|dbj|BAC04159.1| unnamed protein product [Homo sapiens]
Length = 669
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/512 (44%), Positives = 313/512 (61%), Gaps = 35/512 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG + R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y H RK+E + V +G+E I +++ + L
Sbjct: 259 ITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQ--------------QSISHG 438
+R Y L + G+ SK NED K+ ++ +I G
Sbjct: 379 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFARTRSTSANGISAIQQG 437
Query: 439 AQS-------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
++ PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 438 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLS 497
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL
Sbjct: 498 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDL 557
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
+ICFD+ SP+R++QRMGRTGRK GRI I
Sbjct: 558 IICFDSQKSPIRLVQRMGRTGRKRQGRIVIIL 589
>gi|23273574|gb|AAH36056.1| FANCM protein [Homo sapiens]
gi|119586188|gb|EAW65784.1| Fanconi anemia, complementation group M, isoform CRA_d [Homo
sapiens]
gi|325463111|gb|ADZ15326.1| Fanconi anemia, complementation group M [synthetic construct]
Length = 669
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/512 (44%), Positives = 313/512 (61%), Gaps = 35/512 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG + R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y H RK+E + V +G+E I +++ + L
Sbjct: 259 ITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQ--------------QSISHG 438
+R Y L + G+ SK NED K+ ++ +I G
Sbjct: 379 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFARTRSTSANGISAIQQG 437
Query: 439 AQS-------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
++ PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 438 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLS 497
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL
Sbjct: 498 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDL 557
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
+ICFD+ SP+R++QRMGRTGRK GRI I
Sbjct: 558 IICFDSQKSPIRLVQRMGRTGRKRQGRIVIIL 589
>gi|295148218|ref|NP_001171151.1| Fanconi anemia, complementation group M [Xenopus laevis]
gi|223929916|gb|ACN24616.1| Fanconi anemia protein [Xenopus laevis]
Length = 2166
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 228/517 (44%), Positives = 307/517 (59%), Gaps = 39/517 (7%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D A WIYP N P+RDYQF I+ TAL NTLV LPTGLGKT IAAVV+YNF+RW+P
Sbjct: 177 FDLAAGSLWIYPTNYPLRDYQFNISYTALLQNTLVCLPTGLGKTFIAAVVMYNFYRWYPS 236
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GKIVF AP++PLV QQIEAC ++GIPQ +MTG R + W+T RVFF+TPQV+
Sbjct: 237 GKIVFMAPTKPLVAQQIEACFRVMGIPQGHMAEMTGSTQAQNRKNIWETHRVFFLTPQVM 296
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
D+ G C + CLVIDEAH+A GN+AYC +REL + Q RILAL+ATPG ++
Sbjct: 297 VNDLTRGACPALEIKCLVIDEAHKALGNHAYCQVVRELTNYTNQFRILALSATPGGDTKS 356
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+Q ++ NL IS +E R+E D+ Y H R++E V +G+E + +++ + R
Sbjct: 357 VQQVVSNLLISQIELRSEDSSDIQPYSHARQLEKFVVPLGEELESVQKTYLQLLDTFAGR 416
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L +L RD L+ ++ SRD+FR+ PP N+ + G +E + I+LYH LL
Sbjct: 417 LIQNNVLSRRDIPNLTKYQIILSRDQFRKNPPANIIGAQQGVIEGDYALCISLYHGYELL 476
Query: 394 SSHGIRPAYEMLE--------------EKLKQGSFARFMSKNEDI---RKV-----KLLM 431
G R Y L E + G F + E + KV LL
Sbjct: 477 LQMGTRSLYSYLHGIIDGSKGMTRARNELSRNGDFMELYKQLEKMFSDTKVAEGNGSLLF 536
Query: 432 QQSISHGAQS------PKLSKMLEVLVDHFKT----------KDPKHSRVIIFSNFRGSV 475
S+ A+ PKL K+ EV+V HFK+ + P+ +R++IFS+FR SV
Sbjct: 537 NSSLRADAKKPFLYSHPKLKKLEEVVVQHFKSWKNGDQNSSNQTPEGTRIMIFSSFRDSV 596
Query: 476 RDIMNALATIGDLVKATEFIGQSS-GKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEE 534
++I L V+ F+G SS GK KG +QK Q V+++FR GG+N +V+T +GEE
Sbjct: 597 QEIAEMLNHHHPTVRVMTFVGHSSAGKGVKGFTQKEQLEVVKRFREGGFNTLVSTCVGEE 656
Query: 535 GLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
GLDI EVDL+ICFDA SP+R++QRMGRTGRK GRI
Sbjct: 657 GLDIGEVDLIICFDAQKSPIRLVQRMGRTGRKRQGRI 693
>gi|260836711|ref|XP_002613349.1| hypothetical protein BRAFLDRAFT_118736 [Branchiostoma floridae]
gi|229298734|gb|EEN69358.1| hypothetical protein BRAFLDRAFT_118736 [Branchiostoma floridae]
Length = 2342
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/504 (44%), Positives = 306/504 (60%), Gaps = 43/504 (8%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D A K WIYP N PVR+YQ+ I ALF NTLV LPTGLGKT IAAVV+YNF+RW+P
Sbjct: 89 FDLSAGKLWIYPTNYPVREYQYNIVHQALFKNTLVTLPTGLGKTFIAAVVMYNFYRWYPM 148
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GK++F AP++PLV QQIEAC NI+GIPQ T +MTG + P++R W+ KRVFF+TPQV+
Sbjct: 149 GKVIFMAPTKPLVAQQIEACFNIMGIPQNDTAEMTGSMPPSERKRAWQEKRVFFLTPQVM 208
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
D+ G C + CLV+DEAH+A GN+A+C ++EL+ +Q R+LAL+ATPG +
Sbjct: 209 VNDLSRGACPADDVKCLVVDEAHKALGNHAFCQVVQELVKFTLQFRVLALSATPGGDLKG 268
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+Q ++ NL I+ +E R+E D+ Y H RK+E I V +G + ++ +R V+ + +R
Sbjct: 269 VQQVLSNLLITHVELRSEDSADIQPYTHERKVEKIVVPLGDQLKQLQDRYLAVVGVFVAR 328
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLP-QIKFGEVEAYFGALITLYHIRRL 392
L + RD ++ LL SRD FR PPP ++ G VE F I+LYH L
Sbjct: 329 LVRNKAMFCRDPAKVTKFQLLKSRDLFRANPPPEAQNRVLQGCVEGDFATCISLYHGYEL 388
Query: 393 LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLV 452
L HG++ Y L A M + +K + L AQ+P M+ L
Sbjct: 389 LLQHGMKSFYSFL---------ANIMEDEKGSKKKREL--------AQNPDFMLMMGELK 431
Query: 453 DHFKTKD------------------------PKHSRVIIFSNFRGSVRDIMNALATIGDL 488
+ F D P +RV+IF+ +R SV++I + L L
Sbjct: 432 EMFNPSDGSASVGGYAHGQEAAGSSTQAATKPAATRVMIFAQYRDSVQEIADILNHHRPL 491
Query: 489 VKATEFIGQ-SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
V+ FIGQ S+GK KG +QK Q AV++KFR GGYNV+V+T +GEEGLDI +VDL++CF
Sbjct: 492 VRVMTFIGQASTGKVKKGFTQKEQLAVMKKFREGGYNVLVSTCVGEEGLDIGDVDLIVCF 551
Query: 548 DANVSPLRMIQRMGRTGRKHDGRI 571
DA+ SP+R++QRMGRTGRK GRI
Sbjct: 552 DAHKSPIRLVQRMGRTGRKRQGRI 575
>gi|355778552|gb|EHH63588.1| hypothetical protein EGM_16587 [Macaca fascicularis]
Length = 2052
Score = 444 bits (1143), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/510 (43%), Positives = 306/510 (60%), Gaps = 37/510 (7%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y + RKIE + V +G+E I +++ + L
Sbjct: 259 ITNLLIGQIELRSEDSPDILAYSYERKIEKLIVPLGEELAAIQKTYIQILESFAHSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGVIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQQSISHGAQS----------- 441
+R Y L + G+ SK NED K+ ++ +H +
Sbjct: 379 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFAHTRSTSADSVSAIQQA 437
Query: 442 -----------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNAL 482
PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L
Sbjct: 438 GDKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTSEKKRDETRVMIFSSFRDSVQEIAEML 497
Query: 483 ATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR-AGGYNVIVATSIGEEGLDIMEV 541
+ +++ F+G +SGK++KG +QK Q V F+ GGYN +V+T +GEEGLDI EV
Sbjct: 498 SQHQPIIRVMTFVGHASGKSTKGFTQKEQLEVKSYFKNGGGYNTLVSTCVGEEGLDIGEV 557
Query: 542 DLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
DL+ICFD+ SP+R++QRMGRTGRK GRI
Sbjct: 558 DLIICFDSQKSPIRLVQRMGRTGRKRQGRI 587
>gi|334310595|ref|XP_003339511.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein-like
[Monodelphis domestica]
Length = 2027
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/498 (45%), Positives = 310/498 (62%), Gaps = 25/498 (5%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 94 AGAVWIYPTNYPVRDYQLRISEAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 153
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC ++GIPQ +MTG R W KRV F+TPQV+ D+
Sbjct: 154 FMAPTKPLVAQQIEACSRVMGIPQGHMAEMTGSTQAFIRKEIWHKKRVLFLTPQVMMNDL 213
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPG+ + +Q +
Sbjct: 214 SRGACPAVKIKCLVIDEAHKALGNYAYCQVVRELVKYTKHFRILALSATPGNDTKAVQQV 273
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
+ NL I +E R+E D+ + H R+IE + V +G+E V I N +++ + SRL +
Sbjct: 274 VSNLLIGQIELRSEDSSDILPFTHERRIEKLVVSLGEELVTIQNTYIQILETFASRLIRV 333
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L +D L+ ++ +RD FR+ ++ + G +E F I+LYH LL G
Sbjct: 334 NVLMRQDIPNLTKFQIILARDLFRKKLSSHILGGQQGIIEGDFAICISLYHGYELLQQMG 393
Query: 398 IRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSIS--HGAQ----------- 440
+R Y L + K + R +S+NE ++ L+ + S H Q
Sbjct: 394 MRSLYIFLCGIMDGTKSMTRTRNELSRNEQFMELFELLGKMFSDRHPNQIGPNDKKFIYS 453
Query: 441 SPKLSKMLEVLVDHFKT-KDPKHS------RVIIFSNFRGSVRDIMNALATIGDLVKATE 493
PKL K+ EV+V+HF+T KD S RV+IFS+FR SV++I L + V+
Sbjct: 454 HPKLKKLEEVVVEHFRTWKDQNTSEKKCDTRVMIFSSFRDSVQEIAEMLQKQPE-VRVMT 512
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL+ICFDA SP
Sbjct: 513 FVGHASGKSTKGLTQKEQLEVVKRFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSP 572
Query: 554 LRMIQRMGRTGRKHDGRI 571
+R++QRMGRTGRK +GRI
Sbjct: 573 VRLVQRMGRTGRKREGRI 590
>gi|351710100|gb|EHB13019.1| Fanconi anemia group M protein [Heterocephalus glaber]
Length = 1664
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/494 (45%), Positives = 300/494 (60%), Gaps = 37/494 (7%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++TALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 80 AGALWIYPTNCPVRDYQLHISRTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 139
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 140 FMAPTKPLVTQQIEACYQVMGIPQAHMAEMTGSTQAFTRKEIWLSKRVLFLTPQVMVNDL 199
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLV+DEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 200 TRGACPAADIKCLVVDEAHKALGNYAYCQVVRELIKYTNHFRILALSATPGSDIKAVQQV 259
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE------------ 325
I NL I +E R+E D+ Y H R++E + V +G+E I +
Sbjct: 260 ITNLLIGQIELRSEDSADILPYSHERRVEKLIVPLGEELAAIQKTYIQASHFYHNFDNEP 319
Query: 326 VIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALIT 385
++ + S L +L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+
Sbjct: 320 ILESFASPLIHRNVLMRRDISNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAVCIS 379
Query: 386 LYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLS 445
LYH LL G+R Y F+ D K SH PKL
Sbjct: 380 LYHGYELLQQMGMRSLY-------------FFLCGIMDGTKGDKDKTFCYSH----PKLK 422
Query: 446 KMLEVLVDHFKTKDPKHS--------RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ 497
K+ EV+V+HFK+ + ++S RV+IFS+FR SV++I L +++ F+G
Sbjct: 423 KLEEVVVEHFKSWNAQNSSGKKCDETRVMIFSSFRDSVQEIAEMLLKHKPIIRVMTFVGH 482
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
+SGK+ KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL+ICFDA SP+R+I
Sbjct: 483 ASGKSMKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDAQRSPIRLI 542
Query: 558 QRMGRTGRKHDGRI 571
QRMGRTGRK GRI
Sbjct: 543 QRMGRTGRKRQGRI 556
>gi|109083473|ref|XP_001096802.1| PREDICTED: Fanconi anemia group M protein isoform 2 [Macaca
mulatta]
Length = 2050
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/512 (43%), Positives = 306/512 (59%), Gaps = 35/512 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y + RKIE + V +G+E I +++ + L
Sbjct: 259 ITNLLIGQIELRSEDSPDILAYSYERKIEKLIVPLGEELAAIQKTYIQILESFAHSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGVIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQQSISHGAQS----------- 441
+R Y L + G+ SK NED K+ ++ +H +
Sbjct: 379 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFAHTRSTSADSVSAIQQG 437
Query: 442 ----------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 438 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTSEKKRDETRVMIFSSFRDSVQEIAEMLS 497
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V++ R GG N +V T +GEEGLDI EVDL
Sbjct: 498 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVIKLARDGGSNSLVYTCVGEEGLDIGEVDL 557
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
+ICFD+ SP+R++QRMGRTGRK GRI I
Sbjct: 558 IICFDSQKSPIRLVQRMGRTGRKRQGRIVVIL 589
>gi|241568989|ref|XP_002402624.1| conserved hypothetical protein [Ixodes scapularis]
gi|215500065|gb|EEC09559.1| conserved hypothetical protein [Ixodes scapularis]
Length = 1081
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/494 (44%), Positives = 314/494 (63%), Gaps = 24/494 (4%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D A +TWIYP N PVRDYQF I ++ LF NT+V LPTGLGKT IAAVV+YNF+RW+P
Sbjct: 75 FDVVAGQTWIYPTNYPVRDYQFNIVQSCLFKNTMVILPTGLGKTFIAAVVMYNFYRWYPT 134
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GKIVF AP++PLV QQIEAC+ I+GIP E T++MTG + +RA+ W+ KRVFF+TPQV+
Sbjct: 135 GKIVFTAPTKPLVAQQIEACYKIMGIPLEDTLEMTGNVPAPRRATAWREKRVFFLTPQVM 194
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
D+ + + CLVIDEAH+A GNYAYC ++E+M Q R++AL+ATPGS
Sbjct: 195 MNDLLRNALKPQDVKCLVIDEAHKALGNYAYCQVVQEIMKYTNQFRVVALSATPGSDVNA 254
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
++ ++ NL IS +E R+E D+ Y R I+ + V +G E VE+ + +V+ Y R
Sbjct: 255 VRQVLSNLMISHVELRSEESIDIQKYTQRRTIDKVVVPLGHEIVEVKRKFLQVVCMYLER 314
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L G L + ++L LL ++ F Q+PP + G+++ F LI+LYH LL
Sbjct: 315 LERHGALPRLNPESLGKFRLLKLKETFLQSPPQGMAPRLVGQLQGDFSLLISLYHAYELL 374
Query: 394 SSHGIRPAYEMLE--------------EKLKQGSFARFMSKNEDIRKVKLLMQQSISHGA 439
+HG+RP + L+ E + F + D+++ +L + + H
Sbjct: 375 LAHGLRPFFHFLKGIVDGEKSQPRVRYELMHHPGFNELYT---DLKE-RLGVSSVVGH-- 428
Query: 440 QSPKLSKMLEVLVDHFKT-KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQS 498
PKL K+ E+++DHFK +RV+IFS +R SV++I + L L+KA F+GQ+
Sbjct: 429 --PKLIKLEEIVLDHFKNFGKSAETRVMIFSQYRDSVKEISSYLNRHRPLIKAMNFMGQN 486
Query: 499 SGKAS-KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
+ +G +QK Q V+++FR GGYNV+V+T +GEEGLDI E+DL++C+DA SP+R++
Sbjct: 487 QKTGTARGFTQKEQLLVVKRFRDGGYNVLVSTCVGEEGLDIGEIDLIVCYDAPKSPIRLV 546
Query: 558 QRMGRTGRKHDGRI 571
QRMGRTGRK GRI
Sbjct: 547 QRMGRTGRKRAGRI 560
>gi|395504025|ref|XP_003756361.1| PREDICTED: Fanconi anemia group M protein, partial [Sarcophilus
harrisii]
Length = 1871
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/512 (44%), Positives = 305/512 (59%), Gaps = 36/512 (7%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ AL NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 93 AGAVWIYPTNFPVRDYQLRISEAALSCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 152
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC ++GIPQ +MTG R W KRV F+TPQV+ D+
Sbjct: 153 FMAPTKPLVAQQIEACSRVMGIPQRHMAEMTGSTQAFARKEIWHNKRVLFLTPQVMINDL 212
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 213 SRGACPAVKIKCLVIDEAHKALGNYAYCQVVRELVKYTKHFRILALSATPGSDTKAVQQV 272
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
+ NL I +E R+E D+ + H R+IE I V +G+E V + N +V+ + SRL +
Sbjct: 273 VSNLLIGQIELRSEDSSDILPFTHERRIEKIVVPLGEELVTVQNTYIQVLEAFASRLMRV 332
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L +D L+ ++ +RD FR+ P+ + G +E F I+LYH LL G
Sbjct: 333 NVLMRKDIPNLTKFQIILARDLFRKNSSPHTLGGQQGIIEGDFAICISLYHGYELLQQMG 392
Query: 398 IRPAYEMLEEKLKQGSFARFMSKNEDIRKVKL--LMQQ------------------SISH 437
+R Y L + G+ +KNE R + L +Q I
Sbjct: 393 MRSLYIFL-CGIMDGTKGMTRTKNELSRNEQFMELFEQLGNMFSDRNTTSEIVDGNPIQR 451
Query: 438 GAQS-------PKLSKMLEVLVDHFKTKDPKHS-------RVIIFSNFRGSVRDIMNALA 483
G PKL K+ EV+V+HF+T ++S RV+IFS+FR SV++I L
Sbjct: 452 GHNDKKFIYSHPKLKKLEEVVVEHFRTWKDQNSTEKKCDTRVMIFSSFRDSVQEIAEMLH 511
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
V+ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL
Sbjct: 512 H-QPTVRVMTFVGHASGKSTKGLTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDL 570
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
+ICFDA SP+R++QRMGRTGRK GRI I
Sbjct: 571 IICFDAQKSPVRLVQRMGRTGRKRQGRIVVIL 602
>gi|321472411|gb|EFX83381.1| hypothetical protein DAPPUDRAFT_48010 [Daphnia pulex]
Length = 657
Score = 434 bits (1117), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/551 (42%), Positives = 324/551 (58%), Gaps = 23/551 (4%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D A TW YP N PVR YQ I +T LF NTLV LPTGLGKT IAAVV+YNFFRW+P
Sbjct: 93 FDMGAGDTWFYPTNKPVRKYQRDIVETCLFHNTLVTLPTGLGKTFIAAVVMYNFFRWYPR 152
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GKI+F AP++PLV QQI+AC+ I+G+P + T +MTG +SP R + W+ KRVFF+TPQ+L
Sbjct: 153 GKIIFMAPTKPLVAQQIQACYEIMGLPLDSTSEMTGAMSPADRKTQWREKRVFFLTPQIL 212
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
DI + CLV+DEAH+A GNYAY ++EL + RILAL+ATPGS +
Sbjct: 213 TNDISRAAFPASEIKCLVLDEAHKALGNYAYVQVVQELCNHGAVFRILALSATPGSDLKA 272
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
IQ +I NL I+ LE RNE D+ Y H R ++ + V +G E ++ + + R
Sbjct: 273 IQQVIVNLRIAKLEVRNEESPDIVPYAHARTMDKVVVPLGPEITQVRDTFLNIFSVCARR 332
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L G+L ++D +L+ LL +RDKFRQ PP N P+ + G +E F ITL H LL
Sbjct: 333 LMESGVLFSKDIGSLTKYMLLQTRDKFRQNPPDNFPRSRSGIMEGDFALCITLTHALELL 392
Query: 394 SSHGIRPAYEMLEEK--------------LKQGSFARFMSKNEDIRKVKLLMQQSISHGA 439
HGIR Y L K + G F+ D+ K K I
Sbjct: 393 LQHGIRGFYNFLAGKTDAADGETGHNRTRTELGKVTGFIEMMSDL-KSKFGNDCQIGSAV 451
Query: 440 QSPKLSKMLEVLVDHFKT--KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ 497
PKL+++ E++++HF+ K+ + +RV+IFS +R SV +I+ L L+KA F+G
Sbjct: 452 SHPKLTRLKEIVLEHFQKAEKEGRPTRVMIFSQYRDSVNEIVALLEEYAPLIKAMSFVGH 511
Query: 498 ---SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
S G +KG +Q Q ++++F G YN +VAT +GEEGLDI +VD++IC+D + SP+
Sbjct: 512 GNSSGGVKTKGFTQADQIRIIKQFSEGDYNTLVATCVGEEGLDIGDVDMIICYDVHKSPV 571
Query: 555 RMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIFKEKLTAA 614
R++QR GRTGR+ DGRI + + E + Q +S+ K + + + P KE L
Sbjct: 572 RLVQRCGRTGRQRDGRIVMLMTEGKE--EHTYNQCMSQKKNLLKN-IVGNPKLKEFLLKQ 628
Query: 615 ETDLIAKYFHP 625
E LI ++ P
Sbjct: 629 EPRLIPRHLSP 639
>gi|301106548|ref|XP_002902357.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262098977|gb|EEY57029.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 829
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/487 (47%), Positives = 314/487 (64%), Gaps = 26/487 (5%)
Query: 93 QIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP 152
QID EAA+ ++YP N +RDYQ AI + AL+ NTLV+LPTGLGKTL+AAVV+YNF+RWFP
Sbjct: 175 QIDYEAAQHFVYPTNYAIRDYQLAIAEKALYHNTLVSLPTGLGKTLVAAVVMYNFYRWFP 234
Query: 153 DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQV 212
GKIVF AP++PLV QQI+ACH I+GIP T ++ G + PT R W ++RVFF TPQ
Sbjct: 235 TGKIVFMAPTKPLVAQQIKACHEIMGIPLSDTAELQGNVPPTMRRVLWDSRRVFFCTPQS 294
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQ 272
L+ D++ G C + VC+V+DEAHRATGNYAYC ++E+ + R+LAL+ATPG+K
Sbjct: 295 LQNDLRRGVCAAEKFVCIVVDEAHRATGNYAYCCVVQEIEAKTPFFRVLALSATPGAKFD 354
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332
IQ ++ NL IS +E R+ D DV Y H R+ E+I +G + +EI + + P
Sbjct: 355 VIQDVVTNLRISHIESRSADDSDVKKYTHARQEEVIVCRLGAQIMEIKAQFLKFFTPIIQ 414
Query: 333 RLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392
RL ++ N D + LS +L +R+KFR++ PN + E + L++L H + L
Sbjct: 415 RLLRGDIIHNSDPEKLSSWYVLQAREKFRKS--PNYASNRSAESD--LALLVSLLHAKSL 470
Query: 393 LSSHGI---RPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLE 449
L+ HG+ R E+ K+G + SK E M QS H PKL K+ +
Sbjct: 471 LTGHGLSSFRDQIMSWMEERKKGKMS--WSKRE--------MLQSPDH----PKLVKLRQ 516
Query: 450 VLVDHFKTKDPKHS--RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ-SSGKA--SK 504
VL++HF+ S R I+F+ +R SV +I+ L + L+ A FIGQ ++GKA +K
Sbjct: 517 VLLEHFQRHSAGGSSTRAIVFTQYRASVSEIVALLRPLAPLLNAQPFIGQGATGKAKENK 576
Query: 505 GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTG 564
GQSQKVQQ ++ +FR G +NV+VAT I EEGLDI EVDL++ FDA SP+RMIQRMGRTG
Sbjct: 577 GQSQKVQQEIVRRFRLGEFNVLVATCIAEEGLDIGEVDLIVSFDALTSPVRMIQRMGRTG 636
Query: 565 RKHDGRI 571
RK GR+
Sbjct: 637 RKRVGRV 643
>gi|345306292|ref|XP_003428451.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M
protein-like, partial [Ornithorhynchus anatinus]
Length = 2081
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 221/510 (43%), Positives = 305/510 (59%), Gaps = 37/510 (7%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N+P R YQ + + ALF NTLV LPTGLGKTL+AAV+IYNF+RWFP GK+V
Sbjct: 14 AGGVWIYPTNLPPRSYQLRMAEAALFRNTLVCLPTGLGKTLVAAVLIYNFYRWFPAGKVV 73
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQ AC ++ IP +TG R W +KRV F+TPQV+ D+
Sbjct: 74 FLAPTKPLVAQQRLACARLMAIPARHMALLTGSTQALTRKEIWTSKRVLFLTPQVMVNDL 133
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
GTC + CLV+DEAHRA GN+AYC +REL R+LAL+ATPGS +++Q +
Sbjct: 134 SRGTCPAVTVKCLVVDEAHRALGNHAYCQVVRELTKYTTHFRVLALSATPGSDTKSVQQV 193
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
+ NL I +E R+E D+ Y H R++E + V +G++ I + +V+ + S L +
Sbjct: 194 VSNLLIGQIELRSEDSPDIIPYSHERRVEKLVVPLGEDLAAIQDAYIQVLEAFASPLIRM 253
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G VE I+LYH LL G
Sbjct: 254 NVLTRRDISNLTKYQIVLARDQFRKNPSPNVVGIQQGVVEGQLALCISLYHGFELLQQMG 313
Query: 398 IRPAYEMLEEKLKQGSFARFMSKNE-----DIRKVKLLMQ------------------QS 434
+R Y M + G+ S+NE D K+ L++
Sbjct: 314 LRSFY-MFLRGIMDGTKGLARSRNELGRNGDFMKLYKLLEGMFPDSRTPTGSNVGIGATR 372
Query: 435 ISHGAQS-----PKLSKMLEVLVDHFKT-KDPKHS-------RVIIFSNFRGSVRDIMNA 481
I H Q PKL K+ EV+V+HF+T KD + S RV+IFS+FR SV++I +
Sbjct: 373 IGHEDQKIFYSHPKLKKLEEVVVEHFRTWKDHRVSENGCDSTRVMIFSSFRDSVQEIADM 432
Query: 482 LATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
L +++A F+G +SGK KG +QK Q V+ +FR GGYN +V+T +GEEGLDI EV
Sbjct: 433 LHQHHPVIRAMSFVGHASGKNVKGFTQKEQLEVVRQFRDGGYNTLVSTCVGEEGLDIGEV 492
Query: 542 DLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
DL++CFDA SP+R++QRMGRTGRK GRI
Sbjct: 493 DLIVCFDAQKSPIRLVQRMGRTGRKRQGRI 522
>gi|47230040|emb|CAG10454.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1724
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 224/529 (42%), Positives = 320/529 (60%), Gaps = 56/529 (10%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D+ +A+ WIYP N PVR+YQ +++ ALF NTLV LPTGLGKT IA+VV+YNF+RW+P
Sbjct: 134 FDSSSAEVWIYPTNYPVREYQLKMSEAALFQNTLVCLPTGLGKTFIASVVMYNFYRWYPS 193
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GKIVF AP++PLV QQIEAC+ ++GIPQ ++TG + +R W+TKRVFF+TPQV+
Sbjct: 194 GKIVFMAPTKPLVAQQIEACYKVMGIPQAHMAELTGSTAAKQRQEVWRTKRVFFLTPQVM 253
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
D+ TC + + C+VIDEAH+A GN+AYC IR+L S +Q RILAL+ATPG ++
Sbjct: 254 VNDLSRETCPAQQVKCVVIDEAHKALGNHAYCQVIRQLSSQTLQFRILALSATPGGDAKS 313
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+Q ++ NL IS +E R++ D+ +Y H R +E + V +G+ R +V+ +TSR
Sbjct: 314 VQSVVSNLLISHIELRSDESPDIRAYSHQRNVEKVVVPLGEILSAHQARYLQVLEKFTSR 373
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKF------GEVEAYFGALITLY 387
L ++ ++D +TLS L+ +RD+FR+ PP ++ + G +E F I+LY
Sbjct: 374 LVQSRVMAHKDLRTLSKYQLILARDQFRKNPPQHIKAQHYTSGPQQGVLEGDFALCISLY 433
Query: 388 HIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNE------------------------- 422
H LL G+R + + + + GS +KNE
Sbjct: 434 HGYELLMQMGLRSLF-LYFQGIMDGSREMSRAKNELQRTPTFMDLYQEMEAMFVKPSAEN 492
Query: 423 --DIRKVKLLMQQS-----ISHGAQSPKLSKMLEVLVDHFK-----TKDPK-------HS 463
D V LL + S SH PKL K+ EV++ HF+ + D +
Sbjct: 493 KFDSNCVSLLREGSDEPFVYSH----PKLQKLEEVVLQHFRLWAESSADKNGCGAQEVST 548
Query: 464 RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSS-GKASKGQSQKVQQAVLEKFRAGG 522
RV+IFS+FR SV++I L L++ F+GQ+S GK KG +QK Q V+ +FR GG
Sbjct: 549 RVMIFSSFRESVQEIAAMLNRHAPLIRVMTFMGQASAGKGVKGFTQKEQLEVVHRFRQGG 608
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+N +V+T +GEEGLDI EVDL++CFDA +P R++QRMGRTGRK GRI
Sbjct: 609 FNTLVSTCVGEEGLDIGEVDLIVCFDAQKNPTRLVQRMGRTGRKRQGRI 657
>gi|432938949|ref|XP_004082559.1| PREDICTED: Fanconi anemia group M protein homolog [Oryzias latipes]
Length = 1928
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 229/556 (41%), Positives = 332/556 (59%), Gaps = 48/556 (8%)
Query: 48 SKANKKPSTCKQSTLDKFFGNLGPKPQGTEE-FNEGSSFDESLCHVQI----------DA 96
S K +T +++L FG+ TE+ E D+ L V + D+
Sbjct: 43 SSKTAKVATTPRASLWTEFGHTSENSGKTEDILQENEDDDDELMVVAVYEAEKNFPDFDS 102
Query: 97 EAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKI 156
+AK WIYP N P+R+YQ I++ ALF NTLV LPTGLGKT IA+VV+YNF+RW+P GKI
Sbjct: 103 SSAKVWIYPTNYPIRNYQLKISEAALFQNTLVCLPTGLGKTFIASVVMYNFYRWYPSGKI 162
Query: 157 VFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKD 216
VF AP++PLV QQIEAC+ ++GIPQ ++TG + +R W++KRVFF+TPQV
Sbjct: 163 VFMAPTKPLVAQQIEACYKVMGIPQTHMAELTGSTAAKQRQDVWRSKRVFFLTPQV---- 218
Query: 217 IQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQH 276
C+VIDEAH+A GN+AYC IR+L S +Q R+LAL+ATPG +++Q
Sbjct: 219 -----------KCVVIDEAHKALGNHAYCQVIRQLSSQTLQFRVLALSATPGGDAKSVQA 267
Query: 277 IIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSA 336
+I NL IS +E R+E D+ ++ H R ++ + V +G+ R EV++ + SRL
Sbjct: 268 VISNLLISHIELRSEESLDIQAHSHQRSVDKVVVPLGEALSAYQTRYLEVLKKFMSRLVQ 327
Query: 337 IGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSH 396
++ +D ++LS L+ +RD+FR+ PPP++ + G +E F I+LYH LL
Sbjct: 328 NRVMSQKDLRSLSKYQLILARDQFRKNPPPHIKSPQQGMLEGDFALCISLYHGYELLMQM 387
Query: 397 GIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLL--------MQQSISHGAQS------P 442
G+R + + + + GS +KNE R + M S G + P
Sbjct: 388 GLRSLFFYV-QGIMDGSREMSRTKNELQRTPTFMDLYHEMEAMFVKPSAGPDAPFVYSHP 446
Query: 443 KLSKMLEVLVDHFKTKDPKHS------RVIIFSNFRGSVRDIMNALATIGDLVKATEFIG 496
KL K+ EV++ HF+ +S RV+IFS+FR SV++I L L++ F+G
Sbjct: 447 KLKKLEEVVLQHFRVWAESNSDNHVSTRVMIFSSFRESVQEIAAMLNRHSPLIRVMTFMG 506
Query: 497 Q-SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
Q S+GK KG +QK Q V+++FR GG+N +V+T +GEEGLDI EVDL++CFDA +P+R
Sbjct: 507 QASAGKGVKGFTQKEQLEVVQRFRQGGFNTLVSTCVGEEGLDIGEVDLIVCFDAQKNPIR 566
Query: 556 MIQRMGRTGRKHDGRI 571
++QRMGRTGRK GRI
Sbjct: 567 LVQRMGRTGRKRQGRI 582
>gi|355693246|gb|EHH27849.1| hypothetical protein EGK_18153 [Macaca mulatta]
Length = 2016
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/513 (43%), Positives = 301/513 (58%), Gaps = 43/513 (8%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y + RKIE + V +G+E I +++ + L
Sbjct: 259 ITNLLIGQIELRSEDSPDILAYSYERKIEKLIVPLGEELAAIQKTYIQILESFAHSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGVIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQQSISHGAQS----------- 441
+R Y L + G+ SK NED K+ ++ +H +
Sbjct: 379 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFAHTRSTSADSVSAIQQA 437
Query: 442 -----------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNAL 482
PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L
Sbjct: 438 GDKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTSEKKRDETRVMIFSSFRDSVQEIAEML 497
Query: 483 ATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVD 542
+ +++ F+G +SGK++KG +QK Q V F+ G T +GEEGLDI EVD
Sbjct: 498 SQHQPIIRVMTFVGHASGKSTKGFTQKEQLEVKSYFKNG-------TCVGEEGLDIGEVD 550
Query: 543 LVICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
L+ICFD+ SP+R++QRMGRTGRK GRI I
Sbjct: 551 LIICFDSQKSPIRLVQRMGRTGRKRQGRIVVIL 583
>gi|345566720|gb|EGX49662.1| hypothetical protein AOL_s00078g151 [Arthrobotrys oligospora ATCC
24927]
Length = 1021
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/555 (41%), Positives = 321/555 (57%), Gaps = 38/555 (6%)
Query: 43 NFNLCSKANKKPSTCKQSTLDKFFGNLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTW 102
+F N P +Q TL + G + + T + DE+ H +ID EAAKTW
Sbjct: 77 DFRPAPTTNAAPGNLRQRTLFGDVADEGEERETTVRSWRLVNHDEAPTHHKIDREAAKTW 136
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
IYP NV RDYQF ITK ALF+N LVALPTGLGKT IAA V+YN++RW P+ +I+F AP+
Sbjct: 137 IYPTNVSHRDYQFNITKRALFTNVLVALPTGLGKTFIAATVMYNWYRWAPESQIIFMAPT 196
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV QQ++ACH IVGIP+ T +TG +SP RA +W KR+FF+TPQ LE D+ SG C
Sbjct: 197 KPLVAQQVDACHKIVGIPKSDTCLLTGHVSPGHRADYWNEKRLFFLTPQTLETDLTSGRC 256
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
K +V +V+DEAHRATG YAYC IR + R++ALTATPGSK +++Q +I +L
Sbjct: 257 DPKRIVLIVVDEAHRATGEYAYCKVIRYIRRFNNSFRVMALTATPGSKVESVQAVITSLG 316
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I+ E R E D+ Y+H R+I+L + + E I + + ++P +L+ +
Sbjct: 317 IARTEIRTEESIDIRQYIHQREIQLEKFPLTDEITMIRDLFSKALKPMLEKLNNMKACYI 376
Query: 343 RDYQTLSPVDLLNSRDKFRQAP-----PPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
D L+ L ++ ++ +P PP L G + + F L +L + LL HG
Sbjct: 377 TDPANLTAFALTEAKKRYIVSPAGRAAPPGLR----GSILSLFANLSSLAYSWELLLYHG 432
Query: 398 IRPAYEMLEE------------------KLKQGSFARFMSKNEDIRKVKLLMQQSISHGA 439
IRP Y+ L E + F M++ + K +
Sbjct: 433 IRPFYDYLREFQNEKSSKSSGGGKAVSALFQDKQFLAMMNRCRGLTNEKEFLGH------ 486
Query: 440 QSPKLSKMLEVLVDHF---KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIG 496
PKL + ++ HF + K +RV++FSN+R S +I+ L ++K F+G
Sbjct: 487 --PKLDYLCGTILRHFTEAAERGEKDTRVMVFSNYRKSGDEILRVLKIHEPIIKPRIFVG 544
Query: 497 QSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
QS+G +G SQKVQQ +E+F+ G +NV+VATSIGEEGLDI EVD ++CFDA+ SP+RM
Sbjct: 545 QSAGTTGEGMSQKVQQETVERFKNGEFNVLVATSIGEEGLDIGEVDFIVCFDASASPIRM 604
Query: 557 IQRMGRTGRKHDGRI 571
+QRMGRTGRK G +
Sbjct: 605 LQRMGRTGRKRAGGV 619
>gi|194207332|ref|XP_001915885.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein
[Equus caballus]
Length = 2127
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/495 (44%), Positives = 301/495 (60%), Gaps = 34/495 (6%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK 155
A A WI P N PVRDYQ I + ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK
Sbjct: 154 ASAGPLWISPTNCPVRDYQLRIARAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK 213
Query: 156 IVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEK 215
+VF AP++PLV QQIEAC+ ++GIPQ +MTG I R W++KRV F+TPQV+
Sbjct: 214 VVFMAPTKPLVTQQIEACYRVMGIPQPDMAEMTGCIQAFTRKEIWRSKRVLFLTPQVMVN 273
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
D+ G+C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q
Sbjct: 274 DLSRGSCPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQ 333
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335
+I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 334 QVITNLLIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELAAIQKAYIQILETFASSLI 393
Query: 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395
+L+ RD +L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL
Sbjct: 394 QRNVLKRRDIPSLTKYQIILARDQFRKNPSPNIVGIQ-GIIEGEFAICISLYHGYELLQQ 452
Query: 396 HGIRPAYEML---EEKLKQGSFARF-MSKNEDIRKV------KLLMQQSISHGAQS---- 441
G+R Y L + K + A+ +S+NED + Q S G S
Sbjct: 453 MGMRSLYFFLCGIMDGTKGMTRAKNELSRNEDFMALYNHLEGMFAQTQGASAGGTSATQK 512
Query: 442 -----------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNAL 482
PKL K+ EV+VDHFK+ K +RV+IFS+FR SV++I L
Sbjct: 513 GDKDKTFFYSHPKLKKLEEVVVDHFKSWNAQNASEKKCDKTRVMIFSSFRDSVQEIAEML 572
Query: 483 ATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVD 542
+++ F+G +SGK+ KG +QK Q V+++FR+GGYN +V+T +GEEGLDI EVD
Sbjct: 573 LQHQPMIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVD 632
Query: 543 LVICFDANVSPLRMI 557
L+ICFDA SP+R+I
Sbjct: 633 LIICFDAQKSPIRLI 647
>gi|348680236|gb|EGZ20052.1| hypothetical protein PHYSODRAFT_312887 [Phytophthora sojae]
Length = 890
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/497 (44%), Positives = 317/497 (63%), Gaps = 24/497 (4%)
Query: 93 QIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP 152
QID EAA+ ++YP N +RDYQ I + AL+ NTLV+LPTGLGKTL+AAVV+YNF+RWFP
Sbjct: 217 QIDYEAAQHFVYPTNYSIRDYQLTIAEKALYHNTLVSLPTGLGKTLVAAVVMYNFYRWFP 276
Query: 153 DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQV 212
GKIVF AP++PLV QQI+ACH I+GIP T ++ G + PT R W ++RVFF TPQ
Sbjct: 277 TGKIVFMAPTKPLVAQQIKACHEIMGIPLPDTAELQGNVPPTMRRVLWNSRRVFFCTPQS 336
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQ 272
L+ D++ G C + VC+V+DEAHRATGNYAYC ++ + + RILAL+ATPG+K
Sbjct: 337 LQNDLRQGVCAAEKFVCIVVDEAHRATGNYAYCCVVQMIEAKTPFFRILALSATPGAKFD 396
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332
IQ ++ NL IS +E R+ D DV Y H R+ E+I +G + VE+ + P
Sbjct: 397 VIQDVVANLRISHIESRSADDPDVKKYTHARQEEVIVCRLGAQIVEVKTMFLKCFTPIIQ 456
Query: 333 RLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392
RL ++ D + LS +L +R++FR++P + E+ L++L H + L
Sbjct: 457 RLLRGNIIPFADPEKLSSWHVLQARERFRKSPSYASSR----SAESDLALLVSLLHAKSL 512
Query: 393 LSSHGIRPAYEML---EEKLKQGSFA---RFMSKNEDIRKVKLLMQQSISHGAQS----- 441
L+ HG+ + + E+ K+G + R M ++ + + ++L + ++ GA S
Sbjct: 513 LTGHGLSSFRDQILNWAEERKKGKMSWSKREMLQSSEFQSLELSL--GVTEGATSSANTA 570
Query: 442 --PKLSKMLEVLVDHFKTKDPKHS--RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ 497
PKL K+ EVL++HF+ S R I+F+ +R SV +I+ L + L+ FIGQ
Sbjct: 571 SHPKLVKLREVLLEHFQRHSAAGSSTRAIVFTQYRVSVSEIVALLRPLSPLLNVQPFIGQ 630
Query: 498 -SSGKA--SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
SSGK+ +KGQ+QKVQQ ++ +FR G +NV+VAT I EEGLDI EVDL++ FDA SP+
Sbjct: 631 GSSGKSKENKGQTQKVQQEIVRRFRLGEFNVLVATCIAEEGLDIGEVDLIVSFDALTSPV 690
Query: 555 RMIQRMGRTGRKHDGRI 571
RMIQRMGRTGRK GR+
Sbjct: 691 RMIQRMGRTGRKRVGRV 707
>gi|301786799|ref|XP_002928821.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein-like
[Ailuropoda melanoleuca]
Length = 2048
Score = 428 bits (1100), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/492 (43%), Positives = 299/492 (60%), Gaps = 32/492 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I +T+LF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 82 AGSLWIYPTNCPVRDYQLHIARTSLFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 141
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W++KRV F+TPQV+ D+
Sbjct: 142 FMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGSTQAFIRKEIWRSKRVLFLTPQVMVNDL 201
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 202 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 261
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E + V +G+E I +V+ + L
Sbjct: 262 ITNLRIGQIELRSEDSPDILPYSHERQVEKLVVPLGEELAAIQKAYIQVLEAFARSLIQR 321
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L +D L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 322 NVLMRKDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 381
Query: 398 IRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS------------ 441
+R Y L + K + A+ +S+NED K+ ++ +H +
Sbjct: 382 MRSLYFFLCGIMDGTKGMTRAKNELSRNEDFMKLYNHLECMFAHTRGTSANGFSTIQKGD 441
Query: 442 --------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALATI 485
PKL K+ EV+V+HFK+ K +RV+IFS+FR SV++I L
Sbjct: 442 KKKFFYSHPKLKKLEEVVVEHFKSWNTQNTSAKKCDETRVMIFSSFRDSVQEIAEMLLQH 501
Query: 486 GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
+++ F+G +SGK+ KG +QK Q V+++FR+GGYN +V+T +GEEGLDI EVDL+I
Sbjct: 502 QPVIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLII 561
Query: 546 CFDANVSPLRMI 557
CFDA SP+R++
Sbjct: 562 CFDAQKSPIRLV 573
>gi|426248444|ref|XP_004017973.1| PREDICTED: Fanconi anemia group M protein [Ovis aries]
Length = 2043
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/493 (44%), Positives = 296/493 (60%), Gaps = 33/493 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I +TALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 85 AGALWIYPTNCPVRDYQLHIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 144
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GI Q +MTG R W +KRV F+TPQV+ D+
Sbjct: 145 FMAPTKPLVTQQIEACYRVMGIRQSHMAEMTGSTQAFTRKEIWGSKRVLFLTPQVMVNDL 204
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 205 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 264
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E I V +G+E I +++ + S L
Sbjct: 265 ITNLLIGQIELRSEDSPDILPYSHERRVEKIVVPLGEELAAIQKAYVQILEAFASSLIQR 324
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L +D L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 325 NVLMKKDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 384
Query: 398 IRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS------------ 441
+R Y L + K + R +S+N D K+ + +H +
Sbjct: 385 MRSLYFFLCGIMDGTKGMTRVRNELSRNADFMKLYDHLDSMFAHTRSTSASGISAIQKGG 444
Query: 442 ---------PKLSKMLEVLVDHF------KTKDPK--HSRVIIFSNFRGSVRDIMNALAT 484
PKL K+ EV+V+HF KT D K +RV+IFS+FR SV++I L
Sbjct: 445 KDKKFCYSHPKLKKLEEVVVEHFKSWNAQKTSDKKCDETRVMIFSSFRDSVQEIAEMLLP 504
Query: 485 IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
+++ F+G +SGK+ KG +QK Q V+++FR+GGYN +V+T +GEEGLDI EVDL+
Sbjct: 505 HQPVIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLI 564
Query: 545 ICFDANVSPLRMI 557
ICFDA SP+R+I
Sbjct: 565 ICFDAQKSPIRLI 577
>gi|410898563|ref|XP_003962767.1| PREDICTED: Fanconi anemia group M protein homolog [Takifugu
rubripes]
Length = 1899
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/497 (42%), Positives = 311/497 (62%), Gaps = 36/497 (7%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D+ +AK WIYP N P+R+YQ +++ ALF NTLV LPTGLGKT IA+VV+YNF+RW+P
Sbjct: 109 FDSSSAKVWIYPTNYPIREYQLKMSEVALFQNTLVCLPTGLGKTFIASVVMYNFYRWYPS 168
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GKIVF AP++PLV QQIEAC+ ++GIPQ ++TG +R W+ KRVFF+TPQV
Sbjct: 169 GKIVFMAPTKPLVAQQIEACYKVMGIPQAHMAELTGSTGAKQRQEIWRAKRVFFLTPQV- 227
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
C+VIDEAH+A GN+AYC IR+L S +Q R+LALTATPG ++
Sbjct: 228 --------------KCVVIDEAHKALGNHAYCQVIRQLCSQMLQFRVLALTATPGGDAKS 273
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+Q ++ NL IS +E R++ D+ +Y H R +E + V +G+ R +V+ +TSR
Sbjct: 274 VQSVVSNLLISHIELRSDESPDIRAYSHQRSVEKVVVPLGEILSAHQARYLQVLEKFTSR 333
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L ++ ++D +TLS L+ +RD+FR+ P P++ + G +E F I+LYH LL
Sbjct: 334 LVQSRVMAHKDLRTLSKYQLILARDQFRKNPLPHIKGPQQGVLEGDFALCISLYHGYELL 393
Query: 394 SSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQ-------QSISHGAQS----- 441
G+R + + + + GS ++NE +++ + M + A+S
Sbjct: 394 MQMGLRSLF-LYFQGIMDGSREMSRARNE-LQRTPVFMDLYQEMEAMFVKQSAESDEPFI 451
Query: 442 ---PKLSKMLEVLVDHFKTKDPK---HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFI 495
PKL K+ +V++ HF+ + +RV+IFS+FR SV++I L L++ F+
Sbjct: 452 YSHPKLQKLEDVVLQHFRLRAGSSEVSTRVMIFSSFRESVQEIAAMLNRHAPLIRVMTFM 511
Query: 496 GQ-SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
GQ S+GK KG +QK Q V+ +FR GG+N +V+T +GEEGLDI EVDL++CFDA +P
Sbjct: 512 GQASAGKGVKGFTQKEQLEVVHRFRQGGFNTLVSTCVGEEGLDIGEVDLIVCFDAQKNPT 571
Query: 555 RMIQRMGRTGRKHDGRI 571
R++QRMGRTGRK GRI
Sbjct: 572 RLVQRMGRTGRKRQGRI 588
>gi|340914608|gb|EGS17949.1| ATP-dependent DNA helicase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 1200
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 235/545 (43%), Positives = 340/545 (62%), Gaps = 26/545 (4%)
Query: 87 ESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY 145
E H +++ W+YP+N+ P+RDYQF+I K ALF NTLVALPTGLGKT IAA V+
Sbjct: 200 EPPTHHKLNESELGKWVYPLNLGPIRDYQFSIVKNALFHNTLVALPTGLGKTFIAATVML 259
Query: 146 NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205
NFFRW D KIVFAAP++PLV QQ+EAC N+ GIP+ T +TG+ SP+ R W+TKR+
Sbjct: 260 NFFRWTKDAKIVFAAPTKPLVSQQVEACLNVAGIPRSQTTLLTGETSPSLRREEWETKRL 319
Query: 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTA 265
FF+TPQ L D+ G+ K +V LVIDEAHRATG+YAY I + R+LALTA
Sbjct: 320 FFMTPQTLMNDLSIGSADPKSIVLLVIDEAHRATGDYAYVKVIEFMRRFNKSFRVLALTA 379
Query: 266 TPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE 325
TPGS + +Q +IDNL IS +E R E D+ YVH+R IE + + E E+ + +
Sbjct: 380 TPGSTVEGVQEVIDNLCISHVEIRTEESIDIRQYVHSRNIETVTFDPSDEMEEVKSLFSK 439
Query: 326 VIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYFGALI 384
++P +LS+ + RD +L+ LL SR+++ P + Q +KF + + FG L
Sbjct: 440 ALKPLVDKLSSQNIYYGRDPMSLTTYGLLKSRNEWLAGPGRHANQGLKF-MIMSVFGILQ 498
Query: 385 TLYHIRRLLSSHGIRPAYEML-------EEKLKQGS-FARFMSKNEDIRKVKLLMQQSIS 436
++ H +LL+ HGI+P Y + E K ++GS R + +E +K+ ++++ +
Sbjct: 499 SVAHSIKLLNFHGIKPFYYAMAEFRSTEEAKGERGSKLKRQLLNDESFQKMMTMIEKWMK 558
Query: 437 ----HGAQSPKLSKMLEVLVDHFK-TKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKA 491
HG PKL+ + +VLV+HF + ++R I+F+ +R S +I+ L T +V A
Sbjct: 559 LKDFHG--HPKLTYLCQVLVNHFADAGEGSNTRAIVFAEYRDSAEEIVRLLNT-QPMVSA 615
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
T F+GQ+ K S+G QK Q +EKF++G +NV+VATSIGEEGLDI +VDL+IC+DA+
Sbjct: 616 TVFVGQADSKRSEGMKQKQQIETIEKFKSGQFNVLVATSIGEEGLDIGQVDLIICYDASS 675
Query: 552 SPLRMIQRMGRTGRKHDGRIPHIF---KPEVQFVELSIEQYVSRGKKVKDDHAITTPIFK 608
SP+RM+QRMGRTGRK G I + K E +F E + + Y + + D + T F+
Sbjct: 676 SPIRMLQRMGRTGRKRAGNIVLLLMKGKEEEKFAE-AKDNYQKMQQLICDGASFT---FR 731
Query: 609 EKLTA 613
+L+A
Sbjct: 732 HELSA 736
>gi|380489822|emb|CCF36443.1| type III restriction enzyme, partial [Colletotrichum higginsianum]
Length = 1024
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 246/615 (40%), Positives = 344/615 (55%), Gaps = 48/615 (7%)
Query: 55 STCKQSTLDKFFGNLG------PKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNV 108
ST +Q+TL G + P G G E+ I+ EA KTW+YP N+
Sbjct: 56 STFRQTTL--LGGRVADDASVQPSQPGFGRVYRGDRPAEAPSQHAINREAMKTWLYPTNL 113
Query: 109 -PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167
RDYQF+I K LF+NTLVALPTGLGKT IAA V+ N++RW D KIVF AP++PLV
Sbjct: 114 GATRDYQFSIVKNGLFNNTLVALPTGLGKTFIAATVMLNYYRWTKDAKIVFVAPTKPLVA 173
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYL 227
QQ++AC NIVGIP+ T +TG +P R W +KRVFF+TPQ L+ DI G K +
Sbjct: 174 QQVDACFNIVGIPRSETTLLTGDTAPALRVDEWSSKRVFFMTPQTLQNDISHGYADPKSI 233
Query: 228 VCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLE 287
V LVIDEAHRATG YAY ++++ R+LALTATPGSK +T+Q IIDNL IS +E
Sbjct: 234 VLLVIDEAHRATGEYAYAKVVKKIRQFNPYFRLLALTATPGSKIETVQEIIDNLGISHIE 293
Query: 288 YRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQT 347
R E D+ YVH R +E + ++ E EI + + ++P +L+ + RD
Sbjct: 294 IRTEDSIDIRQYVHQRNVEQVVLDPSDEMCEIKDLFSKALKPLMDKLTQQNIYYGRDPMA 353
Query: 348 LSPVDLL-NSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLE 406
++ L+ +D F P ++F + A F L +L H +LL+ HGIRP YE L+
Sbjct: 354 ITTYGLVKQQQDWFASVGRKTNPGVQF-MMRAIFSILQSLAHAIKLLNFHGIRPFYENLK 412
Query: 407 E-------------KLKQ-----GSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKML 448
E K K+ SF M+K E L + + H PKL+ +
Sbjct: 413 EFRSETEDRGDKGSKYKKQIVNDKSFQEMMTKVEKW----LRTEGFVGH----PKLAALQ 464
Query: 449 EVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQ 508
+ +++HF +R+I+FS +R S DI+ L L+KAT F+GQ+ K S G Q
Sbjct: 465 DTVLNHFMDAGQTSTRIIVFSEYRDSAEDIVRVLNVHKPLIKATVFVGQADSKRSAGMKQ 524
Query: 509 KVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD 568
Q A ++KF+ G YNV+VATSIGEEGLDI +VDL++C+DA+ SP+RM+QRMGRTGRK
Sbjct: 525 SEQIATIQKFKDGEYNVLVATSIGEEGLDIGQVDLIVCYDASSSPIRMLQRMGRTGRKRA 584
Query: 569 GRIPHIF---KPEVQFVE-----LSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIA 620
G I + K E F +++ + G K H ++T I + +++
Sbjct: 585 GNIVLLLMRGKEEDAFARSKDNYAEMQKLICEGSKFNFRHDLSTRIVPRDI---RPEVVM 641
Query: 621 KYFHPTSDSTWRPSL 635
++ ++T PSL
Sbjct: 642 QHIEIPIENTQNPSL 656
>gi|403277963|ref|XP_003930609.1| PREDICTED: Fanconi anemia group M protein isoform 2 [Saimiri
boliviensis boliviensis]
Length = 2021
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/505 (42%), Positives = 296/505 (58%), Gaps = 57/505 (11%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLNISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAQMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC Q +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYC--------------------------QAVQQV 232
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y H RK+E + V +G+E V I +++ + L
Sbjct: 233 ITNLLIGQIELRSEDSPDILAYSHERKVEKLIVPLGEELVAIQKTYIQILEAFAHSLIQR 292
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 293 NVLMRRDISNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 352
Query: 398 IRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS------------ 441
+R Y L + K + ++ +S+NED K+ ++ +H +
Sbjct: 353 MRSLYFFLCGIMDGTKGMTRSKNELSRNEDFMKLYKHLEGMFAHTRSTSANGISAIQQGD 412
Query: 442 -------PKLSKMLEVLVDHFK------TKDPKH--SRVIIFSNFRGSVRDIMNALATIG 486
PKL K+ EV+++HFK T KH +RV+IFS+FR SV++I L+
Sbjct: 413 KKFVYGHPKLKKLEEVVIEHFKSWNAENTSGKKHDETRVMIFSSFRDSVQEIAEMLSQHQ 472
Query: 487 DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL+IC
Sbjct: 473 PTIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIIC 532
Query: 547 FDANVSPLRMIQRMGRTGRKHDGRI 571
FD+ SP+R++QRMGRTGRK GRI
Sbjct: 533 FDSQKSPIRLVQRMGRTGRKRQGRI 557
>gi|443700613|gb|ELT99493.1| hypothetical protein CAPTEDRAFT_222339 [Capitella teleta]
Length = 1565
Score = 421 bits (1083), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/493 (43%), Positives = 300/493 (60%), Gaps = 44/493 (8%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D +A +TWIYP N VRDYQF+I + ALF NT+V LPTGLGKT +AAVV+YNF+ W+P
Sbjct: 94 FDVDAGQTWIYPTNYSVRDYQFSIVEQALFKNTMVVLPTGLGKTFVAAVVMYNFYLWYPQ 153
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GKIVF AP++PLV QQIEAC+N++GIPQ +MTG + P +R W+ KR+FF+TPQV+
Sbjct: 154 GKIVFMAPTKPLVAQQIEACYNVMGIPQSDMAEMTGAMQPKERVKMWRLKRIFFLTPQVM 213
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
D+ G C + CLV+DEAH+A GN+AYC + EL V V R+LAL+ATPGS +
Sbjct: 214 TNDLGRGACPSAQIKCLVVDEAHKALGNHAYCQVVSELSKVSVHFRVLALSATPGSDIKA 273
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+Q ++ +L IS +E R+E +D+ Y H R +E I V +R
Sbjct: 274 VQQVLKSLLISHIELRSEESEDIQKYSHERSVEKIVVVEVV----------------VNR 317
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L G+L NR +LS L +R++FRQ PPP L + FG +E F ++LYH LL
Sbjct: 318 LKRHGVLYNRPASSLSKFMFLKAREEFRQNPPPTLNPVNFGSIEGDFALGMSLYHGYELL 377
Query: 394 SSHGIRPAYEMLE--------------EKLKQGSFARFM----SKNEDIRKVKLLMQQSI 435
HG+R + ++ E ++ F + M +K + I+ + Q
Sbjct: 378 QHHGLRSLHCFMQSLISGEKGNGRTRAELMRNQDFCQLMQELDAKFDPIKSAGPYLSQMT 437
Query: 436 SHGAQS-------PKLSKMLEVLVDHFKT--KDPKHSRVIIFSNFRGSVRDIMNALATIG 486
+ +Q PK+SK+ EV+++HF + + + +R++IFS +R SV +I L
Sbjct: 438 LNASQKKEFVAGHPKMSKLEEVVLEHFHSLEEQEQQTRIMIFSQYRDSVNEITQMLNQHR 497
Query: 487 DLVKATEFIGQSSG-KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
LVKA FIGQSS K S+G +QK Q V+ FR GGYN +++T +GEEGLDI +VDL+I
Sbjct: 498 PLVKAMSFIGQSSAKKTSRGFTQKEQLKVMRAFREGGYNTLISTCVGEEGLDIGDVDLII 557
Query: 546 CFDANVSPLRMIQ 558
CFDA+ SP+R++Q
Sbjct: 558 CFDAHKSPIRLVQ 570
>gi|390356128|ref|XP_003728711.1| PREDICTED: uncharacterized protein LOC587521 [Strongylocentrotus
purpuratus]
Length = 1822
Score = 421 bits (1082), Expect = e-114, Method: Compositional matrix adjust.
Identities = 217/547 (39%), Positives = 313/547 (57%), Gaps = 69/547 (12%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D +IYP+N P+RDYQF I + ALF NTLV LPTGLGKT IAAVV+YNF+RW+P
Sbjct: 193 FDVSTGNIYIYPINYPLRDYQFNIVRQALFKNTLVTLPTGLGKTFIAAVVMYNFYRWYPR 252
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GKIVF AP++PLV QQIEAC NI+GIPQE ++MTG + P +R W+ +RVFF+TPQV+
Sbjct: 253 GKIVFMAPTKPLVFQQIEACFNIMGIPQEDMVEMTGNMHPPERKKSWQVQRVFFLTPQVM 312
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
D+ C + C+++DEAH+A GN+AYC +REL Q R+LAL+ATPG +
Sbjct: 313 TNDLSRRACPATDVKCVIVDEAHKALGNHAYCQVVRELSKYTSQFRVLALSATPGGDIKA 372
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+ ++ NL IS +E R+E D+ YVH RK+E I V +G E ++ + ++I+ + +R
Sbjct: 373 VNQVLSNLLISHIEIRSEDSIDIKQYVHERKVEKIVVPLGDELKQVKEQYLQIIKVFVNR 432
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEA--------YFGALIT 385
L L RD +TLS +L SR+ FRQ PPP + + G +E Y G +
Sbjct: 433 LVRCRALFCRDPETLSKFQILKSREAFRQDPPPEITAARRGPIEGDFAICMSLYHGFELL 492
Query: 386 LYHIRRLLSSH------GIRPAYEMLEEKLKQGSFARFM--------------------- 418
L H +R L S G + E ++ F+ +
Sbjct: 493 LQHGQRSLYSFLLGTIDGSKGNARKRSELMRNADFSNLIETLEAKYAGSMNTSHNTSHNT 552
Query: 419 ----------------SKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462
S+ + + ++ + + PK++K+ EV+++HF+ H
Sbjct: 553 SSHNSSGLFTSMSSPSSRATGSKGIGGCKEEVEEYVSSHPKITKLKEVVLEHFEKFTSDH 612
Query: 463 -----------------SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSS-GKASK 504
+RV+IF+ +R SV++I + L V+ FIGQ+S GK +K
Sbjct: 613 KAEEGPSTSSKAPSRPSTRVMIFAQYRDSVQEITHMLNRHRPAVRCMSFIGQASAGKNTK 672
Query: 505 GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTG 564
G SQK Q V+ +F+ GGYN +V+T +GEEGLDI +VDL++CFDA+ SP+R++QRMGRTG
Sbjct: 673 GFSQKEQIRVVSEFKNGGYNTLVSTCVGEEGLDIGDVDLIVCFDAHKSPIRLVQRMGRTG 732
Query: 565 RKHDGRI 571
RK +GRI
Sbjct: 733 RKREGRI 739
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 111/182 (60%)
Query: 187 MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCT 246
M G + P +R W+ +RVFF+TPQV+ D+ C + C+++DEAH+A GN+AYC
Sbjct: 1 MAGNMHPPERKKSWQLQRVFFLTPQVMTNDLSRRACPATDVKCVIVDEAHKALGNHAYCQ 60
Query: 247 AIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIE 306
+REL Q R+LAL+ATPG + + ++ NL IS +E R+E D+ YVH RK+E
Sbjct: 61 VVRELSKYTSQFRVLALSATPGGDIKAVNQVLSNLLISHIEIRSEDSIDIKQYVHERKVE 120
Query: 307 LIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP 366
I V +G E ++ + ++I+ + +RL L RD +TLS +L SR+ FRQ PPP
Sbjct: 121 KIVVPLGDELKQVKEQYLQIIKVFVNRLVRCRALFCRDPETLSKFQILKSREAFRQDPPP 180
Query: 367 NL 368
+
Sbjct: 181 EI 182
>gi|310793920|gb|EFQ29381.1| type III restriction enzyme [Glomerella graminicola M1.001]
Length = 1113
Score = 421 bits (1082), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/521 (43%), Positives = 308/521 (59%), Gaps = 29/521 (5%)
Query: 71 PKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVA 129
P G G +E+ ID E KTW+YP N+ RDYQF+I K LF+NTLVA
Sbjct: 142 PSQPGFGRVYRGDKPEEAPSQHAIDREEMKTWLYPTNLGATRDYQFSIVKNGLFNNTLVA 201
Query: 130 LPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTG 189
LPTGLGKT IAA ++ N++RW D KIVF AP++PLV QQ++AC NIVGIP+ T +TG
Sbjct: 202 LPTGLGKTFIAATIMLNYYRWTKDAKIVFVAPTKPLVAQQVDACFNIVGIPRSETTLLTG 261
Query: 190 QISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIR 249
+P R + W +KRVFF+TPQ L+ DI G K +V LVIDEAHRATG YAY ++
Sbjct: 262 DTAPALRVNEWSSKRVFFMTPQTLQNDISHGYADPKSIVLLVIDEAHRATGEYAYAKVVK 321
Query: 250 ELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIE 309
+ R+LALTATPGSK +T+Q IIDNL IS +E R E D+ YVH R +E +
Sbjct: 322 RIRQYNSYFRLLALTATPGSKIETVQEIIDNLGISHIEIRTEDSIDIRQYVHQRNVEQVV 381
Query: 310 VEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDK-FRQAPPPNL 368
++ E EI + + ++P +L+ + RD ++ L+ + + F
Sbjct: 382 LDPSDEMCEIKDLFSKALKPLMDKLTQQNIYFGRDPMAITTYGLVKQQQEWFATVGRKTN 441
Query: 369 PQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEE-------------KLKQ---- 411
P ++F + A F L +L H +LL+ HGIRP YE L+E K K+
Sbjct: 442 PGMQF-MMRAIFSILQSLAHAIKLLNFHGIRPFYENLKEFRGGVEDMGEKGSKYKKQIVN 500
Query: 412 -GSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSN 470
SF M++ E L + + H PKL+ + + +++HF +R+I+FS
Sbjct: 501 DQSFQEMMTRVEKW----LRTEGFVGH----PKLAALQDTVLNHFMDAGATSTRIIVFSE 552
Query: 471 FRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATS 530
+R S DI+ L L+KAT F+GQ+ K S G Q Q A ++KF+ G YNV+VATS
Sbjct: 553 YRDSAEDIVRVLNVHKPLIKATVFVGQADSKRSAGMKQSEQIATIQKFKDGEYNVLVATS 612
Query: 531 IGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
IGEEGLDI +VDL++C+DA+ SP+RM+QRMGRTGRK G I
Sbjct: 613 IGEEGLDIGQVDLIVCYDASSSPIRMLQRMGRTGRKRAGNI 653
>gi|165972365|ref|NP_001107132.1| Fanconi anemia, complementation group M [Danio rerio]
gi|126843130|gb|ABO27624.1| Fanconi anemia M [Danio rerio]
Length = 1761
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/502 (43%), Positives = 311/502 (61%), Gaps = 42/502 (8%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D A + WIYP N+P+R+YQ + + AL NTLV LPTGLGKT IA+V++YN++RWFP
Sbjct: 61 FDYSAGRVWIYPTNLPLREYQLRVCEAALLQNTLVCLPTGLGKTFIASVLMYNYYRWFPA 120
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GKIVF AP++PLV QQIEAC+ ++GIPQE T ++TG + +R S W ++RVFF+TP
Sbjct: 121 GKIVFMAPTKPLVAQQIEACYRVMGIPQEHTAELTGSTAAPQRRSLWSSRRVFFLTPPDR 180
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
C+VIDEAH+ATGN+AYC IREL Q R+LAL+ATPG +
Sbjct: 181 ---------------CVVIDEAHKATGNHAYCQVIRELRKQTPQFRVLALSATPGGDVKA 225
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+Q +I NL IS +E R+E DV ++VH R +E + V +G+ R +V+ ++SR
Sbjct: 226 VQQVISNLLISHIELRSEDSPDVQTHVHQRSLEKMVVPLGESLTHYQTRYLQVLERFSSR 285
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNL--PQIKFGEVEAYFGALITLYHIRR 391
L+ + LL RD + S ++ +R++FR+ PPP++ PQ + G +E F LI+LYH
Sbjct: 286 LTQMRLLNQRDLRAFSKYQIILAREQFRRNPPPHIQGPQQQ-GVLEGDFALLISLYHGFE 344
Query: 392 LLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQ---------QSISHGAQS- 441
LL GIR + + + + G +NE +++ L M + S G +
Sbjct: 345 LLLQMGIRSLF-LFIQNIFTGPRESSRVRNE-LQRCSLFMDLYREMENMFNTASRGLEEP 402
Query: 442 -----PKLSKMLEVLVDHFKT------KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK 490
PKL K+ EV++ HF+T +RV+IFS++R SV++I L LV+
Sbjct: 403 YVYTHPKLQKLDEVVLRHFQTCAESSDVSAVDTRVMIFSSYRESVQEIAEMLNRHQPLVR 462
Query: 491 ATEFIGQ-SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA 549
F+GQ S+G+ +G +QK Q V+ +FR GG+N +V+T +GEEGLDI EVDL++CFDA
Sbjct: 463 VMTFMGQASAGRGVRGFTQKEQLEVVWRFREGGFNTLVSTCVGEEGLDIGEVDLIVCFDA 522
Query: 550 NVSPLRMIQRMGRTGRKHDGRI 571
SP+R++QRMGRTGR+ GRI
Sbjct: 523 QKSPIRLVQRMGRTGRQRQGRI 544
>gi|359077950|ref|XP_003587635.1| PREDICTED: Fanconi anemia group M protein [Bos taurus]
Length = 2011
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/507 (42%), Positives = 294/507 (57%), Gaps = 59/507 (11%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I +TALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 85 AGALWIYPTNCPVRDYQLHIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 144
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 145 FMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGSTQAFTRKEIWSSKRVLFLTPQVMVNDL 204
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC Q +Q +
Sbjct: 205 SRGACPAAEIKCLVIDEAHKALGNYAYC--------------------------QAVQQV 238
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 239 ITNLLIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELEAIQKAYIQILEAFASSLIQR 298
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L +D L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 299 NVLMRKDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 358
Query: 398 IRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS------------ 441
+R Y L + K + A+ +S+N D K+ + SH +
Sbjct: 359 MRSLYFFLCGIMDGTKGMTRAKNELSRNADFMKLYDHLDSMFSHTRSTSTSGVSAIQKGG 418
Query: 442 ---------PKLSKMLEVLVDHF------KTKDPK--HSRVIIFSNFRGSVRDIMNALAT 484
PKL K+ EV+V+HF KT D K +RV+IFS+FR SV++I L
Sbjct: 419 KDKKFCYSHPKLKKLEEVVVEHFKSWNARKTSDKKCDETRVMIFSSFRDSVQEIAEMLLP 478
Query: 485 IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
+++ F+G +SGK+ KG +QK Q V+++FR+GGYN +V+T +GEEGLDI EVDL+
Sbjct: 479 HQPIIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLI 538
Query: 545 ICFDANVSPLRMIQRMGRTGRKHDGRI 571
ICFDA SP+R+IQRMGRTGRK GRI
Sbjct: 539 ICFDAQKSPIRLIQRMGRTGRKRQGRI 565
>gi|354503753|ref|XP_003513945.1| PREDICTED: Fanconi anemia group M protein homolog, partial
[Cricetulus griseus]
Length = 1914
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/488 (43%), Positives = 296/488 (60%), Gaps = 33/488 (6%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
IYP N PVRDYQ I++TALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+VF AP+
Sbjct: 1 IYPTNCPVRDYQLHISRTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPT 60
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV QQ+EAC +++GIPQ +MTG R W +KRV F+TPQV+ D+ C
Sbjct: 61 KPLVTQQMEACFHVMGIPQSHMAEMTGSTQAVSRKDIWCSKRVLFLTPQVMVNDLTREAC 120
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
+ CLV+DEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +I NL
Sbjct: 121 PAARIKCLVVDEAHKALGNYAYCQVVRELVKYTTHFRILALSATPGSDIKAVQQVITNLL 180
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I +E R+E D+ Y H R++E + V +G+E I +++ + S L +L
Sbjct: 181 IGKIELRSEDSPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASPLIQRNVLMK 240
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAY 402
RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G+R Y
Sbjct: 241 RDIPNLTKYQVILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMGMRSLY 300
Query: 403 EMLE---EKLKQGSFARF-MSKNEDIRKVKLLMQQSISH--------------GAQS--- 441
L + K + AR + +NED K+ ++ +H G +
Sbjct: 301 FFLSGIMDGTKGMTRARNELGRNEDFMKLYNHLESVFAHVRDPSAIDASAFKKGNKEKNF 360
Query: 442 ----PKLSKMLEVLVDHFKTKDPKH--------SRVIIFSNFRGSVRDIMNALATIGDLV 489
PKL K+ EV+++HF++ + K+ +RV+IFS+FR SV +I L ++
Sbjct: 361 FYSHPKLKKLEEVIIEHFRSWNAKNTTGKKCLETRVMIFSSFRDSVEEIAEMLLQHQPVI 420
Query: 490 KATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA 549
+ F+G +SGK +KG +QK Q V+ +FR GGYN +V+T +GEEGLDI EVDL+ICFDA
Sbjct: 421 RVMTFVGHASGKNTKGFTQKEQLEVVRQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDA 480
Query: 550 NVSPLRMI 557
SP+R+I
Sbjct: 481 QKSPIRLI 488
>gi|332229234|ref|XP_003263796.1| PREDICTED: Fanconi anemia group M protein isoform 2 [Nomascus
leucogenys]
Length = 2024
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/512 (41%), Positives = 294/512 (57%), Gaps = 61/512 (11%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLQISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC Q +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYC--------------------------QAVQQV 232
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y H RK+E + V +G+E I +++ + L
Sbjct: 233 ITNLLIGQIELRSEDSPDILAYSHERKVEKLIVPLGEELAAIQKTYIQILESFAHSLIQR 292
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 293 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 352
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQQSISHGAQS----------- 441
+R Y L + G+ SK NED K+ ++ +H +
Sbjct: 353 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFAHTRSTSANGISAIQQG 411
Query: 442 ----------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 412 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTSEKKRDETRVMIFSSFRDSVQEIAEMLS 471
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL
Sbjct: 472 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDL 531
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
+ICFD+ SP+R++QRMGRTGRK GRI I
Sbjct: 532 IICFDSQKSPIRLVQRMGRTGRKRQGRIVVIL 563
>gi|187954507|gb|AAI40777.1| FANCM protein [Homo sapiens]
gi|219518301|gb|AAI44512.1| FANCM protein [Homo sapiens]
Length = 2022
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/508 (42%), Positives = 296/508 (58%), Gaps = 61/508 (12%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG + R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC Q +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYC--------------------------QAVQQV 232
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y H RK+E + V +G+E I +++ + L
Sbjct: 233 ITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQR 292
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 293 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 352
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQ--------------QSISHG 438
+R Y L + G+ SK NED K+ ++ +I G
Sbjct: 353 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFARTRSTSANGISAIQQG 411
Query: 439 AQS-------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
++ PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 412 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLS 471
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL
Sbjct: 472 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDL 531
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ICFD+ SP+R++QRMGRTGRK GRI
Sbjct: 532 IICFDSQKSPIRLVQRMGRTGRKRQGRI 559
>gi|440481037|gb|ELQ61664.1| helicase C-terminal domain protein [Magnaporthe oryzae P131]
Length = 1102
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 227/539 (42%), Positives = 326/539 (60%), Gaps = 18/539 (3%)
Query: 50 ANKKPSTCKQSTLDKFFGNLGPKPQGTEEFNEGSSFDESL-----CHVQIDAEAAKTWIY 104
A + T +Q+TL + P+P GT+ N F L H +D EA KTW+Y
Sbjct: 75 ARNQARTFQQTTLLGRIASQAPEPLGTQPRN-SRVFRADLPPEVPTHHALDPEALKTWVY 133
Query: 105 PVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163
P N+ P+RDYQF+I K LF+NTLVALPTGLGKT IAA VI NFFRW + ++VF AP++
Sbjct: 134 PTNLGPIRDYQFSIVKNGLFNNTLVALPTGLGKTFIAATVILNFFRWTRNAQMVFVAPTK 193
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL 223
PL QQ+EAC NI GIP+ + +TG+ P R + W+ KR+FF+TPQ L D+ G
Sbjct: 194 PLASQQVEACLNIAGIPRSQSTLLTGETKPVLREAEWEGKRLFFMTPQTLMNDLSKGYAD 253
Query: 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYI 283
K +V LV+DEAHRATG+YAY I + R+LALTATPGS + +Q +IDNL +
Sbjct: 254 PKRIVLLVVDEAHRATGDYAYVKVIEFIRRFSKSFRVLALTATPGSTVEGVQDVIDNLGV 313
Query: 284 STLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNR 343
S +E R E D+ +YVH+R+I+ + +E E + I+ + ++P S++S + R
Sbjct: 314 SHVEIRTEESIDIRNYVHSREIDRVVLEPSDEMLRISELFSQALKPLHSKISQQKIYIGR 373
Query: 344 DYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYE 403
D +++ LL +R + + P Q + A F L +L H +LL+ HGIRP Y+
Sbjct: 374 DPMSITTFGLLKARQDWMKGPGRFANQGLKMMLMAIFTILQSLAHAIKLLNYHGIRPFYD 433
Query: 404 ML-------EEKLKQGS-FARFMSKNEDIRKVKLLMQQ--SISHGAQSPKLSKMLEVLVD 453
L E+K ++GS + R + + +++ L + I A PKL+ + + L++
Sbjct: 434 NLVAFRSETEDKGQKGSKYKRQLIGEQSFQEMMDLASKWLKIDGFAGHPKLTHLCDNLLN 493
Query: 454 HF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQ 512
HF + +RVI+FS +R S +I L ++ A+ F+GQ+ K S+G QK Q
Sbjct: 494 HFMDAGEGSSTRVIVFSEYRDSAEEITRVLNVHKPMISASLFVGQADSKKSEGMKQKQQI 553
Query: 513 AVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ KFR G +NV+VATSIGEEGLDI +VDL+IC+DA+ SP+RM+QRMGRTGRK G+I
Sbjct: 554 ETIAKFRDGIFNVLVATSIGEEGLDIGQVDLIICYDASSSPIRMLQRMGRTGRKRAGKI 612
>gi|426376789|ref|XP_004055168.1| PREDICTED: Fanconi anemia group M protein isoform 2 [Gorilla
gorilla gorilla]
Length = 2022
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/508 (42%), Positives = 295/508 (58%), Gaps = 61/508 (12%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC Q +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYC--------------------------QAVQQV 232
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y H RK+E + V +G+E I +++ + L
Sbjct: 233 ITNLLIGQIELRSEDSPDILAYSHERKVEKLIVPLGEELAAIQKTYIQILESFAHSLIQR 292
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 293 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 352
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQ--------------QSISHG 438
+R Y L + G+ SK NED K+ ++ +I G
Sbjct: 353 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNYLECMFARTRSTSANGISAIQQG 411
Query: 439 AQS-------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
++ PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 412 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLS 471
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL
Sbjct: 472 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDL 531
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ICFD+ SP+R++QRMGRTGRK GRI
Sbjct: 532 IICFDSQKSPIRLVQRMGRTGRKRQGRI 559
>gi|367043588|ref|XP_003652174.1| hypothetical protein THITE_36500 [Thielavia terrestris NRRL 8126]
gi|346999436|gb|AEO65838.1| hypothetical protein THITE_36500 [Thielavia terrestris NRRL 8126]
Length = 1101
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 236/579 (40%), Positives = 336/579 (58%), Gaps = 28/579 (4%)
Query: 54 PSTCKQSTLDKFFGNLGPKPQGTEEFNEGSSFDESL-----CHVQIDAEAAKTWIYPVNV 108
P + +Q+TL + G + P+ + F L H ++D TW+YP+N+
Sbjct: 101 PQSFRQTTL--WGGTVREHPEAASQTAPRRPFRVDLPPEPPTHHELDQRELSTWVYPLNL 158
Query: 109 -PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167
P+RDYQF+I K ALF+NTLVALPTGLGKT IAA V+ N++RW KIVF AP++PL
Sbjct: 159 GPIRDYQFSIVKNALFNNTLVALPTGLGKTFIAATVMLNYYRWTKRAKIVFVAPTKPLAS 218
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYL 227
QQ++AC N+ GIP+ +TG+ P R W TKR+FF+TPQ L D+ G K +
Sbjct: 219 QQVQACLNVAGIPRSQATLLTGETPPGLREEEWGTKRLFFMTPQTLMNDLSKGYADPKSI 278
Query: 228 VCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLE 287
V LVIDEAHRATG+YAY + + R+LALTATPGS + +Q IIDNL IS +E
Sbjct: 279 VLLVIDEAHRATGDYAYVKVVEFIRRFSKSFRVLALTATPGSTVEGVQDIIDNLGISHVE 338
Query: 288 YRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQT 347
R E D+ YVH+R I+ + + E EI N + ++P +LS+ + +D +
Sbjct: 339 IRTEESIDIRQYVHSRNIDTVTFDPSDEMDEIRNLFSKALKPLVDKLSSQNIYYGKDPMS 398
Query: 348 LSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEE 407
L+ LL SR + P ++ Q + A F L +L H +LL+ HGIRP Y L E
Sbjct: 399 LTTYGLLKSRQDWLAGPGRHVNQGTKFMMMAVFSILQSLAHSIKLLNFHGIRPFYNSLAE 458
Query: 408 -------KLKQGS-FARFMSKNEDIRKVKLLMQQ--SISHGAQSPKLSKMLEVLVDHFK- 456
K QGS R + +E+ +K+ L+++ + PKL+ + E LV+HF
Sbjct: 459 FRATEEGKPGQGSKLKRQLLADENFQKMMSLIERWMKVQGFNGHPKLTYLCETLVNHFAD 518
Query: 457 TKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLE 516
D ++R I+FS +R S +I+ L T L+ AT F+GQ+ K S G QK Q +E
Sbjct: 519 AGDGSNTRAIVFSEYRDSAEEIVRLLNT-QPLISATVFVGQADSKRSGGMKQKQQIETIE 577
Query: 517 KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIF- 575
KF++G +NV+VATSIGEEGLDI +VDL++C+DA+ SP+RM+QRMGRTGRK G I +
Sbjct: 578 KFKSGAFNVLVATSIGEEGLDIGQVDLIVCYDASASPIRMLQRMGRTGRKRAGNIVLLLM 637
Query: 576 --KPEVQFVEL-----SIEQYVSRGKKVKDDHAITTPIF 607
K E +F++ ++Q + G H ++T I
Sbjct: 638 KGKEEEKFMDAKDNYQKMQQLICDGDSFSFRHDLSTRII 676
>gi|429860114|gb|ELA34863.1| helicase c-terminal domain-containing protein [Colletotrichum
gloeosporioides Nara gc5]
Length = 1046
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 256/677 (37%), Positives = 369/677 (54%), Gaps = 59/677 (8%)
Query: 82 GSSFDESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIA 140
G E H +D EA KTW+YP N+ RDYQF+I K LF+NTLVALPTGLGKT IA
Sbjct: 159 GDKPQEPPAHHALDREAMKTWLYPTNLGATRDYQFSIVKNGLFNNTLVALPTGLGKTFIA 218
Query: 141 AVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW 200
A V+ N+FRW D KIVF AP++PLV QQ++AC NI GI + T +TG +P R W
Sbjct: 219 ATVMLNYFRWTKDVKIVFVAPTKPLVAQQVDACFNIAGIARSETTLLTGDTAPALRVDEW 278
Query: 201 KTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRI 260
++KRVFF+TPQ L D+ G K +V LVIDEAHRATG YAY ++ + R+
Sbjct: 279 QSKRVFFMTPQTLVNDLSHGYADPKSIVLLVIDEAHRATGEYAYAKVVKLMRRFNPYFRV 338
Query: 261 LALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEIN 320
LALTATPGSK +T+Q IIDNL IS +E R E D+ YVH R +E + ++ E EI
Sbjct: 339 LALTATPGSKVETVQEIIDNLGISHIEIRTEESIDIRQYVHQRNVEQVLLDPSDEMCEIK 398
Query: 321 NRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLL-NSRDKFRQAPPPNLPQIKFGEVEAY 379
+ + ++P +L+ + RD +++ L+ +D F P ++ G + +
Sbjct: 399 DLFTKALKPLMDKLTQQNIYYGRDPMSITAYGLMQQQKDWFANVGRRANPGLQ-GMMRSV 457
Query: 380 FGALITLYHIRRLLSSHGIRPAYEML-------EEKLKQGS-FARFMSKNEDIRKVKLLM 431
F L +L H +LL+ HG+RP YE L EEK +GS + + + ++E +++ M
Sbjct: 458 FSILQSLAHTIKLLNFHGVRPFYENLNEFRSEVEEKGAKGSKYKKQILESEHFQEMMSNM 517
Query: 432 QQ--SISHGAQSPKLSKMLEVLVDHFKTKDPKH-SRVIIFSNFRGSVRDIMNALATIGDL 488
++ I A PKL+++ + +++HF +RVI+FS +R S DI+ L L
Sbjct: 518 EKWLRIDGFASHPKLTELQDRILNHFMDNGGNSATRVIVFSEYRDSAEDIVQVLNRHKPL 577
Query: 489 VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD 548
+KAT F+GQ+ K S G Q Q +EKF+ G YNV+VATSIGEEGLDI +VDL++C+D
Sbjct: 578 IKATVFVGQADSKRSAGMKQAEQIETIEKFKDGKYNVLVATSIGEEGLDIGQVDLIVCYD 637
Query: 549 ANVSPLRMIQRMGRTGRKHDGRIPHIF---KPEVQFVE-----LSIEQYVSRGKK----- 595
A+ SP+RM+QRMGRTGRK G I + K E F +++ +S G K
Sbjct: 638 ASSSPIRMLQRMGRTGRKRAGNIILLLMRGKEEEAFARSKDNYAEMQKIISDGSKFNFHF 697
Query: 596 -----------------------VKDDHAITTPIFKEKLTAAETDLIAKYFHPTS---DS 629
V+D ++ + + + AE D I + ++ +
Sbjct: 698 GKPTAGAKRGRPPKQPEPTEADFVEDVPSLNSVVLTD-TQLAELDRIYRSLPASTTKIEE 756
Query: 630 TWRPSLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHL--QGLTFSRDDRTFVEDEVSSD 687
P+L ++P Q V +V H RT + + + L Q T SR + + E + S
Sbjct: 757 IEMPNLTSYPLLQRRLRPVERVQHGVRTKKFVKLCKKLSQQQDTASRYTKPYGEKDTSRY 816
Query: 688 KHLGLQTVEPCETDERD 704
K + V P +D D
Sbjct: 817 KSI---PVPPFASDTED 830
>gi|85111617|ref|XP_964022.1| hypothetical protein NCU09318 [Neurospora crassa OR74A]
gi|74629001|sp|Q7SDF3.1|MPH1_NEUCR RecName: Full=ATP-dependent DNA helicase mph-1
gi|28925781|gb|EAA34786.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 1168
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 236/561 (42%), Positives = 336/561 (59%), Gaps = 25/561 (4%)
Query: 30 ACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNL----GPKPQGTEEFNEGSSF 85
A +SKP+TS +T+ ++++++ +Q+TL + G L P PQ N
Sbjct: 72 AKTASKPTTSATTSRPSLAQSSQR-KNLRQTTL--WGGTLEEDAQPAPQAVS--NRPFRA 126
Query: 86 D---ESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAA 141
D E H +ID E KTW+YP+N+ P+RDYQF+I K LF+NTLVALPTGLGKT IAA
Sbjct: 127 DMPPEQPTHHEIDIEEMKTWVYPMNLGPIRDYQFSIVKNGLFNNTLVALPTGLGKTFIAA 186
Query: 142 VVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK 201
++ N+ RW K VF AP++PL QQ++AC +I GIP+ +TG+ P R W
Sbjct: 187 TIMLNYIRWTKTAKAVFVAPTKPLASQQVQACLSIAGIPRSQATLLTGETPPVLREDEWA 246
Query: 202 TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRIL 261
TKR+FF+TPQ L D+ G K +V LVIDEAHRATG+YAY + L RIL
Sbjct: 247 TKRLFFMTPQTLMNDLSKGYADPKSIVLLVIDEAHRATGDYAYVKVVEFLRRFSKSFRIL 306
Query: 262 ALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINN 321
ALTATPGS + +Q +IDNL IS +E R E D+ YVH+R I I + E +E+ +
Sbjct: 307 ALTATPGSSLEGVQDVIDNLGISHVEIRTEESIDIRQYVHSRDINTITFDPSDEMMEVRD 366
Query: 322 RIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFG 381
+ ++P ++LS+ + RD +L+ L+ +R+ + P ++ Q V A F
Sbjct: 367 LFSKALKPLVTKLSSQNIYYGRDPMSLTTYGLMKARNDWMAGPGRHVNQGTKFSVIATFA 426
Query: 382 ALITLYHIRRLLSSHGIRPAYEML-------EEKLKQGS-FARFMSKNEDIRKVKLLMQ- 432
L +L H +LL+ HGI+P Y L EEK +GS R + ++E+ +K+ +++
Sbjct: 427 ILQSLAHSIKLLNFHGIKPFYNNLAEFRTTEEEKGGKGSKLKRQVLEDENFQKMMDMIEG 486
Query: 433 -QSISHGAQSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK 490
I PKL + E LV+HF + ++R I+FS +R S +I+ L L+K
Sbjct: 487 WMKIDGFLGHPKLEYLCETLVNHFMDAGEGSNTRAIVFSEYRDSAEEIVRIL-NKQPLIK 545
Query: 491 ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
AT F+GQ+ K S+G QK Q +EKF+ G +NV+VATSIGEEGLDI +VDL++C+DA+
Sbjct: 546 ATVFVGQADSKRSEGMKQKQQIETIEKFKNGAHNVLVATSIGEEGLDIGQVDLIVCYDAS 605
Query: 551 VSPLRMIQRMGRTGRKHDGRI 571
SP+RM+QRMGRTGRK G I
Sbjct: 606 ASPIRMLQRMGRTGRKRAGNI 626
>gi|336464546|gb|EGO52786.1| hypothetical protein NEUTE1DRAFT_114701 [Neurospora tetrasperma
FGSC 2508]
Length = 1168
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 236/561 (42%), Positives = 336/561 (59%), Gaps = 25/561 (4%)
Query: 30 ACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNL----GPKPQGTEEFNEGSSF 85
A +SKP+TS +T+ ++++++ +Q+TL + G L P PQ N
Sbjct: 72 AKTASKPTTSATTSRPSPAQSSQR-KNLRQTTL--WGGTLEEDAQPAPQAVS--NRPFRA 126
Query: 86 D---ESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAA 141
D E H +ID E KTW+YP+N+ P+RDYQF+I K LF+NTLVALPTGLGKT IAA
Sbjct: 127 DMPPEQPTHHEIDIEEMKTWVYPMNLGPIRDYQFSIVKNGLFNNTLVALPTGLGKTFIAA 186
Query: 142 VVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK 201
++ N+ RW K VF AP++PL QQ++AC +I GIP+ +TG+ P R W
Sbjct: 187 TIMLNYIRWTKTAKAVFVAPTKPLASQQVQACLSIAGIPRSQATLLTGETPPVLREDEWA 246
Query: 202 TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRIL 261
TKR+FF+TPQ L D+ G K +V LVIDEAHRATG+YAY + L RIL
Sbjct: 247 TKRLFFMTPQTLMNDLSKGYADPKSIVLLVIDEAHRATGDYAYVKVVEFLRRFSKSFRIL 306
Query: 262 ALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINN 321
ALTATPGS + +Q +IDNL IS +E R E D+ YVH+R I I + E +E+ +
Sbjct: 307 ALTATPGSSLEGVQDVIDNLGISHVEIRTEESIDIRQYVHSRDINTITFDPSDEMMEVRD 366
Query: 322 RIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFG 381
+ ++P ++LS+ + RD +L+ L+ +R+ + P ++ Q V A F
Sbjct: 367 LFSKALKPLVTKLSSQNIYYGRDPMSLTTYGLMKARNDWMAGPGRHVNQGTKFSVIATFA 426
Query: 382 ALITLYHIRRLLSSHGIRPAYEML-------EEKLKQGS-FARFMSKNEDIRKVKLLMQ- 432
L +L H +LL+ HGI+P Y L EEK +GS R + ++E+ +K+ +++
Sbjct: 427 ILQSLAHSIKLLNFHGIKPFYNNLAEFRTTEEEKGGKGSKLKRQVLEDENFQKMMDMIEG 486
Query: 433 -QSISHGAQSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK 490
I PKL + E LV+HF + ++R I+FS +R S +I+ L L+K
Sbjct: 487 WMKIDGFLGHPKLEYLCETLVNHFMDAGEGSNTRAIVFSEYRDSAEEIVRIL-NKQPLIK 545
Query: 491 ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
AT F+GQ+ K S+G QK Q +EKF+ G +NV+VATSIGEEGLDI +VDL++C+DA+
Sbjct: 546 ATVFVGQADSKRSEGMKQKQQIETIEKFKNGAHNVLVATSIGEEGLDIGQVDLIVCYDAS 605
Query: 551 VSPLRMIQRMGRTGRKHDGRI 571
SP+RM+QRMGRTGRK G I
Sbjct: 606 ASPIRMLQRMGRTGRKRAGNI 626
>gi|397523573|ref|XP_003831802.1| PREDICTED: Fanconi anemia group M protein isoform 2 [Pan paniscus]
Length = 2022
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/508 (42%), Positives = 295/508 (58%), Gaps = 61/508 (12%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC Q +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYC--------------------------QAVQQV 232
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y H RK+E + V +G+E I +V+ + L
Sbjct: 233 ITNLLIGQIELRSEDSPDILAYSHERKVEKLIVPLGEELAAIQKTYIQVLESFAHSLIQR 292
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 293 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 352
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQ--------------QSISHG 438
+R Y L + G+ SK NED K+ ++ +I G
Sbjct: 353 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFARTRSTSANGISAIQQG 411
Query: 439 AQS-------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
++ PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 412 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLS 471
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL
Sbjct: 472 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDL 531
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ICFD+ SP+R++QRMGRTGRK GRI
Sbjct: 532 IICFDSQKSPIRLVQRMGRTGRKRQGRI 559
>gi|402078056|gb|EJT73405.1| ATP-dependent DNA helicase MPH1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1076
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 227/542 (41%), Positives = 328/542 (60%), Gaps = 26/542 (4%)
Query: 51 NKKPSTCKQSTLD-KFFGNLGP----KPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYP 105
NK+P Q+TL + + GP +P G G E H ++D EA KTW+YP
Sbjct: 97 NKQPRVFHQTTLSGRPLADSGPSQAQRP-GAGRTYRGDMPAEPPTHHELDNEALKTWVYP 155
Query: 106 VNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164
+N+ +RDYQF+I K LFSNTLVALPTGLGKT IAA V+ N++RW + KIVF AP++P
Sbjct: 156 MNLGAIRDYQFSIVKNGLFSNTLVALPTGLGKTFIAATVMLNYYRWTRNAKIVFVAPTKP 215
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM 224
L QQ+EAC +I GIP+ +TG++ P R W+ +R+FF+TPQ L D+ G
Sbjct: 216 LASQQVEACLSIAGIPRSAATLLTGEVKPALREEEWECRRLFFMTPQTLMNDLSKGYADP 275
Query: 225 KYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYIS 284
K +V LV+DEAHRATG+YAY I + R+LALTATPGS + +Q +IDNL +S
Sbjct: 276 KKIVLLVVDEAHRATGDYAYVKVIDFIRRFSKSFRVLALTATPGSTVEGVQAVIDNLGVS 335
Query: 285 TLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRD 344
+E R E D+ SYVH+R+I+ + +E E + + + ++P TS++S + RD
Sbjct: 336 HVEIRTEESIDIRSYVHSREIDRVVLEPSDEMLRLMELFSQALKPLTSKISQANIYYGRD 395
Query: 345 YQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEM 404
+++ L+ +R + P + Q + A F L L H +LL+ HGIRP YE
Sbjct: 396 PTSITTFGLMKARQDWFNGPGRHANQGTKMMLMAIFTILQGLAHAIKLLNFHGIRPFYEN 455
Query: 405 L-------EEKLKQGS-FARFMSKNEDIRKVK------LLMQQSISHGAQSPKLSKMLEV 450
L EEK ++GS + R + + +++ L + + H PKL+ + +
Sbjct: 456 LAAFRAETEEKGQKGSKYKRQILADAGFQEMMEIASNWLKLPDFVGH----PKLTHLCDT 511
Query: 451 LVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQK 509
L++HF + ++RVI+FS +R S +I+ L +V A+ F+GQ+ K S+G QK
Sbjct: 512 LLNHFMDAGEGSNTRVIVFSEYRDSAEEIVRVLNMHKPMVNASLFVGQADSKKSEGMKQK 571
Query: 510 VQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDG 569
Q +EKFR+G +NV+VATSIGEEGLDI +VDL+IC+DA+ SP+RM+QRMGRTGRK G
Sbjct: 572 QQIETIEKFRSGTFNVLVATSIGEEGLDIGQVDLIICYDASSSPIRMLQRMGRTGRKRAG 631
Query: 570 RI 571
+I
Sbjct: 632 KI 633
>gi|302411438|ref|XP_003003552.1| helicase C-terminal domain-containing protein [Verticillium
albo-atrum VaMs.102]
gi|261357457|gb|EEY19885.1| helicase C-terminal domain-containing protein [Verticillium
albo-atrum VaMs.102]
Length = 1128
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/502 (43%), Positives = 306/502 (60%), Gaps = 28/502 (5%)
Query: 90 CHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF 148
H +++ EA KTW+YP N+ VRDYQ++I K LF+NTLVALPTGLGKT IAA V+ NF
Sbjct: 144 THHELNNEALKTWVYPKNLGAVRDYQYSIVKNGLFNNTLVALPTGLGKTFIAATVMLNFH 203
Query: 149 RWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFV 208
RW KIVF AP++PLV QQ++AC NIVGI + T +TG ++P R W+ KRVFF+
Sbjct: 204 RWTKTAKIVFVAPTKPLVAQQVDACFNIVGISRSETTMLTGDVTPATRVDEWQAKRVFFM 263
Query: 209 TPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPG 268
TPQ L DI G K +V LV+DEAHR+TG YAY ++++ R+LALTATPG
Sbjct: 264 TPQTLLNDISRGYADPKSIVLLVVDEAHRSTGEYAYAKVVKQMRRFNPYFRVLALTATPG 323
Query: 269 SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIR 328
SK +T+Q +IDNL IS E R E D+ YVH R I+ ++ E EI + + ++
Sbjct: 324 SKVETVQEVIDNLGISHTEIRTEDSIDIRQYVHQRNIDQRIIDPSYEMCEIKDLFTKALK 383
Query: 329 PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYH 388
P +L+ + RD ++ L+ + ++ ++PQ + A F L +L H
Sbjct: 384 PMMDKLTKQNIYYGRDPMAITTFGLMKQEQDWMKSAGRHVPQPLQHMMRAIFAILKSLAH 443
Query: 389 IRRLLSSHGIRPAYEML-------EEKLKQG-----------SFARFMSKNEDIRKVKLL 430
+LL+ HGI+P ++ L EEK ++G SF M K E ++
Sbjct: 444 SIKLLNFHGIKPFFDNLKDFRSDVEEKGQKGSKYKKQLVADPSFQDMMQKIEGWLRIPSF 503
Query: 431 MQQSISHGAQSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLV 489
+ H PKL+++ E +++HF K+ +R I+FS +R S +I+ AL+ L+
Sbjct: 504 ----VGH----PKLAELAETMLNHFMDAKEGSATRAIVFSEYRDSAEEIVRALSIHKPLI 555
Query: 490 KATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA 549
K T F+GQ+ GK S G Q Q A +EKFR G YNV+VATSIGEEGLDI +VDL++C+DA
Sbjct: 556 KPTVFVGQAEGKRSAGMKQAQQIATVEKFRTGEYNVLVATSIGEEGLDIGQVDLIVCYDA 615
Query: 550 NVSPLRMIQRMGRTGRKHDGRI 571
+ SP+RM+QRMGRTGRK +G +
Sbjct: 616 SSSPIRMLQRMGRTGRKREGNV 637
>gi|332842130|ref|XP_003314350.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Pan
troglodytes]
Length = 2022
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/512 (41%), Positives = 296/512 (57%), Gaps = 61/512 (11%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTL LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLACLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC Q +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYC--------------------------QAVQQV 232
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E+ D+ +Y H RK+E + V +G+E I +V+ + L
Sbjct: 233 ITNLLIGQIELRSENSPDILAYSHERKVEKLIVPLGEELAAIQKTYIQVLESFAHSLIQR 292
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 293 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 352
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQ--------------QSISHG 438
+R Y L + G+ SK NED K+ ++ +I G
Sbjct: 353 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECVFARTRSTSANGISAIQQG 411
Query: 439 AQS-------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
++ PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 412 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLS 471
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL
Sbjct: 472 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDL 531
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
+ICFD+ SP+R++QRMGRTGRK GRI I
Sbjct: 532 IICFDSQKSPIRLVQRMGRTGRKRQGRIVVIL 563
>gi|339245571|ref|XP_003378711.1| fanconi anemia group M protein [Trichinella spiralis]
gi|316972366|gb|EFV56044.1| fanconi anemia group M protein [Trichinella spiralis]
Length = 1800
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/539 (41%), Positives = 311/539 (57%), Gaps = 59/539 (10%)
Query: 79 FNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTL 138
NE SS +E + D A +TWIYP NVP+R YQF I AL+ NTLV LPTGLGKTL
Sbjct: 116 LNEDSSLNEPMEIDGFDKSAGRTWIYPSNVPLRQYQFEIAAKALYYNTLVTLPTGLGKTL 175
Query: 139 IAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRAS 198
IAAVV+YNF+RW+P GKIVF AP++PLV QQ+EAC+ I+G+P E +MTG +P R
Sbjct: 176 IAAVVMYNFYRWYPSGKIVFMAPTKPLVAQQVEACYKIMGVPNEAVAEMTGCKNPASRKL 235
Query: 199 FWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL 258
W+TKR+FF+TPQV D+ C + + CLV+DEAHRATGN+AYC
Sbjct: 236 EWETKRMFFLTPQVFLNDLSRLACPVTDVKCLVVDEAHRATGNHAYC-------QYGSHF 288
Query: 259 RILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVE 318
R+LAL+ATPGS + +Q +I NL I+ LE R+E ++ Y H+R I+ I V V
Sbjct: 289 RVLALSATPGSDLKMVQQVIQNLLIAHLEIRSEDSAELQQYTHSRAIKKIVVPFEPVLVT 348
Query: 319 INNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEA 378
+ + V++ Y RLS +L R + S +L RDK+R N +E+
Sbjct: 349 VAEKYINVLQTYFDRLSQERVLTFRKLENYSKWQILQERDKYRANTNAN--SRDRSRIES 406
Query: 379 YFGALITLYHIRRLLSSHGIRPAYEMLEEK---------LKQG------------SFARF 417
F I+LYH L++ HG + + L +K L+Q + +
Sbjct: 407 LFHGAISLYHGYELMTMHGFKSLFNYLTDKVIGDQATPRLRQQLSCNCEFLDAYQTLRQT 466
Query: 418 MSKNEDI----------------------RKVKLLMQQSISHGAQSPKLSKMLEVLVDHF 455
NE I R ++ L SH PK+ K++E+L+DHF
Sbjct: 467 FDSNEQILKATQSKFANTDFNYSEEEWNNRVLETLQLAKTSH----PKMVKLIEILLDHF 522
Query: 456 KTKDPKH--SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKA-SKGQSQKVQQ 512
+ K +RVI+FS++R SV +I L + L+KA +F+GQS G++ SKG SQK Q
Sbjct: 523 QKNKEKQLSTRVIVFSSYRDSVSEITEMLNNLRPLIKAMKFVGQSYGRSTSKGISQKKQL 582
Query: 513 AVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
V+++F+ G YN +V+T +GEEGLDI EVDL++C+D+ SP+R++QRMGRT RK +G I
Sbjct: 583 EVVKEFQRGCYNTLVSTCVGEEGLDIGEVDLIVCYDSPTSPIRLVQRMGRTARKREGEI 641
>gi|389631741|ref|XP_003713523.1| ATP-dependent DNA helicase MPH1 [Magnaporthe oryzae 70-15]
gi|189082434|sp|A4RN08.1|MPH1_MAGO7 RecName: Full=ATP-dependent DNA helicase MPH1
gi|351645856|gb|EHA53716.1| ATP-dependent DNA helicase MPH1 [Magnaporthe oryzae 70-15]
Length = 1102
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 226/539 (41%), Positives = 326/539 (60%), Gaps = 18/539 (3%)
Query: 50 ANKKPSTCKQSTLDKFFGNLGPKPQGTEEFNEGSSFDESL-----CHVQIDAEAAKTWIY 104
A + T +Q+TL + P+P GT+ N F L H +D EA KTW+Y
Sbjct: 75 ARNQARTFQQTTLLGRIASQAPEPLGTQPRN-SRVFRADLPPEVPTHHALDPEALKTWVY 133
Query: 105 PVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163
P N+ P+RDYQF+I K LF+NTLVALPTGLGKT IAA VI NFFRW + ++VF AP++
Sbjct: 134 PTNLGPIRDYQFSIVKNGLFNNTLVALPTGLGKTFIAATVILNFFRWTRNAQMVFVAPTK 193
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL 223
PL QQ+EAC NI GIP+ + +TG+ P R + W+ KR+FF+TPQ L D+ G
Sbjct: 194 PLASQQVEACLNIAGIPRSQSTLLTGETKPVLREAEWEGKRLFFMTPQTLMNDLSKGYAD 253
Query: 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYI 283
K +V LV+DEAHRATG+YAY I + R+LALTATPGS + +Q +IDNL +
Sbjct: 254 PKRIVLLVVDEAHRATGDYAYVKVIEFIRRFSKSFRVLALTATPGSTVEGVQDVIDNLGV 313
Query: 284 STLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNR 343
S +E R E D+ +YVH+R+I+ + +E E + I+ + ++P S++S + R
Sbjct: 314 SHVEIRTEESIDIRNYVHSREIDRVVLEPSDEMLRISELFSQALKPLHSKISQQKIYIGR 373
Query: 344 DYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYE 403
D +++ LL +R + + P Q + A F L +L H +LL+ HGIRP Y+
Sbjct: 374 DPMSITTFGLLKARQDWMKGPGRFANQGLKMMLMAIFTILQSLAHAIKLLNYHGIRPFYD 433
Query: 404 ML-------EEKLKQGS-FARFMSKNEDIRKVKLLMQQ--SISHGAQSPKLSKMLEVLVD 453
L E+K ++GS + R + + +++ L + I A PKL+ + + L++
Sbjct: 434 NLVAFRSETEDKGQKGSKYKRQLIGEQSFQEMMDLASKWLKIDGFAGHPKLTHLCDNLLN 493
Query: 454 HF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQ 512
+F + +RVI+FS +R S +I L ++ A+ F+GQ+ K S+G QK Q
Sbjct: 494 YFMDAGEGSSTRVIVFSEYRDSAEEITRVLNVHKPMISASLFVGQADSKKSEGMKQKQQI 553
Query: 513 AVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ KFR G +NV+VATSIGEEGLDI +VDL+IC+DA+ SP+RM+QRMGRTGRK G+I
Sbjct: 554 ETIAKFRDGIFNVLVATSIGEEGLDIGQVDLIICYDASSSPIRMLQRMGRTGRKRAGKI 612
>gi|449504631|ref|XP_002200489.2| PREDICTED: Fanconi anemia group M protein [Taeniopygia guttata]
Length = 1594
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/500 (42%), Positives = 298/500 (59%), Gaps = 40/500 (8%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N+PVR YQ + AL +NTLV LPTGLGKT +AAVV+YNF+RWFP GK++
Sbjct: 52 AGSIWIYPTNLPVRPYQERMAGAALLANTLVCLPTGLGKTFVAAVVMYNFYRWFPSGKVL 111
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQ+EAC ++GIP +MTG R W TKRVFF+TPQ++ D+
Sbjct: 112 FLAPTKPLVAQQMEACGRVMGIPARDMAEMTGGTQALGRRELWNTKRVFFLTPQIMVNDL 171
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
GTC + CLVIDEAH+A GN+AYC +REL Q R+LAL+ATPGS + +Q +
Sbjct: 172 SRGTCPAVEIKCLVIDEAHKALGNHAYCQVVRELSKYTDQFRVLALSATPGSDTKAVQQV 231
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I+ +E E ++ Y H R++E I V +G+E VEI N +V+ + RL +
Sbjct: 232 ISNLLIAQIEVCAEDSPEIQPYSHERQVEKIVVPLGEELVEIQNTYIKVLEAFAGRLIKV 291
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
G+L RD L+ ++ +RD++R+ P I G +E F I+LYH LL G
Sbjct: 292 GVLSRRDIPNLTKYQIILARDQYRKNPSAQNAGIHQGIIEGDFALCISLYHGYELLLQMG 351
Query: 398 IRPAYEMLEEKLKQGS--FARF---MSKNEDIRKVKLLMQQSISHGAQS----------- 441
IR + L + GS +R + +NED ++ +Q S A +
Sbjct: 352 IRSLFIYL-WGIMDGSKGLSRTKGELGRNEDFMELYQQLQDMFSDTAVTPESGGVCKSTT 410
Query: 442 ------------PKLSKMLEVLVDHFKTKDPKH-----------SRVIIFSNFRGSVRDI 478
PKL K+ E++++HF++ + +RV+IFS+FR SV++I
Sbjct: 411 ALEKKKEFVYSHPKLKKLEEIVIEHFRSWKQRSDEEKSAGSAGDTRVMIFSSFRDSVQEI 470
Query: 479 MNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDI 538
LA + V+A F+G SSGK++KG +QK Q V+ +FR GGYN +V+T +GEEGLDI
Sbjct: 471 AEMLARLSPAVRAMTFVGHSSGKSTKGFTQKEQLEVVRRFREGGYNTLVSTCVGEEGLDI 530
Query: 539 MEVDLVICFDANVSPLRMIQ 558
EVDL++CFDA SP+R++Q
Sbjct: 531 GEVDLIVCFDAQRSPVRLVQ 550
>gi|395838644|ref|XP_003792222.1| PREDICTED: Fanconi anemia group M protein isoform 2 [Otolemur
garnettii]
Length = 2019
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/507 (42%), Positives = 297/507 (58%), Gaps = 60/507 (11%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++TALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLRISRTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQALTRKEIWCNKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC Q +Q +
Sbjct: 199 SRGVCPAVEIKCLVIDEAHKALGNYAYC--------------------------QAVQQV 232
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E + V +G+E I +V+ + S L
Sbjct: 233 ITNLLIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELAAIQKTYVQVLEAFASSLIQR 292
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L+ RD L+ ++ +RD+FR+ P PN+ + G +E F I+LYH LL G
Sbjct: 293 NVLR-RDIPNLTKYQIILARDQFRKNPSPNIVGKQQGVIEGEFAICISLYHGYELLQQMG 351
Query: 398 IRPAYEML---EEKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGA-------------- 439
+R Y L + K + ++ +S+NED ++ ++ +H +
Sbjct: 352 MRSLYYFLCGIMDGTKGMTRSKNELSRNEDFMELYNQLEGMFAHTSSPSAGGIAALQKGN 411
Query: 440 -------QSPKLSKMLEVLVDHFKTKDPKH--------SRVIIFSNFRGSVRDIMNALAT 484
PKL K+ EV+V+HFK+ + K+ +RV+IFS+FR SV++I L
Sbjct: 412 TDKKFFYSHPKLKKLEEVVVEHFKSWNAKNTSEKKCDETRVMIFSSFRDSVQEIAQMLLQ 471
Query: 485 IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
+++ F+G +SGK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL+
Sbjct: 472 HQPVIRVMTFVGHASGKSTKGFTQKEQVEVVKRFRDGGYNTLVSTCVGEEGLDIGEVDLI 531
Query: 545 ICFDANVSPLRMIQRMGRTGRKHDGRI 571
ICFDA SP+R++QRMGRTGRK GRI
Sbjct: 532 ICFDAQKSPIRLVQRMGRTGRKRQGRI 558
>gi|336267016|ref|XP_003348274.1| hypothetical protein SMAC_02772 [Sordaria macrospora k-hell]
gi|380091928|emb|CCC10194.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1039
Score = 414 bits (1065), Expect = e-112, Method: Compositional matrix adjust.
Identities = 240/602 (39%), Positives = 350/602 (58%), Gaps = 29/602 (4%)
Query: 30 ACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLGPKPQGTEEFNEGSSFD--- 86
A +SKP+ S + +L + ++++ +Q+TL + G L + Q + F
Sbjct: 76 AKTASKPAASATAARSLQAPSSQR-KNLRQTTL--WGGTLEEEAQTAPQAVSNRPFRADM 132
Query: 87 --ESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVV 143
E H +ID E KTW+YP+N+ P+RDYQF+I K LF+NTLVALPTGLGKT IAA +
Sbjct: 133 PPEQPTHHEIDLEEMKTWVYPMNLGPIRDYQFSIVKNGLFNNTLVALPTGLGKTFIAATI 192
Query: 144 IYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203
+ N+ RW K VF AP++PL QQ++AC +I GIP+ +TG+ P R W TK
Sbjct: 193 MLNYIRWTKTAKAVFVAPTKPLASQQVQACLSIAGIPRSQATLLTGETPPVLREDEWATK 252
Query: 204 RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILAL 263
R+FF+TPQ L D+ G K +V LVIDEAHRATG+YAY + L RILAL
Sbjct: 253 RLFFMTPQTLMNDLSKGYADPKSIVLLVIDEAHRATGDYAYVKVVEFLRRFSKSFRILAL 312
Query: 264 TATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI 323
TATPGS + +Q +IDNL IS +E R E D+ YVH+R I I + E +E+ +
Sbjct: 313 TATPGSSLEGVQDVIDNLGISHVEIRTEESIDIRQYVHSRDINTITFDPSDEMMEVRDLF 372
Query: 324 WEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGAL 383
+ ++P ++LS+ + RD +L+ L+ +R+ + P ++ Q V A F L
Sbjct: 373 SKALKPLVTKLSSQNIYYGRDPMSLTTYGLMKARNDWMAGPGKHVNQGNKFSVIATFAIL 432
Query: 384 ITLYHIRRLLSSHGIRPAYEML-------EEKLKQGS-FARFMSKNEDIRKVKLLMQ--Q 433
+L H +LL+ HGI+P Y L EEK +GS R + ++E+ +K+ +++
Sbjct: 433 QSLAHSIKLLNFHGIKPFYNNLAEFRSTEEEKGGKGSKLKRQVLEDENFQKMINMIEGWM 492
Query: 434 SISHGAQSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKAT 492
I PKL + E LV+HF + ++R I+FS +R S +I+ L L KAT
Sbjct: 493 KIDGFLGHPKLEYLCETLVNHFMDAGEGSNTRAIVFSEYRDSAEEIVRILNN-QPLTKAT 551
Query: 493 EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
F+GQ+ K S+G QK Q ++KF+ G YNV+VATSIGEEGLDI +VDL++C+DA+ S
Sbjct: 552 VFVGQADSKRSEGMKQKQQIETIQKFKDGVYNVLVATSIGEEGLDIGQVDLIVCYDASAS 611
Query: 553 PLRMIQRMGRTGRKHDGRIPHIF---KPEVQFVE-----LSIEQYVSRGKKVKDDHAITT 604
P+RM+QRMGRTGRK G I + K E +F E ++++ + G + H ++T
Sbjct: 612 PIRMLQRMGRTGRKRAGNIVLLLMKGKEEDKFNEAKDNYATMQKMICDGSRFSFRHDLST 671
Query: 605 PI 606
I
Sbjct: 672 RI 673
>gi|213405465|ref|XP_002173504.1| helicase C-terminal domain-containing protein [Schizosaccharomyces
japonicus yFS275]
gi|212001551|gb|EEB07211.1| helicase C-terminal domain-containing protein [Schizosaccharomyces
japonicus yFS275]
Length = 794
Score = 414 bits (1064), Expect = e-112, Method: Compositional matrix adjust.
Identities = 214/516 (41%), Positives = 317/516 (61%), Gaps = 11/516 (2%)
Query: 68 NLGPKPQGTEEF-NEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNT 126
N+ + +EF N + D Q+D EAAKTWIYP+N+ +RDYQF I K AL N
Sbjct: 32 NILKNGESIDEFMNRNVTEDNITLQHQLDTEAAKTWIYPINIELRDYQFNIVKKALTQNV 91
Query: 127 LVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID 186
LVALPTGLGKT IAAV++ N+ RWFP +VF AP++PLV QQ+EAC+ I GIP+ T +
Sbjct: 92 LVALPTGLGKTFIAAVLMMNYLRWFPQSYVVFLAPTKPLVTQQMEACYKIAGIPKSCTAE 151
Query: 187 MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCT 246
++GQ+ RA +K K+VFF+TPQ L+ D++ G C + CLV+DEAHR+ GNY+Y
Sbjct: 152 LSGQVPVATRAELYKEKKVFFLTPQTLQNDLKRGICDRMKISCLVVDEAHRSLGNYSYVE 211
Query: 247 AIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIE 306
+R + R+LALTATPGSK T+Q I+D+L+IS +E RNE+ D++ YV+ + ++
Sbjct: 212 VVRLIYMGNRNFRVLALTATPGSKIDTVQSIVDSLHISCIEIRNENSIDIAQYVYKKNVD 271
Query: 307 LIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP 366
V++ +I +R E++ P+ ++L+ L RD + ++ LL ++ KF
Sbjct: 272 CYPVDLNPLLCDIRDRYCELLEPFFTKLTKGNLYWVRDIKDITAFTLLQAKQKFLATAGQ 331
Query: 367 NLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRK 426
+ + +V F AL+T + LL HGI P Y L+E ++ S R K +
Sbjct: 332 SYTNNQRWDVLNTFDALVTFAYPLGLLLYHGITPFYSKLKEIQEECSKGRAGYKKRVLHD 391
Query: 427 VKL--LMQQSISHGAQ-----SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM 479
K LM + + +Q PKL + E++++HF + K +R+++F+ R S +I
Sbjct: 392 QKFIDLMSEMSCYISQPDFLGHPKLEHLQEIVLNHF--GENKDTRIMVFAEIRSSAEEIH 449
Query: 480 NALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIM 539
L+ V++ F+GQS+ KA G SQK+Q ++KF G N ++ATSIGEEGLDI
Sbjct: 450 RLLSRNSPTVRSAIFVGQSAKKAG-GMSQKLQNETVQKFHEGEINTLIATSIGEEGLDIG 508
Query: 540 EVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
EVDL+IC+DA+ SP+RM+QRMGRTGRK +G + +
Sbjct: 509 EVDLIICYDASSSPIRMLQRMGRTGRKREGNVSMLL 544
>gi|350296637|gb|EGZ77614.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 1168
Score = 414 bits (1064), Expect = e-112, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 335/561 (59%), Gaps = 25/561 (4%)
Query: 30 ACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNL----GPKPQGTEEFNEGSSF 85
A +SKP+ S +T+ ++++++ +Q+TL + G L P PQ N
Sbjct: 72 AKTASKPTASATTSRPSPAQSSQR-KNLRQTTL--WGGTLEEDAQPAPQAVS--NRPFRA 126
Query: 86 D---ESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAA 141
D E H +ID E KTW+YP+N+ P+RDYQF+I K LF+NTLVALPTGLGKT IAA
Sbjct: 127 DMPPEQPTHHEIDIEEMKTWVYPMNLGPIRDYQFSIVKNGLFNNTLVALPTGLGKTFIAA 186
Query: 142 VVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK 201
++ N+ RW K VF AP++PL QQ++AC +I GIP+ +TG+ P R W
Sbjct: 187 TIMLNYIRWTKTAKAVFVAPTKPLASQQVQACLSIAGIPRSQATLLTGETPPVLREDEWA 246
Query: 202 TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRIL 261
TKR+FF+TPQ L D+ G K +V LVIDEAHRATG+YAY + L RIL
Sbjct: 247 TKRLFFMTPQTLMNDLSKGYADPKSIVLLVIDEAHRATGDYAYVKVVEFLRRFSKSFRIL 306
Query: 262 ALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINN 321
ALTATPGS + +Q +IDNL +S +E R E D+ YVH+R I I + E +E+ +
Sbjct: 307 ALTATPGSSLEGVQDVIDNLGVSHVEIRTEESIDIRQYVHSRDINTITFDPSDEMMEVRD 366
Query: 322 RIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFG 381
+ ++P ++LS+ + RD +L+ L+ +R+ + P ++ Q V A F
Sbjct: 367 LFSKALKPLVTKLSSQNIYYGRDPMSLTTYGLMKARNDWMAGPGRHVNQGTKFSVIATFA 426
Query: 382 ALITLYHIRRLLSSHGIRPAYEML-------EEKLKQGS-FARFMSKNEDIRKVKLLMQ- 432
L +L H +LL+ HGI+P Y L EEK +GS R + ++E+ +K+ +++
Sbjct: 427 ILQSLAHSIKLLNFHGIKPFYNNLAEFRTTEEEKGGKGSKLKRQVLEDENFQKMMDMIEG 486
Query: 433 -QSISHGAQSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK 490
I PKL + E LV+HF + ++R I+FS +R S +I+ L L+K
Sbjct: 487 WMKIDGFLGHPKLEYLCETLVNHFMDAGEGSNTRAIVFSEYRDSAEEIVRIL-NKQPLIK 545
Query: 491 ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
AT F+GQ+ K S+G QK Q +EKF+ G +NV+VATSIGEEGLDI +VDL++C+DA+
Sbjct: 546 ATVFVGQADSKRSEGMKQKQQIETIEKFKNGAHNVLVATSIGEEGLDIGQVDLIVCYDAS 605
Query: 551 VSPLRMIQRMGRTGRKHDGRI 571
SP+RM+QRMGRTGRK G I
Sbjct: 606 ASPIRMLQRMGRTGRKRAGNI 626
>gi|367020256|ref|XP_003659413.1| hypothetical protein MYCTH_2296412 [Myceliophthora thermophila ATCC
42464]
gi|347006680|gb|AEO54168.1| hypothetical protein MYCTH_2296412 [Myceliophthora thermophila ATCC
42464]
Length = 1105
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 228/546 (41%), Positives = 332/546 (60%), Gaps = 23/546 (4%)
Query: 87 ESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY 145
E+ H +++ TW+YP+N+ P+RDYQF+I K LF+NTLVALPTGLGKT IAA ++
Sbjct: 146 ETPTHHELNHGELSTWVYPLNLGPIRDYQFSIVKNGLFNNTLVALPTGLGKTFIAATIML 205
Query: 146 NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205
N+FRW KIVF AP++PL QQ++AC NI GIP+ +TG+ P R W+ KR+
Sbjct: 206 NYFRWTKRSKIVFVAPTKPLASQQVQACLNIAGIPRSQATLLTGETPPVLREGEWQNKRL 265
Query: 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTA 265
FF+TPQ L D+ G K +V LVIDEAHRATG+YAY A+ + +RILALTA
Sbjct: 266 FFMTPQTLMNDLSKGFADPKSIVLLVIDEAHRATGDYAYVKAVEFIRRFSKSIRILALTA 325
Query: 266 TPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE 325
TPGS + +Q IIDNL IS +E R E D+ YVH+R I+ + + E ++ + +
Sbjct: 326 TPGSTVEGVQEIIDNLGISHVEIRTEESIDIRRYVHSRSIDTVTFDPSDEMHQVRDLFSK 385
Query: 326 VIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYFGALI 384
++P +LS+ + RD +L+ LL SR+++ P ++ Q KF V A F L
Sbjct: 386 ALKPLVDKLSSQNIYYGRDPMSLTTYGLLKSRNEWMAGPGRHVNQGTKFMMV-AVFSILQ 444
Query: 385 TLYHIRRLLSSHGIRPAYEML-------EEKLKQGS-FARFMSKNEDIRKVKLLMQQ--S 434
+L H+ +LL+ HGI+P Y L E K QGS R + +E+ +K+ ++++
Sbjct: 445 SLAHLIKLLNFHGIKPFYNGLAEFRASEEAKPGQGSKIKRQLLADENFQKMMSMIERWMR 504
Query: 435 ISHGAQSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
+ PKL+ + E LV+HF + ++R I+FS +R S +I+ L T L++AT
Sbjct: 505 LDEFNGHPKLTYLCERLVNHFMDAGEGANTRAIVFSEYRDSAEEIVRLLNT-QPLLRATV 563
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
F+GQ+ K S+G QK Q +EKF+ G +NV+VATSIGEEGLDI +VDL++C+DA+ SP
Sbjct: 564 FVGQADSKRSEGMKQKQQIETIEKFKKGVFNVLVATSIGEEGLDIGQVDLIVCYDASSSP 623
Query: 554 LRMIQRMGRTGRKHDGRIPHIF---KPEVQFVEL-----SIEQYVSRGKKVKDDHAITTP 605
+RM+QRMGRTGRK G I + K E +F+E ++Q + G H ++T
Sbjct: 624 IRMLQRMGRTGRKRAGNIVLLLMKGKEEEKFLEAKDNYQKMQQLICNGDSFTFRHDLSTR 683
Query: 606 IFKEKL 611
I ++
Sbjct: 684 ILPREI 689
>gi|346978259|gb|EGY21711.1| helicase C-terminal domain-containing protein [Verticillium dahliae
VdLs.17]
Length = 1128
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/502 (43%), Positives = 305/502 (60%), Gaps = 28/502 (5%)
Query: 90 CHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF 148
H +++ EA KTW+YP N+ VRDYQ++I K LF+NTLVALPTGLGKT IAA V+ NF
Sbjct: 144 THHELNNEALKTWVYPKNLGAVRDYQYSIVKNGLFNNTLVALPTGLGKTFIAATVMLNFH 203
Query: 149 RWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFV 208
RW KIVF AP++PLV QQ++AC NIVGI + T +TG ++P R W+ KRVFF+
Sbjct: 204 RWTKTAKIVFVAPTKPLVAQQVDACFNIVGISRLETTMLTGDVAPAIRVDEWQAKRVFFM 263
Query: 209 TPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPG 268
TPQ L DI G K +V LV+DEAHR+TG YAY ++++ R+LALTATPG
Sbjct: 264 TPQTLLNDISRGYADPKSIVLLVVDEAHRSTGEYAYAKVVKQMRRFNPYFRVLALTATPG 323
Query: 269 SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIR 328
SK +T+Q +IDNL IS E R E D+ YVH R I+ ++ E E+ + + ++
Sbjct: 324 SKVETVQEVIDNLGISHTEIRTEDSIDIRQYVHQRNIDQRIIDPSYEMCEVKDLFTKALK 383
Query: 329 PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYH 388
P +L+ + RD ++ L+ + ++ ++PQ + A F L +L H
Sbjct: 384 PMMDKLTKQNIYYGRDPMAITTFGLMKQEQDWMKSAGRHVPQPLQHMMRAIFAILKSLAH 443
Query: 389 IRRLLSSHGIRPAYEML-------EEKLKQG-----------SFARFMSKNEDIRKVKLL 430
+LL+ HGI+P ++ L EEK ++G SF M K E ++
Sbjct: 444 SIKLLNFHGIKPFFDNLKDFRSDVEEKGQKGSKYKKQLVADPSFQEMMQKVEGWLRIPSF 503
Query: 431 MQQSISHGAQSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLV 489
+ H PKL+++ E +++HF K+ +R I+FS +R S +I+ AL+ L+
Sbjct: 504 ----VGH----PKLAELAETMLNHFMDAKEGSATRAIVFSEYRDSAEEIVRALSIHKPLI 555
Query: 490 KATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA 549
K T F+GQ+ GK S G Q Q +EKFR G YNV+VATSIGEEGLDI +VDL++C+DA
Sbjct: 556 KPTVFVGQAEGKRSAGMKQAQQIETVEKFRTGEYNVLVATSIGEEGLDIGQVDLIVCYDA 615
Query: 550 NVSPLRMIQRMGRTGRKHDGRI 571
+ SP+RM+QRMGRTGRK +G +
Sbjct: 616 SSSPIRMLQRMGRTGRKREGNV 637
>gi|358398770|gb|EHK48121.1| hypothetical protein TRIATDRAFT_215658 [Trichoderma atroviride IMI
206040]
Length = 1084
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 227/508 (44%), Positives = 309/508 (60%), Gaps = 21/508 (4%)
Query: 93 QIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF 151
Q+D EA KTW+YP N+ P RDYQ++I + +LF+NTLVALPTGLGKT IAA V+ NF+RW
Sbjct: 137 QLDREAMKTWVYPTNLGPTRDYQYSIVRNSLFNNTLVALPTGLGKTFIAATVMLNFYRWT 196
Query: 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQ 211
KIVF AP++PLV QQI+AC+NI GIP+ T +TG I P R+ W+ +RVFF+TPQ
Sbjct: 197 KTAKIVFVAPTKPLVTQQIDACYNIAGIPRSETTLLTGDIPPALRSDEWEKRRVFFMTPQ 256
Query: 212 VLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQ 271
L D+ G K + +VIDEAHRA G YAY A R + R+LALTATPGSK
Sbjct: 257 TLLNDLSHGYADPKSIGLIVIDEAHRAVGEYAYAKATRLIRRFSNSFRVLALTATPGSKV 316
Query: 272 QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYT 331
+T+Q +IDNL IS E R E D+ YVH R I+ I +E E I E ++P T
Sbjct: 317 ETVQEVIDNLGISHCEIRTEESLDIRQYVHQRNIDQIVLEPSDEINLIGELFTEALKPLT 376
Query: 332 SRLSAIGLLQNRDYQTLSPVDLLNS-RDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR 390
+LSA + R+ L+ L+ + R+ F I+F + A F L +L H
Sbjct: 377 EKLSAQNIWYGRNPMALTTYGLIQAQREWFATRGHRANQGIQF-MMRAIFSVLTSLAHSI 435
Query: 391 RLLSSHGIRPAYEML-------EEKLKQGSFAR-----FMSKNEDIRKVKLLMQQSISHG 438
+LL HGIRP Y+ + E K ++GS R S E + K+ ++ G
Sbjct: 436 KLLQYHGIRPFYDNMVDFRSEQEGKGEKGSKYRRQILDSTSFQEMMDKISGWLKTDGFVG 495
Query: 439 AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQS 498
PKL+ + + +++HF + + +RVI+FS +R S +I+ T L+KAT F+GQ+
Sbjct: 496 --HPKLTALADCVLNHF-MDNGEATRVIVFSEYRDSAEEIVRMFNTHRPLIKATVFVGQA 552
Query: 499 SGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558
GK +G QK Q +EKF+ G YNV+VATSIGEEGLDI +VDL++C+D++ SP+RM+Q
Sbjct: 553 DGKRGEGMKQKQQIDTIEKFKTGAYNVLVATSIGEEGLDIGQVDLIVCYDSSASPIRMLQ 612
Query: 559 RMGRTGRKHDGRIPHIF---KPEVQFVE 583
RMGRTGRK G I + K E QF +
Sbjct: 613 RMGRTGRKRAGNITLLLMRGKEEEQFAK 640
>gi|440639733|gb|ELR09652.1| hypothetical protein GMDG_04143 [Geomyces destructans 20631-21]
Length = 988
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/541 (39%), Positives = 324/541 (59%), Gaps = 28/541 (5%)
Query: 57 CKQSTLDKFFGNLGPKPQGTEEFNEGSSF-----DESLCHVQIDAEAAKTWIYPVNV-PV 110
+Q+TL F G P + N+ S+ E+ H +D EA KTW+YP N+ +
Sbjct: 56 LRQTTL--FGGRAADNPLPASQVNKVHSYRVDLPPEAPTHHSLDIEALKTWVYPTNLGAI 113
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
RDYQ++ITK LF+NTLVALPTGLGKT IAA ++ N++RW D +IVF AP++PLV QQ+
Sbjct: 114 RDYQYSITKNGLFNNTLVALPTGLGKTFIAATIMLNYYRWTKDSQIVFMAPTKPLVAQQV 173
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+AC I GIP+ T +TG+ISP RA W +KRVFF+TPQ LE D+++G K +V L
Sbjct: 174 DACFYIAGIPRSSTTMLTGEISPALRAEEWASKRVFFMTPQTLENDLRTGLADPKKIVLL 233
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
V+DEAHRATGNY+Y I + RILALTATPGS + +Q +I+ L IS +E R
Sbjct: 234 VVDEAHRATGNYSYVKVIEFMRRFTKSFRILALTATPGSSVEAVQEVINGLEISKVEIRT 293
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D+ YVH R I+ + ++ +E V++ + + ++P +L NRD +L+P
Sbjct: 294 EESIDIQQYVHQRNIDQVILDPSEEIVKVQDLLSRTLKPLVDQLCGHNAYYNRDPLSLTP 353
Query: 351 VDLLNSRDKFRQAPPPNLPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAYEML---- 405
+L +++ + ++P G + + F L + H +LL+ HG+ P ++ +
Sbjct: 354 FGMLKAQETWLKSPAGKSANFGLKGMMRSLFTVLAGVSHGIKLLNFHGVGPFFQTMKDFR 413
Query: 406 ----EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHG--AQSPKLSKMLEVLVDHF---- 455
E K G + + + + +K+ L+ I+ PKL+ + + +++HF
Sbjct: 414 SEAEERGAKPGKYKKQIMDSPHFKKMMDLVNMWINKDDFVGHPKLTYLCDTVLNHFLDAG 473
Query: 456 --KTKD---PKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKV 510
+ +D P +R+I+F +RGS ++ L +V+A+ F+GQ+ K S G +Q +
Sbjct: 474 DGRREDGAPPSTTRIIVFCEYRGSAEEVARVLNRHAPMVRASVFVGQAGTKHSDGMNQAM 533
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
Q + KF+ G +NVIVATSIGEEGLDI +VDL++C+DA+ SP+RM+QRMGRTGRK G
Sbjct: 534 QIETIRKFKEGIFNVIVATSIGEEGLDIGQVDLIVCYDASSSPIRMLQRMGRTGRKRAGN 593
Query: 571 I 571
I
Sbjct: 594 I 594
>gi|261196434|ref|XP_002624620.1| ATP-dependent DNA helicase MPH1 [Ajellomyces dermatitidis SLH14081]
gi|239595865|gb|EEQ78446.1| ATP-dependent DNA helicase MPH1 [Ajellomyces dermatitidis SLH14081]
gi|239609438|gb|EEQ86425.1| ATP-dependent DNA helicase MPH1 [Ajellomyces dermatitidis ER-3]
gi|327357011|gb|EGE85868.1| ATP-dependent DNA helicase MPH1 [Ajellomyces dermatitidis ATCC
18188]
Length = 1145
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/511 (42%), Positives = 304/511 (59%), Gaps = 29/511 (5%)
Query: 86 DESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI 144
+E H ++D+ A ++WIYP+N+ R+YQF IT+ ALF N LVALPTGLGKT IAA V+
Sbjct: 302 NEPPTHHKLDSTAVRSWIYPINLGKKREYQFNITQRALFHNLLVALPTGLGKTFIAATVM 361
Query: 145 YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204
N+FRW D +I+F AP++PLV QQ+ AC I GIP+ T+ +TG P RA W++KR
Sbjct: 362 LNWFRWTTDAQIIFVAPTKPLVSQQVAACFGIAGIPRSQTVMLTGSTVPAIRAEEWQSKR 421
Query: 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264
VFF+TPQ L D++SG K +V LV+DEAHRATG+YAY A++ L R+LALT
Sbjct: 422 VFFMTPQTLVNDLKSGHADPKRIVLLVVDEAHRATGSYAYVEAVKLLQKYNTSFRVLALT 481
Query: 265 ATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
ATPGS + +Q +ID L IS +E R E D+S YVH+R +E+ E E V +
Sbjct: 482 ATPGSTVEAVQGVIDGLNISRVEIRTEESLDISEYVHSRNVEIKTFENSDEMVMCMDLFG 541
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKF-GEVEAYFGAL 383
+ ++P +L A +D TL+P L + ++ +P F G + F L
Sbjct: 542 KSLQPVLDKLRAQNAYWAKDPMTLTPYGLRVASQEWMNSPAGRNANYSFKGMILNIFSVL 601
Query: 384 ITLYHIRRLLSSHGIRPAYEML---EEKLKQGSFARFMSKNEDIRKVKLLM--------- 431
+L H LL HGI P Y L + L G ++ + D K LM
Sbjct: 602 SSLAHAIDLLKFHGIGPFYRNLVAFQSSLSDGGGGKYRRQVADNENFKTLMNRLRTWTNN 661
Query: 432 QQSISHGAQSPKLSKMLEVLVDHF-----------KTKDPKHSRVIIFSNFRGSVRDIMN 480
+ I H PKL + +V+++HF + P ++R+++F++FR S +I+
Sbjct: 662 EDFIGH----PKLQYLKQVVLNHFMDAEVNGDTPSANRRPSNTRIMVFAHFRDSAEEIVR 717
Query: 481 ALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIME 540
LA G +++ F+GQ++ K S+G QK Q ++EKF+ G YN IVATSIGEEGLDI E
Sbjct: 718 VLARHGPMIRPHVFVGQAAAKGSEGMDQKTQLDIIEKFKKGTYNTIVATSIGEEGLDIGE 777
Query: 541 VDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
VDL++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 778 VDLIVCYDSSASPIRMLQRMGRTGRKRRGNI 808
>gi|116180300|ref|XP_001219999.1| hypothetical protein CHGG_00778 [Chaetomium globosum CBS 148.51]
gi|121791807|sp|Q2HG76.1|MPH1_CHAGB RecName: Full=ATP-dependent DNA helicase MPH1
gi|88185075|gb|EAQ92543.1| hypothetical protein CHGG_00778 [Chaetomium globosum CBS 148.51]
Length = 1134
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 225/541 (41%), Positives = 323/541 (59%), Gaps = 23/541 (4%)
Query: 87 ESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY 145
E+ H ++ + TW+YP+N+ +RDYQF+I K LF NTLVALPTGLGKT IAA ++
Sbjct: 163 ETPTHHELQHDELSTWVYPLNLGAIRDYQFSIVKNGLFHNTLVALPTGLGKTFIAATIML 222
Query: 146 NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205
N+FRW KIVF AP++PL QQ++AC I GIP+ +TG+ P R W++KR+
Sbjct: 223 NYFRWTKRSKIVFVAPTKPLASQQVQACLGIAGIPRSQATLLTGETPPVLRQGEWESKRL 282
Query: 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTA 265
FF+TPQ L D+ G K +V LV+DEAHRATG+YAY + + +RILALTA
Sbjct: 283 FFMTPQTLMNDLSKGYADPKSIVLLVVDEAHRATGDYAYVKVVEFIRRFSKSIRILALTA 342
Query: 266 TPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE 325
TPGS + +Q IIDNL IS +E R E D+ YVH+R I+ + + E E+ +
Sbjct: 343 TPGSTVEGVQDIIDNLGISHVEIRTEESIDIRQYVHSRNIDTVTFDPSDEMHEVRGLFSK 402
Query: 326 VIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYFGALI 384
++P +LSA + RD L+ LL SR ++ P + Q +KF + A F L
Sbjct: 403 ALKPLVDKLSAQNIYYGRDPMNLTTFGLLKSRQEWLAGPGGHANQGVKF-MMMAVFSILQ 461
Query: 385 TLYHIRRLLSSHGIRPAYEMLEE-------KLKQGS-FARFMSKNEDIRKVKLLMQQ--S 434
+L H+ +LL+ HGI+P Y L E K QGS R + +E +++ L+++
Sbjct: 462 SLAHLIKLLNFHGIKPFYNGLAEFRSSEEGKPGQGSKLKRQLLADESFQRMMALIERWMR 521
Query: 435 ISHGAQSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
+ PKL+ + E LV+HF + ++R I+FS +R S +I+ L L++AT
Sbjct: 522 MEEFNGHPKLTYLCETLVNHFIDAGENSNTRAIVFSEYRDSAEEIVRLLNN-QPLIRATV 580
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
F+GQ+ K S+G QK Q +EKF+ GG+NV+VATSIGEEGLDI +VDL++C+DA+ SP
Sbjct: 581 FVGQADSKRSEGMKQKQQIETIEKFKNGGFNVLVATSIGEEGLDIGQVDLIVCYDASASP 640
Query: 554 LRMIQRMGRTGRKHDGRIPHIF---KPEVQFVEL-----SIEQYVSRGKKVKDDHAITTP 605
+RM+QRMGRTGRK G I + K E +F+E ++Q + G H ++T
Sbjct: 641 IRMLQRMGRTGRKRAGNIVLLLMKGKEEEKFLEAKDNYQKMQQLICNGDGFTFRHDLSTR 700
Query: 606 I 606
I
Sbjct: 701 I 701
>gi|413925495|gb|AFW65427.1| hypothetical protein ZEAMMB73_976270 [Zea mays]
Length = 537
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 189/325 (58%), Positives = 244/325 (75%)
Query: 88 SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNF 147
LC V +D EA KTWIYP NV VR+YQ + + ALF+NTL+ALPTGLGKT IAAVV+YN+
Sbjct: 205 GLCAVSLDHEAVKTWIYPTNVEVREYQKYMVEKALFTNTLIALPTGLGKTFIAAVVMYNY 264
Query: 148 FRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFF 207
FRWFP+GKI+F PSRPLV QQIEACHN VGIPQEW IDM G P+ R+ WK+KRVFF
Sbjct: 265 FRWFPEGKIIFTCPSRPLVTQQIEACHNTVGIPQEWIIDMKGDQCPSIRSVHWKSKRVFF 324
Query: 208 VTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267
VTPQVL+ DIQSG C+++ +VCLVIDEAHRA+GNYAYC IREL++ V LRILALTATP
Sbjct: 325 VTPQVLQNDIQSGICMVQQIVCLVIDEAHRASGNYAYCMVIRELLAARVPLRILALTATP 384
Query: 268 GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVI 327
GSK IQ +IDNL IS L Y +E D V+ YV+ RK+EL++V G +A ++ + + ++I
Sbjct: 385 GSKHSDIQSVIDNLNISELIYCDEEDSRVNQYVNTRKVELVQVPFGSDATQVADMLLDII 444
Query: 328 RPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY 387
RP+ +RL G++ +RDY + +LL +DKF++ PPPN+ +I+ GE+E F L L
Sbjct: 445 RPHINRLRDAGVIDHRDYSNWTQFELLKFKDKFKEVPPPNIHEIERGEIERSFVILGPLC 504
Query: 388 HIRRLLSSHGIRPAYEMLEEKLKQG 412
H R+LL SHG + A+ L+++LK G
Sbjct: 505 HTRKLLLSHGTQFAHGYLDKRLKGG 529
>gi|340522441|gb|EGR52674.1| predicted protein [Trichoderma reesei QM6a]
Length = 1096
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 221/509 (43%), Positives = 311/509 (61%), Gaps = 23/509 (4%)
Query: 93 QIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF 151
++D EA KTW+YP N+ P RDYQF+I K +LF+NTLVALPTGLGKT IAA V+ NF+RW
Sbjct: 137 ELDREAMKTWVYPTNLGPTRDYQFSIVKNSLFNNTLVALPTGLGKTFIAATVMLNFYRWT 196
Query: 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQ 211
KIVF AP++PLV QQI+AC++I GIP+ T +TG I P R+ W+ +RVFF+TPQ
Sbjct: 197 RSAKIVFVAPTKPLVTQQIDACYHIAGIPRSETTLLTGDIPPALRSDEWEKRRVFFMTPQ 256
Query: 212 VLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQ 271
L D+ G K + +VIDEAHRA G YAY A + + R+LALTATPGSK
Sbjct: 257 TLLNDLSHGYADPKSICLMVIDEAHRAVGEYAYAKATKLIRRFSNSFRVLALTATPGSKV 316
Query: 272 QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYT 331
+T+Q +IDNL IS E R E D+ YVH R I+ I +E E I+ E ++P T
Sbjct: 317 ETVQEVIDNLGISHCEIRTEESLDIRQYVHQRNIDQIILEPSDEMNLISELFTEALKPLT 376
Query: 332 SRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRR 391
+LS+ + R+ L+ L+ ++ ++ Q + A F L +L H +
Sbjct: 377 EKLSSQNIWYGRNPMALTTYGLIQAQKEWFATRGNRANQGVQFMMRAIFSVLTSLAHSIK 436
Query: 392 LLSSHGIRPAYEML-------EEKLKQGS-FARFM----SKNEDIRKVK--LLMQQSISH 437
LL HGI+P Y+ + E+K ++GS + R + S E + K+ L M + H
Sbjct: 437 LLQFHGIKPFYDNMLDFRSEQEDKGEKGSKYKRQILDSPSFQEMMDKIAGWLKMDGFVGH 496
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ 497
PKL+ + + +++HF + + +RVI+FS +R S +I+ L+KAT F+GQ
Sbjct: 497 ----PKLTALADCVLNHF-MDNGESTRVIVFSEYRDSAEEIVRMFNAHRPLIKATVFVGQ 551
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
+ GK +G QK Q +E+F+ G YNV+VATSIGEEGLDI +VDL++C+D++ SP+RM+
Sbjct: 552 ADGKRGEGMKQKQQIETIERFKTGAYNVLVATSIGEEGLDIGQVDLIVCYDSSASPIRML 611
Query: 558 QRMGRTGRKHDGRIPHIF---KPEVQFVE 583
QRMGRTGRK G I + K E QF +
Sbjct: 612 QRMGRTGRKRAGNIALLLMRGKEEEQFAK 640
>gi|320590134|gb|EFX02577.1| dead box helicase [Grosmannia clavigera kw1407]
Length = 1329
Score = 408 bits (1048), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/495 (42%), Positives = 301/495 (60%), Gaps = 10/495 (2%)
Query: 87 ESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY 145
E+ H ++D E KTW+YP N+ P+RDYQF I K LF NTLVALPTGLGKT IAA VI
Sbjct: 165 ETPTHHKLDQEQLKTWVYPTNLGPIRDYQFNIVKNGLFHNTLVALPTGLGKTFIAATVIL 224
Query: 146 NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205
NF+RW D K+VF AP++PLV QQ+EAC I GIP+ T +TG +P RA+ W +KR+
Sbjct: 225 NFYRWTKDAKMVFVAPTKPLVSQQVEACFTIAGIPRSETTLLTGDTAPALRAAEWASKRL 284
Query: 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTA 265
FF+TPQ L+ D+ G K +V LVIDEAHRATG+YAY I + R+LALTA
Sbjct: 285 FFMTPQTLQNDLSKGYADPKSIVLLVIDEAHRATGDYAYVKVIGFIRRFTKSFRVLALTA 344
Query: 266 TPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE 325
TPGS + +Q +I+NL +S +E R E D+ YVH R +E ++ E + + +
Sbjct: 345 TPGSTVEGVQDVINNLGVSHVEIRTEESLDIRQYVHGRDVERFVLDPSVEIKFVQEHLSK 404
Query: 326 VIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALIT 385
++P+ +L + RD +L+ L+ +R ++ P +L Q A F L +
Sbjct: 405 ALKPFCEKLDQQKIWYGRDPMSLTMFGLMKARQEWMAGPARHLNQGTKYMTMAVFAVLQS 464
Query: 386 LYHIRRLLSSHGIRPAYEML-------EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHG 438
+ H +LL+ HGI+P ++ + E+ K + + + + D +++ L +++ +
Sbjct: 465 VAHAIKLLNFHGIKPFHDSMAELRSTTEKDEKGPKYRKQLVGDPDFQEMMLTVERWLQED 524
Query: 439 A--QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIG 496
+ PK+ + E L HF+ ++R I+FS +R S +I+ L +KA F+G
Sbjct: 525 SFESHPKIGFLKERLNTHFQDNLGSNTRAIVFSEYRDSAEEIVRTLNRCSPNIKAAIFVG 584
Query: 497 QSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
Q+ K S G QK Q +EKF+AG +NV+VATSIGEEGLDI +VDL+IC+DA+ SP+RM
Sbjct: 585 QADSKRSSGMKQKQQIEAIEKFKAGAFNVLVATSIGEEGLDIGQVDLIICYDASSSPIRM 644
Query: 557 IQRMGRTGRKHDGRI 571
+QRMGRTGRK G +
Sbjct: 645 LQRMGRTGRKRAGHV 659
>gi|302926399|ref|XP_003054288.1| hypothetical protein NECHADRAFT_31148 [Nectria haematococca mpVI
77-13-4]
gi|256735229|gb|EEU48575.1| hypothetical protein NECHADRAFT_31148 [Nectria haematococca mpVI
77-13-4]
Length = 1071
Score = 408 bits (1048), Expect = e-110, Method: Compositional matrix adjust.
Identities = 220/534 (41%), Positives = 319/534 (59%), Gaps = 35/534 (6%)
Query: 54 PSTCKQSTLDKFFGNLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNV-PVRD 112
P T + +T F +L P+P+ H ID EA KTW+YP N+ +RD
Sbjct: 91 PRTSQPATARVFRADLPPEPR---------------THHAIDEEAMKTWVYPTNLGAIRD 135
Query: 113 YQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEA 172
YQF+I K +LF+NTLVALPTGLGKT IAA V+ NF+RW K+VF AP++PLV QQ++A
Sbjct: 136 YQFSIVKNSLFNNTLVALPTGLGKTFIAATVMLNFYRWTKTAKLVFVAPTKPLVAQQVDA 195
Query: 173 CHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVI 232
C+NI GIP+ T +TG I P R W+ +RVFF+TPQ L DI G K + LVI
Sbjct: 196 CYNIAGIPRSETTLLTGDIPPALRVDEWEARRVFFMTPQTLLNDISHGYADPKQIALLVI 255
Query: 233 DEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNES 292
DEAHR G YAY + + R+LALTATPGSK +T+Q +IDNL IS E R E
Sbjct: 256 DEAHRGVGEYAYAKVTKLIRRFSNSFRVLALTATPGSKIETVQEVIDNLGISHCEIRTED 315
Query: 293 DQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVD 352
D+ YVH R IE + ++ E ++ + ++P T +LS+ + R+ ++
Sbjct: 316 SIDIRQYVHQRNIEQVVLDPSDEMCLVSELFTKALKPLTDKLSSQNIWFGRNPMAITAYG 375
Query: 353 LLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEML------- 405
L+ S+ ++ + + Q + A F L ++ H +LL+ HGI+P Y+ L
Sbjct: 376 LMQSQKEWFASRGRHANQGVQHMMRAVFSVLTSIAHSIKLLNFHGIKPFYDNLVDLRSEQ 435
Query: 406 EEKLKQGS-FARFMSKNEDIRKVKLLMQQSISHGAQS------PKLSKMLEVLVDHFKTK 458
E K ++GS + R + ++ + ++ M IS ++ PKL+ + + +++HF K
Sbjct: 436 EGKGEKGSKYKRQLIQDSNFQE----MMDKISKWLRTDGFVGHPKLTALADTVLNHFMDK 491
Query: 459 -DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEK 517
+ +RVI+FS +R S DI+ L T L+KA+ F+GQ+ GK +G Q Q A +E+
Sbjct: 492 GEGSATRVIVFSEYRDSAEDIVRMLNTHRPLIKASVFVGQADGKRGEGMKQAQQIAAIER 551
Query: 518 FRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
F+ G +NV+VATSIGEEGLDI +VDL++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 552 FKRGEFNVLVATSIGEEGLDIGQVDLIVCYDSSASPIRMLQRMGRTGRKRAGNI 605
>gi|296421581|ref|XP_002840343.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636558|emb|CAZ84534.1| unnamed protein product [Tuber melanosporum]
Length = 1066
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 232/542 (42%), Positives = 317/542 (58%), Gaps = 32/542 (5%)
Query: 58 KQSTLDKFFGNL----GPKPQGTEEFNEGS--SFDESLCHVQIDAEAAKTWIYPVNVPVR 111
+QSTL FG + G +P T S E H +ID EAAKTWIYP N+P R
Sbjct: 111 RQSTL---FGGIVEENGSQPSSTPVLRSWPLVSTQEPPTHHKIDREAAKTWIYPANIPHR 167
Query: 112 DYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIE 171
DYQ++I ALFSN LVALPTGLGKTLIAA VI NFFRW P+G+I F AP++PLV QQI+
Sbjct: 168 DYQYSIVSRALFSNVLVALPTGLGKTLIAATVILNFFRWAPEGQIAFLAPTKPLVAQQID 227
Query: 172 ACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLV 231
AC NIVGIP+ T +MTG + +R +W+ KRVFF+TPQ ++ DI G C K +VCLV
Sbjct: 228 ACFNIVGIPRSATAEMTGNVGVQQRRDYWEEKRVFFLTPQTMQNDIARGICDAKRIVCLV 287
Query: 232 IDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNE 291
IDEAHRATGNYAY ++ L V R+LALTATPGS +Q +ID+ I+ E RN
Sbjct: 288 IDEAHRATGNYAYVQVVKLLRRVNNSFRVLALTATPGSTIDKVQAVIDSCGIAGTEIRNL 347
Query: 292 SDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPV 351
D+ YV+ R L E+ E VE+ + + + P +L+ + D + +S
Sbjct: 348 ESLDIRPYVYKRFQHLQVFELTDEMVELRDLYCKCLEPLLKKLNDARAYRVTDIKAIS-- 405
Query: 352 DLLNSRDKFRQAPPPNL-----PQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLE 406
+ + R+ N P +K G + F L +L L+ HG+R + L
Sbjct: 406 -MFGVQQAGREWMTSNAGRDANPALK-GMMLNAFSTLSSLALPLHFLTEHGVRVFFNKLS 463
Query: 407 E-------KLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQS--PKLSKMLEVLVDHF-- 455
E K G + + +E+ RKV Q+ +S+ S PKL + V++ HF
Sbjct: 464 EVQAEVFSNPKGGKTKKGIINDENFRKVMGKCQELVSNKEYSGHPKLDYLASVVLKHFFD 523
Query: 456 --KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
+ + +R++IF+++R S +I+ L+ +VK F+GQ+ GK +G QK Q
Sbjct: 524 AEDAETKRETRIMIFTSYRSSAEEIVRVLSKHQPIVKPHIFVGQADGKGVEGMKQKDQIE 583
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH 573
V++ F+ G YNVIVATSIGEEGLDI EVD++IC+D S +R++QRMGRTGRK DG + H
Sbjct: 584 VIKDFQVGIYNVIVATSIGEEGLDIGEVDMIICYDQQGSSIRLLQRMGRTGRKRDGHV-H 642
Query: 574 IF 575
I
Sbjct: 643 IL 644
>gi|171687943|ref|XP_001908912.1| hypothetical protein [Podospora anserina S mat+]
gi|170943933|emb|CAP69585.1| unnamed protein product [Podospora anserina S mat+]
Length = 1064
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 225/539 (41%), Positives = 326/539 (60%), Gaps = 23/539 (4%)
Query: 90 CHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF 148
H +++ TW+YP+N+ P+RDYQF I +ALF+NTLVALPTGLGKT IAA V+ NF+
Sbjct: 142 THHELNDCELSTWVYPLNLGPIRDYQFTIVNSALFNNTLVALPTGLGKTFIAATVMLNFY 201
Query: 149 RWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFV 208
RW GKIVF AP++PL QQ++AC ++ GIP+ +TG+ +P R + W+TKR+FF+
Sbjct: 202 RWTKRGKIVFVAPTKPLASQQVKACLDVAGIPRSEATLLTGETAPALREAEWETKRLFFM 261
Query: 209 TPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPG 268
TPQ L+ D+ G K +V LV+DEAHRATG+YAY I L R+LALTATPG
Sbjct: 262 TPQTLQNDLSKGYADPKSVVLLVVDEAHRATGDYAYVKVIEFLRRFSQSFRVLALTATPG 321
Query: 269 SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIR 328
S + +Q++IDNL IS +E R E D+ YVH+R I ++ E +E+ + ++
Sbjct: 322 SSVEGVQNVIDNLGISHIEIRTEESLDIRQYVHSRDTNTIILDPSDEMMEVRGLFSKALQ 381
Query: 329 PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYFGALITLY 387
P +LSA + RD +L+ L+ SR + + Q +KF + A F L +L
Sbjct: 382 PLVDKLSAQNIYFGRDPMSLTTYGLMKSRSDWLAGAGRHANQGLKFA-MFAVFSILQSLA 440
Query: 388 HIRRLLSSHGIRPAYEML-------EEKLKQG-SFARFMSKNEDIRKVKLLMQQSISHGA 439
H +LL+ HGI+P Y L EEK +G S R + +E +K+ ++++ +
Sbjct: 441 HSIKLLNFHGIKPFYHNLLEFRNSEEEKGGKGSSMRRQVINDESFKKMMTMIEKWMKLDG 500
Query: 440 QS--PKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIG 496
S PKL + E L+ HF + +RVI+FS +R S +I+ L + L+ AT F+G
Sbjct: 501 FSGHPKLDCLCETLMHHFMDAGEGSSTRVIVFSEYRDSAEEIVRVLNS-KPLISATVFVG 559
Query: 497 QSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
Q+ K S+G QK Q +EKF+ G YNV+VATSIGEEGLDI +VDL++C+DA+ SP+RM
Sbjct: 560 QADSKRSEGMKQKQQIETIEKFKNGQYNVLVATSIGEEGLDIGQVDLIVCYDASSSPIRM 619
Query: 557 IQRMGRTGRKHDGRIPHIF---KPEVQFVELS-----IEQYVSRGKKVKDDHAITTPIF 607
+QRMGRTGRK G+I + K + +F+E ++Q + G H ++T I
Sbjct: 620 LQRMGRTGRKRAGKIVLLLMKGKEQEKFLEAKDNYARMQQLICDGDSFNFRHDLSTRII 678
>gi|297297766|ref|XP_001096470.2| PREDICTED: Fanconi anemia group M protein isoform 1 [Macaca
mulatta]
Length = 2024
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/512 (41%), Positives = 290/512 (56%), Gaps = 61/512 (11%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC Q +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYC--------------------------QAVQQV 232
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y + RKIE + V +G+E I +++ + L
Sbjct: 233 ITNLLIGQIELRSEDSPDILAYSYERKIEKLIVPLGEELAAIQKTYIQILESFAHSLIQR 292
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 293 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGVIEGEFAICISLYHGYELLQQMG 352
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQQSISHGAQS----------- 441
+R Y L + G+ SK NED K+ ++ +H +
Sbjct: 353 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFAHTRSTSADSVSAIQQG 411
Query: 442 ----------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 412 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTSEKKRDETRVMIFSSFRDSVQEIAEMLS 471
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q V++ R GG N +V T +GEEGLDI EVDL
Sbjct: 472 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEVIKLARDGGSNSLVYTCVGEEGLDIGEVDL 531
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
+ICFD+ SP+R++QRMGRTGRK GRI I
Sbjct: 532 IICFDSQKSPIRLVQRMGRTGRKRQGRIVVIL 563
>gi|358387248|gb|EHK24843.1| hypothetical protein TRIVIDRAFT_30360 [Trichoderma virens Gv29-8]
Length = 1094
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 219/509 (43%), Positives = 309/509 (60%), Gaps = 23/509 (4%)
Query: 93 QIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF 151
++D EA KTW+YP N+ P RDYQ++I + +LF+NTLVALPTGLGKT IAA V+ NF+RW
Sbjct: 136 ELDREAMKTWVYPTNLGPTRDYQYSIVRNSLFNNTLVALPTGLGKTFIAATVMLNFYRWT 195
Query: 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQ 211
KIVF AP++PLV QQI+AC+NI GIP+ T +TG I+P R+ W+ +RVFF+TPQ
Sbjct: 196 KTAKIVFVAPTKPLVTQQIDACYNIAGIPRSETTLLTGDIAPALRSDEWEKRRVFFMTPQ 255
Query: 212 VLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQ 271
L D+ G K + +VIDEAHRA G YAY A + + R+LALTATPGSK
Sbjct: 256 TLLNDLSHGYADPKSIGLMVIDEAHRAVGEYAYAKATKLIRRFSNSFRVLALTATPGSKV 315
Query: 272 QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYT 331
+T+Q +IDNL IS E R E D+ YVH R I+ I ++ E I E ++P T
Sbjct: 316 ETVQEVIDNLGISHCEIRTEESLDIRQYVHQRNIDQIVLDPSDEMNLIGELFTEALKPLT 375
Query: 332 SRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRR 391
+LS+ + R+ L+ L+ ++ ++ Q + A F L +L H +
Sbjct: 376 EKLSSQNIWYGRNPMALTTYGLIQAQKEWFATRGNRANQGVQFMMRAIFSVLTSLAHSIK 435
Query: 392 LLSSHGIRPAYEML-------EEKLKQGSFARFM-----SKNEDIRKVK--LLMQQSISH 437
LL HGI+P Y+ + E K ++GS R S E + K+ L + + H
Sbjct: 436 LLQFHGIKPFYDNMVDFRSEQEGKGEKGSKYRRQIIDSTSFQEMMDKIAGWLKLDGFVGH 495
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ 497
PKL+ + + +++HF + + +RVI+FS +R S +I+ T L+KAT F+GQ
Sbjct: 496 ----PKLTALADCVLNHF-MDNGEGTRVIVFSEYRDSAEEIVRMFNTHRPLIKATVFVGQ 550
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
+ GK +G QK Q +E+F+ G YNV+VATSIGEEGLDI +VDL++C+D++ SP+RM+
Sbjct: 551 ADGKRGEGMKQKQQIDTIERFKTGAYNVLVATSIGEEGLDIGQVDLIVCYDSSASPIRML 610
Query: 558 QRMGRTGRKHDGRIPHIF---KPEVQFVE 583
QRMGRTGRK G I + K E QF +
Sbjct: 611 QRMGRTGRKRAGNIALLLMRGKEEEQFAK 639
>gi|342879845|gb|EGU81079.1| hypothetical protein FOXB_08427 [Fusarium oxysporum Fo5176]
Length = 1091
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 228/567 (40%), Positives = 335/567 (59%), Gaps = 37/567 (6%)
Query: 42 TNFNLCSKANKKPSTCKQSTLDKFFGNL---GPKPQ---GTEEFNEGSSFDESLCHVQID 95
T FN S N +Q+TL F G+L GP+P T F +E H ++D
Sbjct: 87 TGFNRTSSGN-----WRQTTL--FGGSLSSDGPRPSQPAATRVFRADLPREEP-THHEVD 138
Query: 96 AEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
EA +TW+YP N+ +R+YQF+I K +LF+NTLVALPTGLGKT IAA V+ NF+RW
Sbjct: 139 TEAMQTWVYPTNLGAIRNYQFSIVKNSLFNNTLVALPTGLGKTFIAATVMLNFYRWTKKA 198
Query: 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLE 214
K+VF AP++PLV QQ++AC+NI GIP+ T +TG I P R W+++RVFF+TPQ L
Sbjct: 199 KLVFVAPTKPLVAQQVDACYNIAGIPRSETTLLTGDIPPALRVDEWESRRVFFMTPQTLL 258
Query: 215 KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTI 274
DI G K + LVIDEAHRA G YAY + + R+LALTATPGSK +T+
Sbjct: 259 NDISHGYADPKSIALLVIDEAHRAVGEYAYAKVTKLIRRFSKSFRVLALTATPGSKIETV 318
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL 334
Q +IDNL IS E R E D+ YVH R IE + ++ E V ++ + ++P T +L
Sbjct: 319 QEVIDNLGISHCEIRTEDSIDIRQYVHQRNIEQVVLDPSDEMVLVSELFTKALKPMTDKL 378
Query: 335 SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLS 394
S+ + R ++ L+ S+ ++ + + Q + A F L ++ H +LL+
Sbjct: 379 SSQNIWFGRSPMAITAYGLMQSQREWFASRGRHANQGVQHMMRAVFSVLTSIAHSIKLLN 438
Query: 395 SHGIRPAYEML-------EEKLKQGS-FARFMSKNEDIRKVK------LLMQQSISHGAQ 440
HGI+P Y+ L E + ++GS + R + ++ + +++ L + + H
Sbjct: 439 FHGIKPFYDNLVDLRSEQEGRGEKGSKYKRQLIQDSNFQEMMDKISKWLRTEGFVGH--- 495
Query: 441 SPKLSKMLEVLVDHFKTK-DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSS 499
PKL+ + + +++HF + D +RVI+FS +R S DI+ L L+KA+ F+GQ+
Sbjct: 496 -PKLTALADTVLNHFMDQSDNSATRVIVFSEYRDSAEDIVRMLNKHQPLIKASVFVGQAD 554
Query: 500 GKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQR 559
GK +G Q Q + +F+ G +NV+VATSIGEEGLDI +VDL++C+D++ SP+RM+QR
Sbjct: 555 GKRGEGMKQAQQIEAINRFKKGDFNVLVATSIGEEGLDIGQVDLIVCYDSSASPIRMLQR 614
Query: 560 MGRTGRKHDGRIPHIF---KPEVQFVE 583
MGRTGRK G I + K E QF +
Sbjct: 615 MGRTGRKRAGNIVLLLMRGKEEDQFAK 641
>gi|406866127|gb|EKD19167.1| putative ATP-dependent DNA helicase mph1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1189
Score = 404 bits (1039), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/503 (42%), Positives = 308/503 (61%), Gaps = 26/503 (5%)
Query: 91 HVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR 149
HV +D EA KTW+YP N+ +RDYQ++I + LF N LVALPTGLGKT IAA ++YNFFR
Sbjct: 242 HV-LDQEALKTWVYPTNLGAIRDYQYSIVRHGLFHNLLVALPTGLGKTFIAATIMYNFFR 300
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
W +I+F AP++PLV QQ++AC NIVGIP+ T +TG+ P RA W KRVFF+T
Sbjct: 301 WTKHAQIIFVAPTKPLVAQQVDACFNIVGIPRSQTTMLTGEQPPALRAEEWDAKRVFFMT 360
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQ L+ D+ SG K +V LV+DEAHRATGNYAY T + L R+LALTATPG+
Sbjct: 361 PQTLQNDLVSGIADPKKIVLLVVDEAHRATGNYAYTTVVNFLRRFNNSFRVLALTATPGA 420
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
+ +Q +IDNL IS +E R E D+ YVH R I+ + ++ E ++ + ++P
Sbjct: 421 SVEAVQEVIDNLQISKVEIRTEESIDIQQYVHQRNIDQVILDPSDEIIKAKELFSKALQP 480
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFR--QAPPPNLPQIKFGEVEAYFGALITLY 387
++L NRD +L+ +L +R K+ Q ++P + A F L ++
Sbjct: 481 LVTQLCGQNAYYNRDPMSLTTFGMLQARKKWMMDQGRNASIPHKYM--MNALFSILGSVA 538
Query: 388 HIRRLLSSHGIRPAYEMLEEKLKQGS--------FARFMSKNEDIRKVKLLMQQSISH-- 437
H +LL+ HGI P YE ++E + GS + ++++ + +K+ ++ S S
Sbjct: 539 HSIKLLNFHGIGPFYEAIKE-FQHGSEDSKKPSKYKTQITQSPEFKKMMDIIHLSRSKDD 597
Query: 438 GAQSPKLSKMLEVLVDHF---------KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL 488
PKL+ + + +++HF + P +RVI+F+ +R S +I L G L
Sbjct: 598 SVGHPKLTHLCDTILNHFMDAGEGRLGEDAPPSSTRVIVFAEYRDSAEEIARVLNRHGPL 657
Query: 489 VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD 548
V+A+ F+GQ+ K S+G +Q QQ + F+ G +NV+VATSIGEEGLDI +VDL++C+D
Sbjct: 658 VRASVFVGQADSKRSEGMNQAKQQETINFFKTGKFNVLVATSIGEEGLDIGQVDLIVCYD 717
Query: 549 ANVSPLRMIQRMGRTGRKHDGRI 571
A+ SP+RM+QRMGRTGRK G I
Sbjct: 718 ASGSPIRMLQRMGRTGRKRAGHI 740
>gi|348531601|ref|XP_003453297.1| PREDICTED: Fanconi anemia group M protein homolog [Oreochromis
niloticus]
Length = 1965
Score = 404 bits (1039), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/486 (42%), Positives = 299/486 (61%), Gaps = 37/486 (7%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D+ +AK WIYP N P+R+YQ I++ ALF NTLV LPTGLGKT IA+VV+YNF+RW+P
Sbjct: 32 FDSSSAKVWIYPTNYPIREYQLKISEAALFQNTLVCLPTGLGKTFIASVVMYNFYRWYPS 91
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GKIVF AP++PLV QQIEAC+ ++GIPQ ++TG + +R W++KRVFF+TPQV
Sbjct: 92 GKIVFMAPTKPLVAQQIEACYKVMGIPQAHMAELTGSTAAKQRQEVWRSKRVFFLTPQV- 150
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
C+VIDEAH+A GN+AYC I+ L S +Q RILAL+ATPG ++
Sbjct: 151 --------------KCVVIDEAHKALGNHAYCQVIKLLGSQTLQFRILALSATPGGDTKS 196
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+Q +I NL IS +E R+E D+ ++ H R +E + V +G+ +V+ + SR
Sbjct: 197 VQSVISNLLISHIELRSEDSPDIRAHSHQRNVEKVVVPLGEALSAYQTHYLQVLEKFMSR 256
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L ++ ++D +TL+ L+ +RD+FR+ PPP+L + G +E F I+LYH LL
Sbjct: 257 LVQNRVMGHKDLRTLTKYQLILARDQFRKNPPPHLKGPQQGMLEGDFALCISLYHGYELL 316
Query: 394 SSHGIRPAYEMLEEKLKQGSFARFMSKNE--------DIRKVKLLMQQSISHGAQS---- 441
G+R + + + + GS +KNE D K M S G
Sbjct: 317 MQMGLRSLFFYI-QGIMDGSREMSRAKNELQRTPTFMDFYKEMETMFMKPSAGPDEPFIY 375
Query: 442 --PKLSKMLEVLVDHFK----TKDPKH--SRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
PKL K+ EV++ HF+ + P+ +RV+IFS+FR SV++I L L++
Sbjct: 376 SHPKLEKLEEVVLRHFRLWAESSGPQEVSTRVMIFSSFRESVQEIAAMLNRHAPLIRVMT 435
Query: 494 FIGQ-SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
F+GQ S+GK KG +QK Q V+ KFR GG+N +V+T +GEEGLDI EVDL++CFDA +
Sbjct: 436 FMGQASAGKGVKGFTQKEQLEVVHKFRQGGFNTLVSTCVGEEGLDIGEVDLIVCFDAQKN 495
Query: 553 PLRMIQ 558
P+R++Q
Sbjct: 496 PIRLVQ 501
>gi|346322509|gb|EGX92108.1| helicase C-terminal domain protein [Cordyceps militaris CM01]
Length = 1094
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 220/514 (42%), Positives = 315/514 (61%), Gaps = 19/514 (3%)
Query: 87 ESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY 145
E H ++D +A +TW+YP N+ RDYQF+I K +LF+NTLVALPTGLGKT IAA V+
Sbjct: 158 EEPSHHELDKQAMETWVYPTNLGATRDYQFSIVKNSLFNNTLVALPTGLGKTFIAATVML 217
Query: 146 NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205
N++RW GKIVF AP++PLV QQI+AC++I GIP+ T +TG I P R W+ +RV
Sbjct: 218 NYYRWTKKGKIVFVAPTKPLVAQQIDACYSIAGIPRSDTTLLTGDIQPVLREEEWQKRRV 277
Query: 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTA 265
FF+TPQ L D+ G K + +VIDEAHRA G YAY + + R+LALTA
Sbjct: 278 FFMTPQTLLNDLSHGYADPKSICLIVIDEAHRAVGEYAYAKVAKLIRRFSKSFRVLALTA 337
Query: 266 TPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE 325
TPGSK +T+Q IIDNL IS E R E D+ YVH+R IEL+ ++ E + E
Sbjct: 338 TPGSKIETVQEIIDNLGISHCEIRTEDSIDIRQYVHDRNIELVVLDPSDEMNLVCELFSE 397
Query: 326 VIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALIT 385
++P +LSA + + ++S LL S+ ++ ++ Q + A F L +
Sbjct: 398 ALKPLLDKLSAQNIWYGKTPMSISTFGLLQSQKEWMATRGKHVNQGVQFMMRAIFSVLTS 457
Query: 386 LYHIRRLLSSHGIRPAYEML-------EEKLKQGS-FARFM----SKNEDIRKVKLLMQQ 433
L H +LL+ HGI+P Y+ L E+K ++GS + R + S + + K+ M++
Sbjct: 458 LAHSIKLLNFHGIKPFYDNLVDFRSDQEDKGQKGSKYKRQLIEHPSFQDMMNKIASWMKR 517
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTK-DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKAT 492
G PK + + + +++HF + + +RVI+FS +R S DI+ L LVKA+
Sbjct: 518 DGFVG--HPKQTALADAVLNHFMDRGEDSGTRVIVFSEYRDSAEDIVRLLNLHQPLVKAS 575
Query: 493 EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
F+GQ++GK +G Q Q +EKFR+G +NV+VATSIGEEGLDI +VDL++C+D++ S
Sbjct: 576 VFVGQAAGKRGEGMKQAQQIQTIEKFRSGHFNVLVATSIGEEGLDIGQVDLIVCYDSSSS 635
Query: 553 PLRMIQRMGRTGRKHDGRIPHIF---KPEVQFVE 583
P+RM+QRMGRTGRK G I + K E QF +
Sbjct: 636 PIRMLQRMGRTGRKRAGNIVLLLMRGKEEEQFAK 669
>gi|162312400|ref|NP_593348.2| ATP-dependent 3' to 5' DNA helicase [Schizosaccharomyces pombe
972h-]
gi|121919048|sp|Q9UT23.2|MFH1_SCHPO RecName: Full=ATP-dependent DNA helicase mfh1; AltName: Full=FancM
homolog protein 1
gi|85663622|emb|CAB57423.2| ATP-dependent 3' to 5' DNA helicase, FANCM ortholog Fml1
[Schizosaccharomyces pombe]
Length = 834
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/506 (40%), Positives = 310/506 (61%), Gaps = 16/506 (3%)
Query: 77 EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGK 136
E F+ S L H ++D AA+ W+YP+NV RDYQF I + ALF N LVALPTGLGK
Sbjct: 41 EYFDANDSNRYRLQH-ELDESAAQQWVYPINVSFRDYQFNIVQKALFENVLVALPTGLGK 99
Query: 137 TLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR 196
T IAAVV+ N+ RWFP IVF AP++PLV QQ+EAC+ I GIP+ T +++G + T R
Sbjct: 100 TFIAAVVMMNYLRWFPKSYIVFMAPTKPLVTQQMEACYKITGIPKSQTAELSGHVPVTTR 159
Query: 197 ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV 256
+++++ VFFVTPQ + DI+ G C + CLVIDEAHR+TGNYAY + L
Sbjct: 160 NQYYQSRNVFFVTPQTILNDIKHGICDRTRISCLVIDEAHRSTGNYAYVEVVHLLSLSNK 219
Query: 257 QLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316
RILAL+ATPG+K + IQ++ID+L+IS +E R E+ D+S YV ++++ V++ E
Sbjct: 220 NFRILALSATPGNKLEAIQNVIDSLHISRIEIRTENSIDISQYVQKKEVDFFPVDLSAEI 279
Query: 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEV 376
+I +R ++ P +L+ + ++ + ++ ++ ++ F N P + ++
Sbjct: 280 TDIRDRFSSILEPMLQKLNKGNYYRIQNAKDITSFTVVQAKQAFLAMSGQNFPANQKWDI 339
Query: 377 EAYFGALITLYHIRRLLSSHGIRPAYEMLEEK-----LKQGSFARFMSKNEDIR----KV 427
F AL T + LL +HGIRP Y+ L E + + + + + +E+ R +
Sbjct: 340 LNTFDALATFAYPLNLLLNHGIRPFYQKLREVEEECFVGRSGYKKRIINHENYRPLMDDI 399
Query: 428 KLLM--QQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI 485
++L+ Q + H PKL + ++ ++F+ + K +R++IF R S +I+ L
Sbjct: 400 EILLRDQSFVGH----PKLEHLERIVTEYFEKEQTKDTRIMIFVEIRSSAEEILRFLGKF 455
Query: 486 GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
V+ FIGQS+ + + G SQK+Q +++F+ G N ++ATSIGEEGLDI EVD++I
Sbjct: 456 YPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMII 515
Query: 546 CFDANVSPLRMIQRMGRTGRKHDGRI 571
C+DA+ SP+RM+QRMGRTGRK G I
Sbjct: 516 CYDASASPIRMLQRMGRTGRKRKGYI 541
>gi|302661145|ref|XP_003022243.1| hypothetical protein TRV_03646 [Trichophyton verrucosum HKI 0517]
gi|291186180|gb|EFE41625.1| hypothetical protein TRV_03646 [Trichophyton verrucosum HKI 0517]
Length = 1177
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 217/547 (39%), Positives = 314/547 (57%), Gaps = 27/547 (4%)
Query: 49 KANKKPSTCKQSTLDKFFG----NLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIY 104
+ N +P + +Q+TL FG N P T ++ +E H +++EA +TW Y
Sbjct: 287 QTNSQPKSLRQTTL---FGGIASNQSPSQSATSRNWPLATQNEVPTHHALNSEALETWTY 343
Query: 105 PVNVP-VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163
P+N+ RDYQF I+ LF N LVALPTGLGKT IAA V+ N+FRW +IVF AP++
Sbjct: 344 PMNLGRKRDYQFNISYRGLFHNLLVALPTGLGKTFIAATVMLNWFRWTKSAQIVFVAPTK 403
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL 223
PLV QQ++AC NIVGIP+ T +TG + P RA+ W++KRVFF+TPQ L D++SG
Sbjct: 404 PLVAQQVDACFNIVGIPRSQTTMLTGNVPPGLRATEWESKRVFFMTPQTLINDLKSGIAD 463
Query: 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYI 283
K +V LV+DEAHRATG Y Y ++ + R+LALTATPGS +T+Q +ID L I
Sbjct: 464 PKRIVLLVVDEAHRATGAYVYVEVVKFIQRFNTSFRVLALTATPGSTVETVQEVIDGLNI 523
Query: 284 STLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNR 343
S +E R E+ D+ YVH + +E I + ++ + +RP +L I
Sbjct: 524 SRVEIRTEASLDIREYVHAKNVETISFSNSDDMKLCMDQFSKALRPVVEKLRNINAYWGD 583
Query: 344 DYQTLSPVDLLNSRDKFRQAPPPNLPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAY 402
D +L+P L +R K+ +P G V + F L +L H LL HG+ P Y
Sbjct: 584 DPMSLTPFGLTEARKKWIMSPAGRTANWGLKGMVNSIFTVLASLAHAIELLKYHGVGPFY 643
Query: 403 EML---------EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHG--AQSPKLSKMLEVL 451
L + K G + R + + + + + ++ ++ PKL + V+
Sbjct: 644 RNLVSFRDGPTDGSQGKGGKYGRQIMDDANFKSMMTTLRSKMTDADFIGHPKLEYLKRVI 703
Query: 452 VDHF-------KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASK 504
++HF T D +RV++FS+FR S +I+ L ++ F+GQ+S K S+
Sbjct: 704 LNHFLDADTNSHTADSPKTRVMVFSHFRDSAEEIVRVLKKHAPIILPHVFVGQASAKGSE 763
Query: 505 GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTG 564
G QK Q +++KF+ G YN IVATSIGEEGLDI EVDL+IC+D++ SP+RM+QRMGRTG
Sbjct: 764 GMDQKKQLEIIKKFKEGTYNTIVATSIGEEGLDIGEVDLIICYDSSASPIRMLQRMGRTG 823
Query: 565 RKHDGRI 571
RK G++
Sbjct: 824 RKRMGKV 830
>gi|400595357|gb|EJP63162.1| type III restriction enzyme [Beauveria bassiana ARSEF 2860]
Length = 1213
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 233/552 (42%), Positives = 331/552 (59%), Gaps = 28/552 (5%)
Query: 55 STCKQSTL-DKFFGNLGPKPQGTEEFNEGSSFDESL-----CHVQIDAEAAKTWIYPVNV 108
T +Q+TL K G + +PQ E N F L H ++D EA +TW+YP N+
Sbjct: 92 GTYRQTTLFGKPLGEVSSQPQ---ESNATRVFRADLPREEPSHHELDKEAMETWVYPTNL 148
Query: 109 -PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167
+RDYQF+I K +LF+NTLVALPTGLGKT IAA V+ NF+RW GKIVF AP++PLV
Sbjct: 149 GAIRDYQFSIVKNSLFNNTLVALPTGLGKTFIAATVMLNFYRWTKKGKIVFVAPTKPLVA 208
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYL 227
QQI+AC+NI GIP+ T +TG + P R W+ +RVFF+TPQ L D+ G K +
Sbjct: 209 QQIDACYNIAGIPRSETTLLTGDVQPVLREEEWERRRVFFMTPQTLLNDLSHGYADPKSI 268
Query: 228 VCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLE 287
+V+DEAHRATG YAY + + R+LALTATPGSK +T+Q IIDNL IS E
Sbjct: 269 CLIVVDEAHRATGEYAYAKVAKLIRRFSKSFRVLALTATPGSKIETVQEIIDNLGISHCE 328
Query: 288 YRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQT 347
R E D+ YVH+R IE + ++ E ++ E ++P +LSA + + +
Sbjct: 329 IRTEDSIDIRQYVHDRNIEQLVLDPSDEINLVSELFSEALKPLLDKLSAQNIWYGKSPMS 388
Query: 348 LSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEML-- 405
+S LL S++++ ++ Q + A F L +L H +LL+ HGI+P Y+ L
Sbjct: 389 ISAFGLLQSQNEWMATRGKHVNQGVQFMMRAIFSVLTSLAHSIKLLTFHGIKPFYDNLLD 448
Query: 406 -----EEKLKQGS-FARFMSKNEDIR----KVKLLMQQSISHGAQSPKLSKMLEVLVDHF 455
EEK ++GS + R + ++ + K+ M++ G PK + + + +++HF
Sbjct: 449 FRREQEEKGQKGSKYKRQLIEHPSFKDMMDKIASWMKRDGFVG--HPKQTALADTVLNHF 506
Query: 456 KTK-DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAV 514
+ + +RVI+FS +R S DI+ L LVKA+ F+GQ+ GK +G Q Q
Sbjct: 507 MDRGEDSGTRVIVFSEYRDSAEDIVRLLNMHAPLVKASIFVGQAVGKRGEGMKQAQQIET 566
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHI 574
+EKFR G +NV+VATSIGEEGLDI +VDL++C+DA+ SP+RM+QRMGRTGRK G I +
Sbjct: 567 VEKFRNGHFNVLVATSIGEEGLDIGQVDLIVCYDASASPIRMLQRMGRTGRKRAGNIVLL 626
Query: 575 F---KPEVQFVE 583
K E QF +
Sbjct: 627 LMRGKEEDQFAK 638
>gi|322699135|gb|EFY90899.1| ATP-dependent DNA helicase mph1 [Metarhizium acridum CQMa 102]
Length = 1070
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 216/516 (41%), Positives = 311/516 (60%), Gaps = 23/516 (4%)
Query: 87 ESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY 145
E H ++D + +TW+YP N+ +RDYQF+I K +LF+NTLVALPTGLGKT IAA V+
Sbjct: 131 EEPSHHELDRKEMETWVYPTNLGAIRDYQFSIVKNSLFNNTLVALPTGLGKTFIAATVML 190
Query: 146 NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205
NF+RW KIVF AP++PL QQI+AC+NIVGIP+ T +TG I P RA W+ +RV
Sbjct: 191 NFYRWTRSAKIVFVAPTKPLAAQQIDACYNIVGIPRSHTTLLTGDIQPALRADEWEKRRV 250
Query: 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTA 265
FF+TPQ L D+ G K + LVIDEAHRA G YAY + + R+LALTA
Sbjct: 251 FFMTPQTLLNDLSHGYAEPKSIALLVIDEAHRAVGEYAYAKVTKLIRRFSKSFRVLALTA 310
Query: 266 TPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE 325
TPGSK +T+Q +IDNL IS E R E D+ YVH R +E + +E E ++ E
Sbjct: 311 TPGSKIETVQEVIDNLGISHCEIRTEDSIDIRQYVHQRNVEKMVLEPSDEMNLVSELFTE 370
Query: 326 VIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALIT 385
++P +L + R+ ++ L+ ++ ++ + Q + A FG L +
Sbjct: 371 ALKPLVDKLGSQNTYYGRNPMAMTTYGLMQAQKEWFATRGRHANQGVQFMMRAIFGVLTS 430
Query: 386 LYHIRRLLSSHGIRPAYEML-------EEKLKQGS-FARFMSKNEDIRKVKLLMQQSISH 437
L H +LL+ HGI+P Y+ + E K ++GS + R + ++ +K M IS
Sbjct: 431 LAHSIKLLNFHGIKPFYDNMKDFRSEQEGKGEKGSKYKRQLIEHSSFQK----MMDHISR 486
Query: 438 GAQS------PKLSKMLEVLVDHFKTK-DPKHSRVIIFSNFRGSVRDIMNALATIGDLVK 490
++ PKL+ +++ +++HF + + +RVI+FS +R S DI+ L L+K
Sbjct: 487 WLRADGFVGHPKLAALVDCVLNHFMDQGEGSATRVIVFSEYRDSAEDIVCQLNKHQPLLK 546
Query: 491 ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
A+ F+GQ+ GK +G Q Q +EKFR G +NV+VATSIGEEGLDI +VDL++C+D++
Sbjct: 547 ASVFVGQADGKRGEGMKQAQQIQTIEKFRKGEFNVLVATSIGEEGLDIGQVDLIVCYDSS 606
Query: 551 VSPLRMIQRMGRTGRKHDGRIPHIF---KPEVQFVE 583
SP+RM+QRMGRTGRK G I + K E QF +
Sbjct: 607 ASPIRMLQRMGRTGRKRAGNIVLLLMRGKEEDQFAK 642
>gi|46107330|ref|XP_380724.1| hypothetical protein FG00548.1 [Gibberella zeae PH-1]
Length = 1092
Score = 401 bits (1030), Expect = e-108, Method: Compositional matrix adjust.
Identities = 228/567 (40%), Positives = 328/567 (57%), Gaps = 37/567 (6%)
Query: 42 TNFNLCSKANKKPSTCKQSTLDKFFG----NLGPKPQ--GTEEFNEGSSFDESLCHVQID 95
T N S N +Q+TL FG N GP+P + E H ++D
Sbjct: 88 TGLNRASSGN-----WRQTTL---FGGSVANDGPRPSLPTSARVFRADLPREEPTHHEVD 139
Query: 96 AEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
EA KTW++P N+ RDYQF+I K +LF+NTLVALPTGLGKT IAA V+ NF+RW +
Sbjct: 140 HEAMKTWVFPTNLGQTRDYQFSIVKNSLFNNTLVALPTGLGKTFIAASVMLNFYRWTKNA 199
Query: 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLE 214
KIVF AP++PLV QQ+ AC+ I GIP+ T +TG+I P R W +RVFF+TPQ L
Sbjct: 200 KIVFVAPTKPLVAQQVTACYGIAGIPRSETTLLTGEIPPLLRVDEWAARRVFFMTPQTLL 259
Query: 215 KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTI 274
DI G K +V LVIDEAHRATG YAY + + R+LALTATPGSK +T+
Sbjct: 260 NDISHGYADPKSIVLLVIDEAHRATGEYAYAKVTKLIRRFSKSFRVLALTATPGSKIETV 319
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL 334
Q +IDNL IS E R E D+ YVH+R IE + ++ E V ++ + ++P T +L
Sbjct: 320 QEVIDNLGISHCEIRTEDSIDIRQYVHSRTIEQVVLDPSDEMVLVSELFTKALKPMTDKL 379
Query: 335 SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLS 394
S+ + R ++ L+ S+ ++ Q + A F L ++ H +LL+
Sbjct: 380 SSQNIWYGRSPMAMTTFGLMKSQKEWFDTGGRRANQGVQHMMRAVFTVLTSIAHSIKLLN 439
Query: 395 SHGIRPAYEML-------EEKLKQGS-FARFMSKNEDIRKVKLLMQQSISHGAQS----- 441
HGI+P Y+ L E K ++GS + R + ++ + ++ M IS ++
Sbjct: 440 FHGIKPFYDNLVDMRSEQEGKGEKGSKYRRQLVQDSNFQE----MMDRISKWLRTDGFVG 495
Query: 442 -PKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSS 499
PKL+ + + +++HF +RVI+FS +R S DI+ L L+KA F+GQ+
Sbjct: 496 HPKLAALADTVLNHFMDNATNTATRVIVFSEYRDSAEDIVRMLNKHRPLIKARVFVGQAD 555
Query: 500 GKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQR 559
K +G Q Q +++F+ G +NV+VATSIGEEGLDI +VDL++C+D++ SP+RM+QR
Sbjct: 556 SKRGEGMKQAQQIEAIDRFKEGEFNVLVATSIGEEGLDIGQVDLIVCYDSSASPIRMLQR 615
Query: 560 MGRTGRKHDGRIPHIF---KPEVQFVE 583
MGRTGRK +G+I + K E QF +
Sbjct: 616 MGRTGRKQEGKIVLLLMRGKEEEQFAK 642
>gi|326483398|gb|EGE07408.1| helicase domain-containing protein [Trichophyton equinum CBS
127.97]
Length = 1176
Score = 401 bits (1030), Expect = e-108, Method: Compositional matrix adjust.
Identities = 218/547 (39%), Positives = 314/547 (57%), Gaps = 27/547 (4%)
Query: 49 KANKKPSTCKQSTLDKFFG----NLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIY 104
+ N + + +Q+TL FG N P T +S +E H +++EA +TW Y
Sbjct: 285 QTNSQQKSLRQTTL---FGGIASNQSPSQSTTSRNWPLASQNEVPTHHTLNSEALETWTY 341
Query: 105 PVNVP-VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163
P+N+ RDYQF I+ LF N LVALPTGLGKT IAA V+ N+FRW +IVF AP++
Sbjct: 342 PMNLGRKRDYQFNISYHGLFHNLLVALPTGLGKTFIAATVMLNWFRWTKSAQIVFVAPTK 401
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL 223
PLV QQ++AC NIVGIP+ T +TG + P RA+ W++KRVFF+TPQ L D++SG
Sbjct: 402 PLVAQQVDACFNIVGIPRSQTTMLTGNVPPGLRATEWESKRVFFMTPQTLINDLKSGIAD 461
Query: 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYI 283
K +V LV+DEAHRATG Y Y +R + R+LALTATPGS +T+Q +ID L I
Sbjct: 462 PKRIVLLVVDEAHRATGAYVYVEVVRFIQRFNTSFRVLALTATPGSTVETVQEVIDGLNI 521
Query: 284 STLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNR 343
S +E R E+ D+ YVH + +E I + ++ + +RP +L I
Sbjct: 522 SRVEIRTEASLDIREYVHAKNVETISFSNSDDMKLCMDQFSKALRPVVEKLRNINAYWGD 581
Query: 344 DYQTLSPVDLLNSRDKFRQAPPPNLPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAY 402
D +L+P L +R K+ +P G V + F L +L H LL HG+ P Y
Sbjct: 582 DPMSLTPFGLTEARKKWIMSPAGRTANWGLKGMVNSIFTVLASLAHAIELLKYHGVGPFY 641
Query: 403 EML---------EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHG--AQSPKLSKMLEVL 451
L + K G + R + + + + + +++ ++ PKL + V+
Sbjct: 642 RNLVSFRDGPTDGSQGKGGKYGRQIMDDANFKSMMTMLRSKMTDADFIGHPKLEYLKRVI 701
Query: 452 VDHF-------KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASK 504
++HF T D +RV++FS+FR S +I+ L ++ F+GQ+S K S+
Sbjct: 702 LNHFLDADTNSHTTDSPKTRVMVFSHFRDSAEEIVRVLKKHSPIILPHVFVGQASAKGSE 761
Query: 505 GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTG 564
G QK Q +++KF+ G YN IVATSIGEEGLDI EVDL+IC+D++ SP+RM+QRMGRTG
Sbjct: 762 GMDQKKQLEIIKKFKEGTYNTIVATSIGEEGLDIGEVDLIICYDSSASPIRMLQRMGRTG 821
Query: 565 RKHDGRI 571
RK G++
Sbjct: 822 RKRMGKV 828
>gi|302511351|ref|XP_003017627.1| hypothetical protein ARB_04509 [Arthroderma benhamiae CBS 112371]
gi|291181198|gb|EFE36982.1| hypothetical protein ARB_04509 [Arthroderma benhamiae CBS 112371]
Length = 1178
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 216/547 (39%), Positives = 315/547 (57%), Gaps = 27/547 (4%)
Query: 49 KANKKPSTCKQSTLDKFFG----NLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIY 104
+ N +P + +Q+TL FG N P T ++ +E H +++EA +TW Y
Sbjct: 288 QTNSQPKSLRQTTL---FGGIASNQSPSQSATSRNWPLATQNEVPTHHALNSEALETWTY 344
Query: 105 PVNVP-VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163
P+N+ RDYQF I+ LF N LVALPTGLGKT IAA V+ N+FRW +IVF AP++
Sbjct: 345 PMNLGRKRDYQFNISYRGLFHNLLVALPTGLGKTFIAATVMLNWFRWTKFAQIVFVAPTK 404
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL 223
PLV QQ++AC NIVGIP+ T +TG + P RA+ W++KRVFF+TPQ L D++SG
Sbjct: 405 PLVAQQVDACFNIVGIPRSQTTMLTGNVPPGLRATEWESKRVFFMTPQTLINDLKSGIAD 464
Query: 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYI 283
K +V LV+DEAHRATG Y Y ++ + R+LALTATPGSK +T+Q +ID L I
Sbjct: 465 PKRIVLLVVDEAHRATGAYVYVEVVKFIQRFNTSFRVLALTATPGSKVETVQEVIDGLNI 524
Query: 284 STLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNR 343
S +E R E+ D+ YVH + +E I + ++ + ++P +L I
Sbjct: 525 SRVEIRTEASLDIREYVHAKNVETISFSNSDDMKLCMDQFSKALKPVVEKLRNINAYWGD 584
Query: 344 DYQTLSPVDLLNSRDKFRQAPPPNLPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAY 402
D +L+P L +R K+ +P V + F L +L H LL HG+ P Y
Sbjct: 585 DPMSLTPFGLTEARKKWIMSPAGRTANWGLKAMVNSIFTVLASLAHAIELLKYHGVGPFY 644
Query: 403 EML---------EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGA--QSPKLSKMLEVL 451
L + K G + R + + + + + ++ ++ PKL + V+
Sbjct: 645 RNLVSFRDGPTDGSQGKGGKYGRQIMDDANFKSMMTTLRSKMTDAEFIGHPKLEYLKRVI 704
Query: 452 VDHF-------KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASK 504
++HF T D + +RV++FS+FR S +I+ L ++ F+GQ+S K S+
Sbjct: 705 LNHFLDADTNSHTADSRKTRVMVFSHFRDSAEEIVRVLKKHAPIILPHVFVGQASAKGSE 764
Query: 505 GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTG 564
G QK Q +++KF+ G YN IVATSIGEEGLDI EVDL+IC+D++ SP+RM+QRMGRTG
Sbjct: 765 GMDQKKQLEIIKKFKEGTYNTIVATSIGEEGLDIGEVDLIICYDSSASPIRMLQRMGRTG 824
Query: 565 RKHDGRI 571
RK G++
Sbjct: 825 RKRMGKV 831
>gi|322708815|gb|EFZ00392.1| ATP-dependent DNA helicase mph1 [Metarhizium anisopliae ARSEF 23]
Length = 1077
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 216/516 (41%), Positives = 310/516 (60%), Gaps = 23/516 (4%)
Query: 87 ESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY 145
E H ++D + +TW+YP N+ +RDYQF+I K +LF+NTLVALPTGLGKT IAA V+
Sbjct: 138 EEPSHHELDRKEMETWVYPTNLGAIRDYQFSIVKNSLFNNTLVALPTGLGKTFIAATVML 197
Query: 146 NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205
NF+RW KIVF AP++PL QQI+AC+NIVGIP+ T +TG I P RA W+ +RV
Sbjct: 198 NFYRWTKSAKIVFVAPTKPLAAQQIDACYNIVGIPRSHTTLLTGDIQPALRAEEWEKRRV 257
Query: 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTA 265
FF+TPQ L D+ G K + LVIDEAHRA G YAY + + R+LALTA
Sbjct: 258 FFMTPQTLLNDLSHGYAEPKSIALLVIDEAHRAVGEYAYAKVTKLIRRFSKSFRVLALTA 317
Query: 266 TPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE 325
TPGSK +T+Q +IDNL IS E R E D+ YVH R IE + ++ E ++ E
Sbjct: 318 TPGSKIETVQEVIDNLGISHCEIRTEESIDIRQYVHERNIEKMVLDPSDEMNLVSELFTE 377
Query: 326 VIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALIT 385
++P +L + + R+ +S L+ + ++ + Q + A F L +
Sbjct: 378 ALKPLVDKLGSQNIYYGRNPMAMSTYGLMQVQKEWFATRGRHANQGVQFMMRAIFSVLTS 437
Query: 386 LYHIRRLLSSHGIRPAYEML-------EEKLKQGS-FARFMSKNEDIRKVKLLMQQSISH 437
L H +LL+ HGI+P Y+ + E K ++GS + R + ++ +K M IS
Sbjct: 438 LAHSIKLLNFHGIKPFYDNMKDFRSEQEGKGEKGSKYKRQLIEHSSFQK----MMDHISR 493
Query: 438 GAQS------PKLSKMLEVLVDHFKTK-DPKHSRVIIFSNFRGSVRDIMNALATIGDLVK 490
++ PKL+ +++ +++HF + + +RVI+FS +R S DI+ L L+K
Sbjct: 494 WLRTDGFVGHPKLAALVDCVLNHFMDQGEGSTTRVIVFSEYRDSAEDIVCQLNKHQPLLK 553
Query: 491 ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
A+ F+GQ+ GK +G Q Q +EKFR G +NV+VATSIGEEGLDI +VDL++C+D++
Sbjct: 554 ASVFVGQADGKRGEGMKQAQQIQTIEKFRKGEFNVLVATSIGEEGLDIGQVDLIVCYDSS 613
Query: 551 VSPLRMIQRMGRTGRKHDGRIPHIF---KPEVQFVE 583
SP+RM+QRMGRTGRK G I + K E QF +
Sbjct: 614 ASPIRMLQRMGRTGRKRAGNIVLLLMRGKEEDQFAK 649
>gi|196007514|ref|XP_002113623.1| hypothetical protein TRIADDRAFT_26257 [Trichoplax adhaerens]
gi|190584027|gb|EDV24097.1| hypothetical protein TRIADDRAFT_26257 [Trichoplax adhaerens]
Length = 642
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/498 (41%), Positives = 301/498 (60%), Gaps = 35/498 (7%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D ++ WIYP N P+RDYQ+ IT+ ALF NTLV LPTGLGKT IAAVV+YNFFRW+P+
Sbjct: 14 FDVDSGNNWIYPTNYPLRDYQYNITQKALFKNTLVTLPTGLGKTFIAAVVMYNFFRWYPN 73
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GK+VF AP++PLV QQ EAC+N+ GIP++ TI +TG ++P KR W++KRVFF+TPQVL
Sbjct: 74 GKVVFMAPTKPLVAQQEEACYNVTGIPRDTTIRLTGTMNPDKRRQVWQSKRVFFLTPQVL 133
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
+ D+ TC +VCLV+DEAHRA GN+AYC IR L + R+LAL+ATPG Q
Sbjct: 134 QNDLNRETCCANDIVCLVVDEAHRALGNHAYCQVIRGLCNYTRNFRVLALSATPGDDIQN 193
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+Q +I NL IS +E R+E D+ Y H R I+ I V + +E I + ++ R
Sbjct: 194 VQKVIANLLISDVEIRSEESIDIRPYTHKRSIQKIVVPLSEELKAIKAKFLTILGDVIER 253
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L +L + + LS +L +R++FR+ Q G +E F I+LYH LL
Sbjct: 254 LHRQQVLYSNQVERLSKYQILKAREQFRKGTSGFSTQ--RGSIEGDFALAISLYHAYELL 311
Query: 394 SSHGIRPAYEM---LEEKLKQGSFARF-MSKNEDIRKV--KLLMQQSISHGAQ------- 440
G++ Y+ + + K S R ++KN ++ +L + + S+ +Q
Sbjct: 312 IQQGMKSFYQFAKGIVDNSKSTSKVRGNLAKNRIFIEIMDELNFKFNRSYNSQLTPKSKT 371
Query: 441 ---------SPKLSKMLEVLVDHFKT---------KDPKHSRVIIFSNFRGSVRDIMNAL 482
PKLSK+ ++++ HF+ + +R++IF+ +R SV +I + L
Sbjct: 372 TNVQFLLNSHPKLSKLRDIVIGHFENFIVPDSNSGQSSLKTRIMIFAQYRDSVVEITDLL 431
Query: 483 ATIGDLVKATEFIGQ--SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIME 540
VK F GQ S GK+S+G SQK Q V++ FR GGYN +V+T +GEEGLDI +
Sbjct: 432 KHYSPTVKVMSFTGQATSGGKSSRGLSQKEQLKVIQDFRRGGYNTLVSTCVGEEGLDIGD 491
Query: 541 VDLVICFDANVSPLRMIQ 558
VDL+IC+D+N SP+R++Q
Sbjct: 492 VDLIICYDSNTSPIRLVQ 509
>gi|326476158|gb|EGE00168.1| ATP-dependent DNA helicase [Trichophyton tonsurans CBS 112818]
Length = 1176
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 217/547 (39%), Positives = 313/547 (57%), Gaps = 27/547 (4%)
Query: 49 KANKKPSTCKQSTLDKFFG----NLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIY 104
+ N + + +Q+TL FG N P T +S +E H +++EA +TW Y
Sbjct: 285 QTNSQQKSLRQTTL---FGGIASNQSPSQSTTSRNWPLASQNEVPTHHTLNSEALETWTY 341
Query: 105 PVNVP-VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163
P+N+ RDYQF I+ LF N LVALPTGLGKT IAA V+ N+FRW +IVF AP++
Sbjct: 342 PMNLGRKRDYQFNISYHGLFHNLLVALPTGLGKTFIAATVMLNWFRWTKSAQIVFVAPTK 401
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL 223
PLV QQ++AC NIVGIP+ T +TG + P RA+ W +KRVFF+TPQ L D++SG
Sbjct: 402 PLVAQQVDACFNIVGIPRSQTTMLTGNVPPGLRATEWDSKRVFFMTPQTLINDLKSGIAD 461
Query: 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYI 283
K +V LV+DEAHRATG Y Y ++ + R+LALTATPGS +T+Q +ID L I
Sbjct: 462 PKRIVLLVVDEAHRATGAYVYVEVVKFIQRFNTSFRVLALTATPGSTVETVQEVIDGLNI 521
Query: 284 STLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNR 343
S +E R E+ D+ YVH + +E I + ++ + +RP +L I
Sbjct: 522 SRVEIRTEASLDIREYVHAKNVETISFSNSDDMKLCMDQFSKALRPVVEKLRNINAYWGD 581
Query: 344 DYQTLSPVDLLNSRDKFRQAPPPNLPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAY 402
D +L+P L +R K+ +P G V + F L +L H LL HG+ P Y
Sbjct: 582 DPMSLTPFGLTEARKKWIMSPAGRTANWGLKGMVNSIFTVLASLAHAIELLKYHGVGPFY 641
Query: 403 EML---------EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHG--AQSPKLSKMLEVL 451
L + K G + R + + + + + +++ ++ PKL + V+
Sbjct: 642 RNLVSFRDGPTDGSQGKGGKYGRQIMDDANFKSMMTMLRSKMTDADFIGHPKLEYLKRVI 701
Query: 452 VDHF-------KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASK 504
++HF T D +RV++FS+FR S +I+ L ++ F+GQ+S K S+
Sbjct: 702 LNHFLDADTNSHTTDSPKTRVMVFSHFRDSAEEIVRVLKKHSPIILPHVFVGQASAKGSE 761
Query: 505 GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTG 564
G QK Q +++KF+ G YN IVATSIGEEGLDI EVDL+IC+D++ SP+RM+QRMGRTG
Sbjct: 762 GMDQKKQLEIIKKFKEGTYNTIVATSIGEEGLDIGEVDLIICYDSSASPIRMLQRMGRTG 821
Query: 565 RKHDGRI 571
RK G++
Sbjct: 822 RKRMGKV 828
>gi|121703165|ref|XP_001269847.1| helicase C-terminal domain protein [Aspergillus clavatus NRRL 1]
gi|189082419|sp|A1CS00.1|MPH1_ASPCL RecName: Full=ATP-dependent DNA helicase mph1
gi|119397990|gb|EAW08421.1| helicase C-terminal domain protein [Aspergillus clavatus NRRL 1]
Length = 1119
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 231/598 (38%), Positives = 335/598 (56%), Gaps = 49/598 (8%)
Query: 6 IPIEINGDDDDEFDWEAAVREIDTACQSS--KPSTSN-STNFNLCSKANKKPSTCKQSTL 62
+P +++ DD FD + ++ + Q++ P S STN +P +QSTL
Sbjct: 206 VPFDVDDIPDDAFDSDLSLSPPRSNSQAALRGPVQSQFSTN---------RPLGLRQSTL 256
Query: 63 DKFFGNLGPK-----PQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNV-PVRDYQFA 116
FG P+G + F+ +E+ H ++D EA TWIYP N+ RDYQF
Sbjct: 257 ---FGMTARASEASIPRGEQVFSPPDK-NEAPTHHKLDEEALNTWIYPTNLGKTRDYQFN 312
Query: 117 ITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNI 176
IT+ LF N LVALPTGLGKT IAA ++ N++RW +I+F AP++PLV QQI AC I
Sbjct: 313 ITQRGLFHNLLVALPTGLGKTFIAATIMLNWYRWTKSSQIIFVAPTKPLVSQQISACFGI 372
Query: 177 VGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAH 236
GIP+ T +TG+ +P RA WK KRVFF+TPQ L D++SG K +V LV+DEAH
Sbjct: 373 AGIPRSQTTMLTGEAAPGIRAEEWKAKRVFFMTPQTLINDLKSGIADPKRIVLLVVDEAH 432
Query: 237 RATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDV 296
RATG YAY ++ + R+LALTATPGS +++Q +ID L I+ +E R E D+
Sbjct: 433 RATGGYAYVEVVKFIKRYNKSFRVLALTATPGSTVESVQAVIDGLDIAKVEIRTEQSLDI 492
Query: 297 SSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNS 356
YVH R ++ + E V + ++P +L ++ +D L+P L +
Sbjct: 493 REYVHARNTDVQTFQNSDEMVLCMDLFSRTLQPLVDQLCSLNAYWGKDPMALTPFGLTKA 552
Query: 357 RDKFRQAPPPNLPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAYEML------EEKL 409
R ++ + G+V A F L +L H LL HGI P Y L +
Sbjct: 553 RQQWMLSDAGRNANYGLKGKVNAIFTVLASLAHAIDLLKYHGITPFYRHLVHFRSNTDGQ 612
Query: 410 KQGSFARFMSKNEDIRKVKLLMQ------QSISHGAQSPKLSKMLEVLVDHF------KT 457
K G + R + ++E +K+ +Q + I H PKL + +V+++HF
Sbjct: 613 KGGKYQRQIVQDESFKKLMNHLQPWTKNPEFIGH----PKLEYLKQVVLNHFMDAGEGSG 668
Query: 458 KDPKH----SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
D H +R+++F++FR S +I+ L L++ F+GQSS K S+G QK Q +
Sbjct: 669 ADGNHTRSATRIMVFAHFRDSAEEIVRVLKRYEPLIRPHVFVGQSSAKGSEGMDQKTQLS 728
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+++KF+ G YN IVATSIGEEGLDI EVDL++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 729 IVQKFKKGDYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNI 786
>gi|408399476|gb|EKJ78577.1| hypothetical protein FPSE_01243 [Fusarium pseudograminearum CS3096]
Length = 1093
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 227/566 (40%), Positives = 326/566 (57%), Gaps = 37/566 (6%)
Query: 42 TNFNLCSKANKKPSTCKQSTLDKFFGNLG------PKPQGTEEFNEGSSFDESLCHVQID 95
T N S N +Q+TL F G + P+P F +E H ++D
Sbjct: 88 TGLNRASSGN-----WRQTTL--FGGPVANDSPRPPQPTSARVFRADLPREEP-THHEVD 139
Query: 96 AEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
EA KTW++P N+ RDYQF+I K +LF+NTLVALPTGLGKT IAA V+ NF+RW +
Sbjct: 140 HEAMKTWVFPTNLGKTRDYQFSIVKNSLFNNTLVALPTGLGKTFIAASVMLNFYRWTKNA 199
Query: 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLE 214
KIVF AP++PLV QQ+ AC+ I GIP+ T +TG+I P R W +RVFF+TPQ L
Sbjct: 200 KIVFVAPTKPLVAQQVTACYGIAGIPRSETTLLTGEIPPLLRVDEWAARRVFFMTPQTLL 259
Query: 215 KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTI 274
DI G K +V LVIDEAHRATG YAY + + R+LALTATPGSK +T+
Sbjct: 260 NDISHGYADPKSIVLLVIDEAHRATGEYAYAKVTKLIRRFSKSFRVLALTATPGSKIETV 319
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL 334
Q +IDNL IS E R E D+ YVH+R IE + ++ E V ++ + ++P T +L
Sbjct: 320 QEVIDNLGISHCEIRTEDSIDIRQYVHSRTIEQVVLDPSDEMVLVSELFTKALKPMTDKL 379
Query: 335 SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLS 394
S+ + R ++ L+ S+ ++ Q + A F L ++ H +LL+
Sbjct: 380 SSQNIWFGRSPMAMTTFGLMQSQKEWFNTGGRRANQGVQHMMRAVFTVLTSIAHSIKLLN 439
Query: 395 SHGIRPAYEML-------EEKLKQGS-FARFMSKNEDIRKVKLLMQQSISHGAQS----- 441
HGI+P Y+ L E K ++GS + R + ++ + ++ M IS ++
Sbjct: 440 FHGIKPFYDNLADMRSEQEGKGEKGSKYKRQLVQDSNFQE----MMDRISKWLRTDGFVG 495
Query: 442 -PKLSKMLEVLVDHFKTKDPK-HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSS 499
PKL+ + + +++HF +RVI+FS +R S DI+ L L+KA F+GQ+
Sbjct: 496 HPKLAALADTVLNHFMDNAANTATRVIVFSEYRDSAEDIVRMLNKHRPLIKARVFVGQAD 555
Query: 500 GKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQR 559
K +G Q Q + +F+ G +NV+VATSIGEEGLDI +VDL++C+D++ SP+RM+QR
Sbjct: 556 SKRGEGMKQAQQIEAIGRFKEGEFNVLVATSIGEEGLDIGQVDLIVCYDSSASPIRMLQR 615
Query: 560 MGRTGRKHDGRIPHIF---KPEVQFV 582
MGRTGRK +G+I + K E QF
Sbjct: 616 MGRTGRKQEGKIVLLLMRGKEEEQFA 641
>gi|327297022|ref|XP_003233205.1| ATP-dependent DNA helicase [Trichophyton rubrum CBS 118892]
gi|326464511|gb|EGD89964.1| ATP-dependent DNA helicase [Trichophyton rubrum CBS 118892]
Length = 1181
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 216/547 (39%), Positives = 313/547 (57%), Gaps = 27/547 (4%)
Query: 49 KANKKPSTCKQSTLDKFFG----NLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIY 104
+ N + + +Q+TL FG N P T +S +E H +++EA +TW Y
Sbjct: 286 QTNSQQKSLRQTTL---FGGIANNQSPSQPATSRNWPLASQNEVPTHHALNSEALETWTY 342
Query: 105 PVNVP-VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163
PVN+ RDYQF I+ LF N LVALPTGLGKT IAA V+ N+FRW +IVF AP++
Sbjct: 343 PVNLGRKRDYQFNISYRGLFHNLLVALPTGLGKTFIAATVMLNWFRWTKFAQIVFVAPTK 402
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL 223
PLV QQ++AC N+ GIP+ T +TG + P RA+ W++KRVFF+TPQ L D++SG
Sbjct: 403 PLVAQQVDACFNVAGIPRSQTTMLTGNVPPGLRATEWESKRVFFMTPQTLINDLKSGIAD 462
Query: 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYI 283
K +V LV+DEAHRATG Y Y ++ + R+LALTATPGS +T+Q +ID L I
Sbjct: 463 PKRVVLLVVDEAHRATGAYVYVEVVKFIQRFNTSFRVLALTATPGSTVETVQEVIDGLNI 522
Query: 284 STLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNR 343
S +E R ES D+ YVH + +E I + ++ + +RP +L I
Sbjct: 523 SRVEIRTESSLDIREYVHAKNVETISFSNSDDMKLCMDQFSKALRPMVEKLRNINAYWGD 582
Query: 344 DYQTLSPVDLLNSRDKFRQAPPPNLPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAY 402
D +L+P L +R K+ +P G V + F L +L H LL HG+ P Y
Sbjct: 583 DPMSLTPFGLTEARKKWIMSPAGRTANWGLKGMVNSIFTVLASLAHAIELLKYHGVGPFY 642
Query: 403 EML---------EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHG--AQSPKLSKMLEVL 451
L + K G + R + + + + + +++ ++ PKL + V+
Sbjct: 643 RNLVSFRDGSTDGSQGKGGKYGRQVMDDANFKSMMTMLRSKMTDADFVGHPKLEYLKRVI 702
Query: 452 VDHF-------KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASK 504
++HF T + +RV++FS+FR S +I+ L ++ F+GQ+S K S+
Sbjct: 703 LNHFLDADTNSHTANSPKTRVMVFSHFRDSAEEIVRVLKKHAPIILPHVFVGQASAKGSE 762
Query: 505 GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTG 564
G QK Q +++KF+ G YN IVATSIGEEGLDI EVDL+IC+D++ SP+RM+QRMGRTG
Sbjct: 763 GMDQKKQLEIIKKFKEGTYNTIVATSIGEEGLDIGEVDLIICYDSSASPIRMLQRMGRTG 822
Query: 565 RKHDGRI 571
RK G++
Sbjct: 823 RKRTGKV 829
>gi|225562910|gb|EEH11189.1| helicase C-terminal domain-containing protein [Ajellomyces
capsulatus G186AR]
Length = 1142
Score = 398 bits (1022), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/508 (41%), Positives = 303/508 (59%), Gaps = 20/508 (3%)
Query: 84 SFDESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAV 142
S +E H ++D+ A K+W+YP N+ R+YQF IT+ ALF N LVALPTGLGKT IAA
Sbjct: 298 SRNEPPTHHRLDSTAIKSWVYPTNLGKKREYQFNITQRALFHNLLVALPTGLGKTFIAAT 357
Query: 143 VIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202
V+ N+FRW D +IVF AP++PLV QQI AC I GIP+ T+ +TG P RA+ W++
Sbjct: 358 VMLNWFRWTTDAQIVFVAPTKPLVSQQIVACFGIAGIPRSQTVMLTGSTGPAIRAAEWQS 417
Query: 203 KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILA 262
KRVFF+TPQ L D+++G K +V LVIDEAHRATG YAY ++ L R+LA
Sbjct: 418 KRVFFMTPQTLVNDLKNGHADPKRIVLLVIDEAHRATGGYAYVEVVKFLQQYNTSFRVLA 477
Query: 263 LTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNR 322
LTATPGS + +Q +ID L IS +E R E D+ YVH+R IE+ + ++ + +
Sbjct: 478 LTATPGSSVEAVQEVIDGLNISKVEIRTEESLDIREYVHSRNIEIETFDYSEDMIMCMDL 537
Query: 323 IWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP-NLPQIKFGEVEAYFG 381
+ ++P +L + +D TL+P L +R + ++P N G V A F
Sbjct: 538 FGKSLQPVLDKLRSQNAHWAKDPMTLTPYGLTVARKDWLKSPAGRNANNGLKGMVHAIFS 597
Query: 382 ALITLYHIRRLLSSHGIRPAYEML---EEKLKQGS--FARFMSKNEDIRKV--KLLMQQS 434
L +L H LL HGI P Y L + L G + R + +E+ + + +L M +
Sbjct: 598 VLSSLAHAIDLLKYHGIGPFYRNLVSFQNALGAGGSKYQRQIVDDENFKTLMHRLRMWTN 657
Query: 435 ISHGAQSPKLSKMLEVLVDHF-----------KTKDPKHSRVIIFSNFRGSVRDIMNALA 483
PKL + V+++HF + P +R+++F++FR S +I+ L
Sbjct: 658 NEDFIGHPKLEFLKRVVLNHFMDAEKDGDDSLANRHPSSTRIMVFAHFRDSAEEIVRVLK 717
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
G +++ F+GQ++ K S G QK Q ++EKF+ G YN IVATS+GEEGLDI EVDL
Sbjct: 718 RHGPMIRPHVFVGQAAAKGSGGMDQKTQLDIIEKFKEGTYNTIVATSVGEEGLDIGEVDL 777
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRI 571
++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 778 IVCYDSSASPIRMLQRMGRTGRKRRGNI 805
>gi|358341274|dbj|GAA27796.2| fanconi anemia group M protein [Clonorchis sinensis]
Length = 1444
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 219/533 (41%), Positives = 305/533 (57%), Gaps = 55/533 (10%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D EA +TWIYP+NV +RDYQF IT+ L+ NTLV LPTGLGKTL+AAVV+YNF RW+P
Sbjct: 103 FDTEAGRTWIYPLNVNIRDYQFHITEQCLYKNTLVCLPTGLGKTLVAAVVMYNFLRWYPH 162
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GK VF AP+RPLV QQ+ AC ++G+ + I++TG TKR W R FF+TPQVL
Sbjct: 163 GKSVFMAPTRPLVAQQLTACGRLLGLSSDTAIELTGSTPQTKRQRLWTNLRAFFLTPQVL 222
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQ---LRILALTATPGSK 270
D+Q+G C L L+ DEAH+ATGN+AYC IR L + P R++AL+ATP S
Sbjct: 223 MNDLQAGVCPSADLRLLIFDEAHKATGNHAYCQVIRLLTAPPHNHRLFRVVALSATPASD 282
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
Q +Q I+ NL IS LE R ++ DV Y +R++E I V +G E +++ E R
Sbjct: 283 IQGVQTILANLLISHLELRTDTSVDVKRYTQHRQLETIVVPLGPELNRFRSQLIECARIP 342
Query: 331 TSRLSAIGLLQ----NRDYQTLSPVDLLNSRDKFRQAPPP-NLPQIKFGEVEAYFGALIT 385
RL G L+ + + ++ ++ +R+++ P L I G V+ FG++I
Sbjct: 343 LERLRMRGALRQGMGDLRPERIAKFTVIKAREEWSSGPNAVQLSSIDAGAVQCDFGSVIC 402
Query: 386 LYHIRRLLSSHGIRPAYEMLEEKLK-QGSFARFMSKNEDIRKVKLLMQQSISH-----GA 439
L H LL HG+RP Y+ L L Q + A ++ + V+ L ++ GA
Sbjct: 403 LLHAMELLDQHGLRPLYQYLGGVLNGQRASASVRAEMMRLSGVEQLWSDLVTRFKPAPGA 462
Query: 440 QS------------PKLSKMLEVLVDHFKTKDPK---HSRVIIFSNFRGSVRDIMNALAT 484
+ PKL K+ ++LV HF++ P +RVI+FS FR SV +IM+ L
Sbjct: 463 DNPSSTQAPFVGGHPKLEKLKQLLVQHFRSHAPTAQGETRVIVFSQFRDSVEEIMHMLKQ 522
Query: 485 IGDLVKATEFIGQSSGK--------------------------ASKGQSQKVQQAVLEKF 518
+ LV+ FIGQ SG S G SQ+ Q V++ F
Sbjct: 523 LRPLVRPASFIGQGSGTNRSPVLAGSGPDAKMSTSPLMPSNRLTSGGISQRDQLRVMDAF 582
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
R G YN +V+T +GEEGLD+ +VDL+ICFDA SP+R++QR+GRTGR+ GRI
Sbjct: 583 RKGVYNTLVSTCVGEEGLDVGQVDLIICFDAFKSPVRLMQRLGRTGRQRLGRI 635
>gi|119497161|ref|XP_001265345.1| helicase, putative [Neosartorya fischeri NRRL 181]
gi|189082435|sp|A1D4V5.1|MPH1_NEOFI RecName: Full=ATP-dependent DNA helicase MPH1
gi|119413507|gb|EAW23448.1| helicase, putative [Neosartorya fischeri NRRL 181]
Length = 1111
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 228/596 (38%), Positives = 328/596 (55%), Gaps = 37/596 (6%)
Query: 2 AANKIPIEINGDDDDEFDWEAAVREIDTACQSSK-PSTSNSTNFNLCSKANKKPSTCKQS 60
AA +P ++ DD FD + ++ T Q+++ P + N +P +QS
Sbjct: 195 AAADVPFNLDDIPDDAFDSDLSLSPPRTTSQATRGPPVQSQFRTN-------RPLGLRQS 247
Query: 61 TL-DKFFGNLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAIT 118
TL D N Q E+ +E H +++ EA TW+YP N+ RDYQF I
Sbjct: 248 TLFDMAARNSDIPSQRGEQILSPPEKNEPPTHHKLNEEAINTWVYPTNLGKTRDYQFNIA 307
Query: 119 KTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVG 178
+ LF N LVALPTGLGKT IAA ++ N++RW +I+F AP++PLV QQI AC + G
Sbjct: 308 QRGLFHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVAPTKPLVAQQISACFQVAG 367
Query: 179 IPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRA 238
IP+ T +TG+ +P RA WK+KRVFF+TPQ L D++SG K +V LV+DEAHRA
Sbjct: 368 IPRSQTTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSGIADPKRIVLLVVDEAHRA 427
Query: 239 TGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSS 298
TG YAY ++ L R+LALTATPGS +++Q +ID L I+ +E R E D+
Sbjct: 428 TGGYAYVEVVKFLKRYNKSFRVLALTATPGSTVESVQAVIDGLGIAKVEIRTEQSLDIRE 487
Query: 299 YVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRD 358
YVH R E+ + E V ++P +L + RD L+ L +R
Sbjct: 488 YVHARDTEVQTFKNSDEMVLCMELFTRTLQPLVDQLRNLNAYWGRDPMALTAFGLTKARQ 547
Query: 359 KFRQAPPPNLPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAYEML------EEKLKQ 411
++ + + G+V A F L +L H LL HGI P Y L + K
Sbjct: 548 QWMGSDAGRNANLGLKGKVNAIFTVLASLAHAIDLLKYHGITPFYRHLLHFQSNTDGQKG 607
Query: 412 GSFARFMSKNEDIRKVKLLMQ------QSISHGAQSPKLSKMLEVLVDHFKTK------- 458
G + R + ++E +K+ +Q + I H PKL + +V+++HF +
Sbjct: 608 GKYQRQIVQDESFKKLMNHLQPWTKNPEFIGH----PKLEYLKQVVLNHFMDRGEGTAAN 663
Query: 459 -DPKHS--RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVL 515
D S R++IF +FR S +++ L L++ F+GQSS K S+G QK Q +++
Sbjct: 664 GDQSQSATRIMIFVHFRDSAEEVVRVLKRYEPLIRPHVFVGQSSAKGSEGMDQKTQLSIV 723
Query: 516 EKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+KF+ G YN IVATSIGEEGLDI EVDL++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 724 QKFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNI 779
>gi|325182937|emb|CCA17392.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
gi|325189887|emb|CCA24367.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 1653
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 220/540 (40%), Positives = 321/540 (59%), Gaps = 24/540 (4%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
ID +A KT ++P N +R+YQ +I + A++ NTLV+LPTGLGKTLIA+VV++NF+RWFP+
Sbjct: 146 IDTQALKTLVFPGNYQIREYQVSIAEKAMYHNTLVSLPTGLGKTLIASVVMHNFYRWFPN 205
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GK++F AP++PLV QQI+AC+ I G+P + T ++ G + R +WK KR+FF TPQ
Sbjct: 206 GKVIFLAPTKPLVTQQIQACYEINGLPLDQTAEIQGNVPKESRRKWWKQKRIFFCTPQSF 265
Query: 214 EKDIQSGTCLMKY-LVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQ 272
D++ G + +VCL+IDEAHRA GNYAYC AI+EL RI+AL+ATPGSK +
Sbjct: 266 TNDVKEGIFKDAHQIVCLIIDEAHRARGNYAYCMAIQELKRYTNWFRIVALSATPGSKVE 325
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332
IQ II NL IS +E R D DV Y+ RK E+I+ + +E I N I ++
Sbjct: 326 FIQEIITNLQISHIEARTMDDSDVKKYMFERKEEIIKCPVSEEIKVIGNLIDRLLEKLLH 385
Query: 333 RLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392
RL+ G++Q + L+ LL +RD FR + +E FG L++ H R+L
Sbjct: 386 RLAQYGVMQAGSPEKLTQFYLLQARDHFRNTKRSQYQSHQIHIIEGDFGLLLSWVHARKL 445
Query: 393 LSSHGIRPA---YEMLEEKLKQGSFAR--FMSKNEDIRKVKLLMQQSISHGAQS--PKLS 445
L HGI+P E+ + K+ S+++ M NE V+ L G KL
Sbjct: 446 LMVHGIKPCTGYIEVWRQDTKRISWSKRDLMESNEFKGLVEYLESMGSKEGLSQDHSKLD 505
Query: 446 KMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKAS-- 503
+ ++L HF T+ K ++ I+F+ FR SV DI+ + + ++A FIGQSS +S
Sbjct: 506 VLRKILEKHF-TESKKETKAIVFTQFRASV-DIIQDRLSKSESIRAERFIGQSSVTSSCF 563
Query: 504 --------KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
+GQ+QK QQ ++ F+AG NV+VAT I EEGLDI +VDL++ +D SP+R
Sbjct: 564 NTKLVENQRGQTQKHQQEIITNFKAGTINVLVATCIAEEGLDIGQVDLIVLYDTVTSPVR 623
Query: 556 MIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAE 615
+IQRMGRTGRK G + + + E +++ +S + + A+TT K KL A+
Sbjct: 624 LIQRMGRTGRKRIGNVVILVTEGDE--EKKLQRSLSNARGITK--ALTTKALKNKLEFAK 679
>gi|156056669|ref|XP_001594258.1| hypothetical protein SS1G_04065 [Sclerotinia sclerotiorum 1980]
gi|189082206|sp|A7EFH4.1|MPH1_SCLS1 RecName: Full=ATP-dependent DNA helicase mph1
gi|154701851|gb|EDO01590.1| hypothetical protein SS1G_04065 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1235
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 214/541 (39%), Positives = 309/541 (57%), Gaps = 35/541 (6%)
Query: 51 NKKPSTCKQSTLDKFFGNLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPV 110
N+ PS+ + + K+ + P+P H +D EA KTWIYP N+
Sbjct: 220 NQVPSSTQAKKVHKYLVDKVPEPP---------------THHTLDEEAIKTWIYPNNLGA 264
Query: 111 -RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ+ I LF+N LVALPTGLGKT IAA ++ NFFRW D +IVF AP++PLV QQ
Sbjct: 265 ERRYQYTIVHKGLFNNLLVALPTGLGKTFIAATIMLNFFRWTTDSQIVFMAPTKPLVSQQ 324
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
++AC I GIP+ T +TG SP RA W KRVFF+TPQ +E D+++G K +
Sbjct: 325 VKACFEIAGIPRSSTTMLTGDQSPALRAEEWAEKRVFFMTPQTVENDLKTGIADPKKIAL 384
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
+V+DEAHRATGNYAY ++ L R+LALTATPGS + +Q +IDNL I+ +E R
Sbjct: 385 IVVDEAHRATGNYAYTKVVQFLRRFNESFRVLALTATPGSSVEAVQEVIDNLEIAEVEIR 444
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
E D+ YVH R I I ++ E + I + ++P + L + N+D L+
Sbjct: 445 TEDSIDIKEYVHRRDITEILIDPSDEIIMIRELFSKALQPLVNLLCSQKAYYNKDPMGLT 504
Query: 350 PVDLLNSRDKFRQAPPPNLPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAYEML--- 405
+L +R + + Q+ G + A F L ++ H +LL+ HGI P + +
Sbjct: 505 QYGMLTARKAWMASGAGKSAQMSIKGMMNALFTVLTSMGHAIKLLNFHGIGPFFSNIKDF 564
Query: 406 ----EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHG--AQSPKLSKMLEVLVDHF---- 455
E K G + + + + +K+ +Q I+ PKL+ + + +++HF
Sbjct: 565 RAEVEGNKKGGKYKNQIVNSPEFKKMMERIQGWINKEDFIGHPKLTYLCDTVLNHFLDAG 624
Query: 456 -----KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKV 510
P +RVI+F+ +R S DI L G +++A+ F+GQS K S+G +Q+
Sbjct: 625 AGLMGDNMPPSSTRVIVFTEYRDSAEDIARVLNKHGPMIRASVFVGQSDSKRSEGMNQEK 684
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
Q + KF+AGG NVIVATSIGEEGLDI EVDL++C+D++ SP+RM+QRMGRTGRK G+
Sbjct: 685 QLETIRKFKAGGINVIVATSIGEEGLDIGEVDLIVCYDSSSSPIRMLQRMGRTGRKRAGK 744
Query: 571 I 571
I
Sbjct: 745 I 745
>gi|290985850|ref|XP_002675638.1| predicted protein [Naegleria gruberi]
gi|284089235|gb|EFC42894.1| predicted protein [Naegleria gruberi]
Length = 920
Score = 395 bits (1014), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/484 (41%), Positives = 311/484 (64%), Gaps = 8/484 (1%)
Query: 93 QIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP 152
QID EAAKTWIYP N R YQF I + L +NTLV LPTGLGKT IA+VV+YN++RWFP
Sbjct: 136 QIDLEAAKTWIYPTNYTERKYQFKICEKVLLTNTLVCLPTGLGKTFIASVVMYNYYRWFP 195
Query: 153 DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQV 212
GKI+F A + LV QQ+ AC+NI+GIP+E T+ +TG+ISP +R WKTKRVFF TP+
Sbjct: 196 IGKIIFLAHTISLVDQQMNACYNIMGIPEEETVVLTGRISPDERVDLWKTKRVFFCTPEC 255
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQ 272
+EKD+++G+C + +V +V DEAH+A+GN+AYC + + R+L L+ATPG
Sbjct: 256 VEKDLETGSCPARQVVLVVFDEAHKASGNHAYCVVTKLIGKKNDHWRVLGLSATPGKTHA 315
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332
IQ +I NL IS +E R+ESD+DV+ Y+H ++ + I +++V I+N ++++ P+
Sbjct: 316 DIQKVITNLRISHVEVRDESDKDVAEYLHEKETKTIICNRDRDSVIIDNLFYKLVGPFVE 375
Query: 333 RLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392
RL G + N D +LS L + KF ++ + + G+ + L+++
Sbjct: 376 RLIQAGAVYNCDPSSLSKNALHVAMTKFLKSKKKDAYKY-MGDFQVLIALYTGLFYLHTQ 434
Query: 393 LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRK--VKLLMQ---QSISHGAQSPKLSKM 447
+ + + E + +S+N+ I++ K ++Q + IS G PKL KM
Sbjct: 435 DMTLFVDSLQNITTETTDKKKKQYLLSRNQIIKQPIFKTILQACEKIISQGYVHPKLKKM 494
Query: 448 LEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQS 507
+V+++HF+ K + ++V++F+ FR +V DI+ + + +++K + FIGQ G+A KG +
Sbjct: 495 EQVILEHFQ-KASQETKVVVFALFRKTV-DIIVEILSKHEILKVSPFIGQGKGRAQKGFN 552
Query: 508 QKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH 567
QK Q++++ FR G +NV+V+T IGEEGLDI E+DL++ +D+ SP R+IQR+GRTGRK
Sbjct: 553 QKKQKSIIHDFRDGIFNVLVSTPIGEEGLDIGEIDLIVLYDSASSPTRLIQRVGRTGRKR 612
Query: 568 DGRI 571
G I
Sbjct: 613 KGNI 616
>gi|407929506|gb|EKG22324.1| Helicase [Macrophomina phaseolina MS6]
Length = 1389
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/499 (41%), Positives = 304/499 (60%), Gaps = 10/499 (2%)
Query: 83 SSFDESLCHVQIDAEAAKTWIYPVNVP-VRDYQFAITKTALFSNTLVALPTGLGKTLIAA 141
+S +E L H +ID EA KTW+YP N+ +RDYQF I LF N LVALPTGLGKT IAA
Sbjct: 484 ASKEEPLTHHKIDREAMKTWVYPTNLGNIRDYQFNIVHRGLFHNLLVALPTGLGKTFIAA 543
Query: 142 VVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK 201
++ NF+RW + +IVF AP++PLV QQ+EAC I GI + T +TG++SP RA WK
Sbjct: 544 TIMLNFWRWTTEAQIVFVAPTKPLVAQQVEACLGIAGIRRSQTTMLTGEVSPGLRAEEWK 603
Query: 202 TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRIL 261
TKR+FF+TPQ + D++ G C K +V LV+DEAHRATG YAY ++ + R+L
Sbjct: 604 TKRIFFMTPQTMINDLKRGYCDPKNIVLLVVDEAHRATGAYAYVEIVKFIRRFNQSFRVL 663
Query: 262 ALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINN 321
ALTATPG + +Q +ID L IS +E R E+ D+ +VH R++E + ++ + +
Sbjct: 664 ALTATPGGDVEAVQKVIDGLEISKVEIRMENSMDIKPFVHKREVERKVLRDNKDLLVAKD 723
Query: 322 RIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKF-RQAPPPNLPQIKFGEVEAYF 380
+ + IRP RL+ ++D LS L R + R N G V A F
Sbjct: 724 LLSKAIRPVLERLNQQNAFWSKDPMNLSLYGLNQGRSSWMRSDAGRNASHPVRGMVNAMF 783
Query: 381 GALITLYHIRRLLSSHGIRPAYEMLEEKLKQGS--FARFMSKNEDIRKVKLLMQQ--SIS 436
AL+ +L HGIRP Y +L + + + + + ++ N + K+ L+++ + S
Sbjct: 784 EALMGFGRGIDVLKYHGIRPFYRILCDYKTEATTKWKKEITNNPNFEKLLNLLREWTAKS 843
Query: 437 HGAQSPKLSKMLEVLVDHF----KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKAT 492
PKL + E +++HF + D ++V++F+++R S DI+ L G +++
Sbjct: 844 DYIGHPKLEYLREYVLNHFLDAEEGSDASQTKVMVFAHWRDSAEDIVRVLKLNGPMIRPH 903
Query: 493 EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
F+GQ++ K S+ QK Q+ V+++F+AG YN +VATSIGEEGLDI EVDL++C+D S
Sbjct: 904 VFVGQAATKTSEAMDQKRQEEVVKQFKAGVYNTLVATSIGEEGLDIGEVDLIVCYDQKAS 963
Query: 553 PLRMIQRMGRTGRKHDGRI 571
P+RM+QRMGRTGRK G+I
Sbjct: 964 PIRMLQRMGRTGRKRRGKI 982
>gi|189082538|sp|A6RIS1.2|MPH1_BOTFB RecName: Full=ATP-dependent DNA helicase mph1
gi|347829953|emb|CCD45650.1| similar to gi|189082538|sp|A6RIS1.2|MPH1_BOTFB RecName:
Full=ATP-dependent DNA helicase mph1 [Botryotinia
fuckeliana]
Length = 1229
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/505 (41%), Positives = 299/505 (59%), Gaps = 20/505 (3%)
Query: 87 ESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY 145
E H +D EA KTW+YP N+ P R YQ+ I LF+N LVALPTGLGKT IAA ++
Sbjct: 247 EPPTHHSLDREAIKTWVYPNNLGPERRYQYTIVHKGLFNNLLVALPTGLGKTFIAATIML 306
Query: 146 NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205
NFFRW + +IVF AP++PLV QQ++AC I GIP+ T +TG +P RA W KRV
Sbjct: 307 NFFRWTKNSQIVFMAPTKPLVSQQVKACFEIAGIPRSSTTMLTGDQTPALRAEEWDEKRV 366
Query: 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTA 265
FF+TPQ +E D+++G K + LV+DEAHRATG YAY + L R+LALTA
Sbjct: 367 FFMTPQTVENDLKTGIADPKRIALLVVDEAHRATGKYAYTKVVEFLRRFNKSFRVLALTA 426
Query: 266 TPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE 325
TPGS + +Q +IDNL I+ +E R E D+ YVH R I I ++ E + + + +
Sbjct: 427 TPGSTVEAVQEVIDNLEIAEVEIRTEESIDIKEYVHRRDITEILIDPSDEIIMVRDLFSK 486
Query: 326 VIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKF-GEVEAYFGALI 384
++P + L + N+D +L+ +L +R + + + G + A F L
Sbjct: 487 ALQPLVNLLCSQKAYYNKDPMSLTQFGMLTARKTWMASGAGKSANMGVKGMMNALFTVLT 546
Query: 385 TLYHIRRLLSSHGIRPAYEML-------EEKLKQGSFARFMSKNEDIRKVKLLMQQSISH 437
++ H ++L+ HGI P + + E K G + + + D +K+ +Q I+
Sbjct: 547 SMGHAIKILNFHGIGPFFSNIKDFRAEVEGNKKGGKYKNQVVNDPDFKKMMDRIQSWINK 606
Query: 438 GA--QSPKLSKMLEVLVDHF------KTKD---PKHSRVIIFSNFRGSVRDIMNALATIG 486
PKL+ + + +++HF T D P +RVI+F+ +R S DI L G
Sbjct: 607 EEFIGHPKLTHLCDTVLNHFLDAGAGLTGDNMPPSSTRVIVFTEYRDSAEDIARVLNKHG 666
Query: 487 DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
++KA+ F+GQS K S+G +Q+ Q + KF+AGG NVIVATSIGEEGLDI EVDL++C
Sbjct: 667 PMIKASVFVGQSDSKRSEGMNQEKQLETIRKFKAGGINVIVATSIGEEGLDIGEVDLIVC 726
Query: 547 FDANVSPLRMIQRMGRTGRKHDGRI 571
+D++ SP+RM+QRMGRTGRK G+I
Sbjct: 727 YDSSSSPIRMLQRMGRTGRKRAGKI 751
>gi|325092865|gb|EGC46175.1| helicase C-terminal domain-containing protein [Ajellomyces
capsulatus H88]
Length = 1142
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/508 (41%), Positives = 302/508 (59%), Gaps = 20/508 (3%)
Query: 84 SFDESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAV 142
S +E H ++D+ A K+W+YP N+ R+YQF IT+ ALF N LVALPTGLGKT IAA
Sbjct: 298 SRNEPPTHHRLDSTAIKSWVYPTNLGKKREYQFNITQRALFHNLLVALPTGLGKTFIAAT 357
Query: 143 VIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202
V+ N+FRW D +IVF AP++PLV QQI AC I GIP+ T+ +TG P RA+ W++
Sbjct: 358 VMLNWFRWTTDAQIVFVAPTKPLVSQQIVACFGIAGIPRSQTVMLTGSTGPAIRAAEWQS 417
Query: 203 KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILA 262
KRVFF+TPQ L D+++G K +V LV+DEAHRATG YAY ++ L R+LA
Sbjct: 418 KRVFFMTPQTLVNDLKNGHADPKRIVLLVVDEAHRATGGYAYAEVVKFLQQYNTSFRVLA 477
Query: 263 LTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNR 322
LTATPGS + +Q +ID L IS +E R E D+ YVH+R IE+ + ++ + +
Sbjct: 478 LTATPGSSVEAVQEVIDGLNISKVEIRTEESLDIREYVHSRNIEIETFDYSEDMIMCMDL 537
Query: 323 IWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP-NLPQIKFGEVEAYFG 381
+ ++P +L + +D TL+P L +R + ++P N G V A F
Sbjct: 538 FGKSLQPVLDKLRSQNAHWAKDPMTLTPYGLTVARKDWLKSPAGRNANNGLKGMVHAIFS 597
Query: 382 ALITLYHIRRLLSSHGIRPAYEML---EEKLKQGS--FARFMSKNEDIRKV--KLLMQQS 434
L +L H LL HGI P Y L + L G + R + +E+ + + +L M +
Sbjct: 598 VLSSLAHAIDLLKYHGIGPFYRNLVSFQNALGAGGSKYQRQIVDDENFKTLMNRLKMWTN 657
Query: 435 ISHGAQSPKLSKMLEVLVDHF-----------KTKDPKHSRVIIFSNFRGSVRDIMNALA 483
PKL + V+++HF + +R+++F++FR S +I+ L
Sbjct: 658 NEDFIGHPKLEFLKRVVLNHFMDAEKDGDDSLANRHRSSTRIMVFAHFRDSAEEIVRVLK 717
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
G +++ F+GQ++ K S G QK Q ++EKF+ G YN IVATS+GEEGLDI EVDL
Sbjct: 718 RHGPMIRPHVFVGQAAAKGSGGMDQKTQLDIIEKFKEGTYNTIVATSVGEEGLDIGEVDL 777
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRI 571
++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 778 IVCYDSSASPIRMLQRMGRTGRKRRGNI 805
>gi|240279736|gb|EER43241.1| helicase C-terminal domain-containing protein [Ajellomyces
capsulatus H143]
Length = 1055
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/508 (41%), Positives = 302/508 (59%), Gaps = 20/508 (3%)
Query: 84 SFDESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAV 142
S +E H ++D+ A K+W+YP N+ R+YQF IT+ ALF N LVALPTGLGKT IAA
Sbjct: 231 SRNEPPTHHRLDSTAIKSWVYPTNLGKKREYQFNITQRALFHNLLVALPTGLGKTFIAAT 290
Query: 143 VIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202
V+ N+FRW D +IVF AP++PLV QQI AC I GIP+ T+ +TG P RA+ W++
Sbjct: 291 VMLNWFRWTTDAQIVFVAPTKPLVSQQIVACFGIAGIPRSQTVMLTGSTGPAIRAAEWQS 350
Query: 203 KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILA 262
KRVFF+TPQ L D+++G K +V LV+DEAHRATG YAY ++ L R+LA
Sbjct: 351 KRVFFMTPQTLVNDLKNGHADPKRIVLLVVDEAHRATGGYAYAEVVKFLQQYNTSFRVLA 410
Query: 263 LTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNR 322
LTATPGS + +Q +ID L IS +E R E D+ YVH+R IE+ + ++ + +
Sbjct: 411 LTATPGSSVEAVQEVIDGLNISKVEIRTEESLDIREYVHSRNIEIETFDYSEDMIMCMDL 470
Query: 323 IWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP-NLPQIKFGEVEAYFG 381
+ ++P +L + +D TL+P L +R + ++P N G V A F
Sbjct: 471 FGKSLQPVLDKLRSQNAHWAKDPMTLTPYGLTVARKDWLKSPAGRNANNGLKGMVHAIFS 530
Query: 382 ALITLYHIRRLLSSHGIRPAYEML---EEKLKQGS--FARFMSKNEDIRKV--KLLMQQS 434
L +L H LL HGI P Y L + L G + R + +E+ + + +L M +
Sbjct: 531 VLSSLAHAIDLLKYHGIGPFYRNLVSFQNALGAGGSKYQRQIVDDENFKTLMNRLRMWTN 590
Query: 435 ISHGAQSPKLSKMLEVLVDHF-----------KTKDPKHSRVIIFSNFRGSVRDIMNALA 483
PKL + V+++HF + +R+++F++FR S +I+ L
Sbjct: 591 NEDFIGHPKLEFLKRVVLNHFMDAEKDGDDSLANRHRSSTRIMVFAHFRDSAEEIVRVLK 650
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
G +++ F+GQ++ K S G QK Q ++EKF+ G YN IVATS+GEEGLDI EVDL
Sbjct: 651 RHGPMIRPHVFVGQAAAKGSGGMDQKTQLDIIEKFKEGTYNTIVATSVGEEGLDIGEVDL 710
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRI 571
++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 711 IVCYDSSASPIRMLQRMGRTGRKRRGNI 738
>gi|70990412|ref|XP_750055.1| DEAD box helicase Mph1 [Aspergillus fumigatus Af293]
gi|74669967|sp|Q4WKB5.1|MPH1_ASPFU RecName: Full=ATP-dependent DNA helicase mph1
gi|189082420|sp|B0XMV6.1|MPH1_ASPFC RecName: Full=ATP-dependent DNA helicase mph1
gi|66847687|gb|EAL88017.1| DEAD box helicase Mph1, putative [Aspergillus fumigatus Af293]
gi|159130535|gb|EDP55648.1| DEAD box helicase Mph1, putative [Aspergillus fumigatus A1163]
Length = 1101
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 227/595 (38%), Positives = 327/595 (54%), Gaps = 37/595 (6%)
Query: 3 ANKIPIEINGDDDDEFDWEAAVREIDTACQSSK-PSTSNSTNFNLCSKANKKPSTCKQST 61
A +P +++ DD FD + ++ + Q+++ P + N +P +QST
Sbjct: 186 AADVPFDLDDIPDDAFDSDLSLSPPRSTSQATRGPPVQSQFRTN-------RPLGLRQST 238
Query: 62 L-DKFFGNLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITK 119
L D N Q E+ E H +++ EA TW+YP N+ RDYQF I +
Sbjct: 239 LFDMAARNPDISSQRGEQIFSPPEKSEPPTHHKLNEEALNTWVYPTNLGKTRDYQFNIAQ 298
Query: 120 TALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGI 179
LF N LVALPTGLGKT IAA ++ N++RW +I+F AP++PLV QQI AC + GI
Sbjct: 299 RGLFHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVAPTKPLVAQQISACFQVAGI 358
Query: 180 PQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239
P+ T +TG+ +P RA WK+KRVFF+TPQ L D++SG K +V LV+DEAHRAT
Sbjct: 359 PRSETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSGIADPKRIVLLVVDEAHRAT 418
Query: 240 GNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSY 299
G YAY ++ L R+LALTATPGS +++Q IID+L I+ +E R E D+ Y
Sbjct: 419 GGYAYVEVVKFLKRYNKSFRVLALTATPGSTVESVQAIIDDLGIAKVEIRTEQSLDIREY 478
Query: 300 VHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDK 359
VH R E+ + E V ++P +L + RD L+ L +R +
Sbjct: 479 VHARDTEVQTFQNSDEMVLCMELFTRTLQPLVDQLRNLNAYWGRDPMALTAFGLTKARQQ 538
Query: 360 FRQAPPPNLPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAYEML------EEKLKQG 412
+ + + G+V A F L +L H LL HGI P Y L + K G
Sbjct: 539 WMGSDAGRNANLALKGKVNAIFTVLASLAHAIDLLKYHGITPFYRHLLHFQSNTDGQKGG 598
Query: 413 SFARFMSKNEDIRKVKLLMQ------QSISHGAQSPKLSKMLEVLVDHFKTK-------- 458
+ R + ++E +K+ +Q I H PKL + +V+++HF +
Sbjct: 599 KYQRQIVQDESFKKLMNHLQPWTKNPDFIGH----PKLEYLKQVVLNHFMDRGEGTAANG 654
Query: 459 DPKHS--RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLE 516
D S R++IF +FR S +++ L L++ F+GQSS K S+G QK Q ++++
Sbjct: 655 DQSQSATRIMIFVHFRDSAEEVVRVLKRHEPLIRPHVFVGQSSAKGSEGMDQKTQLSIVQ 714
Query: 517 KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
KF+ G YN IVATSIGEEGLDI EVDL++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 715 KFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNI 769
>gi|189082537|sp|Q0CWI2.2|MPH1_ASPTN RecName: Full=ATP-dependent DNA helicase mph1
Length = 1100
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 218/549 (39%), Positives = 313/549 (57%), Gaps = 31/549 (5%)
Query: 49 KANKKPSTCKQSTL-DKFFGNLGPKP-QGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPV 106
+++ +P +Q+TL + N P+P QG + F + H +++ EA TW+YP
Sbjct: 247 QSSNRPLGVRQTTLFNMATRNQAPQPPQGEQVFAPPEKVEAPTQH-KLNQEAISTWVYPT 305
Query: 107 NV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPL 165
N+ RDYQF IT+ LF N LVALPTGLGKT IAA ++ N+FRW D +IVF AP++PL
Sbjct: 306 NLGKTRDYQFNITQKGLFHNLLVALPTGLGKTFIAATIMLNWFRWTRDAQIVFVAPTKPL 365
Query: 166 VMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMK 225
V QQ+ AC + GIP+ T +TG+ +P RA W+ KRVFF+TPQ L D++SG K
Sbjct: 366 VAQQVSACFGVAGIPRSQTTMLTGEAAPGIRAQEWQDKRVFFMTPQTLINDLKSGIADPK 425
Query: 226 YLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYIST 285
+V LV+DEAHRATG YAY ++ L R+LALTATPGS +++Q +ID L IS
Sbjct: 426 RIVLLVVDEAHRATGGYAYVEVVKFLRRYNQSFRVLALTATPGSTVESVQAVIDGLEISK 485
Query: 286 LEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDY 345
+E R E D+ YVH R E+ + +E V + + + ++P +L + RD
Sbjct: 486 VEIRTEQSLDIREYVHARNTEVQTFKNSEEMVLCMDLLSKTLQPLVDQLRTLNAYWGRDP 545
Query: 346 QTLSPVDLLNSRDKFRQAPPPNLPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAYEM 404
L+ L SR ++ + G+V A F L +L H LL HGI P Y
Sbjct: 546 MALTAYGLTKSRQQWMLSDAGRNSSFGLKGKVNAIFTVLASLAHGIDLLKYHGITPFYRH 605
Query: 405 L------EEKLKQGSFARFMSKNEDIRKVKLLMQ------QSISHGAQSPKLSKMLEVLV 452
L + K G + R + ++E +K+ + + I H PKL + +V++
Sbjct: 606 LLHFQGNTDGQKGGKYQRQIVQDEHFKKLMNHLSPWTKNPEFIGH----PKLEYLKQVVL 661
Query: 453 DHF----------KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKA 502
+HF + +RV+IF +FR S ++ L +++ F+GQ+S K
Sbjct: 662 NHFMDAGEGSAGAEGASQSTTRVMIFVHFRDSAEEVARVLKRYEPMIRPQVFVGQASAKG 721
Query: 503 SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
S G +QK Q V++KF+ G YN IVATSIGEEGLDI EVDL++C+D++ SP+RM+QRMGR
Sbjct: 722 SDGMNQKTQLGVVQKFKQGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGR 781
Query: 563 TGRKHDGRI 571
TGRK G I
Sbjct: 782 TGRKRAGNI 790
>gi|198432334|ref|XP_002123226.1| PREDICTED: similar to Fanconi anemia, complementation group M
[Ciona intestinalis]
Length = 1371
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/521 (39%), Positives = 303/521 (58%), Gaps = 46/521 (8%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D A WIYP N PVRDYQ +ITKTALF NTLV LPTGLGKT IA+VV+YNF+RWFP
Sbjct: 4 FDKSAGNIWIYPTNYPVRDYQLSITKTALFKNTLVVLPTGLGKTFIASVVMYNFYRWFPQ 63
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQ-ISPTKRASFWKTKRVFFVTPQV 212
GKI+F AP++PLV QQ +AC++I+GIP + +MTG + KR W KRVFF+TPQ+
Sbjct: 64 GKIIFIAPTKPLVAQQSKACYDIMGIPADDQAEMTGSSMQVKKRQDLWTNKRVFFLTPQL 123
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQ 272
D+ SGTC + C+V DEAH+A GNYAYC I++++ R+LAL+ATPGS
Sbjct: 124 FNNDLASGTCPACDIKCVVFDEAHKAQGNYAYCQVIQKILVHSKNFRVLALSATPGSNMF 183
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332
+Q +I NL IST E R+E DV Y H R +E + V++ + + VI+ +
Sbjct: 184 AVQQVITNLLISTTEIRSEDAIDVRQYTHTRTVEKVVVKLCDRIMMFKEKYLAVIQVLIN 243
Query: 333 RLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392
RL + +L ++D + ++ LL +RD+FR+ L + +E F I+LYH L
Sbjct: 244 RLVSNDILYHKDAKNITKYALLMARDQFRKVS--GLHKASMCIIEGDFATAISLYHGLEL 301
Query: 393 LSSHGIRPAYEMLEEKLKQGSFARF-----MSKNEDIRKV-KLLMQQSISHGAQS----- 441
L HG++ + L+ + G+ A +S N+ +++ + L SH +
Sbjct: 302 LLQHGMKSFFIFLK-GIMDGAKANLRTRNVLSANDQFQEIYQELTDLFSSHNTNTYVQTH 360
Query: 442 -------------PKLSKMLEVLVDHFK--------TKDPKHSRVIIFSNFRGSVRDIMN 480
PKL K+ E+++ +F + ++VI+F +R SV+++ +
Sbjct: 361 KEAYSDLSICYSHPKLRKLEEIVLTYFHNIQQCADTSNKSTETKVIVFCQYRDSVQEVTD 420
Query: 481 ALATIGDLVKATEFIGQS----------SGKASKGQSQKVQQAVLEKFRAGGYNVIVATS 530
L L++ +F+G + G SK +QK Q + +F +G YN ++AT
Sbjct: 421 LLQQHEPLIRPIKFVGHAPTAKNESPCREGNKSKRFTQKDQLEAVARFCSGVYNTLIATC 480
Query: 531 IGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+GEEGLDI VDL++CFD++ SP+R++QRMGRTGRK +G+I
Sbjct: 481 VGEEGLDIGAVDLIVCFDSHRSPIRLVQRMGRTGRKRNGKI 521
>gi|238483465|ref|XP_002372971.1| DEAD box helicase Mph1, putative [Aspergillus flavus NRRL3357]
gi|220701021|gb|EED57359.1| DEAD box helicase Mph1, putative [Aspergillus flavus NRRL3357]
Length = 1129
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 225/582 (38%), Positives = 325/582 (55%), Gaps = 37/582 (6%)
Query: 15 DDEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTL-DKFFGNLGPKP 73
DD FD + ++ A Q +P+T +++ +P +Q++L D N +P
Sbjct: 235 DDAFDSDISLSPPTRAQQ--QPATRQ------FGQSSNRPLGVRQTSLFDMTSRNQTDQP 286
Query: 74 QGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPT 132
E+ DE ++D +A TW+YP N+ RDYQF I + LF+N LVALPT
Sbjct: 287 PIGEQVWSPPQKDEPPTQHKLDHDALSTWVYPTNLGKTRDYQFNIAQKGLFNNLLVALPT 346
Query: 133 GLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQIS 192
GLGKT IAA ++ N+FRW +I+F AP++PLV QQI AC I GIP+ T +TG+ +
Sbjct: 347 GLGKTFIAATIMLNWFRWTESAQIIFVAPTKPLVAQQISACFGIAGIPRSQTTMLTGEAA 406
Query: 193 PTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM 252
P RA W+ KRVFF+TPQ L D++SG K +V LV+DEAHRATG YAY ++ L
Sbjct: 407 PGIRAEEWQNKRVFFMTPQTLINDLKSGIADPKRIVLLVVDEAHRATGGYAYVEVVKFLR 466
Query: 253 SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM 312
R+LALTATPGS +++Q +ID L I+ +E R E D+ YVH+R E+ +
Sbjct: 467 RYNQSFRVLALTATPGSTVESVQAVIDGLDIARVEIRTEQSLDIREYVHSRNTEVQTFKN 526
Query: 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK 372
+E V + + + ++P +L + RD L+ L SR ++ +
Sbjct: 527 SEEMVLCMDLLSKTLQPLVDQLRTLNAYWGRDPMMLTAFGLTKSRQQWMASDAGRNAHFG 586
Query: 373 F-GEVEAYFGALITLYHIRRLLSSHGIRPAYEML------EEKLKQGSFARFMSKNEDIR 425
G+V A F L +L H LL HGI P Y L E K G + R + ++E +
Sbjct: 587 LKGKVNAIFTVLASLAHAIDLLKYHGITPFYRHLLHFQSNTEGQKGGKYQRQVVQDESFK 646
Query: 426 KVKLLMQ------QSISHGAQSPKLSKMLEVLVDHF---------KTKDPKHS-RVIIFS 469
K+ +Q + I H PKL + V+++HF + D + S R++IF
Sbjct: 647 KLINHLQPWTKNPEFIGH----PKLEYLKSVVLNHFMDAGEGSNGEASDSQSSTRIMIFV 702
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
+FR S ++ L +++ F+GQSS K S+G QK Q +++KF+ G YN IVAT
Sbjct: 703 HFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIVQKFKKGTYNTIVAT 762
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
SIGEEGLDI EVDL++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 763 SIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNI 804
>gi|298707926|emb|CBJ30312.1| DEAD box helicase similar to CG7922-PA [Ectocarpus siliculosus]
Length = 2654
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/496 (41%), Positives = 293/496 (59%), Gaps = 49/496 (9%)
Query: 89 LCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF 148
L V ID EAA+TWIYPVN P+R YQ I ALF NTLVALPTGLGKTLIAAVV+YN++
Sbjct: 97 LPRVPIDEEAAQTWIYPVNYPIRQYQLQIVTQALFQNTLVALPTGLGKTLIAAVVMYNYY 156
Query: 149 RWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFV 208
RWFP GK+VF AP++PLV QQI AC++I+G+P++ T ++ G + P KRA W +RVFF
Sbjct: 157 RWFPRGKVVFLAPTKPLVAQQISACYDIMGVPEQDTAELQGSVDPKKRAQLWDERRVFFC 216
Query: 209 TPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPG 268
TPQ + DI+ C VC+V+DEAHR TGNYAY IRE+ + R+LAL+ATPG
Sbjct: 217 TPQSMANDIKHKRCDPARFVCVVVDEAHRGTGNYAYVNVIREVAAATAHFRVLALSATPG 276
Query: 269 SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIR 328
S +TIQ ++ NL I+ +E R+E D +V+ + H R+IE+++ ++G I + +V++
Sbjct: 277 SDIKTIQQVLVNLRIAHIECRSEDDPEVARHTHARQIEVVKCKLGGHIDAIRQSLVDVLQ 336
Query: 329 PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYH 388
P +R+++ +L +RD L +L S FR++ N + GEVEA G L +
Sbjct: 337 PLVNRMASKRVLFSRDPMALKAWTVLQSLHAFRRSVHENGNEHIAGEVEAEMGVLTKVMQ 396
Query: 389 IRRLLSSHGIRPAYEMLEEKLKQ-------GSFARFMSKNEDIRKVKLLMQQSISHGAQS 441
+ L +HG+ LE K+ + R + ++E + L++Q++ A +
Sbjct: 397 AKDTLVTHGVAGCLHKLENMEKEVKVRGIRSNAERGVFRHEAWPGLMKLLRQTVETTAGA 456
Query: 442 ----PKLSKMLEVLVDHFKTKDP--KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFI 495
PKL K+ EVL +HF + K +R I+F+ R SV
Sbjct: 457 SVKHPKLIKLKEVLREHFARHEAGGKSTRAIVFTQLRDSV-------------------- 496
Query: 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
+AV+ F +G +N +VAT I EEGLDI EVDL++ FDA SP+R
Sbjct: 497 ----------------EAVVRAFFSGEFNCLVATCIAEEGLDIGEVDLIVSFDALNSPVR 540
Query: 556 MIQRMGRTGRKHDGRI 571
M+QRMGRTGRK G++
Sbjct: 541 MVQRMGRTGRKRAGKV 556
>gi|328774208|gb|EGF84245.1| hypothetical protein BATDEDRAFT_9192, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 581
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 216/509 (42%), Positives = 313/509 (61%), Gaps = 27/509 (5%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
HV ID + +TWIYP+N P+RDYQF I ALF+NTLVALPTGLGKT +AAVV+YN++RW
Sbjct: 19 HV-IDEKELETWIYPINYPLRDYQFNIISRALFANTLVALPTGLGKTFLAAVVMYNYYRW 77
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
FP+GKI+F AP++PLV QQIEAC I GI Q+ T ++TG R WK KRVFF+TP
Sbjct: 78 FPEGKIIFMAPTKPLVAQQIEACFKITGIHQDMTYELTGTTKSETRIGIWKQKRVFFLTP 137
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
QV++ D++S C +V LV+DEAHRATGNYAYC IREL R+LAL+ATPGS
Sbjct: 138 QVMQNDLRSAACSADKVVLLVVDEAHRATGNYAYCEVIRELSKASSPFRVLALSATPGSD 197
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+ +QH+++NL I +E R E D+ ++ +R+IE I V + + I + +V+ +
Sbjct: 198 MKAVQHVVNNLLIQHIEIRTEDSFDIRPFIFSRQIEEIIVSLTPQITRIVDAFAKVVSIF 257
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKF-RQAPPPNLPQIKFGEVEAYFGALITLYHI 389
RL G+ +D + +S LL++R ++ N QI + G + +
Sbjct: 258 LVRLCNHGVFYEKDPRAVSRYALLDARKRWIDNHKDANRAQI--SSIMNDSGICMAMCAA 315
Query: 390 RRLLSSHGIRPAYEMLEEKLKQG-----SFARF-MSKNEDIRKVKLLMQQSISH--GAQS 441
+ L ++GIR Y+ + L + S +R + +N D++ + + + + +
Sbjct: 316 LQQLQTYGIRSFYDTVSSFLAEAPSEKNSRSRSELVENSDLKALMIHVNEITKSPDFSSH 375
Query: 442 PKLSKMLEVLVDHFKTKDPKH------------SRVIIFSNFRGSVRDIMNALATIGDLV 489
PKL +++ V+++HF + P + SRV+IFS +R +V +I+ L +
Sbjct: 376 PKLDRLVAVVLEHFSKELPDNGDEGSSDASLSKSRVMIFSQYRDNVDEIVTKLNQHHPFL 435
Query: 490 KATEFIGQSSGKASKGQ---SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
+ FIGQSS K+ K +QK Q V+ KF++G YNV+V+TSIGEEGLDI +VDL++C
Sbjct: 436 RVMSFIGQSSSKSGKKGKGFTQKEQLEVISKFQSGNYNVLVSTSIGEEGLDIGDVDLIVC 495
Query: 547 FDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
+DA SP+RM+QRMGRTGRK GRI I
Sbjct: 496 YDAQTSPVRMLQRMGRTGRKRQGRIVVIL 524
>gi|317139883|ref|XP_001817822.2| ATP-dependent DNA helicase mph1 [Aspergillus oryzae RIB40]
gi|189082536|sp|Q2URJ5.2|MPH1_ASPOR RecName: Full=ATP-dependent DNA helicase mph1
Length = 1129
Score = 391 bits (1005), Expect = e-105, Method: Compositional matrix adjust.
Identities = 225/582 (38%), Positives = 324/582 (55%), Gaps = 37/582 (6%)
Query: 15 DDEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTL-DKFFGNLGPKP 73
DD FD + ++ A Q +P+T +++ +P +Q++L D N +P
Sbjct: 235 DDAFDSDISLSPPTRAQQ--QPATRQ------FGQSSNRPLGVRQTSLFDMTSRNQTDQP 286
Query: 74 QGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPT 132
E+ DE ++D +A TW+YP N+ RDYQF I + LF N LVALPT
Sbjct: 287 PIGEQVWSPPQKDEPPTQHKLDHDALSTWVYPTNLGKTRDYQFNIAQKGLFHNLLVALPT 346
Query: 133 GLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQIS 192
GLGKT IAA ++ N+FRW +I+F AP++PLV QQI AC I GIP+ T +TG+ +
Sbjct: 347 GLGKTFIAATIMLNWFRWTESAQIIFVAPTKPLVAQQISACFGIAGIPRSQTTMLTGEAA 406
Query: 193 PTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM 252
P RA W+ KRVFF+TPQ L D++SG K +V LV+DEAHRATG YAY ++ L
Sbjct: 407 PGIRAEEWQNKRVFFMTPQTLINDLKSGIADPKRIVLLVVDEAHRATGGYAYVEVVKFLR 466
Query: 253 SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM 312
R+LALTATPGS +++Q +ID L I+ +E R E D+ YVH+R E+ +
Sbjct: 467 RYNQSFRVLALTATPGSTVESVQAVIDGLDIARVEIRTEQSLDIREYVHSRNTEVQTFKN 526
Query: 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK 372
+E V + + + ++P +L + RD L+ L SR ++ +
Sbjct: 527 SEEMVLCMDLLSKTLQPLVDQLRTLNAYWGRDPMMLTAFGLTKSRQQWMASDAGRNAHFG 586
Query: 373 F-GEVEAYFGALITLYHIRRLLSSHGIRPAYEML------EEKLKQGSFARFMSKNEDIR 425
G+V A F L +L H LL HGI P Y L E K G + R + ++E +
Sbjct: 587 LKGKVNAIFTVLASLAHAIDLLKYHGITPFYRHLLHFQSNTEGQKGGKYQRQVVQDESFK 646
Query: 426 KVKLLMQ------QSISHGAQSPKLSKMLEVLVDHF---------KTKDPKHS-RVIIFS 469
K+ +Q + I H PKL + V+++HF + D + S R++IF
Sbjct: 647 KLINHLQPWTKNPEFIGH----PKLEYLKSVVLNHFMDAGEGSNGEASDSQSSTRIMIFV 702
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
+FR S ++ L +++ F+GQSS K S+G QK Q +++KF+ G YN IVAT
Sbjct: 703 HFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIVQKFKKGTYNTIVAT 762
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
SIGEEGLDI EVDL++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 763 SIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNI 804
>gi|115387249|ref|XP_001211130.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195214|gb|EAU36914.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 918
Score = 391 bits (1005), Expect = e-105, Method: Compositional matrix adjust.
Identities = 218/549 (39%), Positives = 313/549 (57%), Gaps = 31/549 (5%)
Query: 49 KANKKPSTCKQSTL-DKFFGNLGPKP-QGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPV 106
+++ +P +Q+TL + N P+P QG + F + H +++ EA TW+YP
Sbjct: 247 QSSNRPLGVRQTTLFNMATRNQAPQPPQGEQVFAPPEKVEAPTQH-KLNQEAISTWVYPT 305
Query: 107 NV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPL 165
N+ RDYQF IT+ LF N LVALPTGLGKT IAA ++ N+FRW D +IVF AP++PL
Sbjct: 306 NLGKTRDYQFNITQKGLFHNLLVALPTGLGKTFIAATIMLNWFRWTRDAQIVFVAPTKPL 365
Query: 166 VMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMK 225
V QQ+ AC + GIP+ T +TG+ +P RA W+ KRVFF+TPQ L D++SG K
Sbjct: 366 VAQQVSACFGVAGIPRSQTTMLTGEAAPGIRAQEWQDKRVFFMTPQTLINDLKSGIADPK 425
Query: 226 YLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYIST 285
+V LV+DEAHRATG YAY ++ L R+LALTATPGS +++Q +ID L IS
Sbjct: 426 RIVLLVVDEAHRATGGYAYVEVVKFLRRYNQSFRVLALTATPGSTVESVQAVIDGLEISK 485
Query: 286 LEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDY 345
+E R E D+ YVH R E+ + +E V + + + ++P +L + RD
Sbjct: 486 VEIRTEQSLDIREYVHARNTEVQTFKNSEEMVLCMDLLSKTLQPLVDQLRTLNAYWGRDP 545
Query: 346 QTLSPVDLLNSRDKFRQAPPPNLPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAYEM 404
L+ L SR ++ + G+V A F L +L H LL HGI P Y
Sbjct: 546 MALTAYGLTKSRQQWMLSDAGRNSSFGLKGKVNAIFTVLASLAHGIDLLKYHGITPFYRH 605
Query: 405 L------EEKLKQGSFARFMSKNEDIRKVKLLMQ------QSISHGAQSPKLSKMLEVLV 452
L + K G + R + ++E +K+ + + I H PKL + +V++
Sbjct: 606 LLHFQGNTDGQKGGKYQRQIVQDEHFKKLMNHLSPWTKNPEFIGH----PKLEYLKQVVL 661
Query: 453 DHF----------KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKA 502
+HF + +RV+IF +FR S ++ L +++ F+GQ+S K
Sbjct: 662 NHFMDAGEGSAGAEGASQSTTRVMIFVHFRDSAEEVARVLKRYEPMIRPQVFVGQASAKG 721
Query: 503 SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
S G +QK Q V++KF+ G YN IVATSIGEEGLDI EVDL++C+D++ SP+RM+QRMGR
Sbjct: 722 SDGMNQKTQLGVVQKFKQGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGR 781
Query: 563 TGRKHDGRI 571
TGRK G I
Sbjct: 782 TGRKRAGNI 790
>gi|452001997|gb|EMD94456.1| hypothetical protein COCHEDRAFT_1192531 [Cochliobolus
heterostrophus C5]
Length = 1299
Score = 391 bits (1005), Expect = e-105, Method: Compositional matrix adjust.
Identities = 220/554 (39%), Positives = 326/554 (58%), Gaps = 34/554 (6%)
Query: 47 CSKANKKP----STCKQSTLDKFFGNLGPKPQGTE-EFNEGSSF-----DESLCHVQIDA 96
+ A+K+P + +Q+TL FG++G ++ + N+ SF E H ++D
Sbjct: 245 TASAHKRPVAPQNGLRQTTL---FGSVGASSSTSQSQVNKRYSFVVDQKAEPPTHHKLDP 301
Query: 97 EAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK 155
EA KTW+YP N+ +RDYQF I + LF+N LVALPTGLGKT IAA +I N+FRW D +
Sbjct: 302 EAIKTWVYPTNLGTIRDYQFNIVQRGLFNNLLVALPTGLGKTFIAATIILNWFRWTIDSQ 361
Query: 156 IVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEK 215
IVF AP++PLV QQ+EAC I GIP+ +T +TG + RA WK KRVFF+TPQ L
Sbjct: 362 IVFVAPTKPLVAQQVEACFKIAGIPRSYTTMLTGGVQTGLRAKEWKEKRVFFMTPQTLLN 421
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
D+++G K +V LV+DEAHRATG YAY + L R+LALTATPG+ +++Q
Sbjct: 422 DLKAGYADPKKIVLLVVDEAHRATGAYAYVEVVSFLRRFNSSFRVLALTATPGADVESVQ 481
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW-EVIRPYTSRL 334
+ID L IS +E R E+ D+ SYVH RKI+ +V + +E+ ++ E ++P + +
Sbjct: 482 KVIDGLDISKVEIRTENSMDICSYVHQRKIDK-QVFQNTDEMEMCMDLYSEALQPLVNTI 540
Query: 335 SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLS 394
+ + ++D + L+P ++ K+ Q N + V F L ++ H LL
Sbjct: 541 AGLNAYWSKDPRDLTPFGCQQAKKKWFQEAGRNANRGLQSTVHTIFAILASISHGMDLLK 600
Query: 395 SHGIRPAY----EMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQS----PKLSK 446
HG+ P Y E +E K S + + D K KL+ + + ++ PKL
Sbjct: 601 FHGVGPFYIKMKEFQDESAKTKSKYKKQILDSDAWK-KLMGRLQVWMADENFVGHPKLEY 659
Query: 447 MLEVLVDHFKTKD---------PKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ 497
+ +V++DHF D +R+++F++FR S +I L +++ F+GQ
Sbjct: 660 LQQVVLDHFINADDGQGVNGAASSQTRIMVFAHFRDSAEEIARILKRHEPMIRPRIFVGQ 719
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
+ GK S+G QK Q +E+F+ G +N ++ATSIGEEGLDI EVDL+IC+D+ SP+RM+
Sbjct: 720 AHGKNSEGMKQKDQLDAIERFKNGEFNTLIATSIGEEGLDIGEVDLIICYDSKASPIRML 779
Query: 558 QRMGRTGRKHDGRI 571
QRMGRTGRK +GRI
Sbjct: 780 QRMGRTGRKREGRI 793
>gi|391870973|gb|EIT80142.1| DEAD-box like helicase [Aspergillus oryzae 3.042]
Length = 995
Score = 391 bits (1004), Expect = e-105, Method: Compositional matrix adjust.
Identities = 225/582 (38%), Positives = 324/582 (55%), Gaps = 37/582 (6%)
Query: 15 DDEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTL-DKFFGNLGPKP 73
DD FD + ++ A Q +P+T +++ +P +Q++L D N +P
Sbjct: 101 DDAFDSDISLSPPTRAQQ--QPATRQ------FGQSSNRPLGVRQTSLFDMTSRNQTDQP 152
Query: 74 QGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPT 132
E+ DE ++D +A TW+YP N+ RDYQF I + LF N LVALPT
Sbjct: 153 PIGEQVWSPPQKDEPPTQHKLDHDALSTWVYPTNLGKTRDYQFNIAQKGLFHNLLVALPT 212
Query: 133 GLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQIS 192
GLGKT IAA ++ N+FRW +I+F AP++PLV QQI AC I GIP+ T +TG+ +
Sbjct: 213 GLGKTFIAATIMLNWFRWTESAQIIFVAPTKPLVAQQISACFGIAGIPRSQTTMLTGEAA 272
Query: 193 PTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM 252
P RA W+ KRVFF+TPQ L D++SG K +V LV+DEAHRATG YAY ++ L
Sbjct: 273 PGIRAEEWQNKRVFFMTPQTLINDLKSGIADPKRIVLLVVDEAHRATGGYAYVEVVKFLR 332
Query: 253 SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM 312
R+LALTATPGS +++Q +ID L I+ +E R E D+ YVH+R E+ +
Sbjct: 333 RYNQSFRVLALTATPGSTVESVQAVIDGLDIARVEIRTEQSLDIREYVHSRNTEVQTFKN 392
Query: 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK 372
+E V + + + ++P +L + RD L+ L SR ++ +
Sbjct: 393 SEEMVLCMDLLSKTLQPLVDQLRTLNAYWGRDPMMLTAFGLTKSRQQWMASDAGRNAHFG 452
Query: 373 F-GEVEAYFGALITLYHIRRLLSSHGIRPAYEML------EEKLKQGSFARFMSKNEDIR 425
G+V A F L +L H LL HGI P Y L E K G + R + ++E +
Sbjct: 453 LKGKVNAIFTVLASLAHAIDLLKYHGITPFYRHLLHFQSNTEGQKGGKYQRQVVQDESFK 512
Query: 426 KVKLLMQ------QSISHGAQSPKLSKMLEVLVDHF---------KTKDPKHS-RVIIFS 469
K+ +Q + I H PKL + V+++HF + D + S R++IF
Sbjct: 513 KLINHLQPWTKNPEFIGH----PKLEYLKSVVLNHFMDAGEGSNGEASDSQSSTRIMIFV 568
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
+FR S ++ L +++ F+GQSS K S+G QK Q +++KF+ G YN IVAT
Sbjct: 569 HFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIVQKFKKGTYNTIVAT 628
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
SIGEEGLDI EVDL++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 629 SIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNI 670
>gi|358056839|dbj|GAA97189.1| hypothetical protein E5Q_03865 [Mixia osmundae IAM 14324]
Length = 1221
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/505 (40%), Positives = 304/505 (60%), Gaps = 17/505 (3%)
Query: 71 PKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVAL 130
P P E G + V D +A KTWIYP+N P+R YQ+ AL++N L +L
Sbjct: 146 PDPAVLEALLAGGPLPLTEMKVLPDRQAMKTWIYPINKPLRSYQYNAAAKALYTNVLCSL 205
Query: 131 PTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQ 190
PTGLGKT IAAVV+ NF+RWFP GKI+F AP+RPLV QQIEACH IVGIP ID+TG
Sbjct: 206 PTGLGKTFIAAVVMLNFYRWFPKGKIIFMAPTRPLVTQQIEACHGIVGIPASDAIDITGS 265
Query: 191 ISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRE 250
+P R W+ +RVF+ TPQV+ D+ + +VC++IDEAHRA+G+YAYC +R
Sbjct: 266 NTPALREKAWQDRRVFYATPQVVTNDLIASRLDPTDIVCIIIDEAHRASGDYAYCGVVRY 325
Query: 251 LMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEV 310
LMS R+LALTATPGSK + +Q+++DNL+I +E R + D+ YVH + I+L V
Sbjct: 326 LMSRNPHFRVLALTATPGSKPEAVQNVVDNLHIGHIEVRTDDSIDIQQYVHKKDIDLQRV 385
Query: 311 EMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ 370
+ + E+ + + +I ++ + + + + + P+ + +R+ + Q Q
Sbjct: 386 PLDSDLKELRDTLGALIAKFSKPVQHLFQIGDPTLVKVYPLG-MRARECYAQK------Q 438
Query: 371 IKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLL 430
G+V F AL L L + + L+E K + +E +R +
Sbjct: 439 HGLGDV---FSALALLARAMSYLLEESVSACIDALKES-KSKAVKTSPQYSEVLRLGAVY 494
Query: 431 MQQSISHGAQSPKLSKMLEVLVDHFK---TKDPKHSRVIIFSNFRGSVRDIMNALATIGD 487
MQ+ G PK++K+LE++++HF+ + + +RV++F +FR V +I+ +L
Sbjct: 495 MQRPDYCG--HPKMAKLLEMILEHFENAAAQGEQSTRVMVFCSFRAVVEEIVQSLNRHKP 552
Query: 488 LVKATEFIGQSSG-KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
+ AT F+GQS+ K ++G +QK QQ VL F+AG +N ++ATS+GEEGLDI EVDL++C
Sbjct: 553 KISATRFVGQSTDKKGARGFTQKEQQKVLNDFKAGTFNTLIATSVGEEGLDIGEVDLIVC 612
Query: 547 FDANVSPLRMIQRMGRTGRKHDGRI 571
++A SP+R +QR+GRTGR DG +
Sbjct: 613 YEAISSPIRTLQRIGRTGRARDGGV 637
>gi|317026087|ref|XP_001388951.2| ATP-dependent DNA helicase mph1 [Aspergillus niger CBS 513.88]
gi|189082535|sp|A2Q8R2.2|MPH1_ASPNC RecName: Full=ATP-dependent DNA helicase mph1
Length = 1124
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/560 (39%), Positives = 315/560 (56%), Gaps = 51/560 (9%)
Query: 48 SKANKKPSTCKQSTLDKFFGNLGPKPQGT----EEFNEGSSFDESLCHVQIDAEAAKTWI 103
+++ +P +Q+TL FG + P+ E+ E +++ EA TW+
Sbjct: 257 TQSTNRPLGVRQTTL---FGMVARNPENQPPRGEQVYSPPEKSEPPTQHKLNQEALGTWV 313
Query: 104 YPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
YP N+ RDYQF I + LF N LVALPTGLGKT IAA ++ N+FRW D +IVF AP+
Sbjct: 314 YPTNLGKTRDYQFNIAQKGLFHNLLVALPTGLGKTFIAATIMLNWFRWTKDAQIVFVAPT 373
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV QQI AC + GIP+ T +TG+ +P RA WK KRVFF+TPQ L D+++G
Sbjct: 374 KPLVAQQISACFEVAGIPRSQTTMLTGEAAPGIRAEEWKAKRVFFMTPQTLINDLKTGIA 433
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
K +V +V+DEAHRATG YAY ++ L R+LALTATPGS +++Q +ID L
Sbjct: 434 DPKRIVLVVVDEAHRATGGYAYVEVVKFLRRYNQSFRVLALTATPGSTVESVQAVIDGLD 493
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
IS +E R E D+ YVH++ ++ + +E V + + + ++P +L +
Sbjct: 494 ISRVEIRTEQSLDIREYVHSKDTDVQTFQNSEEMVLCMDLMSKALQPLLDQLRSTNAYWG 553
Query: 343 RDYQTLSPVDLLNSR------DKFRQAPPPNLPQIKFG---EVEAYFGALITLYHIRRLL 393
RD L+ L +R D R A FG ++ A F L +L H LL
Sbjct: 554 RDPMGLTAYGLTKARQQWMLSDSGRNA--------HFGVKAKMNAIFTVLASLAHGIDLL 605
Query: 394 SSHGIRPAYEML------EEKLKQGSFARFMSKNEDIRKVKLLMQ------QSISHGAQS 441
HGI P Y L E K G + R + ++E +K+ +Q + I H
Sbjct: 606 KYHGITPFYRHLLHFQSNTEGQKGGKYQRQVVQDESYKKLMNHLQPWTKNPEFIGH---- 661
Query: 442 PKLSKMLEVLVDHF----------KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKA 491
PKL + +V+++HF + KD +RV+IF +FR S ++ L +++
Sbjct: 662 PKLEYLKQVVLNHFMDAGEGSGADENKDQPATRVMIFVHFRDSAEEVTRVLKRYEPMIRP 721
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
F+GQSS K S+G QK Q +++KF+ G YN IVATSIGEEGLDI EVDL++C+D++
Sbjct: 722 HVFVGQSSAKGSEGMGQKTQLDIVQKFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSA 781
Query: 552 SPLRMIQRMGRTGRKHDGRI 571
SP+RM+QRMGRTGRK G+I
Sbjct: 782 SPIRMLQRMGRTGRKRSGKI 801
>gi|358366851|dbj|GAA83471.1| ATP-dependent DNA helicase Mph1 [Aspergillus kawachii IFO 4308]
Length = 1130
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/560 (39%), Positives = 315/560 (56%), Gaps = 51/560 (9%)
Query: 48 SKANKKPSTCKQSTLDKFFGNLGPKPQGT----EEFNEGSSFDESLCHVQIDAEAAKTWI 103
+++ +P +Q+TL FG + P+ E+ E +++ EA TW+
Sbjct: 263 TQSTNRPLGVRQTTL---FGMVARHPENQPPRGEQVYSPPEKSEPPTQHKLNQEALGTWV 319
Query: 104 YPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
YP N+ RDYQF I + LF N LVALPTGLGKT IAA ++ N+FRW D +IVF AP+
Sbjct: 320 YPTNLGKTRDYQFNIAQKGLFHNLLVALPTGLGKTFIAATIMLNWFRWTKDAQIVFVAPT 379
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV QQI AC + GIP+ T +TG+ +P RA WK KRVFF+TPQ L D+++G
Sbjct: 380 KPLVAQQISACFEVAGIPRSQTTMLTGEAAPGIRAEEWKAKRVFFMTPQTLINDLKTGIA 439
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
K +V +V+DEAHRATG YAY ++ L R+LALTATPGS +++Q +ID L
Sbjct: 440 DPKRIVLVVVDEAHRATGGYAYVEVVKFLRRYNQSFRVLALTATPGSTVESVQAVIDGLD 499
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
IS +E R E D+ YVH++ ++ + +E V + + + ++P +L +
Sbjct: 500 ISRVEIRTEQSLDIREYVHSKDTDVQTFQNSEEMVLCMDLMSKALQPLLDQLRSTNAYWG 559
Query: 343 RDYQTLSPVDLLNSR------DKFRQAPPPNLPQIKFG---EVEAYFGALITLYHIRRLL 393
RD L+ L +R D R A FG ++ A F L +L H LL
Sbjct: 560 RDPMGLTAYGLTKARQQWMLSDSGRNA--------HFGVKAKMNAIFTVLASLAHGIDLL 611
Query: 394 SSHGIRPAYEML------EEKLKQGSFARFMSKNEDIRKVKLLMQ------QSISHGAQS 441
HGI P Y L E K G + R + ++E +K+ +Q + I H
Sbjct: 612 KYHGITPFYRHLLHFQSNTEGQKGGKYQRQVVQDESYKKLMNHLQPWTKNPEFIGH---- 667
Query: 442 PKLSKMLEVLVDHF----------KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKA 491
PKL + +V+++HF + KD +RV+IF +FR S ++ L +++
Sbjct: 668 PKLEYLKQVVLNHFMDAGEGSGADENKDQPATRVMIFVHFRDSAEEVTRVLKRYEPMIRP 727
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
F+GQSS K S+G QK Q +++KF+ G YN IVATSIGEEGLDI EVDL++C+D++
Sbjct: 728 HVFVGQSSAKGSEGMGQKTQLDIVQKFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSA 787
Query: 552 SPLRMIQRMGRTGRKHDGRI 571
SP+RM+QRMGRTGRK G+I
Sbjct: 788 SPIRMLQRMGRTGRKRAGKI 807
>gi|452825107|gb|EME32106.1| ATP-dependent RNA helicase-like protein [Galdieria sulphuraria]
Length = 1137
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 210/504 (41%), Positives = 300/504 (59%), Gaps = 28/504 (5%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
+V +D AA +WI+P N+P R+YQF I ++AL NTLV LPTGLGKT IAAVV+YNF RW
Sbjct: 220 NVALDLNAASSWIFPTNIPEREYQFNIVRSALACNTLVCLPTGLGKTFIAAVVMYNFLRW 279
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
+PDGK+VF AP++PLV QQI AC+ +VGIP E T ++TG + R + WK+K VFFVTP
Sbjct: 280 YPDGKVVFMAPTKPLVRQQIAACYRVVGIPIESTAEITGAMKTEVRKTMWKSKNVFFVTP 339
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIREL-MSVPVQLRILALTATPGS 269
QV++ DI G C ++C+V DEAH+ATG Y YC+ + +L + RILAL+ATPG+
Sbjct: 340 QVMKNDIDHGICPASKVICVVFDEAHKATGKYVYCSLVEDLNKATGGSYRILALSATPGN 399
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
IQ +IDNL I+ +E+R+E D D Y +R+IE I V +G + + +++ P
Sbjct: 400 TISVIQQVIDNLQIAKVEFRSEDDPDTKPYTFHRQIESIIVPLGADLQGAKDLAMDLLSP 459
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ--IKFGEVEAYFGALITLY 387
+ + L N+ + + ++Q P + K V + F ++L
Sbjct: 460 FLN-----NLCNNQAFYERCAERHVCYYXTWKQKFTPQTKEDHAKRSFVLSQFSLAVSLC 514
Query: 388 HIRRLLSSHGIRPAYEML-----EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSP 442
+ LL SHG+ P L E K + G + ++ E ++++ + + IS G P
Sbjct: 515 YGINLLYSHGLAPFDSFLESFESESKQRTGGLKKQIANREKFKQLRSITSELISRGVTHP 574
Query: 443 KLSKMLEVLVDHF-KTKDP--------KHSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
K K +EVL HF +T P +R I+F+ +R SV ++ LA L+ A
Sbjct: 575 KALKCVEVLKHHFSETSTPCSGFVEGKSSTRAIVFAQYRESVVELRRILAQYEPLIHAMC 634
Query: 494 FIGQS----SGKASK--GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
F+GQ+ S K+ K G SQK Q VL +FR G +NV+V+TSIGEEGLDI +VDL+I +
Sbjct: 635 FVGQAPSANSHKSQKTSGMSQKEQIEVLREFRKGTFNVLVSTSIGEEGLDIADVDLIISY 694
Query: 548 DANVSPLRMIQRMGRTGRKHDGRI 571
D SP+RM+QRMGRTGR G+I
Sbjct: 695 DVISSPIRMLQRMGRTGRARAGQI 718
>gi|384498802|gb|EIE89293.1| hypothetical protein RO3G_14004 [Rhizopus delemar RA 99-880]
Length = 1138
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 216/499 (43%), Positives = 296/499 (59%), Gaps = 23/499 (4%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
ID + TWIYPVN PVR YQ I + ALF NTLVALPTGLGKT IAAVV+YN++RWFP+
Sbjct: 45 IDIQNLCTWIYPVNYPVRGYQLNIVQKALFHNTLVALPTGLGKTFIAAVVMYNYWRWFPN 104
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
KI+F AP+RPLV QQIEAC I G+PQ T DMTG +P R WKTKRVFF TPQ +
Sbjct: 105 SKIIFMAPTRPLVDQQIEACFYICGLPQSDTCDMTGSTTPAARRELWKTKRVFFATPQTI 164
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
+KDI S C ++ +VC+V+DEAH+ATGNYAY +R + R+LALTATPGS
Sbjct: 165 QKDIISNACPVEKVVCIVVDEAHKATGNYAYTDVVRRISKKQQDFRVLALTATPGSNLDA 224
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQ------EAVEINNRIWE-V 326
+Q +I NL I+ ++ R E D+ + H + ++ I V + + I +R + V
Sbjct: 225 VQDVISNLKITNVQVRTEDSMDIREFSHGKNVQNIIVRLNYTEGASGDLPSIISRFRDSV 284
Query: 327 IRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITL 386
+P LS D S L ++R F + F V + A +L
Sbjct: 285 FKPVLIDLSKKPTNVTADPDQWSAFRLRSTRMHFSATAKNYNKNLMFLVVSTFLMAE-SL 343
Query: 387 YHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK-----------NEDIRKVKLLMQQSI 435
LL +HG+ P E LE +++ + K N +R++ + Q +
Sbjct: 344 SRSYELLCAHGVAPFLESLELIMEELEEKKQTGKKLTVPQNTFYNNSVVRRLIEELTQKL 403
Query: 436 SHG--AQSPKLSKMLEVLVDHFKT-KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKAT 492
PK+ ++L +L+ HF + K S+V+IFS+FR SV DI L+ L++AT
Sbjct: 404 QRPDFVGHPKMERLLSILISHFDNLEHGKASKVMIFSSFRSSVMDICRILSRHQPLIRAT 463
Query: 493 EFIGQ-SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
F+GQ +S K +KG Q QQ V++KF++ YNV+V+TSIGEEGLDI EVDL+IC+D+
Sbjct: 464 YFVGQATSKKGAKGLKQTEQQDVIQKFKSDNYNVLVSTSIGEEGLDIGEVDLIICYDSQT 523
Query: 552 SPLRMIQRMGRTGRKHDGR 570
SP+RM+QRMGRTGR+ G+
Sbjct: 524 SPIRMLQRMGRTGRQRRGK 542
>gi|451853662|gb|EMD66955.1| hypothetical protein COCSADRAFT_283338 [Cochliobolus sativus
ND90Pr]
Length = 1330
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 217/553 (39%), Positives = 326/553 (58%), Gaps = 32/553 (5%)
Query: 47 CSKANKKP----STCKQSTLDKFFGNLGPKPQGTE-EFNEGSSF-----DESLCHVQIDA 96
+ A K+P + +Q+TL FG++G ++ + N+ +F E H ++D
Sbjct: 276 TASARKRPVAPQTGLRQTTL---FGSVGASDSTSQSQVNKRYNFVVDQKAEPPTHHKLDP 332
Query: 97 EAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK 155
EA +TW+YP N+ +RDYQF I + LF+N LVALPTGLGKT IAA +I N+FRW D +
Sbjct: 333 EAIRTWVYPTNLGTIRDYQFNIVQRGLFNNLLVALPTGLGKTFIAATIILNWFRWTIDSQ 392
Query: 156 IVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEK 215
IVF AP++PLV QQ+EAC I GIP+ +T +TG + RA WK KRVFF+TPQ L
Sbjct: 393 IVFVAPTKPLVAQQVEACFKIAGIPRSYTTMLTGGVQTGLRAEEWKEKRVFFMTPQTLLN 452
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
D+++G K +V LV+DEAHRATG YAY + L R+LALTATPG+ +++Q
Sbjct: 453 DLKAGYADPKKIVLLVVDEAHRATGAYAYVEVVSFLRRFNNSFRVLALTATPGADVESVQ 512
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW-EVIRPYTSRL 334
+ID L IS +E R E+ D+ SYVH RKI+ +V + +E+ ++ E ++P + +
Sbjct: 513 KVIDGLDISKVEIRTENSMDICSYVHQRKIDK-QVFQNTDEMEMCMDLYSEALQPLVNTI 571
Query: 335 SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLS 394
+ + ++D + L+P ++ K+ Q N + V F L ++ H LL
Sbjct: 572 AGLNAYWSKDPRDLTPYGCQQAKKKWFQEAGRNANRGLQSTVHTIFAILASISHGMDLLK 631
Query: 395 SHGIRPAY----EMLEEKLKQGS-FARFMSKNEDIRKVKLLMQQSISHG--AQSPKLSKM 447
HG+ P Y E +E K S + + + ++ +K+ +Q I + PKL +
Sbjct: 632 FHGVGPFYIKMKEFQDESAKTKSKYKKQILDSDAWKKLMGRLQVWIDNENFVGHPKLEYL 691
Query: 448 LEVLVDHFKTKD---------PKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQS 498
+V++DHF D +R+++F++FR S +I L +++ F+GQ+
Sbjct: 692 QQVVLDHFVNADDGQGVNGAASSQTRIMVFAHFRDSAEEIARILKRHEPMIRPRIFVGQA 751
Query: 499 SGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558
GK S+G QK Q +E+F+ G +N ++ATSIGEEGLDI EVDL+IC+D+ SP+RM+Q
Sbjct: 752 HGKNSEGMKQKDQLEAIERFKNGEFNTLIATSIGEEGLDIGEVDLIICYDSKASPIRMLQ 811
Query: 559 RMGRTGRKHDGRI 571
RMGRTGRK +GRI
Sbjct: 812 RMGRTGRKREGRI 824
>gi|212539558|ref|XP_002149934.1| DEAD box helicase Mph1, putative [Talaromyces marneffei ATCC 18224]
gi|210067233|gb|EEA21325.1| DEAD box helicase Mph1, putative [Talaromyces marneffei ATCC 18224]
Length = 1129
Score = 388 bits (997), Expect = e-104, Method: Compositional matrix adjust.
Identities = 208/508 (40%), Positives = 297/508 (58%), Gaps = 26/508 (5%)
Query: 86 DESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI 144
DE H ++D TW+YP N+ VRDYQF I++ LF N LVALPTGLGKT IAA V+
Sbjct: 271 DEPPTHHKLDQNELNTWVYPTNIGTVRDYQFNISQKGLFYNLLVALPTGLGKTFIAATVM 330
Query: 145 YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204
N+FRW D +IVF AP++PLV QQ+ AC I GIP+ T +TG + P RA W+TKR
Sbjct: 331 LNWFRWTKDAQIVFTAPTKPLVSQQVAACLGIAGIPRSDTTLLTGNVPPGTRAEEWQTKR 390
Query: 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264
VFF+TPQ L D+++G K +V LV+DEAHRATG YAY ++ L R+LALT
Sbjct: 391 VFFMTPQTLINDLKTGIADPKRIVLLVVDEAHRATGGYAYVEVVKFLRRFNQSFRVLALT 450
Query: 265 ATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
ATPGS + +Q +ID L I+ +E R E D+ YVH R +++ +E + +
Sbjct: 451 ATPGSTVEAVQAVIDGLDIARVEIRTEQSLDIRQYVHARNVDVQTFTNSEEMSLCMDLMS 510
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKF-GEVEAYFGAL 383
+ ++P +L + RD L+ L +R ++ + G+V A F L
Sbjct: 511 KALQPSVDQLRNMNAYWGRDPMMLTAFGLTKARQQWMASDAGRNANFGLKGKVNALFTVL 570
Query: 384 ITLYHIRRLLSSHGIRPAYEML------EEKLKQGSFARFMSKNEDIRKVKLLMQ----- 432
+L H LL HGI P Y L + K G R + ++++ +K+ +Q
Sbjct: 571 ASLAHSIDLLKYHGIVPFYNHLVSFKSNTDGQKGGKTQRALVQDDNFKKLMDHLQPWCRD 630
Query: 433 -QSISHGAQSPKLSKMLEVLVDHF--------KTKDPKHSRVIIFSNFRGSVRDIMNALA 483
+ I H PKL + E+++++F +T ++RV+IF++FR S +I L
Sbjct: 631 TEFIGH----PKLGYLRELVLNYFMDNGEGTEETSGTSNTRVMIFAHFRDSAEEITRVLK 686
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+GQ++ K S+G QK Q +V+EKF+ G YN IVATSIGEEGLDI EVDL
Sbjct: 687 RQEPIIRPHVFVGQANAKGSEGMDQKTQLSVIEKFKNGTYNTIVATSIGEEGLDIGEVDL 746
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRI 571
++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 747 IVCYDSSASPIRMLQRMGRTGRKRAGNI 774
>gi|315044265|ref|XP_003171508.1| helicase domain-containing protein [Arthroderma gypseum CBS 118893]
gi|311343851|gb|EFR03054.1| helicase domain-containing protein [Arthroderma gypseum CBS 118893]
Length = 1184
Score = 388 bits (996), Expect = e-104, Method: Compositional matrix adjust.
Identities = 208/514 (40%), Positives = 300/514 (58%), Gaps = 30/514 (5%)
Query: 83 SSFDESLCHVQIDAEAAKTWIYPVNVP-VRDYQFAITKTALFSNTLVALPTGLGKTLIAA 141
+S E H ++ EA +TW YP+N+ RDYQ+ I+ LF N LVALPTGLGKT IAA
Sbjct: 326 ASQSEPPTHHVLNPEALETWTYPMNLGRKRDYQYNISHRGLFHNLLVALPTGLGKTFIAA 385
Query: 142 VVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK 201
V+ N+FRW D +IVF AP++PLV QQ++AC NIVGIP+ T +TG + P RA+ W+
Sbjct: 386 TVMLNWFRWTKDAQIVFVAPTKPLVSQQVDACFNIVGIPRSQTTMLTGNVPPGLRATEWQ 445
Query: 202 TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRIL 261
+KRVFF+TPQ L D+++G K +V LV+DEAHRATG Y Y ++ + R+L
Sbjct: 446 SKRVFFMTPQTLINDLKTGIADPKRVVLLVVDEAHRATGAYVYVEVVKFIQRFNTSFRVL 505
Query: 262 ALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINN 321
ALTATPGS T+Q +ID L IS +E R E+ D+ YVH + +E + +
Sbjct: 506 ALTATPGSTVDTVQEVIDGLNISRVEIRTENSLDIREYVHAKNVETVSFSNSDDMKLCME 565
Query: 322 RIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP-NLPQIKFGEVEAYF 380
+ + ++P +L ++ D +L+P L +R K+ +P N G V + F
Sbjct: 566 QFSKALKPVVEKLHSLNAYWGEDPMSLTPFGLTEARKKWMMSPGGRNASWGLKGMVNSIF 625
Query: 381 GALITLYHIRRLLSSHGIRPAYEML---------EEKLKQGSFARFMSKNEDIRKV---- 427
L +L H LL HG+ P Y L + K G + + + + + + +
Sbjct: 626 TVLASLAHATELLKYHGVGPFYRNLVSFRDGPTDGSQGKGGKYGKQIMDDMNFKSMMTTL 685
Query: 428 --KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKD--------PKHSRVIIFSNFRGSVRD 477
K+ + I H PKL + V+++HF D PK +RV++FS+FR S +
Sbjct: 686 RSKMTDEDFIGH----PKLEYLKRVILNHFLDADTNSHGADSPK-TRVMVFSHFRDSAEE 740
Query: 478 IMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLD 537
I+ L ++ F+GQ+S K S+G QK Q +++KF+ G YN IVATSIGEEGLD
Sbjct: 741 IVRVLKKHAPIILPHVFVGQASAKGSEGMDQKKQLEIIKKFKEGTYNTIVATSIGEEGLD 800
Query: 538 IMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
I EVDL+IC+D++ SP+RM+QRMGRTGRK G++
Sbjct: 801 IGEVDLIICYDSSASPIRMLQRMGRTGRKRMGKV 834
>gi|378728821|gb|EHY55280.1| fanconi anemia group M protein [Exophiala dermatitidis NIH/UT8656]
Length = 1143
Score = 388 bits (996), Expect = e-104, Method: Compositional matrix adjust.
Identities = 205/512 (40%), Positives = 306/512 (59%), Gaps = 32/512 (6%)
Query: 86 DESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI 144
+E H QI A +TW+YP N+ +RDYQ+ I LF N LVALPTGLGKT IAA ++
Sbjct: 233 NEPPTHHQISRSAMRTWVYPTNLGKIRDYQYNIVHKGLFHNLLVALPTGLGKTFIAATIM 292
Query: 145 YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204
N+FRW + ++VF AP++PLV QQ++AC +I GIP+ T +TG++ P RA W+ KR
Sbjct: 293 LNWFRWTENAQMVFVAPTKPLVSQQVDACFHIAGIPRSQTTMLTGEVPPAIRAEEWQEKR 352
Query: 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264
VFF+TPQ L D+++G C K +V +V+DEAH+ATGNYAY ++ L R+LALT
Sbjct: 353 VFFMTPQTLINDLKNGMCDPKKIVLIVVDEAHKATGNYAYVEVVKFLRRFNQSFRVLALT 412
Query: 265 ATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
ATPG+ + +Q +I+ L I+ +E R E D+ +VH+R IE E E
Sbjct: 413 ATPGATVEAVQEVINGLGIARVEIRTEDSLDIREFVHSRDIETEIFENSDEIAMSLELFC 472
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKF------RQAPPPNLPQIKFGEVEA 378
+RP L++ +D ++ L + D++ R+AP +K+ +++
Sbjct: 473 AAVRPLMGELNSQNAYWGKDPSMITLYGLKKASDQWRLSEAGRRAP----AGLKW-KMQG 527
Query: 379 YFGALITLYHIRRLLSSHGIRPAYEML-----EEKLKQGSFARFMSKNEDIRKV--KLLM 431
F L++L H LL HGI P Y + E +G +A+ ++ NE+ +K+ +L +
Sbjct: 528 IFAVLMSLAHNLELLKYHGIGPFYHKMKAFADEAAGGKGKYAKQVANNENFQKLMNRLRI 587
Query: 432 QQSISHGAQSPKLSKMLEVLVDHFK------------TKDPKHSRVIIFSNFRGSVRDIM 479
+ PKL+ + V+++HF T+ P +R+++F+++R S +I+
Sbjct: 588 WVNDPEFVGHPKLAYLKTVVLNHFMDAGEGQQGSGNVTQRPS-TRIMVFAHYRDSAEEIV 646
Query: 480 NALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIM 539
L G L++A F+GQS K S+G QK Q V++KF+AG YN IVATSIGEEGLDI
Sbjct: 647 RVLNRHGPLIRARVFVGQSGTKGSEGMDQKTQMDVIQKFKAGTYNTIVATSIGEEGLDIG 706
Query: 540 EVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
EVDL++C+D + SP+RM+QRMGRTGRK G+I
Sbjct: 707 EVDLIVCYDCSKSPIRMLQRMGRTGRKRAGKI 738
>gi|134055054|emb|CAK43695.1| unnamed protein product [Aspergillus niger]
Length = 884
Score = 387 bits (995), Expect = e-104, Method: Compositional matrix adjust.
Identities = 216/554 (38%), Positives = 315/554 (56%), Gaps = 39/554 (7%)
Query: 48 SKANKKPSTCKQSTLDKFFGNLGPKPQGT----EEFNEGSSFDESLCHVQIDAEAAKTWI 103
+++ +P +Q+TL FG + P+ E+ E +++ EA TW+
Sbjct: 17 TQSTNRPLGVRQTTL---FGMVARNPENQPPRGEQVYSPPEKSEPPTQHKLNQEALGTWV 73
Query: 104 YPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
YP N+ RDYQF I + LF N LVALPTGLGKT IAA ++ N+FRW D +IVF AP+
Sbjct: 74 YPTNLGKTRDYQFNIAQKGLFHNLLVALPTGLGKTFIAATIMLNWFRWTKDAQIVFVAPT 133
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV QQI AC + GIP+ T +TG+ +P RA WK KRVFF+TPQ L D+++G
Sbjct: 134 KPLVAQQISACFEVAGIPRSQTTMLTGEAAPGIRAEEWKAKRVFFMTPQTLINDLKTGIA 193
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
K +V +V+DEAHRATG YAY ++ L R+LALTATPGS +++Q +ID L
Sbjct: 194 DPKRIVLVVVDEAHRATGGYAYVEVVKFLRRYNQSFRVLALTATPGSTVESVQAVIDGLD 253
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
IS +E R E D+ YVH++ ++ + +E V + + + ++P +L +
Sbjct: 254 ISRVEIRTEQSLDIREYVHSKDTDVQTFQNSEEMVLCMDLMSKALQPLLDQLRSTNAYWG 313
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFG---EVEAYFGALITLYHIRRLLSSHGIR 399
RD L+ L +R ++ + FG ++ A F L +L H LL HGI
Sbjct: 314 RDPMGLTAYGLTKARQQWMLSDSGR--NAHFGVKAKMNAIFTVLASLAHGIDLLKYHGIT 371
Query: 400 PAYEML------EEKLKQGSFARFMSKNEDIRKVKLLMQ------QSISHGAQSPKLSKM 447
P Y L E K G + R + ++E +K+ +Q + I H PKL +
Sbjct: 372 PFYRHLLHFQSNTEGQKGGKYQRQVVQDESYKKLMNHLQPWTKNPEFIGH----PKLEYL 427
Query: 448 LEVLVDHF----------KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ 497
+V+++HF + KD +RV+IF +FR S ++ L +++ F+GQ
Sbjct: 428 KQVVLNHFMDAGEGSGADENKDQPATRVMIFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQ 487
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
SS K S+G QK Q +++KF+ G YN IVATSIGEEGLDI EVDL++C+D++ SP+RM+
Sbjct: 488 SSAKGSEGMGQKTQLDIVQKFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRML 547
Query: 558 QRMGRTGRKHDGRI 571
QRMGRTGRK G+I
Sbjct: 548 QRMGRTGRKRSGKI 561
>gi|83765677|dbj|BAE55820.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 853
Score = 387 bits (995), Expect = e-104, Method: Compositional matrix adjust.
Identities = 210/510 (41%), Positives = 295/510 (57%), Gaps = 28/510 (5%)
Query: 86 DESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI 144
DE ++D +A TW+YP N+ RDYQF I + LF N LVALPTGLGKT IAA ++
Sbjct: 23 DEPPTQHKLDHDALSTWVYPTNLGKTRDYQFNIAQKGLFHNLLVALPTGLGKTFIAATIM 82
Query: 145 YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204
N+FRW +I+F AP++PLV QQI AC I GIP+ T +TG+ +P RA W+ KR
Sbjct: 83 LNWFRWTESAQIIFVAPTKPLVAQQISACFGIAGIPRSQTTMLTGEAAPGIRAEEWQNKR 142
Query: 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264
VFF+TPQ L D++SG K +V LV+DEAHRATG YAY ++ L R+LALT
Sbjct: 143 VFFMTPQTLINDLKSGIADPKRIVLLVVDEAHRATGGYAYVEVVKFLRRYNQSFRVLALT 202
Query: 265 ATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
ATPGS +++Q +ID L I+ +E R E D+ YVH+R E+ + +E V + +
Sbjct: 203 ATPGSTVESVQAVIDGLDIARVEIRTEQSLDIREYVHSRNTEVQTFKNSEEMVLCMDLLS 262
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKF-GEVEAYFGAL 383
+ ++P +L + RD L+ L SR ++ + G+V A F L
Sbjct: 263 KTLQPLVDQLRTLNAYWGRDPMMLTAFGLTKSRQQWMASDAGRNAHFGLKGKVNAIFTVL 322
Query: 384 ITLYHIRRLLSSHGIRPAYEML------EEKLKQGSFARFMSKNEDIRKVKLLMQ----- 432
+L H LL HGI P Y L E K G + R + ++E +K+ +Q
Sbjct: 323 ASLAHAIDLLKYHGITPFYRHLLHFQSNTEGQKGGKYQRQVVQDESFKKLINHLQPWTKN 382
Query: 433 -QSISHGAQSPKLSKMLEVLVDHF---------KTKDPKHS-RVIIFSNFRGSVRDIMNA 481
+ I H PKL + V+++HF + D + S R++IF +FR S ++
Sbjct: 383 PEFIGH----PKLEYLKSVVLNHFMDAGEGSNGEASDSQSSTRIMIFVHFRDSAEEVTRV 438
Query: 482 LATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
L +++ F+GQSS K S+G QK Q +++KF+ G YN IVATSIGEEGLDI EV
Sbjct: 439 LKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIVQKFKKGTYNTIVATSIGEEGLDIGEV 498
Query: 542 DLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
DL++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 499 DLIVCYDSSASPIRMLQRMGRTGRKRAGNI 528
>gi|452979526|gb|EME79288.1| hypothetical protein MYCFIDRAFT_142855, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 778
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 207/515 (40%), Positives = 304/515 (59%), Gaps = 38/515 (7%)
Query: 86 DESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI 144
DE H ++D +A TW+YP N+ RDYQ+ I +LF NTLVALPTGLGKT IAA V+
Sbjct: 87 DEPPTHHKLDEKAMITWVYPTNLGSTRDYQYNIVSRSLFHNTLVALPTGLGKTFIAATVM 146
Query: 145 YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204
N++RW +IVF AP++PL+ QQ+EAC+ IVGIP+ T+ MTG+ +P RA W KR
Sbjct: 147 LNYYRWTTHAQIVFMAPTKPLIAQQMEACYGIVGIPKRDTVLMTGETAPASRAEEWLEKR 206
Query: 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264
VFF+TPQ + D+++G C K LV LV+DEAH+ATG YAY ++ + R+LALT
Sbjct: 207 VFFMTPQTVINDLRTGICDPKRLVLLVVDEAHKATGGYAYTEVVQFMRRFNNSFRVLALT 266
Query: 265 ATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
ATPGS + +Q +IDNL I+ +E R E D+ Y H + E + +E I +
Sbjct: 267 ATPGSTVEAVQAVIDNLGIARVELRTEQSLDIREYTHEKHTETEIFDFSEEQQRIMDLFS 326
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKF------RQAPPPNLPQIKFGEVEA 378
+V++P +L + +RD L+ L N+R K+ R+AP P IK G + A
Sbjct: 327 KVLKPVVEKLCSQNAYYSRDPMALTAYGLTNARQKWMSSDAGRKAPMP----IK-GMMNA 381
Query: 379 YFGALITLYHIRRLLSSHGIRPAY-------EMLEEKLKQGSFARFMSKNEDIRKVKLLM 431
F L +L H LL HGI P Y +E +G A ++ +E+ K+ +
Sbjct: 382 AFTVLSSLAHSISLLKHHGIGPFYSGVLAFQRQVESGESKGKTAANIAHDENFSKMMSTI 441
Query: 432 Q------QSISHGAQSPKLSKMLEVLVDHFKTKD---------PKHSRVIIFSNFRGSVR 476
+ + I H PKL + E++++HF P +RV++F+++R S
Sbjct: 442 RTWTNNPEFIGH----PKLEYLREIVLNHFLDAGEGRQGSDVPPSATRVMVFASYRDSTE 497
Query: 477 DIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGL 536
DI L +++ F+GQ++ K +G +QK Q V++ F++G +N ++ATSIGEEGL
Sbjct: 498 DICRVLKRNEPMIRPQVFVGQAASKGQEGMNQKKQNEVIQDFKSGKFNTLIATSIGEEGL 557
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
DI VDL++C+DA+ SP+RM+QR+GRTGRK GR+
Sbjct: 558 DIGTVDLIVCYDASSSPIRMLQRIGRTGRKRLGRV 592
>gi|226287424|gb|EEH42937.1| helicase C-terminal domain-containing protein [Paracoccidioides
brasiliensis Pb18]
Length = 1139
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 205/514 (39%), Positives = 301/514 (58%), Gaps = 30/514 (5%)
Query: 83 SSFDESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAA 141
++ +E H Q+D ++WIYP N+ R+YQF IT+ ALF N LVALPTGLGKT IAA
Sbjct: 297 ANHNELPTHHQLDLTTIRSWIYPSNLGKRREYQFNITQRALFHNLLVALPTGLGKTFIAA 356
Query: 142 VVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK 201
V+ N+FRW + +IVF AP++PLV QQ+ AC I GIP+ T+ +TG +P R W+
Sbjct: 357 TVMLNWFRWTKNAQIVFVAPTKPLVSQQVAACFGIAGIPRSQTVMLTGGTAPAIRVEEWQ 416
Query: 202 TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRIL 261
+KRVFF+TPQ L D++SG K +V LV+DEAHRATG+YAY ++ + R+L
Sbjct: 417 SKRVFFMTPQTLINDLKSGHADPKRIVLLVVDEAHRATGSYAYVEVVKFIQRFNNSFRVL 476
Query: 262 ALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINN 321
ALTATPGS +++Q +ID L I+ +E R E D+ YVH R +E+ + E +
Sbjct: 477 ALTATPGSTVESVQEVIDGLNIAKVEIRTEESLDIREYVHARCVEIETFQNSDEMAMCMD 536
Query: 322 RIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ--IKFGEVEAY 379
+ ++P +L RD L+P L +R ++ ++P +KF + A
Sbjct: 537 LFSKALQPVLDKLRTQQAYWGRDPMALTPYGLTVARQEWMRSPSGRSANAGVKF-MINAI 595
Query: 380 FGALITLYHIRRLLSSHGIRPAYEML---EEKLKQGSFARFMSKNEDIRKVKLLMQQS-- 434
F L +L H LL HGI P Y L + + A++ + D K+LM +
Sbjct: 596 FTVLASLAHAIDLLKYHGIGPFYRNLISFQSSSSEAGGAKYRRQVADCDNFKILMARMRA 655
Query: 435 -------ISHGAQSPKLSKMLEVLVDHF----------KTKDPKHSRVIIFSNFRGSVRD 477
I H PKL + +V+++HF ++P +R+++F++FR S +
Sbjct: 656 WTNNADFIGH----PKLEYLKQVVLNHFMDAGDGAAGATGENPSDTRIMVFAHFRDSAEE 711
Query: 478 IMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLD 537
I+ L +++ F+GQ++ K S+G QK Q ++EKF+ G YN IVATSIGEEGLD
Sbjct: 712 IVRVLKRHEPMIRPHVFVGQAAAKGSEGMDQKTQLDIIEKFKKGTYNTIVATSIGEEGLD 771
Query: 538 IMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
I E+DL++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 772 IGEIDLIVCYDSSASPIRMLQRMGRTGRKRRGNI 805
>gi|169603375|ref|XP_001795109.1| hypothetical protein SNOG_04697 [Phaeosphaeria nodorum SN15]
gi|160706381|gb|EAT88457.2| hypothetical protein SNOG_04697 [Phaeosphaeria nodorum SN15]
Length = 1275
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/503 (40%), Positives = 304/503 (60%), Gaps = 19/503 (3%)
Query: 87 ESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY 145
E H +D EA KTW+YP N+ +RDYQF I + LF+N LVALPTGLGKT IAA ++
Sbjct: 281 EPPTHHALDTEAIKTWVYPTNLGTIRDYQFNIVQRGLFNNLLVALPTGLGKTFIAATIML 340
Query: 146 NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205
N++RW D +IVF AP++PLV QQI+AC +I GIP+ T +TG +SP R+ WK+KRV
Sbjct: 341 NWYRWTKDSQIVFVAPTKPLVAQQIDACFHIAGIPRSQTTMLTGGVSPALRSEEWKSKRV 400
Query: 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTA 265
FF+TPQ L D++ G K LV LV+DEAHRATG YAY + L R+LALTA
Sbjct: 401 FFMTPQTLLNDLKHGYADPKKLVLLVVDEAHRATGAYAYVEVVSFLRRFNQSFRVLALTA 460
Query: 266 TPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW- 324
TPG+ +++Q +ID L IS +E R E+ D+ SYVH+R IE V + +E+ ++
Sbjct: 461 TPGANVESVQKVIDGLDISRVEIRTENSMDICSYVHSRSIEK-HVFQNSDEMEMCMELYS 519
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI 384
++P + ++ + +++ L+P +R+K+ + Q V A F L
Sbjct: 520 HALQPLVNTVNGLNAYWSKNPCDLTPYGCQQARNKWISEAGRHANQGVKSMVNAVFTILA 579
Query: 385 TLYHIRRLLSSHGIRPAYEMLEE-----KLKQGSFARFMSKNEDIRKVKLLMQQSIS--H 437
++ LL HG+ P Y L+E + + + + +E +K+ + +Q ++ +
Sbjct: 580 SISQAMDLLKYHGMGPFYVKLKEFKKESDKSKSKYRKQILDSESFQKLMVRLQGWVTDDN 639
Query: 438 GAQSPKLSKMLEVLVDHF---------KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL 488
PKL + +V++DHF + P +R+++F++FR S +I L +
Sbjct: 640 FVGHPKLEFLQQVILDHFVNAGNGDNVEGAPPSQTRIMVFAHFRDSAEEISRILKRHEPM 699
Query: 489 VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD 548
++ F+GQS+GK S+G SQK Q +E+F+ G +N ++ATSIGEEGLDI EVDL+IC+D
Sbjct: 700 IRPRVFVGQSTGKNSEGMSQKEQLEAIEQFKQGTFNTLIATSIGEEGLDIGEVDLIICYD 759
Query: 549 ANVSPLRMIQRMGRTGRKHDGRI 571
+ SP+RM+QRMGRTGRK G+I
Sbjct: 760 SKASPIRMLQRMGRTGRKRQGKI 782
>gi|440465547|gb|ELQ34866.1| helicase C-terminal domain protein [Magnaporthe oryzae Y34]
Length = 1079
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 216/539 (40%), Positives = 312/539 (57%), Gaps = 41/539 (7%)
Query: 50 ANKKPSTCKQSTLDKFFGNLGPKPQGTEEFNEGSSFDESL-----CHVQIDAEAAKTWIY 104
A + T +Q+TL + P+P GT+ N F L H +D EA KTW+Y
Sbjct: 75 ARNQARTFQQTTLLGRIASQAPEPLGTQPRN-SRVFRADLPPEVPTHHALDPEALKTWVY 133
Query: 105 PVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163
P N+ P+RDYQF+I K LF+NTLVALPTGLGKT IAA VI NFFRW + ++VF AP++
Sbjct: 134 PTNLGPIRDYQFSIVKNGLFNNTLVALPTGLGKTFIAATVILNFFRWTRNAQMVFVAPTK 193
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL 223
PL QQ+EAC NI GIP+ + +TG+ P R + W+ KR+FF+TPQ L D+ G
Sbjct: 194 PLASQQVEACLNIAGIPRSQSTLLTGETKPVLREAEWEGKRLFFMTPQTLMNDLSKGYAD 253
Query: 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYI 283
K +V LV+DEAHRATG+YAY I + R+LALTATPGS + +Q +IDNL +
Sbjct: 254 PKRIVLLVVDEAHRATGDYAYVKVIEFIRRFSKSFRVLALTATPGSTVEGVQDVIDNLGV 313
Query: 284 STLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNR 343
S +E R E D+ +YVH+R+I+ + +E E + I+ + ++P S++S + R
Sbjct: 314 SHVEIRTEESIDIRNYVHSREIDRVVLEPSDEMLRISELFSQALKPLHSKISQQKIYIGR 373
Query: 344 DYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYE 403
D +++ LL +R + + P Q + A F L +L H +LL+ HGIRP Y+
Sbjct: 374 DPMSITTFGLLKARQDWMKGPGRFANQGLKMMLMAIFTILQSLAHAIKLLNYHGIRPFYD 433
Query: 404 ML-------EEKLKQGS-FARFMSKNEDIRKVKLLMQQ--SISHGAQSPKLSKMLEVLVD 453
L E+K ++GS + R + + +++ L + I A PKL+ + + L++
Sbjct: 434 NLVAFRSETEDKGQKGSKYKRQLIGEQSFQEMMDLASKWLKIDGFAGHPKLTHLCDNLLN 493
Query: 454 HF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQ 512
HF + +RVI+FS +R S +I L ++ A+ F+
Sbjct: 494 HFMDAGEGSSTRVIVFSEYRDSAEEITRVLNVHKPMISASLFV----------------- 536
Query: 513 AVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
G +NV+VATSIGEEGLDI +VDL+IC+DA+ SP+RM+QRMGRTGRK G+I
Sbjct: 537 ------EMGIFNVLVATSIGEEGLDIGQVDLIICYDASSSPIRMLQRMGRTGRKRAGKI 589
>gi|225677838|gb|EEH16122.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 1094
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 205/511 (40%), Positives = 299/511 (58%), Gaps = 30/511 (5%)
Query: 86 DESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI 144
+E H Q+D ++WIYP N+ R+YQF IT+ ALF N LVALPTGLGKT IAA V+
Sbjct: 255 NELPTHHQLDLTTIRSWIYPSNLGKRREYQFNITQRALFHNLLVALPTGLGKTFIAATVM 314
Query: 145 YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204
N+FRW + +IVF AP++PLV QQ+ AC I GIP+ T+ +TG +P R W++KR
Sbjct: 315 LNWFRWTKNAQIVFVAPTKPLVSQQVAACFGIAGIPRSQTVMLTGGTAPAIRVEEWQSKR 374
Query: 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264
VFF+TPQ L D++SG K +V LV+DEAHRATG+YAY ++ + R+LALT
Sbjct: 375 VFFMTPQTLINDLKSGHADPKRIVLLVVDEAHRATGSYAYVEVVKFIQRFNNSFRVLALT 434
Query: 265 ATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
ATPGS +++Q +ID L I+ +E R E D+ YVH R +E+ + E +
Sbjct: 435 ATPGSTVESVQEVIDGLNIAKVEIRTEESLDIREYVHARCVEIETFQNSDEMAMCMDLFS 494
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ--IKFGEVEAYFGA 382
+ ++P +L RD L+P L +R ++ ++P +KF + A F
Sbjct: 495 KALQPVLDKLRTQQAYWGRDPMALTPYGLTVARQEWMRSPSGRSANAGVKF-MINAIFTV 553
Query: 383 LITLYHIRRLLSSHGIRPAYEML---EEKLKQGSFARFMSKNEDIRKVKLLMQQS----- 434
L +L H LL HGI P Y L + + A++ + D K+LM +
Sbjct: 554 LASLAHAIDLLKYHGIGPFYRNLISFQSSSSEAGGAKYRRQVADCDNFKILMARMRAWTN 613
Query: 435 ----ISHGAQSPKLSKMLEVLVDHF----------KTKDPKHSRVIIFSNFRGSVRDIMN 480
I H PKL + +V+++HF ++P +R+++F++FR S +I+
Sbjct: 614 NADFIGH----PKLEYLKQVVLNHFMDAGDGAAGATGENPSDTRIMVFAHFRDSAEEIVR 669
Query: 481 ALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIME 540
L +++ F+GQ++ K S+G QK Q ++EKF+ G YN IVATSIGEEGLDI E
Sbjct: 670 VLKRHEPMIRPHVFVGQAAAKGSEGMDQKTQLDIIEKFKKGTYNTIVATSIGEEGLDIGE 729
Query: 541 VDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+DL++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 730 IDLIVCYDSSASPIRMLQRMGRTGRKRRGNI 760
>gi|320033351|gb|EFW15299.1| ATP-dependent DNA helicase MPH1 [Coccidioides posadasii str.
Silveira]
Length = 1104
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 230/588 (39%), Positives = 323/588 (54%), Gaps = 39/588 (6%)
Query: 15 DDEFDWEAAVREI---DTACQSSKPSTS-NSTNFNLCSKANKKPSTCKQSTLDKFFGNLG 70
DD FD+E E + SS+P S N+T S++ ++ +Q+TL F +
Sbjct: 220 DDAFDFEPEFTETADKEPILISSQPRPSQNTTRRPTASQS----TSFRQTTLLGGFASSS 275
Query: 71 PKP--QGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVR-DYQFAITKTALFSNTL 127
K Q + SS +E H +++ +A +TWI+P N+ R +YQF I ALF N L
Sbjct: 276 SKRSSQPATQTWPSSSRNEPPTHHELNKDALRTWIFPKNLGSRREYQFNIAHRALFHNLL 335
Query: 128 VALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDM 187
VALPTGLGKT IAA V+ N+F W D +IVF AP++PLV QQ++AC +I GIP+ T +
Sbjct: 336 VALPTGLGKTFIAATVMLNWFHWTKDAQIVFVAPTKPLVSQQVDACFHIAGIPRSQTTLL 395
Query: 188 TGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTA 247
TG P RA W++KRVFF+TPQ + D+++G K +V LV+DEAHRATG YAY
Sbjct: 396 TGNTPPGVRAEEWRSKRVFFMTPQTIVNDLKTGIADPKRIVLLVVDEAHRATGAYAYVEI 455
Query: 248 IRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIEL 307
++ L R+LALTATPG+ + +Q +ID L IS +E R E D+ +VH R +E
Sbjct: 456 VKFLQRFNNSFRVLALTATPGATVEAVQEVIDGLSISRIEIRTEKSLDIRGFVHQRNVET 515
Query: 308 IEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPN 367
I E ++ + + ++P RL RD L+P L +R ++ +P
Sbjct: 516 ITFENSRDMITSMELFAKALQPVVDRLRNQNAYWGRDPMALTPFGLTKARQEWNSSPAGR 575
Query: 368 LPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAYEML----EEKLKQGSFARFMSKNE 422
G + + F L +L H LL HGI P Y L + LK+ + S+
Sbjct: 576 AASWPVKGTINSMFTVLASLAHAIDLLKYHGIGPFYRNLVSFEDSVLKEKKGGKCASQIV 635
Query: 423 DIRKVKLLM---------QQSISHGAQSPKLSKMLEVLVDHFKTKDPK----------HS 463
K+LM ++ I H PKL + +++HF K ++
Sbjct: 636 ADGNFKVLMSKLRSWTNTEEFIGH----PKLEYLRRAILNHFLDAGGKNDGDSEGSDSNT 691
Query: 464 RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGY 523
RV+IFS+FR S +I+ L V+ FIGQ++ K S+G QK Q V+ KF+ G Y
Sbjct: 692 RVMIFSHFRDSAEEIVRVLRKHQPFVRPHVFIGQANAKGSEGMDQKTQLEVVGKFKTGTY 751
Query: 524 NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
N IVATSIGEEGLDI EVDL+IC+D + SP+RM+QRMGRTGRK G I
Sbjct: 752 NTIVATSIGEEGLDIGEVDLIICYDGHSSPIRMLQRMGRTGRKRAGNI 799
>gi|303323073|ref|XP_003071528.1| DEAD/DEAH box helicase domain containing protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240111230|gb|EER29383.1| DEAD/DEAH box helicase domain containing protein [Coccidioides
posadasii C735 delta SOWgp]
Length = 1104
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 230/588 (39%), Positives = 323/588 (54%), Gaps = 39/588 (6%)
Query: 15 DDEFDWEAAVREI---DTACQSSKPSTS-NSTNFNLCSKANKKPSTCKQSTLDKFFGNLG 70
DD FD+E E + SS+P S N+T S++ ++ +Q+TL F +
Sbjct: 220 DDAFDFEPEFTETADKEPILISSQPRPSQNTTRRPTASQS----TSFRQTTLLGGFASSS 275
Query: 71 PKP--QGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVR-DYQFAITKTALFSNTL 127
K Q + SS +E H +++ +A +TWI+P N+ R +YQF I ALF N L
Sbjct: 276 SKRSSQPATQTWPSSSRNEPPTHHELNKDALRTWIFPKNLGSRREYQFNIAHRALFHNLL 335
Query: 128 VALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDM 187
VALPTGLGKT IAA V+ N+F W D +IVF AP++PLV QQ++AC +I GIP+ T +
Sbjct: 336 VALPTGLGKTFIAATVMLNWFHWTKDAQIVFVAPTKPLVSQQVDACFHIAGIPRSQTTLL 395
Query: 188 TGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTA 247
TG P RA W++KRVFF+TPQ + D+++G K +V LV+DEAHRATG YAY
Sbjct: 396 TGNTPPGVRAEEWRSKRVFFMTPQTIVNDLKTGIADPKRIVLLVVDEAHRATGAYAYVEI 455
Query: 248 IRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIEL 307
++ L R+LALTATPG+ + +Q +ID L IS +E R E D+ +VH R +E
Sbjct: 456 VKFLQRFNNSFRVLALTATPGATVEAVQEVIDGLSISRIEIRTEKSLDIRGFVHQRNVET 515
Query: 308 IEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPN 367
I E ++ + + ++P RL RD L+P L +R ++ +P
Sbjct: 516 ITFENSRDMITSMELFAKALQPVVDRLRNQNAYWGRDPMALTPFGLTKARQEWNSSPAGR 575
Query: 368 LPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAYEML----EEKLKQGSFARFMSKNE 422
G + + F L +L H LL HGI P Y L + LK+ + S+
Sbjct: 576 AASWPVKGTINSMFTVLASLAHAIDLLKYHGIGPFYRNLVSFEDSVLKEKKGGKCASQIV 635
Query: 423 DIRKVKLLM---------QQSISHGAQSPKLSKMLEVLVDHFKTKDPK----------HS 463
K+LM ++ I H PKL + +++HF K ++
Sbjct: 636 ADGNFKVLMSKLRSWTNTEEFIGH----PKLEYLRRAILNHFLDAGGKNDGDSEGSDSNT 691
Query: 464 RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGY 523
RV+IFS+FR S +I+ L V+ FIGQ++ K S+G QK Q V+ KF+ G Y
Sbjct: 692 RVMIFSHFRDSAEEIVRVLRKHQPFVRPHVFIGQANAKGSEGMDQKTQLEVVGKFKTGTY 751
Query: 524 NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
N IVATSIGEEGLDI EVDL+IC+D + SP+RM+QRMGRTGRK G I
Sbjct: 752 NTIVATSIGEEGLDIGEVDLIICYDGHSSPIRMLQRMGRTGRKRAGNI 799
>gi|119189445|ref|XP_001245329.1| hypothetical protein CIMG_04770 [Coccidioides immitis RS]
gi|121921995|sp|Q1DY43.1|MPH1_COCIM RecName: Full=ATP-dependent DNA helicase MPH1
gi|392868234|gb|EAS33985.2| ATP-dependent DNA helicase MPH1 [Coccidioides immitis RS]
Length = 1110
Score = 385 bits (988), Expect = e-103, Method: Compositional matrix adjust.
Identities = 230/592 (38%), Positives = 323/592 (54%), Gaps = 47/592 (7%)
Query: 15 DDEFDWEAAVREI---DTACQSSKPSTS-NSTNFNLCSKANKKPSTCKQSTLDKFFGNLG 70
DD FD+E E + SS+P S N+T S++ ++ +Q+TL F +
Sbjct: 226 DDAFDFEPEFTETADKEPILISSQPRPSQNTTRRPTASQS----TSFRQTTLLGGFASSS 281
Query: 71 PKP--QGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVR-DYQFAITKTALFSNTL 127
K Q + SS +E H +++ +A +TWI+P N+ R +YQF I ALF N L
Sbjct: 282 SKRSSQPATQTWPSSSRNEPPTHHELNKDALRTWIFPKNLGSRREYQFNIAHRALFHNLL 341
Query: 128 VALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDM 187
VALPTGLGKT IAA V+ N+F W D +IVF AP++PLV QQ++AC +I GIP+ T +
Sbjct: 342 VALPTGLGKTFIAATVMLNWFHWTKDAQIVFVAPTKPLVSQQVDACFHIAGIPRSQTTLL 401
Query: 188 TGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTA 247
TG P RA W++KRVFF+TPQ + D+++G K +V LV+DEAHRATG YAY
Sbjct: 402 TGNTPPGVRAEEWRSKRVFFMTPQTIMNDLKTGIADPKRIVLLVVDEAHRATGAYAYVEI 461
Query: 248 IRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIEL 307
++ L R+LALTATPG+ + +Q +ID L IS +E R E D+ +VH R +E
Sbjct: 462 VKFLQRFNNSFRVLALTATPGATVEAVQEVIDGLSISRIEIRTEKSLDIRGFVHQRNVET 521
Query: 308 IEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPN 367
I E ++ + + ++P RL RD L+P L +R ++ +P
Sbjct: 522 ITFENSRDMITSMELFAKALQPVVDRLRNQNAYWGRDPMALTPFGLTKARQEWNSSPAGR 581
Query: 368 LPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAYE--------MLEEK---------L 409
G + + F L +L H LL HGI P Y +L+EK +
Sbjct: 582 AASWPVKGTINSMFTVLASLAHAIDLLKYHGIGPFYRNLVSFEDSVLKEKKGGKCASQIV 641
Query: 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPK-------- 461
G+F MSK ++ I H PKL + +++HF K
Sbjct: 642 ADGNFKVLMSKLRSWTNT----EEFIGH----PKLEYLRRAILNHFLDAGGKNGGDSEGS 693
Query: 462 --HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
++RV+IFS+FR S +I+ L V+ F+GQ++ K S+G QK Q V+ KF+
Sbjct: 694 DSNTRVMIFSHFRDSAEEIVRVLRKHQPFVRPHVFVGQANAKGSEGMDQKTQLEVVGKFK 753
Query: 520 AGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
G YN IVATSIGEEGLDI EVDL+IC+D + SP+RM+QRMGRTGRK G I
Sbjct: 754 TGTYNTIVATSIGEEGLDIGEVDLIICYDGHSSPIRMLQRMGRTGRKRAGNI 805
>gi|350638094|gb|EHA26450.1| hypothetical protein ASPNIDRAFT_171821 [Aspergillus niger ATCC
1015]
Length = 858
Score = 385 bits (988), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/525 (40%), Positives = 305/525 (58%), Gaps = 33/525 (6%)
Query: 73 PQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALP 131
P+G + ++ + H +++ EA TW+YP N+ RDYQF I + LF N LVALP
Sbjct: 18 PRGEQVYSPPEKSEPPTQH-KLNQEALGTWVYPTNLGKTRDYQFNIAQKGLFHNLLVALP 76
Query: 132 TGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQI 191
TGLGKT IAA ++ N+FRW D +IVF AP++PLV QQI AC + GIP+ T +TG+
Sbjct: 77 TGLGKTFIAATIMLNWFRWTKDAQIVFVAPTKPLVAQQISACFEVAGIPRSQTTMLTGEA 136
Query: 192 SPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIREL 251
+P RA WK KRVFF+TPQ L D+++G K +V +V+DEAHRATG YAY ++ L
Sbjct: 137 APGIRAEEWKAKRVFFMTPQTLINDLKTGIADPKRIVLVVVDEAHRATGGYAYVEVVKFL 196
Query: 252 MSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVE 311
R+LALTATPGS +++Q +ID L IS +E R E D+ YVH++ ++ +
Sbjct: 197 RRYNQSFRVLALTATPGSTVESVQAVIDGLDISRVEIRTEQSLDIREYVHSKDTDVQTFQ 256
Query: 312 MGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQI 371
+E V + + + ++P +L + RD L+ L +R ++ +
Sbjct: 257 NSEEMVLCMDLMSKALQPLLDQLRSTNAYWGRDPMGLTAYGLTKARQQWMLSDSGR--NA 314
Query: 372 KFG---EVEAYFGALITLYHIRRLLSSHGIRPAYEML------EEKLKQGSFARFMSKNE 422
FG ++ A F L +L H LL HGI P Y L E K G + R + ++E
Sbjct: 315 HFGVKAKMNAIFTVLASLAHGIDLLKYHGITPFYRHLLHFQSNTEGQKGGKYQRQVVQDE 374
Query: 423 DIRKVKLLMQ------QSISHGAQSPKLSKMLEVLVDHF----------KTKDPKHSRVI 466
+K+ +Q + I H PKL + +V+++HF + KD +RV+
Sbjct: 375 SYKKLMNHLQPWTKNPEFIGH----PKLEYLKQVVLNHFMDAGEGSGADENKDQPATRVM 430
Query: 467 IFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVI 526
IF +FR S ++ L +++ F+GQSS K S+G QK Q +++KF+ G YN I
Sbjct: 431 IFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIVQKFKKGTYNTI 490
Query: 527 VATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
VATSIGEEGLDI EVDL++C+D++ SP+RM+QRMGRTGRK G+I
Sbjct: 491 VATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRSGKI 535
>gi|295663599|ref|XP_002792352.1| helicase C-terminal domain-containing protein [Paracoccidioides sp.
'lutzii' Pb01]
gi|226279022|gb|EEH34588.1| helicase C-terminal domain-containing protein [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1135
Score = 385 bits (988), Expect = e-103, Method: Compositional matrix adjust.
Identities = 205/513 (39%), Positives = 300/513 (58%), Gaps = 29/513 (5%)
Query: 83 SSFDESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAA 141
++ +E H Q+D ++WIYP N+ R+YQF IT+ ALF N LVALPTGLGKT IAA
Sbjct: 294 ANHNELPTHHQLDLTTIRSWIYPSNLGKRREYQFNITQRALFHNLLVALPTGLGKTFIAA 353
Query: 142 VVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK 201
V+ N+FRW + +IVF AP++PLV QQ+ AC I GIP+ T+ +TG +P R W+
Sbjct: 354 TVMLNWFRWTKNAQIVFVAPTKPLVSQQVAACFGIAGIPRSQTVMLTGGTAPAIRVEEWQ 413
Query: 202 TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRIL 261
+KRVFF+TPQ L D++SG K +V LV+DEAHRATG+YAY ++ + R+L
Sbjct: 414 SKRVFFMTPQTLINDLKSGHADPKRIVLLVVDEAHRATGSYAYVEVVKFIQRFNNSFRVL 473
Query: 262 ALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINN 321
ALTATPGS +++Q +ID L I+ +E R E D+ YVH R +E+ + E +
Sbjct: 474 ALTATPGSTVESVQEVIDGLNIAKVEIRTEESLDIREYVHARCVEIETFQNSDEMAMCMD 533
Query: 322 RIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ--IKFGEVEAY 379
+ ++P +L RD L+P L +R ++ ++P +KF + A
Sbjct: 534 LFSKALQPVLDKLRTQQAYWGRDPMALTPYGLTVARQEWMRSPAGRSANTGVKF-MINAI 592
Query: 380 FGALITLYHIRRLLSSHGIRPAYEML---EEKLKQGSFARFMSKNEDIRKVKLLMQQS-- 434
F L +L H LL HGI P Y L + + A++ + D K+LM +
Sbjct: 593 FTVLASLAHAIDLLKYHGIGPFYRNLISFQSSSSEAGGAKYRRQVADCDNFKILMARMRA 652
Query: 435 -------ISHGAQSPKLSKMLEVLVDHF---------KTKDPKHSRVIIFSNFRGSVRDI 478
I H PKL + +V+++HF +P +R+++F++FR S +I
Sbjct: 653 WTNNADFIGH----PKLEYLKQVVLNHFMDAGDGAGAAGGNPSDTRIMVFAHFRDSAEEI 708
Query: 479 MNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDI 538
+ L +++ F+GQ++ K S+G QK Q ++EKF+ G YN IVATSIGEEGLDI
Sbjct: 709 VRVLKRHEPMIRPHVFVGQAAAKGSEGMDQKTQLDIIEKFKKGIYNTIVATSIGEEGLDI 768
Query: 539 MEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
E+DL++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 769 GEIDLIVCYDSSASPIRMLQRMGRTGRKRRGNI 801
>gi|425766774|gb|EKV05372.1| DEAD box helicase Mph1, putative [Penicillium digitatum Pd1]
gi|425775427|gb|EKV13699.1| DEAD box helicase Mph1, putative [Penicillium digitatum PHI26]
Length = 1108
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 232/606 (38%), Positives = 327/606 (53%), Gaps = 65/606 (10%)
Query: 6 IPIEINGDDDDEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKF 65
IP E+ + FD ++ + Q + P FN ++P +QSTL
Sbjct: 197 IPFELEDIPEGAFDSSPSLSPVARPVQPAVP------QFNQSRGPIRQPH-LRQSTL--- 246
Query: 66 FGN-------LGPKPQ--GTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNV-PVRDYQF 115
FG LGP+ Q GT E E + H ++ EA +TW+YP N+ RDYQF
Sbjct: 247 FGMIAPSSEILGPRQQDWGTPEKTEPPT------HHKLVKEALETWVYPTNLGKTRDYQF 300
Query: 116 AITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175
IT+ LF N LVALPTGLGKT IAA ++ N+FRW D +I+F AP++PLV QQ+ AC +
Sbjct: 301 NITQAGLFHNLLVALPTGLGKTFIAATIMLNWFRWTKDSQIIFVAPTKPLVSQQVSACLD 360
Query: 176 IVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEA 235
I GIP+ + +TG SP RA WK+KRVFF+TPQ L D+++G K +V LV+DEA
Sbjct: 361 IAGIPRSKSTMLTGGASPGIRAEEWKSKRVFFMTPQTLINDLKTGIADPKRIVLLVVDEA 420
Query: 236 HRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQD 295
HRATG YAY ++ L R+LALTATPGS +++Q +ID L I+ +E R E+ D
Sbjct: 421 HRATGAYAYVEVVKFLRRFNNSFRVLALTATPGSTVESVQAVIDGLDIARVEIRTENSID 480
Query: 296 VSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLN 355
+ YVH R IE+ E + V + + ++P +L + RD L+ L
Sbjct: 481 IREYVHARNIEIETFENSDDMVFCMDLMSTALQPLLDQLRTLNAYWGRDPMGLTAYGLTV 540
Query: 356 SRDKFRQAPPPNLPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAYEML--------- 405
+R ++ Q+ G+V + F L +L H LL HGI P Y +
Sbjct: 541 ARQQWMQSDAGRNAHFGLKGKVNSIFTVLASLAHAIDLLKYHGIVPFYRHVVHFKSNSEG 600
Query: 406 ---------EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF- 455
++ ++ SF + +S E K + I H PKL + V+++HF
Sbjct: 601 QKGGGGKYQKQVVQDESFKKLLSHLEPWSK----NPEFIGH----PKLEYLKSVILNHFM 652
Query: 456 ----------KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKG 505
T P +RV+IF +FR S ++ L +++ F+GQSS K S+G
Sbjct: 653 DRGEGKEVSDGTSQPA-TRVMIFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEG 711
Query: 506 QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
QK Q +++ F+ G YN IVATSIGEEGLDI EVDL++CFD++ SP+RM+QRMGRTGR
Sbjct: 712 MDQKTQLRIIDDFKKGTYNTIVATSIGEEGLDIGEVDLIVCFDSSASPIRMLQRMGRTGR 771
Query: 566 KHDGRI 571
K G I
Sbjct: 772 KRAGNI 777
>gi|259489484|tpe|CBF89793.1| TPA: DNA helicase (Eurofung) [Aspergillus nidulans FGSC A4]
Length = 971
Score = 381 bits (979), Expect = e-102, Method: Compositional matrix adjust.
Identities = 218/584 (37%), Positives = 321/584 (54%), Gaps = 42/584 (7%)
Query: 15 DDEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTL-DKFFGNLGPKP 73
DD FD + ++ S P+T S+A +P +Q+TL D + +P
Sbjct: 72 DDAFDSDLSL---------SPPTTQAPKIPWTTSEARNRPLGVRQTTLFDIAARSSATQP 122
Query: 74 QGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPT 132
++ E +++ +A +TW+YP N+ RDYQF IT+ LF N LVALPT
Sbjct: 123 LVGKQITVPPDKVEPPTQHKLNQDALETWVYPTNLGKTRDYQFNITQKGLFYNLLVALPT 182
Query: 133 GLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQIS 192
GLGKT IAA ++ N+ RW +I+F AP++PLV QQI AC I GIP+ T +TG+
Sbjct: 183 GLGKTFIAATIMLNWLRWTKSAQIIFVAPTKPLVAQQISACLRIAGIPRSQTTMLTGEAP 242
Query: 193 PTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM 252
P RA WK+KRVFF+TPQ L D++SG K +V LV+DEAHRATG YAY ++ L
Sbjct: 243 PGIRAEEWKSKRVFFMTPQTLTNDLKSGIADPKRIVLLVVDEAHRATGGYAYVEVVKFLR 302
Query: 253 SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM 312
R+LALTATPGS +++Q +ID L I+ +E R E D+ YVH R ++ +
Sbjct: 303 RFNQSFRVLALTATPGSTVESVQAVIDGLDIARVEIRTEHSLDIREYVHARNTDIQTFQN 362
Query: 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK 372
E + + + ++P +L + RD +L+P L +R ++ +
Sbjct: 363 SDEMILCMDLLSSTLQPLVDQLRTLNAFWGRDPMSLTPYGLTKARQQWMLSDAGR--NAH 420
Query: 373 FG---EVEAYFGALITLYHIRRLLSSHGIRPAYEML------EEKLKQGSFARFMSKNED 423
FG ++ A F L ++ H LL HGI P Y L + K G + R + ++E
Sbjct: 421 FGLKNKINAIFTVLASMAHGIDLLKYHGITPLYRHLLHFQSNTDGKKGGKYQRQIVQDEH 480
Query: 424 IRKVKLLMQ------QSISHGAQSPKLSKMLEVLVDHF----------KTKDPKHSRVII 467
+K+ + + I H PKL + +V+++HF ++ +RV+I
Sbjct: 481 FKKLMNYLTPWTRNPEFIGH----PKLEYLRQVVLNHFMDAGEGTHGAGNENQTATRVMI 536
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F +FR S ++ L +++ F+GQSS K S+G QK Q +++KF+ G YN IV
Sbjct: 537 FVHFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIIQKFKKGTYNTIV 596
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
ATSIGEEGLDI EVDL++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 597 ATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNI 640
>gi|330934775|ref|XP_003304700.1| hypothetical protein PTT_17349 [Pyrenophora teres f. teres 0-1]
gi|311318582|gb|EFQ87201.1| hypothetical protein PTT_17349 [Pyrenophora teres f. teres 0-1]
Length = 1322
Score = 381 bits (979), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/503 (40%), Positives = 303/503 (60%), Gaps = 19/503 (3%)
Query: 87 ESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY 145
E H +++ EA KTW+YP N+ +RDYQF I + LF N LVALPTGLGKT IAA +I
Sbjct: 325 EPPTHHKLNPEALKTWVYPTNLGTIRDYQFNIVQRGLFHNLLVALPTGLGKTFIAATIIL 384
Query: 146 NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205
N+FRW D +IVF AP++PLV QQIEAC+ I GIP+ T +TG + RA WK KRV
Sbjct: 385 NWFRWTLDAQIVFVAPTKPLVAQQIEACYKIAGIPRSCTTMLTGGVQTGLRAEEWKEKRV 444
Query: 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTA 265
FF+TPQ L D++SG K +V LV+DEAHRATG YAY + L R++ALTA
Sbjct: 445 FFMTPQTLLNDLKSGYADPKRIVLLVVDEAHRATGAYAYVEVVSFLRRFNTSFRVVALTA 504
Query: 266 TPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW- 324
TPG+ +++Q +ID L IS +E R E+ D+ SYVH RKIE +V + +E+ ++
Sbjct: 505 TPGADVESVQKVIDGLEISRVEIRTENSMDICSYVHQRKIEK-QVFQNTDEMEMCMDLYS 563
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI 384
E ++P + ++ + +++ + L+P ++ K+ N + V F L
Sbjct: 564 EALQPLVNTIAGLNAYWSKNPRDLTPFGCQQAKKKWFMEIGRNANRGLQSTVYTIFAILA 623
Query: 385 TLYHIRRLLSSHGIRPAY----EMLEEKLKQGS-FARFMSKNEDIRKVKLLMQQSIS--H 437
++ H LL +G+ P Y E +E K S + + + ++ +K+ + ++ I+ +
Sbjct: 624 SISHGMDLLKFYGMGPFYVKMKEFQDEATKTKSKYKKQILDSDAWKKLMVRLEGWIADDN 683
Query: 438 GAQSPKLSKMLEVLVDHFKTKD---------PKHSRVIIFSNFRGSVRDIMNALATIGDL 488
PKL + +V++DHF P +R+++F++FR S +I L +
Sbjct: 684 FVGHPKLDYLQQVILDHFVNAGDGRNVDGAPPSQTRIMVFAHFRDSAEEIARILKRHEPM 743
Query: 489 VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD 548
++ F+GQ+ GK S+G +QK Q +EKF+ G +N ++ATSIGEEGLDI EVDL+IC+D
Sbjct: 744 IRPRIFVGQAHGKNSEGMTQKDQLEAVEKFKIGEFNTLIATSIGEEGLDIGEVDLIICYD 803
Query: 549 ANVSPLRMIQRMGRTGRKHDGRI 571
+ SP+RM+QRMGRTGRK GRI
Sbjct: 804 SKASPIRMLQRMGRTGRKRQGRI 826
>gi|449550734|gb|EMD41698.1| hypothetical protein CERSUDRAFT_128720 [Ceriporiopsis subvermispora
B]
Length = 1302
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 202/503 (40%), Positives = 291/503 (57%), Gaps = 32/503 (6%)
Query: 95 DAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
D AA+ W+YP+N P RDYQF I K LF NTLV+LPTGLGKT IA VV+ NF+ WFP+G
Sbjct: 212 DLLAARRWLYPLNQPKRDYQFNIVKHCLFENTLVSLPTGLGKTFIAGVVMLNFYTWFPEG 271
Query: 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLE 214
K+VF AP++PLV QQI+ACH GIP ++TG+ S KR+ W KRVF++TPQ L
Sbjct: 272 KVVFVAPTKPLVAQQIDACHRTCGIPGSHAAELTGETSRIKRSGLWDEKRVFYMTPQTLM 331
Query: 215 KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTI 274
D+ S C +V LVIDEAH+ +G+YAY +R +M+ R+LALTATPG + +
Sbjct: 332 SDLTSDNCDPGRIVLLVIDEAHKGSGDYAYAQVVRFMMAKNPHFRVLALTATPGGNPEAV 391
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL 334
Q I+D L+IS +E R+E D+ SY+H + I+ +++ E +I + + V++P +L
Sbjct: 392 QAIVDALHISHVEIRDEKSMDLHSYMHKKHIQQHCIKLSDELNKIKDLLAAVMQPMIKQL 451
Query: 335 SAIGLLQNRDYQTLSPVDLLNSRD--KFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392
+ G+L N + TL K ++APP + + L L
Sbjct: 452 QSNGILHNAEASTLHHFRCRTGMGEIKTKRAPP---------YLSGFLNRLQPLARAMSY 502
Query: 393 LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQS----PKLSKML 448
L + Y L + S + S + + + LM + S + PK+ K+
Sbjct: 503 LFEASMEMCYTALHDIATGDSDPKKNSATQKEKAFQTLMSEVRSMKQRGFPLHPKMEKLQ 562
Query: 449 EVLVDHFKT----KDPK-----------HSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
E+LV HF KD + SR I+F +FR V +++ L+ L++AT
Sbjct: 563 ELLVQHFAKEMLDKDERTPGQQAADSAAESRAIVFVSFRQCVDEVVELLSHHNPLIRATR 622
Query: 494 FIGQSSG-KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
FIGQ + K KG +QK Q ++ KF+ G +NV+V+TSIGEEGLDI EVDL++C+DA +
Sbjct: 623 FIGQGTDTKGRKGHTQKEQLEIINKFKTGEFNVLVSTSIGEEGLDIGEVDLIVCYDAQKT 682
Query: 553 PLRMIQRMGRTGRKHDGRIPHIF 575
P+RM+QR+GRTGRK DG + H+
Sbjct: 683 PIRMLQRVGRTGRKKDGYV-HVL 704
>gi|443895514|dbj|GAC72860.1| DEAD-box like helicase [Pseudozyma antarctica T-34]
Length = 1464
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 217/529 (41%), Positives = 306/529 (57%), Gaps = 59/529 (11%)
Query: 93 QIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP 152
+ID EAAKTWIYP N+ RDYQ+ I + ALF+N LVALPTGLGKT IAAVVI NFFRWFP
Sbjct: 246 KIDLEAAKTWIYPTNMERRDYQYNIVQKALFNNVLVALPTGLGKTFIAAVVILNFFRWFP 305
Query: 153 DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQV 212
DGKIVF AP++PLV QQ ACH I G+P + ID+TG + +RA +W+TKR+F++TPQ
Sbjct: 306 DGKIVFLAPTKPLVDQQKTACHRICGLPWDCAIDLTGNTNSERRADYWRTKRIFYMTPQT 365
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQ 272
++ DIQ + +VC+V+DEAHRA G YAY I ++M V R+LAL+ATPG
Sbjct: 366 IDNDIQYNRFDRRDIVCVVVDEAHRARGRYAYGNVIGQIMEVNPHFRVLALSATPGKDSD 425
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332
++Q ++D L+I+ +E R E DV Y+ ++ E++ V +G++ ++ + ++++
Sbjct: 426 SVQEVVDQLHINQIEIRTEEAIDVQRYMFRKREEIVNVPLGKDLNKVKDNWAKLMQTQMD 485
Query: 333 RLSAIGLLQNRDYQTLSPVDL-LNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRR 391
L GLL+N+D L P + SRD+ R + P ++ E AL Y
Sbjct: 486 PLLKAGLLRNQDPVFLHPFAVNAISRDQSRAGILKSKPFLRANISELAQMALSMQY---- 541
Query: 392 LLSSHGIRPAYEMLEEK-------------LKQGSFARFMSK-NEDIRKVKLLMQQSISH 437
L Y L+E+ KQ ++A S NE +R+++++ Q
Sbjct: 542 -LMEQSPTMFYNRLKERSLGYNSKGKKTSTSKQQTYANTNSTFNEIMRELEIM--QDTKG 598
Query: 438 GAQSPKLSKMLEVLVDHFKTKD---------------------PKHS------------- 463
PK+ K++EVL +HFK PK S
Sbjct: 599 RILHPKMLKLVEVLGEHFKRCQEERMHNAEAYTESGHNVYGCTPKSSDLSQLNDLSQADT 658
Query: 464 RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGK-ASKGQSQKVQQAVLEKFRAGG 522
RV++F ++R +I++ L G KATEF+GQS K KG SQK Q+ V+ F+AG
Sbjct: 659 RVMVFCSYRECCDEIVSFLNDSG--FKATEFVGQSKAKNGKKGMSQKDQERVINDFKAGK 716
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
YNV+VATSIGEEGLDI VDL C++A +RM+QR+GRTGRK +G+I
Sbjct: 717 YNVLVATSIGEEGLDIGSVDLTACYEAVKDSIRMLQRIGRTGRKREGKI 765
>gi|213406229|ref|XP_002173886.1| ATP-dependent 3' to 5' DNA helicase [Schizosaccharomyces japonicus
yFS275]
gi|212001933|gb|EEB07593.1| ATP-dependent 3' to 5' DNA helicase [Schizosaccharomyces japonicus
yFS275]
Length = 812
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 217/579 (37%), Positives = 319/579 (55%), Gaps = 45/579 (7%)
Query: 19 DWEAAVRE----------IDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGN 68
DWEA V ++ C+S+K +T KP KQ TLD
Sbjct: 52 DWEAVVLGNTDQLDEQILLNDTCRSTKENTPT------------KPQ--KQLTLDGSIDK 97
Query: 69 LGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLV 128
E EG + H +D A WIYP VP+R YQ+ + +ALF+N L+
Sbjct: 98 RQTYVAKRIEVKEGQ-----ITHY-LDRSLAAHWIYPTCVPLRQYQYNFSASALFNNVLL 151
Query: 129 ALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMT 188
ALPTGLGKT IAAVV+ N++RWFP I F AP++PL+ QQ++AC ++ GIP+ +++
Sbjct: 152 ALPTGLGKTFIAAVVMMNYYRWFPQSNIAFLAPTKPLLYQQMQACIHLTGIPESSIVELN 211
Query: 189 GQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAI 248
G++ P R ++ KRVFFVTPQ L DIQ+ C + VCLV DEAHRATG + Y +
Sbjct: 212 GEVKPELRKQLFRDKRVFFVTPQTLNNDIQTEVCDPRLFVCLVFDEAHRATGLHPYAQVL 271
Query: 249 RELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELI 308
R ++ R+LALTATPGS IQ ++D L+IS + RN+ D+ Y+H + + +
Sbjct: 272 RSVLRYNTSFRVLALTATPGSNATQIQKVVDALHISKIIIRNDDSLDIRPYIHTKCVRTV 331
Query: 309 EVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNR--DYQTLSPVDLLNS-RDKFRQAPP 365
+ + + +P+ L A L DY L + + R +
Sbjct: 332 SFTLNDLMQRVQTTFAGLYKPFFQFLKACKALPKSMTDYVHLRSFPVYRACRSYAMSSTR 391
Query: 366 PNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARF-----MSK 420
N K +V + F ALIT H+ LL HG+ YE L E KQ F +S
Sbjct: 392 ANASHRK--KVLSAFHALITCTHLVYLLECHGLSQFYEKLVEIQKQAREKGFGELYQLSC 449
Query: 421 NEDIRKVKLLMQQSISHGA--QSPKLSKMLEVLVDHF--KTKDPKHSRVIIFSNFRGSVR 476
N + + +Q+ IS PK+ K+ E+L HF +++ +++RV+IF+ FR +
Sbjct: 450 NTQYQLLIEYLQEEISKDGYISHPKIEKLKELLEKHFTKASQEKQNTRVMIFTEFRSTAE 509
Query: 477 DIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGL 536
IM +LAT D V+ + F+GQ+S S G SQK+Q+ +L+++R+G N ++ATSIGEEGL
Sbjct: 510 IIMESLATFDDCVRPSLFVGQASRSESFGMSQKLQKEILQRYRSGLINTLIATSIGEEGL 569
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
DI + D++IC+D + SP+RM+QR+GRTGRK +G + +IF
Sbjct: 570 DIQDTDMIICYDVSSSPIRMLQRIGRTGRKRNG-LAYIF 607
>gi|409044027|gb|EKM53509.1| hypothetical protein PHACADRAFT_125288 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1460
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 209/528 (39%), Positives = 299/528 (56%), Gaps = 66/528 (12%)
Query: 92 VQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF 151
+Q D AA+ W+YP+N RDYQF I K LF NTLVALPTGLGKT IA VV+ NFF WF
Sbjct: 219 LQSDMLAARRWLYPLNQEKRDYQFNIVKRCLFENTLVALPTGLGKTFIAGVVMLNFFTWF 278
Query: 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQ 211
P+GK+VF AP++PLV QQIEACH GIP ++TGQ RA W+ KRVF++TPQ
Sbjct: 279 PEGKVVFVAPTKPLVAQQIEACHKTCGIPGSHAAELTGQNPRAYRAKAWQEKRVFYMTPQ 338
Query: 212 VLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQ 271
L D+++ C + +V LVIDEAH+ TG+YAY +R LM+ R+LALTATPG K
Sbjct: 339 TLMNDLKTDNCDPRDIVLLVIDEAHKGTGDYAYAQVVRYLMAKNPHFRVLALTATPGGKP 398
Query: 272 QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYT 331
+ +Q I+D+L+IS +E R+E D++ Y+H + I + M + +I + + EV+ P
Sbjct: 399 EAVQMIVDSLHISHVEIRDEQSLDLAPYLHKKHIRQHVIHMTDDVAKIRDMLGEVMEPMI 458
Query: 332 SRLSAIGLLQNRDYQTLSPV------------DLLNSRDKFRQAPPPNLPQIKFGEVEAY 379
++LS +L Y + +PV L RD+ R A
Sbjct: 459 TKLSKQKIL----YHSPTPVCLHPYSCTKAMSALHARRDRARWA---------------- 498
Query: 380 FGALITLYHIRRLLS---SHGIRPAYEMLEE---------------KLKQGSFARFMSKN 421
FG L L + R++ + Y+ L+E K K F +
Sbjct: 499 FGMLTKLGALARIMGYLIEGSLEQCYDALKELCSGVNETTGKQTATKAKADRFGKDEKLQ 558
Query: 422 EDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKD-------------PKHSRVIIF 468
+ + +++ + + GA PK+ K+ +LV+HF K SRV++F
Sbjct: 559 QIVAELERMHARPGGFGAH-PKMEKLKTLLVEHFAQKGFEAEGHGAGDGELNSDSRVMVF 617
Query: 469 SNFRGSVRDIMNALATIGDLVKATEFIGQSSGK-ASKGQSQKVQQAVLEKFRAGGYNVIV 527
++FR SV I +AL L++A FIGQ K KG QK Q ++++F+AG +NV+V
Sbjct: 618 TSFRQSVELITDALNKDRPLIRAVPFIGQGVDKHGKKGYGQKEQLEIIKRFKAGEFNVLV 677
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
+TSIGEEGLDI E+D++ C+DA +P+RM+QR+GRTGRK DG + H+
Sbjct: 678 STSIGEEGLDIGEIDMIACYDAQKTPIRMLQRIGRTGRKRDGYV-HVL 724
>gi|388851457|emb|CCF54859.1| related to MPH1-Member of the DEAH family of helicases [Ustilago
hordei]
Length = 1522
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 218/527 (41%), Positives = 305/527 (57%), Gaps = 55/527 (10%)
Query: 93 QIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP 152
+ID EAAKTWIYP N+ RDYQ+ I + ALF+N LVALPTGLGKT IAAVVI NFFRWFP
Sbjct: 271 KIDVEAAKTWIYPTNMEKRDYQYNIVQKALFNNVLVALPTGLGKTFIAAVVILNFFRWFP 330
Query: 153 DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQV 212
+GKI+F APSRPLV QQ ACH I G+P + ID+TGQ S +R FW++KR+F++TPQ
Sbjct: 331 EGKILFLAPSRPLVDQQKVACHKICGLPWDCAIDLTGQTSIKRRGYFWQSKRIFYMTPQT 390
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQ 272
LE DI C +VC+V+DEAHRA G YAY AI LM V R+LAL+ATPG
Sbjct: 391 LENDIHYDRCDPLDVVCVVVDEAHRARGKYAYGNAIGMLMEVNPHFRVLALSATPGKDSV 450
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332
++Q ++D L+I+ +E R E DV Y+ ++ E++ V +G++ ++ + +++
Sbjct: 451 SVQEVVDQLHINQIEIRTEEAIDVQRYMFRKREEIVNVTLGRDLNKVKDNWAKLMMTQMD 510
Query: 333 RLSAIGLLQNRDYQTLSPVDLLN-SRDKFRQAPPPNLPQIKFGEVEAYFGALI------- 384
L GL++N+D L P + +D R A + P ++ E AL
Sbjct: 511 PLMKAGLIRNQDPVFLHPFAVNRIYKDPNRAAIIASKPYLRANISELAAMALSMQYLMEQ 570
Query: 385 --TLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQS---ISHGA 439
T+++ R S G+ + KQ +A + ++I + LMQ + I H
Sbjct: 571 SPTMFYSRLKERSMGMNDKGKKTSS-TKQQIYANINTTFKEIMRELELMQDNKGRILH-- 627
Query: 440 QSPKLSKMLEVLVDHFKT---------------------KDPKH-------------SRV 465
PK+ K+ VL++HF + PK +RV
Sbjct: 628 --PKMIKLRNVLIEHFDSFKAEQLQNAEAYAESGHDVFGNTPKSGELANFTNSSQADTRV 685
Query: 466 IIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKAS-KGQSQKVQQAVLEKFRAGGYN 524
++F ++R V +I++ L G KATEF+GQS GK+ KG SQK Q+ V+ F+ G YN
Sbjct: 686 MVFCSYRECVDEIVSYLNDSG--FKATEFVGQSKGKSGKKGMSQKDQERVIADFKVGKYN 743
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
V+VATSIGEEGLDI VDL C++A +RM+QR+GRTGRK +G+I
Sbjct: 744 VLVATSIGEEGLDIGSVDLTACYEAVKDSIRMLQRIGRTGRKREGKI 790
>gi|398401820|ref|XP_003853191.1| hypothetical protein MYCGRDRAFT_41278, partial [Zymoseptoria
tritici IPO323]
gi|339473073|gb|EGP88167.1| hypothetical protein MYCGRDRAFT_41278 [Zymoseptoria tritici IPO323]
Length = 963
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/515 (39%), Positives = 302/515 (58%), Gaps = 38/515 (7%)
Query: 86 DESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI 144
+E H ++D + K+W+YP N+ +RDYQ+ I +LF NTLVALPTGLGKT IAA V+
Sbjct: 225 EEPPTHHKLDDKEMKSWVYPTNLGTIRDYQYNIVSRSLFHNTLVALPTGLGKTFIAATVM 284
Query: 145 YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204
N++RW +IVF AP++PL+ QQ++AC+ IVGIP+ T+ MTG+ +P +RA W KR
Sbjct: 285 LNYYRWTTSAQIVFMAPTKPLIAQQLDACYGIVGIPRRDTVLMTGETTPGRRAEEWLEKR 344
Query: 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264
VFF+TPQ + D+++G C K +V LV+DEAH+ATG YAY I + R+LALT
Sbjct: 345 VFFMTPQTVINDLKTGICDPKRVVLLVVDEAHKATGGYAYTEVIAFMRRFNNSFRVLALT 404
Query: 265 ATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
ATPGS + +Q +IDNL I+ +E R E D+ Y H + E + +E I +
Sbjct: 405 ATPGSTVEAVQAVIDNLGIARVELRTEQSIDIRQYTHEKHTETEVFDYSEEQRRIMDLFS 464
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKF------RQAPPPNLPQIKFGEVEA 378
+ ++P +L + G +RD +S L SR K+ R+AP P +K G + A
Sbjct: 465 QAVKPSLEKLCSNGAYWSRDPMAISAYGLTQSRQKWASSEAGRKAPMP----VK-GMLNA 519
Query: 379 YFGALITLYHIRRLLSSHGIRPAY-------EMLEEKLKQGSFARFMSKNEDIRKVKLLM 431
F L L H LL HG+ P Y + + L + A ++ +E K+ +
Sbjct: 520 IFNVLSRLAHNVGLLKFHGVVPFYTGVLSFEKEVTSGLTKSKTAAAIANSEPFVKMMGTI 579
Query: 432 QQS------ISHGAQSPKLSKMLEVLVDHFKTKD---------PKHSRVIIFSNFRGSVR 476
+ I H PKL + EV+++HF P +RV++F+++R S
Sbjct: 580 RSWTNNPDFIGH----PKLEYLREVVLNHFLDAGEGRQGSDVPPSATRVMVFASYRDSTE 635
Query: 477 DIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGL 536
DI L +++ F+GQ++ K S+G QK Q AV++ F++G YN +VATSIGEEGL
Sbjct: 636 DICRVLKRNEPMIRPHVFVGQAASKGSEGMDQKRQNAVIQDFKSGKYNCLVATSIGEEGL 695
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
DI VDL++C+DA+ SP+RM+QR+GRTGRK G++
Sbjct: 696 DIGTVDLIVCYDASSSPIRMLQRIGRTGRKRVGQV 730
>gi|396471223|ref|XP_003838820.1| hypothetical protein LEMA_P024930.1 [Leptosphaeria maculans JN3]
gi|312215389|emb|CBX95341.1| hypothetical protein LEMA_P024930.1 [Leptosphaeria maculans JN3]
Length = 1323
Score = 378 bits (971), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/503 (39%), Positives = 297/503 (59%), Gaps = 17/503 (3%)
Query: 86 DESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI 144
+E H +++ A +TW+YP N+ +RDYQF I + LF+N LVALPTGLGKT IAA ++
Sbjct: 327 EEPPTHHKLNPVATRTWVYPTNLGTIRDYQFNIVQRGLFNNLLVALPTGLGKTFIAATIM 386
Query: 145 YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204
N++RW D +IVF AP++PLV QQ++AC I GIP+ T +TG + RA WK KR
Sbjct: 387 LNWYRWTVDSQIVFVAPTKPLVAQQVQACFKIAGIPRSATTMLTGNVQTGLRAEEWKEKR 446
Query: 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264
VFF+TPQ L+ D++SG K +V LV+DEAHRATG YAY + L R+LALT
Sbjct: 447 VFFMTPQTLQNDLKSGYADPKKIVLLVVDEAHRATGGYAYVEIVSFLRRFNDSFRVLALT 506
Query: 265 ATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
ATPG+ + +Q +ID L IS +E R E+ D+ SYVH R +E + E +
Sbjct: 507 ATPGANVEAVQKVIDGLDISRVEIRTENSMDICSYVHQRSVEKKVFQNSDEMEMCMDLYR 566
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI 384
+ ++P + +S + ++D L+P ++ K+ + Q V A F L
Sbjct: 567 QALQPLVNTISGLNAYWSKDPCDLTPYGCQQAKSKWTLEAGRHANQGVKSIVHAVFAILS 626
Query: 385 TLYHIRRLLSSHGIRPAYEMLE--EKLKQGSFARFMSKNEDIRKVKLLMQQ-----SISH 437
++ LL HGI P + ++ + Q S +++ + D K LM + + +
Sbjct: 627 SISQGMELLKYHGIGPFHVKMKDFQNESQKSKSKYRKQILDSDAWKKLMSRLQGWMTDDN 686
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKH---------SRVIIFSNFRGSVRDIMNALATIGDL 488
PK+ + E +++HF + H +RV++F+NFR S +I L +
Sbjct: 687 FVGHPKMEYLQEAILEHFANAEDGHNANGASSSQTRVMVFANFRDSTDEIARILKRHEPM 746
Query: 489 VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD 548
++ F+GQ++GK S+G +QK Q V+EKF++G YN ++ATSIGEEGLDI EVDL+IC+D
Sbjct: 747 IRPRVFVGQAAGKNSEGMTQKDQLDVIEKFKSGVYNTLIATSIGEEGLDIGEVDLIICYD 806
Query: 549 ANVSPLRMIQRMGRTGRKHDGRI 571
+ SP+RM+QRMGRTGRK +G+I
Sbjct: 807 SKASPIRMLQRMGRTGRKREGKI 829
>gi|326429449|gb|EGD75019.1| hypothetical protein PTSG_07244 [Salpingoeca sp. ATCC 50818]
Length = 2864
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 206/495 (41%), Positives = 292/495 (58%), Gaps = 30/495 (6%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQF++TK L NTLV LPTGLGKT IAAVV+YNF+RW+P GK+VF AP++PLV QQ+
Sbjct: 28 RSYQFSMTKQCLLKNTLVTLPTGLGKTFIAAVVMYNFYRWYPTGKVVFMAPTKPLVAQQV 87
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+AC I+G +E +MTG P R W KRVFF+T +VL+ D++ G+C K VCL
Sbjct: 88 QACFRIMGFDREDVCEMTGNKRPALRKKLWHQKRVFFLTAEVLQNDLRRGSCPAKAFVCL 147
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
V DEAHRA GN+AYC + L S +LRI+ L+ATPG T+Q II NL IS +E R+
Sbjct: 148 VADEAHRALGNHAYCNVVEVLCSHTERLRIIGLSATPGDTIATVQQIITNLRISHIELRS 207
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
ES D+ Y + RK+EL+ ++ E E I +++ + RL+ ++ + +S
Sbjct: 208 ESSIDIRPYTNQRKVELVVIKPSGEVSEFQPTIDKMLGTFLDRLTRARAIRKMNPSKVSS 267
Query: 351 VDLLNSRDKFRQA-PPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
LL +RD FR+ + + VE F I+L + +L +HG+ P Y + L
Sbjct: 268 FALLKARDLFRRGNTATSAAYVHQCVVEGDFAMAISLAYSCTMLRTHGVTPFYRSITSYL 327
Query: 410 ---KQGSFARFMSKNED----IRKVKLLMQQSISHGA--------------------QSP 442
K + M K+++ + K+K +++ +I A P
Sbjct: 328 NGEKNPRLGQQMKKSQEVMNMVAKLKKIVEGAIDTRAVFDGCVSSLCVGPPSCCRLYGHP 387
Query: 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKA 502
KL K+ E++ HF+ K +RVI+FS++R SV DI+N L L++ F+GQ+SGK+
Sbjct: 388 KLEKLEEIVTKHFRETKHKDTRVIVFSSYRDSVVDIVNVLGKHKPLIRVASFVGQASGKS 447
Query: 503 SKGQSQKV--QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+ QK Q AV+ FRAG +N +VAT +GEEGLDI VDL+ICFD+ S R+IQRM
Sbjct: 448 KSKKGQKQSEQIAVVSNFRAGVHNTLVATCVGEEGLDIGHVDLIICFDSKGSSTRLIQRM 507
Query: 561 GRTGRKHDGRIPHIF 575
GRTGRK +GRI +
Sbjct: 508 GRTGRKRNGRIVQLL 522
>gi|255951308|ref|XP_002566421.1| Pc22g25350 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593438|emb|CAP99823.1| Pc22g25350 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1109
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 226/600 (37%), Positives = 324/600 (54%), Gaps = 53/600 (8%)
Query: 6 IPIEINGDDDDEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKF 65
+P E+ + FD ++ + Q + P F+ + ++P +QSTL
Sbjct: 198 VPFELEDIPEGAFDSSPSLSPVARPVQPAGP------QFSQPRGSFRQPH-LRQSTL--- 247
Query: 66 FGNLGPKPQG--TEEFNEGSSFDESL-CHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTA 121
FG + P P+ + + G L ++ +A TW+YP N+ RDYQF IT+
Sbjct: 248 FGMVAPNPEVLVPRQPDWGPPEKTELPTQHKLVKDALDTWVYPTNLGKTRDYQFNITQAG 307
Query: 122 LFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQ 181
LF N LVALPTGLGKT IAA ++ N+FRW D +IVF AP++PLV QQ+ AC +I GIP+
Sbjct: 308 LFHNLLVALPTGLGKTFIAATIMLNWFRWTKDSQIVFVAPTKPLVSQQVSACLDIAGIPR 367
Query: 182 EWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN 241
+ +TG SP RA WK+KRVFF+TPQ L D+++G K +V LV+DEAHRATG
Sbjct: 368 SESTMLTGGASPGIRAEEWKSKRVFFMTPQTLINDLKTGIADPKRIVLLVVDEAHRATGA 427
Query: 242 YAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVH 301
YAY ++ L R+LALTATPGS +++Q +ID L I+ +E R E+ D+ YVH
Sbjct: 428 YAYVEVVKFLRRFNNSFRVLALTATPGSTVESVQAVIDGLDIARVEIRTENSIDIRDYVH 487
Query: 302 NRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFR 361
R IE+ E E + + + ++P +L I RD L+ L +R ++
Sbjct: 488 ARNIEIETFENSDEMIFCMDLMSAALQPLLDQLRTINAYWGRDPMGLTAYGLTVARQQWM 547
Query: 362 QAPPPNLPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAYEML--------------- 405
Q+ G+V + F L +L H LL HGI P Y +
Sbjct: 548 QSDAGRNASFGLKGKVNSIFTVLASLAHAIDLLKYHGIVPFYRHIIHFKSSSEGQKGGGG 607
Query: 406 ---EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF------- 455
++ ++ SF + +S E K + I H PKL + V+++HF
Sbjct: 608 KYQKQVVQDDSFKKLLSHLEPWSK----NPEFIGH----PKLEYLKSVILNHFMDRGEGK 659
Query: 456 ----KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQ 511
T P +RV+IF +FR S ++ L +++ F+GQSS K S+G QK Q
Sbjct: 660 ELPNGTSQPA-TRVMIFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQSSAKGSEGMDQKTQ 718
Query: 512 QAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
++E F+ G YN IVATSIGEEGLDI EVDL++C+D++ SP+RM+QRMGRTGRK G I
Sbjct: 719 LKIIEDFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNI 778
>gi|389742160|gb|EIM83347.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 1322
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 201/523 (38%), Positives = 309/523 (59%), Gaps = 44/523 (8%)
Query: 92 VQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF 151
V+ D A K WI+P+N P RDYQF I+K LF NTLVALPTGLGKT IA VV+ NF+RWF
Sbjct: 3 VEPDLLATKQWIFPLNRPKRDYQFNISKHCLFDNTLVALPTGLGKTFIAGVVMLNFYRWF 62
Query: 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQ 211
PDGKIVF AP++PLV QQI+ACH GIP ++TG + +R W KRVF++TPQ
Sbjct: 63 PDGKIVFVAPTKPLVAQQIDACHQTCGIPGRDAAELTGNVPKAQRNRAWAEKRVFYMTPQ 122
Query: 212 VLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQ 271
L D+ C + +V LVIDEAH+ +G+YAY T +R LM+ R+LALTATPGS
Sbjct: 123 TLFNDLYQNNCDCRDIVLLVIDEAHKGSGDYAYATCVRYLMAKNPHFRVLALTATPGSNP 182
Query: 272 QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYT 331
+ +Q I+D+L+IS +E R+E D+ Y++ +K+E + M + + + I +V++P
Sbjct: 183 EAVQGIVDSLHISRIEIRDEQSWDIRGYINKKKVEQHIITMNDDIARLRDMIGKVMKPML 242
Query: 332 SRLSAIGLLQ-NRD------YQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI 384
+L+ +G+ + N D ++ S + ++ R RQ P +K +V A A+
Sbjct: 243 QKLANVGIFRGNLDPVLFHPFRAQSAMGEIHGRKDGRQL-AWAFPVLK--KVGALARAMG 299
Query: 385 TLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKV--KLLMQQSISHGAQSP 442
L ++L ++ A + K S ++ + + + + +L +Q I A P
Sbjct: 300 YLLEASQMLCHRSLKEAVDGDNNSDKAKSGNNKLTNDPNFQAIMRELDLQAHIGF-AVHP 358
Query: 443 KLSKMLEVLVDHFKTKDPKH-----------------------------SRVIIFSNFRG 473
K+ K+ ++++HF TK P+ +RV++F FR
Sbjct: 359 KMEKLKMLVLNHFGTKLPEEAADANNGEAIGAGVNGVGAGGNKGSEGDDTRVMVFVTFRE 418
Query: 474 SVRDIMNALATIGDLVKATEFIGQSSGKAS-KGQSQKVQQAVLEKFRAGGYNVIVATSIG 532
+V ++ L +++AT+FIGQ + KA KG +QK Q V+++F+ G +NV+V+TSIG
Sbjct: 419 AVEQLVEFLNEESPIIRATKFIGQGADKAGKKGFAQKDQLDVIKRFKQGEFNVLVSTSIG 478
Query: 533 EEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
EEGLDI E+D+++C+++ +P+RM+QR+GRTGRK DG + H+
Sbjct: 479 EEGLDIGEIDMIVCYESQKTPIRMLQRVGRTGRKRDGYV-HVL 520
>gi|392571703|gb|EIW64875.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 1387
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 203/499 (40%), Positives = 292/499 (58%), Gaps = 27/499 (5%)
Query: 95 DAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
D AAKTWIYP+N P RDYQ+ I K L+ NTLVALPTGLGKT IA VV+ N++ WFP G
Sbjct: 219 DRLAAKTWIYPLNKPKRDYQYNIVKKCLYENTLVALPTGLGKTFIAGVVMLNYYNWFPQG 278
Query: 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLE 214
K+VF AP++PLV QQI+ACH GIP ++TG ++ +R + W+ KRVF+ TPQ
Sbjct: 279 KVVFVAPTKPLVAQQIDACHKTCGIPGSAAAELTGNVTKDRRIAAWRDKRVFYATPQTFL 338
Query: 215 KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTI 274
D+ + +V +V+DEAHR TG+YAY +R +M RI+ALTATPGSK + +
Sbjct: 339 NDLINHHVDALDIVLIVVDEAHRGTGDYAYAQVVRYMMQHNPHFRIMALTATPGSKPEAV 398
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL 334
Q I+D L+IS +E RNESD D+ Y+H + V M ++ V I + + ++ P ++
Sbjct: 399 QEIVDALHISHIEIRNESDSDLKKYLHTKHETEHHVHMTEDIVLIRDALASLMTPLIKKV 458
Query: 335 SAIGLLQNRDY--QTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392
A G L+N + L P ++ + ++ PQ G A G L
Sbjct: 459 QAAGFLKNGNTAPSMLHPFRCQSTVGEMAKS---RAPQYAIG-AAAQLGPLARAMG---Y 511
Query: 393 LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRK-------VKLLMQQSISHGAQSPKLS 445
L + I Y L++ + G A S + IRK +K L +Q+ + PK+
Sbjct: 512 LMENSIAMCYGYLKD-IATGGGADDSSSKKAIRKMEGFANLMKELEKQASRGFSMHPKMD 570
Query: 446 KMLEVLVDHFKTKDPK--------HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ 497
+ +L+DHF + P SR ++F +FR V +I+ L +++A FIGQ
Sbjct: 571 TLRTLLIDHFGKELPDPADASGVCKSRAMVFVSFRECVEEIVELLNKESPIIRAKAFIGQ 630
Query: 498 SSGK-ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
+ K KG +QK Q V+E+F+AG YN++V+TSIGEEGLDI EVD+++C+DA +P+RM
Sbjct: 631 GTDKQGKKGYAQKEQLEVIEQFKAGKYNLLVSTSIGEEGLDIGEVDVIVCYDAQKTPIRM 690
Query: 557 IQRMGRTGRKHDGRIPHIF 575
+QR+GRTGRK G + HI
Sbjct: 691 LQRIGRTGRKAAGAV-HIL 708
>gi|392597186|gb|EIW86508.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 1287
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 203/508 (39%), Positives = 306/508 (60%), Gaps = 37/508 (7%)
Query: 92 VQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF 151
+ +D AK WIYP+N P RDYQ+ I + LF NTLVALPTGLGKT IA VV+ N++RWF
Sbjct: 199 LHVDMLEAKHWIYPLNKPRRDYQYNIVRHCLFDNTLVALPTGLGKTFIAGVVMLNYYRWF 258
Query: 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQ 211
P+GK+VF AP++PLV QQI+ACH GIP +++TG R+ W+TKRVF++TPQ
Sbjct: 259 PEGKVVFVAPTKPLVAQQIDACHKTCGIPGSDAVELTGNNPRPYRSQMWETKRVFYMTPQ 318
Query: 212 VLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQ 271
L D+ S C +V LV+DEAH+ TG+YAY +R LM+ R+LALTATPGS
Sbjct: 319 TLLNDLISDNCDPGSIVLLVVDEAHKGTGDYAYAQVVRYLMAKNPHFRVLALTATPGSNP 378
Query: 272 QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQE---AVEINNRIWE-VI 327
+ +Q I+D+L+IS +E RNE+ D+ Y+H ++I+ V M ++ A + R+ E V
Sbjct: 379 EAVQAIVDSLHISRIEIRNEASLDLIEYMHKKEIKQHIVHMSEDIERAKSLLKRVMENVG 438
Query: 328 RPY--TSRLSAIGLLQNRDYQTLSPVDLLNS-RDKFRQAPPPNLPQIKFGEVEAYFGALI 384
+P S L + +++ Y+ + V + + R+ + A GAL
Sbjct: 439 KPLINASILPPLDMVKLHPYRCTALVQQIGAQRNSQKWA----------------MGALS 482
Query: 385 TLYHIRR----LLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQ 440
L ++ R LL S Y L+E S ++ +++ +D + + +Q + HG+
Sbjct: 483 RLSNLARCMGYLLESSASM-CYHSLQEFASGNSASKKIAEGDDFKALARELQTQLDHGSS 541
Query: 441 -SPKLSKMLEVLVDHFKTK------DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
PK+ + ++LV HF T+ + +R ++F FR V +++N L L++AT
Sbjct: 542 LHPKMELLKDLLVQHFGTRMGEDEDGGEDTRAMVFITFRDCVDEVVNVLNQENPLIRATR 601
Query: 494 FIGQSSGKAS-KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
FIGQ + K+ KG +QK Q ++KF+ G +NV+V+TSIGEEGLDI EVD+++C+DA +
Sbjct: 602 FIGQGTDKSGRKGFAQKEQLQTIQKFKDGTFNVLVSTSIGEEGLDIGEVDMIVCYDAQKT 661
Query: 553 PLRMIQRMGRTGRKHDGRIPHIFKPEVQ 580
P+RM+QR+GRTGRK G + H+ E +
Sbjct: 662 PIRMLQRVGRTGRKRAGYV-HVLLAETR 688
>gi|336367421|gb|EGN95766.1| hypothetical protein SERLA73DRAFT_76832 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380136|gb|EGO21290.1| hypothetical protein SERLADRAFT_441648 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1398
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/501 (41%), Positives = 291/501 (58%), Gaps = 27/501 (5%)
Query: 100 KTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159
K WIYP+N P RDYQF I K LF NTLVALPTGLGKT IA VV+ NF+RWFP+GKIVF
Sbjct: 225 KHWIYPLNQPKRDYQFNIVKHCLFENTLVALPTGLGKTFIAGVVMLNFYRWFPEGKIVFI 284
Query: 160 APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS 219
AP++PLV QQI+ACH+ GIP I+MTG + R+ W+ KRVF++TPQ L D+ S
Sbjct: 285 APTKPLVAQQIDACHSTCGIPGHDAIEMTGNNARAYRSHMWEEKRVFYMTPQTLINDLTS 344
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIID 279
C + ++ +VIDEAH+ TG+YAY IR LM+ R+LALTATPGS +Q IID
Sbjct: 345 ENCDPQNIILVVIDEAHKGTGDYAYAQVIRYLMAKNAHFRVLALTATPGSTPDAVQSIID 404
Query: 280 NLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGL 339
+L+IS +E R+E D+ Y+H + I+ + M + +I + + +++ LS+ G+
Sbjct: 405 SLHISRIEIRDEQSLDLRGYMHKKDIKQHIIRMDENVNKIMDLLAKMMEKIARSLSSKGV 464
Query: 340 LQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIR 399
++ + + P + R + PN + FG + L TL L
Sbjct: 465 MEPVNVVKMHPYRMTALRQQLAATNNPN--KWAFGPI----SKLETLSRAMGYLMEASTS 518
Query: 400 PAYEMLEEKLK-------------QGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSK 446
Y L+E K Q + S E ++ + Q I + PK+
Sbjct: 519 MCYTCLQELAKDKEDNSGKGNGKGQKPPNKLRSDPEFQAILREIESQRIRGFSMHPKMEM 578
Query: 447 MLEVLVDHFKT------KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG 500
+ +LV HF ++ +R ++F FR V +I+ L L+KAT FIGQ +
Sbjct: 579 LKTLLVQHFGATMADGEQEGGTTRAMVFVTFRDCVDEIVEVLNEEMPLLKATRFIGQGTD 638
Query: 501 K-ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQR 559
K KG +QK Q VL+KF+AG +NV+V+TSIGEEGLDI EVD++IC+DA +P+RM+QR
Sbjct: 639 KQGRKGFAQKEQIEVLKKFKAGEFNVLVSTSIGEEGLDIGEVDMIICYDAQKTPIRMLQR 698
Query: 560 MGRTGRKHDGRIPHIFKPEVQ 580
+GRTGRK DG + H+ E++
Sbjct: 699 VGRTGRKRDGYV-HVLLSEIR 718
>gi|164656084|ref|XP_001729170.1| hypothetical protein MGL_3637 [Malassezia globosa CBS 7966]
gi|159103060|gb|EDP41956.1| hypothetical protein MGL_3637 [Malassezia globosa CBS 7966]
Length = 869
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 203/495 (41%), Positives = 285/495 (57%), Gaps = 28/495 (5%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
+D E AKTWIYP N P+R YQ I K ALF N LVALPTGLGKT IAAVVI N FRWFP
Sbjct: 219 LDVEQAKTWIYPTNKPLRTYQLNIVKKALFDNVLVALPTGLGKTFIAAVVILNMFRWFPQ 278
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GKI+F AP+RPLV QQ +ACH+I G+P + I++TG T R W KR+F++TPQ
Sbjct: 279 GKIIFVAPTRPLVAQQQQACHSICGLPWDTAIELTGSKKRTLRDDEWHAKRIFYMTPQTF 338
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
E D+ S TC ++C+V+DEAHRATGNYAYC +R LM R+LALTATPG++ +
Sbjct: 339 ENDLLSSTCDPSDVICVVVDEAHRATGNYAYCKVMRHLMYYNPHFRVLALTATPGNRPER 398
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+Q ++ NL+IS +E R E D+ Y+H ++ +++ V + + ++ + ++RP+
Sbjct: 399 VQEVVTNLHISRIEIRTEDALDIQPYLHRKREDVVHVPLSETHAQLRSTWAALMRPHYEA 458
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK-----FGEVEAYFGALITLYH 388
L GLL D P D+ + A P ++ +G ++ + +
Sbjct: 459 LEKHGLLHVND-----PADVRAFTVRSIAAQPHGRAILQSKPFLYGAIQKLANMAQNMQY 513
Query: 389 IRRLLSSHGIRPAYEMLEEKLKQGSFARFM----SKNE-DIRKVKLLMQQS------ISH 437
+ L A +M + R +KN I K+ +QQ I H
Sbjct: 514 LTELSVRLFCDRAIDMFTSTPSKNRHERMQGNASAKNSTSINKLLTYIQQVRDDSGLIVH 573
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ 497
PK+ ++ E+L HF + SR I+F FR V +I+ L I ++AT FIGQ
Sbjct: 574 ----PKMKRLAEILQSHFAREFTHTSRAIVFCTFREVVHEIVELLNQID--LRATPFIGQ 627
Query: 498 SS-GKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
+S K +G SQK Q+ V+ F+ G ++VATSIGEEGLDI EVDL++C+DA +R
Sbjct: 628 ASDSKGHRGLSQKQQEQVVRAFKDGHVQILVATSIGEEGLDIGEVDLIVCYDAVRDSVRG 687
Query: 557 IQRMGRTGRKHDGRI 571
+QR+GRTGR DGR+
Sbjct: 688 LQRIGRTGRMRDGRV 702
>gi|402218846|gb|EJT98921.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 1094
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/497 (39%), Positives = 293/497 (58%), Gaps = 30/497 (6%)
Query: 95 DAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
D A + WIYP+N P+RDYQ+ I + ALF NTLVALPTGLGKT IA V++ N++RWFPDG
Sbjct: 81 DPIAVREWIYPINKPIRDYQYNIVQAALFKNTLVALPTGLGKTFIAGVLMLNYYRWFPDG 140
Query: 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLE 214
K+VF AP++PLV QQI+ACH GIP E I+MTG+ R W +KR+ ++TPQ L+
Sbjct: 141 KVVFVAPTKPLVSQQIKACHETCGIPVEDAIEMTGETPQATRQRHWASKRIVYMTPQTLQ 200
Query: 215 KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTI 274
D+ + ++ LV+DEAH+ATGNYAY T +R +M+ RILALTATPGSK +T+
Sbjct: 201 NDLLREVVDPRDIILLVVDEAHKATGNYAYATVVRFMMAKNPHFRILALTATPGSKPKTV 260
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL 334
Q IID+L++ +E R+E D+ Y+H + +E V+MG I R+ ++ L
Sbjct: 261 QDIIDSLHVGHIEIRDERSLDLKQYIHEKTMEKCVVQMGASINGIKERLLALMENTVKPL 320
Query: 335 SAIGLLQNRDYQTLSPVDLLNSR---DKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRR 391
+ DY ++ + + + D+ R+ P F A L L
Sbjct: 321 RGKDIFP--DYVKVADIHPYSCKKWIDELRRKPQGR----DFPWAAALLMRLHKLTFAMA 374
Query: 392 LLSSHGIRPAYEML----EEKL--KQGS--------FARFMSKNEDIRKVKLLMQQSISH 437
L + AY L +KL K+G F +++ E+ R ++ + H
Sbjct: 375 YLCEESVEMAYNTLLDAAGKKLTTKEGGNKLSNDPKFRDLITEIENYRNERVTGGGPVGH 434
Query: 438 GAQSPKLSKMLEVLVDHFKTKD--PKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFI 495
PK+ K++ V ++HF D +RV++F +R V +I+ +L +++A++F+
Sbjct: 435 ----PKMDKLVAVALEHFAAPDDGADSTRVMVFCQYRDCVDEIVKSLKLQQPIIRASKFV 490
Query: 496 GQSSGK-ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
GQSS K +G +QK Q ++ +F+ G +NV+VATSIGEEGLDI EVDL+IC+D S +
Sbjct: 491 GQSSDKRGDRGMAQKDQIEIIRRFKQGDFNVLVATSIGEEGLDIGEVDLIICYDVQKSSI 550
Query: 555 RMIQRMGRTGRKHDGRI 571
+M+QR+GRTGRK G+I
Sbjct: 551 KMLQRIGRTGRKRSGKI 567
>gi|395334142|gb|EJF66518.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 1297
Score = 371 bits (953), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 196/495 (39%), Positives = 288/495 (58%), Gaps = 29/495 (5%)
Query: 95 DAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
D AAK+WIYP+N P R+YQ+ I K L NTLVALPTGLGKT IA VV+ NF+ WFP G
Sbjct: 154 DRLAAKSWIYPLNKPKREYQYNIVKNCLLENTLVALPTGLGKTFIAGVVMLNFYNWFPQG 213
Query: 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLE 214
K++F AP++PLV QQI+ACH GIP +MTG + KRA+ WKT+RVF+ TPQ
Sbjct: 214 KVIFVAPTKPLVAQQIDACHQTCGIPGSAAAEMTGSVPMAKRANAWKTQRVFYATPQTFL 273
Query: 215 KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTI 274
D+ G +V +VIDEAHR TG+YAY +R +M RILALTATPG K + +
Sbjct: 274 NDLIRGIVDPLDIVLIVIDEAHRGTGDYAYAQVVRYMMQHNPHHRILALTATPGGKPEVV 333
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL 334
Q I+D L+IS +E R+E+D D+ Y+H + + V+M ++ + + + ++ P ++
Sbjct: 334 QEIVDALHISHIEIRSETDPDLKKYLHTKHEQEHFVQMTEDICVLRDALSAMMVPLIKKI 393
Query: 335 SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLS 394
G L+N + Q +L+ P Q GE+ ++ +++
Sbjct: 394 QGAGFLKNGNTQPT----MLH----------PYRCQSTLGEMTKARAPHNGIFGMKQPHM 439
Query: 395 SHGIRPAYEMLE---EKLKQGSFARFMSKNEDIRKVKLLMQQSISHG-AQSPKLSKMLEV 450
I Y L+ E S + + K++ + + ++ + G + PK+ + +
Sbjct: 440 EMSINMCYGFLKGIAEGADDSSGKKAIRKSDAFKSLMAKFEEQAARGLSMHPKMDVLRTL 499
Query: 451 LVDHFKTKDPK---------HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGK 501
L+DHF + P SR ++F +FR V +I+ L +++A FIGQ + K
Sbjct: 500 LIDHFAQRLPDDTDGGARAGESRAMVFVSFRECVEEIVELLNKESPIIRAKPFIGQGTDK 559
Query: 502 -ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
KG +QK Q V+E+F+AG YNV+V+TSIGEEGLDI EVDL++C+DA +P+RM+QR+
Sbjct: 560 QGKKGYAQKEQLEVIEQFKAGKYNVLVSTSIGEEGLDIGEVDLIVCYDAQKTPIRMLQRI 619
Query: 561 GRTGRKHDGRIPHIF 575
GRTGRK G + HI
Sbjct: 620 GRTGRKASGTV-HIL 633
>gi|453082678|gb|EMF10725.1| P-loop containing nucleoside triphosphate hydrolase protein,
partial [Mycosphaerella populorum SO2202]
Length = 847
Score = 371 bits (953), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 202/515 (39%), Positives = 300/515 (58%), Gaps = 38/515 (7%)
Query: 86 DESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI 144
DE H ++D +A TW+YP N+ +RDYQF I +LF NTLVALPTGLGKT IAA V+
Sbjct: 154 DEKATHHKLDEKAMMTWVYPTNLGSIRDYQFNIVSRSLFHNTLVALPTGLGKTFIAATVM 213
Query: 145 YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204
N++RW +IVF AP++PL+ QQ+EAC+ IVGIP++ T+ MTG+ +P RA W KR
Sbjct: 214 LNYYRWTTHAQIVFMAPTKPLIAQQMEACYGIVGIPKKDTVLMTGETTPAARADQWLEKR 273
Query: 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264
VFF+TPQ + D+++G C K V LV+DEAH+ATG YAY ++ L R+LALT
Sbjct: 274 VFFMTPQTVINDLKTGICDPKKFVLLVVDEAHKATGGYAYTEVVQFLRRFNSSFRVLALT 333
Query: 265 ATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
ATPGS + +Q +IDNL I+ +E R ES D+ Y H ++ + E E +
Sbjct: 334 ATPGSTTEAVQAVIDNLGIARVELRTESSLDIRQYTHEKQTDTHVFEFSPEQELVMGLFA 393
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKF------RQAPPPNLPQIKFGEVEA 378
+ +RP ++ + D L+P L +R K+ R+AP P IK G +
Sbjct: 394 KTLRPLLDKVRGQNGYWSNDPLALTPYGLTQARAKWAQSDAGRKAP----PAIK-GMMNV 448
Query: 379 YFGALITLYHIRRLLSSHGIRPAYEM-------LEEKLKQGSFARFMSKNEDIRKVKLLM 431
F L +L H LL HGI P Y +E ++G A + ++ + K+ +
Sbjct: 449 VFNVLASLAHSIGLLKHHGIGPFYSCVLNFQREVESGQQKGKTAANILQDANFVKMMSTI 508
Query: 432 Q------QSISHGAQSPKLSKMLEVLVDHFKTKD---------PKHSRVIIFSNFRGSVR 476
+ + I H PKL + E++++HF P +R+++F+++R S
Sbjct: 509 RTWTNKPEFIGH----PKLEYLREIVLNHFLDAGEGRQGSDVPPSATRIMVFASYRDSTE 564
Query: 477 DIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGL 536
DI L +++ F+GQ++ K +G +QK Q +++ F+ G YN ++ATSIGEEGL
Sbjct: 565 DICRVLKRNEPMIRPHVFVGQAASKGQEGMNQKQQNQIIQDFKGGKYNTLIATSIGEEGL 624
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
DI VDL++C+DA+ SP+RM+QR+GRTGRK G++
Sbjct: 625 DIGTVDLIVCYDASSSPIRMLQRIGRTGRKRTGKV 659
>gi|170086129|ref|XP_001874288.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651840|gb|EDR16080.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1307
Score = 370 bits (951), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 207/502 (41%), Positives = 290/502 (57%), Gaps = 47/502 (9%)
Query: 100 KTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159
K WIYP+N P RDYQF I K LF NTLVALPTGLGKT IA V+ NF+RWFP+GK+VF
Sbjct: 198 KHWIYPINKPKRDYQFNIVKHCLFENTLVALPTGLGKTFIAGAVMLNFYRWFPEGKVVFV 257
Query: 160 APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS 219
AP++PLV QQI ACH GIP +I++ G++ RA W+ KRVFF+TPQ L D+ +
Sbjct: 258 APTKPLVAQQIMACHETCGIPGGDSIELNGEVPKATRARHWREKRVFFMTPQTLINDLHT 317
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIID 279
C +V LV+DEAHRATG+YAY IR LM+ R+LALTATPG+ + +Q +ID
Sbjct: 318 EICDPLDVVLLVVDEAHRATGDYAYNQVIRFLMAKNPHFRVLALTATPGNNPEAVQLLID 377
Query: 280 NLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGL 339
L+IS +E R+E D+ Y+H + I+ ++ ++ + + + + Y L GL
Sbjct: 378 GLHISRIEIRDEESLDLKQYIHKKVIKEHIIKPNEDIEAVKELLCKTMNVYMKPLKDCGL 437
Query: 340 LQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEA----YFGALITLYHIRR---L 392
++ D +PV L P PQ+ E++ ++G L L + R
Sbjct: 438 MRPTD----NPVSLH-----------PFRPQMIAQELQQHQKRFYGNLSLLGTLARGMLY 482
Query: 393 LSSHGIRPAYEMLEEKLKQ------------GSFARFMSKNEDIRKVKLLMQQSISHG-A 439
L + IR YE LEE + S + + + + + V ++ S G +
Sbjct: 483 LLTGSIRMCYEWLEEASRNREDDEDADKGKKSSKGKSLRNDTNFQAVMRELETQRSRGFS 542
Query: 440 QSPKLSKMLEVLVDHFKT--KDP---------KHSRVIIFSNFRGSVRDIMNALATIGDL 488
PK+ K+ +LV HF T +DP +RV++FS RG+V DI+ L L
Sbjct: 543 THPKMEKLKSILVQHFGTFLEDPGAKAGISEQDQTRVMVFSTHRGAVDDIVEDLQKERPL 602
Query: 489 VKATEFIGQSSGK-ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
++A FIGQ + K +KG Q+ Q V+ KF+AG YNV+VAT IGEEGLDI E+D+ +C+
Sbjct: 603 IRAARFIGQGTDKQGNKGLVQREQLEVINKFKAGEYNVLVATCIGEEGLDIGEIDVTVCY 662
Query: 548 DANVSPLRMIQRMGRTGRKHDG 569
DA+ +P RM+QR GRTGRK G
Sbjct: 663 DADKAPTRMVQRFGRTGRKRSG 684
>gi|449545739|gb|EMD36709.1| hypothetical protein CERSUDRAFT_123790 [Ceriporiopsis subvermispora
B]
Length = 940
Score = 370 bits (951), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 198/508 (38%), Positives = 291/508 (57%), Gaps = 35/508 (6%)
Query: 95 DAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
D AA+ W+YP+N P RDYQF I K LF NTLV+LPTGLGKT IA VV+ NF+ WFP+G
Sbjct: 215 DLLAARRWLYPLNQPKRDYQFNIVKHCLFENTLVSLPTGLGKTFIAGVVMLNFYTWFPEG 274
Query: 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLE 214
K+VF AP++PLV QQI+ACH GIP ++TG+ S KR+ W KRVF++TPQ L
Sbjct: 275 KVVFVAPTKPLVAQQIDACHRTCGIPGSHAAELTGETSRIKRSGLWDEKRVFYMTPQTLM 334
Query: 215 KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTI 274
D+ S C +V LVIDEAH+ +G+Y Y +R +M+ R+LALTATPG + +
Sbjct: 335 SDLTSDNCDPGRIVLLVIDEAHKGSGDYTYAQVVRFMMAKNPHFRVLALTATPGGNPEAV 394
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL 334
Q I+D L+IS +E R+E + D+ SY+H + I+ +++ E +I + + V++P +L
Sbjct: 395 QAIVDALHISHVEIRDEKNMDLHSYMHTKHIQQHYIKLSDELNKIKDLLAAVMQPMIKQL 454
Query: 335 SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLS 394
+ G+L N + TL + + + P + + L L L
Sbjct: 455 QSNGILHNAEASTLHHLRCRTGMGELKMKRAPQY-------LSGFLSRLQPLARAMSYLP 507
Query: 395 SHG-------IRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQ--SISHGA--QSPK 443
G + Y L + + S + S + + + LM + S+ G PK
Sbjct: 508 MRGCVQFEASMEMCYTALHDIATEDSDPKKNSATQKEKAFQTLMSEVRSMKQGGFPLYPK 567
Query: 444 LSKMLEVLVDHFKT----KDPK-----------HSRVIIFSNFRGSVRDIMNALATIGDL 488
+ K+ E+LV HF KD + SR I+F +FR V +++ L+ L
Sbjct: 568 MEKLQELLVQHFAKEMLDKDERTPGQEAADSAAESRAIVFVSFRQCVDEVVELLSHHNPL 627
Query: 489 VKATEFIGQSSG-KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
++AT FIGQ + K KG +QK Q +++KF+ G +NV+V+ SIGEEGLDI EVDL++C+
Sbjct: 628 IRATRFIGQGTDTKGRKGHTQKEQLEIIKKFKTGEFNVLVSMSIGEEGLDIGEVDLIVCY 687
Query: 548 DANVSPLRMIQRMGRTGRKHDGRIPHIF 575
DA +P+RM+QR+GRTG K DG + H+
Sbjct: 688 DAQKTPIRMLQRVGRTGCKKDGYV-HVL 714
>gi|343426790|emb|CBQ70318.1| related to MPH1-Member of the DEAH family of helicases [Sporisorium
reilianum SRZ2]
Length = 1493
Score = 370 bits (949), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 214/530 (40%), Positives = 307/530 (57%), Gaps = 61/530 (11%)
Query: 93 QIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP 152
+ID EAAKTWIYP N+ RDYQ+ I + ALF+N L ALPTGLGKT IAAVVI NFFRW+P
Sbjct: 260 KIDLEAAKTWIYPTNMEKRDYQYNIVQKALFNNVLAALPTGLGKTFIAAVVILNFFRWYP 319
Query: 153 DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQV 212
DGKI+F APSRPLV QQ ACH I G+P + ID+TGQ + + R +W TKR+F++TPQ
Sbjct: 320 DGKILFLAPSRPLVDQQKTACHRICGLPWDCAIDLTGQKAGSIRGDYWLTKRIFYMTPQT 379
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQ 272
LE DI + C + +VC+V+DEAH+A G YAY I LM V R+LAL+ATPG
Sbjct: 380 LENDILNKRCDPRDVVCVVVDEAHKARGRYAYGNIIGLLMEVNPHFRVLALSATPGKDSD 439
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332
++Q ++D L+I+ +E R E DV Y+ ++ E++ V +G++ + + ++++
Sbjct: 440 SVQEVVDQLHINQIEIRTEEAIDVQRYMFRKREEIVHVTLGKDLNMVKDNWAKLMQTQMD 499
Query: 333 RLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392
L GL++N+D L P +N+ K R ++ + K G ++A L + +
Sbjct: 500 PLMKAGLIRNQDPVFLHPF-AVNAIQKDRSR--AHILRAK-GYLQANIKELAHMALSMQY 555
Query: 393 LSSHGIRPAYEMLEEK--------LKQGSFARFMSKN------EDIRKVKLLM--QQSIS 436
L + Y L+E+ K + + M N E IR+++LL + I
Sbjct: 556 LMEQSLTMFYNRLKERSVGYNAKGTKCSTTKQQMHANTNTTFAEIIRELELLQDSKGRIL 615
Query: 437 HGAQSPKLSKMLEVLVDHFKT---------------------KDPKH------------- 462
H PK+ K+ VL++HF + PK
Sbjct: 616 H----PKMLKLRNVLIEHFDSVQAGQVHNAEAYAESGHDVFGNTPKSGELANFASSSQAD 671
Query: 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKAS-KGQSQKVQQAVLEKFRAG 521
+RV++F ++R +I++ L G KATEF+GQS K+ KG SQK Q+ V+ F+AG
Sbjct: 672 TRVMVFCSYRECCDEIVSYLNDSG--FKATEFVGQSKSKSGKKGMSQKDQERVINDFKAG 729
Query: 522 GYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
YNV+VATSIGEEGLDI VDL +C++A +RM+QR+GRTGRK +G+I
Sbjct: 730 KYNVLVATSIGEEGLDIGSVDLTVCYEAVKDSIRMLQRIGRTGRKREGKI 779
>gi|119586187|gb|EAW65783.1| Fanconi anemia, complementation group M, isoform CRA_c [Homo
sapiens]
Length = 1979
Score = 370 bits (949), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 224/654 (34%), Positives = 332/654 (50%), Gaps = 67/654 (10%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG + R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQV 258
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ +Y H RK+E + V +G+E I +++ + L
Sbjct: 259 ITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQR 318
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G
Sbjct: 319 NVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMG 378
Query: 398 IRPAYEMLEEKLKQGSFARFMSK-----NEDIRKVKLLMQ--------------QSISHG 438
+R Y L + G+ SK NED K+ ++ +I G
Sbjct: 379 MRSLYFFL-CGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFARTRSTSANGISAIQQG 437
Query: 439 AQS-------PKLSKMLEVLVDHFKT--------KDPKHSRVIIFSNFRGSVRDIMNALA 483
++ PKL K+ EV+++HFK+ K +RV+IFS+FR SV++I L+
Sbjct: 438 DKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLS 497
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++ F+G +SGK++KG +QK Q + + ++ ++ A S + L +
Sbjct: 498 QHQPIIRVMTFVGHASGKSTKGFTQKEQLEIYNQSQSNKRSIYKAISSNRQVLHFYQRSP 557
Query: 544 VICFDA----------------NVSPLRMIQRMGRTGRKHDGRIPHIFKPE--VQFVELS 585
+ D P R +QR DG K + + E
Sbjct: 558 RMVPDGINPKLHKMFITHGVYEPEKPSRNLQRKSSIFSYRDGMRQSSLKKDWFLSEEEFK 617
Query: 586 IEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKY----FHPTSDSTWRPSLIAFPHF 641
+ + R + + IT P + E + A+ H S S WR +
Sbjct: 618 LWNRLYRLRDSDEIKEITLPQVQFSSLQNEENKPAQESTTGIHQLSLSEWRL-------W 670
Query: 642 QALPSRVHKVMHSFRTGMLIDMMQHLQGLTFSRDDRTFVEDEVSSDKHLGLQTV 695
Q P H+V HS R I +MQ ++G+ + ++ E+ + +L ++ V
Sbjct: 671 QDHPLPTHQVDHSDRCRHFIGLMQMIEGMRHEEGECSY---ELEVESYLQMEDV 721
>gi|328698487|ref|XP_001948012.2| PREDICTED: hypothetical protein LOC100166297 [Acyrthosiphon pisum]
Length = 2033
Score = 369 bits (947), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 193/475 (40%), Positives = 286/475 (60%), Gaps = 12/475 (2%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
++YP N PVR+YQ I KTALF NTLV+LPTG+GKT IAAVV+YNF+RW+P GKI+F AP
Sbjct: 167 YVYPSNFPVREYQMGIIKTALFHNTLVSLPTGMGKTFIAAVVMYNFYRWYPMGKIIFMAP 226
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
+RPLV QQIEACH+I+GIP+E T +MTG I P +R W RVFF+TPQVL D+
Sbjct: 227 TRPLVAQQIEACHSIMGIPREMTFEMTGNIPPEQRYLAWNKYRVFFLTPQVLANDLSLNK 286
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
C C+++DEAHRAT +YAY ++ L +RI+ L+ATPG+ + + +I NL
Sbjct: 287 CPSDTFRCIIVDEAHRATKDYAYVQVLKRLSEENKVIRIVGLSATPGTNVEAVTEVIRNL 346
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
IS LE+R + DV+ Y + + +E I V++ ++I + + Y RL L
Sbjct: 347 NISKLEFRTDESPDVAKYTNKKDVECISVKLTNTILDIRTQFLMIYDKYLKRLKQYHAL- 405
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPP-NLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRP 400
N + L+ + ++ KF + ++P+ G + F ++L + LL+ +G++
Sbjct: 406 NGNVANLTKFQIFTAKQKFLTSNNARDMPKSLIGCLINDFTICMSLAYALELLTIYGVKV 465
Query: 401 AY----EMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFK 456
Y EM E + A F + I K + SH PKL ++ +++ ++F
Sbjct: 466 FYLQSLEMKETHKCLSNDADFQNLLHGINKELNSQDLTWSH----PKLFELKKIVQNYFG 521
Query: 457 TKDPK-HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVL 515
K+ + S++IIF +R V ++ L T G VK F+GQS K G QK Q V+
Sbjct: 522 FKNVEASSKIIIFCQYRLVVVEVFELLKTFGSSVKPVMFVGQSL-KEKGGLRQKEQLEVM 580
Query: 516 EKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
+F++G +NV++ATS+ EEGLDI +VDL+IC +AN SP++ +QR+GRTGRK G+
Sbjct: 581 SRFKSGDFNVLIATSVAEEGLDIGDVDLIICLEANKSPIKFVQRLGRTGRKRSGK 635
>gi|91085743|ref|XP_973670.1| PREDICTED: similar to CG7922 CG7922-PA [Tribolium castaneum]
Length = 1401
Score = 369 bits (947), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 201/524 (38%), Positives = 299/524 (57%), Gaps = 46/524 (8%)
Query: 75 GTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGL 134
T+ N+ S + D +A +TWIYP N+P+R+YQ+ IT+ AL NTLV+LPTGL
Sbjct: 7 NTQGINDAGSLCQDPATRGFDLQAGQTWIYPTNLPIREYQYTITEKALHWNTLVSLPTGL 66
Query: 135 GKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPT 194
GKT IAAVV+YNF+RW+P K++F AP+RPLV QQ++AC+NI+ IPQE T ++TG
Sbjct: 67 GKTFIAAVVMYNFYRWYPHDKVIFMAPTRPLVKQQMDACYNIMAIPQEVTAELTGTKIQQ 126
Query: 195 KRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV 254
R W+ KRVFF+TPQVL+ D+ L + CLV DEAHRA GN+AYC +R+L+
Sbjct: 127 SRTEIWQNKRVFFITPQVLQNDLNIIVELGPKIKCLVFDEAHRAKGNHAYCEVVRKLLPE 186
Query: 255 PVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQ 314
R+LAL+ATPG+ + + ++ NL I+ LE+R+E DV YV R +E + V +G+
Sbjct: 187 NKLFRVLALSATPGNSSKDVLDVMRNLLIAHLEFRSEESPDVKPYVFERALETVVVPLGE 246
Query: 315 EAVEINNRIWEVIRPYTSRL--------SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP 366
+ +I ++ +V+ YT L + L + + + + NS ++
Sbjct: 247 KLQQIRDKYIQVLEKYTRTLIQYKVIYGNCANLTKGKIFMVMKEFQAKNSANR------- 299
Query: 367 NLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEK----LKQGSFARFMSKNE 422
+ E+ +TLYH L G+R +E L QG+ + + +
Sbjct: 300 ---TANYAEIMKCLNICVTLYHAYETLVRCGLRAFLNFYKEHINNPLLQGNVS-IIQIMD 355
Query: 423 DIR-------KVKLL-------MQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIF 468
D++ +V+ L + SI G PK ++ ++LV HF D +RVI+F
Sbjct: 356 DLQAYLGPDPEVQPLPDGTFAEIPASIKFG--HPKFYQLRDILVAHFTNSDA-STRVIVF 412
Query: 469 SNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVA 528
+R S + L L+++ F+GQ + G +QK Q ++ FR G N +++
Sbjct: 413 FEYRESATEAYALLTRSFPLIRSRVFVGQRA-----GVTQKEQINTVKSFREGTCNTLLS 467
Query: 529 TSIGEEGLDIMEVDLVICFD-ANVSPLRMIQRMGRTGRKHDGRI 571
T IGEEGLD+ EVDL++CFD AN SP+RMIQRMGRTGRK +GR+
Sbjct: 468 TCIGEEGLDVGEVDLIVCFDIANKSPIRMIQRMGRTGRKKEGRV 511
>gi|258566071|ref|XP_002583780.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907481|gb|EEP81882.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 1083
Score = 369 bits (946), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 224/586 (38%), Positives = 321/586 (54%), Gaps = 42/586 (7%)
Query: 15 DDEFDWE---AAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLGP 71
DD FD+E A + SS+P S NL N ++ +Q+TL F N
Sbjct: 213 DDAFDFEPEYAKPTGNGSILISSQPRPSQ----NLSRSQN---TSFRQTTLLGGFANSSN 265
Query: 72 KPQGTEEFNEG--SSFDESLCHVQIDAEAAKTWIYPVNVPV-RDYQFAITKTALFSNTLV 128
K ++ E H ++ A + WI+P N+ R+YQF I ALF N LV
Sbjct: 266 KSSSQPAVRSWPLANRSEPPTHHLLNNHALRRWIFPGNLGSKREYQFNIAHRALFHNLLV 325
Query: 129 ALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMT 188
ALPTGLGKT IAA V+ N+F W D +IVF AP++PLV QQ++AC +IVGIP+ T +T
Sbjct: 326 ALPTGLGKTFIAATVMLNWFNWTKDAQIVFVAPTKPLVSQQVDACFHIVGIPRSKTTLLT 385
Query: 189 GQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAI 248
G +P RA W++KRVFF+TPQ + D+++G K +V LV+DEAHRATG YAY +
Sbjct: 386 GNTAPGIRAEEWQSKRVFFMTPQTIMNDLKTGIADPKRIVLLVVDEAHRATGAYAYVEIV 445
Query: 249 RELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELI 308
+ L R+LALTATPG+ + +Q +ID L IS +E R E+ D+ ++H R ++ I
Sbjct: 446 KFLQRFNNSFRVLALTATPGATVEAVQEVIDGLSISRIEIRTENSLDIREFIHKRNVDTI 505
Query: 309 EVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKF------RQ 362
+ +E + ++P +L RD L+P L +R ++ R
Sbjct: 506 TFDNSREMETAMELFAKALQPAVDKLRNQNAYWGRDPIALTPFGLTKARQEWNASAGGRA 565
Query: 363 APPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYE--------MLEEKLKQGSF 414
A P +K G + + F L +L H LL HGI P + +L+EK K G
Sbjct: 566 ASWP----VK-GMINSIFTVLASLAHAIDLLKYHGIGPFFRSLVSFEDSVLKEK-KGGKC 619
Query: 415 ARFMSKNEDIRKV--KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPK-------HSRV 465
A + + + + + KL + S PK+ + + +++HF K +RV
Sbjct: 620 ASQIVSDGNFKTLMRKLRVWTSSEDFIGHPKMEYLKQAILNHFLDVGSKINESAESDTRV 679
Query: 466 IIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNV 525
+IFS+FR S +I+ L +++ F+GQ++ K S+G QK Q V+ KF+ G YN
Sbjct: 680 MIFSHFRDSAEEIVRVLKKHQPMIRPHVFVGQANAKGSEGMDQKTQLDVVSKFKTGTYNT 739
Query: 526 IVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
IVATSIGEEGLDI EVDL+IC+D + SP+RM+QRMGRTGRK G I
Sbjct: 740 IVATSIGEEGLDIGEVDLIICYDGHSSPIRMLQRMGRTGRKRAGNI 785
>gi|403178013|ref|XP_003336442.2| hypothetical protein PGTG_17854 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173301|gb|EFP92023.2| hypothetical protein PGTG_17854 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1464
Score = 369 bits (946), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 202/492 (41%), Positives = 293/492 (59%), Gaps = 28/492 (5%)
Query: 92 VQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF 151
+Q D+EA KTWIY +N P R YQ+ I AL++N LV+LPTGLGKT IAAVV+ NF+RW+
Sbjct: 247 LQSDSEAIKTWIYSINKPKRKYQYDIVARALYNNCLVSLPTGLGKTFIAAVVMLNFYRWY 306
Query: 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQ 211
P GK++F AP+RPLV QQIEACH+I GIP + +TG S TKRA W+ KRV F TPQ
Sbjct: 307 PRGKVIFLAPTRPLVQQQIEACHSIAGIPSVDCVSLTGTTSATKRAVAWENKRVIFATPQ 366
Query: 212 VLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQ 271
+ D++ G+ + ++CLV+DEAHRATG YAYC ++ LM R+LALTATPGS
Sbjct: 367 TVANDLRRGSLRPEDIICLVVDEAHRATGAYAYCIVVKLLMRFNPHFRVLALTATPGSDP 426
Query: 272 QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYT 331
+ +Q +IDNL+I +E R E D+ Y N++I L ++ + E I ++ +++ P
Sbjct: 427 ERVQAVIDNLHIGHIEVRTEESMDIVPYTKNKEIVLEKIPLTPELTSIRDKWGKLMLPLI 486
Query: 332 SRLSAI--GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHI 389
+ A+ G + S K + PNL A + T +
Sbjct: 487 KQCGALFHGSKEPAYIHAFSITSAQMHIPKEKSYLRPNL---------AVLSKMATA--M 535
Query: 390 RRLLSSHGIRPAYEMLEE-KLKQGSFARFMSKNEDIR----KVKLLMQQS--ISHGAQSP 442
+LL + I AYE ++E K + G A + + +++ L Q + H P
Sbjct: 536 AKLL-EYSITLAYEKMQELKEESGKCAAGVCSQVGYKSLMTEIRDLTQSPDFVPH----P 590
Query: 443 KLSKMLEVLVDHF--KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG 500
K+ KM + ++ F K SRV+IF +FR V DI+N L ++KA+ F+GQS+
Sbjct: 591 KMEKMKALTLEFFINAQDQGKSSRVMIFCHFRDMVTDIVNYLNQEKPIIKASAFVGQSND 650
Query: 501 -KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQR 559
+ ++G +QK Q +++F+ +NV+VATSIGEEGLDI +D +IC++A SPLRM+QR
Sbjct: 651 VRGNRGMNQKTQNETIQRFKNNEFNVLVATSIGEEGLDIGALDFIICYEAQKSPLRMLQR 710
Query: 560 MGRTGRKHDGRI 571
+GRTGR DG++
Sbjct: 711 LGRTGRNEDGKV 722
>gi|449299067|gb|EMC95081.1| hypothetical protein BAUCODRAFT_72607, partial [Baudoinia
compniacensis UAMH 10762]
Length = 774
Score = 368 bits (945), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 204/511 (39%), Positives = 296/511 (57%), Gaps = 30/511 (5%)
Query: 86 DESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI 144
+E+ H ++DA+A +TW+YP N+ +RDYQ+ I +LF NTLVALPTGLGKT IAA V+
Sbjct: 83 EEAPTHHKLDAKAMETWVYPTNLGTIRDYQYNIVNRSLFHNTLVALPTGLGKTFIAATVM 142
Query: 145 YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204
N++RW P ++VF AP++PL+ QQ++AC+ IVGIP+ T+ MTG+ +P RA W KR
Sbjct: 143 LNYYRWTPTSQLVFMAPTKPLIAQQLDACYRIVGIPRCDTVLMTGETTPAVRAEQWLEKR 202
Query: 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264
VFF+TPQ + D++SG K +V +V+DEAH+ATG YAY I L R+LALT
Sbjct: 203 VFFMTPQTVINDLKSGISDPKKIVLVVVDEAHKATGGYAYTEVIAFLRRFNSSFRVLALT 262
Query: 265 ATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
ATPGSK + +Q +ID+L I+ E R E D+ Y H + + + E I +
Sbjct: 263 ATPGSKVEAVQAVIDHLGIARTELRTEQSLDIRPYTHEKHTDFELFDYSDEQELIMEHMT 322
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSR------DKFRQAPPPNLPQIKFGEVEA 378
+ + P +L++ +RD L+ L +R D R+AP P +K G +
Sbjct: 323 KALNPVLQKLNSQNAFWSRDPMQLTAFGLTKARTQWMQSDAGRRAPMP----LK-GMINI 377
Query: 379 YFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKN--EDIRKVKLLMQQSIS 436
F L L H LL HGI P Y + E K + KN E ++ + S
Sbjct: 378 IFTLLSQLAHGIGLLKYHGIVPFYTGMLEFQKAVDSGQSKGKNAREIVQSSDFIQMMSRI 437
Query: 437 HG-------AQSPKLSKMLEVLVDHF---------KTKDPKHSRVIIFSNFRGSVRDIMN 480
G PKL + EV++ HF P +RV++F++FR S +I
Sbjct: 438 RGWTHNPDFVGHPKLQYLREVVLGHFLDAGEGALGTDAPPSATRVMVFASFRDSCEEICR 497
Query: 481 ALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIME 540
L L++ F+GQ+ S+G +Q+ Q AV++ F+AG +N +VATSIGEEGLDI +
Sbjct: 498 VLKRNDPLIRPHVFVGQAGSANSEGMTQQKQNAVVQDFKAGKFNTLVATSIGEEGLDIGD 557
Query: 541 VDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
VDL++C+DA+ SP+RM+QR+GRTGRK G++
Sbjct: 558 VDLIVCYDASSSPIRMLQRIGRTGRKRIGKV 588
>gi|328853782|gb|EGG02918.1| hypothetical protein MELLADRAFT_38323 [Melampsora larici-populina
98AG31]
Length = 554
Score = 367 bits (943), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 200/500 (40%), Positives = 297/500 (59%), Gaps = 34/500 (6%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H+ D+E KTWIY +N P R YQ+ I ALF+N LV+LPTGLGKT IAAVV+ NF+RW
Sbjct: 5 HLSCDSEEIKTWIYSINKPKRKYQYDIVAKALFNNCLVSLPTGLGKTFIAAVVMLNFYRW 64
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
+P GKI+F AP++PLV QQIEACH+I GIP + +TG ++P KRA W KRV F TP
Sbjct: 65 YPQGKILFLAPTKPLVQQQIEACHSIAGIPSRDCLTLTGSVAPAKRAKVWDHKRVIFSTP 124
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
Q + D+ G + ++C+V+DEAHRATG YAYC I+ LM R+LALTATPGS
Sbjct: 125 QTVMNDLTKGLLKPQDVICVVVDEAHRATGAYAYCVVIKSLMRFNPHFRVLALTATPGSD 184
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+ +Q +IDNL+I +E R E D+ Y +++I L + + E I ++ +++P+
Sbjct: 185 PERVQEVIDNLHIGHIEVRTEESMDIKPYTKHKEIVLEVIAVTPELASIRDKWATLMQPF 244
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR 390
+ A+ ++D + P + ++ ++ LP+ + G + L + ++
Sbjct: 245 IKQCDAL-FRGSKDPTLIHPYSVTSAVNQ--------LPKER-GYLRPNLSLLGKMAYVM 294
Query: 391 RLLSSHGIRPAYEMLEE------KLKQG--SFARFMSKNEDIRKVKLLMQQSISHGAQSP 442
L + I A+E + E K +G S + S DI ++ + P
Sbjct: 295 AKLLEYSIPIAHEKMAELKHEPSKAAKGLCSLVGYKSLLYDIEEM-----MRFPTFSPHP 349
Query: 443 KLSKMLEVLVDHF---------KTKDPKH-SRVIIFSNFRGSVRDIMNALATIGDLVKAT 492
K+ KM ++++ F + KD + SR+++F NFR V DI++ L L+KA+
Sbjct: 350 KMDKMKALIIEFFIGVSERQKGQNKDKQGTSRLMVFCNFRDVVTDIVDYLNMEQPLIKAS 409
Query: 493 EFIGQSSG-KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
FIGQ + K ++G +QK Q V+ KF+A +NV+VATSIGEEGLDI +D +IC++A
Sbjct: 410 AFIGQGTDTKGNRGMTQKQQAEVIRKFKADEFNVLVATSIGEEGLDIGALDCIICYEAQK 469
Query: 552 SPLRMIQRMGRTGRKHDGRI 571
SPLRM+QR+GRTGR DG++
Sbjct: 470 SPLRMLQRLGRTGRNEDGKV 489
>gi|256086569|ref|XP_002579470.1| hypothetical protein [Schistosoma mansoni]
gi|353229673|emb|CCD75844.1| hypothetical protein Smp_083710 [Schistosoma mansoni]
Length = 1357
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 200/541 (36%), Positives = 295/541 (54%), Gaps = 63/541 (11%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D +A WIYP + +R YQ I + L+ NTLV LPTGLGKT +AAVVIYNFFRW+P
Sbjct: 98 FDVDAGAEWIYPSDSSIRKYQLNIIEQCLYKNTLVCLPTGLGKTFVAAVVIYNFFRWYPT 157
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
G+ VF AP+RPLV QQ+ +C +G +E ++TG I+ KR + W T +V F+TPQVL
Sbjct: 158 GRFVFMAPTRPLVTQQLTSCSEFIGPLKENIAEVTGSIAQNKRKTIWSTYQVLFLTPQVL 217
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP---VQLRILALTATPGSK 270
D+Q+G C + L+ DEAH+ATGN+AYC +R L + P Q RI+AL+ATP +
Sbjct: 218 MNDLQTGVCPANSIRLLIFDEAHKATGNHAYCQVLRILTNPPHTHRQFRIVALSATPAAD 277
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+ +Q +I NL IS LE R ++ DV Y +R++E + V +G E N++ E IR
Sbjct: 278 IEGVQTLIANLLISHLELRTDTSADVRPYTQHRELEAVVVPLGPELTRYRNQLIECIRMP 337
Query: 331 TSRLSAIGLLQ---NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY 387
RL G L + + L+ ++ +R+K+ P++ + ++ F +I L
Sbjct: 338 LDRLYQRGALSECYDLRPEKLAKYTIIKAREKWSSQTFPSINSTENSSIQCDFALVICLL 397
Query: 388 HIRRLLSSHGIRPAYEMLE--------EKLKQGSFARFMSKNE-----------DIRKVK 428
H LL HG+RP Y LE L + + + N ++
Sbjct: 398 HGLELLVQHGLRPLYRYLEGVYSGNRASSLVRSQLNKLPNMNHLWTELAQRFGMNVECTD 457
Query: 429 LLMQQSISHG----------AQSPKLSKMLEVLVDHFKTKDPKH------SRVIIFSNFR 472
+Q + H A PKL K+ ++L+ HF +D K+ +R I+F+ FR
Sbjct: 458 GTWKQELIHADLLHSQAPFLAGHPKLDKLRDILLGHFNFEDRKNTHEQSSTRAIVFTQFR 517
Query: 473 GSVRDIMNALATIGDLVKATEFIGQSS----------------------GKASKGQSQKV 510
SV +IM+ L + L++ FIGQ + A G SQ+
Sbjct: 518 DSVEEIMHMLKPLKPLIRPASFIGQGTRVNGSPQLTNQYESPNLKNSRLSNAHSGISQRD 577
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
Q V++ FR+G YN +V+T IGEEG+D+ +VDL++CFDA+ SP++++QR GRTGRK GR
Sbjct: 578 QIRVMDGFRSGVYNTLVSTCIGEEGIDVGQVDLIVCFDASKSPIQLMQRQGRTGRKRLGR 637
Query: 571 I 571
I
Sbjct: 638 I 638
>gi|281202162|gb|EFA76367.1| hypothetical protein PPL_10132 [Polysphondylium pallidum PN500]
Length = 1441
Score = 367 bits (941), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 196/493 (39%), Positives = 286/493 (58%), Gaps = 42/493 (8%)
Query: 95 DAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
D +A KT IYP N+ +RDYQ+ I A++ NTLV LPTGLGKT IA+VV+ NF+RWFP
Sbjct: 262 DDDAMKTLIYPANMTIRDYQYNIVINAIYKNTLVCLPTGLGKTFIASVVMLNFYRWFPKS 321
Query: 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLE 214
KI+F SRPLV QQ+ A H+I G+ +I +TG + P R W+ KRVFF+TPQ+L+
Sbjct: 322 KIIFMVHSRPLVTQQMSAFHSITGVKLSDSIQLTGNVKPEARTKLWQDKRVFFITPQILD 381
Query: 215 KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTI 274
KDI++G C + +V+DEAH+ATG++AYCT+I + RILALTA+PGSK+ +
Sbjct: 382 KDIEAGRCDPSNISLVVVDEAHKATGDFAYCTSIHLIAKYTRYFRILALTASPGSKRDAV 441
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIR-PYTSR 333
Q ++ NL IS ++ R E+ D++ YVH + IE+I V + +E ++ + +V R Y +
Sbjct: 442 QKVLSNLLISNMDIRTENSLDIAPYVHKKSIEVIVVPISEEVNQLLQLLEKVQRIIYNNI 501
Query: 334 LSAIGLLQNR--DYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRR 391
S I N + + L +S + F V F L L +
Sbjct: 502 QSYIKKPLNECIPSYAIKQMQLYHSMNNFN--------------VGYNFQVLSYLLNAST 547
Query: 392 LLSSHGIRPAYEML-------------EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHG 438
L HG+ ++L +E L+ +A ++ M I+H
Sbjct: 548 TLVKHGMSRFLDVLNQIKTPKKMTKPVKEVLQSMQWANLLTH-------VTAMDGKIAHN 600
Query: 439 AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQS 498
K++K+ EV++DHFK +RV+IF +F+ +V++I++ L + L+K EF GQS
Sbjct: 601 ----KMAKLGEVVIDHFKNSKETSTRVMIFVDFKSAVKEIVDNLGKLSSLIKVMEFYGQS 656
Query: 499 SGKA-SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
K +KG Q Q ++L +FR+G YN +V T IGEEGLD EVDL++CFD S +R I
Sbjct: 657 DSKGKAKGLKQSEQASILTRFRSGSYNTLVTTCIGEEGLDFGEVDLIVCFDTPQSTVRNI 716
Query: 558 QRMGRTGRKHDGR 570
QRMGRTGRK +G+
Sbjct: 717 QRMGRTGRKRNGK 729
>gi|219123462|ref|XP_002182043.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406644|gb|EEC46583.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1565
Score = 366 bits (940), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 210/566 (37%), Positives = 315/566 (55%), Gaps = 42/566 (7%)
Query: 92 VQIDAEAAKTWIYPV--NVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR 149
V ID A W+YP P R YQ ITKTALF NTLV+LPTGLGKTLIAA V+YN++R
Sbjct: 261 VPIDESTAHEWVYPTAETFPKRQYQLEITKTALFHNTLVSLPTGLGKTLIAAAVLYNYYR 320
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
WFP GK++F AP+ PLV QQ++AC++I+GIP T +TG++ +R W+ +RVFF T
Sbjct: 321 WFPTGKVIFLAPTLPLVNQQVKACYDIMGIPPSDTAVLTGKVHAARREIVWRDRRVFFCT 380
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQ ++KD+ + C +VC+V+DEAH++TG+YAY + L R+L L+ATPG+
Sbjct: 381 PQTVQKDLDANRCDSSKVVCVVLDEAHKSTGDYAYVKVVERLEEAGAHFRVLGLSATPGT 440
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
+ IQ ++D L I+ +E R +SD V+ Y+H ++ E++ V+ + I + +V+ P
Sbjct: 441 NIKAIQSVVDVLRINKIEARRDSDPSVARYIHEKQSEIVVVKQASASRTIERALNDVVGP 500
Query: 330 YTSRLSAIGLLQN-RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYH 388
RL + G L T++ +L+ +R++F + + +F A
Sbjct: 501 LLERLRSAGALGRLTGNATITAYNLIRAREEF-------CKRRNDDGLIGFFLAAQQFVQ 553
Query: 389 IRRLLSSHG---IRPAYEMLEEKLKQGSFA------RFMSKNEDIRKVKLLMQQSISHG- 438
IR L HG +R L + ++G A F + E++ K + +H
Sbjct: 554 IRSDLHKHGVGLVRSKLSRLRTERQRGMVASIVKGKEFQALWEEV--AKSTCDPNSNHNN 611
Query: 439 -----AQSPKLSKMLEVLVDHFKTKDP--KHSRVIIFSNFRGSVRDIMNALATIGDLVKA 491
+PKL+++ E+LV+HF+ SR I+FS FR SV +I++ L+ L++
Sbjct: 612 VQDKLVNNPKLTQLREILVEHFERARACSTSSRAIVFSQFRDSVSEIVDILSASRPLIRP 671
Query: 492 TEFIGQSSGKAS------KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
F+GQ G KG Q QQ + +FR +NV+V T IGEEGLDI EVDL++
Sbjct: 672 RHFVGQGKGTKGEGGIQLKGMRQVEQQQAIREFREDTFNVLVCTCIGEEGLDIGEVDLIV 731
Query: 546 CFDANVSPLRMIQRMGRTGRKHDGRIPHIFK--PEVQFVELSIEQYVSRGKKVKDDH--- 600
FD SP+RMIQR GRTGRK DGR+ + PE + + S + + +K+
Sbjct: 732 NFDTLRSPIRMIQRTGRTGRKRDGRVVCLVAEGPEERTLLASRQSERNLAHALKNPKSFR 791
Query: 601 -AITTPIFKEKLTAAETD-LIAKYFH 624
A T P+F + E + L++K FH
Sbjct: 792 VAQTMPLFPSQPKLREQNMLVSKDFH 817
>gi|156548982|ref|XP_001607217.1| PREDICTED: hypothetical protein LOC100123563 [Nasonia vitripennis]
Length = 1498
Score = 366 bits (939), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 201/497 (40%), Positives = 285/497 (57%), Gaps = 30/497 (6%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D + WIYP N P RDYQF+I +TAL++NTLV LPTGLGKT IAAVV+YNF+RW+P
Sbjct: 24 FDLSSGSKWIYPENYPRRDYQFSIVQTALYNNTLVCLPTGLGKTFIAAVVMYNFWRWYPR 83
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
G++VF AP++PLV QQIEACH I+GIP E T+++TG I+ KR W KRV F TPQ
Sbjct: 84 GRVVFLAPTKPLVAQQIEACHEIMGIPSEETVELTGAINQVKRKQAWIQKRVVFATPQTF 143
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
+KD+Q+ + + C+VIDEAH+A G ++YC +R + RILAL+ATPGSK
Sbjct: 144 QKDLQNDIVPCQLIKCIVIDEAHKALGKHSYCEIVRMMSDKTKFFRILALSATPGSKIDH 203
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
++ +I NL IS LE R++S D++ Y ++R +E I V +G + +R ++ P+
Sbjct: 204 VREVIQNLLISELELRDDSSPDITPYTNDRSMEKIIVGLGTDLTNYKDRYVNIMDPHVRI 263
Query: 334 LSAIGLLQ-NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392
L +LQ N + + +L + + R N G + L+T+YH L
Sbjct: 264 LVKNKILQTNTANISKGRIFMLLKQCESRPQKSNN-----HGIIMKTLNILLTMYHAYEL 318
Query: 393 LSSHGIRPAYEML---EEKLKQGSFARFMSKNEDIRKV--KLLMQQSISHGA-------- 439
L HG+R Y +K S EDI++ + + + G
Sbjct: 319 LVKHGLRAFYNFYITHSDKFWLDSELDLQLLLEDIKRYIGEFPVIHPLPDGTIPDIPSDL 378
Query: 440 --QSPKLSKMLEVLVDHFKT--KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFI 495
K K+ E+L DHF++ K +R I+F +R V ++ L L++ F+
Sbjct: 379 KFGHNKFDKLRELLTDHFRSFAAQNKSTRAIVFVEYRDIVNEVYVLLLQTRPLIRPQMFV 438
Query: 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS-PL 554
GQ+ GQ QK Q A LE FR NV+++TS+GEEGLD+ EVDL+ICFD + S P
Sbjct: 439 GQA------GQKQKEQLAALEDFRNDKVNVLISTSVGEEGLDVGEVDLIICFDISSSTPT 492
Query: 555 RMIQRMGRTGRKHDGRI 571
R++QRMGRTGRK GR+
Sbjct: 493 RLVQRMGRTGRKRSGRV 509
>gi|242804208|ref|XP_002484328.1| DEAD box helicase Mph1, putative [Talaromyces stipitatus ATCC
10500]
gi|218717673|gb|EED17094.1| DEAD box helicase Mph1, putative [Talaromyces stipitatus ATCC
10500]
Length = 1101
Score = 365 bits (938), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 214/561 (38%), Positives = 301/561 (53%), Gaps = 56/561 (9%)
Query: 29 TACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLGPKPQGTEEFNEGSSFDES 88
T S++P S TN + P + ST + N+ P P+ DE
Sbjct: 229 TTSTSTRPIQSQRTNLR---QTTLFPLATRDST--QGIRNVSPPPR-----------DEP 272
Query: 89 LCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF 148
H ++D TW LF N LVALPTGLGKT IAA V+ N+F
Sbjct: 273 PTHHKLDQHELNTW------------------GLFHNLLVALPTGLGKTFIAATVMLNWF 314
Query: 149 RWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFV 208
RW D +IVF AP++PLV QQ+ AC I GIP+ T +TG I P RA W+TKRVFF+
Sbjct: 315 RWTKDAQIVFTAPTKPLVSQQVTACLGIAGIPRSHTTLLTGNIPPGTRAEEWQTKRVFFM 374
Query: 209 TPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPG 268
TPQ L D+++G K +V LV+DEAHRATG YAY ++ L R+LALTATPG
Sbjct: 375 TPQTLINDLKTGIADPKRIVLLVVDEAHRATGGYAYVEVVKFLRRFNQSFRVLALTATPG 434
Query: 269 SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIR 328
S + +Q +ID L IS +E R E D+ YVH R +++ +E + + E ++
Sbjct: 435 STVEAVQAVIDGLDISRVEIRTEQSLDIREYVHARNVDVQTFTNSEEMTLCMDLMTEALQ 494
Query: 329 PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKF-GEVEAYFGALITLY 387
P +L + RD L+ L +R ++ + G+V A F L +L
Sbjct: 495 PCVDQLRNMNAYWGRDPMMLTAYGLTKARQQWMASDAGRNANFGVKGKVNALFTVLASLA 554
Query: 388 HIRRLLSSHGIRPAYEML------EEKLKQGSFARFMSKNEDIRKVKLLMQ------QSI 435
H LL HGI P Y L + K G R + ++++ +K+ +Q + I
Sbjct: 555 HSIDLLKYHGIVPFYNHLVSFKSNTDGQKGGKHQRAIVQDDNFKKLMDRLQPWCRDPEFI 614
Query: 436 SHGAQSPKLSKMLEVLVDHF-----KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK 490
H PKL + E++++HF T ++R++IF++FR S +I L +++
Sbjct: 615 GH----PKLGYLREIVLNHFMDAGEGTNGTSNTRLMIFAHFRDSAEEITRVLRRHEPIIR 670
Query: 491 ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
F+GQ+S K S+G QK Q +V+EKF+ G YN IVATSIGEEGLDI EVDL++C+D++
Sbjct: 671 PHVFVGQASAKGSEGMDQKTQLSVIEKFKNGTYNTIVATSIGEEGLDIGEVDLIVCYDSS 730
Query: 551 VSPLRMIQRMGRTGRKHDGRI 571
SP+RM+QRMGRTGRK G I
Sbjct: 731 ASPIRMLQRMGRTGRKRAGNI 751
>gi|19114536|ref|NP_593624.1| ATP-dependent 3' to 5' DNA helicase (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74698622|sp|Q9HE09.1|MFH2_SCHPO RecName: Full=Putative ATP-dependent RNA helicase mfh2; AltName:
Full=FancM homolog protein 2
gi|12038920|emb|CAC19734.1| ATP-dependent 3' to 5' DNA helicase (predicted)
[Schizosaccharomyces pombe]
Length = 783
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 197/490 (40%), Positives = 294/490 (60%), Gaps = 18/490 (3%)
Query: 95 DAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
+ +A + WI+P R+YQ + ALF N L+ALPTGLGKT IAAVV+ N+FRWFP+
Sbjct: 96 NIDAMQNWIFPQTQQYRNYQKEFCEQALFHNLLLALPTGLGKTFIAAVVMLNYFRWFPES 155
Query: 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLE 214
KI+F AP++PL++QQ AC N+ G+ T ++ G++SP +R + TKRVFF+TPQ L+
Sbjct: 156 KIIFLAPTKPLLLQQRVACSNVAGMSPGATAELNGEVSPDRRLFEYNTKRVFFMTPQTLQ 215
Query: 215 KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTI 274
D++ K ++CL+ DEAHRATGN++Y +R ++ R+L LTATPGS ++
Sbjct: 216 NDLKEHLLDAKSIICLIFDEAHRATGNHSYAQVMRAVLRSNSHFRVLGLTATPGSSTASV 275
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL 334
Q ++D L+IS L RNE D+ SYV ++KI+LI+V + E + + + RPY + L
Sbjct: 276 QKVVDCLHISKLIVRNEESIDIRSYVFHKKIQLIKVTISSEMNILKSDFANLYRPYFNFL 335
Query: 335 SAIGLLQ-NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L+ N + + L S K+ N+ + ++ + F LI+ HI LL
Sbjct: 336 RQKKLIPINCECLNIKAYTLFVSLRKY-SFSSKNVQSKEKSKIMSCFTLLISCAHITYLL 394
Query: 394 SSHGIRPAYEMLEEKLKQG-------SFARFMSKNEDIRKVKL---LMQQSISHGAQSPK 443
HGI Y+ L E + SF F SK L + S++H PK
Sbjct: 395 DCHGIIQFYQKLVETKNKAEGKGSGQSFWLFTSKPFAFYLEHLHNKIQGLSLNH----PK 450
Query: 444 LSKMLEVLVDHFK--TKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGK 501
++ +LE+L +HFK ++ ++ RV+IF+ FR + I L I +V+A+ FIGQ++
Sbjct: 451 MNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIRPMVRASLFIGQANSA 510
Query: 502 ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMG 561
S G +Q Q+ +++FRAG N +VATSIGEEGLDI + D++IC+DA+ SP+R IQRMG
Sbjct: 511 YSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMG 570
Query: 562 RTGRKHDGRI 571
RTGRK G++
Sbjct: 571 RTGRKKSGKV 580
>gi|308806203|ref|XP_003080413.1| DEAD-box like helicase (ISS) [Ostreococcus tauri]
gi|116058873|emb|CAL54580.1| DEAD-box like helicase (ISS) [Ostreococcus tauri]
Length = 1307
Score = 363 bits (932), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 202/534 (37%), Positives = 301/534 (56%), Gaps = 41/534 (7%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
+D EA +T++YP + R+YQ+ IT+ AL +N+LV LPTGLGKTLIAAVV++N++RWFP
Sbjct: 165 MDPEAIQTYVYPAQIARREYQYEITRNALLTNSLVCLPTGLGKTLIAAVVMFNYYRWFPT 224
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK---RASFWKTKRVFFVTP 210
GKI+F AP+RPLV QQ+ ACH ++GIP+E T+ + G + R FW+ KRVFF TP
Sbjct: 225 GKIIFMAPTRPLVDQQMAACHGMLGIPREDTVVLMGTTKKDESGSRRDFWQQKRVFFCTP 284
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
+ D+++G +VC+V+DEAH A G YA +R L V+ R+LALTATPG
Sbjct: 285 HTVHNDLENGDLDANQVVCVVVDEAHHARGQYASAEVLRVLTEQKVRFRLLALTATPGQG 344
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+ +Q ++ L I +++R++ D DVS Y H R++ + +V+ Q + + + +++RPY
Sbjct: 345 LEEVQAVVKTLRIGRIDFRSDQDPDVSRYTHKREMIVEKVKPDQAMSHVQDMLCDLLRPY 404
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP-------------NLPQIKFGEVE 377
++L+++G L Y+ ++ + R PP N G
Sbjct: 405 CAKLASMGALGENSYRMQQFINNRATHGASRIEPPAWFTLHSARRDLSHNQNVRAKGSAY 464
Query: 378 AYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISH 437
A A + L LL G + AYE E + + ++ R+V L++ +
Sbjct: 465 AMLEAAMELSKAYDLLLKLGAKDAYEYCERRGAEKQSTLIHRTDQVSREVVDLLRSMSCN 524
Query: 438 GA-QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVK 490
GA SPKL ++ +L HFK + +RVIIF+++R SV+DI+ AL A +K
Sbjct: 525 GAHHSPKLDRLTSILKHHFK-ESTADTRVIIFTSYRTSVKDIVRALRDVPAGADTACKIK 583
Query: 491 ATEFIGQSS----------------GKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEE 534
EF+GQ + +KGQ+QK Q+ L FRAG N +VATSIGEE
Sbjct: 584 VAEFVGQGDTAAGKKRGGVGGAGGDDRGTKGQTQKEQKQTLVDFRAGTLNTLVATSIGEE 643
Query: 535 GLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQ 588
GLDI VDL++ FD V +R IQRMGRTGR DG++ + +F + + EQ
Sbjct: 644 GLDIPSVDLIVFFDV-VDIIRAIQRMGRTGRARDGKVVILATEGKEFSKYTSEQ 696
>gi|393218545|gb|EJD04033.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 1263
Score = 363 bits (931), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 196/508 (38%), Positives = 293/508 (57%), Gaps = 51/508 (10%)
Query: 99 AKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVF 158
AK W++P+N P RDYQF I K LF NTLVALPTGLGKT IA VV+ N++RWFPDGKIVF
Sbjct: 225 AKDWVFPLNRPRRDYQFNIAKKCLFQNTLVALPTGLGKTFIAGVVMLNYYRWFPDGKIVF 284
Query: 159 AAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
AP++PLV QQ+ ACH++ GIP +TG++ KR+ W KRV ++TPQ L D+
Sbjct: 285 VAPTKPLVAQQVTACHDVCGIPGSDAALLTGEVQKHKRSYAWAQKRVIYMTPQTLVNDLV 344
Query: 219 SGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHII 278
SG +V LVIDEAHR TG+YAY +R +M+ RILALTATPG+ + +Q I+
Sbjct: 345 SGLADPLDIVLLVIDEAHRGTGDYAYAQVVRYMMAKNPHFRILALTATPGNNPEAVQAIV 404
Query: 279 DNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIG 338
D+L+IS +E RNES D+ Y+ ++I++ ++MG+ + I + ++ P R G
Sbjct: 405 DSLHISHIEIRNESSFDLQRYIFKKEIQVRVIKMGESVLTIQRLLCKITDPLLDRARKAG 464
Query: 339 LLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS--- 395
++ R+ +L P + K L K + F L L + R + +
Sbjct: 465 IVYARNAMSLHPYSCVAGSQK--------LATSKSAKARWMFSYLRVLGSLARAMGNLME 516
Query: 396 HGIRPAYEM---LEEKLKQGSFARFMSKNEDIRKVKLL-------------MQQSISHGA 439
+ Y L+E LK G KN+D ++V LL QQ++ A
Sbjct: 517 SSVSVCYRSLKDLKENLKSG------EKNDD-KEVNLLRNPDFIKLMEECERQQALGF-A 568
Query: 440 QSPKLSKMLEVLVDHFKT--KDPK-------------HSRVIIFSNFRGSVRDIMNALAT 484
PK+ ++E+++DHF T +P+ ++V+IF R + ++++ L
Sbjct: 569 PHPKMKALVEIIMDHFNTPPSNPETPAPGESTEAASSSTKVMIFVGLREVIDEVVDVLDQ 628
Query: 485 IGDLVKATEFIGQS-SGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+++AT F+GQ K KG +Q Q ++KF+ G YN++V+TS+GEEGLDI E+D
Sbjct: 629 YKPMLRATRFVGQGIDKKGKKGLAQAKQLETIQKFKDGEYNILVSTSVGEEGLDIGEIDR 688
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRI 571
+IC+D++ S ++M+QR+GRTGRK G +
Sbjct: 689 IICYDSSKSSIQMLQRVGRTGRKRTGYV 716
>gi|393247997|gb|EJD55504.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 1053
Score = 362 bits (930), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 196/496 (39%), Positives = 293/496 (59%), Gaps = 25/496 (5%)
Query: 93 QIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP 152
Q+D A+ WI+P+N R YQF+I + AL NTLVALPTGLGKT IA+V++ N++RWFP
Sbjct: 4 QLDRLNARQWIFPLNRQKRSYQFSIVEAALLENTLVALPTGLGKTFIASVIMLNYWRWFP 63
Query: 153 DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQV 212
GKI+F P++PLV QQI ACH + GIP ++ G+IS KRA W+ KRVF++TPQ
Sbjct: 64 TGKIIFMCPTKPLVAQQITACHEVCGIPGTDAAELHGEISKDKRARLWEQKRVFYMTPQT 123
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQ 272
L+ D+QS ++ +V LV+DEAHRATG YAY TAIR + + RILALTATP S ++
Sbjct: 124 LDNDLQSENLDVRDIVLLVVDEAHRATGEYAYATAIRRITARNPHFRILALTATPSSDKE 183
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332
+Q IID L+IS +E R+E+ D+ Y+ ++ + ++M ++ + + +++ P
Sbjct: 184 KMQPIIDALHISHIEIRSEASPDILPYIKKKERKEYIIQMPPHLAKLRDGMAKIMLPILK 243
Query: 333 RLSAIGLLQNRDYQTLSPVDLLNSRDKFR---QAPPPNLPQIKFGEVEAYFGALITLYHI 389
+ + D + P L ++ D R Q+PPP + + A GA+
Sbjct: 244 QFKNGEIRGTLDPLYIRPFTLKSALDALRSSKQSPPPWV-YSNLANLHALSGAMGYFLE- 301
Query: 390 RRLLSSHGIRPAYEMLEEKLK------QGSFARFMSKNEDIRKVKLLMQQSISHGAQ-SP 442
+ + A E LE +L Q A ++ + +++ + HG P
Sbjct: 302 ------YSPKLALEHLEARLAEVDSNGQAKKAPNYTQTREYKQLIKDFKAEEEHGRLIHP 355
Query: 443 KLSKMLEVLVDHF----KTKDP--KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIG 496
KL K+ +L+D+F + DP K+S+ I+F +FR V +I+ L L+ A +FIG
Sbjct: 356 KLEKLRALLIDYFVQAMEGDDPERKNSKAIVFVSFRACVEEIVEYLKADAPLINAAKFIG 415
Query: 497 QSSG-KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
Q K KG +Q Q ++E+FR G +NV+++TSIGEEGLDI EVDL++C++ SP+R
Sbjct: 416 QGEDKKGGKGMAQSEQLELIERFRGGEFNVLISTSIGEEGLDIGEVDLIVCYETPSSPIR 475
Query: 556 MIQRMGRTGRKHDGRI 571
+QR GRTGRK DG+
Sbjct: 476 GLQRAGRTGRKRDGQF 491
>gi|71004784|ref|XP_757058.1| hypothetical protein UM00911.1 [Ustilago maydis 521]
gi|46096862|gb|EAK82095.1| hypothetical protein UM00911.1 [Ustilago maydis 521]
Length = 1490
Score = 362 bits (930), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 207/528 (39%), Positives = 297/528 (56%), Gaps = 57/528 (10%)
Query: 93 QIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP 152
+ID EAAKTWIYP N+ RDYQ+ I + ALF+N L ALPTGLGKT IAAVVI NFFRW+P
Sbjct: 264 KIDLEAAKTWIYPTNMERRDYQYNIVQKALFNNVLAALPTGLGKTFIAAVVILNFFRWYP 323
Query: 153 DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQV 212
DGKI+F AP+RPLV QQ ACH I G+P + ID+TG + ++R +W TKR+F++TPQ
Sbjct: 324 DGKILFLAPTRPLVDQQKTACHRICGLPWDCAIDLTGNTAGSRRGDYWATKRIFYMTPQT 383
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQ 272
E D++ C + +VC+VIDEAH+A G YAY I +M V R+LAL+ATPG +
Sbjct: 384 FENDLREKRCDPRDIVCVVIDEAHKARGKYAYGNVIGRIMEVNPHFRVLALSATPGKDSE 443
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332
++Q ++D L+I+ +E R E DV Y+ ++ E++ V +G++ + + ++++
Sbjct: 444 SVQEVVDQLHINQIEIRTEEAIDVQRYMFRKREEIVNVTLGKDLNLVKEKWAKLMQTQMD 503
Query: 333 RLSAIGLLQNRDYQTLSPVDLLNS--RDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR 390
L GLL N+D L P +NS +D+ R A ++ E AL Y
Sbjct: 504 PLMKAGLLHNQDPVLLHPF-AVNSMMKDRRRAAILRENRWLQANVRELSHMALSMQY--- 559
Query: 391 RLLSSHGIRPAYEMLEE-------KLKQGSFAR-FMSKNEDIRKVKLLMQQSISHGAQS- 441
L Y L+E K KQ S A+ M N + ++++ + +
Sbjct: 560 --LMEQSPTMFYSRLKERSMGYNTKGKQTSSAKQQMYANSNTTFIEIIHDLEVMQDHKGR 617
Query: 442 ---PKLSKMLEVLVDHFKT--KDPKH--------------------------------SR 464
PK+ K+ VL++HF D H +R
Sbjct: 618 ILHPKMLKLRNVLIEHFDAFKADQVHNAEAFEVSGHDVLGNTPTSGEVANLESSSQADTR 677
Query: 465 VIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKAS-KGQSQKVQQAVLEKFRAGGY 523
++F ++R +I+ L G KATEF+GQS ++ KG SQK Q+ V+ F+ G Y
Sbjct: 678 AMVFCSYRECCDEIVGFLNESG--FKATEFVGQSKSRSGKKGMSQKDQERVIADFKKGIY 735
Query: 524 NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
NV+VATSIGEEGLDI VDL +C++A +RM+QR+GRTGRK +G+I
Sbjct: 736 NVLVATSIGEEGLDIGSVDLTVCYEAVKDSIRMLQRIGRTGRKREGKI 783
>gi|26333531|dbj|BAC30483.1| unnamed protein product [Mus musculus]
Length = 519
Score = 361 bits (926), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 186/446 (41%), Positives = 263/446 (58%), Gaps = 30/446 (6%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK 155
A A WIYP N PVRDYQ I+++ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK
Sbjct: 65 AAAGALWIYPTNCPVRDYQLDISRSALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK 124
Query: 156 IVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEK 215
+VF AP++PLV QQ+EAC +++GIPQ +MTG R W ++RV F+TPQV+
Sbjct: 125 VVFMAPTKPLVTQQMEACFHVMGIPQSHMAEMTGSTQAVNRKEIWSSRRVLFLTPQVMVN 184
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
D+ G ++ CLV+DEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q
Sbjct: 185 DLTRGAVPATHVKCLVVDEAHKALGNYAYCQVVRELVKYTTHFRILALSATPGSDIKAVQ 244
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335
+I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 245 QVITNLLIGKIELRSEESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLI 304
Query: 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL
Sbjct: 305 HRNVLMKRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFALCISLYHGYELLQQ 364
Query: 396 HGIRPAYEMLE---EKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS---------- 441
G+R Y L + K + AR +S+NED K+ +Q + + + S
Sbjct: 365 MGMRSLYFFLSGIMDGTKGMTRARNELSRNEDFMKLYTHLQSAFAPASTSDASAFQRGNK 424
Query: 442 --------PKLSKMLEVLVDHFKTKDPK--------HSRVIIFSNFRGSVRDIMNALATI 485
PKL K+ EV+++HFK+ + K SRV+IFS+FR SV +I L
Sbjct: 425 EKKFVYSHPKLKKLEEVILEHFKSWNAKATTEKKCHESRVMIFSSFRDSVEEIAEMLLQH 484
Query: 486 GDLVKATEFIGQSSGKASKGQSQKVQ 511
+++ F+G +SGK +KG +QK Q
Sbjct: 485 RPVIRVMTFVGHASGKNTKGFTQKEQ 510
>gi|224104671|ref|XP_002333912.1| predicted protein [Populus trichocarpa]
gi|222838912|gb|EEE77263.1| predicted protein [Populus trichocarpa]
Length = 300
Score = 359 bits (922), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 185/289 (64%), Positives = 212/289 (73%), Gaps = 43/289 (14%)
Query: 40 NSTNFNLCSKANKKPSTCKQSTLDKFFGNLGP--KPQGTEEFNEGSSF---DESLCHVQI 94
N++++ C+K +T KQSTLDKF G P KP ++G+ D C V+I
Sbjct: 31 NNSSYYSCTKT----ATSKQSTLDKFIGRANPPVKPTVEVRHHQGNGIFNSDGRPCCVEI 86
Query: 95 DAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD- 153
DAEAAKTWIYPVNVP+R+YQ AITKTALF+NTLVALPTGLGKTLIAAVV+YN+FRWFPD
Sbjct: 87 DAEAAKTWIYPVNVPLREYQLAITKTALFTNTLVALPTGLGKTLIAAVVMYNYFRWFPDD 146
Query: 154 ------------GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK 201
GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQ S T++ S
Sbjct: 147 LMEGYGLGEKSSGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQFSHTEQLS--- 203
Query: 202 TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRIL 261
GTCL K+LVCLVIDEAHRA+GNY+YC AIREL+++PVQLRIL
Sbjct: 204 ------------------GTCLAKHLVCLVIDEAHRASGNYSYCVAIRELLAIPVQLRIL 245
Query: 262 ALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEV 310
ALTATPGSKQ +QHIIDNL +S LEYRNE D DV YVH+RKIEL+EV
Sbjct: 246 ALTATPGSKQPAVQHIIDNLQLSALEYRNERDPDVIPYVHDRKIELLEV 294
>gi|403415510|emb|CCM02210.1| predicted protein [Fibroporia radiculosa]
Length = 1363
Score = 359 bits (921), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 195/517 (37%), Positives = 297/517 (57%), Gaps = 39/517 (7%)
Query: 92 VQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF 151
+Q D A+K W+YP+N P RDYQF I K +L+ NTLVALPTGLGKT IA VV+ NF+ WF
Sbjct: 218 LQPDLLASKRWLYPLNQPKRDYQFNIVKNSLYENTLVALPTGLGKTFIAGVVMLNFYSWF 277
Query: 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQ 211
P+GK++F APS+PLV QQIEACH GIP ++TG+ +KR W KRVF++TPQ
Sbjct: 278 PEGKVIFLAPSKPLVAQQIEACHQTCGIPGAQAAELTGETPKSKRLKLWAEKRVFYMTPQ 337
Query: 212 VLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQ 271
L D+ S C + ++ +VIDEAH+ TG+YAY IR +M+ R+LALTATPG
Sbjct: 338 TLLSDLISANCDPRDIILIVIDEAHKGTGDYAYAQVIRFMMAKNPHFRVLALTATPGGNP 397
Query: 272 QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYT 331
+ +Q I+D L+IS +E R+E+ D+ Y+H + E ++M ++ V++ + + ++++P
Sbjct: 398 EAVQAIVDCLHISHIEIRDENSLDLRPYLHKKASEQHIIKMDEDVVKVRDLLAKIMQPLI 457
Query: 332 SRLSAIGLLQ-NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGE-----------VEAY 379
++ G ++ + D L P ++ + RQ P + +EA
Sbjct: 458 RQVQNSGAMRGSSDPTMLHPFRCQSASQELRQRKAPAWALAAAAKLGPLARAMGYLLEAS 517
Query: 380 FGALITLYH--IRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISH 437
G T+ + + G + + L++ S + K + +K +
Sbjct: 518 MGMCYTVISGIVYGFDGTTGKKSTSRAAQSGLQKDSAFGVLLKEIEAQKNRGF------- 570
Query: 438 GAQSPKLSKMLEVLVDHF---------------KTKDPKHSRVIIFSNFRGSVRDIMNAL 482
+ PK+ K+ +L+ HF + SRV++F +FR V +++ L
Sbjct: 571 -SLHPKMEKLRILLIQHFANHMFDNEDTGRASGNSHPATQSRVMVFVSFRECVDEVVEVL 629
Query: 483 ATIGDLVKATEFIGQSSGK-ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
L+KAT FIGQ + K KG Q+ Q V++KF++G +NV+V+TSIGEEGLDI E+
Sbjct: 630 NREEPLIKATRFIGQGTDKQGRKGIGQREQLEVIKKFKSGEFNVLVSTSIGEEGLDIGEI 689
Query: 542 DLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPE 578
D+++C+DA +P+RM+QR+GRTGRK DG I HI E
Sbjct: 690 DMIVCYDAQKTPIRMLQRIGRTGRKKDG-IVHILLAE 725
>gi|145348608|ref|XP_001418738.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578968|gb|ABO97031.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 551
Score = 359 bits (921), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 202/524 (38%), Positives = 302/524 (57%), Gaps = 35/524 (6%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
+D EA +T++YP + RDYQF + + AL +N+LV LPTGLGKTLIAAVV+YN++RWFP
Sbjct: 1 MDPEAIQTYVYPAQISRRDYQFDMARNALLTNSLVCLPTGLGKTLIAAVVMYNYYRWFPT 60
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQIS---PTKRASFWKTKRVFFVTP 210
GKI+F AP+RPLV QQ+ ACH +VGIP TI + G R FW+ KR+FF TP
Sbjct: 61 GKIIFMAPTRPLVDQQMSACHTVVGIPASDTIVLMGSTKKDDSGSRRDFWREKRLFFCTP 120
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
+ D++SG K +VC+V+DEAH A G YA +R L V+ R+LALTATPG
Sbjct: 121 HTVANDLESGDLDAKQIVCVVVDEAHHARGQYASAEVLRLLHERKVRFRLLALTATPGQG 180
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+Q +++ L I +++R++ D DVS Y H R++ + +V+ Q + + + E++RP
Sbjct: 181 LDEVQKVVETLRIGRIDFRSDQDPDVSRYTHKREMTVEKVKPDQAMSHVQDMLCELLRPC 240
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP--NLPQIKFGEVEAYFGALITLYH 388
++L +G L ++ L+ + + R PP L + + L
Sbjct: 241 CAQLVNMGALGEAGFRMLTFIKNKATNGASRVEPPAWFTLQSAQQAIYRNQHQTAMELSK 300
Query: 389 IRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKL--LMQQSISHGA-QSPKLS 445
LL +G + AY+ ++++ + S + D V+L L++ S+GA SPKL
Sbjct: 301 AYELLLKYGAKSAYDYIDKRGRDKS--NTLVHRSDPVSVELVDLIRSMSSNGAHHSPKLD 358
Query: 446 KMLEVLVDHFK--TKDPKHSRVIIFSNFRGSVRDIMNALATI------GDLVKATEFIGQ 497
++ +L HF+ T D +RVIIF+++R SV+DI+ AL + +K EF+GQ
Sbjct: 359 RLTSILKQHFRDATAD---TRVIIFTSYRESVKDIVQALREVPAGEDTACKIKVAEFVGQ 415
Query: 498 -------------SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
++ + +KGQ+QK Q+ L+ FRAG N +VATSIGEEGLDI VDL+
Sbjct: 416 GDTGATGKKRAPGATSRGTKGQTQKEQKQTLDDFRAGTLNTLVATSIGEEGLDIPSVDLI 475
Query: 545 ICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQ 588
FD V +R IQRMGRTGR DG++ + ++ + + EQ
Sbjct: 476 FFFDV-VDTIRAIQRMGRTGRARDGKVVILATEGKEYAKFTSEQ 518
>gi|154323886|ref|XP_001561257.1| hypothetical protein BC1G_00342 [Botryotinia fuckeliana B05.10]
Length = 1170
Score = 358 bits (920), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 199/504 (39%), Positives = 276/504 (54%), Gaps = 77/504 (15%)
Query: 87 ESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY 145
E H +D EA KTW+YP N+ P R YQ+ I LF+N LVALPTGLGKT IAA ++
Sbjct: 247 EPPTHHSLDREAIKTWVYPNNLGPERRYQYTIVHKGLFNNLLVALPTGLGKTFIAATIML 306
Query: 146 NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205
NFFRW + +IVF AP++PLV QQ++AC I GIP+ T +TG +P RA W KRV
Sbjct: 307 NFFRWTKNSQIVFMAPTKPLVSQQVKACFEIAGIPRSSTTMLTGDQTPALRAEEWDEKRV 366
Query: 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTA 265
FF+TPQ +E D+++G K + LV+DEAHRATG YAY + L R+LALTA
Sbjct: 367 FFMTPQTVENDLKTGIADPKRIALLVVDEAHRATGKYAYTKVVEFLRRFNKSFRVLALTA 426
Query: 266 TPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE 325
TPGS + +Q +IDNL I+ +E R E E+++I + W
Sbjct: 427 TPGSTVEAVQEVIDNLEIAEVEIRTE-----------------------ESIDIKEKTWM 463
Query: 326 VIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALIT 385
S G N + G + A F L +
Sbjct: 464 A--------SGAGKSANMGVK---------------------------GMMNALFTVLTS 488
Query: 386 LYHIRRLLSSHGIRPAYEML-------EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHG 438
+ H ++L+ HGI P + + E K G + + + D +K+ +Q I+
Sbjct: 489 MGHAIKILNFHGIGPFFSNIKDFRAEVEGNKKGGKYKNQVVNDPDFKKMMDRIQSWINKE 548
Query: 439 A--QSPKLSKMLEVLVDHF------KTKD---PKHSRVIIFSNFRGSVRDIMNALATIGD 487
PKL+ + + +++HF T D P +RVI+F+ +R S DI L G
Sbjct: 549 EFIGHPKLTHLCDTVLNHFLDAGAGLTGDNMPPSSTRVIVFTEYRDSAEDIARVLNKHGP 608
Query: 488 LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
++KA+ F+GQS K S+G +Q+ Q + KF+AGG NVIVATSIGEEGLDI EVDL++C+
Sbjct: 609 MIKASVFVGQSDSKRSEGMNQEKQLETIRKFKAGGINVIVATSIGEEGLDIGEVDLIVCY 668
Query: 548 DANVSPLRMIQRMGRTGRKHDGRI 571
D++ SP+RM+QRMGRTGRK G+I
Sbjct: 669 DSSSSPIRMLQRMGRTGRKRAGKI 692
>gi|307207083|gb|EFN84892.1| Fanconi anemia group M protein [Harpegnathos saltator]
Length = 1344
Score = 358 bits (918), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 194/499 (38%), Positives = 285/499 (57%), Gaps = 36/499 (7%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D A TW+YP N PVR YQ+ I +TAL+ NTLV LPTGLGKT IAAV++YNF+RWFP
Sbjct: 19 FDLSAGNTWVYPENYPVRKYQYNIVETALYHNTLVCLPTGLGKTFIAAVIMYNFWRWFPF 78
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GKIVF AP++PLV QQI+AC+ I+GIP I +TG ++ R +W KR+ F TPQV
Sbjct: 79 GKIVFLAPTKPLVGQQIDACYEIMGIPSVDMIKLTGAVNQKNRQIYWFKKRIIFATPQVF 138
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
KD++ + C+V+DEAH+A G ++YC +IR L + RILAL+ATPG+K
Sbjct: 139 HKDLEKSIVPSHLVKCVVVDEAHKALGKHSYCESIRILSTQNKYFRILALSATPGNKIDN 198
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+ +I NLYIS LE R+E D+ YV+ RKI+ I + + E + R ++ +
Sbjct: 199 VHEVIQNLYISHLELRDEDSIDIIPYVNKRKIDTILIPLSNELAQFKERYIIIMDRHVKF 258
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L +L+ +S + + ++F++ + +G++ L+T+YH L+
Sbjct: 259 LIQYNVLRGHT-ANISKGRIFHLLNEFKERTNKSG---NYGQIMKTLNILLTMYHAYDLM 314
Query: 394 SSHGIRPAYEMLEEKLKQGSFARFMSKNED-IRKVKLLMQQSI---------SHGAQSP- 442
HG+R K Q +F NE+ +R++ ++ + H ++ P
Sbjct: 315 IRHGLRAFC-----KFYQNHSDKFWMNNENQLRQLLYDIETYLGPFPDILPNGHVSEMPT 369
Query: 443 -------KLSKMLEVLVDHFKTKDPKH--SRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
K K+ E+L HF+ + ++ +R I+F +R V ++ L L++
Sbjct: 370 NIMFGHNKFYKLKELLERHFRKNNGENADTRAIVFVEYRDIVNEVYILLLQSKPLIRPQM 429
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV-S 552
F+GQ+S Q QK Q LE FR NV+++TSIGEEGLD+ EVDL+ICFD + S
Sbjct: 430 FVGQAS------QKQKQQIKALEDFRNNHVNVLISTSIGEEGLDVGEVDLIICFDVSQHS 483
Query: 553 PLRMIQRMGRTGRKHDGRI 571
P R++QRMGRTGRK DG I
Sbjct: 484 PTRLVQRMGRTGRKRDGHI 502
>gi|449017481|dbj|BAM80883.1| similar to ATP-dependent RNA helicase [Cyanidioschyzon merolae
strain 10D]
Length = 1770
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 202/547 (36%), Positives = 302/547 (55%), Gaps = 36/547 (6%)
Query: 44 FNLCSKANKKPSTCKQSTLDKFFGNLGPKPQGTEEFNEGS------SFDESLCHVQIDAE 97
F LC++ +++P+ Q+ P E NE + + DE V +D E
Sbjct: 125 FPLCAR-DERPAAVPQA------------PFNNERINETALEFPLCARDERPAAVTLDEE 171
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
AA +W +P + +R+YQF I + AL NTLV LPTGLGKTLIAAVV+ N+ RW+PDG +V
Sbjct: 172 AANSWTFPGALHIREYQFNIVRRALTRNTLVCLPTGLGKTLIAAVVMLNYMRWYPDGIVV 231
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP+RPLV QQ++AC+ GI + T ++TG R + W ++RVFF TPQV+ D+
Sbjct: 232 FVAPTRPLVHQQMKACYQSAGIAPQLTAELTGHTRLAARRALWHSRRVFFSTPQVMLNDV 291
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIREL-MSVPVQLRILALTATPGSKQQTIQH 276
C ++ +VC+V DEAHRATG YAYC + E+ S R+LALTATPGS IQ
Sbjct: 292 LRHICPVQRIVCVVFDEAHRATGRYAYCGLVSEIERSTGGCFRVLALTATPGSSANAIQQ 351
Query: 277 IIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSA 336
+I NL I+ LE+R ESD DV Y + R++ + V + ++ + +L A
Sbjct: 352 VIHNLRIAHLEFRQESDPDVLPYTYERQVRVERVPLDAAIAQVLGAFQRSLASTLQKLCA 411
Query: 337 IGLLQNRDYQTLSPVDLLNSRDKF----RQAPPPNLPQIKFGEVEAY--FGALITLYHIR 390
G R+ + + L+ ++ ++ R+ N+ + V + F + L
Sbjct: 412 HGAFYQRNPEKVQHYQLVIAQRRWIEASRRQQTSNVNASRTLPVALFRDFAHALLLSRSV 471
Query: 391 RLLSSHGIRPAYEMLEEKLKQGSFARFMSKNE-----DIRKVKLLMQQSISHGAQSPKLS 445
LL S G+ LE++ + S NE +++++ L ++Q + HG + PK+
Sbjct: 472 ELLRSQGLGTCVRYLEQERTAQAKGNPRSPNELTRRSELQELHLRVKQLLEHGTRHPKIE 531
Query: 446 KMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASK 504
+ E++V HF + +RV+IF +R V ++ AL+ V+ FIGQ A+
Sbjct: 532 RCKELVVQHFLRHGSSASTRVMIFVQYRDVVAELEAALSQAAPTVRPASFIGQ----ANS 587
Query: 505 GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTG 564
G +Q Q ++ FR G N +V+TSIGEEGLDI VDL+I FDA SP+RM+QRMGRT
Sbjct: 588 GMTQADQHRIMRLFRQGALNCLVSTSIGEEGLDIGHVDLIISFDALGSPIRMLQRMGRTA 647
Query: 565 RKHDGRI 571
R G++
Sbjct: 648 RARAGQV 654
>gi|388581794|gb|EIM22101.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 1433
Score = 357 bits (915), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 291/489 (59%), Gaps = 33/489 (6%)
Query: 95 DAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
D +A K WIYP N P+RDYQF IT LF NTLVALPTGLGKTLIA VVI N+++WFP
Sbjct: 197 DTQAIKRWIYPTNYPIRDYQFDITTQCLFQNTLVALPTGLGKTLIAGVVIMNYYKWFPTA 256
Query: 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLE 214
K+VF AP++PLV QQ +ACH++ GIPQ + G + KR + K KRV ++TPQ L
Sbjct: 257 KVVFLAPTKPLVDQQAKACHDVCGIPQADVAVLYGDVPQHKRENIIKEKRVLYMTPQTLN 316
Query: 215 KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTI 274
D+Q G C + LV +VIDEAH++ G+++YC+ +R +MS R+LALTATPG+ + +
Sbjct: 317 NDLQKGVCDPQDLVLIVIDEAHKSQGDFSYCSVVRHMMSTNPHFRVLALTATPGNTPEQV 376
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIE--LIEVEMGQEAVEINNRIWEVIRPYTS 332
Q IIDNL+IS + RN+S D+ Y+H + E LI+++ + + + WE I T
Sbjct: 377 QPIIDNLHISNIAIRNDSSPDIKQYIHKKFFEEHLIDMDYFTDDLCVQ---WERIVKRT- 432
Query: 333 RLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQI--KFGEVEAYFGALITLYHIR 390
I L +D + P +LN + R+ P + + + + Y IT
Sbjct: 433 ----IEPLVQKD---MLPEHILN---RLRRIHPYQIDSLRPRILPHQGYLHGTIT----- 477
Query: 391 RLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKV-KLLMQQSISHGAQS-----PKL 444
+S + E+ + L+ + + + E + + KLL++ I + PK+
Sbjct: 478 --KASEAQVQSIELFYKNLQDINGKKTKPEPETKKTIEKLLLEIDIERNKRGGNLSHPKM 535
Query: 445 SKMLEVLVDHFK--TKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKA 502
K+ +L+DHF + +R I+F + R +V ++++ + T +++A+ F+GQSS K
Sbjct: 536 DKVQSLLLDHFTNFSNGNTETRAIVFISLRDTVEEVVDQINTNSPILRASAFVGQSSAKG 595
Query: 503 SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
KG +QK QQ V+ ++AG +NV+V+TSIGEEGLDI ++DL I +D S + M+Q++GR
Sbjct: 596 KKGLNQKQQQKVMNDYKAGTFNVLVSTSIGEEGLDIGDIDLTITYDPGKSSISMLQKIGR 655
Query: 563 TGRKHDGRI 571
TGRK G +
Sbjct: 656 TGRKRQGHV 664
>gi|189203315|ref|XP_001937993.1| helicase C-terminal domain containing protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985092|gb|EDU50580.1| helicase C-terminal domain containing protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1053
Score = 356 bits (913), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 194/487 (39%), Positives = 289/487 (59%), Gaps = 19/487 (3%)
Query: 87 ESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY 145
E H +++ EA KTW+YP N+ +RDYQF I + LF N LVALPTGLGKT IAA +I
Sbjct: 125 EPPTHHKLNPEAIKTWVYPTNLGTIRDYQFNIVQRGLFHNLLVALPTGLGKTFIAATIIL 184
Query: 146 NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205
N+FRW D +IVF AP++PLV QQIEAC+ I GIP+ T +TG + RA WK KRV
Sbjct: 185 NWFRWTLDAQIVFVAPTKPLVAQQIEACYKIAGIPRSCTTMLTGGVQTGLRAEEWKDKRV 244
Query: 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTA 265
FF+TPQ L D++SG K +V LV+DEAHRATG YAY + L R++ALTA
Sbjct: 245 FFMTPQTLLNDLKSGYADPKRIVLLVVDEAHRATGAYAYVEVVSFLRRFNTSFRVVALTA 304
Query: 266 TPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW- 324
TPG+ +++Q +ID L IS +E R E+ D+ SYVH RKIE +V + +E+ ++
Sbjct: 305 TPGADVESVQKVIDGLEISRVEIRTENSMDICSYVHQRKIEK-QVFQNTDEMEMCMDLYS 363
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI 384
E ++P + ++ + +++ + L+P ++ K+ N + V F L
Sbjct: 364 EALQPLVNTVAGLNAYWSKNPRDLTPFGCQQAKKKWFMEIGRNANRGLQSTVHTIFAILA 423
Query: 385 TLYHIRRLLSSHGIRPAY----EMLEEKLKQGS-FARFMSKNEDIRKVKLLMQQSIS--H 437
++ H LL HG+ P Y E +E K S + + + ++ +K+ + +Q I+ +
Sbjct: 424 SISHGMDLLKFHGMGPFYVKMKEFQDEATKTKSKYKKQILDSDAWKKLMVRLQGWITDDN 483
Query: 438 GAQSPKLSKMLEVLVDHFKTKD---------PKHSRVIIFSNFRGSVRDIMNALATIGDL 488
PKL + +V++DHF P +R+++F++FR S +I L +
Sbjct: 484 FVGHPKLEYLQQVILDHFMNAGDGRNVDGAPPSQTRIMVFAHFRDSAEEIARILKRHEPM 543
Query: 489 VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD 548
++ F+GQ+ GK S+G +QK Q +EKF+ G +N ++ATSIGEEGLDI EVDL+IC+D
Sbjct: 544 IRPRIFVGQAHGKNSEGMTQKDQLEAVEKFKNGEFNTLIATSIGEEGLDIGEVDLIICYD 603
Query: 549 ANVSPLR 555
+ SP+R
Sbjct: 604 SKASPIR 610
>gi|307176233|gb|EFN65868.1| Fanconi anemia group M protein [Camponotus floridanus]
Length = 1323
Score = 355 bits (911), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 194/490 (39%), Positives = 281/490 (57%), Gaps = 27/490 (5%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A TWIYP N PVR YQ+ I K AL+ NTLV LPTGLGKT IAAVV+YNF+RW+P GKIV
Sbjct: 23 AGNTWIYPENYPVRQYQYNIVKAALYQNTLVCLPTGLGKTFIAAVVMYNFWRWYPFGKIV 82
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQI+AC+ ++GIP I++TG ++ KR W KR+ F TPQV D+
Sbjct: 83 FLAPTKPLVAQQIDACYEVMGIPSVDMIELTGAVNKKKREIAWHKKRIIFATPQVFHNDL 142
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
+ + C+V+DEAH+A G ++YC I+ L + R+LAL+ATPG+K + I
Sbjct: 143 EKKIVPSHLVKCVVVDEAHKALGKHSYCECIKILYTQNQYFRVLALSATPGNKIDNVHEI 202
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL+IS LE R+E+ D+ YV+ RK+++I V + E E ++ ++ + L
Sbjct: 203 IQNLHISHLELRDETSIDIMPYVNKRKVDIILVPLSHELAEYKDKYIIIMDRHVKFLMQY 262
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L+ + +S + + +F+ + +G++ L+T+YH L+ HG
Sbjct: 263 NILR-AETANISKGRIFHLLKEFQAKTDKSG---NYGQIMKTLNILLTMYHAYELMVRHG 318
Query: 398 IRP---AYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSP-----------K 443
+R Y+ +K + + S DI +V L I P K
Sbjct: 319 LRAFCKFYQNHSDKFWMNNENQLQSLLNDI-EVYLGPFPDILPNGDVPEIPADLVFGHNK 377
Query: 444 LSKMLEVLVDHFK-TKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKA 502
K+ E+L HFK D + +R I+F +R V ++ L L++ F+GQ+S
Sbjct: 378 FHKLKELLEHHFKYNNDRQDTRAIVFIEYRDIVNEVYILLLKSKPLIRPQMFVGQAS--- 434
Query: 503 SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV-SPLRMIQRMG 561
Q QK Q LE FR+ NV+++TSIGEEGLD+ EVDL+ICFD + SP+R++QRMG
Sbjct: 435 ---QKQKQQIKALEDFRSNHVNVLISTSIGEEGLDVGEVDLIICFDVSQHSPIRLVQRMG 491
Query: 562 RTGRKHDGRI 571
RTGRK DG I
Sbjct: 492 RTGRKRDGHI 501
>gi|303277201|ref|XP_003057894.1| dead-box like helicase with PHD domain [Micromonas pusilla
CCMP1545]
gi|226460551|gb|EEH57845.1| dead-box like helicase with PHD domain [Micromonas pusilla
CCMP1545]
Length = 1823
Score = 355 bits (910), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 232/655 (35%), Positives = 334/655 (50%), Gaps = 102/655 (15%)
Query: 7 PIEINGDDDDEFDWEAAVREIDTACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLD-KF 65
PIEI+GD D W +A + A ++ + + + + +PS ST + ++
Sbjct: 236 PIEIDGDGDA---WWSAPPPVAAAAAAAPRRQAPAAVHHHTHPSKWQPSQHVASTPEGQY 292
Query: 66 FGNLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSN 125
G L P GT ++G + +D AA++++YP + RDYQ+ IT+ AL +N
Sbjct: 293 AGRLTPSAMGTPN-SQGLIRCSDANGMLLDPHAAQSYVYPGQLVRRDYQYNITRDALTTN 351
Query: 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTI 185
+LV LPTGLGKTLIAAVV+YNF+RWFP GK+VF AP+RPLV QQ AC +I GIP+
Sbjct: 352 SLVCLPTGLGKTLIAAVVMYNFYRWFPKGKVVFLAPTRPLVDQQKAACRDICGIPENDIC 411
Query: 186 DMTGQI----SPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN 241
+ G S T+RA FW KRVFF TPQ +E DI S K +VCLVIDEAHRA G
Sbjct: 412 VLMGSTKKDESGTRRA-FWDQKRVFFCTPQTMENDIASSVLPAKDVVCLVIDEAHRAKGK 470
Query: 242 YAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVH 301
+AYC +R L V R+LALTATPG +Q ++ NL I +++R++ D DV + H
Sbjct: 471 HAYCGVVRMLWDRNVSFRLLALTATPGHDIADVQQVVRNLNIGRIDFRSDKDVDVKRHTH 530
Query: 302 NRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVD--------- 352
NR I+L V+ + E+ + + +V+RP L+++G L + V+
Sbjct: 531 NRSIQLESVKATRAISEVQDMLRDVLRPMLKTLTSMGALPTEGVKMARFVEGTSKDIPQP 590
Query: 353 ---LLNSRD--KFRQAPPPNLPQIKFGE-VEAYFGALITLYHIRRLLSSHGIRPAYEMLE 406
L RD A PP F +++YF + + LLS + + A + +E
Sbjct: 591 FTIQLAQRDLQNGNTAVPPAKKNYAFSLCLQSYF-----IARLNALLSGYSAQQAVDYVE 645
Query: 407 EKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQ-SPKLSKMLEVLVDHFKTKDPKHSRV 465
++ +G + +R+V +++ HGA SPKL+++ +++ HF T +P +R
Sbjct: 646 DQNTKGYIGALFGASPVMREVLDMLRSMAGHGAHHSPKLARLTQIIRRHFATNNPA-TRA 704
Query: 466 IIFSNFRGS----VRDIMNALATIGD---------------------------------- 487
I+F+++R S VR + T G
Sbjct: 705 IVFTSYRDSVRDIVRALREVTVTTGGGNNLGPGDPLVDPEKGQKTVTGMFSAASGSGGGS 764
Query: 488 ----------------LVKATEFIGQSSG---------------KASKGQSQKVQQAVLE 516
+K EFIGQ + +KGQSQK Q+AVL+
Sbjct: 765 GDTAGVPPEVPDGAECRIKVAEFIGQGDSSKGGGGGGAKGAGAARGTKGQSQKEQKAVLD 824
Query: 517 KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
FR G N IVATSIGEEGLDI VDL++ FD V +R IQRMGRTGR DG++
Sbjct: 825 AFRHGSLNTIVATSIGEEGLDIPAVDLIVFFDV-VDTIRTIQRMGRTGRARDGKV 878
>gi|363735044|ref|XP_003641500.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein
homolog [Gallus gallus]
Length = 1880
Score = 352 bits (902), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 186/505 (36%), Positives = 276/505 (54%), Gaps = 69/505 (13%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
WIYP N P R YQ + + ALF+NTL+ LPTGLGKT +AAVV+YNF A
Sbjct: 76 WIYPTNRPERPYQLRMARAALFANTLLCLPTGLGKTFVAAVVMYNFXXXXXXXXXGTQAL 135
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
SR W ++RVFF+TPQ++ D+ GT
Sbjct: 136 SR---------------------------------RELWASRRVFFLTPQIMVNDLSRGT 162
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
C + CLV+DEAH+A GN+AYC ++EL Q R+LALTATPGS + +Q ++ NL
Sbjct: 163 CPAVEVKCLVVDEAHKALGNHAYCQVVKELSRYTTQFRVLALTATPGSDTKAVQQVVSNL 222
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
I+ +E +E ++ Y H R++E I V +G+E I V+ + RL +G+L
Sbjct: 223 LIAQIELCSEDSPEIQPYSHERQVEKIVVPLGEELGGIQRAYIHVLETFAGRLIKLGVLA 282
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPA 401
RD +L+ ++ +RD++R+ P P ++ G +E F I+LYH LL G+R
Sbjct: 283 RRDVPSLTKYQIILARDQYRKNPSPQNVGMQPGIIEGDFALCISLYHGYELLQQMGVRSL 342
Query: 402 YEMLEEKLKQGSFA-----RFMSKNEDIRKVKLLMQQSISHGAQS--------------- 441
+ L + GS + +NED ++ + S Q+
Sbjct: 343 FIYL-CGIMDGSKGLTRTKNELGRNEDFMRLYQQLTDMFSDTCQTSANGNLHKMSENKKE 401
Query: 442 -----PKLSKMLEVLVDHFKTKDPKH----------SRVIIFSNFRGSVRDIMNALATIG 486
PKL K+ E++++HFK++ + +RV+IFS+FR SV++I L+
Sbjct: 402 FIYSHPKLKKLEEIVIEHFKSRKMGYQTTSGGTCVDTRVMIFSSFRDSVQEIAEMLSRFS 461
Query: 487 DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
+V+ F+G S+GK++KG +QK Q V+++FR GGYN +V+T +GEEGLDI EVDL+IC
Sbjct: 462 PVVRVMTFVGHSTGKSTKGFTQKEQLEVVKRFREGGYNTLVSTCVGEEGLDIGEVDLIIC 521
Query: 547 FDANVSPLRMIQRMGRTGRKHDGRI 571
FDA SP+R++QRMGRTGR+ GR+
Sbjct: 522 FDAQKSPIRLVQRMGRTGRQRQGRV 546
>gi|270010010|gb|EFA06458.1| hypothetical protein TcasGA2_TC009341 [Tribolium castaneum]
Length = 1313
Score = 348 bits (893), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 194/499 (38%), Positives = 277/499 (55%), Gaps = 84/499 (16%)
Query: 75 GTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGL 134
T+ N+ S + D +A +TWIYP N+P+R+YQ+ IT+ AL NTLV+LPTGL
Sbjct: 7 NTQGINDAGSLCQDPATRGFDLQAGQTWIYPTNLPIREYQYTITEKALHWNTLVSLPTGL 66
Query: 135 GKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPT 194
GKT IAAVV+YNF+RW+P K++F AP+RPLV QQ++AC+NI+ IPQE T ++TG
Sbjct: 67 GKTFIAAVVMYNFYRWYPHDKVIFMAPTRPLVKQQMDACYNIMAIPQEVTAELTGTKIQQ 126
Query: 195 KRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV 254
R W+ KRVFF+TPQVL+ D+ L + CLV DEAHRA GN+AYC +R+L+
Sbjct: 127 SRTEIWQNKRVFFITPQVLQNDLNIIVELGPKIKCLVFDEAHRAKGNHAYCEVVRKLLPE 186
Query: 255 PVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQ 314
R+LAL+ATPG+ + + ++ NL I+ LE+R+E DV YV R +E + V +G+
Sbjct: 187 NKLFRVLALSATPGNSSKDVLDVMRNLLIAHLEFRSEESPDVKPYVFERALETVVVPLGE 246
Query: 315 EAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK-F 373
+ +I RDK+ Q N+ I+
Sbjct: 247 KLQQI-------------------------------------RDKYIQG---NVSIIQIM 266
Query: 374 GEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQ 433
+++AY G P E+ + L G+FA +
Sbjct: 267 DDLQAYLG------------------PDPEV--QPLPDGTFAE--------------IPA 292
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
SI G PK ++ ++LV HF D +RVI+F +R S + L L+++
Sbjct: 293 SIKFG--HPKFYQLRDILVAHFTNSDA-STRVIVFFEYRESATEAYALLTRSFPLIRSRV 349
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD-ANVS 552
F+GQ + G +QK Q ++ FR G N +++T IGEEGLD+ EVDL++CFD AN S
Sbjct: 350 FVGQRA-----GVTQKEQINTVKSFREGTCNTLLSTCIGEEGLDVGEVDLIVCFDIANKS 404
Query: 553 PLRMIQRMGRTGRKHDGRI 571
P+RMIQRMGRTGRK +GR+
Sbjct: 405 PIRMIQRMGRTGRKKEGRV 423
>gi|332030741|gb|EGI70417.1| Fanconi anemia group M protein [Acromyrmex echinatior]
Length = 1326
Score = 347 bits (890), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 188/494 (38%), Positives = 275/494 (55%), Gaps = 26/494 (5%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D A TWIYP N P+R YQ+ I ++AL+ NT+V LPTGLGKT IAAVV++NF+RW+P
Sbjct: 17 FDLSAGNTWIYPENYPIRQYQYDIVQSALYRNTMVCLPTGLGKTFIAAVVMFNFWRWYPS 76
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GKIVF AP++PLV QQI+AC+ ++GIP I++TG + R W KR+ F TPQV
Sbjct: 77 GKIVFLAPTKPLVAQQIKACYEVMGIPNVDMIELTGAVIQKNREIAWLKKRIIFATPQVF 136
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
D++ + C+VIDEAH+A G ++YC +R L + RILAL+ATPG+K
Sbjct: 137 HNDLEKSIIPSHLIKCVVIDEAHKALGKHSYCECVRILSTQNQYFRILALSATPGNKLDN 196
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+ +I NL IS LE R+E+ D+ Y++ RK+++I V + E R ++ +
Sbjct: 197 VHEVIQNLNISHLELRDENSIDIVPYINKRKVDIILVPLSNELAAFKERYIIIMDRHVKF 256
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L +LQ +S + + +F+ + +G++ L+T+YH L+
Sbjct: 257 LMQCNVLQGH-TANISKGRVFHLLREFKMKTNKSG---NYGQIMKTLNILLTMYHAYELM 312
Query: 394 SSHGIRP---AYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSP-------- 442
HG+R YE +K + ++ DI + +G S
Sbjct: 313 IRHGLRAFRKFYETHSDKFWIHNESQLQDLLHDIEAYLGPFPELYPNGDVSEIPVNIVFG 372
Query: 443 --KLSKMLEVLVDHFKT--KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQS 498
K K+ E+L HF + D K +R I+F +R V ++ L +++ F+GQ
Sbjct: 373 HNKFHKLKELLEHHFNSVNGDRKDTRAIVFVEYRDIVNEVYILLLQSKPIIRPQMFVGQV 432
Query: 499 SGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV-SPLRMI 557
S Q QK Q LE FR+ NV+++TSIGEEGLD+ EVDL+ICFD + SP+R++
Sbjct: 433 S------QKQKQQIKALEDFRSNHVNVLISTSIGEEGLDVGEVDLIICFDVSQHSPIRLV 486
Query: 558 QRMGRTGRKHDGRI 571
QRMGRTGRK DG I
Sbjct: 487 QRMGRTGRKRDGHI 500
>gi|328874050|gb|EGG22416.1| ATP-dependent RNA helicase [Dictyostelium fasciculatum]
Length = 1558
Score = 346 bits (888), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 204/521 (39%), Positives = 296/521 (56%), Gaps = 48/521 (9%)
Query: 72 KPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALP 131
KP +EFN ++ID +A KT+IYP N P RDYQ+ I K A++ NTLV LP
Sbjct: 286 KPPENDEFN-----------LEIDQDALKTFIYPSNFPKRDYQYNIIKHAIYQNTLVCLP 334
Query: 132 TGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQI 191
TGLGKT IA+V++ N++RWFP KI+F ++PLV QQI+A ++ G+P+ I TG +
Sbjct: 335 TGLGKTFIASVLMLNYYRWFPTSKIIFMVHTKPLVSQQIDAFYHTTGVPRSSIIQFTGTV 394
Query: 192 SPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIREL 251
+PTKR+ W+ KRVFF+TP +L DI+ C + +V+DE+HRAT N AYC A+RE+
Sbjct: 395 NPTKRSELWEKKRVFFLTPHILNNDIRDKRCDPSNISLIVMDESHRATKNAAYCQALREV 454
Query: 252 MSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVE 311
QLR++ LTA+PGSK+ TIQ +I+N S ++ R+E+ D+ YV ++I++ VE
Sbjct: 455 TKYTGQLRLVGLTASPGSKKDTIQAVINNCLASYMDIRSENSLDIRPYVFKKQIDVEVVE 514
Query: 312 MG---QEAVEINNRI-WEVIRPYTSRLSAIGLLQNRDYQTLS---PVDLLNSRDKFRQAP 364
+ QE VE+ N+ W +PY +I L ++Q LS ++++ ++
Sbjct: 515 LSPQIQELVELINKCKW---KPYDIIKRSIPYL--VEFQKLSIYYVINMMQNQKHTNNPR 569
Query: 365 PPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDI 424
P+ P I G L L L HG+ L K+ + + + D
Sbjct: 570 GPDWPSIN------NLGVLRALLDCSNELIKHGLVCFKNKL--KIFADNTKKCYKETLDS 621
Query: 425 RKVKLLM---QQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNA 481
KLL+ Q+ I KL K+ +V+ HF +RV++F+ +R SV +I++
Sbjct: 622 TYWKLLVSKTQKLIDENVYHDKLIKLGQVIESHF-VSSTTSTRVMVFTEYRDSVSEIISY 680
Query: 482 LATIGDLVKATEFIGQSSGK------------ASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
L +K F+GQS+GK SKG Q Q +VL++FR G YN +V+T
Sbjct: 681 LGN-NPSIKVMPFLGQSNGKVVKGPKGTTRTVGSKGLDQSEQASVLKRFRDGEYNTLVST 739
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
SIGEEGLD EVDL++C+D S R IQRMGRTGRK GR
Sbjct: 740 SIGEEGLDFGEVDLIVCYDTPQSTTRNIQRMGRTGRKRQGR 780
>gi|443921956|gb|ELU41478.1| fanconi anemia complementation group M [Rhizoctonia solani AG-1 IA]
Length = 1789
Score = 346 bits (887), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 194/491 (39%), Positives = 284/491 (57%), Gaps = 37/491 (7%)
Query: 95 DAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
D + + WI+P+N RDYQ+ I +LF NTLV+LPTGLGKT IA V+ NF+ WFP G
Sbjct: 754 DPKTIENWIFPLNKEKRDYQYNIISRSLFDNTLVSLPTGLGKTFIAGSVMLNFYTWFPTG 813
Query: 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLE 214
K+VF AP++PLV QQIEACH GIP I++TG ++ R W+ KRVF++TPQ
Sbjct: 814 KVVFVAPTKPLVAQQIEACHESCGIPGRDAIELTGTVTKNLRRRAWEEKRVFYMTPQTFF 873
Query: 215 KDIQSGTCLMKYLVCLVIDE--AHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQ 272
D++ GTC + +V +VI +HRATG+YAY T + LM+ RILAL+ATPG +
Sbjct: 874 NDLKDGTCDAEDIVLVVIGRLSSHRATGSYAYVTIVHYLMARNPHHRILALSATPGKNSE 933
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIE---VEMGQEAVEINNRIWEVIRP 329
T+Q I+D L+IS +E R+E+ D+ Y+ +K ++ ++ Q A NN E +
Sbjct: 934 TVQSIVDGLHISRIEIRDENSMDLQKYIF-KKTDMDTQPLLKTVQTAGCCNNADPETMNA 992
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI--TLY 387
Y + + +D + + L S +A G L+ ++
Sbjct: 993 YRATAEITSAMHTKDKNKMRVLHPLKSLAVLARA----------------MGYLVECSVA 1036
Query: 388 HIRRLLSSHGIRPAYEMLEEKLKQGSFAR---FMSKNEDIRKVKL--LMQQSISHGAQSP 442
R+L YE K Q ++ + F + I K +L S + P
Sbjct: 1037 MCERVLKDF-----YES-GGKQHQSTWNKNTEFQATLNQISKYRLEGAGMGSATRFPPHP 1090
Query: 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL-ATIGDLVKATEFIGQSSGK 501
K+ K+ E+LV HF T D +RV++F+NFR SV +I+ L + +KA FIGQ+ GK
Sbjct: 1091 KMEKLNEILVGHFDTPDANETRVMVFTNFRESVDEIVAHLNSNESGKIKAHRFIGQAGGK 1150
Query: 502 AS-KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
KG SQK Q +++F++G +NV+VATSIGEEGLDI E+DL++C+DA +P+RM+QR+
Sbjct: 1151 GGDKGMSQKEQLGAIKRFKSGEFNVLVATSIGEEGLDIGEIDLIVCYDAQKAPVRMLQRV 1210
Query: 561 GRTGRKHDGRI 571
GRTGRK +G++
Sbjct: 1211 GRTGRKREGKV 1221
>gi|66820945|ref|XP_644014.1| hypothetical protein DDB_G0274841 [Dictyostelium discoideum AX4]
gi|60472360|gb|EAL70313.1| hypothetical protein DDB_G0274841 [Dictyostelium discoideum AX4]
Length = 1789
Score = 345 bits (886), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 195/488 (39%), Positives = 282/488 (57%), Gaps = 26/488 (5%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
++YP + +R+YQF ++A NT++ LPTGLGKT IA++++ N++ WFP K+VF
Sbjct: 466 FLYPED-NIREYQFKFIQSAFLENTMICLPTGLGKTFIASILMLNYYHWFPKSKLVFLVH 524
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQI-SPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
++ LV QQIEA H GIP+ +I TG S KR S W +KRVFF TPQ+L DI SG
Sbjct: 525 TKSLVSQQIEAFHRDTGIPKSDSIQFTGDTTSKLKRQSLWNSKRVFFSTPQILANDIGSG 584
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDN 280
C + + C+VIDEAHRA GNY YC AI+ ++ V R+LALTATPGS IQ +I+N
Sbjct: 585 NCDPRSICCIVIDEAHRAQGNYDYCVAIKLILKVNRFFRVLALTATPGSNNAAIQKVINN 644
Query: 281 LYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLL 340
L IS +E R+E D+ Y+H++K +++ + + + I I L +L
Sbjct: 645 LLISNMELRSEDSADIKPYIHSKKTDVLSIALSDDYKSIIKDYEFFIVDKLKVLFEFNIL 704
Query: 341 QNRDYQTLSPVDLLNS-------RDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
T +P + +S +F +P KF + A L TLY LL
Sbjct: 705 N----PTTTPDRVSHSFILEKIKSIQFSNSPVYGSGGNKFKLLRALV-TLQTLYQGYALL 759
Query: 394 SSHGIRPAYEMLE--EKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVL 451
HG+ Y+ + E + F SKNE+ ++ + +++SI +G KL K+ +VL
Sbjct: 760 KVHGLESFYDKISNLEDASSKTIKAF-SKNENWKQFIIKIKKSIDNGLVHDKLIKLNDVL 818
Query: 452 VDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG--------DLVKATEFIGQS-SGKA 502
++HF++ +P+ S+V+IF FR SV++I++ ++ L+K F GQS + K
Sbjct: 819 IEHFQSNNPRSSKVMIFVQFRRSVQEIIDFISNNNNGGGGGGKSLIKVMPFYGQSATDKG 878
Query: 503 SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
KG +K QQA+L F G NV+V+T IGEEGLDI EVDLV+C+D S L+ QR GR
Sbjct: 879 VKGIHKKEQQAILNSFVNGDINVLVSTCIGEEGLDIGEVDLVVCYDVQQSSLKNTQRTGR 938
Query: 563 TGRKHDGR 570
TGRK DGR
Sbjct: 939 TGRKRDGR 946
>gi|294656897|ref|XP_002770326.1| DEHA2D16896p [Debaryomyces hansenii CBS767]
gi|218511696|sp|Q6BRF0.2|MPH1_DEBHA RecName: Full=ATP-dependent DNA helicase MPH1
gi|199431824|emb|CAR65680.1| DEHA2D16896p [Debaryomyces hansenii CBS767]
Length = 1105
Score = 345 bits (885), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 202/545 (37%), Positives = 297/545 (54%), Gaps = 65/545 (11%)
Query: 90 CHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR 149
H ++ E ++IYP N VRDYQF I + A + N LVALPTGLGKT IA+ V+ NF R
Sbjct: 67 THHALNYENLSSYIYPTNFEVRDYQFNIVQRAFYDNLLVALPTGLGKTFIASTVMLNFTR 126
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
WFP GKI+F AP++PLV QQI+AC I GIP + + S RA W +K VFF T
Sbjct: 127 WFPRGKIIFMAPTKPLVAQQIKACCGITGIPTSEVAILLDK-SRRNRADIWDSKTVFFTT 185
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQV+E D+ +G K +V LVIDEAH++ GNYAY ++ + + RILALTATP S
Sbjct: 186 PQVVENDLTAGIIDPKEVVLLVIDEAHKSKGNYAYNNVVKFITRFNISFRILALTATPAS 245
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
+ +Q IIDNL IS +E R E D++ Y+ +KIE + V E E+ + + I+P
Sbjct: 246 DVEGVQEIIDNLSISKVEVRTEQSIDITKYMKQKKIERVTVSPSVEICELVDMLCTAIQP 305
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYF--GALITL 386
S + + D ++ ++++ + + P +P+ +K+ + YF L +
Sbjct: 306 VLSMANERRIYDMSDPSKINAFQVIDASQRLLKN--PTIPEGLKW---QNYFILQILNVV 360
Query: 387 YHIRRLLSSHGIRPAYEMLEEKLKQGS--FARFMSKNEDIRK------VKLLMQQSISHG 438
R L+ +GI+ Y ++K K+ + F S N+ + +KL++ +
Sbjct: 361 GQALRRLNIYGIKSFYNYFDQKHKEFTIKFKNKKSNNQTAARFYFHDNIKLILDKCKELI 420
Query: 439 AQS-----PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
A PKL ++ L + FK + SRVIIF+ FR S DI++++ IG ++
Sbjct: 421 ADDNFLGHPKLEILINELDEFFKENEANDSRVIIFTEFRESALDIVSSIERIGSNLRPHI 480
Query: 494 FIGQSSGKAS-------------------------------------------KGQSQKV 510
FIGQS K KG +QK+
Sbjct: 481 FIGQSKEKEKFDEEAYLSKGKKGRTKGKATKGKQNSETPERSTSRTSSEDAQIKGMNQKL 540
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
Q+ +++KF+ G YN++VATSIGEEGLDI EVDL++C+D+ SP++ IQRMGRTGRK DG+
Sbjct: 541 QKDLIKKFKKGEYNILVATSIGEEGLDIGEVDLIVCYDSTSSPIKNIQRMGRTGRKRDGK 600
Query: 571 IPHIF 575
+ +F
Sbjct: 601 VLLLF 605
>gi|149051314|gb|EDM03487.1| rCG61774 [Rattus norvegicus]
Length = 647
Score = 345 bits (884), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 179/448 (39%), Positives = 260/448 (58%), Gaps = 34/448 (7%)
Query: 144 IYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203
+YNF+RWFP GK+VF AP++PLV QQ+EAC +++GIPQ +MTG R W ++
Sbjct: 1 MYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVMGIPQSHMAEMTGSTQAVNRKEIWSSR 60
Query: 204 RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILAL 263
RV F+TPQV+ D+ G ++ CLV+DEAH+A GNYAYC +REL+ RILAL
Sbjct: 61 RVLFLTPQVMVNDLTRGAVPAAHVKCLVVDEAHKALGNYAYCQVVRELVKYTNHFRILAL 120
Query: 264 TATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI 323
+ATPGS + +Q +I NL I +E R+E D+ Y H R++E + V +G+E I
Sbjct: 121 SATPGSDIKAVQQVITNLLIEKIELRSEDSPDILPYSHERRVEKLVVPLGEELGAIQKTY 180
Query: 324 WEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGAL 383
+++ + S L +L RD L+ ++ +RD+FR+ P PN+ ++ G +E
Sbjct: 181 VQILETFASSLIKRNILMKRDIPNLTKYQIILARDQFRKNPSPNIVGVQQGIIEGELAIC 240
Query: 384 ITLYHIRRLLSSHGIRPAYEMLEEKL-KQGSFARF---MSKNEDIRKVKLLMQQSISH-- 437
I+LYH LL G+R Y L + R +S+NED K+ +Q +H
Sbjct: 241 ISLYHGYELLQQLGMRSLYFFLSGIMDGTKGMTRVKTELSRNEDFTKLYSHLQSVFAHVR 300
Query: 438 -------------GAQS-------PKLSKMLEVLVDHFKTKDPKH--------SRVIIFS 469
G + PKL K+ EV+++HFK+ + K+ SRV+IFS
Sbjct: 301 DAAAASEASAFQKGNKEKKFVYSHPKLKKLEEVILEHFKSWNAKNTTEKKCQESRVMIFS 360
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
+FR SV +I L+ V+ F+G +SGK +KG +QK Q V+ +FR GGYN +V+T
Sbjct: 361 SFRDSVEEIAEMLSQHQPGVRVMTFVGHASGKNTKGYTQKEQLRVVRQFRDGGYNTLVST 420
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMI 557
+GEEGLDI EVDL+ICFDA SP+R+I
Sbjct: 421 CVGEEGLDIGEVDLIICFDAQKSPIRLI 448
>gi|195058057|ref|XP_001995378.1| GH23128 [Drosophila grimshawi]
gi|193899584|gb|EDV98450.1| GH23128 [Drosophila grimshawi]
Length = 1294
Score = 345 bits (884), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 218/596 (36%), Positives = 313/596 (52%), Gaps = 41/596 (6%)
Query: 69 LGPKPQGTEEFNE---GSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSN 125
L K Q TE NE G + D+ A WIYP N+P+R YQ I + AL+ N
Sbjct: 8 LDAKTQETERKNEEQNGPKLNAEFAG--FDSSAGNNWIYPSNLPMRSYQHNIVQPALYKN 65
Query: 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTI 185
TLV LPTGLGKT IA+VV+YN RWFP K++F AP+RPLV QQI ACH I+ +P +
Sbjct: 66 TLVVLPTGLGKTFIASVVMYNLHRWFPRSKLIFMAPTRPLVAQQIAACHKIMPLPASDVV 125
Query: 186 DMTGQISPTKRASFWKTKRVFFVTPQVLEKDI-----QSGTCLMKY--LVCLVIDEAHRA 238
++TG++ KRA W++KRVFF TPQV++ D+ Q+ Y + LV+DEAHRA
Sbjct: 126 ELTGRLPRAKRAELWRSKRVFFATPQVVQSDMLEQQEQADGFQFPYEDIKLLVVDEAHRA 185
Query: 239 TGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSS 298
G YAY LM+ R+LAL+ATPG + + + NLYIS LE R + DV
Sbjct: 186 KGRYAYTQVTESLMARNPHFRMLALSATPGRTMEDVAAVCRNLYISHLEVRCDDSIDVRP 245
Query: 299 YVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRD 358
YVH+R ++ I V + E R+ ++I PY +L A +L+ + +S +LL +
Sbjct: 246 YVHHRSLDTIVVPLADRIKEPRERLLQIIDPYLRQLIAADVLKGARGK-ISRNNLLYDQA 304
Query: 359 KF-RQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLE--EKLKQGSFA 415
+F +A + + E+ F I+LY+ LL HG+R E +K +
Sbjct: 305 RFMERAATESRRHPEHSEIVGNFAMCISLYYALELLERHGLRVFVNNFEADDKGHEKLVL 364
Query: 416 RFMSKNEDIRKVKL-LMQQSISHGAQS-----------------PKLSKMLEVLVDHFKT 457
R + + + +V+ L + H + PK + +VL+ HF++
Sbjct: 365 RDAALRDLVEQVRQELGANPLDHSTHTMTNGQVAPMPATLDFGHPKYEQARQVLLQHFES 424
Query: 458 KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSS-GKASKGQSQKVQQAVLE 516
+ SR I+F +R SV I L L++ F+GQSS G +QK Q V+
Sbjct: 425 Q--SESRAIVFCEYRESVMLIQRLLLQHRPLLRPRCFVGQSSNGVGICALTQKEQLQVMG 482
Query: 517 KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS-PLRMIQRMGRTGRKHDGRIPHIF 575
FR G NV+VATSI EEGLD+ EVDL++CFD + S P R +QR+GRTGRK G + +
Sbjct: 483 DFRGGICNVLVATSIAEEGLDVGEVDLIVCFDISSSNPTRFVQRIGRTGRKKQGAVVMLV 542
Query: 576 KPEVQFVELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPTSDSTW 631
E + +L E SR + + H T+ + K L L+ FHP + +
Sbjct: 543 T-EGREQQLLKEVLASRDQTNRKLH--TSTLIKASLYPHAPRLVPPQFHPRCEQRF 595
>gi|383865132|ref|XP_003708029.1| PREDICTED: uncharacterized protein LOC100883120 [Megachile
rotundata]
Length = 1227
Score = 344 bits (883), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 193/501 (38%), Positives = 278/501 (55%), Gaps = 38/501 (7%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D A KTWIYP N P+RDYQ+ I + L+ NTLV LPTGLGKT I AVV+YNF+RW+P
Sbjct: 18 FDLSAGKTWIYPENYPIRDYQYNIVQACLYKNTLVCLPTGLGKTFIGAVVMYNFWRWYPK 77
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GK+VF AP++PLV QQI AC+N++GIP TI++TG I+ +R W KRV F TPQV
Sbjct: 78 GKVVFLAPTKPLVAQQIFACYNVMGIPSIETIELTGAINQKQREVAWLKKRVVFATPQVF 137
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
D+ + C+VIDEAH+A G +AYC IR L R+LAL+ATPG+K
Sbjct: 138 YNDLYKKIVPADSIKCVVIDEAHKALGKHAYCECIRTLSETNKNFRVLALSATPGNKINN 197
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+ ++ NL I+ +E R+E+ DV Y++ RK+++I V + E + R ++ +
Sbjct: 198 VHEVLQNLLIAHVELRDEASSDVLPYINQRKLDIILVPLNSEITKYKERYIFIMDRHVKI 257
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L +L+ D +S + + +F+Q + +G++ LIT+YH L+
Sbjct: 258 LLHCNVLKG-DTANISKGKIFHLLKEFQQKTNKSG---NYGQIIKTLNILITMYHAYELM 313
Query: 394 SSHGIRPAYEM---------------LEEKLKQ-----GSFARFMSKNEDIRKVKLLMQQ 433
G+R Y+ L+E L G F + +ED + + Q
Sbjct: 314 IRDGLRAFYKFYQTHSDKFWLKDEIQLQELLIDVEQYLGPFPEIKTFHED---DAITISQ 370
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKH--SRVIIFSNFRGSVRDIMNALATIGDLVKA 491
+ +G K K+ E+L+ HF+ + K +R I+F +R V +I L L++
Sbjct: 371 DLVYG--HTKFEKLKELLLHHFENRQEKQDDTRAIVFVEYRDIVSEIYVLLLQCQPLIRP 428
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
F+GQ+ K + E FR NV+V+TSIGEEGLD+ EVDL+ICFD +
Sbjct: 429 QMFVGQAGQKQKQQLKAL------EDFRNNRVNVLVSTSIGEEGLDVGEVDLIICFDVSQ 482
Query: 552 -SPLRMIQRMGRTGRKHDGRI 571
SP R++QRMGRTGRK DG I
Sbjct: 483 HSPTRLVQRMGRTGRKRDGHI 503
>gi|390177791|ref|XP_002137335.2| GA27149 [Drosophila pseudoobscura pseudoobscura]
gi|388859198|gb|EDY67893.2| GA27149 [Drosophila pseudoobscura pseudoobscura]
Length = 1394
Score = 342 bits (878), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 196/525 (37%), Positives = 283/525 (53%), Gaps = 41/525 (7%)
Query: 82 GSSFDESLCHVQ-----IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGK 136
GS DE H D WIYP N+P+R YQ I ++AL+ NTLV LPTGLGK
Sbjct: 28 GSKTDEPAVHAADECHGFDMATGHNWIYPNNLPLRSYQQNIVQSALYKNTLVVLPTGLGK 87
Query: 137 TLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR 196
T IAAVV+YNF+RW+P GKI+F AP+RPLV QQI AC I+ P T+ +TGQ++ KR
Sbjct: 88 TFIAAVVMYNFYRWYPQGKIIFMAPTRPLVAQQIAACQKIMPFPGSDTVQLTGQLARPKR 147
Query: 197 ASFWKTKRVFFVTPQVLEKDI---QSGTCL-MKYLVCLVIDEAHRATGNYAYCTAIRELM 252
A W +KRVFF TPQV+ D+ G + LV+DEAHRA G YA+ +M
Sbjct: 148 AQLWASKRVFFATPQVVHSDMLETDDGAYFPFGAIKLLVVDEAHRAKGRYAFTQVADSMM 207
Query: 253 SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM 312
+ R+LAL+ATPG + + + NLYI+ L+ R ++ DV Y+H R I I V +
Sbjct: 208 AQNPNFRMLALSATPGRTMEDVATVCQNLYIANLQVRWDNSIDVQPYIHRRIIRTIVVPL 267
Query: 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK 372
E R+ ++I PY +L A +L+ +S +LL + F + +
Sbjct: 268 KDRIKETRERLLQIIEPYLRQLIAADVLKGTK-GNISKNNLLYDQKTFNERSAKGQRHPE 326
Query: 373 FGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQ 432
+ F I+LYH L+ HG+R + ++G ++++ D+R L+ Q
Sbjct: 327 HNIIAGNFAVCISLYHSLELMERHGLRVFVNNFDAD-EEGREKFVLARDGDLR--NLVDQ 383
Query: 433 QSISHGAQ------------------------SPKLSKMLEVLVDHFKTKDPKHSRVIIF 468
++ GA K K+ VL++HF + SR I+F
Sbjct: 384 VRLNLGANPLDFTTHTMTNGEVPAMPADLDFGHAKYEKLRLVLLEHFASN--AESRAIVF 441
Query: 469 SNFRGSVRDIMNALATIGDLVKATEFIGQ-SSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
+R SV I L L++A F+GQ S+ AS +QK Q ++ FR+G NV+V
Sbjct: 442 CEYRESVMLIHRLLLQHRPLLRARCFVGQGSTAGASYALTQKQQIQIMADFRSGTSNVLV 501
Query: 528 ATSIGEEGLDIMEVDLVICFD-ANVSPLRMIQRMGRTGRKHDGRI 571
ATSIGEEG+D+ EV++++CFD + +P R +QR+GRTGRK +G +
Sbjct: 502 ATSIGEEGIDVGEVEMIVCFDICSSNPTRFVQRIGRTGRKKNGEV 546
>gi|255729652|ref|XP_002549751.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240132820|gb|EER32377.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 1162
Score = 342 bits (878), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 212/547 (38%), Positives = 292/547 (53%), Gaps = 77/547 (14%)
Query: 90 CHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR 149
H +D E KT+IYP N +RDYQF I + A + N LVALPTGLGKT IA+ V+ NF R
Sbjct: 71 THHVMDFENLKTYIYPTNFEIRDYQFNIVRRAFYDNVLVALPTGLGKTFIASTVMLNFLR 130
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
WFP+ KI+F AP+RPLV QQI+AC +I GIP + + + RA W +++VFF T
Sbjct: 131 WFPNSKIIFMAPTRPLVAQQIKACCSITGIPSSKVAILLDK-TRKNRAEIWDSRQVFFTT 189
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQV+E D+ +GT K + LVIDEAHRA GN+AY ++ L RILALTATP S
Sbjct: 190 PQVVENDLVAGTVDPKSISLLVIDEAHRAKGNFAYNNVVKFLDRFTFSYRILALTATPSS 249
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
+ +Q II+NL IS +E R ES D Y+ + IE + E E + + I P
Sbjct: 250 DVEGVQEIINNLNISKVEVRTESSIDTVKYMKKKIIERKTIPPSPEIEECIDMLATAIEP 309
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPP-PNLPQ-IKFGEVEAYF--GALIT 385
+ GLL D + ++ + R+ P++P+ +K+ YF L
Sbjct: 310 VLKTANERGLL---DLTDPTKINFFQCNELSRKMTANPSIPEGLKWSN---YFILQLLGI 363
Query: 386 LYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK----------NED----------IR 425
+ R L+ +GIR YE EK F F +K N D +
Sbjct: 364 VGQCYRRLNIYGIRYFYEYFHEK-----FTEFKTKWNAKKSTNKLNADFYFSDTITTLLE 418
Query: 426 KV-KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT 484
KV K++ SH PK+ ++ L D F+ S+VIIF+ FRGS +I+ ++
Sbjct: 419 KVPKMIEDCEYSH----PKIEALMNELSDFFEHHQTADSKVIIFTEFRGSALEIVQSIEK 474
Query: 485 IGDLVKATEFIGQS------------------------------SGKAS------KGQSQ 508
GD K FIGQ+ SG+ S G +Q
Sbjct: 475 AGDNRKPHIFIGQAKEKEKFDVENFGKKKSKQKGGKKPKNDERPSGRTSSEAAQISGMNQ 534
Query: 509 KVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD 568
KVQ+ V++KF+ G YN++VATSIGEEGLDI EVDL+IC+D+ SP++ +QRMGRTGRK D
Sbjct: 535 KVQKEVIKKFKNGEYNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNVQRMGRTGRKRD 594
Query: 569 GRIPHIF 575
G++ +F
Sbjct: 595 GKVLLLF 601
>gi|195145936|ref|XP_002013946.1| GL23119 [Drosophila persimilis]
gi|194102889|gb|EDW24932.1| GL23119 [Drosophila persimilis]
Length = 1395
Score = 342 bits (877), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 196/525 (37%), Positives = 284/525 (54%), Gaps = 41/525 (7%)
Query: 82 GSSFDESLCHVQ-----IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGK 136
GS DE H + D WIYP N+P+R YQ I ++AL+ NTLV LPTGLGK
Sbjct: 28 GSKTDEPAVHAEDECHGFDMATGHNWIYPNNLPLRSYQQNIVQSALYKNTLVVLPTGLGK 87
Query: 137 TLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR 196
T IAAVV+YNF+RW+P GKI+F AP+RPLV QQI AC I+ P T+ +TGQ++ KR
Sbjct: 88 TFIAAVVMYNFYRWYPQGKIIFMAPTRPLVAQQIAACQKIMPFPGSDTVQLTGQLARPKR 147
Query: 197 ASFWKTKRVFFVTPQVLEKDI---QSGTCL-MKYLVCLVIDEAHRATGNYAYCTAIRELM 252
A W +KRVFF TPQV+ D+ G + LV+DEAHRA G YA+ +M
Sbjct: 148 AQLWASKRVFFATPQVVHSDMLETDDGAYFPFGAIKLLVVDEAHRAKGRYAFTQVADCMM 207
Query: 253 SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM 312
+ R+LAL+ATPG + + + NLYI+ L+ R ++ DV Y+H R I I V +
Sbjct: 208 AHNPNFRMLALSATPGRTMEDVATVCQNLYIANLQVRWDNSIDVQPYIHRRIIRTIVVPL 267
Query: 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK 372
E R+ ++I PY +L A +L+ +S +LL + F + +
Sbjct: 268 KDRIKETRERLLQIIEPYLRQLIAADVLKGTK-GNISKNNLLYDQKTFNERSAKGQRHPE 326
Query: 373 FGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQ 432
+ F I+LYH L+ HG+R + ++G ++++ D+R L+ Q
Sbjct: 327 HNIIAGNFSVCISLYHSLELMERHGLRVFVNNFDAD-EEGREKFVLARDGDLR--NLVDQ 383
Query: 433 QSISHGAQ------------------------SPKLSKMLEVLVDHFKTKDPKHSRVIIF 468
++ GA K K+ VL++HF + SR I+F
Sbjct: 384 VRLNLGANPLDFTTHTMTNGEVPAMPADLDFGHAKYEKLRLVLLEHFASN--AESRAIVF 441
Query: 469 SNFRGSVRDIMNALATIGDLVKATEFIGQ-SSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
+R SV I L L++A F+GQ S+ AS +QK Q ++ FR+G NV+V
Sbjct: 442 CEYRESVMLIHRLLLQHRPLLRARCFVGQGSTAGASYALTQKQQIQIMADFRSGTSNVLV 501
Query: 528 ATSIGEEGLDIMEVDLVICFD-ANVSPLRMIQRMGRTGRKHDGRI 571
ATSIGEEG+D+ EV++++CFD + +P R +QR+GRTGRK +G +
Sbjct: 502 ATSIGEEGIDVGEVEMIVCFDICSSNPTRFVQRIGRTGRKKNGEV 546
>gi|157123248|ref|XP_001660079.1| hypothetical protein AaeL_AAEL009460 [Aedes aegypti]
gi|108874431|gb|EAT38656.1| AAEL009460-PA [Aedes aegypti]
Length = 1557
Score = 342 bits (876), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 185/511 (36%), Positives = 278/511 (54%), Gaps = 36/511 (7%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
+ D A +WIYP N PVR YQ++I + ALF NTLV LPTGLGKT IAAVV+YN +RW
Sbjct: 60 YAGFDNNAGNSWIYPTNYPVRKYQYSIVQAALFKNTLVVLPTGLGKTFIAAVVMYNLYRW 119
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
+P GK++F AP+RPLV QQIEAC+ I+GIP+E T +MTG+ R W++KRVF+VTP
Sbjct: 120 YPTGKVIFMAPTRPLVNQQIEACYKIMGIPKEDTAEMTGKQQRKNRTGLWQSKRVFYVTP 179
Query: 211 QVLEKDIQS--GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPG 268
QV+ DI S + + +V+DEAH+A G YAY I+ + S R+LAL+ATPG
Sbjct: 180 QVVLADINSPEQNFPINEVKLVVVDEAHKAKGRYAYTEVIKAIASTNRNFRVLALSATPG 239
Query: 269 SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIR 328
+ + +I NL IS +E R E+ DVS Y + I + + +G I +++
Sbjct: 240 RTLEDVAEVIKNLLISHIEVRWENSIDVSPYTFKKNIRTVVIPLGPNLSRIREHYLQILD 299
Query: 329 PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQI--KFGEVEAYFGALITL 386
PY RL ++ +LS L+ + +FR+ NL Q + + + F +++
Sbjct: 300 PYVRRLLDANVISGH-VGSLSRGWLIMEQKRFRET---NLIQRHPNYTAINSDFITCVSM 355
Query: 387 YHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQS----- 441
YH LL HG+R E++ + F++K+ ++ +++ +
Sbjct: 356 YHALELLVRHGVRAFLNFFEDEHNRTEEKYFVAKDPRLKAFLDELREEYGRNPLAIFGGD 415
Query: 442 --------------------PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNA 481
PK + + L +HF+ S+VIIF +R SV I
Sbjct: 416 PATANGMVGQPKEEVTDFGHPKFAILERNLKEHFQNN--PDSKVIIFCEYRESVAMIQRL 473
Query: 482 LATIGDLVKATEFIGQ-SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIME 540
L L+K +GQ + + +QK Q A ++ FR+G N ++AT + EEG+D+ E
Sbjct: 474 LLQNRPLIKPKCIVGQGGTAGGLRAVTQKEQIAAMKDFRSGACNTLIATCVAEEGIDVGE 533
Query: 541 VDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
VDL++CFD +P R +QR+GRTGR+ GR+
Sbjct: 534 VDLIVCFDIAKNPTRFVQRIGRTGRQRVGRV 564
>gi|195436432|ref|XP_002066172.1| GK22219 [Drosophila willistoni]
gi|194162257|gb|EDW77158.1| GK22219 [Drosophila willistoni]
Length = 1284
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 198/519 (38%), Positives = 284/519 (54%), Gaps = 49/519 (9%)
Query: 90 CHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR 149
CH D K+WIYP N P+R YQ I +TAL+ NTLV LPTGLGKT IAAV++YN++R
Sbjct: 46 CH-GFDVSLGKSWIYPSNFPLRTYQQNIVQTALYKNTLVVLPTGLGKTFIAAVLMYNYYR 104
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
W+P GKI+F AP+RPLV QQI AC I+ + T+++TG++ KR W+TKRVFF T
Sbjct: 105 WYPKGKIIFMAPTRPLVSQQIAACQKIMPFTDQDTVELTGRLPRVKRMELWRTKRVFFAT 164
Query: 210 PQVLEKDI-----QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264
PQV+ D+ QS + + LV+DEAHRA G YAY LM+ Q R+LAL+
Sbjct: 165 PQVVHSDMLDQADQSHSFPFGSVKLLVVDEAHRAKGRYAYTQVTESLMAHNPQFRMLALS 224
Query: 265 ATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
ATPG + + + NLYIS L R E+ DV Y+H R I I V + E R+
Sbjct: 225 ATPGRTMEDVAAVCRNLYISNLAVRWENSIDVQPYIHKRTIRTILVSLKDRIKEPRERLL 284
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKF--------RQAPPPNLPQIKFGEV 376
++I PY +L +L+ ++ +LL + F ++ P NL +
Sbjct: 285 QIIEPYLRQLIQAEVLKGA-RGNITKNNLLYDQKVFIERSSVQGQRHPDHNL-------I 336
Query: 377 EAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQ--- 433
F I+LYH LL HG+R + G ++K+ D+R + +++
Sbjct: 337 AGNFSMCISLYHSLELLERHGLRVFVNNFDVD-ADGRDKYVLTKDADLRNLVDELRKDLG 395
Query: 434 ----SISHGAQS---------------PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS 474
IS A + PK ++ +VLV+HF++ SR I+F +R S
Sbjct: 396 PNPLDISTKAMTNGQVAAMPTALDFGHPKYEEVRKVLVNHFESH--SDSRAIVFCEYRES 453
Query: 475 VRDIMNALATIGDLVKATEFIGQ-SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGE 533
V I L L++ F+GQ S +QK Q A++ FRAG N++VATSIGE
Sbjct: 454 VMLIQRLLLQHRPLLRPRCFVGQGGSNGGFYALAQKQQLAIMADFRAGTSNILVATSIGE 513
Query: 534 EGLDIMEVDLVICFD-ANVSPLRMIQRMGRTGRKHDGRI 571
EG+D+ EV++++CFD + +P R +QR+GRTGRK +G +
Sbjct: 514 EGIDVGEVEMIVCFDICSSNPTRFVQRIGRTGRKKNGEV 552
>gi|210075569|ref|XP_502067.2| YALI0C20933p [Yarrowia lipolytica]
gi|199425312|emb|CAG82387.2| YALI0C20933p [Yarrowia lipolytica CLIB122]
Length = 923
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 211/577 (36%), Positives = 311/577 (53%), Gaps = 47/577 (8%)
Query: 32 QSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLGPK-PQGTE---------EFNE 81
+ +KP T T + S A ++P+ +Q L + P PQ T+ E
Sbjct: 45 EPAKPVTKEQTAVHKPSTAQQQPTPARQQPLGQQPPRQQPSGPQRTQLPRYNADPAESTN 104
Query: 82 GSSFDESL---------CHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPT 132
D +L CH + +++YP N+P R YQ I ++ L NTL +LPT
Sbjct: 105 TPDIDLNLTYPRPMDTACHHETTGLTG-SFLYPSNLPFRTYQHTIIQSCLIENTLCSLPT 163
Query: 133 GLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQIS 192
GLGKT IA+VV+ NF+RWF D KI+F AP++PLV QQI+AC I GIP+ + G +
Sbjct: 164 GLGKTFIASVVMLNFYRWFKDAKIIFMAPTKPLVSQQIDACLRITGIPRHDCSVLMGGVK 223
Query: 193 PTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM 252
RA W KRVFF TPQV+E D+ K + LV+DEAH +G Y+Y +++L+
Sbjct: 224 QADRAHEWANKRVFFATPQVVELDLDGEILDPKTVSLLVVDEAHHTSGKYSYGIVVKKLL 283
Query: 253 SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM 312
R+L LTATP SK + +Q ++ +L IS LE + E D DV Y+HNR+ I V++
Sbjct: 284 DAHQSFRVLGLTATPASKVEGVQSVVQHLLISHLEVKGEQDPDVQQYMHNREEVKINVDL 343
Query: 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLN--SRDKFRQAPPPNLPQ 370
G + E+ +V++P S +++ G+L N D +S + R FR Q
Sbjct: 344 GSDINELLALTGQVLKPTLSMMASKGVLHNTDIAKISLFGVKKEIERYMFRTKYLGPAAQ 403
Query: 371 IKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEML----EEKLKQGSFARFMSKNEDIRK 426
K+ + A + ++ H +LL GI Y+ L +E++ + + + DI
Sbjct: 404 YKYRGIGA---VVASIAHATQLLQHQGITQFYDTLKRRHDEEMARKQPTKSYEQVGDIGS 460
Query: 427 V----KLLMQQS--ISHGAQSPKLSKMLEVLVDHFKTKDPKHSRV---IIFSNFRGSVRD 477
+ K +M++ ++H PKL+ + L + F +K P+ + IIF+ FR +V
Sbjct: 461 ILDATKTIMKKEGYLAH----PKLNYLGSEL-NEFFSKAPEGANTGTCIIFARFRSTVNV 515
Query: 478 IMNALATIGDLVKATEFIGQSSGK---ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEE 534
IM L VK EFIGQ+ + +G +QK QQ V+ KFR G YN +VATSI EE
Sbjct: 516 IMEYLTKFPQ-VKPHEFIGQAPSREEGGGRGMTQKKQQEVISKFRKGVYNTLVATSIAEE 574
Query: 535 GLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
GLDI +VDL+IC+D+N SP+ +QRMGRTGR DGR+
Sbjct: 575 GLDIGQVDLIICYDSNASPITSLQRMGRTGRSRDGRV 611
>gi|123454959|ref|XP_001315228.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
gi|121897898|gb|EAY03005.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
Length = 955
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 196/481 (40%), Positives = 273/481 (56%), Gaps = 36/481 (7%)
Query: 99 AKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVF 158
AK+++Y N RDYQF I+ ++ NTLV +PTGLGKT I+A+VI NF+RWFP GKI+F
Sbjct: 2 AKSFLYITNFSKRDYQFDISLASVKENTLVVIPTGLGKTFISAMVILNFYRWFPKGKILF 61
Query: 159 AAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
A SRPLV QQ+ +I+ I + I++TG + P R W RV F TPQ ++KD++
Sbjct: 62 LATSRPLVTQQMAGIRDILQIDKSEIIELTGSVEPRIRPQLWNKARVIFATPQTVQKDLE 121
Query: 219 SGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHII 278
GTC +V +VIDEAH ATG+++YC + + R++ L+ATPGS + IQ +I
Sbjct: 122 KGTCPASQIVLVVIDEAHHATGDHSYCKVVSGIAEYTKFFRVIGLSATPGSDKDIIQDVI 181
Query: 279 DNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIG 338
L+IS ++YR E + YV R IE + V E+ RI VI+ Y LS
Sbjct: 182 YGLFISKIQYREED--EYKQYVKTRDIETVVVPNAAGVDELIARINTVIKRYLQVLSKDN 239
Query: 339 LLQNRD--YQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSH 396
L+ + D T + LL K R A E + + L R L ++
Sbjct: 240 LVPHTDPTRTTKGQIGLLM---KNRNA----------NEGVGVMISTMKLLKFREYLQNY 286
Query: 397 GIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQ-QSISHGAQS-----PKLSKMLEV 450
I+ + + E + S R V L+ Q I AQ PK+ K+ E+
Sbjct: 287 SIKTFVDAVTEFITDKS----------TRDVDLVSDLQPILSAAQKQRQIDPKMEKLCEI 336
Query: 451 LVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKV 510
+VD + K SR+IIF NFR V+DI+ AL++ +VK +EFIGQS+ +KG +Q
Sbjct: 337 VVDFLEA--TKESRIIIFCNFRNIVQDIVTALSS-KSIVKVSEFIGQSNSGGTKGLNQSR 393
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
Q +++ FR G YNV+VAT+IGEEGLDI EVDL+IC+D S R IQRMGRTGRK DG+
Sbjct: 394 QINLIQSFRRGIYNVLVATAIGEEGLDIGEVDLIICYDVQKSITRTIQRMGRTGRKRDGK 453
Query: 571 I 571
+
Sbjct: 454 V 454
>gi|195569151|ref|XP_002102574.1| GD19428 [Drosophila simulans]
gi|194198501|gb|EDX12077.1| GD19428 [Drosophila simulans]
Length = 1487
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 196/515 (38%), Positives = 284/515 (55%), Gaps = 34/515 (6%)
Query: 85 FDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI 144
FDE+ C D WIYP N+P+R YQ I ++ALF NTLV LPTGLGKT IAAVV+
Sbjct: 35 FDEA-CD-GFDMATGNNWIYPNNLPLRSYQQTIVQSALFKNTLVVLPTGLGKTFIAAVVM 92
Query: 145 YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204
YNF+RW+P GKIVF AP+RPLV QQI A I+ P E T+ +TGQ+ KRA W +KR
Sbjct: 93 YNFYRWYPKGKIVFMAPTRPLVSQQIHASQKIMPFPSEDTVQLTGQLPRPKRAELWASKR 152
Query: 205 VFFVTPQVLEKDI---QSGTCL-MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRI 260
VFF TPQV+ D+ G+ + +V+DEAHRA G YAY LM+ R+
Sbjct: 153 VFFATPQVVHSDMLEADGGSSFPFGSIKLIVVDEAHRAKGRYAYTQVADCLMARNRHFRM 212
Query: 261 LALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEIN 320
LAL+ATPG + + + NLYIS L+ R ++ DV Y+H R I I V + + E
Sbjct: 213 LALSATPGRTMEDVAAVCRNLYISNLQVRWDTSIDVQPYIHRRTIRTIVVSLKERIKEPR 272
Query: 321 NRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYF 380
R+ ++I PY +L+ + + + T+S LL + F + + + F
Sbjct: 273 ERLLQIIEPYLRQLTEAEIFKG-NKGTVSRNSLLFEQKSFVERSAQGQRHPDHNIIMSNF 331
Query: 381 GALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQ------- 433
I++YH L+ HG+R + + G ++++ ++R + ++Q
Sbjct: 332 AMCISMYHSLELMERHGLRVFVNNFDAD-EDGREKFVLARDGNLRNLVEQVRQELGANPL 390
Query: 434 -----SISHGAQSP----------KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDI 478
++++G P K K+ +VLV HF+ SR I+F +R SV I
Sbjct: 391 DYTTHAMTNGEVPPLPSDLDFGHAKYEKLRQVLVQHFQAN--PDSRAIVFCEYRESVMLI 448
Query: 479 MNALATIGDLVKATEFIGQSSG-KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLD 537
L +++ F+GQ S AS +QK Q ++ FR+G NV+VATSIGEEGLD
Sbjct: 449 HRLLLQHRPVLRPRCFVGQGSTVGASYALTQKQQLQIMTDFRSGTSNVLVATSIGEEGLD 508
Query: 538 IMEVDLVICFD-ANVSPLRMIQRMGRTGRKHDGRI 571
+ EV++++CFD + +P R IQR+GRTGRK +G +
Sbjct: 509 VGEVEMIVCFDICSTNPTRFIQRIGRTGRKKNGEV 543
>gi|195380381|ref|XP_002048949.1| GJ21324 [Drosophila virilis]
gi|194143746|gb|EDW60142.1| GJ21324 [Drosophila virilis]
Length = 1366
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 213/604 (35%), Positives = 313/604 (51%), Gaps = 56/604 (9%)
Query: 63 DKFFGNLGPKPQGTEEFN---EGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITK 119
D+ G L P + N E FDES W+YP N+P+R YQ +I +
Sbjct: 18 DEALGKLLDAPTQQQPPNISPEFEGFDES---------CGNNWLYPSNLPLRSYQHSIVQ 68
Query: 120 TALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGI 179
AL+ NTLV LPTGLGKT IA+VV+YN +RW+P K++F AP+RPLV QQI AC I+
Sbjct: 69 AALYRNTLVVLPTGLGKTFIASVVMYNLYRWYPKSKLIFMAPTRPLVSQQIAACQKIMPF 128
Query: 180 PQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKY----LVCLVIDEA 235
P E T+++TG++ KRA W +KRVFF TPQV++ D+ M++ + LV+DEA
Sbjct: 129 PAEDTVELTGRLPRAKRAELWLSKRVFFATPQVVQSDMLDTGDGMQFPYMSIKLLVVDEA 188
Query: 236 HRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQD 295
HRA G YAY +M+ R+LAL+ATPG + + NLYIS LE R E D
Sbjct: 189 HRAKGRYAYTQVTESIMARNPYFRMLALSATPGRTMDDVAAVCRNLYISHLEVRWEDSID 248
Query: 296 VSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLN 355
V YVH R + I V + E R+ E+I PY +L A +L+N +S +LL
Sbjct: 249 VRQYVHKRSMRTIVVPLKDRIKEPRARLLEIIDPYLRQLIAANVLKN-ARGNISRNNLLY 307
Query: 356 SRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFA 415
+ +F++ + + + F I+LYH LL HG+R + +
Sbjct: 308 DQSRFQERVANGERHPEHSLIVSNFAMCISLYHAMELLERHGLRVFVNNFDA--DEHGRD 365
Query: 416 RFMSKNEDIRK-VKLLMQQ-----------SISHGAQS----------PKLSKMLEVLVD 453
+F+ K+ +R+ V+ + QQ ++++G + PK + +VL+
Sbjct: 366 KFVLKDVALRELVEHVRQQLGSNPLDFSTHAMTNGQVAPLPATLDFGHPKYEQARQVLLQ 425
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASK-GQSQKVQQ 512
HF++ SR I+F +R SV I L LV+ F+GQSSG + +QK Q
Sbjct: 426 HFESH--ADSRAIVFCEYRESVMLIQRLLLQHRPLVRPRCFVGQSSGGSGICALTQKEQL 483
Query: 513 AVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD-ANVSPLRMIQRMGRTGRKHDGRI 571
++ FR G NV+VATSIGEEGLD+ EV+L++CFD + +P R +QR+GRTGR+ G +
Sbjct: 484 QIMSDFRQGITNVLVATSIGEEGLDVGEVELIVCFDICSSNPTRFVQRIGRTGRQKRGDV 543
Query: 572 PHIFKPEVQFVELSIEQYVSRGKKVKDDHA----ITTPIFKEKLTAAETDLIAKYFHPTS 627
V V EQ + + D + + + K L L+ +HP
Sbjct: 544 -------VMLVTEGREQQLLKEMLANKDQTNRKLLQSTLVKSALYQHAPRLVPPQYHPRC 596
Query: 628 DSTW 631
+ +
Sbjct: 597 EQRF 600
>gi|194899456|ref|XP_001979275.1| GG24642 [Drosophila erecta]
gi|190650978|gb|EDV48233.1| GG24642 [Drosophila erecta]
Length = 1450
Score = 340 bits (872), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 195/529 (36%), Positives = 285/529 (53%), Gaps = 43/529 (8%)
Query: 71 PKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVAL 130
P+P+ ++E EG D A WIYP N+P+R YQ I ++ALF NTLV L
Sbjct: 34 PQPELSDEACEG-----------FDMAAGHNWIYPNNLPLRSYQQTIVQSALFKNTLVVL 82
Query: 131 PTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQ 190
PTGLGKT IAAV++YNF+RW+P GKIVF AP+RPLV QQI A I+ P T+ +TGQ
Sbjct: 83 PTGLGKTFIAAVLMYNFYRWYPKGKIVFMAPTRPLVSQQIHASQKIMPFPSADTVQLTGQ 142
Query: 191 ISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKY----LVCLVIDEAHRATGNYAYCT 246
+ KRA W +KRVFF TPQV+ D+ + + + +V+DEAHRA G YAY
Sbjct: 143 LPRPKRAELWDSKRVFFATPQVVHSDMLTADGGSNFPFGSIKLIVVDEAHRAKGRYAYTQ 202
Query: 247 AIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIE 306
LM+ RILAL+ATPG + + + NLYIS L+ R ++ DV Y+H R I
Sbjct: 203 VTDCLMARNRNFRILALSATPGRTMEDVAAVCQNLYISNLQVRWDTSIDVQPYIHRRTIR 262
Query: 307 LIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP 366
I V + + E R+ ++I PY +L + + + +S LL + F +
Sbjct: 263 TIVVSLKERIKEPRERLLQIIEPYLRQLIEYDIFKG-NKGNVSKNSLLFEQKSFIERSAQ 321
Query: 367 NLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRK 426
+ F I++YH L+ HG+R + + G ++++ D+R
Sbjct: 322 GQRHPDHNIITGNFAMCISMYHSLELMERHGLRVFVNNF-DAAENGREKFVLARDGDLRN 380
Query: 427 VKLLMQQ------------SISHGAQSP----------KLSKMLEVLVDHFKTKDPKHSR 464
+ ++Q ++++G P K K+ +VLV HF+ SR
Sbjct: 381 LVEQVRQELGANPLDYTTHAMTNGEVPPVPSDLDFGHAKYEKLRQVLVQHFQAN--ADSR 438
Query: 465 VIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG-KASKGQSQKVQQAVLEKFRAGGY 523
I+F +R SV I L L++ F+GQ S AS +QK Q ++ FR+G
Sbjct: 439 AIVFCEYRESVMLIHRLLLQHRPLLRPRCFVGQGSTVGASYALTQKQQLQIMADFRSGTS 498
Query: 524 NVIVATSIGEEGLDIMEVDLVICFD-ANVSPLRMIQRMGRTGRKHDGRI 571
NV+VATSIGEEG+D+ EV++++CFD + +P R +QR+GRTGRK +G +
Sbjct: 499 NVLVATSIGEEGIDVGEVEMIVCFDICSSNPTRFVQRIGRTGRKKNGEV 547
>gi|116008407|ref|NP_650971.2| CG7922, isoform A [Drosophila melanogaster]
gi|442620307|ref|NP_001262806.1| CG7922, isoform B [Drosophila melanogaster]
gi|113194811|gb|AAF55897.2| CG7922, isoform A [Drosophila melanogaster]
gi|440217713|gb|AGB96186.1| CG7922, isoform B [Drosophila melanogaster]
Length = 1489
Score = 340 bits (872), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 193/506 (38%), Positives = 277/506 (54%), Gaps = 32/506 (6%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D WIYP N+P+R YQ I ++ALF NTLV LPTGLGKT IAAVV+YNF+RW+P
Sbjct: 42 FDMATGHNWIYPNNLPLRSYQQTIVQSALFKNTLVVLPTGLGKTFIAAVVMYNFYRWYPK 101
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GKIVF AP+RPLV QQI A I+ P E T+ +TGQ+ KRA W +KRVFF TPQV+
Sbjct: 102 GKIVFMAPTRPLVSQQIHASQKIMPFPSEDTVQLTGQLPRPKRAELWASKRVFFATPQVV 161
Query: 214 EKDI--QSGTCLMKY--LVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
D+ G C + + +V+DEAHRA G YAY LM+ R+LAL+ATPG
Sbjct: 162 HSDMLEADGECSFPFGSIKLIVVDEAHRAKGRYAYTQVADCLMARNRYFRMLALSATPGR 221
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
+ + + NLYIS L+ R ++ DV Y+H R I I V + + E R+ ++I P
Sbjct: 222 TMEDVAAVCRNLYISNLQVRWDTSIDVQPYIHRRTIRTIVVSLKERIKEPRERLLQIIEP 281
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHI 389
Y +L + + + T+S LL + F + + F I++YH
Sbjct: 282 YLRQLMEAEIFKG-NKGTVSRNSLLFEQKSFVERSAQGQRHPDHNIIMGNFAMCISMYHS 340
Query: 390 RRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQ------------SISH 437
L+ HG+R + G ++++ ++R + ++Q ++++
Sbjct: 341 LDLMERHGLRVFVNNFDAD-DDGREKFVLARDGNLRNLVEQVRQELGANPLDYTTHAMTN 399
Query: 438 GAQSP----------KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD 487
G P K K+ +VLV HF+ SR I+F +R SV I L
Sbjct: 400 GEVPPLPSDLDFGHAKYEKLRQVLVQHFQAN--PDSRAIVFCEYRESVMLIHRLLLQHRP 457
Query: 488 LVKATEFIGQSSG-KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
+++ F+GQ S AS +QK Q ++ FR+G NV+VATSIGEEGLD+ EV++++C
Sbjct: 458 VLRPRCFVGQGSTVGASYALTQKQQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVC 517
Query: 547 FD-ANVSPLRMIQRMGRTGRKHDGRI 571
FD + +P R IQR+GRTGRK +G +
Sbjct: 518 FDICSTNPTRFIQRIGRTGRKKNGEV 543
>gi|328791598|ref|XP_393083.4| PREDICTED: Fanconi anemia group M protein [Apis mellifera]
Length = 1194
Score = 340 bits (872), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 193/506 (38%), Positives = 284/506 (56%), Gaps = 30/506 (5%)
Query: 84 SFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVV 143
SFDE D A KTWIYP N PVRDYQF I + L+ NTLV LPTGLGKT IAAVV
Sbjct: 10 SFDEKT--KGFDLSAGKTWIYPENYPVRDYQFNIVQACLYKNTLVCLPTGLGKTFIAAVV 67
Query: 144 IYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203
+YNF+RW+P GKI+F AP++PLV QQI ACHN +GIP TI++TG I+ KR W K
Sbjct: 68 MYNFWRWYPWGKIIFLAPTKPLVTQQIFACHNTMGIPSAETIELTGAINLKKREVAWSKK 127
Query: 204 RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILAL 263
R+ F TPQV D+ + C+VIDEAH+A G ++YC IR L R+LAL
Sbjct: 128 RIIFATPQVFHNDLNKNIVPSDLIKCIVIDEAHKALGKHSYCECIRILNGKNQNFRVLAL 187
Query: 264 TATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI 323
+ATPG+K + ++ NL I+ +E R+E+ D+ Y++ +K+E+I V + + E +
Sbjct: 188 SATPGNKIDNVHEVLQNLLIAHVELRDETSLDIVPYINKKKVEIILVPLNNKLTEYKEKY 247
Query: 324 WEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGAL 383
++ + L +L+ + +S + + +F++ +G++ L
Sbjct: 248 IFIMDRHVKILLQNNILRGQT-ANISKGRVFHLLKEFQKKTNKTG---NYGQIIKTLNIL 303
Query: 384 ITLYHIRRLLSSHGIRPAYEMLE---EKLKQGSFARFMSKNEDIRK-------VKLLMQQ 433
+T+YH L+ G+R Y+ + +K ++ ED++ K+L ++
Sbjct: 304 MTMYHAYELMIRDGLRAFYKFYQNHSDKFWMNEESQLQILLEDVKTYLGPFPDTKVLCEE 363
Query: 434 SISHGAQS-----PKLSKMLEVLVDHF--KTKDPKHSRVIIFSNFRGSVRDIMNALATIG 486
+I Q+ K K+ E+L+ HF K+ ++R I+F +R V +I L
Sbjct: 364 TIMEIPQNLIFGHTKFDKLKELLICHFKNNEKNENNTRAIVFVEYRDIVSEIYILLLQCQ 423
Query: 487 DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
L++ F+GQ+ K Q LE F+ NV+++TSIGEEGLD+ EVDL+IC
Sbjct: 424 PLIRPQMFVGQAGQKQK------QQIKALENFKNNYVNVLISTSIGEEGLDVGEVDLIIC 477
Query: 547 FDANV-SPLRMIQRMGRTGRKHDGRI 571
FD + SP R++QRMGRTGRK DG I
Sbjct: 478 FDVSQHSPTRLVQRMGRTGRKRDGHI 503
>gi|195498547|ref|XP_002096570.1| GE25739 [Drosophila yakuba]
gi|194182671|gb|EDW96282.1| GE25739 [Drosophila yakuba]
Length = 1495
Score = 339 bits (870), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 196/529 (37%), Positives = 288/529 (54%), Gaps = 43/529 (8%)
Query: 71 PKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVAL 130
P+P+ ++E +G FD + H WIYP N+P+R YQ I ++ALF NTLV L
Sbjct: 34 PRPELSDESCDG--FDVATGH---------NWIYPNNLPLRSYQQTIVQSALFKNTLVVL 82
Query: 131 PTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQ 190
PTGLGKT IAAV+++NF+RW+P GKIVF AP+RPLV QQI A I+ P T+ +TGQ
Sbjct: 83 PTGLGKTFIAAVLMFNFYRWYPKGKIVFMAPTRPLVSQQIHASQKIMPFPSADTVQLTGQ 142
Query: 191 ISPTKRASFWKTKRVFFVTPQVLEKDI----QSGTCLMKYLVCLVIDEAHRATGNYAYCT 246
+ KRA W +KRVFF TPQV+ D+ T + + +V+DEAHRA G YAY
Sbjct: 143 LPRPKRAELWGSKRVFFATPQVVHSDMLETDGGSTFPFESIKLIVVDEAHRAKGRYAYTQ 202
Query: 247 AIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIE 306
+ LM+ R+LAL+ATPG + + + NLYIS L+ R ++ DV Y+H R I
Sbjct: 203 VVDCLMARNRNFRMLALSATPGRTMEDVAAVCQNLYISNLQVRWDTSIDVQPYIHRRTIR 262
Query: 307 LIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP 366
I V + + E R+ ++I PY +L + + + +S LL + F +
Sbjct: 263 TIVVSLKERIKESRERLLQIIEPYLRQLLESDIFKG-NKGNVSKNSLLFEQKSFIERSAQ 321
Query: 367 NLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRK 426
+ F I++YH L+ HG+R + + G ++K+ D+R
Sbjct: 322 GQRHPDHNIIMGNFAMCISMYHSLELMERHGLRVFVNNF-DAAEDGREKFVLAKDSDLRN 380
Query: 427 VKLLMQQ------------SISHGAQSP----------KLSKMLEVLVDHFKTKDPKHSR 464
+ ++Q ++++G P K K+ EVLV HF+ SR
Sbjct: 381 LVEQVRQELGANPLDYTTHAMTNGEVPPLPSDLDFGHAKYEKLREVLVQHFQAN--ADSR 438
Query: 465 VIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG-KASKGQSQKVQQAVLEKFRAGGY 523
I+F +R SV I L +++ F+GQ S AS +QK Q ++ FR+G
Sbjct: 439 AIVFCEYRESVMLIHRLLLQHRPVLRPRCFVGQGSTVGASYALTQKQQLQIMSDFRSGTS 498
Query: 524 NVIVATSIGEEGLDIMEVDLVICFDANVS-PLRMIQRMGRTGRKHDGRI 571
NV+VATSIGEEG+D+ EV++++CFD + S P R +QR+GRTGRK +G +
Sbjct: 499 NVLVATSIGEEGIDVGEVEMIVCFDISSSNPTRFVQRIGRTGRKKNGEV 547
>gi|195344412|ref|XP_002038781.1| GM10427 [Drosophila sechellia]
gi|194133802|gb|EDW55318.1| GM10427 [Drosophila sechellia]
Length = 1593
Score = 339 bits (870), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 197/515 (38%), Positives = 286/515 (55%), Gaps = 34/515 (6%)
Query: 85 FDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI 144
FDE +C D WIYP N+P+R YQ I ++ALF NTLV LPTGLGKT IAAVV+
Sbjct: 35 FDE-VCD-GFDMATGNNWIYPNNLPLRSYQQTIVQSALFKNTLVVLPTGLGKTFIAAVVM 92
Query: 145 YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204
YNF+RW+P GKIVF AP+RPLV QQI A I+ P E T+ +TGQ+ KRA W +KR
Sbjct: 93 YNFYRWYPKGKIVFMAPTRPLVSQQIHASQKIMPFPSEDTVQLTGQLPRPKRAELWASKR 152
Query: 205 VFFVTPQVLEKDI---QSGTCL-MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRI 260
VFF TPQV+ D+ G+ + +V+DEAHRA G YAY LM+ R+
Sbjct: 153 VFFATPQVVHSDMLEADGGSSFPFGSIKLIVVDEAHRAKGRYAYTQVADCLMARNRHFRM 212
Query: 261 LALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEIN 320
LAL+ATPG + + + NLYIS L+ R ++ DV Y+H R I I V + + E
Sbjct: 213 LALSATPGRTMEDVAAVCRNLYISNLQVRWDTSIDVQPYIHRRTIRTIVVSLKERIKEPR 272
Query: 321 NRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYF 380
R+ ++I PY +L+ + + + T+S LL + F + + + F
Sbjct: 273 ERLLQIIEPYLRQLTEAEIFKG-NKGTVSRNSLLFEQKSFVERSAQGQRHPDHNIIMSNF 331
Query: 381 GALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQ------- 433
I++YH L+ HG+R + + G ++++ ++R + ++Q
Sbjct: 332 AMCISMYHSLDLMERHGLRVFVNNFDAD-EDGREKFVLARDGNLRNLVEQVRQELGANPL 390
Query: 434 -----SISHGAQSP----------KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDI 478
++++G P K K+ +VLV HF+ +P SR I+F +R SV I
Sbjct: 391 DYTTHAMTNGEVPPLPSNLDFGHAKYEKLRQVLVQHFQA-NPD-SRAIVFCEYRESVMLI 448
Query: 479 MNALATIGDLVKATEFIGQSSG-KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLD 537
L +++ F+GQ S AS +QK Q ++ FR+G NV+VATSIGEEGLD
Sbjct: 449 HRLLLQHRPVLRPRCFVGQGSTVGASYALTQKQQLQIMTDFRSGTSNVLVATSIGEEGLD 508
Query: 538 IMEVDLVICFD-ANVSPLRMIQRMGRTGRKHDGRI 571
+ EV++++CFD + +P R IQR+GRTGRK +G +
Sbjct: 509 VGEVEMIVCFDICSTNPTRFIQRIGRTGRKKNGEV 543
>gi|380028688|ref|XP_003698023.1| PREDICTED: Fanconi anemia group M protein-like [Apis florea]
Length = 1099
Score = 339 bits (870), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 192/506 (37%), Positives = 280/506 (55%), Gaps = 30/506 (5%)
Query: 84 SFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVV 143
SFDE D A KTWIYP N P+RDYQF I + L+ NTLV LPTGLGKT IAAVV
Sbjct: 10 SFDEKT--KGFDLSAGKTWIYPENYPIRDYQFNIVQACLYRNTLVCLPTGLGKTFIAAVV 67
Query: 144 IYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203
+YNF+RW+P GKI+F AP++PLV QQI ACHN +GIP TI++TG I+ KR W K
Sbjct: 68 MYNFWRWYPWGKIIFLAPTKPLVAQQIFACHNTMGIPSAETIELTGAINLKKREIAWSKK 127
Query: 204 RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILAL 263
R+ F TPQV D+ + C+VIDEAH+A G ++YC IR L R+LAL
Sbjct: 128 RIIFATPQVFHNDLNKNIVPSDLIKCIVIDEAHKALGKHSYCECIRILNEKNQNFRVLAL 187
Query: 264 TATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI 323
+ATPG+K + ++ NL I+ +E R+E+ D+ Y++ +K+E+I V + + E +
Sbjct: 188 SATPGNKIDNVHEVLQNLLIAHVELRDETSLDIIPYINKKKVEIILVPLNDKLTEYKEKY 247
Query: 324 WEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGAL 383
++ + L +L + +S + + +F++ +G++ L
Sbjct: 248 IFIMDRHVKILLQYNILHGQT-ANISKGRVFHLLKEFQKKTNKTG---NYGQIIKTLNIL 303
Query: 384 ITLYHIRRLLSSHGIRPAYEMLE---EKLKQGSFARFMSKNEDIR-------KVKLLMQQ 433
+T+YH L+ G+R Y+ + +K + ED++ K L ++
Sbjct: 304 MTMYHAYELMVRDGLRAFYKFYQNHSDKFWMNEEPQLQILLEDVKAYLGPFPDTKDLCEE 363
Query: 434 SISHGAQS-----PKLSKMLEVLVDHFKTKDPK--HSRVIIFSNFRGSVRDIMNALATIG 486
I Q+ K K+ E+L+ HFK K ++R I+F +R V +I L
Sbjct: 364 IIMEIPQNLIFGHTKFDKLKELLICHFKNNQKKENNTRAIVFVEYRDIVSEIYILLLQCQ 423
Query: 487 DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
L++ F+GQ+ K + LE F+ NV+++TSIGEEGLD+ EVDL+IC
Sbjct: 424 PLIRPQMFVGQAGQKQKQQIKA------LEDFKNNYVNVLISTSIGEEGLDVGEVDLIIC 477
Query: 547 FDANV-SPLRMIQRMGRTGRKHDGRI 571
FD + SP R++QRMGRTGRK DG I
Sbjct: 478 FDVSQHSPTRLVQRMGRTGRKRDGHI 503
>gi|260951197|ref|XP_002619895.1| hypothetical protein CLUG_01054 [Clavispora lusitaniae ATCC 42720]
gi|238847467|gb|EEQ36931.1| hypothetical protein CLUG_01054 [Clavispora lusitaniae ATCC 42720]
Length = 962
Score = 339 bits (869), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 217/603 (35%), Positives = 311/603 (51%), Gaps = 75/603 (12%)
Query: 78 EFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKT 137
E E + + H ++D T+IYP N+ VRDYQ+ I A+F N LVALPTGLGKT
Sbjct: 27 ELMEKKNSQRRITHHEVDESNLATYIYPTNLQVRDYQYNIVYRAIFDNVLVALPTGLGKT 86
Query: 138 LIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRA 197
IA+ V+ NF RWFP KI+F AP++PLV QQI+AC I GI + + + R+
Sbjct: 87 FIASTVMLNFLRWFPRSKIIFMAPTKPLVAQQIKACCGITGISSSQVAILLDK-TRKNRS 145
Query: 198 SFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQ 257
+ W K+VFF TPQV+E D+ G K +V LVIDEAHRA GNYAY ++ L
Sbjct: 146 TIWNEKQVFFTTPQVVENDLTRGIVNPKDVVLLVIDEAHRARGNYAYNNVVKFLNRFNNS 205
Query: 258 LRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAV 317
RILALTATP S +Q IIDNL IS +E R E D+ Y+ + IE I V E V
Sbjct: 206 FRILALTATPASDVDGVQEIIDNLCISKVEVRTERSIDIFKYLKRKVIERITVSPSPEIV 265
Query: 318 EINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGEV 376
+ + I + I P + + + D ++ L+++ K + PN+P+ +K+
Sbjct: 266 DAIDMICQAIEPILETANQRKIYEITDPAKINAFAALDAQQKIIKN--PNIPEGLKWSN- 322
Query: 377 EAYF--GALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQS 434
YF L+ + R L+ +GIR Y +K + S K+ + K S
Sbjct: 323 --YFILQLLVVVGQCFRRLNIYGIRSFYSYFYDKYTEFSTKYNNKKSTNHLAAKFYFHSS 380
Query: 435 IS---HGAQS----------PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNA 481
I H + PKL ++ L F+ + +SRVI+F+ FR S DI+ A
Sbjct: 381 IKGLLHKCEGLVKDPTFLGHPKLEVLISELTSFFENTNNSNSRVIVFTEFRESALDIVRA 440
Query: 482 LATIGDLVKATEFIGQSS-----------------------------------GKASK-- 504
L GD +K FIGQ+ G +S+
Sbjct: 441 LEAKGDHLKPHIFIGQAKEKEKFDEEKFLKKGKKSKGKDKKQNSEQKQMLERPGSSSERA 500
Query: 505 ---GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMG 561
G +QK+Q+ +++ F+ G YN++VATSIGEEGLDI EVDL++C+D+ SP++ +QRMG
Sbjct: 501 QISGMNQKMQKQLIKDFKKGSYNILVATSIGEEGLDIGEVDLIVCYDSTSSPIKNVQRMG 560
Query: 562 RTGRKHDGRIPHIF--KPEVQFVEL-----SIEQYVSRGKKV--KDDHAI----TTPIFK 608
RTGR DG++ +F E +F + I+Q++ G V D + I TP+ +
Sbjct: 561 RTGRNRDGKVLLLFSSNEESKFDKAMGGYEYIQQHIINGNMVTLHDQNRILPPGITPVAE 620
Query: 609 EKL 611
EKL
Sbjct: 621 EKL 623
>gi|350419133|ref|XP_003492081.1| PREDICTED: hypothetical protein LOC100743989 [Bombus impatiens]
Length = 1330
Score = 337 bits (864), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 187/495 (37%), Positives = 278/495 (56%), Gaps = 29/495 (5%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D A KTWIYP N P+RDYQF I + L+ NTLV LPTGLGKT IAAVV+YNF+RW+P
Sbjct: 18 FDLSAGKTWIYPENYPIRDYQFNIVQACLYKNTLVCLPTGLGKTFIAAVVMYNFWRWYPC 77
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GK+VF AP++PLV QQI ACHN +GIP TI++TG ++ +R W KRV F TPQV
Sbjct: 78 GKVVFLAPTKPLVAQQIFACHNTMGIPSIETIELTGAVNHKQREIAWSKKRVIFATPQVF 137
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
D+ + C+VIDEAH+A G ++YC IR L R+LAL+ATPG+K
Sbjct: 138 HNDLDKNVVPSDLVKCVVIDEAHKALGKHSYCECIRILNEKNQTFRVLALSATPGNKIDN 197
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+ ++ NL I+ +E R+E+ D+ Y++ RK+++I V + ++ E R ++ +
Sbjct: 198 VHEVLQNLLIAHVELRDETSLDIIPYINKRKVDIILVPLNKKLAEYKERYIFIMDRHVKI 257
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L +L +S + + ++++ + +G++ L+T+YH L+
Sbjct: 258 LLQHNILHGH-TANISKGRIFHLLKEYQKKTHKSGS---YGQIIKTLNILMTMYHAYELM 313
Query: 394 SSHGIRPAYEMLE---EKLKQGSFARFMSKNEDI-----------RKVKLLMQQSISHGA 439
G+R ++ + +K + + EDI + + + Q++ G
Sbjct: 314 IRDGLRAFHKFYQNHSDKFWMNDEPQLQTLLEDITTYLGPFPDICEEAGMEIPQNLIFG- 372
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHS--RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ 497
K K+ E+L+ HFK + K S R I+F +R V ++ L L++ F+GQ
Sbjct: 373 -HTKFDKLKELLLRHFKRSEEKQSDTRAIVFVEYRDIVSEVYILLLQCRPLIRPQMFVGQ 431
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV-SPLRM 556
+ K + Q LE FR NV+++TSIGEEGLD+ EVDL+ICFD + SP R+
Sbjct: 432 AGQKQKQ------QIKALENFRNNHVNVLISTSIGEEGLDVGEVDLIICFDVSQHSPTRL 485
Query: 557 IQRMGRTGRKHDGRI 571
+QRMGRTGRK DG I
Sbjct: 486 VQRMGRTGRKRDGHI 500
>gi|448087512|ref|XP_004196346.1| Piso0_005803 [Millerozyma farinosa CBS 7064]
gi|359377768|emb|CCE86151.1| Piso0_005803 [Millerozyma farinosa CBS 7064]
Length = 952
Score = 336 bits (862), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 209/542 (38%), Positives = 287/542 (52%), Gaps = 63/542 (11%)
Query: 90 CHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR 149
H +D EA KT+IYP N +RDYQF I + ++NTLVALPTGLGKT IA+ VI NF R
Sbjct: 73 THHILDYEALKTYIYPTNFEIRDYQFNIVQRVFYANTLVALPTGLGKTFIASSVILNFSR 132
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
WFP+ KI+F AP++PLV QQI+AC I G+ + + + +R W VFF T
Sbjct: 133 WFPEAKIIFMAPTKPLVAQQIKACLGITGLSTDKVAILLDKTRRDRR-EIWDEHTVFFTT 191
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQV+E D+ SG K +V LVIDEAHRA GNYAY ++ + + RIL +TATP S
Sbjct: 192 PQVVENDLTSGLADPKSIVLLVIDEAHRAKGNYAYNNVVKFISRFNMSFRILGMTATPAS 251
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
+ +Q II+NL IS LE R E D+ Y+ ++KI I V + + + I P
Sbjct: 252 DVEGVQEIINNLSISKLEVRTEQSLDICKYIKHKKISRISVTNSSLIEQFIDHLCTAIAP 311
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYF--GALITL 386
+ + D ++ +++ R P +P+ +K+ YF L +
Sbjct: 312 ILKLANEKKIYDITDPSKINAYQAIDASQ--RLIKNPTIPEGLKWSN---YFILQILNVV 366
Query: 387 YHIRRLLSSHGIRPAYEMLEEKLKQGS--FARFMSKNEDIRKV-------KLLMQ----Q 433
R LS +G+R Y EK K+ + F S N+ K +LLM+
Sbjct: 367 GQGLRRLSIYGVRSFYNYFSEKHKEFTTKFNNKKSTNQTAAKFYYHDSINQLLMECEDVL 426
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
S + PKL ++E + F + S+VIIF+ FR S DI+N L GD +K
Sbjct: 427 SKDNFIGHPKLEILIEQIKKFFDN-NTTDSKVIIFTEFRESALDIVNLLENSGDNIKPHI 485
Query: 494 FIGQ----------------------SSGKAS------------------KGQSQKVQQA 513
FIGQ SS K S KG +QK+Q+
Sbjct: 486 FIGQAKEREKFDEEKFLSKGRKKAKTSSRKGSSKDDNATKARTSSEDAQLKGMNQKLQKE 545
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH 573
+++KF+ G YNV+VATSIGEEGLDI EVDL+ICFD+ SP++ IQRMGRTGRK DG++
Sbjct: 546 LIKKFKEGVYNVLVATSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGRTGRKRDGKVIL 605
Query: 574 IF 575
+F
Sbjct: 606 LF 607
>gi|344305379|gb|EGW35611.1| hypothetical protein SPAPADRAFT_48591 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1151
Score = 336 bits (862), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 212/592 (35%), Positives = 307/592 (51%), Gaps = 62/592 (10%)
Query: 55 STCKQSTLDKFFGNLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQ 114
S+ +Q TLD GN+ P ++ + + H ID E KT+IYP N +RDYQ
Sbjct: 35 SSKRQRTLD---GNIVPTITSVQQLPKPIPVNIP-SHHPIDYENLKTYIYPTNFQIRDYQ 90
Query: 115 FAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACH 174
+ I + A + N LVALPTGLGKT IA+ V+ NF RWFP KI+F AP+RPLV QQI+AC
Sbjct: 91 YNIVQRAFYDNLLVALPTGLGKTFIASTVMLNFLRWFPQSKIIFMAPTRPLVAQQIKACC 150
Query: 175 NIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDE 234
+I GIP + + + R W T++VFF TPQV+E D+ G K +V LVIDE
Sbjct: 151 SITGIPSSKVAILLDK-TRKNREEIWDTRQVFFTTPQVVENDLARGILNPKSVVLLVIDE 209
Query: 235 AHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQ 294
AHRA GNY+Y ++ L RILALTATP + +Q IIDNL IS +E R E
Sbjct: 210 AHRARGNYSYNNVVKFLSRFNNSFRILALTATPAGDVEGVQDIIDNLKISKVEVRTEHAI 269
Query: 295 DVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLL 354
D++ Y+ ++I V E E+ + I P + G+ D ++ +
Sbjct: 270 DITKYMKRKQIVKRTVNASSEIQELIGLLATAISPVLKSANERGVFDITDPTRINHFQCM 329
Query: 355 NSRDK--FRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQG 412
+ K + P L F ++ G + Y R L+ +G+R Y EK +
Sbjct: 330 EASRKVTMNRTMPSGLKWSNFYMLQ-LLGVVGQCY---RRLNIYGVRSFYTYFNEKYNEF 385
Query: 413 SFARFMSK-NEDIR---KVKLLMQQS----ISHGAQSPKLSKMLEVLVDHFKTKDPKHSR 464
+ S+ N D ++K ++++S G PK+ +++ L D F SR
Sbjct: 386 KGKKSKSQINSDFYFSDEIKQVLKRSDEVLKGKGYSHPKIETLMDELTDFFADGVSSDSR 445
Query: 465 VIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKAS--------------------- 503
VIIF+ +R S +I+ + +K FIGQS K
Sbjct: 446 VIIFTEYRESALEIVQCIERTETNLKPHIFIGQSKEKERFDETKSKTKGKSKKRAHDGDD 505
Query: 504 ---------------KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD 548
KG +QK+Q+ +++KF+AG YN++VATSIGEEGLDI EVDL+IC+D
Sbjct: 506 DVRDSTRTSSEDAQIKGMNQKLQKEIIKKFKAGAYNILVATSIGEEGLDIGEVDLIICYD 565
Query: 549 ANVSPLRMIQRMGRTGRKHDGRIPHIFKP--EVQFVEL-----SIEQYVSRG 593
+ SP++ IQRMGRTGRK DG++ +F E++F + I+Q++ +G
Sbjct: 566 STSSPIKNIQRMGRTGRKRDGKVVLLFSSNEELKFDKAMAGYEYIQQHIQKG 617
>gi|392576198|gb|EIW69329.1| hypothetical protein TREMEDRAFT_30400 [Tremella mesenterica DSM
1558]
Length = 1339
Score = 336 bits (861), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 191/506 (37%), Positives = 292/506 (57%), Gaps = 29/506 (5%)
Query: 101 TWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160
T+IYP N P RDYQF I + N LVALPTGLGKT +A VV+ NF+RWFP GKIVF A
Sbjct: 222 TYIYPTNRPKRDYQFDIVQACFMDNCLVALPTGLGKTFVAGVVMLNFYRWFPTGKIVFLA 281
Query: 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQ-ISPTKRASFWKTKRVFFVTPQVLEKDIQS 219
P++PLV QQIEAC GIP + MTGQ +S +R W+ +RVF+ TPQ L+ D++
Sbjct: 282 PTKPLVNQQIEACQMTCGIPSKDAAVMTGQSVSAKERTRMWEERRVFYCTPQTLDNDLKR 341
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIID 279
G + +V V DEAH+A+G+YAY T + L + R+LALTATPG+ + +Q ++D
Sbjct: 342 GAVDPRDIVLAVFDEAHKASGSYAYTTILAYLTAHHPYFRVLALTATPGADVERVQAVVD 401
Query: 280 NLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGL 339
L+IS +E R ++ Y++ +K E V+M + +R +++PY ++L G+
Sbjct: 402 ALHISRIEIREAEAPEIRKYMNEKKTEKHLVKMTPIIEDFRDRWAALMKPYVTKLIEKGV 461
Query: 340 LQNRDY--QTLSPVDLLNSRDKFRQAPPPNLPQI--KFGEVEAYFGAL-------ITLYH 388
L +RD + L P L R + + L ++E A+ + ++H
Sbjct: 462 LTDRDLDIKRLRPFRLTAKRMEIARNRDSGLKWCYGSLNQLERMARAMGHLLEFSLGMFH 521
Query: 389 IRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQ-QSISHGAQS-----P 442
+ S G + + K G+ + +R V++ + I G ++ P
Sbjct: 522 TVLVELSGGSNAEGKKVGTKGGAGALRNNIEFQRLLRDVEIEINCIRIGKGGRTKADRHP 581
Query: 443 KLSKMLEVLVDHF--KTKDPKH------SRVIIFSNFRGSVRDIMNALATIGDLVKATEF 494
K++K LE+L++HF +D K+ +R ++F +FR V ++++AL +L+KAT+F
Sbjct: 582 KMAKTLELLLEHFTAAAEDAKNHGTANDTRAMVFCSFRECVLEVVDALNQHPELLKATKF 641
Query: 495 IGQSSGKA--SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
+GQS GK KG +QK Q+ + F+ G YN++V+TSIGEEGLDI EVD V+ +D
Sbjct: 642 VGQSQGKQDHDKGFNQKEQKRTIADFKEGKYNILVSTSIGEEGLDIGEVDFVVIYDMPKQ 701
Query: 553 PLRMIQRMGRTGRKHDGRIPHIFKPE 578
++++QR+GRTGRK DGR+ H+ E
Sbjct: 702 SIKLLQRVGRTGRKRDGRV-HVLMSE 726
>gi|353238211|emb|CCA70164.1| related to probable RNA helicase MPH1 [Piriformospora indica DSM
11827]
Length = 1197
Score = 336 bits (861), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 197/519 (37%), Positives = 285/519 (54%), Gaps = 55/519 (10%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H++ D + + WIYP+N R+YQF I K +LF N LVA+PTGLGKT IA V+ N++RW
Sbjct: 199 HLEPDRISMREWIYPLNRDKREYQFNIVKASLFDNCLVAIPTGLGKTFIAGCVMLNYYRW 258
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
FP+GKI+F AP++PLV QQIEA H + GIP I++TGQ R WKTKRVF++TP
Sbjct: 259 FPEGKIIFVAPTKPLVAQQIEASHEVCGIPGTDAIELTGQTPRDVRQVLWKTKRVFYMTP 318
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
Q L D+ + K+++ LV+DEAH+ TG+YAY +R +M+ R+LALTATPG K
Sbjct: 319 QTLVNDLANQLVDPKHIILLVVDEAHKGTGDYAYTQIVRFMMATNPFFRLLALTATPGGK 378
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+ +Q I+D+++IS +E RNE DV Y+H++ I V E ++I + +V+
Sbjct: 379 PEAVQVIVDSMHISHIEIRNEESMDVRQYMHHKTIREHVVVFDGELLKIRELLLKVMDRV 438
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAY-----FGALIT 385
L A G+L D +S ++ K E AY GAL
Sbjct: 439 LGPLRAKGILFYHDPAMVSAFVCQSAMGKLDNR----------SEGWAYKPLSDLGALAR 488
Query: 386 LYHIRRLLSSHGIRPAYEMLEE------KLKQGSFAR------------FMSKNEDIRKV 427
Y L H + AY L++ K K GS + F++ +I +
Sbjct: 489 AYG---YLMEHSVEMAYNSLQDFANGVKKSKPGSKQQNTKPSKVAQDPNFVACINEIERQ 545
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKD------------PKHS--RVIIFSNFRG 473
+ + +H PK+ K+ + + HF + P S ++I++ +FR
Sbjct: 546 RDFKKAFPTH----PKMEKLRTLAIQHFANAEIVEEDKVLPGEQPAKSSTKMIVYCSFRE 601
Query: 474 SVRDIMNALATIGDLVKATEFIGQSSGK-ASKGQSQKVQQAVLEKFRAGGYNVIVATSIG 532
V +I L +++A FIGQ K +KG SQK Q AV++ F AG YNVIV+TSIG
Sbjct: 602 CVDEITAMLNEQQPMIRAHRFIGQGIDKRGAKGVSQKEQLAVIKDFSAGKYNVIVSTSIG 661
Query: 533 EEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
EEGLDI EV+ ++C+DA + +R +QR GRTGRK G +
Sbjct: 662 EEGLDIGEVECIVCYDAQKTAIRSLQRAGRTGRKKAGVV 700
>gi|296811414|ref|XP_002846045.1| helicase C-terminal domain-containing protein [Arthroderma otae CBS
113480]
gi|238843433|gb|EEQ33095.1| helicase C-terminal domain-containing protein [Arthroderma otae CBS
113480]
Length = 1092
Score = 335 bits (860), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 198/495 (40%), Positives = 275/495 (55%), Gaps = 73/495 (14%)
Query: 83 SSFDESLCHVQIDAEAAKTWIYPVNV-PVRDYQFAITKTALFSNTLVALPTGLGKTLIAA 141
+S +E+ H ++ EA TWI+P+N+ RDYQ+ I++ LF N LVALPTGLGKT IAA
Sbjct: 321 ASQNEAPTHHTLNPEALGTWIFPMNLGKKRDYQYNISQRGLFHNLLVALPTGLGKTFIAA 380
Query: 142 VVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK 201
V+ N+FRW D +IVF AP++PLV QQ++AC NIVGIP+ T +TG + P R W+
Sbjct: 381 TVMLNWFRWTQDAQIVFVAPTKPLVSQQVDACFNIVGIPRSQTTMLTGNVPPGLRGLEWQ 440
Query: 202 TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRIL 261
+KRVFF+TPQ L D++SG K +V LV+DEAHRATG Y Y ++ + RIL
Sbjct: 441 SKRVFFMTPQTLINDLKSGVADPKRIVLLVVDEAHRATGAYVYVEVVKFIQRFNTSFRIL 500
Query: 262 ALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINN 321
ALTATPGS +T+Q +ID L IS +E R E D+
Sbjct: 501 ALTATPGSTVETVQEVIDGLNISRVEIRTEESLDIRD----------------------- 537
Query: 322 RIWEVIRPYTSRLSAIGLLQNRDYQTLSPV--DLLNSRDKFRQAPPPNLPQIKFGEVEAY 379
I+ V+ S AI LL+ Y + P +L++ D P + Q K G+
Sbjct: 538 -IFTVL---ASLAHAIELLK---YHGVGPFYRNLVSFCDG-----PTDGSQGKGGK---- 581
Query: 380 FGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKL---LMQQSIS 436
+ R++L + L K+ F K E +++V L L + S
Sbjct: 582 --------YARQILDDGNFKSMMTTLRSKMADEDFIGH-PKLEYLKRVILNHFLDADANS 632
Query: 437 HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIG 496
HG PK +RV++FS+FR S +I+ L ++ F+G
Sbjct: 633 HGGAPPK-------------------TRVMVFSHFRDSAEEIVRVLKKHAPIILPHVFVG 673
Query: 497 QSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
Q+S K S+G QK Q +++KF+ G YN IVATSIGEEGLDI EVDL+IC+D++ SP+RM
Sbjct: 674 QASAKGSEGMDQKKQLEIIKKFKEGTYNTIVATSIGEEGLDIGEVDLIICYDSSASPIRM 733
Query: 557 IQRMGRTGRKHDGRI 571
+QRMGRTGRK G++
Sbjct: 734 LQRMGRTGRKRTGKV 748
>gi|412991330|emb|CCO16175.1| unnamed protein product [Bathycoccus prasinos]
Length = 1601
Score = 335 bits (860), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 206/561 (36%), Positives = 303/561 (54%), Gaps = 87/561 (15%)
Query: 93 QIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP 152
+ID AA+T+IYP V R+YQ+AI AL +NTLV LPTGLGKTLIAAVV+ N+ RWFP
Sbjct: 217 EIDLAAAQTYIYPAQVNRREYQYAIAANALLNNTLVCLPTGLGKTLIAAVVMLNYKRWFP 276
Query: 153 DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQ-------ISPTKRASFWKTKRV 205
+GK++F AP+RPLV QQ++ACH+I GIP E T+ + G +S ++R WK K+V
Sbjct: 277 NGKVIFVAPTRPLVDQQMQACHDICGIPSEETVVLMGSTKKKGKTVSDSRR-EHWKEKKV 335
Query: 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTA 265
FF TPQV+ DI++G K +VCLV+DEAHRA GNYAY + +L RILALTA
Sbjct: 336 FFCTPQVVSNDIETGDLNAKDVVCLVVDEAHRAVGNYAYTQIVAKLKERGAVFRILALTA 395
Query: 266 TPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE 325
TPG + +++Q+I+ L I+ +E+R+E D DV+ Y + + + + + I + +
Sbjct: 396 TPGKELESVQNIVSALDINRVEFRSELDVDVAKYTFRKDLVVEPISQDDVSAGILTLLKD 455
Query: 326 VIRPYTSRLSAIGLLQNRDYQTLS--PVDLLN----SRDKFRQAPPPNLPQIKFGEVEAY 379
++P+ + + G D PV ++N + +F P + P + +
Sbjct: 456 SMKPHLKQATGFGAFNPVDNNNNHGIPVSMMNGLAYNVKRFLDLPNADPPAKFLLQQMST 515
Query: 380 F---GALIT---------------LYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMS-K 420
F G + T + HI L + G AY+ + L S A+ +S K
Sbjct: 516 FVQRGLIPTRNKDACGHSLRHAQHITHIIDLFTKFGASQAYDFISRNL---SHAKVLSDK 572
Query: 421 NEDIRKVKLLMQQSISHGAQ-SPKLSKMLEVLVDHFKTKDP----KHSRVIIFSNFRGSV 475
+ + ++ L++ S+GA+ SPKL K+++V+ + F +RV+IF ++R +V
Sbjct: 573 HIEFKEACELIRSLASNGAKHSPKLQKLVKVVAEQFSNNSNNSSGNDTRVMIFCSYRDTV 632
Query: 476 RDIMNALATIGDL------VKATEFIGQSSGKAS-------------------------- 503
RDI+ L I VK F+GQ SG+ +
Sbjct: 633 RDIVEQLREIKPRGENACGVKVAPFVGQGSGENARDRRNREKQVLAQQQHKNNNNIKAGG 692
Query: 504 -------------KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
KGQ Q Q+AVLE FR G N +VATSIGEEGLDI VDL++ +D
Sbjct: 693 GEGAADPLIFEKQKGQKQAEQKAVLEDFRNGNLNCLVATSIGEEGLDIPTVDLIVFYDV- 751
Query: 551 VSPLRMIQRMGRTGRKHDGRI 571
V +R +QRMGRTGR +G++
Sbjct: 752 VDVIRTVQRMGRTGRARNGKV 772
>gi|241954988|ref|XP_002420215.1| ATP-dependent RNA helicase, helicase; DEAD box helicase, putative
[Candida dubliniensis CD36]
gi|223643556|emb|CAX42438.1| ATP-dependent RNA helicase, helicase [Candida dubliniensis CD36]
Length = 1132
Score = 333 bits (853), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 208/545 (38%), Positives = 291/545 (53%), Gaps = 71/545 (13%)
Query: 88 SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNF 147
S H +D E KT+IYP N +RDYQ+ I + A + N LVALPTGLGKT IA+ V+ NF
Sbjct: 68 SPTHHAMDFENLKTYIYPTNFEIRDYQYNIVERAFYDNLLVALPTGLGKTFIASTVMLNF 127
Query: 148 FRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFF 207
RWFP KI+F AP+RPLV QQI+AC +I GIP + + + RA W +++VFF
Sbjct: 128 LRWFPISKIIFMAPTRPLVAQQIKACCSIAGIPSSKVAILLDK-TRRNRAEIWNSRQVFF 186
Query: 208 VTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267
TPQV+E D+ SG K + LVIDEAHRA GNY+Y ++ + RILALTATP
Sbjct: 187 TTPQVVENDLASGVVNPKSIALLVIDEAHRAKGNYSYNNVVKFINRFSDSYRILALTATP 246
Query: 268 GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVI 327
S + +Q IIDNL IS +E R E D+ ++ + +E E E + + E I
Sbjct: 247 ASDVEGVQQIIDNLNISKVEVRTEQSIDIVRHMKKKVVERKTCYPSTEIKECIDLLAEGI 306
Query: 328 RPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQ-APPPNLPQ-IKFGEVEAYF--GAL 383
P + GLL D + ++ L + R+ P +P+ +K+ YF L
Sbjct: 307 TPVLQTANERGLL---DLTDATRINFLQCMEISRKIIANPTIPEGLKWSN---YFILQLL 360
Query: 384 ITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK----------NEDIR---KVKLL 430
+ R L+ +GIR EK F F +K N D + L
Sbjct: 361 GMVGQCYRRLNIYGIRSFQSYFNEK-----FLEFKTKWNAKKSTNKLNADFYFSDPITTL 415
Query: 431 MQ------QSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT 484
M+ +S+++G PK+ ++E L D FK + S+VIIF+ FR S +I+ +
Sbjct: 416 MERTEELSKSLTYG--HPKIEALMEELDDFFKNHETAGSKVIIFTEFRESALEIVQCIEK 473
Query: 485 IGDLVKATEFIGQS----------------------------SGKASK------GQSQKV 510
GD K FIGQS S ++S G SQK+
Sbjct: 474 AGDNRKPHIFIGQSKEREKFDVENFGKKKQKGQTKKKKDERPSTRSSSENAQLTGMSQKL 533
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
Q+ +++KF+ G +N++VATSIGEEGLDI EVDL+IC+D+ SP++ IQRMGRTGRK DG+
Sbjct: 534 QKEIIKKFKQGVFNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRTGRKRDGK 593
Query: 571 IPHIF 575
+ +F
Sbjct: 594 VLMLF 598
>gi|68480950|ref|XP_715628.1| hypothetical protein CaO19.10436 [Candida albicans SC5314]
gi|46437260|gb|EAK96610.1| hypothetical protein CaO19.10436 [Candida albicans SC5314]
Length = 1187
Score = 332 bits (850), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 205/543 (37%), Positives = 284/543 (52%), Gaps = 71/543 (13%)
Query: 90 CHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR 149
H +D E KT+IYP N +RDYQ+ I + A + N LVALPTGLGKT IA+ V+ NF R
Sbjct: 117 THHAMDFENLKTYIYPTNFEIRDYQYNIVERAFYDNLLVALPTGLGKTFIASTVMLNFLR 176
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
WFP KI+F AP+RPLV QQI+AC +I GIP + + + RA W +++VFF T
Sbjct: 177 WFPISKIIFMAPTRPLVAQQIKACCSIAGIPSSKVAILLDK-TRRNRAEIWNSRQVFFTT 235
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQV+E D+ SG K + LVIDEAHRA GNY+Y ++ + RILALTATP S
Sbjct: 236 PQVVENDLASGVVNPKSIALLVIDEAHRAKGNYSYNNVVKFINRFSDSYRILALTATPAS 295
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
+ +Q IIDNL IS +E R E D+ ++ + +E E E + E I P
Sbjct: 296 DVEGVQQIIDNLNISKVEVRTEQSIDIVRHMKRKTVERKTCYPSSEITECIELLAEGITP 355
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQ-APPPNLPQ-IKFGEVEAYF--GALIT 385
+ GLL D + ++ L + R+ P +P+ +K+ YF L
Sbjct: 356 VLNTAKERGLL---DLTDPTRINFLQCMEISRKIVANPTIPEGLKWSN---YFILQLLGM 409
Query: 386 LYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK----------NEDIR---KVKLLM- 431
+ R L+ +GIR EK F F +K N D + LM
Sbjct: 410 VGQCYRRLNIYGIRSFQSYFNEK-----FLEFKTKWNAKKSTNKLNADFYFSDPITTLMD 464
Query: 432 -----QQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG 486
+++++G PK+ ++E L D FK + SRVIIF+ FR S +I+ +
Sbjct: 465 RVEELSKTLTYG--HPKIEALMEELDDFFKNHETAGSRVIIFTEFRESALEIVQCIEKAN 522
Query: 487 DLVKATEFIGQSSGKAS----------------------------------KGQSQKVQQ 512
D K FIGQS K G SQK+Q+
Sbjct: 523 DNRKPHIFIGQSKEKEKFDVENFGKKKQKGQTKKKKDERPSTRSSSENAQMTGMSQKLQK 582
Query: 513 AVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIP 572
+++KF+ G +N++VATSIGEEGLDI EVDL+IC+D+ SP++ IQRMGRTGRK DG++
Sbjct: 583 EIIKKFKKGVFNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRTGRKRDGKVL 642
Query: 573 HIF 575
+F
Sbjct: 643 MLF 645
>gi|347963300|ref|XP_310969.5| AGAP000169-PA [Anopheles gambiae str. PEST]
gi|333467265|gb|EAA06209.5| AGAP000169-PA [Anopheles gambiae str. PEST]
Length = 1326
Score = 332 bits (850), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 195/526 (37%), Positives = 278/526 (52%), Gaps = 56/526 (10%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
DA ++WIYPV+VPVR YQ+AIT+ ALF NTLV LPTGLGKT IAAVV+YN +RW+P
Sbjct: 53 FDASTGESWIYPVDVPVRQYQYAITEAALFKNTLVVLPTGLGKTFIAAVVMYNLYRWYPT 112
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GK++F AP+RPLV QQIEAC +VGIP+ T ++TG+ +KRA+ W+++RVFF TPQV+
Sbjct: 113 GKVIFMAPTRPLVAQQIEACARVVGIPRADTAEVTGRQPRSKRATLWRSRRVFFATPQVV 172
Query: 214 EKDIQSGT----------------CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQ 257
D+Q GT + +VIDEAH+A G YAY IR L
Sbjct: 173 LADLQ-GTDPGGGSGEGGGGGGPLFPANQVRLVVIDEAHKAKGRYAYTDVIRLLAETNPC 231
Query: 258 LRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAV 317
R+LAL+ATPG + + ++ NL IS +E R + D+ YV R + I + +G
Sbjct: 232 FRVLALSATPGRTLEDVAEVLKNLLISHIEVRYDCSPDLQPYVFRRDVRTIVIPLGPTIA 291
Query: 318 EINNRIWEVIRPYTSRL---SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFG 374
+ + ++ PY RL + NR L ++L R P+
Sbjct: 292 RLRKELLRLVDPYLQRLLEANVFARYPNRLTHGLLVMELKRYRSGAMHQRHPS-----HA 346
Query: 375 EVEAYFGALITLYHIRRLLSSHGIRPA--YEMLEEKLKQGSFAR---FMSKNEDIR---- 425
+ + F A I +YH LL HGIR Y + G A+ F++K+ I+
Sbjct: 347 TIVSDFYACIGMYHAIELLVKHGIRALLNYLLGSGGGSNGPNAQEKYFIAKDRQIKQFLD 406
Query: 426 KVKLLMQQSISHGAQSPKL--------------------SKMLEVLVDHFKTKDPKHSRV 465
++K Q G +SP ++LE + F + P SR
Sbjct: 407 RLKDQFPQHAQRGQESPAALLNESGALTGNDDADYGHPKYRILEKHLKGFFREHPD-SRA 465
Query: 466 IIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNV 525
I+F FR SV I L+ ++A +GQ S + Q+ Q V+ +FRAG N
Sbjct: 466 IVFCEFRDSVAMIKRLLSDNQPAIRANCIVGQGSANGVRVPQQE-QIDVIRQFRAGTINT 524
Query: 526 IVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
++AT + EEG+D+ EVDL++CFD +P R +QR+GRTGR+ GR+
Sbjct: 525 LIATCVAEEGIDVGEVDLIVCFDIAKNPTRFVQRVGRTGRQRVGRV 570
>gi|448082908|ref|XP_004195254.1| Piso0_005803 [Millerozyma farinosa CBS 7064]
gi|359376676|emb|CCE87258.1| Piso0_005803 [Millerozyma farinosa CBS 7064]
Length = 953
Score = 332 bits (850), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 207/542 (38%), Positives = 288/542 (53%), Gaps = 63/542 (11%)
Query: 90 CHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR 149
H +D EA KT+IYP N +RDYQF I + ++NTLVALPTGLGKT IA+ V+ NF R
Sbjct: 73 THHILDYEALKTYIYPTNFEIRDYQFNIVQRVFYANTLVALPTGLGKTFIASTVMLNFSR 132
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
WFP+ KI+F AP++PLV QQI+AC I G+ + + + +R W VFF T
Sbjct: 133 WFPEAKIIFMAPTKPLVAQQIKACLGITGLSTDKVAILLDKTRRDRR-EIWDEHTVFFTT 191
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQV+E D+ SG K +V LVIDEAHRA GNYAY ++ + RIL +TATP S
Sbjct: 192 PQVVENDLTSGLADPKSIVLLVIDEAHRAKGNYAYNNVVKFINRFNSLFRILGMTATPAS 251
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
+ +Q II+NL IS LE R E D+ Y+ ++KI I V + + + I P
Sbjct: 252 DVEGVQEIINNLSISKLEVRTEQSLDIYKYIKHKKISRITVTNSPLIEQFIDHLCTAIAP 311
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYF--GALITL 386
+ + D ++ +++ + + P +P+ +K+ YF L +
Sbjct: 312 ILKLANERKIYDITDPSKINAYQAIDASQRLIKNPA--IPEGLKWSN---YFILQILNVV 366
Query: 387 YHIRRLLSSHGIRPAYEMLEEKLKQGS--FARFMSKNEDIRKV-------KLLMQ----Q 433
R L+ +GIR Y EK K+ + F S N+ K +LLM+
Sbjct: 367 GQALRRLNIYGIRSFYNYFSEKHKEFTTKFNNKKSTNQTAAKFYYHDSINQLLMECEDVL 426
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
S + PKL ++E + + F + S+VIIF+ FR S DI+N L GD +K
Sbjct: 427 SQENFIGHPKLEIVIEQIKEFFDN-NTTDSKVIIFTEFRESALDIVNLLENSGDNIKPHI 485
Query: 494 FIGQ----------------------SSGKAS------------------KGQSQKVQQA 513
FIGQ SS K S KG +QK+Q+
Sbjct: 486 FIGQAKEREKFDEEKFLSKGRKKAKTSSRKGSSKDENATKARTSSEDAQMKGMNQKLQKE 545
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH 573
+++KF+ G YNV+VATSIGEEGLDI EVDL+ICFD+ SP++ IQRMGRTGRK DG++
Sbjct: 546 LIKKFKEGIYNVLVATSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGRTGRKRDGKVIL 605
Query: 574 IF 575
+F
Sbjct: 606 LF 607
>gi|68481063|ref|XP_715573.1| hypothetical protein CaO19.2919 [Candida albicans SC5314]
gi|74679884|sp|Q5A1A0.1|MPH1_CANAL RecName: Full=ATP-dependent DNA helicase MPH1
gi|46437201|gb|EAK96552.1| hypothetical protein CaO19.2919 [Candida albicans SC5314]
Length = 1187
Score = 332 bits (850), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 205/543 (37%), Positives = 284/543 (52%), Gaps = 71/543 (13%)
Query: 90 CHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR 149
H +D E KT+IYP N +RDYQ+ I + A + N LVALPTGLGKT IA+ V+ NF R
Sbjct: 117 THHAMDFENLKTYIYPTNFEIRDYQYNIVERAFYDNLLVALPTGLGKTFIASTVMLNFLR 176
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
WFP KI+F AP+RPLV QQI+AC +I GIP + + + RA W +++VFF T
Sbjct: 177 WFPISKIIFMAPTRPLVAQQIKACCSIAGIPSSKVAILLDK-TRRNRAEIWNSRQVFFTT 235
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQV+E D+ SG K + LVIDEAHRA GNY+Y ++ + RILALTATP S
Sbjct: 236 PQVVENDLASGVVNPKSIALLVIDEAHRAKGNYSYNNVVKFINRFSDSYRILALTATPAS 295
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
+ +Q IIDNL IS +E R E D+ ++ + +E E E + E I P
Sbjct: 296 DVEGVQQIIDNLNISKVEVRTEQSIDIVRHMKRKTVERKTCYPSSEITECIELLAEGITP 355
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQ-APPPNLPQ-IKFGEVEAYF--GALIT 385
+ GLL D + ++ L + R+ P +P+ +K+ YF L
Sbjct: 356 VLNTAKERGLL---DLTDPTRINFLQCMEISRKIVANPTIPEGLKWSN---YFILQLLGM 409
Query: 386 LYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK----------NEDIR---KVKLLM- 431
+ R L+ +GIR EK F F +K N D + LM
Sbjct: 410 VGQCYRRLNIYGIRSFQSYFNEK-----FLEFKTKWNAKKSTNKLNADFYFSDPITTLMD 464
Query: 432 -----QQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG 486
+++++G PK+ ++E L D FK + SRVIIF+ FR S +I+ +
Sbjct: 465 RVEELSKTLTYG--HPKIEALMEELDDFFKNHETAGSRVIIFTEFRESALEIVQCIEKAN 522
Query: 487 DLVKATEFIGQSSGKAS----------------------------------KGQSQKVQQ 512
D K FIGQS K G SQK+Q+
Sbjct: 523 DNRKPHIFIGQSKEKEKFDVENFGKKKQKGQTKKKKDERPSTRSSSENAQMTGMSQKLQK 582
Query: 513 AVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIP 572
+++KF+ G +N++VATSIGEEGLDI EVDL+IC+D+ SP++ IQRMGRTGRK DG++
Sbjct: 583 EIIKKFKKGVFNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRTGRKRDGKVL 642
Query: 573 HIF 575
+F
Sbjct: 643 MLF 645
>gi|195124341|ref|XP_002006652.1| GI18468 [Drosophila mojavensis]
gi|193911720|gb|EDW10587.1| GI18468 [Drosophila mojavensis]
Length = 1373
Score = 331 bits (848), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 211/595 (35%), Positives = 302/595 (50%), Gaps = 51/595 (8%)
Query: 63 DKFFGNLGPKPQGTEE--FNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKT 120
D+ G L P +E +E FDES A +W+YP N+P+R YQ +I +
Sbjct: 18 DEALGKLLDTPTKSEPKVISECVGFDES---------AGNSWLYPSNLPLRSYQHSIVQA 68
Query: 121 ALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIP 180
AL+ NTLV LPTGLGKT IAAVV+YN RW+P+ K++F AP+RPLV QQI AC I+
Sbjct: 69 ALYRNTLVVLPTGLGKTFIAAVVMYNLHRWYPESKLIFMAPTRPLVAQQIAACQKIMPFC 128
Query: 181 QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKD-IQSGTCL-MKYLV--CLVIDEAH 236
E T+++TG++ KRA W TKRVFF TPQV++ D + +G L Y+ LV+DEAH
Sbjct: 129 PEDTVELTGRLPRAKRAELWATKRVFFATPQVVQSDMLDTGDGLQFPYMSIKLLVVDEAH 188
Query: 237 RATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDV 296
RA G YAY LM+ R+LAL+ATPG + + + NL IS LE R + DV
Sbjct: 189 RAKGRYAYTQVTDSLMARNPYFRMLALSATPGRTMEDVAAVCRNLCISHLEVRWDDSIDV 248
Query: 297 SSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNS 356
YVH R + I V + E + ++I PY +L +L+ +S +LL
Sbjct: 249 RQYVHKRSMRTIVVPLNDRIKEPRAELLQIIDPYLRQLITANVLKGA-RGNISRNNLLFD 307
Query: 357 RDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIR----------------- 399
+ ++++ + + + F I+LYH LL HG+R
Sbjct: 308 QSRYQEHVARGERHPEHSLIVSNFAMCISLYHALELLERHGLRVFVNNFDADENGRDKFV 367
Query: 400 ---PAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFK 456
PA L EK++Q A + + + S PK + +VL+ HF+
Sbjct: 368 LKDPALRELVEKVRQELGANPLEHSTHAMTNGQVAPLPASLDFGHPKYEQARQVLLTHFE 427
Query: 457 TKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG-KASKGQSQKVQQAVL 515
+ SR I+F +R SV I L +++ F+GQSSG +QK Q ++
Sbjct: 428 SH--PDSRAIVFCEYRESVMLIQRLLLQHRPVLRPRCFVGQSSGTNGICALTQKEQLQIM 485
Query: 516 EKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD-ANVSPLRMIQRMGRTGRKHDGRIPHI 574
FR G NV+VATSIGEEGLD+ EV+L++CFD + +P R +QR+GRTGR+ G +
Sbjct: 486 SDFRQGVSNVLVATSIGEEGLDVGEVELIVCFDICSSNPTRFVQRIGRTGRQKKGDV--- 542
Query: 575 FKPEVQFVELSIEQYVSRGKKVKDDHA----ITTPIFKEKLTAAETDLIAKYFHP 625
V V EQ + + D + + + K L L+ FHP
Sbjct: 543 ----VMLVTDGREQQLLKEMLANKDQMNRKLLQSTLVKSALYPHSPRLVPPQFHP 593
>gi|238881270|gb|EEQ44908.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 904
Score = 330 bits (847), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 205/542 (37%), Positives = 284/542 (52%), Gaps = 71/542 (13%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H +D E KT+IYP N +RDYQ+ I + A + N LVALPTGLGKT IA+ V+ NF RW
Sbjct: 118 HHAMDFENLKTYIYPTNFEIRDYQYNIVERAFYDNLLVALPTGLGKTFIASTVMLNFLRW 177
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
FP KI+F AP+RPLV QQI+AC +I GIP + + + RA W +++VFF TP
Sbjct: 178 FPISKIIFMAPTRPLVAQQIKACCSIAGIPSSKVAILLDK-TRRNRAEIWNSRQVFFTTP 236
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
QV+E D+ SG K + LVIDEAHRA GNY+Y ++ + RILALTATP S
Sbjct: 237 QVVENDLASGVVNPKSIALLVIDEAHRAKGNYSYNNVVKFINRFSDSYRILALTATPASD 296
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+ +Q IIDNL IS +E R E D+ ++ + +E E E + E I P
Sbjct: 297 VEGVQQIIDNLNISKVEVRTEQSIDIVRHMKRKTVERKTCYPSSEITECIELLAEGITPV 356
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQ-APPPNLPQ-IKFGEVEAYF--GALITL 386
+ GLL D + ++ L + R+ P +P+ +K+ YF L +
Sbjct: 357 LNTAKERGLL---DLTDPTRINFLQCMEISRKIVANPTIPEGLKWSN---YFILQLLGMV 410
Query: 387 YHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK----------NEDIR---KVKLLM-- 431
R L+ +GIR EK F F +K N D + LM
Sbjct: 411 GQCYRRLNIYGIRSFQNYFNEK-----FLEFKTKWNAKKSTNKLNADFYFSDPITTLMDR 465
Query: 432 ----QQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD 487
+++++G PK+ ++E L D FK + SRVIIF+ FR S +I+ + D
Sbjct: 466 VEELSKTLTYG--HPKIEALMEELDDFFKNHETAGSRVIIFTEFRESALEIVQCIEKAND 523
Query: 488 LVKATEFIGQSSGKAS----------------------------------KGQSQKVQQA 513
K FIGQS K G SQK+Q+
Sbjct: 524 NRKPHIFIGQSKEKEKFDVENFGKKKQKGQTKKKKDERPSTRSSSENAQMTGMSQKLQKE 583
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH 573
+++KF+ G +N++VATSIGEEGLDI EVDL+IC+D+ SP++ IQRMGRTGRK DG++
Sbjct: 584 IIKKFKKGVFNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRTGRKRDGKVLM 643
Query: 574 IF 575
+F
Sbjct: 644 LF 645
>gi|357616345|gb|EHJ70142.1| hypothetical protein KGM_06170 [Danaus plexippus]
Length = 1703
Score = 330 bits (846), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 193/500 (38%), Positives = 276/500 (55%), Gaps = 44/500 (8%)
Query: 95 DAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
D KTWIYP N P+RDYQF I K A+ N LV+LPTGLGKT IAAV++YNF+RW+P G
Sbjct: 71 DKMLGKTWIYPTNYPIRDYQFNIIKAAMVENCLVSLPTGLGKTFIAAVIMYNFYRWYPLG 130
Query: 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLE 214
K++F AP++PLV QQIEAC+NIV +P + TI+MTG + R S W+TKRVFF TPQV+
Sbjct: 131 KVIFMAPTKPLVAQQIEACYNIVAMPPKDTIEMTGHMQVNTRKSHWQTKRVFFATPQVIY 190
Query: 215 KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-RILALTATPGSKQQT 273
DI+SGTC + CLVIDEAH+A GNYAY + I+ L + + R+LAL+ATPG+K +
Sbjct: 191 NDIKSGTCPSDKIKCLVIDEAHKAKGNYAYSSIIKTLTEMGYFIYRVLALSATPGNKVED 250
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+ HI+ +L+IS LE R E+ DV +Y H R I + VE+G E ++ + E++ YT +
Sbjct: 251 VIHIVKHLHISRLELRTENCSDVKAYSHARNINTVVVELGPELTKLREQYVEILDGYTRK 310
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L+ ++QN + + +L + R+ + PQ + + F LITLYH LL
Sbjct: 311 LTKFNIIQNLGNLSKGRIVMLYKEFQNRERGARH-PQHSY--IMRIFTLLITLYHGLELL 367
Query: 394 SSHGIRPAYEMLEEKLKQ------GSFARFMSKNEDIRKVK-LLMQQSI----------- 435
HG R +E ++ F K D + L + +S+
Sbjct: 368 VKHGSRVFLNFFDEHPEKTWVHEDNELTAFFDKLRDKLGLNPLDLDRSVLPDGTVPEVPS 427
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKH--SRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
+ PK SK+ E+++ HF T K ++ I+F +R SV + L +
Sbjct: 428 NLNFGHPKFSKLKEIIMRHFDTAKNKGQVTKAIVFCEYRESVNLVYCLLLQCRPTIVPEM 487
Query: 494 FIGQ-SSGKASKGQ-SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
F+G +SGK K SQK Q V+ FR+G N +V +S C +
Sbjct: 488 FVGHGASGKDGKTVISQKQQLRVMRNFRSGVCNTLVCSS--------------PCNAMDP 533
Query: 552 SPLRMIQRMGRTGRKHDGRI 571
+P R GRTGR+ G++
Sbjct: 534 AP----ARCGRTGRERSGQV 549
>gi|300121739|emb|CBK22314.2| unnamed protein product [Blastocystis hominis]
Length = 754
Score = 330 bits (845), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 200/572 (34%), Positives = 301/572 (52%), Gaps = 86/572 (15%)
Query: 104 YPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163
YP N P+R+YQ+AI TAL NTLV+LPTGLGKT IAAVV+YNF+RWFP GK+VF AP++
Sbjct: 17 YPTNYPIREYQYAIVSTALLRNTLVSLPTGLGKTFIAAVVMYNFYRWFPAGKVVFMAPTK 76
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL 223
PLV QQI AC++IVGIP + ++ G R W TKRVF+ TPQ+L+ D+ +G
Sbjct: 77 PLVTQQIGACYDIVGIPHSESAELLGNRPAEDRRRLWSTKRVFYCTPQILQNDLANGVVD 136
Query: 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYI 283
K + CLV+DE H+A YAY ++ LM + R+L L+ATPG ++IQ +I+NL I
Sbjct: 137 PKLITCLVVDECHKAQKQYAYVVVVQRLMQIHHHFRVLGLSATPGQDIESIQSVINNLDI 196
Query: 284 STLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS-------RLSA 336
+T+ R D DV Y+ E++E E+ V++N R ++I + RL+
Sbjct: 197 NTICLRTREDPDVRKYLK----EVLEEEI---VVKLNARYQKMIDEWMGFVLNPLMRLNN 249
Query: 337 IGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSH 396
+GLL R+ + ++ + LL+ + + + + E L+++ +LS++
Sbjct: 250 LGLLPERNPRKVNKMMLLDLQSRIISGKVSGVSGPRRMEALNDIKLLMSMTQASAVLSTY 309
Query: 397 GIRPAYEMLEEKLKQGSFARFMSKNEDIR-----KVKLLMQQS-------ISHGAQS--- 441
G+ E+ + M + + KV+L+ I G Q
Sbjct: 310 GVGAFVEVWIAQTHHFQTLGVMFQETAVEKPNPAKVQLVTSSKFKEYYNRIFQGVQKMEY 369
Query: 442 --PKLSKMLEVLVDHFKTKDP--KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ 497
PKL ++ E L+DHF+ + +RVI+F+ +R SV++I+N L +++AT F+GQ
Sbjct: 370 VHPKLERLREFLIDHFRRNAAAGRETRVIVFAQYRSSVQEILNFLRG-EKMIRATAFVGQ 428
Query: 498 S--------------------------------------SGKAS------------KGQS 507
G+ S GQS
Sbjct: 429 QKRNTDVAMVGEDGEPTAEHLYPDEIVPNTAHRTISSYFGGRESLPAVTSVPFIQVNGQS 488
Query: 508 QKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH 567
QK QQ +L F+AG +NV+VAT I EEGLDI EVDL++C++ S R++QR GRTGRK
Sbjct: 489 QKQQQEILRDFKAGKFNVLVATCIAEEGLDIGEVDLLVCYEGISSSTRLLQRKGRTGRKR 548
Query: 568 DGRIPHIFK--PEVQFVELSIEQYVSRGKKVK 597
GR+ + E Q S+++Y + K +K
Sbjct: 549 SGRVVMLLTEGAEYQKHRRSLQKYTAITKTLK 580
>gi|194745250|ref|XP_001955101.1| GF18603 [Drosophila ananassae]
gi|190628138|gb|EDV43662.1| GF18603 [Drosophila ananassae]
Length = 1475
Score = 329 bits (844), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 189/511 (36%), Positives = 282/511 (55%), Gaps = 43/511 (8%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D A WIYP N+P+R YQ AI ++AL+ NTLV LPTGLGKT IAAVV+YNF+RW+P
Sbjct: 46 FDLSAGHNWIYPTNMPLRSYQQAIVQSALYKNTLVVLPTGLGKTFIAAVVMYNFYRWYPQ 105
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GKIVF AP+RPLV QQI A I+ T+ +TGQ++ KRA W++KRVFFVTPQV+
Sbjct: 106 GKIVFMAPTRPLVAQQINASQKIMPFAAADTVQLTGQLARPKRAQLWESKRVFFVTPQVV 165
Query: 214 EKDI----QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
D+ T + +V+DEAHRA G YAY +M+ R+LAL+ATPG
Sbjct: 166 HSDMLEAEGGATFPFSSVKLVVVDEAHRAKGRYAYTQVADSMMAHNRNFRMLALSATPGR 225
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
+ + NL+IS L+ R ++ DV Y+H R I I V + E ++ ++I P
Sbjct: 226 TMDDVATVCQNLFISNLQVRWDTSIDVQPYIHRRTIRTIVVSIKDRIKEPREQLLQIIEP 285
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKF------RQAPPPNLPQIKFGEVEAYFGAL 383
Y +L +++ + ++S LL + F + P N+ + F
Sbjct: 286 YLRQLIEADIIKG-NKGSISKNSLLYEQKLFIDRSTQNRHPEHNI-------IMGNFSMC 337
Query: 384 ITLYHIRRLLSSHGIR---PAYEMLEEKLKQGSFARFMSKNEDIRKVKLLM--------Q 432
I+LYH L+ HG+R ++ E+ ++ AR + + +V+ +
Sbjct: 338 ISLYHSLELMERHGLRVFVNNFDADEDGREKFVLARDRQLRDLVEQVRQELGANPLNYTT 397
Query: 433 QSISHGAQSP----------KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL 482
++++G P K K+ +VL+ HF++ SR I+F +R SV I L
Sbjct: 398 NAMTNGEVPPLPADLDFGHAKYEKLRQVLLQHFESH--SDSRAIVFCEYRESVMLIQRLL 455
Query: 483 ATIGDLVKATEFIGQSSG-KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
L++ F+GQ + AS +QK Q ++ FR+G NV+VATSIGEEG+D+ EV
Sbjct: 456 LQHRPLLRPRCFVGQGATVGASYALTQKQQLQIMADFRSGTSNVLVATSIGEEGIDVGEV 515
Query: 542 DLVICFD-ANVSPLRMIQRMGRTGRKHDGRI 571
++++CFD + +P R +QR+GRTGRK +G +
Sbjct: 516 EMIVCFDICSSNPTRFVQRIGRTGRKKNGEV 546
>gi|321265233|ref|XP_003197333.1| member of the DEAH family of helicases; Mph1p [Cryptococcus gattii
WM276]
gi|317463812|gb|ADV25546.1| Member of the DEAH family of helicases, putative; Mph1p
[Cryptococcus gattii WM276]
Length = 1517
Score = 328 bits (842), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 189/512 (36%), Positives = 291/512 (56%), Gaps = 47/512 (9%)
Query: 101 TWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160
T+IYP N P RDYQF I + NTLVALPTGLGKT +A VV+ NF+RWFP GKIVF A
Sbjct: 274 TYIYPTNHPKRDYQFEIIRNCFLDNTLVALPTGLGKTFVAGVVMLNFYRWFPTGKIVFLA 333
Query: 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQS 219
P+RPLV QQIEAC GIP MTG+ K R W+ KRVF+ TPQ L+ D+++
Sbjct: 334 PTRPLVAQQIEACQLSCGIPSRDAAVMTGEGGARKGRERLWEEKRVFYCTPQTLDNDLKN 393
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIID 279
G + +V +V+DEAH+ATGNYAY T + L + R+LALTATPG+ + +Q+++D
Sbjct: 394 GAVDPQDIVLVVLDEAHKATGNYAYTTIVAYLTAHHPYFRVLALTATPGADVEKVQNVVD 453
Query: 280 NLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGL 339
L+IS +E R ++ Y++ + IE V M ++ +R+ ++ P+ +L +
Sbjct: 454 ALHISRIEIREAEAPEIRKYMNTKHIEKHVVAMSDVIIDFRDRLSALMVPFIKKLVDKDI 513
Query: 340 LQNRDY--QTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
L RD + L P + + + K G+ A FG L L + R +S H
Sbjct: 514 LTERDLDAKRLRPFRITAKKMELG----------KSGQRWA-FGPLGVLDKMARAMS-HL 561
Query: 398 IRPAYEMLEEKLKQ-----------GSFARFMSKNEDIRKVKLLMQQSISH--------- 437
+ + M L + A ++ N + ++++ + Q +S
Sbjct: 562 LEFSLGMFHSSLDEMVSTSGKSKAGAGGANSIANNFEFQRLQRDVSQELSSIKIGRNGKT 621
Query: 438 GA-QSPKLSKMLEVLVDHFKTKDPK--------HSRVIIFSNFRGSVRDIMNALATIGDL 488
GA + PK+ K LE+++ +F + + ++R ++F + R V ++++ +L
Sbjct: 622 GADRHPKMQKALELMLAYFSQAEEEENTLGQKNNTRAMVFCSLRPCVMELVDMFNEHANL 681
Query: 489 VKATEFIGQSSGK--ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
++AT+F+GQS+GK KG +QK Q+ + +F+AG +N++V+TSIGEEGLDI EVD V+
Sbjct: 682 LRATKFVGQSNGKDERDKGFNQKEQKKTISEFKAGTFNILVSTSIGEEGLDIGEVDFVVL 741
Query: 547 FDANVSPLRMIQRMGRTGRKHDGRIPHIFKPE 578
+D ++++QR+GRTGRK DG I H+ E
Sbjct: 742 YDMPRQSIKLLQRIGRTGRKRDG-IVHVLMSE 772
>gi|58261824|ref|XP_568322.1| hypothetical protein CNM01670 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134118443|ref|XP_772108.1| hypothetical protein CNBM1540 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254715|gb|EAL17461.1| hypothetical protein CNBM1540 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230495|gb|AAW46805.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1528
Score = 328 bits (840), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 190/512 (37%), Positives = 291/512 (56%), Gaps = 47/512 (9%)
Query: 101 TWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160
T+IYP N P RDYQF I + NTLVALPTGLGKT +A VV+ NF+RWFP GKIVF A
Sbjct: 284 TYIYPTNHPKRDYQFEIIRNCFLDNTLVALPTGLGKTFVAGVVMLNFYRWFPTGKIVFLA 343
Query: 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQS 219
P+RPLV QQIEAC GIP MTG+ K R W+ KRVF+ TPQ L+ D+++
Sbjct: 344 PTRPLVAQQIEACQLSCGIPSRDAAIMTGEGGARKGRERLWEEKRVFYCTPQTLDNDLKN 403
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIID 279
G + +V +V+DEAH+ATGNYAY T + + + R+LALTATPG+ + +Q+++D
Sbjct: 404 GAVDPRDIVLVVLDEAHKATGNYAYTTIVAYITAHHPYFRVLALTATPGADVEKVQNVVD 463
Query: 280 NLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGL 339
L+IS +E R ++ Y++ + IE V M V+ +R+ ++ P+ +L +
Sbjct: 464 ALHISRIEIREAEAPEIRKYMNTKHIEKHVVPMSDVIVDFRDRLSALMVPFIKKLVDKDI 523
Query: 340 LQNRDY--QTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
L RD + L P + + + K G+ A FG L L + R +S H
Sbjct: 524 LTERDLDAKRLRPFRITAKKMELG----------KSGQRWA-FGPLGVLDKMARAMS-HL 571
Query: 398 IRPAYEMLEEKLKQ-----------GSFARFMSKNEDIRKVKLLMQQSISH--------- 437
+ + M L + A ++ N + ++++ + Q +S
Sbjct: 572 LEFSLGMFHSSLDEMVSAGGKSKAGAGGANSIANNFEFQRLQRDVSQELSSIKIGRNGKT 631
Query: 438 GA-QSPKLSKMLEVLVDHFKTKDPK--------HSRVIIFSNFRGSVRDIMNALATIGDL 488
GA + PK+ K LE+++ HF + + ++R ++F + R V ++++ +L
Sbjct: 632 GADRHPKMQKALELMLAHFSQAEEEENTLGQKNNTRAMVFCSLRPCVMELVDMFNEHPNL 691
Query: 489 VKATEFIGQSSGK--ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
++AT+F+GQS+GK KG +QK Q+ + +F+AG +N++V+TSIGEEGLDI EVD V+
Sbjct: 692 LRATKFVGQSNGKDERDKGFNQKEQKKTINEFKAGTFNILVSTSIGEEGLDIGEVDFVVL 751
Query: 547 FDANVSPLRMIQRMGRTGRKHDGRIPHIFKPE 578
+D ++++QR+GRTGRK DG I H+ E
Sbjct: 752 YDMPRQSIKLLQRIGRTGRKRDG-IVHVLMSE 782
>gi|284018161|sp|A3GH78.3|MPH1_PICST RecName: Full=ATP-dependent DNA helicase MPH1
Length = 1050
Score = 326 bits (835), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 203/544 (37%), Positives = 286/544 (52%), Gaps = 74/544 (13%)
Query: 90 CHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR 149
H +ID ++YP N VRDYQF I + A + N LVALPTGLGKT IA+ V+ NF R
Sbjct: 68 THHKIDYGNLDKYVYPSNFEVRDYQFNIVQRAFYHNLLVALPTGLGKTFIASTVMLNFLR 127
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
WFP+ K++F AP++PLV QQI+AC +I GIP + + + R W K+VFF T
Sbjct: 128 WFPESKMIFVAPTKPLVAQQIKACCSITGIPSSKVAILLDK-TRKNRGEIWDEKQVFFTT 186
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQV+E D+ SG K + LVIDEAHRA GNYAY ++ + RILALTATP S
Sbjct: 187 PQVVENDLASGLVDPKTIALLVIDEAHRAKGNYAYNNIVKFMDRFTNSYRILALTATPAS 246
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
+Q IIDNL IS +E R+E D+ Y+ ++I + E E + + I P
Sbjct: 247 DVDGVQEIIDNLNISKVEVRSEESIDIIKYMKRKRIIRRNIYQSDEIKECIDLLCTAIAP 306
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQ-APPPNLPQIKFGEVEAYFGALITLYH 388
+ G+L+ D S ++ D R+ P +P+ G + F L L
Sbjct: 307 VLKVANGKGILEITD---PSRINFFQCMDASRKIVANPTIPE---GTKWSNFFTLQLLGV 360
Query: 389 IR---RLLSSHGIRPAYEMLEEKLKQGSFARFMSK----------NEDI---RKVKLLMQ 432
+ R L+ +G+R + EK + FM+K N D +K LM+
Sbjct: 361 VGQCFRRLNVYGLRSFFSYFNEK-----YTEFMAKHSKKKSSNKLNADFYFSEPIKQLMK 415
Query: 433 ---------QSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALA 483
+ SH PK+ M+E L + F + S+VIIF+ FR S +I+ +
Sbjct: 416 RIRTMIDDPKVFSH----PKIEAMMEELDEFFTINNATDSKVIIFTEFRESALEIVRFIE 471
Query: 484 TIGDLVKATEFIGQSS----------GKASKGQ----------------------SQKVQ 511
+G +K FIGQ+ GK SKG+ +QK+Q
Sbjct: 472 KVGKNLKPHIFIGQAKERDKFDESNFGKKSKGKRVGKKQQDDSKSSSENAQINGMNQKLQ 531
Query: 512 QAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ +++ F+ G YN++VATSIGEEGLDI EVDL+IC+D+ SP++ IQRMGRTGRK DG++
Sbjct: 532 KEIIKNFKQGTYNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRTGRKRDGKV 591
Query: 572 PHIF 575
+F
Sbjct: 592 VLLF 595
>gi|308198038|ref|XP_001387028.2| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|149389001|gb|EAZ63005.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 941
Score = 326 bits (835), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 201/542 (37%), Positives = 286/542 (52%), Gaps = 72/542 (13%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H +ID ++YP N VRDYQF I + A + N LVALPTGLGKT IA+ V+ NF RW
Sbjct: 5 HHKIDYGNLDKYVYPSNFEVRDYQFNIVQRAFYHNLLVALPTGLGKTFIASTVMLNFLRW 64
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
FP+ K++F AP++PLV QQI+AC +I GIP + + + R W K+VFF TP
Sbjct: 65 FPESKMIFVAPTKPLVAQQIKACCSITGIPSSKVAILLDK-TRKNRGEIWDEKQVFFTTP 123
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
QV+E D+ SG K + LVIDEAHRA GNYAY ++ + RILALTATP S
Sbjct: 124 QVVENDLASGLVDPKTIALLVIDEAHRAKGNYAYNNIVKFMDRFTNSYRILALTATPASD 183
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+Q IIDNL IS +E R+E D+ Y+ ++I + E E + + I P
Sbjct: 184 VDGVQEIIDNLNISKVEVRSEESIDIIKYMKRKRIIRRNIYQSDEIKECIDLLCTAIAPV 243
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR 390
+ G+L+ D ++ +++ K P +P+ G + F L L +
Sbjct: 244 LKVANGKGILEITDPSRINFFQCMDASRKI--VANPTIPE---GTKWSNFFTLQLLGVVG 298
Query: 391 ---RLLSSHGIRPAYEMLEEKLKQGSFARFMSK----------NEDI---RKVKLLMQ-- 432
R L+ +G+R + EK + FM+K N D +K LM+
Sbjct: 299 QCFRRLNVYGLRSFFSYFNEK-----YTEFMAKHSKKKSSNKLNADFYFSEPIKQLMKRI 353
Query: 433 -------QSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI 485
+ SH PK+ M+E L + F + S+VIIF+ FR S +I+ + +
Sbjct: 354 RTMIDDPKVFSH----PKIEAMMEELDEFFTINNATDSKVIIFTEFRESALEIVRFIEKV 409
Query: 486 GDLVKATEFIGQSS----------GKASKGQ----------------------SQKVQQA 513
G +K FIGQ+ GK SKG+ +QK+Q+
Sbjct: 410 GKNLKPHIFIGQAKERDKFDESNFGKKSKGKRVGKKQQDDSKSSSENAQINGMNQKLQKE 469
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH 573
+++ F+ G YN++VATSIGEEGLDI EVDL+IC+D+ SP++ IQRMGRTGRK DG++
Sbjct: 470 IIKNFKQGTYNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRTGRKRDGKVVL 529
Query: 574 IF 575
+F
Sbjct: 530 LF 531
>gi|123402170|ref|XP_001302001.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
gi|121883246|gb|EAX89071.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
Length = 790
Score = 325 bits (834), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 183/512 (35%), Positives = 282/512 (55%), Gaps = 17/512 (3%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
+V+ D E T++YP +VP RDYQF I++ NTLV LPTG GKT IAAVVI NF+RW
Sbjct: 38 YVEADQEKIYTFLYPCDVPRRDYQFQISQLCFKYNTLVCLPTGSGKTFIAAVVIMNFYRW 97
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
+P+ I+F A +R LV QQI+AC+ IP TI + G R WKT RV + TP
Sbjct: 98 YPNSIIIFCATTRALVEQQIDACNMFTTIPDSDTIALLGTTHSNIRKDLWKTYRVVYATP 157
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
Q ++ DI+ G + ++ DEAH A +AY R + Q RI+ L+ATPG
Sbjct: 158 QTVQNDIKKGRLDPCRISLIIFDEAHHARHRHAYSMITRMVAERNSQFRIIGLSATPGKD 217
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
++IQ ++ NL IS + Y++ +D D+ Y HN IE+I V+ G + + + + I
Sbjct: 218 IESIQSVVYNLMISKIIYKDSNDPDIKQYQHNTDIEIITVKAGGDEDALTKLMDQSIAYI 277
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR 390
+ L G L D LS + + +KF+ P L F + +F L++L ++
Sbjct: 278 ATPLQKAGFLNVSDVHFLSRGAVYANMEKFKSGPRSGL----FFKYMNHFSLLLSLTSMK 333
Query: 391 RLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRK----VKLLMQQSISHGAQSPKLSK 446
L +G P + L++ LK+ + ++ + + + L+ S + PKL K
Sbjct: 334 EKLQKYG--PTF--LDKALKEFDKKKQTAERKSLMSYPPFISLIKMTSNAKNTSHPKLVK 389
Query: 447 MLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQ 506
+ +L D F SR I+F+NFR +D+ + + I + VK + F G++ +G
Sbjct: 390 LTLILEDFFAKN--SESRCIVFTNFRDVAKDLESHIKQIPN-VKCSVFTGKAVTNTDEGL 446
Query: 507 SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
++KVQQA++ FR G N+I+AT + EEGLDI EVDL+IC+D SPLR +QRMGRTGRK
Sbjct: 447 NEKVQQAIVGLFRKGNINLIIATCVAEEGLDIGEVDLIICYDTQSSPLRTVQRMGRTGRK 506
Query: 567 HDGRIPHIFKPEVQFVELSIEQYVSRGKKVKD 598
G + + ++ E ++ + V++ +K+
Sbjct: 507 RAGHVIFLMTEGIE--EKALNRAVNKSNDIKN 536
>gi|323455297|gb|EGB11166.1| hypothetical protein AURANDRAFT_52597, partial [Aureococcus
anophagefferens]
Length = 550
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 190/503 (37%), Positives = 278/503 (55%), Gaps = 46/503 (9%)
Query: 93 QIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP 152
+IDA A TW+YP N PVR YQ +I K L NTLV LPTGLGKTLIAAV++YN+ RWFP
Sbjct: 30 RIDAALASTWLYPTNYPVRAYQESIVKQCLLKNTLVCLPTGLGKTLIAAVLMYNYHRWFP 89
Query: 153 DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQV 212
+G+I+F AP+RPLV QQ+ ACH +VG+P+ T ++ G + +R W +RVF+ TPQ
Sbjct: 90 EGQIIFMAPTRPLVGQQVAACHGVVGLPEGDTAEINGTVDQRRRRQLWAQRRVFYCTPQT 149
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQ 272
++ D+++G +V +V+DEAHRA YAYC +R + R+LAL+ATPGS
Sbjct: 150 VQNDLENGALDCSRVVLVVVDEAHRALKKYAYCGVVRAIAKRQSHFRVLALSATPGSDIA 209
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQ-EAVEINNRIWEVIRPYT 331
+Q +IDNL I+ +E R+E+D +V+ + H R E E+ + ++ + + P
Sbjct: 210 GVQAVIDNLRIAHVEVRSEADAEVAPHTHARLGAAKESEIPNFKGFDLGHFPLTIAGPPL 269
Query: 332 SRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRR 391
RL A LL + D LS + ++ + +F L+ +
Sbjct: 270 GRLKAARLLHSSDLAQLSAFQVFSA---------------ECSHSGLFFDKLLA----HK 310
Query: 392 LLSSHGIRPAY------EMLE---------EKLKQGSFARFMSKNEDIRKVKLLMQQSIS 436
L+++H AY + LE +K AR + R V +L
Sbjct: 311 LVAAHDALKAYGPGGCLDKLEALAACDANSDKPFDKVCARVAAGAPFKRAVDVL-----R 365
Query: 437 HGAQSPKLSKMLEVLVDHF--KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEF 494
++PK +K+ E+LVDHF + + SR ++F+ R SV I +ALA L + F
Sbjct: 366 GAGEAPKTAKLRELLVDHFARSREAGRSSRAMVFTGTRHSVDAIGDALAGEPGL-RVQRF 424
Query: 495 IGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
+GQ G AS G Q Q+A +++F A NV+VAT I EEGLDI VD+ + +D SP+
Sbjct: 425 VGQ--GGAS-GMKQDDQKAAVKRFLADDTNVLVATCIAEEGLDIGAVDMCVFYDQVGSPI 481
Query: 555 RMIQRMGRTGRKHDGRIPHIFKP 577
R++QRMGRT RK GR+ + P
Sbjct: 482 RLVQRMGRTARKRAGRVVLLMGP 504
>gi|301622529|ref|XP_002940588.1| PREDICTED: Fanconi anemia group M protein-like, partial [Xenopus
(Silurana) tropicalis]
Length = 595
Score = 318 bits (814), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 162/392 (41%), Positives = 220/392 (56%), Gaps = 28/392 (7%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
D A WIYP N +RDYQF I+ TAL NTLV LPTGLGKT IAAVV+YNF+RW+P
Sbjct: 199 FDLSAGSVWIYPTNYLIRDYQFNISYTALLQNTLVCLPTGLGKTFIAAVVMYNFYRWYPS 258
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GKIVF AP++PLV QQIEAC ++GIPQ+ +MTG R W+ RVFF+TPQV+
Sbjct: 259 GKIVFMAPTKPLVAQQIEACFRVMGIPQDHMAEMTGSTQAQNRKDMWEKHRVFFLTPQVM 318
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
D+ G C + CLVIDEAH+A GN+AYC +REL + Q RILAL+ATPG ++
Sbjct: 319 VNDLTRGACPASEIKCLVIDEAHKALGNHAYCQVVRELTNYTNQFRILALSATPGGDTKS 378
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
+Q ++ NL IS +E R+E D+ Y H R++E V +G+E + +V+ + R
Sbjct: 379 VQQVVSNLLISQIELRSEDSPDIQPYSHERQLEKFVVPLGEELESVQKTYLQVLETFAGR 438
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L +L RD L+ ++ SRD+FR+ PP N+ + G +E F I+LYH LL
Sbjct: 439 LLKNNVLSRRDIPNLTKYQIILSRDQFRKNPPANIIGAQQGVIEGDFALCISLYHGYELL 498
Query: 394 SSHGIRPAYEMLE--------------EKLKQGSFARFMSKNEDI--------RKVKLLM 431
G R Y L E + G F + E++ LL
Sbjct: 499 LQMGTRSLYSYLHGIMDGSKGMTRARNELSRNGDFMELYQQLENMFSDLNVTEGNGSLLF 558
Query: 432 QQSISHGAQS------PKLSKMLEVLVDHFKT 457
S+ A+ PKL K+ +V++ HFK+
Sbjct: 559 NTSLRADAKKPFVYSHPKLIKLEDVVIQHFKS 590
>gi|354547651|emb|CCE44386.1| hypothetical protein CPAR2_401880 [Candida parapsilosis]
Length = 1048
Score = 315 bits (807), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 191/537 (35%), Positives = 278/537 (51%), Gaps = 58/537 (10%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H ++D +T+IYP N VRDYQ+ I + A + N LVALPTGLGKT IA+ V+ NF RW
Sbjct: 100 HHEMDFGNLQTYIYPTNFEVRDYQYNIVRKAFYDNLLVALPTGLGKTFIASTVMLNFLRW 159
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
FP KI+F AP++PLV QQI+AC +I GI + + + + R W +++VFF TP
Sbjct: 160 FPSSKIIFMAPTKPLVAQQIKACCSITGISSS-KVAILLEKTKKNREEIWNSRQVFFTTP 218
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
QV+E D+ SG K +V LVIDEAHRA GNY+Y + L R LALTATP +
Sbjct: 219 QVVENDLASGVVNPKSIVLLVIDEAHRARGNYSYNNVVNFLRRFNDSFRTLALTATPAAD 278
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+Q +IDNL IS +E R E D+ Y+ +KI ++ E + + I P
Sbjct: 279 VDGVQDVIDNLKISKVEVRTEQSIDIIKYMKRKKICRRTLDTSMEIRNCVALLSKAIAPI 338
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKF--RQAPPPNLPQIKFGEVEAYFGALITLYH 388
+ GL+ + ++ + + + + P L + L T+
Sbjct: 339 LKTANEKGLIDETEPTRINAFKCMEASRRLIANHSIPEGLKWANY----FILQLLGTVGQ 394
Query: 389 IRRLLSSHGIRPAYEMLEEKLKQ------------GSFARFMSKNEDIRKVKLLMQQSIS 436
R L+ +G+ Y K ++ A F +E I+++ + +IS
Sbjct: 395 CYRRLNIYGVNSFYSYFMNKYQEFDTKWNKKKSKNKLNADFYY-SEPIKELIESQENAIS 453
Query: 437 HGAQS-PKLSKMLEVLVDHFKTK-DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEF 494
A S PK+ ++E L D F+ K D SRVIIF+ FR S +I+ ++ G K F
Sbjct: 454 SQAFSHPKIEALMEELEDFFQEKCDDDSSRVIIFTEFRESALEIVKSIEKEGKQFKPHIF 513
Query: 495 IGQSSGKAS------------------------------------KGQSQKVQQAVLEKF 518
IGQ+ K G +QK+Q+ +++KF
Sbjct: 514 IGQAKEKEKFDVENFGQKKGAKKKSKKDVNDERDSLRTSSENAQISGMNQKLQKEIIKKF 573
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
+ G YN++VATSIGEEGLDI EVDL++C+D+ SP++ IQRMGRTGRK DG++ +F
Sbjct: 574 KNGEYNILVATSIGEEGLDIGEVDLIVCYDSTSSPIKNIQRMGRTGRKRDGKVLLLF 630
>gi|26352047|dbj|BAC39660.1| unnamed protein product [Mus musculus]
Length = 433
Score = 315 bits (807), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 154/350 (44%), Positives = 215/350 (61%), Gaps = 4/350 (1%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK 155
A A WIYP N PVRDYQ I+++ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK
Sbjct: 65 AAAGALWIYPTNCPVRDYQLDISRSALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK 124
Query: 156 IVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEK 215
+VF AP++PLV QQ+EAC +++GIPQ +MTG R W ++RV F+TPQV+
Sbjct: 125 VVFMAPTKPLVTQQMEACFHVMGIPQSHMAEMTGSTQAVNRKEIWSSRRVLFLTPQVMVN 184
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
D+ G ++ CLV+DEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q
Sbjct: 185 DLTRGAVPATHVKCLVVDEAHKALGNYAYCQVVRELVKYTTHFRILALSATPGSDIKAVQ 244
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335
+I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 245 QVITNLLIGKIELRSEESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLI 304
Query: 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395
+L RD L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL
Sbjct: 305 HRNVLMKRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFALCISLYHGYELLQQ 364
Query: 396 HGIRPAYEMLE---EKLKQGSFARF-MSKNEDIRKVKLLMQQSISHGAQS 441
G+R Y L + K + AR +S+NED K+ +Q + + + S
Sbjct: 365 MGMRSLYFFLSGIMDGTKGMTRARNELSRNEDFMKLYTHLQSAFAPASTS 414
>gi|123495150|ref|XP_001326674.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
gi|121909592|gb|EAY14451.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
Length = 871
Score = 315 bits (806), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 192/557 (34%), Positives = 298/557 (53%), Gaps = 35/557 (6%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
+V+ D + T++YP +VP R+YQ+ I++ NTLV LPTG GKT IA+VV+ NF+RW
Sbjct: 38 YVEADKDKLMTFLYPCDVPRRNYQYDISQACFKENTLVCLPTGTGKTFIASVVMMNFYRW 97
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
+P I+F A +R LV QQI AC++ IP++ T+ + G S T R W RV + TP
Sbjct: 98 YPSSLIIFCATTRALVEQQISACNSFTTIPEDDTVVLVGTSSTTLRKIVWDDYRVVYATP 157
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
Q ++ +I+ G + ++ DEAH A G +Y R + Q R++ L+ATPGS
Sbjct: 158 QTVQNEIKKGKLDPCKISLIIFDEAHHAHGKQSYGMITRMVAERSSQFRVIGLSATPGSN 217
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
Q IQ II NL IS + Y++++D D++ Y H IE I V G + + + + E I+
Sbjct: 218 IQQIQDIIYNLMISQIIYKDDTDPDIAQYQHQTDIEYITVHAGDDDEAVRHNLDECIQFI 277
Query: 331 TSRL--SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYH 388
S L S + + N DY T V L ++ K PN F + +Y L++L
Sbjct: 278 ASPLQNSNVLSIMNLDYLTRGSVFLSMNKYKETSQGAPN-----FSKNMSYLTILLSLTA 332
Query: 389 IRRLLSSHG---IRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLS 445
++ L +G + A + E K + M+ I L +++ + PKL+
Sbjct: 333 MKEKLLKYGPNFLDKAIKDFENKRNSNERRQLMATPAYI---ALAKSTNLAKSSSHPKLA 389
Query: 446 KMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKG 505
K+ +L D F TK K SR I+F++ R DI + + + V F G+++ ++G
Sbjct: 390 KLHSILSDFFSTK--KDSRCIVFASLREVAADIEKNIKNVPN-VNCHVFTGKAATDDTEG 446
Query: 506 QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
+ +QQ +++ FR G +NVI+AT + EEGLDI EVDL++C+D S LR QR+GRTGR
Sbjct: 447 MTDHMQQTIVDLFRKGTFNVIIATCVAEEGLDIGEVDLIVCYDVQASALRTFQRIGRTGR 506
Query: 566 KHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKD--DHAIT-----------TPIFKE--- 609
K GR+ + V+ E ++++ ++ +VKD +I+ P+ KE
Sbjct: 507 KRAGRVVFLISEGVE--ERALKKALNTKTQVKDLLTKSISRFVLYKPLVPNLPLPKEMQA 564
Query: 610 -KLTAAETDLIAKYFHP 625
KL A+ IAKYF P
Sbjct: 565 IKLMCAKEKGIAKYFAP 581
>gi|156836937|ref|XP_001642507.1| hypothetical protein Kpol_328p1 [Vanderwaltozyma polyspora DSM
70294]
gi|189082207|sp|A7TSV4.1|MPH1_VANPO RecName: Full=ATP-dependent DNA helicase MPH1
gi|156113045|gb|EDO14649.1| hypothetical protein Kpol_328p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 1012
Score = 314 bits (805), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 201/575 (34%), Positives = 292/575 (50%), Gaps = 83/575 (14%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H +D + ++IYP N VR+YQF I + +L+ NTL A+PTG+GKT IA+ V+ NFFRW
Sbjct: 68 HHILDKDNFDSYIYPTNFEVREYQFNIVQKSLYQNTLCAIPTGMGKTFIASTVMLNFFRW 127
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
+GKI+F AP+RPLV QQI+AC I GIP + + + S R W KRVFF TP
Sbjct: 128 SKNGKIIFTAPTRPLVAQQIKACLGITGIPHDQAAILLDK-SRKNREDIWTQKRVFFTTP 186
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
QV+E D++ G K ++CLV DEAHRATG+YAY ++ + RILALTATPG+
Sbjct: 187 QVIENDLKRGVLNPKDIICLVFDEAHRATGSYAYTNVVKFIDRFNSSYRILALTATPGTD 246
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
++Q +++NL IS +E R E D+ Y+ R E IE+ + E I ++ ++P
Sbjct: 247 IASVQEVVNNLNISNIEIRTEESMDIIRYMKKRYKEKIEIGLTTEIEMIIEQLGIAVKPV 306
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR 390
+ +G+ D S ++ + K +Q P I G F L L H+
Sbjct: 307 LQQAVELGIY---DECHPSQINSFVAMQKSQQIIAN--PTIAEGIKWRNFFILQLLNHVG 361
Query: 391 RLLSS---HGIRPAYEMLEEKLKQGSFARFMSKNEDIRK--------VKLLMQQSISHGA 439
++L +GIR Y K + + M K+ + +K+LM+ + +
Sbjct: 362 QMLKRIKIYGIRSFYGYFRNKFSEFTTKYNMGKSTNKIAASFYYHPILKILMKNCDVYTS 421
Query: 440 QSP-----KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG-DLVKATE 493
S KL K++ L D F SRVIIF+ R S +I+ + +G ++
Sbjct: 422 NSSFIGHDKLQKIINELSDFF-LNSRLDSRVIIFTELRESALEIVKTIDNMGSSSIRPHI 480
Query: 494 FIGQSSG------------------------------------KASKGQSQKVQQA---- 513
FIGQ+ G KA + + +KV+++
Sbjct: 481 FIGQARGKENFDDEGFIRKNKPKGRKKADRLKRLEEDKQKQLSKAKQKEQEKVERSSRRT 540
Query: 514 ------------------VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
V+ KF+ G YNV+V TSIGEEGLDI EVD++ICFD SP++
Sbjct: 541 GSSEEAQISGMNQKQQKEVISKFKNGDYNVLVCTSIGEEGLDIGEVDMIICFDTTGSPIK 600
Query: 556 MIQRMGRTGRKHDGRIPHIFKP-EVQFVELSIEQY 589
IQRMGRTGRK DG+I +F E + E ++E Y
Sbjct: 601 NIQRMGRTGRKRDGKILLLFSGNESRKFEKAMEDY 635
>gi|344228143|gb|EGV60029.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 1038
Score = 313 bits (802), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 190/541 (35%), Positives = 287/541 (53%), Gaps = 89/541 (16%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H ++D E K++IYP+N +RDYQF I + ++N LVALPTGLGKT IAA +I N++RW
Sbjct: 114 HHELDYENLKSYIYPINYEIRDYQFNIIEKCFYNNMLVALPTGLGKTFIAATIILNYWRW 173
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
FP+ KI+F AP+RPLV QQI+AC NI+G+ + + + + R W + R+FF TP
Sbjct: 174 FPNSKIIFMAPTRPLVAQQIKACFNIIGLKDQSAVLLDK--TKRNRLEIWNSFRIFFTTP 231
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
QV+E D+ +G K + LV+DEAH+A GNYAY + L RILALTATP S
Sbjct: 232 QVVENDLCNGLVDPKSVSLLVVDEAHKAKGNYAYNNVAKFLDRFNNSYRILALTATPSST 291
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI--WEVIR 328
+ I+ I+ NL I+ +E R E+ D+ Y +++I+ I+V+ V N I
Sbjct: 292 VEGIKEIVGNLTINKIEIRTENSIDIIKYFKHKRIDKIDVDFNDNEVITNCLIHTANAAE 351
Query: 329 PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYH 388
PY + + N R F+ + P +L K E+
Sbjct: 352 PY--------------------IKMANERHLFQSSDPNDLYMFKLLEITK---------- 381
Query: 389 IRRLLS---SHGIRPAYEMLE----------EKLKQGSFARFMSKNEDIR------KVKL 429
R LL+ S G++ L +KLK F F + D R K K+
Sbjct: 382 -RNLLNNNLSEGLKWQNHFLLKLLLFKANCIKKLKIYGFNNFKAYFNDTRTKVLASKNKM 440
Query: 430 LMQ--------QSISHGAQS------PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
+++ + + + +++ PK+ ++E + + FKT + +S+VIIFS R S
Sbjct: 441 MLELFSSAPVKELVGYLSKTQVQFGHPKIEILIEYINNFFKTSEYDNSKVIIFSELRDSA 500
Query: 476 RDIMNALATIGD-LVKATEFIGQ--------------------SSGKASKGQSQKVQQAV 514
+I++ + + + +K FIGQ S KG +QKVQ+ +
Sbjct: 501 LEIVSTIEAMNNPRLKPHIFIGQAPDSNPEVVDKQNGGPKRSSSEDAKLKGMNQKVQKQL 560
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHI 574
++ F+ YN++VATSIGEEGLDI EVDL++C+D + SP++ +QR+GRTGRK DG I +
Sbjct: 561 IKDFKTEKYNILVATSIGEEGLDIGEVDLIVCYDTSASPIKNVQRLGRTGRKRDGNILML 620
Query: 575 F 575
F
Sbjct: 621 F 621
>gi|393226114|gb|EJD33934.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 574
Score = 311 bits (798), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 183/488 (37%), Positives = 272/488 (55%), Gaps = 28/488 (5%)
Query: 93 QIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP 152
Q+D +A+ WI+P+N P R YQF+I + AL NTLVALPTGLGKT IA VV+ N++RWFP
Sbjct: 4 QLDRLSARHWIFPLNRPKRTYQFSIVQAALLKNTLVALPTGLGKTFIAGVVMLNYWRWFP 63
Query: 153 DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQV 212
GKI+F P++PLV QQI ACHN GIP +M G+I KRA W+ KRVF++TPQ
Sbjct: 64 TGKIIFLCPTKPLVAQQIVACHNTCGIPGSDATEMHGEILKVKRAHLWEQKRVFYMTPQT 123
Query: 213 LEKDIQSGTCLMKYLVCLVI--DEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
L+ D+ + ++ +V +VI DEAH+ATG +AY T +R++ RILALTATP S
Sbjct: 124 LKNDLTAEIMDLRDIVLMVIVPDEAHKATGAHAYTTTVRDITEKNPACRILALTATPSSD 183
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+ IQ IID L I +E RNE+ D+S Y+ ++ I + + + + ++
Sbjct: 184 KDKIQPIIDALRIGHIEIRNETSLDISPYIKRKEKREIVIRFPPHLASLRDSLANIM--- 240
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR 390
LS + LL+N + +D L+ R P Q G ++ G+ + R
Sbjct: 241 ---LSMLKLLRNGEIP--GSLDPLHVR--------PFTIQSALGNMKNQPGS--AAWTCR 285
Query: 391 RLLSSHGIRPAYEMLE--EKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQ-SPKLSKM 447
L H + A LE K +K D +K+ G PK+ K+
Sbjct: 286 ILNDLHSLATAMNRLEGFGAYKHQRTLPAYTKTPDYKKLLQDFTNEKKRGTLVHPKMQKL 345
Query: 448 LEVLVDHFKTKDPKHS----RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKAS 503
E+L+D+F S + I+F + R V +I+ L ++ F+GQ +
Sbjct: 346 RELLLDYFGAPVAGSSSATQKAIVFVSLRSCVDEIVEYLTGEEPTIRPARFVGQGTDNKG 405
Query: 504 KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
G+ + Q ++++F++ NV+++TSIGEEGLDI EVDL+IC++ SP+R +QR GRT
Sbjct: 406 -GKGILISQQLIQQFQSSNVNVLISTSIGEEGLDIGEVDLIICYETPSSPIRGLQRAGRT 464
Query: 564 GRKHDGRI 571
GR+ DG++
Sbjct: 465 GRQRDGQL 472
>gi|167538349|ref|XP_001750839.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770660|gb|EDQ84343.1| predicted protein [Monosiga brevicollis MX1]
Length = 1758
Score = 311 bits (798), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 184/497 (37%), Positives = 272/497 (54%), Gaps = 22/497 (4%)
Query: 101 TWIYPVNVPVRDYQFAITKTALFSNTLVA--------LPTGLGKTLIAAVVIYNFFRWFP 152
T + V+ P+R AI TA + A GLGKT IAAVV+YNF+RW+P
Sbjct: 168 TGVDKVSSPLRTGPGAIVSTARPGGGIDAKGYPCLDSAAQGLGKTFIAAVVMYNFWRWYP 227
Query: 153 DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQV 212
+GK++F AP++PLV QQ+ AC+ I+G E +MTG R W+ KRVFF+TPQ
Sbjct: 228 NGKVLFMAPTKPLVAQQVNACYQIMGFRAEDICEMTGSKQHEHRDKLWQRKRVFFLTPQC 287
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQ 272
+D+Q G + +VC+V DEAHRA GN+AY I+ L++ Q R++AL+ATPG
Sbjct: 288 AVRDLQRGYFSAREVVCVVFDEAHRALGNHAYSLFIQSLLAESSQFRVMALSATPGDSVT 347
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332
+Q +I NL I +E R E DV+ YV+ R E + V M + + + V +P+
Sbjct: 348 KVQEVITNLLIDAIEIRGEEAADVAPYVNQRTAEKVVVPMSPDIEACRSMLNRVAQPFIK 407
Query: 333 RLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392
RL +L L+ L +RD+ R +K G +E F L++L +
Sbjct: 408 RLVQGRVLGETTLDRLTSRMLAITRDRARSG-DIGGGALKKGVLENSFAMLMSLSTLFGT 466
Query: 393 LSSHGIRPAYEMLEEKLKQGSF-ARFMSKNEDIRKV-KLLMQQS------ISHGAQSPKL 444
+S HGI P +E + + + + + KN + V K +Q + H PKL
Sbjct: 467 VSKHGITPFLISVENGIDKAKYIGKELQKNPAAQAVIKRFREQRENNPDFVGH----PKL 522
Query: 445 SKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASK 504
K+ ++L HF +R ++FS R SV+DI + L G+L++A FIGQ G +
Sbjct: 523 VKLRDILHSHFTAMGATATRAMVFSTIRDSVQDITDVLNRHGNLIRAVPFIGQGKGTGTG 582
Query: 505 GQSQKVQQA-VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
+ +QA VL++F+ G YNV+VAT + EEGLDI +VDL++C+D S R++QR GRT
Sbjct: 583 KGLTQKEQARVLQQFKNGQYNVLVATCVAEEGLDIGDVDLIVCYDQQGSQTRLVQRSGRT 642
Query: 564 GRKHDGRIPHIFKPEVQ 580
GRK DG+I + V+
Sbjct: 643 GRKRDGKIVFLMTANVE 659
>gi|401842847|gb|EJT44883.1| MPH1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 992
Score = 311 bits (796), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 195/573 (34%), Positives = 293/573 (51%), Gaps = 79/573 (13%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H ++D +A ++YP N VR+YQ+ I +LF NTL A+PTG+GKT IA+ V+ N+FRW
Sbjct: 68 HHELDCDALSFYVYPTNYEVREYQYNIVYKSLFENTLCAIPTGMGKTFIASTVMLNYFRW 127
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
KI+F AP+RPLV QQI+AC I GIP + T + + S R W +KRVFF TP
Sbjct: 128 TKKAKIIFTAPTRPLVAQQIKACLGITGIPSDQTAILLDK-SRKNREDIWASKRVFFATP 186
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
QV+E D++ G K +VCLVIDEAHRATG+YAY + + R+LALTATP S
Sbjct: 187 QVVENDLKRGVLDPKDIVCLVIDEAHRATGSYAYTNVVNFIDRFNSSYRLLALTATPASD 246
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+ +Q +++NL IS +E R E D+ Y+ R+ E IEV + E +I ++ ++P
Sbjct: 247 LEGVQEVVNNLGISRIEIRTEESMDIVKYMKKRRKEKIEVPLSLEIEDIIEQLGIAVKPV 306
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYFGALITLYHI 389
+ +G+ + D ++ + K P++P+ IK+ L L +
Sbjct: 307 LQQAVELGIYEECDPSQINAFKAMQQSQKI--IANPSIPEGIKWRNF-FILQLLNNLGQM 363
Query: 390 RRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLL-------MQQSISHGAQSP 442
+ L +GIR Y + K + + + K+ + + +++ H P
Sbjct: 364 LKRLKIYGIRTFYNYFQNKCTEFTTKYNLKKSTNKIAAEFYYHPILKNIKKQCEHYLNDP 423
Query: 443 ------KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI-GDLVKATEFI 495
KL + + L+D F+ K +SRVIIF+ R S +I+ + +I GD ++ FI
Sbjct: 424 KFVGHGKLQCVKDELMDFFQ-KSGSNSRVIIFTELRESALEIVKFVDSIGGDRIRPHIFI 482
Query: 496 GQSSGK------------ASKGQSQ----------------KVQQAVLEKF--------- 518
GQ+ K A KG+ + + ++A +KF
Sbjct: 483 GQARAKEGFDEVKYTRKHAPKGRKKTERLKRQEEEELLETERRKRAENDKFERTAKRTGS 542
Query: 519 ---------------------RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
+ G YNV+V TSIGEEGLDI EVDL++C+D SP++ I
Sbjct: 543 SEEAQISGMNQKMQKEVIHNFKNGEYNVLVCTSIGEEGLDIGEVDLIVCYDTTSSPIKNI 602
Query: 558 QRMGRTGRKHDGRIPHIFKPEVQF-VELSIEQY 589
QRMGRTGRK DG+I +F + E ++E Y
Sbjct: 603 QRMGRTGRKRDGKILLLFSSNESYKFERAMEDY 635
>gi|365983092|ref|XP_003668379.1| hypothetical protein NDAI_0B01020 [Naumovozyma dairenensis CBS 421]
gi|343767146|emb|CCD23136.1| hypothetical protein NDAI_0B01020 [Naumovozyma dairenensis CBS 421]
Length = 977
Score = 311 bits (796), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 201/576 (34%), Positives = 296/576 (51%), Gaps = 85/576 (14%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H + + E+ T++YP N VRDYQF I K +LF+N L A+PTG+GKT IA+ V+ N+F W
Sbjct: 68 HHKFNEESLSTYLYPTNFEVRDYQFDIVKKSLFTNILCAIPTGMGKTFIASTVMLNYFLW 127
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
GKI+F AP+RPLV QQI+AC I GIP + T + + S R W KRVFF TP
Sbjct: 128 TQTGKIIFTAPTRPLVAQQIKACLGITGIPSDETAILLDK-SRKNREEIWANKRVFFTTP 186
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
QV+E D++ G K +VCLVIDEAHRATG+YAY ++ + RILALTATPGS
Sbjct: 187 QVVENDLKRGVLNPKDIVCLVIDEAHRATGSYAYTNVVKFIDRFNSSYRILALTATPGSD 246
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
++Q +++NL IS +E R E D+ Y+ R+ I+ + E ++ ++ I+P
Sbjct: 247 LDSVQEVVNNLDISKIEIRTEESIDIVKYMKQREKVKIQTGLTTEIEDVIEQLGIAIQPV 306
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYFGALITLYHI 389
+ +G+ + + ++ + K P LP+ IK+ F L L H+
Sbjct: 307 LQQAVELGIYEECEPSRINSFKAMQLSQKI--IANPTLPEGIKWRN----FFILQLLNHV 360
Query: 390 RRLLSS---HGIRPAYEMLEEKLKQGSFARFMSKNEDIRK--------VKLLMQQSISHG 438
++L +G+R Y K K+ + + K+ + +K L + H
Sbjct: 361 GQMLKRIKIYGLRTFYNYFINKHKEFTTKYNLGKSTNKIAAGFYFHPILKTLRENCDKHV 420
Query: 439 AQ-----SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD-LVKAT 492
A KL + + L+D F+ P SRVIIF+ R S +I+ + ++ D ++
Sbjct: 421 ANPKFLGHEKLQNIRDELIDFFENGAP-DSRVIIFTELRESALEIVKCVDSMNDKRIRPH 479
Query: 493 EFIGQSSGKAS------------KG------------------------QSQKVQQAV-- 514
FIGQ+ GK KG + QK++++V
Sbjct: 480 IFIGQARGKEGFDEVTYSRKHKPKGRKKEDKLRRQEEERRIEEQRKLEKEQQKLERSVSR 539
Query: 515 --------------------LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
+++F+ G YNV+V TSIGEEGLDI EVDL+IC+D SP+
Sbjct: 540 TGSSEDAQINGMNQKRQKETIKEFKEGIYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPI 599
Query: 555 RMIQRMGRTGRKHDGRIPHIFKP-EVQFVELSIEQY 589
+ IQRMGRTGRK DG+I +F E E ++E Y
Sbjct: 600 KNIQRMGRTGRKRDGKIILLFSSNEATKFEQAMENY 635
>gi|254567149|ref|XP_002490685.1| ATP-dependent DNA helicase [Komagataella pastoris GS115]
gi|238030481|emb|CAY68405.1| ATP-dependent DNA helicase [Komagataella pastoris GS115]
gi|328351071|emb|CCA37471.1| fanconi anemia group M protein [Komagataella pastoris CBS 7435]
Length = 1001
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 214/610 (35%), Positives = 300/610 (49%), Gaps = 114/610 (18%)
Query: 59 QSTLDKFFGNLGPKPQGT--EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFA 116
Q TLD G + GT +E +F ++ H ++ +T+IYP N+ VR+YQF+
Sbjct: 43 QKTLD---GAIAVGQNGTTYKEIRHKVTFKKT--HHKLCTPNLETYIYPTNLEVREYQFS 97
Query: 117 ITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNI 176
I KTALF NTLV+LPTGLGKTLIA+ V+ NF+RW KI+F AP+RPLV QQI AC+ I
Sbjct: 98 IVKTALFKNTLVSLPTGLGKTLIASTVMLNFYRWSETAKIIFMAPTRPLVAQQIRACYTI 157
Query: 177 VGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAH 236
GIP + T + + + R W +KRVFF TPQV+E D+ +G K ++CLVIDEAH
Sbjct: 158 TGIPPQDTAILLDKTRRS-REEIWDSKRVFFTTPQVVENDLTNGLLNPKDIICLVIDEAH 216
Query: 237 RATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDV 296
RA YAY + + R+LALTATP + + +Q I+DNL IS++E R + D+
Sbjct: 217 RAKKRYAYNNVAQYIKRFNTSFRLLALTATPSADVEGVQEIVDNLMISSIEIRTDESLDI 276
Query: 297 SSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP-----V 351
Y+ NR +E ++ + + I E I P Q YQ P +
Sbjct: 277 KKYIKNRTLEKVQCDPNERMTAYTELICEAIAPIYE--------QCVKYQIFEPMGVAKI 328
Query: 352 DLLNSRDKFRQAPP-PNLPQIKFGEVEAYF---GALITLYHIRRLLSSHGIRPAYEMLEE 407
+ +R+ ++ P LP+ G YF LIT R LS +G+ Y +E
Sbjct: 329 NAFQAREASQKVQGNPRLPE---GTKWMYFFLLQLLITAGESFRRLSVYGVVAFYSYFKE 385
Query: 408 KLKQ---------------GSFARFMSKNEDIRKVKLLMQQ---------SISHGAQS-P 442
K + SF + + +R+V+ ++Q I+ GA S P
Sbjct: 386 KYDEFTTKWEAKKSKNKHAHSFYYHPAIKQLLREVETQIRQDKIASTHNPDITEGAFSHP 445
Query: 443 KLSKMLEVLVDHFKTKDP-KHSRVIIFSNFRGSVRDIMNALATIGD-----LVKATEFIG 496
KL MLE L D F K+ +S+VIIF+ FR S +I+ + + L K FIG
Sbjct: 446 KLPVMLEQLRDFFSVKENLLNSKVIIFTEFRESALEIVKVIESDNKRYPQPLFKPHIFIG 505
Query: 497 QSSGK--------ASKGQSQKVQQAVLE-------------------------------- 516
Q+ + +K +KV++ E
Sbjct: 506 QAKERNKFDEQEYKAKHSRRKVKKKTAEEKDSNMEEVTGQKGSETVKIDTRNRIESSKLA 565
Query: 517 ---------------KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMG 561
KFR N++VATSIGEEGLDI EVD +ICFD SP++ IQRMG
Sbjct: 566 HLKGMNQKAQKDLIDKFRGDELNILVATSIGEEGLDIGEVDFIICFDTTNSPIKNIQRMG 625
Query: 562 RTGRKHDGRI 571
RTGRK G++
Sbjct: 626 RTGRKRTGKV 635
>gi|448529774|ref|XP_003869912.1| Mph1 protein [Candida orthopsilosis Co 90-125]
gi|380354266|emb|CCG23779.1| Mph1 protein [Candida orthopsilosis]
Length = 1067
Score = 310 bits (793), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 188/535 (35%), Positives = 273/535 (51%), Gaps = 55/535 (10%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H ++D +T+IYP N VRDYQ+ I + A + N LVALPTGLGKT IA+ V+ NF RW
Sbjct: 97 HHEMDFGNLQTYIYPTNFEVRDYQYNIVRKAFYDNLLVALPTGLGKTFIASTVMLNFLRW 156
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
FP KI+F AP++PLV QQI+AC +I GI + + + + R W +++VFF TP
Sbjct: 157 FPSSKIIFMAPTKPLVAQQIKACCSITGISSS-KVAILLEKTRKNREEIWNSRQVFFTTP 215
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
QV+E D+ G K +V LVIDEAHRA GNY+Y + L R LALTATP +
Sbjct: 216 QVVENDLAFGVVNPKSIVLLVIDEAHRARGNYSYNNVVNFLRRFNDSFRTLALTATPAAD 275
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+ +Q +IDNL IS +E R E D+ Y+ +K+ +E + + + + I P
Sbjct: 276 VEGVQAVIDNLKISKVEVRTEQSIDIIKYMKRKKVCRRTLEASSDIRNCVDLLSKAISPV 335
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKF--RQAPPPNLPQIKFGEVEAYFGALITLYH 388
+ GL+ D ++ + + K + P L + L T+
Sbjct: 336 LKTANEKGLIDITDPTRINAFQCMEASRKLIANNSIPEGLKWANY----FILQLLGTVGQ 391
Query: 389 IRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK-----------NEDIRKVKLLMQQSISH 437
R L+ +G+ Y K + K +E I ++ + +IS
Sbjct: 392 CYRRLNIYGVNSFYSYFMNKYNEFDTKWKRKKSKNKLNADFYYSEPITELIEGQENAISS 451
Query: 438 GAQS-PKLSKMLEVLVDHFKTK-DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFI 495
S PK+ ++E L D F K D SRVIIF+ FR S +I+ ++ K FI
Sbjct: 452 QEFSHPKIEALMEELEDFFHEKSDDASSRVIIFTEFRESALEIVKSIEKASQSFKPHIFI 511
Query: 496 GQSSGKAS-----------------------------------KGQSQKVQQAVLEKFRA 520
GQ+ K G +QK+Q+ +++KF+
Sbjct: 512 GQAKEKEKFEVENFGKKKGTKKKSKKEDNGRDSSRTSSENAQISGMNQKLQKEIIKKFKN 571
Query: 521 GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
G YN++VATSIGEEGLDI EVDL++C+D+ SP++ IQRMGRTGRK DG++ +F
Sbjct: 572 GEYNILVATSIGEEGLDIGEVDLIVCYDSTSSPIKNIQRMGRTGRKRDGKVLLLF 626
>gi|452836449|gb|EME38393.1| hypothetical protein DOTSEDRAFT_75812 [Dothistroma septosporum
NZE10]
Length = 913
Score = 310 bits (793), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/451 (37%), Positives = 259/451 (57%), Gaps = 27/451 (5%)
Query: 144 IYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203
+ N++RW +IVF AP++PL+ QQ+EAC+ IVGIP++ T+ MTG+ +P R+ W K
Sbjct: 1 MLNYYRWTTAAQIVFMAPTKPLIAQQMEACYGIVGIPKQDTVLMTGETTPAVRSDEWLDK 60
Query: 204 RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILAL 263
RVFF+TPQ + D+++G C K L+ LV+DEAH+ATG YAY I + R+LAL
Sbjct: 61 RVFFMTPQTVINDLKTGICDPKKLILLVVDEAHKATGGYAYTEVIAFMQRFNSSFRVLAL 120
Query: 264 TATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI 323
TATPGS + +Q +IDNL I+ +E R E D+ Y H + E + + I
Sbjct: 121 TATPGSTVEAVQAVIDNLGIARVELRTERSLDIRQYTHEKHTETEAFDFSPQQGRIMELF 180
Query: 324 WEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP-NLPQIKFGEVEAYFGA 382
+ ++ +LS+ ++D L+ L +R K+ Q+ PQ G + A F
Sbjct: 181 AKALQTSVDKLSSQNAYWSKDPMKLTAYGLTTARQKWMQSDTGRKAPQPVKGMMNAIFTV 240
Query: 383 LITLYHIRRLLSSHGIRPAY-------EMLEEKLKQGSFARFMSKNEDIRKVKLLMQ--- 432
L +L H LL HGI P Y + +E + A ++ ++ R + ++
Sbjct: 241 LSSLAHSIGLLKFHGIGPFYSGVIAFQQEVESGQTKSKTATGIAHSDHFRTMMSTIRTWT 300
Query: 433 ---QSISHGAQSPKLSKMLEVLVDHF-------KTKD--PKHSRVIIFSNFRGSVRDIMN 480
+ H PKL + EV+++HF + D P +RV+IF+++R SV +I+
Sbjct: 301 NDPNFVGH----PKLEYVREVVLNHFLDAGEGMQGSDVPPSATRVMIFASYRDSVEEIVR 356
Query: 481 ALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIME 540
L +++ F+GQ++ K S+G QK Q AV++ F++G YN +VATSIGEEGLDI
Sbjct: 357 VLKRNEPMIRPHVFVGQAASKGSEGMDQKKQNAVIQDFKSGKYNTLVATSIGEEGLDIGT 416
Query: 541 VDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
VDL++C+DA+ SP+RM+QR+GRTGRK GR+
Sbjct: 417 VDLIVCYDASSSPIRMLQRIGRTGRKRVGRV 447
>gi|401625242|gb|EJS43260.1| mph1p [Saccharomyces arboricola H-6]
Length = 990
Score = 310 bits (793), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 200/594 (33%), Positives = 300/594 (50%), Gaps = 95/594 (15%)
Query: 77 EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGK 136
EE SF + H ++D +A ++YP N VRDYQ+ I +LF NTL A+PTG+GK
Sbjct: 56 EEIQRDVSFGPT--HHELDHDALSFYVYPTNYEVRDYQYTIVYKSLFQNTLCAIPTGMGK 113
Query: 137 TLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR 196
T IA+ V+ N+FRW KI+F AP+RPLV QQI+AC I GIP + T + + S R
Sbjct: 114 TFIASTVMLNYFRWTKKAKIIFTAPTRPLVAQQIKACLGITGIPSDQTAILLDK-SRKNR 172
Query: 197 ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV 256
W KRVFF TPQV+E D++ G K +VCLVIDEAHRATG+YAY ++ +
Sbjct: 173 EEIWANKRVFFATPQVVENDLKRGVLDPKDVVCLVIDEAHRATGSYAYTNVVKFIDRFNS 232
Query: 257 QLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316
R+LALTATP S + +Q +++NL IS +E R E D+ Y+ R E IEV + E
Sbjct: 233 SYRLLALTATPASDLEGVQEVVNNLNISKIEIRTEESIDIVKYMKKRTKEKIEVPLLLEI 292
Query: 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGE 375
+I ++ ++P + +G+ + D ++ + K P +P+ IK+
Sbjct: 293 EDIIEQLGIAVKPVLRQAVELGIYEECDPSQINAFKAMQQSQKI--IANPTIPEGIKWRN 350
Query: 376 VEAYFGALITLYHIRRLLSS---HGIRPAYEMLEEKLKQGSFARFMSKNED--------- 423
F L L ++ ++L +GIR + + K + + + K+ +
Sbjct: 351 ----FFILQLLNNVGQMLKRLKIYGIRTFFNYFQNKCTEFTTKYNLKKSTNKTAAEFYYH 406
Query: 424 --IRKVKLLMQQS------ISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
++ +K ++ + HG KL + + L++ F+ + SRVIIF+ R S
Sbjct: 407 PILKNIKNQCERYLNDPKFVGHG----KLQCVKDELMEFFQERGS-DSRVIIFTELRESA 461
Query: 476 RDIMNAL-ATIGDLVKATEFIGQSSGK------------ASKGQSQ-------------- 508
+I+ + +T + ++ FIGQ+ K A KG+ +
Sbjct: 462 LEIVKFIDSTSSNRIRPHIFIGQARAKEGFDEVKYTRKHAPKGRKKTERLKRQEEDESLE 521
Query: 509 --------------------------------KVQQAVLEKFRAGGYNVIVATSIGEEGL 536
KVQ+ V+ F+ G YNV+V TSIGEEGL
Sbjct: 522 AERRKRAENDKFERSARRTGSSEEAQISGMNQKVQKEVIHNFKKGEYNVLVCTSIGEEGL 581
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQF-VELSIEQY 589
DI EVDL+IC+D SP++ IQRMGRTGRK DG+I +F + E ++E Y
Sbjct: 582 DIGEVDLIICYDTTSSPIKNIQRMGRTGRKRDGKIVLLFSSNESYKFERAMEDY 635
>gi|320583687|gb|EFW97900.1| ATP-dependent DNA helicase [Ogataea parapolymorpha DL-1]
Length = 1082
Score = 309 bits (792), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 200/570 (35%), Positives = 285/570 (50%), Gaps = 94/570 (16%)
Query: 90 CHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR 149
H ++ A +T++YP N VRDYQF I K AL+ N L LPTGLGKT IA+ V+ NFFR
Sbjct: 72 THHPLNYSALETFVYPTNYEVRDYQFEIVKQALYQNLLCVLPTGLGKTFIASTVMLNFFR 131
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
W D K++F AP+RPLV QQI+AC+ I GIP + T + + + RA W++KRVFF T
Sbjct: 132 WTRDAKVIFMAPTRPLVAQQIKACYGITGIPSDQTAILLDK-TRRNRAEIWRSKRVFFTT 190
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQV+E D++SGT K +V LV+DEAHR+ G YAY + + +RIL L+ATPGS
Sbjct: 191 PQVVENDLKSGTLNPKDIVLLVVDEAHRSKGAYAYAAVVAYMRKFNTSVRILGLSATPGS 250
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
++IQ I+DNL IS +E R E D + Y+ R I I+ E+ I I E I P
Sbjct: 251 DVESIQGIVDNLVISRIEVRTEDSPDTAKYMKGRDILKIDCEVTDSIALIVELICEAILP 310
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYF--GALITL 386
+ + G+ D ++ + K + P L + IK+ YF L T+
Sbjct: 311 VLRKANGSGIYDITDPSKINHFQAMEKSQKVIKN--PTLAEGIKWT---YYFQLQLLGTV 365
Query: 387 YHIRRLLSSHGIRPAYEMLEEKLKQ---------------GSF---ARFMSKNEDIRKVK 428
+ R L +GI+ Y +K + SF AR + K+
Sbjct: 366 GQLLRRLYVYGIQTFYSYFLDKFTEFTTKYDNKKSTNKIAASFYYHARIKELKNRVEKMI 425
Query: 429 LLMQQSISHGAQ------SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL 482
+ ++ + G + K+ M++ L F +S+VIIF+ R S DI+ L
Sbjct: 426 VEDEEKSAKGERIRGIFSHSKMQHMVDELESFFDETQNLNSKVIIFTELRESALDIVKCL 485
Query: 483 ATIGDLVKATE------------FIGQSSGKAS--------------------------- 503
+ ++ A FIGQ+ K
Sbjct: 486 ESANSIIHARNPSRPRELFKPHIFIGQAKEKEKFDSESFVKKHGPKGRGKNKQSEPRKET 545
Query: 504 ----------------------KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
+G +Q+VQ+ ++ +F+ G YNV+VATSIGEEGLDI EV
Sbjct: 546 KPKFELKLRPNDRVRSSEDAQLRGMTQRVQKELIAEFKKGVYNVLVATSIGEEGLDIGEV 605
Query: 542 DLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
DL++C+D+ SP++ IQRMGRTGRK DGRI
Sbjct: 606 DLIVCYDSTSSPIKNIQRMGRTGRKRDGRI 635
>gi|403331000|gb|EJY64418.1| DEAD/DEAH box RNA helicase, putative [Oxytricha trifallax]
Length = 900
Score = 309 bits (791), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 176/462 (38%), Positives = 275/462 (59%), Gaps = 19/462 (4%)
Query: 123 FSNTLV---ALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVG- 178
N LV LPTGLGKT IA+ ++N++RWF DG I F AP++PLV QQ EA ++
Sbjct: 17 LQNLLVQNFTLPTGLGKTFIASTTMFNYYRWFDDGLIFFLAPTKPLVTQQTEAFAQVISE 76
Query: 179 IPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRA 238
+P + I++TG + KR ++ KRVFF+TPQ L+KDI++ +K +V LVIDEAHRA
Sbjct: 77 VPLDDIIELTGNQNKDKRKIAYRLKRVFFMTPQTLQKDIENNILDVKKIVLLVIDEAHRA 136
Query: 239 TGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSS 298
TGNYAYC I+ L + RI+AL+ATP SK + +Q ++++L + LE R+E D+++
Sbjct: 137 TGNYAYCRIIQLLEEQNIGFRIVALSATPVSKIENLQTVVNSLRCAMLEVRDEEDEEIKQ 196
Query: 299 YVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLL-QNRDYQTLSPVDLLNSR 357
Y H + I I VE E+ +I +++ + L + L+ QN + ++ ++LLN +
Sbjct: 197 YTHGKDIVEILVEKEDHITEMELKIMKLMALALAFLKQMQLVNQNMQPKFITKMNLLNLQ 256
Query: 358 DKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG-------IRPAYEMLEEKLK 410
D+FR PN V L+++ H ++LL+ HG I +++ ++ K
Sbjct: 257 DEFR-GKMPNFAPSMISCVFERVSFLLSMCHAKQLLAVHGTESFSDYIVNFFDVTKKDKK 315
Query: 411 QGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSN 470
+F + + ++ED + + ++++ PKL K+ E+L F+ + K S+VI+FS
Sbjct: 316 HVNFIKAIKESEDYKDMISYIEET-KQTKNHPKLKKLSEILDLFFRDETHKDSKVIVFSQ 374
Query: 471 FRGSVRDIMNALATIGD-LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
FR S +I L + +V A F+GQ++ G SQKVQ A++++F+ G N +VAT
Sbjct: 375 FRESANEIKRYLVRKNEGVVHAEVFVGQNNN----GLSQKVQAAMIQRFKTGKTNTLVAT 430
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ EEGLDI VDL+I +D SP+RMIQR GRTGR G++
Sbjct: 431 CVAEEGLDIGNVDLIISYDCLASPIRMIQRFGRTGRAGCGQV 472
>gi|255716972|ref|XP_002554767.1| KLTH0F13310p [Lachancea thermotolerans]
gi|238936150|emb|CAR24330.1| KLTH0F13310p [Lachancea thermotolerans CBS 6340]
Length = 1028
Score = 309 bits (791), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 199/567 (35%), Positives = 282/567 (49%), Gaps = 78/567 (13%)
Query: 77 EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGK 136
EE + SF + H ++ T+IYP N VR+YQF I K AL+ N + A+PTG GK
Sbjct: 54 EEIHTKVSFGPT--HHDLNTGNLGTYIYPTNYEVREYQFQIVKKALYENLICAIPTGTGK 111
Query: 137 TLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR 196
T IA+ V+ NF+RW + KI+F AP+RPLV QQI+AC + GIP + T + + S R
Sbjct: 112 TFIASTVMLNFYRWTKNAKIIFTAPTRPLVAQQIKACLGVTGIPHDDTAILLDK-SRKNR 170
Query: 197 ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV 256
W +KRVFF TPQV+E D++ G K + CLVIDEAHRA G Y+Y + +
Sbjct: 171 GDIWSSKRVFFTTPQVVENDLKRGVLNPKDVACLVIDEAHRARGAYSYVELSKFMDRFNT 230
Query: 257 QLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316
RILALTATP + + +Q +++NL IS +E R E D DV+ Y+ R E +EV + E
Sbjct: 231 SYRILALTATPATDLEGVQEVVNNLNISRIELRTEEDADVARYMKVRDKEQVEVGLLPEI 290
Query: 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEV 376
+I ++ + P +G+ + ++ L K P +P+ +
Sbjct: 291 EDIIEQLGIAVTPVLKEAVELGIYDDCPPSQINAFVALQKSQKI--IANPTIPEGVKWKN 348
Query: 377 EAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLL------ 430
L + H+ R L +GIR Y E K K+ + M K+ +
Sbjct: 349 FFILQLLGNVGHMLRRLKIYGIRCFYTYFENKYKEFTTKYGMGKSTNKTAASFFYSPILK 408
Query: 431 -MQQSISHGAQSP------KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALA 483
M +S Q P KL + E L++ F+ P SRVIIF+ R S +I+ +
Sbjct: 409 RMMESCQKLLQDPGFLGHEKLHRAREELIEFFQDCQPT-SRVIIFTELRESALEIVKCID 467
Query: 484 TIG-DLVKATEFIGQSSGK----------------------------------------- 501
+G ++ FIGQ+ GK
Sbjct: 468 MLGTSTLRPHIFIGQARGKEGFDDGEYAMKHKPKGRKKADRLKRLEQEQLLEEEKKKEKE 527
Query: 502 -------ASK-GQSQKVQ---------QAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
AS+ G S++ Q + VL KF+ G YN++V TSIGEEGLDI EVDL+
Sbjct: 528 RKRLDRAASRTGTSEEAQVSGMNQKQQKEVLRKFKDGTYNILVCTSIGEEGLDIGEVDLI 587
Query: 545 ICFDANVSPLRMIQRMGRTGRKHDGRI 571
IC+DA SP++ IQRMGRTGRK DG+I
Sbjct: 588 ICYDATSSPIKNIQRMGRTGRKRDGKI 614
>gi|307111602|gb|EFN59836.1| hypothetical protein CHLNCDRAFT_133597 [Chlorella variabilis]
Length = 1000
Score = 309 bits (791), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 195/511 (38%), Positives = 281/511 (54%), Gaps = 41/511 (8%)
Query: 99 AKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVF 158
A+ W++P V R YQ A +TAL +NTLV LPTGLGKTLIAAVV++NF RWFP+GK+VF
Sbjct: 457 ARHWVFPKGVSQRKYQLACIQTALLTNTLVCLPTGLGKTLIAAVVMHNFARWFPEGKVVF 516
Query: 159 AAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK--TKRVFFVTPQVLEKD 216
AP+RPLV QQ+EACH+ +G+ + ++TG P R W+ +R FF TPQ KD
Sbjct: 517 VAPTRPLVAQQMEACHSFMGMSKSGFCEITGGSRPDARKQEWQGGIRRAFFCTPQTFWKD 576
Query: 217 IQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQH 276
+Q+G C + +VCLV+DE HRATGN A+ + + RIL L+ATPG+ +Q
Sbjct: 577 LQNGICPYERVVCLVVDECHRATGNQDIVKAVSLMRQHKCKFRILGLSATPGADGAKVQA 636
Query: 277 IIDNL--YISTLEYRNESDQDVSSYVHNR----KIELIE-VEMGQEAVEINNRIWEVIRP 329
+L I L + + V V + IE +E V +E V + + +I
Sbjct: 637 GRASLPRRIPLLTVAAKVTRLVMLEVIEKLMISAIEFLELVYPTRETVPLRAVLLRLIHN 696
Query: 330 YTSRLSAIG-LLQNRDYQTLSPVDLLNSR--DKFRQAPPPNLPQIKFGEVEAYFGALI-T 385
+ + L A N + +T+S L S+ + F P + Q G A G
Sbjct: 697 FIASLVAKKEYYGNPNPETVSSHALRTSQKANSFN----PAIAQA--GLAWAGLGTCAQA 750
Query: 386 LYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLS 445
L +R LL +G+ A L +K+ ++ + + + + ++ ++ +G SPKL
Sbjct: 751 LVQVRDLLDVYGVAQALSYLNQKIND-NYMKSLRDDSMFCSFQQSLEAAVRNGGSSPKLI 809
Query: 446 KMLEVLVDHFKTK---DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQS---- 498
K++++L HF + + RVI+F+NFR V +I AL L+ A FIGQS
Sbjct: 810 KLVQILRQHFSAQGGEEGASGRVIVFTNFRDGVAEIRAALQAHEPLITARSFIGQSNSGK 869
Query: 499 --SGKAS-KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIME-----------VDLV 544
GKAS G +QK Q+ VL+ FR+G +N +VAT IGEEGLDI + VDL+
Sbjct: 870 SRGGKASGGGMTQKEQKEVLKGFRSGAFNCLVATCIGEEGLDIPQASCHKDACLAGVDLI 929
Query: 545 ICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
+C+DA SP R QRMGRTGR +GR+ +I
Sbjct: 930 VCYDATSSPTRSTQRMGRTGRHKEGRVVYIL 960
>gi|367017778|ref|XP_003683387.1| hypothetical protein TDEL_0H03170 [Torulaspora delbrueckii]
gi|359751051|emb|CCE94176.1| hypothetical protein TDEL_0H03170 [Torulaspora delbrueckii]
Length = 1006
Score = 308 bits (789), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 204/569 (35%), Positives = 289/569 (50%), Gaps = 96/569 (16%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H ++ +A ++YP N VR+YQF I + ALF NTL A+PTG+GKT IA+ V+ NFFRW
Sbjct: 68 HHKLVQDALGHYVYPTNFEVREYQFDIVRKALFQNTLCAIPTGMGKTFIASTVMLNFFRW 127
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
GKI+F AP+RPLV QQI+AC I GIPQ+ T + + S R W+ KRVFF TP
Sbjct: 128 SQSGKIIFTAPTRPLVAQQIKACLGITGIPQDQTAILLDK-SRKNREEIWEEKRVFFTTP 186
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
QV+E D++ G K ++ +VIDEAHRATG+YAY I+ + R+LALTATPG+
Sbjct: 187 QVMENDLKRGVLHPKDIITIVIDEAHRATGSYAYTNIIKFVSRFNTSYRVLALTATPGTD 246
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+Q +++NL IS +E R E D+ Y+ + IEV E +I +I I P
Sbjct: 247 LIGVQEVVNNLEISKIEARTEESADIVRYMRKKSRAKIEVSPTVEIEDIIEQIGIAILPV 306
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYFGALITLYHI 389
S+ + + ++ + ++ + K P +P+ IK+ F L L H+
Sbjct: 307 LSQAIELKIYEDCNPSQINAFKAMQQSQKI--IANPGIPEGIKWRN----FFILQLLNHV 360
Query: 390 RRLLSS---HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKL--------LMQQS---- 434
++L +GIR Y +K K+ + + K+ + + +M+Q
Sbjct: 361 GQMLKRIKIYGIRTFYNYFIDKHKEFTTKYSLGKSTNKTAAEFYYNPILTTMMKQCESLL 420
Query: 435 -----ISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD-- 487
+ HG KL+ + E L D F + +SRVIIF+ R S +I+ + T+ +
Sbjct: 421 SNPKFLGHG----KLNHVREELADFF-SDIGSNSRVIIFTELRESALEIVKCVDTMNEPG 475
Query: 488 ---LVKATEFIGQSSGK--------ASKGQSQ-----------------------KVQQA 513
V+ FIGQ+ GK A K Q + K QA
Sbjct: 476 HPYQVRPHIFIGQAKGKEGFDEVTFARKNQPKGRKKADRLKRLEEEKQLEEDRKLKKTQA 535
Query: 514 VLE---------------------------KFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
LE KF+ G YNV+V TSIGEEGLDI EVDL+IC
Sbjct: 536 KLERGTRRTGSSEEAQLNGMTQKQQKEVIMKFKNGEYNVLVCTSIGEEGLDIGEVDLIIC 595
Query: 547 FDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
+D SP++ IQRMGRTGRK DGRI +F
Sbjct: 596 YDTTSSPIKNIQRMGRTGRKRDGRIVLLF 624
>gi|444324132|ref|XP_004182706.1| hypothetical protein TBLA_0J01920 [Tetrapisispora blattae CBS 6284]
gi|387515754|emb|CCH63187.1| hypothetical protein TBLA_0J01920 [Tetrapisispora blattae CBS 6284]
Length = 1080
Score = 308 bits (789), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 201/581 (34%), Positives = 303/581 (52%), Gaps = 95/581 (16%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
+IYP N +R+YQF+I + ALF N L A+PTG+GKT IA+ V+ NFFRW GKI+F AP
Sbjct: 81 YIYPTNFELREYQFSIVRRALFENVLCAIPTGMGKTFIASTVMLNFFRWSKTGKIIFTAP 140
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
+RPLV QQI+AC I GIP T + + + R S W +KRVFF TPQV+E D++ G
Sbjct: 141 TRPLVAQQIQACLGITGIPSAQTAILLDK-TRRNRESIWNSKRVFFTTPQVVENDLKRGV 199
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
K ++CLVIDEAHR TG+YAY ++ + RILALTATPG++ ++Q ++ NL
Sbjct: 200 LNPKDIICLVIDEAHRGTGSYAYVNVVKFIDRFNSSYRILALTATPGTELASVQEVVSNL 259
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
IS +E R E D++ Y+ N++ I + + + +I ++ I P + +G+ +
Sbjct: 260 DISKIEIRTEDSSDITRYMKNKEKVKINLPLSSDIEDIIEKLGMAITPVLQQAIGLGIYE 319
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPP----PNLPQ-IKFGEVEAYFGALITLYHIRRLLSS- 395
+ P +N+ +Q+ P +P+ IK+ YF L L H+ ++L
Sbjct: 320 D------CPPSKINAFVALQQSKKIISNPAIPEGIKW---RNYF-ILQLLNHVGQMLKRI 369
Query: 396 --HGIRPAYEMLEEKLKQGSFARFMSKNEDIRK--------VKLLMQQSIS-----HGAQ 440
+GIRP + LE K + + + K+ + +K LM+ H
Sbjct: 370 KIYGIRPFFNYLENKHLEFTTKYELGKSTNKLAAGFYYNPILKSLMKDCEKLIENPHFLG 429
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL-VKATEFIGQSS 499
K+ + + L+ F+ + SRVIIF+ R S +I+ +A + + ++ FIGQ+
Sbjct: 430 HEKMQCIRDELISFFE-EVGSSSRVIIFTELRESALEIVKCVAGMNNADIRPHIFIGQAK 488
Query: 500 GK------------------------------------------------ASK-GQSQKV 510
GK AS+ G S++
Sbjct: 489 GKEGFDEVEFNRKHKPKGRKKVDRLKRQEEVEEAKRIQAEQKDHAKQLRTASRTGSSEEA 548
Query: 511 Q---------QAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMG 561
Q + V+ +F+ G YNV+V TSIGEEGLDI EVDL+IC+D SP++ IQRMG
Sbjct: 549 QINGMNQKRQKEVISQFKNGDYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRMG 608
Query: 562 RTGRKHDGRIPHIF--KPEVQFVELSIEQYVSRGKKVKDDH 600
RTGRK DG+I +F E +F E ++E Y S K + ++
Sbjct: 609 RTGRKRDGKIILLFSSNEETKF-EKAMEDYASLQKLISQNY 648
>gi|380803877|gb|AFE73814.1| Fanconi anemia group M protein, partial [Macaca mulatta]
Length = 359
Score = 306 bits (785), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 149/319 (46%), Positives = 198/319 (62%), Gaps = 1/319 (0%)
Query: 104 YPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163
YP N PVRDYQ I++ ALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+VF AP++
Sbjct: 1 YPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTK 60
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL 223
PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+ G C
Sbjct: 61 PLVTQQIEACYQVMGIPQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDLSRGACP 120
Query: 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYI 283
+ CLVIDEAH+A GNYAYC +REL+ RILAL+ATPGS + +Q +I NL I
Sbjct: 121 AAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQVITNLLI 180
Query: 284 STLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNR 343
+E R+E D+ +Y + RKIE + V +G+E I +++ + L +L R
Sbjct: 181 GQIELRSEDSPDILAYSYERKIEKLIVPLGEELAAIQKTYIQILESFAHSLIQRNVLMRR 240
Query: 344 DYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYE 403
D L+ ++ +RD+FR+ P PN+ I+ G +E F I+LYH LL G+R Y
Sbjct: 241 DIPNLTKYQIILARDQFRKNPSPNIVGIQQGVIEGEFAICISLYHGYELLQQMGMRSLYF 300
Query: 404 MLEEKLKQGSFARFMSKNE 422
L + G+ SKNE
Sbjct: 301 FL-CGIMDGTKGMTRSKNE 318
>gi|302310612|ref|XP_453667.2| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|199425049|emb|CAH00763.2| KLLA0D13552p [Kluyveromyces lactis]
Length = 1008
Score = 305 bits (781), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 205/595 (34%), Positives = 292/595 (49%), Gaps = 89/595 (14%)
Query: 65 FFGNLGPKPQGTEEFNEGSSFDESL--CHVQIDAEAAKTWIYPVNVPVRDYQFAITKTAL 122
F N+ P Q F E + D S H Q++ E +IYP N VR YQ+ I + AL
Sbjct: 63 LFMNVLPNQQT---FYEETHTDVSYGPTHHQLNEENLDEYIYPTNYEVRQYQYDIVRCAL 119
Query: 123 FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182
F N L A+PTG GKT IA+ V+ N++RW KI+F AP+RPLV QQI+AC I GIP
Sbjct: 120 FENVLCAIPTGTGKTFIASTVMLNYYRWTKSSKIIFTAPTRPLVAQQIKACLGITGIPYS 179
Query: 183 WTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNY 242
T + + S R W+ KRVFF TPQV+E D++ G K +V LVIDEAHRA GNY
Sbjct: 180 DTAILLDK-SRKNREEIWQQKRVFFTTPQVVENDLKRGVLNPKDVVLLVIDEAHRARGNY 238
Query: 243 AYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHN 302
AY + + R+LALTATP + + +Q +++NL+IS +E R E DV+ Y+
Sbjct: 239 AYVELTKFIDRFNTSYRLLALTATPAADLEGVQEVVNNLHISKIELRTEDSLDVARYMMR 298
Query: 303 RKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQ 362
R E+IE+ + E E+ +I I P +G+ ++ + ++ + K
Sbjct: 299 RDREMIEIGLIPEIEEVVEQIGIAIAPVLQEAIQLGIYESCEPHQINAFVAMQQSQKIIL 358
Query: 363 AP--PPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK 420
P P L F ++ L + H+ R L +G+R Y + K + + M K
Sbjct: 359 NPSIPEGLKWKNFFILQ----LLSQVGHMYRRLRIYGLRAFYNYFQNKYTEFTTKYSMKK 414
Query: 421 NED---------------IRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRV 465
+ + I K K +++ + + KL + L D F T P SR
Sbjct: 415 STNKTAANFFYSPILKTVIDKCKRRLEEPEFYSHE--KLEYLNNELADFF-TMAPSDSRA 471
Query: 466 IIFSNFRGSVRDIMNALATIGD-LVKATEFIGQSSGKAS------------KGQSQKV-- 510
IIF+ R S +I+ ++ + D ++ FIGQ+ GK KG+++
Sbjct: 472 IIFTELRESALEIVKSIDILNDGALRPHIFIGQAKGKEHFDEETYIRKNKPKGRTKAARL 531
Query: 511 -----------------QQAVLEK---------------------------FRAGGYNVI 526
+QA LE+ F+ G YNV+
Sbjct: 532 RRIEEENRVEEEKKRQKEQAKLERTGRRTGSSEEAQLSGMNQKQQKKVISDFKKGIYNVL 591
Query: 527 VATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQF 581
V TSIGEEGLDI EVDL+ICFD+ SP++ IQRMGRTGRK DGRI +F +F
Sbjct: 592 VCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGRTGRKRDGRIVLLFSGNEKF 646
>gi|189082533|sp|Q6CQX2.2|MPH1_KLULA RecName: Full=ATP-dependent DNA helicase MPH1
Length = 1002
Score = 305 bits (781), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 205/595 (34%), Positives = 292/595 (49%), Gaps = 89/595 (14%)
Query: 65 FFGNLGPKPQGTEEFNEGSSFDESL--CHVQIDAEAAKTWIYPVNVPVRDYQFAITKTAL 122
F N+ P Q F E + D S H Q++ E +IYP N VR YQ+ I + AL
Sbjct: 57 LFMNVLPNQQT---FYEETHTDVSYGPTHHQLNEENLDEYIYPTNYEVRQYQYDIVRCAL 113
Query: 123 FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182
F N L A+PTG GKT IA+ V+ N++RW KI+F AP+RPLV QQI+AC I GIP
Sbjct: 114 FENVLCAIPTGTGKTFIASTVMLNYYRWTKSSKIIFTAPTRPLVAQQIKACLGITGIPYS 173
Query: 183 WTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNY 242
T + + S R W+ KRVFF TPQV+E D++ G K +V LVIDEAHRA GNY
Sbjct: 174 DTAILLDK-SRKNREEIWQQKRVFFTTPQVVENDLKRGVLNPKDVVLLVIDEAHRARGNY 232
Query: 243 AYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHN 302
AY + + R+LALTATP + + +Q +++NL+IS +E R E DV+ Y+
Sbjct: 233 AYVELTKFIDRFNTSYRLLALTATPAADLEGVQEVVNNLHISKIELRTEDSLDVARYMMR 292
Query: 303 RKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQ 362
R E+IE+ + E E+ +I I P +G+ ++ + ++ + K
Sbjct: 293 RDREMIEIGLIPEIEEVVEQIGIAIAPVLQEAIQLGIYESCEPHQINAFVAMQQSQKIIL 352
Query: 363 AP--PPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK 420
P P L F ++ L + H+ R L +G+R Y + K + + M K
Sbjct: 353 NPSIPEGLKWKNFFILQ----LLSQVGHMYRRLRIYGLRAFYNYFQNKYTEFTTKYSMKK 408
Query: 421 NED---------------IRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRV 465
+ + I K K +++ + + KL + L D F T P SR
Sbjct: 409 STNKTAANFFYSPILKTVIDKCKRRLEEPEFYSHE--KLEYLNNELADFF-TMAPSDSRA 465
Query: 466 IIFSNFRGSVRDIMNALATIGD-LVKATEFIGQSSGKAS------------KGQSQKV-- 510
IIF+ R S +I+ ++ + D ++ FIGQ+ GK KG+++
Sbjct: 466 IIFTELRESALEIVKSIDILNDGALRPHIFIGQAKGKEHFDEETYIRKNKPKGRTKAARL 525
Query: 511 -----------------QQAVLEK---------------------------FRAGGYNVI 526
+QA LE+ F+ G YNV+
Sbjct: 526 RRIEEENRVEEEKKRQKEQAKLERTGRRTGSSEEAQLSGMNQKQQKKVISDFKKGIYNVL 585
Query: 527 VATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQF 581
V TSIGEEGLDI EVDL+ICFD+ SP++ IQRMGRTGRK DGRI +F +F
Sbjct: 586 VCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGRTGRKRDGRIVLLFSGNEKF 640
>gi|189082208|sp|A6ZVS0.1|MPH1_YEAS7 RecName: Full=ATP-dependent DNA helicase MPH1; AltName:
Full=Mutator phenotype protein 1
gi|151943160|gb|EDN61495.1| DEAH family protein [Saccharomyces cerevisiae YJM789]
Length = 993
Score = 303 bits (775), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 202/594 (34%), Positives = 301/594 (50%), Gaps = 95/594 (15%)
Query: 77 EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGK 136
EE SF + H ++D +A ++YP N VRDYQ+ I +LF NTL A+PTG+GK
Sbjct: 56 EEIQRDVSFGPT--HHELDYDALSFYVYPTNYEVRDYQYTIVHKSLFQNTLCAIPTGMGK 113
Query: 137 TLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR 196
T IA+ V+ N+FRW KI+F AP+RPLV QQI+AC I GIP + T + + S R
Sbjct: 114 TFIASTVMLNYFRWTKKAKIIFTAPTRPLVAQQIKACLGITGIPSDQTAILLDK-SRKNR 172
Query: 197 ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV 256
W KRVFF TPQV+E D++ G K +VCLVIDEAHRATG+YAY ++ +
Sbjct: 173 EEIWANKRVFFATPQVVENDLKRGVLDPKDIVCLVIDEAHRATGSYAYTNVVKFIDRFNS 232
Query: 257 QLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316
R+LALTATP S + +Q +++NL IS +E R E D+ Y+ RK E IEV + E
Sbjct: 233 SYRLLALTATPASDLEGVQEVVNNLDISKIEIRTEESMDIVKYMKKRKKEKIEVPLLLEI 292
Query: 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGE 375
+I ++ ++P + +G+ + D ++ + K P +P+ IK+
Sbjct: 293 EDIIEQLGIAVKPVLQQAIELGIYEECDPSQINAFKAMQQSQKI--IANPTIPEGIKWRN 350
Query: 376 VEAYFGALITLYHIRRLLSS---HGIRPAYEMLEEKLKQGSFARFMSKNED--------- 423
F L L ++ ++L +GIR + + K + + + K+ +
Sbjct: 351 ----FFILQLLNNVGQMLKRLKIYGIRTFFNYFQNKCTEFTTKYNLKKSTNKIAAEFYYH 406
Query: 424 --IRKVKLLMQQSIS------HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
++ +K + +S HG KL + + L++ F+ K SRVIIF+ R S
Sbjct: 407 PILKNIKNQCENYLSDPKFVGHG----KLQCVRDELMEFFQ-KRGSDSRVIIFTELRESA 461
Query: 476 RDIMNALATIG-DLVKATEFIGQSSGK------------ASKGQSQ-------------- 508
+I+ + ++ D ++ FIGQ+ K A KG+ +
Sbjct: 462 LEIVKFIDSVANDQIRPHIFIGQARAKEGFDEVKYTRKHAPKGRKKVERLHRQEQEKFLE 521
Query: 509 --------------------------------KVQQAVLEKFRAGGYNVIVATSIGEEGL 536
K+Q+ V+ F+ G YNV+V TSIGEEGL
Sbjct: 522 AERTKRAANDKLERSARRTGSSEEAQISGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGL 581
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQF-VELSIEQY 589
DI EVDL+IC+D SP++ IQRMGRTGRK DG+I +F + E ++E Y
Sbjct: 582 DIGEVDLIICYDTTSSPIKNIQRMGRTGRKRDGKIVLLFSSNESYKFERAMEDY 635
>gi|256274143|gb|EEU09053.1| Mph1p [Saccharomyces cerevisiae JAY291]
Length = 993
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 202/594 (34%), Positives = 300/594 (50%), Gaps = 95/594 (15%)
Query: 77 EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGK 136
EE SF + H ++D +A ++YP N VRDYQ+ I +LF NTL A+PTG+GK
Sbjct: 56 EEIQRDVSFGPT--HHELDYDALSFYVYPTNYEVRDYQYTIVHKSLFQNTLCAIPTGMGK 113
Query: 137 TLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR 196
T IA+ V+ N+FRW KI+F AP+RPLV QQI+AC I GIP + T + + S R
Sbjct: 114 TFIASTVMLNYFRWTKKAKIIFTAPTRPLVAQQIKACLGITGIPSDQTAILLDK-SRKNR 172
Query: 197 ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV 256
W KRVFF TPQV+E D++ G K +VCLVIDEAHRATG+ AY ++ +
Sbjct: 173 EEIWANKRVFFATPQVVENDLKRGVLDPKDIVCLVIDEAHRATGSSAYTNVVKFIDRFNS 232
Query: 257 QLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316
R+LALTATP S + +Q +++NL IS +E R E D+ Y+ RK E IEV + E
Sbjct: 233 SYRLLALTATPASDLEGVQEVVNNLDISKIEIRTEESMDIVKYMKKRKKEKIEVPLLLEI 292
Query: 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGE 375
+I ++ ++P + +G+ + D ++ + K P +P+ IK+
Sbjct: 293 EDIIEQLGMAVKPVLQQAIELGIYEECDPSQINAFKAMQQSQKI--IANPTIPEGIKWRN 350
Query: 376 VEAYFGALITLYHIRRLLSS---HGIRPAYEMLEEKLKQGSFARFMSKNED--------- 423
F L L ++ ++L +GIR + + K + + + K+ +
Sbjct: 351 ----FFILQLLNNVGQMLKRLKIYGIRTFFNYFQNKCTEFTTKYNLKKSTNKIAAEFYYH 406
Query: 424 --IRKVKLLMQQSIS------HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
++ +K + +S HG KL + + L+D F+ K SRVIIF+ R S
Sbjct: 407 PILKNIKNQCENYLSDPKFVGHG----KLQCVRDELMDFFQ-KRGSDSRVIIFTELRESA 461
Query: 476 RDIMNALATIG-DLVKATEFIGQSSGK------------ASKGQSQ-------------- 508
+I+ + ++ D ++ FIGQ+ K A KG+ +
Sbjct: 462 LEIVKFIDSVADDQIRPHIFIGQARAKEGFDEVKYTRKHAPKGRKKVERLHRQEQEKFLE 521
Query: 509 --------------------------------KVQQAVLEKFRAGGYNVIVATSIGEEGL 536
K+Q+ V+ F+ G YNV+V TSIGEEGL
Sbjct: 522 AERTKRAANDKLERSARRTGSSEEAQISGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGL 581
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQF-VELSIEQY 589
DI EVDL+IC+D SP++ IQRMGRTGRK DG+I +F + E ++E Y
Sbjct: 582 DIGEVDLIICYDTTSSPIKNIQRMGRTGRKRDGKIVLLFSSNESYKFERAMEDY 635
>gi|207344252|gb|EDZ71457.1| YIR002Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 993
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 202/594 (34%), Positives = 300/594 (50%), Gaps = 95/594 (15%)
Query: 77 EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGK 136
EE SF + H ++D +A ++YP N VRDYQ+ I +LF NTL A+PTG+GK
Sbjct: 56 EEIQRDVSFGPT--HHELDYDALSFYVYPTNYEVRDYQYTIVHKSLFQNTLCAIPTGMGK 113
Query: 137 TLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR 196
T IA+ V+ N+FRW KI+F AP+RPLV QQI+AC I GIP + T + + S R
Sbjct: 114 TFIASTVMLNYFRWTKKAKIIFTAPTRPLVAQQIKACLGITGIPSDQTAILLDK-SRKNR 172
Query: 197 ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV 256
W KRVFF TPQV+E D++ G K +VCLVIDEAHRATG+ AY ++ +
Sbjct: 173 EEIWANKRVFFATPQVVENDLKRGVLDPKDIVCLVIDEAHRATGSSAYTNVVKFIDRFNS 232
Query: 257 QLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316
R+LALTATP S + +Q +++NL IS +E R E D+ Y+ RK E IEV + E
Sbjct: 233 SYRLLALTATPASDLEGVQEVVNNLDISKIEIRTEESMDIVKYMKKRKKEKIEVPLLLEI 292
Query: 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGE 375
+I ++ ++P + +G+ + D ++ + K P +P+ IK+
Sbjct: 293 EDIIEQLGMAVKPVLQQAIELGIYEECDPSQINAFKAMQQSQKI--IANPTIPEGIKWRN 350
Query: 376 VEAYFGALITLYHIRRLLSS---HGIRPAYEMLEEKLKQGSFARFMSKNED--------- 423
F L L ++ ++L +GIR + + K + + + K+ +
Sbjct: 351 ----FFILQLLNNVGQMLKRLKIYGIRTFFNYFQNKCTEFTTKYNLKKSTNKIAAEFYYH 406
Query: 424 --IRKVKLLMQQSIS------HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
++ +K + +S HG KL + + L+D F+ K SRVIIF+ R S
Sbjct: 407 PILKNIKNQCENYLSDPKFVGHG----KLQCVRDELMDFFQ-KRGSDSRVIIFTELRESA 461
Query: 476 RDIMNALATIG-DLVKATEFIGQSSGK------------ASKGQSQ-------------- 508
+I+ + ++ D ++ FIGQ+ K A KG+ +
Sbjct: 462 LEIVKFIDSVADDQIRPHIFIGQARAKEGFDEVKYTRKHAPKGRKKVERLHRQEQEKFLE 521
Query: 509 --------------------------------KVQQAVLEKFRAGGYNVIVATSIGEEGL 536
K+Q+ V+ F+ G YNV+V TSIGEEGL
Sbjct: 522 AERTKRAANDKLERSARRTGSSEEAQISGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGL 581
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQF-VELSIEQY 589
DI EVDL+IC+D SP++ IQRMGRTGRK DG+I +F + E ++E Y
Sbjct: 582 DIGEVDLIICYDTTSSPIKNIQRMGRTGRKRDGKIVLLFSSNESYKFERAMEDY 635
>gi|6322192|ref|NP_012267.1| Mph1p [Saccharomyces cerevisiae S288c]
gi|731905|sp|P40562.1|MPH1_YEAST RecName: Full=ATP-dependent DNA helicase MPH1; AltName:
Full=Mutator phenotype protein 1
gi|557851|emb|CAA86204.1| unnamed protein product [Saccharomyces cerevisiae]
gi|190406221|gb|EDV09488.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
gi|259147261|emb|CAY80514.1| Mph1p [Saccharomyces cerevisiae EC1118]
gi|285812649|tpg|DAA08548.1| TPA: Mph1p [Saccharomyces cerevisiae S288c]
gi|346228213|gb|AEO21090.1| MPH1 [synthetic construct]
gi|392298724|gb|EIW09820.1| Mph1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 993
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 202/594 (34%), Positives = 300/594 (50%), Gaps = 95/594 (15%)
Query: 77 EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGK 136
EE SF + H ++D +A ++YP N VRDYQ+ I +LF NTL A+PTG+GK
Sbjct: 56 EEIQRDVSFGPT--HHELDYDALSFYVYPTNYEVRDYQYTIVHKSLFQNTLCAIPTGMGK 113
Query: 137 TLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR 196
T IA+ V+ N+FRW KI+F AP+RPLV QQI+AC I GIP + T + + S R
Sbjct: 114 TFIASTVMLNYFRWTKKAKIIFTAPTRPLVAQQIKACLGITGIPSDQTAILLDK-SRKNR 172
Query: 197 ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV 256
W KRVFF TPQV+E D++ G K +VCLVIDEAHRATG+ AY ++ +
Sbjct: 173 EEIWANKRVFFATPQVVENDLKRGVLDPKDIVCLVIDEAHRATGSSAYTNVVKFIDRFNS 232
Query: 257 QLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316
R+LALTATP S + +Q +++NL IS +E R E D+ Y+ RK E IEV + E
Sbjct: 233 SYRLLALTATPASDLEGVQEVVNNLDISKIEIRTEESMDIVKYMKKRKKEKIEVPLLLEI 292
Query: 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGE 375
+I ++ ++P + +G+ + D ++ + K P +P+ IK+
Sbjct: 293 EDIIEQLGMAVKPVLQQAIELGIYEECDPSQINAFKAMQQSQKI--IANPTIPEGIKWRN 350
Query: 376 VEAYFGALITLYHIRRLLSS---HGIRPAYEMLEEKLKQGSFARFMSKNED--------- 423
F L L ++ ++L +GIR + + K + + + K+ +
Sbjct: 351 ----FFILQLLNNVGQMLKRLKIYGIRTFFNYFQNKCTEFTTKYNLKKSTNKIAAEFYYH 406
Query: 424 --IRKVKLLMQQSIS------HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
++ +K + +S HG KL + + L+D F+ K SRVIIF+ R S
Sbjct: 407 PILKNIKNQCENYLSDPKFVGHG----KLQCVRDELMDFFQ-KRGSDSRVIIFTELRESA 461
Query: 476 RDIMNALATIG-DLVKATEFIGQSSGK------------ASKGQSQ-------------- 508
+I+ + ++ D ++ FIGQ+ K A KG+ +
Sbjct: 462 LEIVKFIDSVADDQIRPHIFIGQARAKEGFDEVKYTRKHAPKGRKKVERLHRQEQEKFLE 521
Query: 509 --------------------------------KVQQAVLEKFRAGGYNVIVATSIGEEGL 536
K+Q+ V+ F+ G YNV+V TSIGEEGL
Sbjct: 522 AERTKRAANDKLERSARRTGSSEEAQISGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGL 581
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQF-VELSIEQY 589
DI EVDL+IC+D SP++ IQRMGRTGRK DG+I +F + E ++E Y
Sbjct: 582 DIGEVDLIICYDTTSSPIKNIQRMGRTGRKRDGKIVLLFSSNESYKFERAMEDY 635
>gi|50290717|ref|XP_447791.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690855|sp|Q6FPQ3.1|MPH1_CANGA RecName: Full=ATP-dependent DNA helicase MPH1
gi|49527102|emb|CAG60740.1| unnamed protein product [Candida glabrata]
Length = 1052
Score = 301 bits (771), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 192/566 (33%), Positives = 290/566 (51%), Gaps = 92/566 (16%)
Query: 90 CHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR 149
H Q++ E ++IYP N VRDYQF I + L N L A+PTG+GKT IA+ V+ NFFR
Sbjct: 62 THHQLNEELLHSYIYPTNFEVRDYQFDIVRKGLLQNILCAIPTGMGKTFIASTVMLNFFR 121
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
W KI+F AP+RPLV QQI+AC I GIP + T + + + R W KRVFF T
Sbjct: 122 WTKTAKIIFTAPTRPLVAQQIKACLGITGIPHDQTAILLDK-TRKNREEIWANKRVFFTT 180
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQV+E D++ G K +VCLVIDEAHRATG+YAY ++ + R+LALTATP +
Sbjct: 181 PQVVENDLKRGVLNPKDIVCLVIDEAHRATGSYAYANLVKFINRFNSSYRLLALTATPAT 240
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
+ +Q +++NL IS +E R E D+ Y+ + + + ++ E I ++ I P
Sbjct: 241 DIEGVQEVVNNLNISKIEIRTEESMDIVKYMKKKIKDRVNIQTTVEIENIVEQLGIAILP 300
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPP----PNLPQ-IKFGEVEAYFGALI 384
++ +G+ ++ P +N+ +++ P++P+ IK+ YF L
Sbjct: 301 VLNQAVELGIYES------CPPSAINAFKAMQKSQAIIMNPSIPEGIKW---RNYF-ILQ 350
Query: 385 TLYHIRRLLSS---HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLL---MQQSISHG 438
L H+ ++L +GIR + + K+K+ + + K+ + M Q+I+
Sbjct: 351 LLNHVGQMLKRIKIYGIRTFFSYFQNKVKEFTTKYDLGKSTNKIAAGFYYHPMIQAITKE 410
Query: 439 AQSP----------KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL 488
+ KL + + L F ++P SRVIIF+ R S +I+ + ++ +
Sbjct: 411 CEEKIKDPNFLGHGKLEHLRDELTQFF-YENPFESRVIIFTELRESALEIVKCIDSMENS 469
Query: 489 -VKATEFIGQSSGK------------ASKGQS---------------QKVQQAVLE---- 516
++ FIGQ+ GK KG+ ++ +QA L+
Sbjct: 470 EIRPHIFIGQAKGKEGFDEVKFVRKHGPKGRKKSDREKRLEEERRMDEEKKQAALQEKLE 529
Query: 517 ---------------------------KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA 549
KF++G YNV+V TSIGEEGLDI EVDL+IC+D
Sbjct: 530 RTSRRTGSSEEAQLSGMNQKQQKEVIKKFKSGLYNVLVCTSIGEEGLDIGEVDLIICYDT 589
Query: 550 NVSPLRMIQRMGRTGRKHDGRIPHIF 575
SP++ IQRMGRTGRK DGRI +F
Sbjct: 590 TSSPIKNIQRMGRTGRKRDGRIVLMF 615
>gi|323333071|gb|EGA74472.1| Mph1p [Saccharomyces cerevisiae AWRI796]
Length = 957
Score = 301 bits (771), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 202/594 (34%), Positives = 300/594 (50%), Gaps = 95/594 (15%)
Query: 77 EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGK 136
EE SF + H ++D +A ++YP N VRDYQ+ I +LF NTL A+PTG+GK
Sbjct: 56 EEIQRDVSFGPT--HHELDYDALSFYVYPTNYEVRDYQYTIVHKSLFQNTLCAIPTGMGK 113
Query: 137 TLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR 196
T IA+ V+ N+FRW KI+F AP+RPLV QQI+AC I GIP + T + + S R
Sbjct: 114 TFIASTVMLNYFRWTKKAKIIFTAPTRPLVAQQIKACLGITGIPSDQTAILLDK-SRKNR 172
Query: 197 ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV 256
W KRVFF TPQV+E D++ G K +VCLVIDEAHRATG+ AY ++ +
Sbjct: 173 EEIWANKRVFFATPQVVENDLKRGVLDPKDIVCLVIDEAHRATGSSAYTNVVKFIDRFNS 232
Query: 257 QLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316
R+LALTATP S + +Q +++NL IS +E R E D+ Y+ RK E IEV + E
Sbjct: 233 SYRLLALTATPASDLEGVQEVVNNLDISKIEIRTEESMDIVKYMKKRKKEKIEVPLLLEI 292
Query: 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGE 375
+I ++ ++P + +G+ + D ++ + K P +P+ IK+
Sbjct: 293 EDIIEQLGMAVKPVLQQAIELGIYEECDPSQINAFKAMQQSQKI--IANPTIPEGIKWRN 350
Query: 376 VEAYFGALITLYHIRRLLSS---HGIRPAYEMLEEKLKQGSFARFMSKNED--------- 423
F L L ++ ++L +GIR + + K + + + K+ +
Sbjct: 351 ----FFILQLLNNVGQMLKRLKIYGIRTFFNYFQNKCTEFTTKYNLKKSTNKIAAEFYYH 406
Query: 424 --IRKVKLLMQQSIS------HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
++ +K + +S HG KL + + L+D F+ K SRVIIF+ R S
Sbjct: 407 PILKNIKNQCENYLSDPKFVGHG----KLQCVRDELMDFFQ-KRGSDSRVIIFTELRESA 461
Query: 476 RDIMNALATIG-DLVKATEFIGQSSGK------------ASKGQSQ-------------- 508
+I+ + ++ D ++ FIGQ+ K A KG+ +
Sbjct: 462 LEIVKFIDSVADDQIRPHIFIGQARAKEGFDEVKYTRKHAPKGRKKVERLHRQEQEKFLE 521
Query: 509 --------------------------------KVQQAVLEKFRAGGYNVIVATSIGEEGL 536
K+Q+ V+ F+ G YNV+V TSIGEEGL
Sbjct: 522 AERTKRAANDKLERSARRTGSSEEAQISGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGL 581
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQF-VELSIEQY 589
DI EVDL+IC+D SP++ IQRMGRTGRK DG+I +F + E ++E Y
Sbjct: 582 DIGEVDLIICYDTTSSPIKNIQRMGRTGRKRDGKIVLLFSSNESYKFERAMEDY 635
>gi|406607066|emb|CCH41581.1| fanconi anemia group M protein [Wickerhamomyces ciferrii]
Length = 1307
Score = 300 bits (769), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 193/578 (33%), Positives = 297/578 (51%), Gaps = 90/578 (15%)
Query: 101 TWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160
T+IYP N+ +RDYQ+ I A + N L A+PTG+GKT IA+ V+ N++RWF +GKI+F A
Sbjct: 77 TFIYPSNLEMRDYQYDIIVKAFYKNLLCAIPTGMGKTFIASTVMLNYYRWFKEGKIIFMA 136
Query: 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
P+RPLV QQI+AC + IP T + + + R W +KRVFF TPQV+E D+++G
Sbjct: 137 PTRPLVAQQIQACLGVTDIPSGDTAILLDK-TRKNRPEIWNSKRVFFTTPQVVENDLKTG 195
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDN 280
K +VCLVIDEAHRA GNYAY ++ + R+LALTATP + + +Q +++N
Sbjct: 196 ILNPKEIVCLVIDEAHRARGNYAYTNVVQFVERFNTSYRVLALTATPAADIEGVQEVVNN 255
Query: 281 LYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLL 340
L+IS +E R E D+ Y+ ++ I V + E +I + E I P + + +
Sbjct: 256 LHISQIEIRTEESIDIVKYMKRKETVRINVGLNSEMEDIIELLSEAIDPVLKQANEAHIY 315
Query: 341 QNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFG-----EVEAYFGALITLYHIRRLLSS 395
+ D ++ ++ + P N IK+ +V Y G ++ R L
Sbjct: 316 EVTDPGKINAFQVMQKSQAIIKNPTLN-EGIKWKYYFILQVIGYVGQML------RRLKI 368
Query: 396 HGIRPAYEMLEEKLKQGSFARFMSKNED-----------IRKVKLLMQQSISHGA--QSP 442
+G+R Y + K K+ M K+ + ++K++ + +++ + P
Sbjct: 369 YGVRTFYSYFQNKCKEFRTKYSMGKSTNKTSAGFFYHDALKKIERICDSTLADPSYVSHP 428
Query: 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL-ATIGDLVKATEFIGQSSGK 501
KL M++ L+ F+ K SRVI+F+ R S +I+ + A GD KA FIGQS K
Sbjct: 429 KLEHMIDELMGFFQHN--KKSRVIVFTELRESALEIVKCIDAVAGDECKAHIFIGQSKAK 486
Query: 502 ------------ASKGQS---------------QKVQQ--------------AVLEKFRA 520
A KG+ +K Q+ A E+ +
Sbjct: 487 EGFDEEEYTRKNAPKGRGKQKKQEREEREREALEKKQRDKELSAAERKASRTATSEEAQL 546
Query: 521 GGYN-----------------VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
G N V+VATSIGEEGLDI EVDL+IC+D+ SP++ IQRMGRT
Sbjct: 547 QGMNQKTQKELIKKFKNGDFNVLVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGRT 606
Query: 564 GRKHDGRIPHIF--KPEVQFVELSIEQYVSRGKKVKDD 599
GRK++G++ + E++F + ++E Y K++ D
Sbjct: 607 GRKNNGKVILLLASNEELKF-DQAMEGYAFVQKQIAQD 643
>gi|349578953|dbj|GAA24117.1| K7_Mph1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 993
Score = 299 bits (765), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 201/594 (33%), Positives = 300/594 (50%), Gaps = 95/594 (15%)
Query: 77 EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGK 136
EE SF + H ++D +A ++YP N VRDYQ+ I +L NTL A+PTG+GK
Sbjct: 56 EEIQRDVSFGPT--HHELDYDALSFYVYPTNYEVRDYQYTIVHKSLSQNTLCAIPTGMGK 113
Query: 137 TLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR 196
T IA+ V+ N+FRW KI+F AP+RPLV QQI+AC I GIP + T + + S R
Sbjct: 114 TFIASTVMLNYFRWTKKAKIIFTAPTRPLVAQQIKACLGITGIPSDQTAILLDK-SRKNR 172
Query: 197 ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV 256
W KRVFF TPQV+E D++ G K +VCLVIDEAHRATG+YAY ++ +
Sbjct: 173 EEIWANKRVFFATPQVVENDLKRGVLDPKDIVCLVIDEAHRATGSYAYTNVVKFIDRFNS 232
Query: 257 QLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316
R+LALTATP S + +Q +++NL IS +E R E D+ Y+ RK E IEV + E
Sbjct: 233 SYRLLALTATPASDLEGVQEVVNNLDISKIEIRTEESMDIVKYMKKRKKEKIEVPLLLEI 292
Query: 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGE 375
+I ++ ++P + +G+ + D ++ + K P +P+ IK+
Sbjct: 293 EDIIEQLGIAVKPVLQQAIELGIYEECDPSQINAFKAMQQSQKI--IANPTIPEGIKWRN 350
Query: 376 VEAYFGALITLYHIRRLLSS---HGIRPAYEMLEEKLKQGSFARFMSKNED--------- 423
F L L ++ ++L +GIR + + K + + + K+ +
Sbjct: 351 ----FFILQLLNNVGQMLKRLKIYGIRTFFNYFQNKCTEFTTKYNLKKSTNKIAAEFYYH 406
Query: 424 --IRKVK------LLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
++ +K L + + HG KL + + L++ F+ K SRVIIF+ R S
Sbjct: 407 PILKNIKNQCEIYLSDPKFVGHG----KLQCVRDELMEFFQ-KRGSDSRVIIFTELRESA 461
Query: 476 RDIMNALATIG-DLVKATEFIGQSSGK------------ASKGQSQ-------------- 508
+I+ + ++ D ++ FIGQ+ K A KG+ +
Sbjct: 462 LEIVKFIDSVANDQIRPHIFIGQARAKEGFDEVKYTRKHAPKGRKKVERLHRQEQEKFLE 521
Query: 509 --------------------------------KVQQAVLEKFRAGGYNVIVATSIGEEGL 536
K+Q+ V+ F+ G YNV+V TSIGEEGL
Sbjct: 522 AERTKRAANDKLERSARRTGSSEEAQISGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGL 581
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQF-VELSIEQY 589
DI EVDL+IC+D SP++ IQRMGRTGRK DG+I +F + E ++E Y
Sbjct: 582 DIGEVDLIICYDTTSSPIKNIQRMGRTGRKRDGKIVLLFSSNESYKFERAMEDY 635
>gi|410084042|ref|XP_003959598.1| hypothetical protein KAFR_0K01070 [Kazachstania africana CBS 2517]
gi|372466190|emb|CCF60463.1| hypothetical protein KAFR_0K01070 [Kazachstania africana CBS 2517]
Length = 994
Score = 298 bits (763), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 194/563 (34%), Positives = 285/563 (50%), Gaps = 88/563 (15%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H + E +IYP N VR+YQF I + AL++N L A+PTG+GKT IA+ V+ N+FRW
Sbjct: 69 HHAFNEEELPIYIYPTNYEVREYQFDIVRKALYTNVLCAIPTGMGKTFIASTVMLNYFRW 128
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
KI+F AP+RPLV QQI+AC I GIP T + + + R WK KRVFF TP
Sbjct: 129 TKTAKIIFMAPTRPLVAQQIKACLGITGIPSNETAILLDK-TRKNREEIWKMKRVFFTTP 187
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
QV+E D++ G K +VCLVIDEAHRATG+YAY ++ + RILALTATPG+
Sbjct: 188 QVVENDLKRGVLNPKDIVCLVIDEAHRATGSYAYTNVVKFMDRFVSSYRILALTATPGAA 247
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+ +Q +I+NL IS +E R E D++ Y+ +R+ E I+V + E EI ++ I P
Sbjct: 248 LENVQEVINNLNISKIEIRTEESMDIAKYMKHREKEQIQVALSAEIEEILEQLGIAILPV 307
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYFGALITLYHI 389
++ +G+ + ++ + K P++P+ IK+ F L L H
Sbjct: 308 LNQAVELGIYEECHPSRINAFKAMQLSQKI--IANPSIPEGIKWRN----FFILQLLNHF 361
Query: 390 RRLLSS---HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKV----------KLLMQQSIS 436
+++ +GIR Y + K K+ F + + K+ K +M+Q
Sbjct: 362 GQMMKRIKIYGIRTFYSYFQNKYKE--FTTKFNLGKSTNKIAAGFYFHPILKNVMKQCDK 419
Query: 437 HGAQSPKL---SKMLEVL--VDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG-DLVK 490
+ P+ K+ V ++ F SRVIIF+ R S +I+ + ++ + ++
Sbjct: 420 Y-LNDPQFLGHDKLQHVRDQLETFLVTGRSDSRVIIFTELRESALEIVKCVDSMNKNSIR 478
Query: 491 ATEFIGQSSGKA----------------SKG---------------QSQKVQQAVLEK-- 517
FIGQ+ GK KG + +K +Q LE+
Sbjct: 479 PHIFIGQARGKEDFDEVSFTRKHQPKGRKKGDKLKRKEEEEILQIAKKRKKEQEKLEREG 538
Query: 518 -------------------------FRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
F+ G +NV+V TSIGEEGLDI EVDL+IC+D S
Sbjct: 539 RRTGSSEDAQINGMSQKQQKEVIQQFKNGDFNVLVCTSIGEEGLDIGEVDLIICYDTTSS 598
Query: 553 PLRMIQRMGRTGRKHDGRIPHIF 575
P++ IQRMGRTGRK +G I +F
Sbjct: 599 PIKNIQRMGRTGRKREGHILLLF 621
>gi|255072719|ref|XP_002500034.1| dead box helicase [Micromonas sp. RCC299]
gi|226515296|gb|ACO61292.1| dead box helicase [Micromonas sp. RCC299]
Length = 1778
Score = 298 bits (762), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 196/538 (36%), Positives = 288/538 (53%), Gaps = 67/538 (12%)
Query: 3 ANKIPIEINGDDDDEFDWEAAVREI---DTACQSSKPSTSNSTNFNLCSKANKKPSTCKQ 59
A+++PI++ D D E +I TA QS++ T N ++ ++ P++ +
Sbjct: 205 AHEMPIDL--DHPDAGHHEGDYGDIFGGGTAPQSTRGGTQNGSD-------SRTPASGGR 255
Query: 60 STLDKFFGNLG-PKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAIT 118
+ G LG P QG G V +D AA+T++YP + RDYQ+
Sbjct: 256 ADAGLTPGRLGTPNSQGLVPSEAG---------VMLDPVAAQTYVYPAQLVRRDYQYQAV 306
Query: 119 KTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVG 178
+ AL++N+LV LPTGLGKTLIAAVV+YNF+RWFP GK+VF AP+RPLV QQ AC NI G
Sbjct: 307 RRALYTNSLVCLPTGLGKTLIAAVVMYNFYRWFPQGKVVFLAPTRPLVDQQKAACSNICG 366
Query: 179 IPQEWTIDMTGQI----SPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDE 234
IP E T M G S T+R +FW+TKRVFF TPQ +E DI S C +VC+VIDE
Sbjct: 367 IPTEDTCTMMGSTKKDESGTRR-TFWRTKRVFFCTPQTMENDINSSVCPANEVVCVVIDE 425
Query: 235 AHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQ 294
AHRA GN++Y IR L V+ R LAL+ATPG Q +Q +++ L I ++++++ D+
Sbjct: 426 AHRAKGNHSYVGCIRMLWDRGVKFRTLALSATPGRTVQDVQKVLEALNIGRIDFKSDQDE 485
Query: 295 DVSSYVHNRKI--ELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVD 352
DV + HNRKI EL++ QE E+ ++ +VIRP + + G TL
Sbjct: 486 DVRKHTHNRKIDMELVKATSAQE--EVLEQLRDVIRPILKKAVSTG--------TLGQAS 535
Query: 353 LLNSR---DKFRQAPPPNLPQIKFGEVEA----------YFGALITLYHIRR----LLSS 395
L+ SR ++ P Q+ E A + L Y+I R L
Sbjct: 536 LMMSRFMEGSSKEIPAAYTVQMAQNESRASGANPGQKNWAYNNLCMAYYIARIAEQLTKY 595
Query: 396 HGIRPAYEMLEEKLKQGSFARFMSKNED----IRKVKLLMQQSISHGA-QSPKLSKMLEV 450
+ A + + + + A + N +R VK ++ +GA SPK+ ++ ++
Sbjct: 596 SSPQSAMDYMVQNDHKAFVASLYNDNNPQAPVMRNVKDMLSSMAGNGAHHSPKMVRLEQI 655
Query: 451 LVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL--ATIGDLVKATEFIGQSSGKASKGQ 506
+ HF DP ++RVI+F++FR SV DI+ AL T+G + A +G+ KA GQ
Sbjct: 656 IRKHFAKNDP-NTRVIVFTSFRDSVHDIVRALREVTVGGRIDA---VGEPKKKAENGQ 709
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
VL+ FR G N +VATSIGEEGLDI VDL++ FD V +R IQRMGRTGR DG++
Sbjct: 781 VLDAFRNGTLNTLVATSIGEEGLDIPSVDLIVFFDV-VDTIRTIQRMGRTGRARDGKV 837
>gi|320168067|gb|EFW44966.1| hypothetical protein CAOG_02972 [Capsaspora owczarzaki ATCC 30864]
Length = 1972
Score = 292 bits (748), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 149/368 (40%), Positives = 212/368 (57%), Gaps = 7/368 (1%)
Query: 67 GNLGPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNT 126
G G +P DES + AE + +IYP N +R YQF I ++ALF NT
Sbjct: 23 GKSGTRPMSASPQPHTEDLDESELP-EFAAEYGQDYIYPTNYQLRTYQFDIVRSALFQNT 81
Query: 127 LVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID 186
LV LPTGLGKT IAAVV+YNF+RWFP GK+VF AP++PLV QQ+EAC +I+G+PQ T+
Sbjct: 82 LVCLPTGLGKTFIAAVVMYNFYRWFPTGKVVFMAPTKPLVQQQLEACFSIMGVPQNETVM 141
Query: 187 MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCT 246
MTG + R W+ KR+ FVTPQ+L+ D+ G C + VC+V+DEAH+A G+YAYC
Sbjct: 142 MTGSKAKEYRRETWRCKRILFVTPQILQHDLADGVCNARDFVCVVVDEAHKALGDYAYCQ 201
Query: 247 AIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIE 306
IR ++ + R+LAL+ATPGS ++Q +I NL IS +E R E DV +Y+ RK
Sbjct: 202 VIRHMVRTNRRFRVLALSATPGSNMASVQSVIQNLLISHVEVRTEQSLDVRTYICGRKTR 261
Query: 307 LIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPP- 365
I +++G I + V+ + RL NR+ + ++ L+ R + PP
Sbjct: 262 AIIIQLGDVIANIRAMLLPVLGSWLHRLCDRRAFSNRNPENVTKQQLVAIRKVYMDRPPD 321
Query: 366 ----PNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKN 421
P Q G+V + I+L+H LL +G+RP Y L + + QGS + S+
Sbjct: 322 TPEDPQGYQHSKGQVLGDYAVAISLFHAFELLGKYGVRPFYVYL-KSVAQGSKSGNRSRY 380
Query: 422 EDIRKVKL 429
E + V +
Sbjct: 381 EIVNNVTI 388
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 97/136 (71%), Gaps = 2/136 (1%)
Query: 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG 522
+RV+IFS FR SV++I++ALA +V+A F+GQ++ K SKG +Q+ Q ++ FR+G
Sbjct: 567 TRVMIFSEFRESVQEIIDALADQQPVVRAMAFVGQATTKGSKGLTQEQQLRIMRAFRSGD 626
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFV 582
YN +V+TS+GEEGLD+ VDL++CFD+ SP RM+QRMGRTGRK +G+I + +
Sbjct: 627 YNTLVSTSVGEEGLDVGHVDLIVCFDSQASPTRMVQRMGRTGRKREGQIVMLLYEGAE-- 684
Query: 583 ELSIEQYVSRGKKVKD 598
L+ ++ V R K V+D
Sbjct: 685 ALAYQKSVERQKSVQD 700
>gi|340503267|gb|EGR29872.1| hypothetical protein IMG5_146930 [Ichthyophthirius multifiliis]
Length = 622
Score = 292 bits (748), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 181/491 (36%), Positives = 272/491 (55%), Gaps = 36/491 (7%)
Query: 104 YPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163
Y V R YQF I +T L NTLVALPTGLGKT IAA +++NF+ WFP GKI F AP+R
Sbjct: 50 YSVGKSFRKYQFDIVQTCLKYNTLVALPTGLGKTFIAATIMFNFYVWFPKGKIFFLAPTR 109
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL 223
PLV QQ+E I Q+ I++ G + KR F++ KRVFF TPQ L+ D+Q
Sbjct: 110 PLVSQQMECLKIFEKINQQDIIEIVGNLPTKKRKEFYQNKRVFFQTPQTLDNDLQEKRYE 169
Query: 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYI 283
L +V DEAH+ATG YAY I +L + R+LAL+ATPG++ + IQ ++ NL I
Sbjct: 170 GDNLCLIVFDEAHKATGKYAYTNIINQLEKLHFGYRVLALSATPGNQFEQIQEVLKNLKI 229
Query: 284 STLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNR 343
LE ++E+D+D+ Y+H ++I ++V+ + +I I +I L G++
Sbjct: 230 CKLEVKDENDEDIKKYMHKKQIFPVKVQNNDQINKIQENISNLIFNCYQWLLQQGVVPFY 289
Query: 344 -DYQTLSPVDL-----LNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+ PVD+ + F Q QI+ +E G I L ++ L
Sbjct: 290 IKMKVRQPVDIHRGIFYSIFKNFYQK-----QQIQNDVIEK--GGTIGLTEVQNQLQVKK 342
Query: 398 IRPA---YEMLEEKLKQGSFARF------------MSKNEDIRKVKLLMQQSISHGAQSP 442
A + L+ LK F F + K E+I++++ + Q+ SH P
Sbjct: 343 KNIADKNFSSLKNFLKMEQFQPFQKHKIPTKKESKLQKIENIQEIEDV-QEIESH----P 397
Query: 443 KLSKMLEVLVDHFKTKD--PKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG 500
K +++++LVD F+ + S+ I+F+ R S + L +++ FIGQ++
Sbjct: 398 KSQQLIQILVDQFQNEKNVQNFSKSIVFTQNRNSAFQLKKLLNQSSVYIRSEVFIGQANL 457
Query: 501 KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+G +QK Q V++KF+ YN ++AT IGEEGLDI EVD+++C+D+ SP+RMIQRM
Sbjct: 458 DG-QGMNQKAQIQVIKKFKNNEYNTLIATCIGEEGLDIGEVDVIVCYDSGFSPIRMIQRM 516
Query: 561 GRTGRKHDGRI 571
GRTGRK +G++
Sbjct: 517 GRTGRKREGKV 527
>gi|151553733|gb|AAI49287.1| FANCM protein [Bos taurus]
Length = 373
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 132/271 (48%), Positives = 176/271 (64%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I +TALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 85 AGALWIYPTNCPVRDYQLHIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 144
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 145 FMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGSTQAFTRKEIWSSKRVLFLTPQVMVNDL 204
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ R+LAL+ATPGS + +Q +
Sbjct: 205 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRVLALSATPGSDIKAVQQV 264
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 265 ITNLLIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELEAIQKAYIQILEAFASSLIQR 324
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNL 368
+L +D L+ ++ +RD+FR+ P PN+
Sbjct: 325 NVLMRKDIPNLTKYQIILARDQFRKNPSPNI 355
>gi|145547248|ref|XP_001459306.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427130|emb|CAK91909.1| unnamed protein product [Paramecium tetraurelia]
Length = 712
Score = 287 bits (734), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 182/514 (35%), Positives = 284/514 (55%), Gaps = 60/514 (11%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
+D E+++ WIY + R YQF I ++ + NTLV LPTGLGKT IA++ I NF RWFP
Sbjct: 23 MDEESSQIWIYSLLNEFRLYQFTIVQSTFYYNTLVCLPTGLGKTFIASMAIINFSRWFPK 82
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
GKI F AP+RPLV QQ EA +++ ID G++S R +++F TPQ L
Sbjct: 83 GKIFFLAPTRPLVAQQHEAM-------KKFGID--GKLSKNDRTY---QSQIYFSTPQTL 130
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
+ D+ L++ +V +V+DEAH+ G+YAY ++ L+ RI+AL+ATPG+ +
Sbjct: 131 DNDLNED--LIQNIVLVVLDEAHKGVGDYAYTNIVKRLL---YNTRIIALSATPGNNLEQ 185
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
IQ ++ NL I+ +E R+E D +V Y+ + +E + V + +I + + + ++P +
Sbjct: 186 IQQVVANLRIAKIELRDEYDPEVVPYLKFKAVEKVVVSF--DNCQILDDLNKQMQPLLNI 243
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRD--KFRQAPPPNLPQIKFGE-----VEAYFGALITL 386
+ G+L + S D+ + K R+ + Q + G+ V + L L
Sbjct: 244 ILGFGILPVELIRVCSRADIFSYGACFKLREFLTNSHLQFQIGQQNSNKVFEHLSHLHKL 303
Query: 387 YHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSK 446
+ +++L GI+P + ++M +DI +V PK+ K
Sbjct: 304 SYAKKILLEQGIQP-------------YVKYMEL-DDIEEV-------------HPKIYK 336
Query: 447 MLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQ 506
+ E+ +HF S+VI+F+N R + + + N + + + VKA+ F+GQ+S K G
Sbjct: 337 LKEIFKNHFAN---NQSKVIVFTNSRDNAQLLCNHINQVEN-VKASIFVGQASSKNQAGM 392
Query: 507 SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
QK Q V++KF+ NV+VAT I EEGLDI EVDL+IC+D+ SP+RMIQRMGRTGRK
Sbjct: 393 KQKEQLQVIDKFK-NELNVLVATCIAEEGLDIGEVDLIICYDSGFSPIRMIQRMGRTGRK 451
Query: 567 HDGRIPHIFK--PEVQFVELSIEQYVSRGKKVKD 598
DGRI + E E S+ +Y K++KD
Sbjct: 452 RDGRIIVLLTEGKEAADYEKSVNKYSKLIKELKD 485
>gi|302307440|ref|NP_984107.2| ADR011Cp [Ashbya gossypii ATCC 10895]
gi|442570227|sp|Q75AA7.2|MPH1_ASHGO RecName: Full=ATP-dependent DNA helicase MPH1
gi|299789002|gb|AAS51931.2| ADR011Cp [Ashbya gossypii ATCC 10895]
gi|374107323|gb|AEY96231.1| FADR011Cp [Ashbya gossypii FDAG1]
Length = 1077
Score = 287 bits (734), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 189/560 (33%), Positives = 279/560 (49%), Gaps = 90/560 (16%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H Q+ E T++YP N VR+YQF I ALF N L A+PTG+GKT IA+ V+ N++RW
Sbjct: 73 HHQLRYENLNTYLYPTNYEVREYQFNIVHRALFENVLCAIPTGMGKTFIASTVMLNYYRW 132
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
KI+F AP+RPLV QQI+AC I GIP T + + S R W KRVFF TP
Sbjct: 133 TVGTKIIFTAPTRPLVAQQIKACLGITGIPYNDTAILLDK-SRKHREQIWSEKRVFFATP 191
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
QV+E D++ G K +V LVIDEAHRA G+YAY + + R+LALTATP +
Sbjct: 192 QVVENDLKRGALNPKDVVLLVIDEAHRARGSYAYVELTKFIDRFNTSYRVLALTATPATD 251
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+ +Q ++DNL IS +E R E +D+ Y+ R E + V + E +I ++ I P
Sbjct: 252 LEGVQEVVDNLQISKIELRTEESEDIVRYMKRRDTEEVIVPLIPEIEDIIEQLGIAITPV 311
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPP----PNLPQ-IKFGEVEAYF--GAL 383
+GL Y PV+ +N+ +Q+ ++P+ +K+ + YF L
Sbjct: 312 LKEAVQLGL-----YDDCEPVN-INAFIAMQQSQKILANSSIPEGVKW---KNYFILQLL 362
Query: 384 ITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLL---MQQSISHGAQ 440
+ H+ + L +GI+ Y + K ++ + + K+ + + ++I+ Q
Sbjct: 363 CHVGHMLKRLKIYGIQTFYTYFDNKYREFTTKYGIGKSTNKTAASFYYSSILKNITKTCQ 422
Query: 441 S----------PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD-LV 489
+ KL ++ + L F + SRVIIF+ R S +++ + + D +
Sbjct: 423 AYTANPSFLGHGKLYRVRDELSTFFASAG-DDSRVIIFTELRESALELVKCVDNMNDRFI 481
Query: 490 KATEFIGQSSGKAS---------------------------------------------- 503
+ FIGQ+ GK S
Sbjct: 482 RPHIFIGQAKGKESFDDGEYLRKHAPKGRKKVDRIRRLEEEKRLADEKLRKKEEEKLART 541
Query: 504 ---KGQSQKVQ---------QAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
G S++ Q + V+ F+ G YNV+V TSIGEEGLDI EVD++IC+D
Sbjct: 542 ARRTGSSEEAQISGMTQKQQKEVISLFKKGDYNVLVCTSIGEEGLDIGEVDMIICYDTTS 601
Query: 552 SPLRMIQRMGRTGRKHDGRI 571
SP++ IQRMGRTGRK DGRI
Sbjct: 602 SPIKNIQRMGRTGRKRDGRI 621
>gi|296475200|tpg|DAA17315.1| TPA: Fanconi anemia, complementation group M [Bos taurus]
Length = 348
Score = 283 bits (723), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 129/264 (48%), Positives = 171/264 (64%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I +TALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 85 AGALWIYPTNCPVRDYQLHIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 144
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 145 FMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGSTQAFTRKEIWSSKRVLFLTPQVMVNDL 204
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + CLVIDEAH+A GNYAYC +REL+ R+LAL+ATPGS + +Q +
Sbjct: 205 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRVLALSATPGSDIKAVQQV 264
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
I NL I +E R+E D+ Y H R++E + V +G+E I +++ + S L
Sbjct: 265 ITNLLIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELEAIQKAYIQILEAFASSLIQR 324
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFR 361
+L +D L+ ++ +RD+FR
Sbjct: 325 NVLMRKDIPNLTKYQIILARDQFR 348
>gi|284161344|ref|YP_003399967.1| DEAD/DEAH box helicase [Archaeoglobus profundus DSM 5631]
gi|284011341|gb|ADB57294.1| DEAD/DEAH box helicase domain protein [Archaeoglobus profundus DSM
5631]
Length = 736
Score = 282 bits (721), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 177/467 (37%), Positives = 259/467 (55%), Gaps = 19/467 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ AIT TAL NTLV LPTGLGKT+IA +VI + GK + AP++PLV Q
Sbjct: 17 RSYQIAITATALMRNTLVVLPTGLGKTVIALLVIASRLHN-KGGKALVLAPTKPLVEQHA 75
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ IP + ++G++ P KR W +V TPQV+E D+ SG ++ +V +
Sbjct: 76 NFFRKTLKIPSNEIVALSGEVPPDKRYQLWNKAKVVVSTPQVIENDLISGRISLEDVVHV 135
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DEAHRA GNY+Y + M ILA+TA+PGS + I+ +I NLYI +E R
Sbjct: 136 TFDEAHRAVGNYSYVFIAKAYMEQAKDPLILAITASPGSDIERIEEVIKNLYIEDVEVRT 195
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D+DV Y+H R IE + VEM +E E+ + + E + RL +G+ + LS
Sbjct: 196 ELDEDVKPYIHERAIEWVRVEMPKELKEVRDLLNECVELRLMRLEGLGV----KARGLSK 251
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEML----- 405
+LL ++ + + Q F E + ++ ++H L+ + G+ L
Sbjct: 252 KELLALQEALQSEAYESGDQRLF-EALSVLAEILKIHHAIELIETQGLDALKHYLRRIVV 310
Query: 406 EEKLKQGSFARFMSKNEDIR-KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSR 464
E K + GS A SK+ K K + +++ PKL K+ E++ K K SR
Sbjct: 311 EAKSRGGSRA---SKSIIADPKFKKAVVKALKCEVDHPKLEKLKEIVSSQLKEKP--ESR 365
Query: 465 VIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN 524
+I+F+NFR + I L ++G V A F+GQ++ + +G Q+ Q ++E+FRAG
Sbjct: 366 IIVFTNFRDTAEVISRELQSMG--VPAVRFVGQANRENDRGLRQREQVEIVERFRAGDIK 423
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
V+VATS+GEEGLDI EVDLV+ ++A S +R IQR GRTGRK +GRI
Sbjct: 424 VLVATSVGEEGLDIPEVDLVVFYEAIPSEIRSIQRKGRTGRKKEGRI 470
>gi|240103224|ref|YP_002959533.1| Hef nuclease [Thermococcus gammatolerans EJ3]
gi|239910778|gb|ACS33669.1| Hef, Helicase-associated endonuclease for fork-structured DNA (Hef)
[Thermococcus gammatolerans EJ3]
Length = 801
Score = 278 bits (711), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 169/464 (36%), Positives = 260/464 (56%), Gaps = 13/464 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I N LV LPTGLGKTLIA ++ Y ++ GK++F AP++PL MQ
Sbjct: 12 RVYQEVIYARCKERNCLVVLPTGLGKTLIAMLIADYRLSKY--GGKVLFLAPTKPLAMQH 69
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E+ + +P E +TG++SP KRA W+ V TPQ +E DI +G ++ +V
Sbjct: 70 AESFRRLFNLPPEKINVLTGELSPEKRAELWRKSVVVTATPQTVENDILTGRISLEDVVL 129
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
LV+DEAHRA GNYAY RE + +L LTA+PGS ++ I+ I++NL I +E R
Sbjct: 130 LVVDEAHRAVGNYAYVFIAREYLKTAKHPLVLGLTASPGSDEEKIREIVENLGIERIEVR 189
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
ES DV YVH E + VE+ E+ + E+++ L+ GL+ + +S
Sbjct: 190 TESSPDVKPYVHRIAFEWVRVELPGIYREVRKILREMLKDSLKPLADAGLVSS-PSPDIS 248
Query: 350 PVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
++L + K QA G ++ + + L+H LL + G+ L +KL
Sbjct: 249 KKEVLQAGSKINQAMAKG--DYSAGYLKKHQAKAMKLHHAIELLETQGLTALRNYL-KKL 305
Query: 410 KQ--GSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
++ +R + ++ +RKV L+ Q+ G PK+ K+ +++ + K S++I+
Sbjct: 306 REDRSKSSRELMEDPRMRKVIYLLVQAKELGLDHPKMEKLKDLIKKQLERKP--DSKIIV 363
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+N+R + + I+ L +G V A FIGQ+S +G SQK Q+ VL++F G +NV+V
Sbjct: 364 FTNYRDTGKKIVEELRNLG--VSAERFIGQASRGTDRGMSQKEQKEVLDRFSRGEFNVLV 421
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
ATS+GEEGLD+ EVDLV+ ++ S +R IQR GRTGR G++
Sbjct: 422 ATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHRPGKV 465
>gi|405123629|gb|AFR98393.1| fanconi anemia [Cryptococcus neoformans var. grubii H99]
Length = 1344
Score = 276 bits (706), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 169/500 (33%), Positives = 266/500 (53%), Gaps = 77/500 (15%)
Query: 101 TWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160
T+IYP N P RDYQF I + NTLVALPTGLGKT +A VV+ NF+RWFP GKIVF A
Sbjct: 174 TYIYPTNHPKRDYQFEIIRNCFLDNTLVALPTGLGKTFVAGVVMLNFYRWFPTGKIVFLA 233
Query: 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQS 219
P+RPLV QQIEAC GIP MTG+ K R W+ KRVF+ TPQ L+ D+++
Sbjct: 234 PTRPLVAQQIEACQLSCGIPSNDAAVMTGEGGSRKSRERLWEEKRVFYCTPQTLDNDLKN 293
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIID 279
G + +V +V DEAH+ATGNYAY T + + + RILALTATPG+ + +Q+++D
Sbjct: 294 GAVDPRDIVLVVFDEAHKATGNYAYTTIVAYITAHHPYFRILALTATPGADVEKVQNVVD 353
Query: 280 NLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGL 339
L+IS +E R ++ Y++ + I+ + ++ + + + +RP+ + L
Sbjct: 354 ALHISRIEIREAEAPEIRKYMNTKP--FIKKLVDKDILTERDLDAKRLRPFRITAKKMEL 411
Query: 340 LQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYH--IRRLLSSHG 397
++ P+ +L DK +A + + ++H + ++S+ G
Sbjct: 412 GKSGQRWAFGPLGVL---DKMARA------------MSHLLEFSLGMFHSSLDEMVSTSG 456
Query: 398 IRPAYEMLEEKLKQGSF-ARFMSKNEDIRKVKLLMQQSISH---------GA-QSPKLSK 446
K K G+ A ++ N + ++++ + Q +S GA + PK+ K
Sbjct: 457 ----------KSKAGAGGANSIANNFEFQRLQRDVSQELSSIKIGRNGKTGADRHPKMQK 506
Query: 447 MLEVLVDHFKTKDPK--------HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQS 498
LE+++ HF + + ++R ++F + R V ++++ +L++AT+F+GQ+
Sbjct: 507 ALELMLAHFSQAEEEENTLGQKNNTRAMVFCSLRPCVMELVDMFNEHSNLLRATKFVGQA 566
Query: 499 SGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558
V+TSIGEEGLDI EVD V+ +D ++++Q
Sbjct: 567 H---------------------------VSTSIGEEGLDIGEVDFVVLYDMPKQSIKLLQ 599
Query: 559 RMGRTGRKHDGRIPHIFKPE 578
R+GRTGRK DG I H+ E
Sbjct: 600 RIGRTGRKRDG-IVHVLMSE 618
>gi|390961773|ref|YP_006425607.1| Hef nuclease [Thermococcus sp. CL1]
gi|390520081|gb|AFL95813.1| Hef nuclease [Thermococcus sp. CL1]
Length = 785
Score = 276 bits (706), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 168/466 (36%), Positives = 259/466 (55%), Gaps = 16/466 (3%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I +N LV LPTGLGKTLIA ++ Y R+ GK++F AP++PL +Q
Sbjct: 11 RVYQEVIYARCKETNCLVVLPTGLGKTLIAMLIADYRLSRY--GGKVLFLAPTKPLALQH 68
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E+ I +P E +TG++SP KRA W+ V TPQ +E D+ +G ++ +V
Sbjct: 69 AESFRKIFNLPPEKINVLTGELSPEKRAEVWRESVVITATPQTVENDVLTGRISLEDVVL 128
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
LV+DEAHRA GNYAY +E + +L LTA+PGS ++ I+ I+ NL I +E R
Sbjct: 129 LVVDEAHRAVGNYAYVFIAKEYLKTAKHPLVLGLTASPGSDEEKIREIVRNLGIGRIEVR 188
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
E+ DV YV E ++VE+ E+ + + E+++ L+ L+ +S
Sbjct: 189 TENSPDVKPYVQRIAFEWVKVELPGIYTEVRSLLREMLKESLKPLAQFKLVSTYS-PDIS 247
Query: 350 PVDLLNSRDKF-RQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG---IRPAYEML 405
++L + K R+ N + G + Y + L H LL + G +R + L
Sbjct: 248 KREVLQAGSKINREVAMGNY---ELGRLRMYQAKAVKLQHAIELLETQGLTALRAYLKKL 304
Query: 406 EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRV 465
E K+ +R + ++ +RKV L+ Q+ G PK+ K+ E++ + K +S++
Sbjct: 305 RED-KRTKSSRELMEDPRMRKVIYLLVQAKEMGMDHPKMEKLKELIKKQLERKP--NSKI 361
Query: 466 IIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNV 525
I+F+N+R + R I+ L +G + A FIGQ+S KG SQ+ Q+ LE+F G +NV
Sbjct: 362 IVFTNYRDTGRKIVEELGGLG--ISAERFIGQASRGKDKGMSQRKQKETLERFSRGEFNV 419
Query: 526 IVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+VATS+GEEGLD+ EVDLV+ ++ S +R IQR GRTGR G++
Sbjct: 420 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHRPGKV 465
>gi|413925496|gb|AFW65428.1| hypothetical protein ZEAMMB73_814845 [Zea mays]
Length = 930
Score = 275 bits (702), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 232/724 (32%), Positives = 353/724 (48%), Gaps = 113/724 (15%)
Query: 495 IGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
+G G KGQSQK QQA+L+KFR+G YNV+VATSIGEEGLDI+EVDLVICFDANVSPL
Sbjct: 86 LGVHLGNQLKGQSQKTQQAILKKFRSGVYNVLVATSIGEEGLDIIEVDLVICFDANVSPL 145
Query: 555 RMIQRMGRTGRKHDGR---------------------------------IPHIFKPEVQF 581
RMIQRMGRTGRK++G+ +PH++KPEV++
Sbjct: 146 RMIQRMGRTGRKNEGQELQGYRKKQGDCRTMRKLLHNSERFEYHASPRMVPHVYKPEVKY 205
Query: 582 VELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPTSDSTWRPSLIAFPHF 641
V+L+I++Y+ KK++ +PI K++ A+ +I +YF + WRPSL+AFP F
Sbjct: 206 VKLTIDKYIPHAKKMRVAAKEASPI-PWKMSEADGQMITRYFSVCKEEVWRPSLVAFPRF 264
Query: 642 QALPSRVHKVMHSFR-TGMLIDMMQHLQGLTFSRDDRTFVEDEVSSDKHLGLQTVEPCET 700
Q PS VHKV HSFR T ML D M+ LQ + R + E+ + + VE E
Sbjct: 265 QLYPSVVHKVPHSFRTTDMLTDAMKQLQDPSLFR-----TKCEIPLQEPANVSAVE--EG 317
Query: 701 DERDNFHGTK------KVTDSELSTRTLGTQENHSMPQSCCKSPAAHAYLFGSDFISVDA 754
E + + + D ++ ++ EN S+P S K H + F D+++VD
Sbjct: 318 LEHEGLYAANGNEEMPQECDGLEASSSVVWNENVSVPGSPVKKYPVHTF-FSGDYVTVDR 376
Query: 755 LGKVLIISVPALPFKELSHSKKKRAPDTLLLNHWKQDSSPLKTSD---KNYDELTVQSKA 811
G VLI VP LP ++++ SK ++ + N + + P +++ + E + +
Sbjct: 377 RGSVLITYVPVLP-QKIAFSKDIKS--AVWNNKDQNKAKPYRSAAGVCRTTVEFVLGTNT 433
Query: 812 VEELTTSQAACIKDGALPISRFCRSDALPEKPLDGFEEILDSPVLRRNQLREEDTTDETL 871
+ L + + + PE G + + D+ VL + + E +
Sbjct: 434 DKHLFVDNLSTVAMHS------------PECSWHG-DNVDDNHVLTTVPSKTLTSPREKM 480
Query: 872 DV-NEIKEPLSPDDEYHNDLRDSELSPRLTNLIKSGVVPESPINENGASNNKGRNPDLAS 930
D +K P S ++ D EL+ RLT ++ G+VPESP+ E S
Sbjct: 481 DTPCNVKLPEST----YSYQEDMELNSRLTVYMEEGIVPESPVVE-------------VS 523
Query: 931 PVKLCSIQPSKFASLGKTEKCSKYVRASQGNVSIS---PVNKKIQTPL------------ 975
++L + + F ++ K + NV+ S P+N + L
Sbjct: 524 HLRLEMDEAADFGAVPKRGSPKSRDERAHANVAGSHKGPLNFEKNDQLLCGENEFDGSSR 583
Query: 976 LKMNHTASAGGYSPTSP----IAEETKTPLANLANSSCSRDWRL-SSGDKSENVEPARKF 1030
L M A P P +A T+ N+ S S D++L S GD S +V+ A K+
Sbjct: 584 LYMLDQTRAKTEEPMHPSNVKMATTTRHTPGNMLCDSFSGDYQLRSGGDASGSVQQAPKY 643
Query: 1031 KRLRKVRDCEQNKNSENMKE-NAVAPVVNLARRFLGMSPIQNKHGRG-RKKPMDNMREYI 1088
+RL K D + +S ++ + N+A + P Q KH G ++K + YI
Sbjct: 644 RRLCKYGDKIKRVSSISLDGCDDRFEECNIANK---DRPNQIKHAMGTKRKTKRRLDAYI 700
Query: 1089 EEEAEVSSEAEVSDDEEDDEDNNSYDDSFIDDRMNPT--ATSTQAESSGVDMMAIYRFLL 1146
+EE VS +A VS+DE+D++ + Y+DSFIDD+ PT + Q + DMM YR L
Sbjct: 701 DEEVGVSEDAYVSEDEDDNQSEDKYEDSFIDDQATPTEFTQTEQGDRHNGDMMGFYRQSL 760
Query: 1147 LSLS 1150
+ S
Sbjct: 761 FTQS 764
>gi|297847598|ref|XP_002891680.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337522|gb|EFH67939.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 271 bits (694), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/250 (59%), Positives = 177/250 (70%), Gaps = 26/250 (10%)
Query: 3 ANKIPIEINGDDDDEFDWEAAVREIDTACQSSKPSTSNSTNFNL-----CSKANKKPSTC 57
+++PIE ++D+EFDWEAAV+EID AC + + S+S +F ++ + KP
Sbjct: 19 GSRVPIE-TIEEDEEFDWEAAVKEIDLACLKTS-NASSSFHFTPLAHPPITRNSTKPPVK 76
Query: 58 KQSTLDKFFGNLGPKPQGTEEFNEGSSFDESLCH--------VQIDAEAAKTWIYPVN-- 107
+QSTLDKF KP+ + S+FDE C V ID EAAKTWIYPVN
Sbjct: 77 RQSTLDKFIRRTEHKPEN--QVVSESNFDEFECGGGNDKSPIVGIDPEAAKTWIYPVNGS 134
Query: 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167
VP+RDYQFAIT TALFSNTLVALPTGLGKTLIAAVV+YN+FR FP+GKIVFA PSRPLVM
Sbjct: 135 VPLRDYQFAITNTALFSNTLVALPTGLGKTLIAAVVMYNYFRLFPEGKIVFAVPSRPLVM 194
Query: 168 QQIEACHNIVGIP-------QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
QQIEACHNIVGIP ++WTID+TGQ P+KRA WK+KRVFFVT QVLEKDIQSG
Sbjct: 195 QQIEACHNIVGIPRTFRYIFEKWTIDLTGQTCPSKRAFLWKSKRVFFVTSQVLEKDIQSG 254
Query: 221 TCLMKYLVCL 230
+ Y+ L
Sbjct: 255 DARIYYIEIL 264
>gi|242398676|ref|YP_002994100.1| ATP-dependent RNA helicase, [Thermococcus sibiricus MM 739]
gi|242265069|gb|ACS89751.1| ATP-dependent RNA helicase, putative [Thermococcus sibiricus MM
739]
Length = 772
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 173/471 (36%), Positives = 253/471 (53%), Gaps = 23/471 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I N+LV LPTGLGKTLIA ++ Y ++ GK++ AP++PL +Q
Sbjct: 11 RVYQEVIYAKCKDKNSLVVLPTGLGKTLIAQLIADYRLSKY--GGKVLMLAPTKPLALQH 68
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E+ + IP E +TG+I P KRA W+ V TPQ +E D+ G ++ +V
Sbjct: 69 RESFLKLFNIPDERINTLTGEIPPEKRAEIWRKSVVITATPQTIENDLVVGRITLEDVVL 128
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
LV DEAHRA GNY Y +E M IL LTA+PGS + I+ I+ NL+I +E R
Sbjct: 129 LVFDEAHRAVGNYGYVYIAKEYMRQAKHPVILGLTASPGSDEAKIRSIVKNLFIEHIEVR 188
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
NE+ DV YV + E I+VE+ + EI + +++R L+ GL+ + S
Sbjct: 189 NENSPDVRPYVQGIRFEWIKVELPEIYKEIRKLLRKMLRDSLKPLAEAGLIDDS-----S 243
Query: 350 PVDLLNSRDKFRQAPPPNLPQIK----FGEVEAYFGALITLYHIRRLLSSHGIRPAYEML 405
P + +D + N K G++ Y + L+H LL + G+ L
Sbjct: 244 PD--IPKKDVLKVGQVINAEMAKGNYEIGKLMLYQAKALKLHHAIELLETQGLSALRAYL 301
Query: 406 EEKLKQGSFARFMSKNEDI-----RKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDP 460
++ ++ R S E I +K L+ Q+ G PKL K+ E++ K K
Sbjct: 302 KKLYEESKKGRAKSTKELIQDPRMKKAVALLVQAKELGLDHPKLDKLKELIRSQLKKKP- 360
Query: 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA 520
S++I+F+N+R + + I+ L + D +KA F+GQ+S + KG SQK Q+ VL F
Sbjct: 361 -SSKIIVFTNYRETAKKIVKEL--LEDHIKAVRFVGQASKENDKGLSQKKQKQVLNLFSQ 417
Query: 521 GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
G +NV+VATS+GEEGLD+ EVDLVI ++ S +R IQR GRTGR GR+
Sbjct: 418 GEFNVLVATSVGEEGLDVPEVDLVIFYEPVPSAIRSIQRKGRTGRHKPGRV 468
>gi|223477217|ref|YP_002581470.1| ATP-dependent RNA helicase [Thermococcus sp. AM4]
gi|214032443|gb|EEB73273.1| ATP-dependent RNA helicase [Thermococcus sp. AM4]
Length = 807
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 163/466 (34%), Positives = 258/466 (55%), Gaps = 17/466 (3%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I N LV LPTGLGKTLIA ++ Y ++ GK++F AP++PL MQ
Sbjct: 26 RVYQEVIYARCKERNCLVVLPTGLGKTLIAMLIADYRLSKY--GGKVLFLAPTKPLAMQH 83
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E+ + +P E +TG++SP KRA W+ V TPQ +E D+ +G ++ +V
Sbjct: 84 AESFRKLFNLPPEKINVLTGELSPDKRAELWRKSVVITATPQTIENDLLTGRISLEDVVL 143
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
LV+DEAHRA GNYAY +E + +L LTA+PGS ++ I+ I+ NL I +E R
Sbjct: 144 LVVDEAHRAVGNYAYVFIAKEYLKTAKHPLVLGLTASPGSDEEKIREIVGNLGIERIEIR 203
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
E+ DV YV + ++VE+ ++ + E+++ L+ GL+ + +S
Sbjct: 204 TENSPDVKPYVQRIAFDWVKVELPGIYKDVRKILREMLKDSLKPLADAGLVSSSS-PDIS 262
Query: 350 PVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEML---- 405
++L + K QA G ++ + + L+H LL + G+ L
Sbjct: 263 KREVLQAGSKINQAMAKG--DYSIGYLKKHQAKAMKLHHAIELLETQGLTALRSYLKKLR 320
Query: 406 EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRV 465
E++ K G R + ++ +RKV L+ Q+ G PK+ K+ E++ + K S++
Sbjct: 321 EDRSKSG---RELMEDPRMRKVTYLLVQAKELGLDHPKMEKLKELIRKQLQKKP--DSKI 375
Query: 466 IIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNV 525
I+F+N+R + + I+ L +G + A FIGQ+S +G SQ+ Q+ VL++F G +NV
Sbjct: 376 IVFTNYRDTGKKIVEELQEMG--ISAERFIGQASRGRDRGMSQREQKEVLDRFSRGEFNV 433
Query: 526 IVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+VATS+GEEGLD+ EVDLV+ ++ S +R IQR GRTGR G++
Sbjct: 434 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHRPGKV 479
>gi|57640956|ref|YP_183434.1| Hef nuclease [Thermococcus kodakarensis KOD1]
gi|57159280|dbj|BAD85210.1| helicase-associated endonuclease for fork-structured DNA
[Thermococcus kodakarensis KOD1]
Length = 804
Score = 267 bits (682), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 256/465 (55%), Gaps = 14/465 (3%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I +N LV LPTGLGKTLIA ++ Y ++ GK++ AP++PL +Q
Sbjct: 12 RVYQEVIYARCKEANCLVVLPTGLGKTLIAMLIADYRLSKY--GGKVLMLAPTKPLAVQH 69
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E+ + IP E +TG++SP +RA WK V TPQ +E DI +G ++ +V
Sbjct: 70 AESFKKLFNIPPEKINVLTGELSPKQRAEVWKNSVVITATPQTVENDILTGRISLEDVVL 129
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
LV DEAHRA GNY+Y +E + +L LTA+PGS ++ I+ I+ NL I +E R
Sbjct: 130 LVFDEAHRAVGNYSYVFIAKEYLKTAKHPLVLGLTASPGSDEEKIREIVRNLGIERIEIR 189
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
ES DV YV E ++V++ E+ + + E+++ L+ L+ +S
Sbjct: 190 TESSPDVKPYVQKIAFEWVKVDLPGIYKEVRSILREMLKESLKPLAQFKLVSTYS-PDIS 248
Query: 350 PVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG---IRPAYEMLE 406
++L + K Q + G + + + L H LL + G +R + L+
Sbjct: 249 KKEVLQAGSKINQEVARG--NYELGRLRMHQAKAVKLLHALELLETQGLTALRAYLKKLK 306
Query: 407 EKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVI 466
E + S M ++ +RKV L+ Q+ G PK+ K+ E++ + K S++I
Sbjct: 307 EDKRTKSSKELM-EDPRMRKVIYLLVQAKESGLDHPKMEKLKELVKEQLGKKP--SSKII 363
Query: 467 IFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVI 526
+F+N+R + + I+ L ++G + A FIGQ+S K +G SQ+ Q+ VL++F G +NV+
Sbjct: 364 VFTNYRDTGKKIVEELRSMG--ITAERFIGQASRKDDRGMSQREQKEVLDRFSRGEFNVL 421
Query: 527 VATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
VATS+GEEGLD+ EVDLV+ ++ S +R IQR GRTGR GR+
Sbjct: 422 VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHRPGRV 466
>gi|60593908|pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
gi|60593909|pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
gi|60593910|pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
gi|60593911|pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
gi|60593912|pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
gi|60593913|pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 263 bits (672), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 161/471 (34%), Positives = 264/471 (56%), Gaps = 23/471 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I +N L+ LPTGLGKTLIA ++ Y ++ GK++ AP++PLV+Q
Sbjct: 11 RIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKY--GGKVLMLAPTKPLVLQH 68
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E+ + +P E + +TG+ SP +R+ W +V TPQ +E D+ +G ++ +
Sbjct: 69 AESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSL 128
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
+V DEAHRA GNYAY RE ++ LTA+PGS + I +I+NL I +EYR
Sbjct: 129 IVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYR 188
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
+E+ DV YV + E + V++ + E+ + E++R L+ GLL++ S
Sbjct: 189 SENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES------S 242
Query: 350 PVDLLNSRDKFRQAPPPNLPQIK----FGEVEAYFGALITLYHIRRLLSSHG---IRPAY 402
D + ++ R N K + Y + L+H LL + G +R
Sbjct: 243 SPD-IPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYI 301
Query: 403 EMLEEKLKQGS--FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDP 460
+ L E+ K GS ++ + ++ ++K L+ Q+ G PK+ K+ E++ + + K
Sbjct: 302 KKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRK-- 359
Query: 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA 520
++S++I+F+N+R + + I+N L + D +KA F+GQ+S + +G SQ+ Q+ +L++F
Sbjct: 360 QNSKIIVFTNYRETAKKIVNEL--VKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR 417
Query: 521 GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
G +NV+VATS+GEEGLD+ EVDLV+ ++ S +R IQR GRTGR GR+
Sbjct: 418 GEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRV 468
>gi|154280200|ref|XP_001540913.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150412856|gb|EDN08243.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 999
Score = 263 bits (672), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 155/443 (34%), Positives = 229/443 (51%), Gaps = 67/443 (15%)
Query: 153 DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQV 212
D +IVF AP++PLV QQ+ AC I GIP+ T+ +TG P RA+ W++KRVFF+TPQ
Sbjct: 264 DAQIVFVAPTKPLVSQQVVACFGIAGIPRSQTVMLTGSTGPAIRAAEWQSKRVFFMTPQT 323
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQ 272
L D+++G K +V LVI+EAHRATG YAY
Sbjct: 324 LVNDLKNGHADPKRIVLLVIEEAHRATGGYAY---------------------------- 355
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332
+ L Y + D+ YVH+R IE+ + ++ + + + ++P
Sbjct: 356 ----------VEVLRYERKESLDIREYVHSRNIEIETFDYSEDMIMCMDLFGKSLQPVLD 405
Query: 333 RLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP-NLPQIKFGEVEAYFGALITLYHIRR 391
+L + +D TL+P L +R + ++P N G V A F L +L H
Sbjct: 406 KLRSQNAHWAKDPMTLTPYGLTVARKDWLKSPAGRNANNGLKGMVHAIFSVLSSLAHAID 465
Query: 392 LLSSHGIRPAYEML---EEKLKQGSFARFMSKNEDIRKVKLLM---------QQSISHGA 439
LL HGI P Y L + L G +++ + D K LM + I H
Sbjct: 466 LLKYHGIGPFYRNLVSFQSTLGAGG-SKYQRQIVDDGNFKTLMNRLRMWTNNEDFIGH-- 522
Query: 440 QSPKLSKMLEVLVDHF-----------KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL 488
PKL + V+++HF + P +R+++F++FR S +I+ L G +
Sbjct: 523 --PKLEFLKRVVLNHFMDAEKDGDDSIGNRHPSGTRIMVFAHFRDSAEEIVRVLKRHGPM 580
Query: 489 VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD 548
++ F+GQ++ K S G QK Q ++EKF+ G YN IVATS+GEEGLDI EVDL++C+D
Sbjct: 581 IRPHVFVGQAAAKGSGGMDQKTQLEIIEKFKEGTYNTIVATSVGEEGLDIGEVDLIVCYD 640
Query: 549 ANVSPLRMIQRMGRTGRKHDGRI 571
++ SP+RM+QRMGRTGRK G I
Sbjct: 641 SSASPIRMLQRMGRTGRKRRGNI 663
>gi|375084016|ref|ZP_09731027.1| Hef nuclease [Thermococcus litoralis DSM 5473]
gi|374741315|gb|EHR77742.1| Hef nuclease [Thermococcus litoralis DSM 5473]
Length = 771
Score = 262 bits (670), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 163/472 (34%), Positives = 260/472 (55%), Gaps = 25/472 (5%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I N+LV LPTGLGKTLIA ++ Y ++ GK++ AP++PL +Q
Sbjct: 11 RVYQEVIYAKCKDKNSLVVLPTGLGKTLIAQMIADYRLSKY--GGKVLMLAPTKPLALQH 68
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E+ + +P+E +TG+I P +R W+ + TPQ +E D+ G ++ +V
Sbjct: 69 RESFLKLFDLPEEKINTLTGEIQPERREEIWRKSIIITATPQTIENDLVVGRISLEDVVL 128
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
LV DEAHRA GNYAY +E M IL LTA+PGS + I+ I+ NL+I +E R
Sbjct: 129 LVFDEAHRAVGNYAYVYIAKEYMKQAKHPLILGLTASPGSDEAKIKEIVKNLFIEHIEVR 188
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRD----- 344
E+ DV YV K E + VE+ E+ + E+++ L+ GL+++
Sbjct: 189 TENSPDVKPYVQGIKFEWVRVELPGIYKEVRKILREMLKDSLKPLAEAGLIESASPDVPK 248
Query: 345 YQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG---IRPA 401
+ L ++N+ + N G++ Y + L+H LL + G +R
Sbjct: 249 KEILKAGQIINA-----EMAKGNYD---VGKLMFYQAKALKLHHAIELLETQGLSALRAY 300
Query: 402 YEMLEEKLKQGSF--ARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKD 459
+ L E+ K+G + + +++ ++K L+ Q+ G PKL KM E++ + +K
Sbjct: 301 LKKLYEEAKRGKTKSTKELMQDQRMKKAIALLVQAKELGIDHPKLDKMKELIKEQL-SKK 359
Query: 460 PKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
P S++I+F+N+R + + I+ L + + +K+ F+GQ++ + KG SQK Q+ +L+ F
Sbjct: 360 P-ASKIIVFTNYRETAKKIVKEL--LQEQIKSMRFVGQANKENDKGLSQKKQKQILDLFS 416
Query: 520 AGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
G +NV+VATS+GEEGLD+ EVDLVI ++ S +R IQR GRTGR GR+
Sbjct: 417 QGEFNVLVATSVGEEGLDVPEVDLVIFYEPVPSAIRSIQRRGRTGRHRPGRV 468
>gi|397652338|ref|YP_006492919.1| Hef nuclease [Pyrococcus furiosus COM1]
gi|393189929|gb|AFN04627.1| Hef nuclease [Pyrococcus furiosus COM1]
Length = 763
Score = 262 bits (670), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 161/471 (34%), Positives = 264/471 (56%), Gaps = 23/471 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I +N L+ LPTGLGKTLIA ++ Y ++ GK++ AP++PLV+Q
Sbjct: 11 RIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKY--GGKVLMLAPTKPLVLQH 68
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E+ + +P E + +TG+ SP +R+ W +V TPQ +E D+ +G ++ +
Sbjct: 69 AESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSL 128
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
+V DEAHRA GNYAY RE ++ LTA+PGS + I +I+NL I +EYR
Sbjct: 129 IVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYR 188
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
+E+ DV YV + E + V++ + E+ + E++R L+ GLL++ S
Sbjct: 189 SENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES------S 242
Query: 350 PVDLLNSRDKFRQAPPPNLPQIK----FGEVEAYFGALITLYHIRRLLSSHG---IRPAY 402
D + ++ R N K + Y + L+H LL + G +R
Sbjct: 243 SPD-IPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYI 301
Query: 403 EMLEEKLKQGS--FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDP 460
+ L E+ K GS ++ + ++ ++K L+ Q+ G PK+ K+ E++ + + K
Sbjct: 302 KKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRK-- 359
Query: 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA 520
++S++I+F+N+R + + I+N L + D +KA F+GQ+S + +G SQ+ Q+ +L++F
Sbjct: 360 QNSKIIVFTNYRETAKKIVNEL--VKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR 417
Query: 521 GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
G +NV+VATS+GEEGLD+ EVDLV+ ++ S +R IQR GRTGR GR+
Sbjct: 418 GEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRV 468
>gi|327401630|ref|YP_004342469.1| helicase domain-containing protein [Archaeoglobus veneficus SNP6]
gi|327317138|gb|AEA47754.1| helicase domain protein [Archaeoglobus veneficus SNP6]
Length = 746
Score = 262 bits (669), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 165/464 (35%), Positives = 247/464 (53%), Gaps = 13/464 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ AI TAL NTLV LPTGLGKT +A +VI + GK + AP++PLV Q
Sbjct: 17 RAYQIAIAATALMRNTLVILPTGLGKTAVALLVIASRLHN-EGGKALVLAPTKPLVEQHA 75
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + E I ++G+ P KRA W+ R+ TPQV+E D+ +G +K +V +
Sbjct: 76 SFFRKNLRLNSEEVIALSGETPPEKRAELWEKARLIVSTPQVVENDVLAGRISLKDVVHI 135
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DEAHRA G Y+Y + + +LA+TA+PGS + I+ +I NL I +E R
Sbjct: 136 TFDEAHRAVGEYSYVYIAEKYFEEAKKPLVLAMTASPGSDVERIREVIKNLGIEEIEIRT 195
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D+DV YV +RKIE I+V+M +E + + E ++ +L +G+ + LS
Sbjct: 196 EHDEDVKPYVFSRKIEWIKVDMPEELKAVRQKFEEALKLRFKKLERLGV----TAEGLSK 251
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
+LL ++ QA + E + ++ + H L+ + G+ E L+ ++
Sbjct: 252 KELLALQESL-QAEAAETGDSRLFEAVSVLAEVLKIQHGMELIETQGLDALKEYLKRLIR 310
Query: 411 QGSFARFMSKNEDIRKVKLLM---QQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
+ + I L M ++ A+ PKL K+ EV+ + K SR+I+
Sbjct: 311 EARSKGGSRAAKSIIGDPLFMGAVTKAAGCRAEHPKLEKLKEVVKKQLEEKP--DSRIIV 368
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+NFR + I+ L G + + F+GQ+ KG SQK Q LE+FR+G V+V
Sbjct: 369 FTNFRDTAEVIVEELKKEG--IPVSRFVGQAKRFEKKGMSQKEQVETLERFRSGEIKVLV 426
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
ATS+GEEGLDI DLV+ ++A S +R IQR GRTGR +GRI
Sbjct: 427 ATSVGEEGLDIPSTDLVVFYEAVPSEIRAIQRKGRTGRAREGRI 470
>gi|18978387|ref|NP_579744.1| Hef nuclease [Pyrococcus furiosus DSM 3638]
gi|18894225|gb|AAL82139.1| ATP-dependent RNA helicase, putative [Pyrococcus furiosus DSM 3638]
Length = 764
Score = 262 bits (669), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 161/471 (34%), Positives = 264/471 (56%), Gaps = 23/471 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I +N L+ LPTGLGKTLIA ++ Y ++ GK++ AP++PLV+Q
Sbjct: 12 RIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKY--GGKVLMLAPTKPLVLQH 69
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E+ + +P E + +TG+ SP +R+ W +V TPQ +E D+ +G ++ +
Sbjct: 70 AESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSL 129
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
+V DEAHRA GNYAY RE ++ LTA+PGS + I +I+NL I +EYR
Sbjct: 130 IVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYR 189
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
+E+ DV YV + E + V++ + E+ + E++R L+ GLL++ S
Sbjct: 190 SENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES------S 243
Query: 350 PVDLLNSRDKFRQAPPPNLPQIK----FGEVEAYFGALITLYHIRRLLSSHG---IRPAY 402
D + ++ R N K + Y + L+H LL + G +R
Sbjct: 244 SPD-IPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYI 302
Query: 403 EMLEEKLKQGS--FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDP 460
+ L E+ K GS ++ + ++ ++K L+ Q+ G PK+ K+ E++ + + K
Sbjct: 303 KKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRK-- 360
Query: 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA 520
++S++I+F+N+R + + I+N L + D +KA F+GQ+S + +G SQ+ Q+ +L++F
Sbjct: 361 QNSKIIVFTNYRETAKKIVNEL--VKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR 418
Query: 521 GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
G +NV+VATS+GEEGLD+ EVDLV+ ++ S +R IQR GRTGR GR+
Sbjct: 419 GEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRV 469
>gi|389851479|ref|YP_006353713.1| Hef nuclease [Pyrococcus sp. ST04]
gi|388248785|gb|AFK21638.1| Hef nuclease [Pyrococcus sp. ST04]
Length = 758
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 161/470 (34%), Positives = 259/470 (55%), Gaps = 21/470 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ I N L+ LPTGLGKT+IA ++ R + GK++ AP++PLV+Q
Sbjct: 11 RVYQEVIYAKCKDRNCLIVLPTGLGKTIIAMMIADYRLRKY-GGKVLMLAPTKPLVLQHA 69
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
E +P + + +TG+ SP +RA W +V TPQ +E DI G ++ +V L
Sbjct: 70 ETFRKFFALPSDKIVALTGETSPNERAKAWAKAKVIIATPQTIENDILVGRISLEDVVLL 129
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
+ DEAHRA GNYAY +E + ++ LTA+PGS + I ++DNL I +EYR+
Sbjct: 130 IFDEAHRAVGNYAYVYIAKEYRTQAKNPLVIGLTASPGSTPEKIMEVLDNLGIEHIEYRS 189
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E+ DV YV K E I+VE+ + E+ + E+++ L+ GL+ + SP
Sbjct: 190 ENSPDVKPYVQGIKFEWIKVELPELYKEVRKLLREMLKDALRPLAEAGLI-----DSASP 244
Query: 351 VDLLNSRDKFRQAPPPNLPQIK----FGEVEAYFGALITLYHIRRLLSSHG---IRPAYE 403
+ ++ + N K ++ + + L+H LL + G +R +
Sbjct: 245 D--IPKKEVLKAGQIINEEMAKGNHDLRKLLLFHAMALKLHHAIELLETQGLSALRVYLK 302
Query: 404 MLEEKLKQGS--FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPK 461
L E+ K GS ++ + ++ ++K L+ Q+ G PKL K+ +++ D K K
Sbjct: 303 KLYEEAKSGSTKASKELFADKRMKKAISLLVQAREIGLDHPKLDKLKDLIKDQLKKKP-- 360
Query: 462 HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG 521
S++I+F+N+R + + I+ L+ G +K+ F+GQ++ + KG SQ+ Q+ VL++F G
Sbjct: 361 SSKIIVFTNYRETSKKIVEELSREG--IKSKRFVGQATKENDKGMSQREQKLVLDEFSRG 418
Query: 522 GYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+NV+VATS+GEEGLD+ EVDLV+ ++ S +R IQR GRTGR GR+
Sbjct: 419 EFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHRPGRV 468
>gi|337284763|ref|YP_004624237.1| Hef nuclease [Pyrococcus yayanosii CH1]
gi|334900697|gb|AEH24965.1| Hef nuclease [Pyrococcus yayanosii CH1]
Length = 751
Score = 261 bits (667), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 157/471 (33%), Positives = 253/471 (53%), Gaps = 23/471 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I N L+ LPTGLGKTLIA ++ Y ++ GK++ AP++PLV+Q
Sbjct: 11 RLYQEVIYARCKERNCLIVLPTGLGKTLIAMMIADYRLSKY--GGKVLMLAPTKPLVLQH 68
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E+ + +P E + +TG++ P +RA W +V TPQ +E D+ +G ++ +
Sbjct: 69 AESFRRLFNLPPEKVVALTGEMGPEERARAWARAKVIVATPQTVENDLLTGRINLEDVSL 128
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
LV DEAHRA GNYAY +E ++ LTA+PGS ++ I +I NL I +E R
Sbjct: 129 LVFDEAHRAVGNYAYVFIAKEYRRQARNPLVIGLTASPGSSEEKIMEVIRNLGIEHVEVR 188
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
E DV YVH K E ++VE+ E+ + ++++ L+ GL+ S
Sbjct: 189 TEDSPDVRPYVHGIKFEWVKVELPPLYKEVRKLLRDMLQDALRPLAEAGLID-------S 241
Query: 350 PVDLLNSRDKFRQAPPPNLPQIK----FGEVEAYFGALITLYHIRRLLSSHGIRPAYEML 405
P L ++ R K G + Y + L+H LL + G+ L
Sbjct: 242 PSPDLPKKEVLRAGQIIGEEIAKGNHDLGRLLLYHAMALKLHHAIELLETQGLSALRVYL 301
Query: 406 EEKLKQGSFARFMSKNEDIRKVKL-----LMQQSISHGAQSPKLSKMLEVLVDHFKTKDP 460
++ ++ R + E R +++ L+ Q+ G PK+ K+ E+L + K
Sbjct: 302 KKLYEEAKAGRIKASRELFRDMRMKKAISLLVQARELGLDHPKIDKLKELLREQLDKK-- 359
Query: 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA 520
+ S+VI+F+N+R + + ++ L+ +G +KA F+GQ+S + +G SQ+ Q+A+L+ F
Sbjct: 360 RASKVIVFTNYRETAKKLVEELSRMG--LKARRFVGQASREGDRGMSQREQKAILDAFAR 417
Query: 521 GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
G +NV+VATS+GEEGLD+ EVD+V+ ++ S +R +QR GRTGR GR+
Sbjct: 418 GDFNVLVATSVGEEGLDVPEVDMVVFYEPVPSAIRSVQRRGRTGRHKPGRV 468
>gi|212224218|ref|YP_002307454.1| Hef nuclease [Thermococcus onnurineus NA1]
gi|212009175|gb|ACJ16557.1| helicase-associated endonuclease for fork-structured DNA
[Thermococcus onnurineus NA1]
Length = 789
Score = 261 bits (667), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 166/465 (35%), Positives = 254/465 (54%), Gaps = 14/465 (3%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I SN LV LPTGLGKTLIA ++ Y ++ GK++ AP++PL +Q
Sbjct: 11 RVYQEVIYARCKESNCLVVLPTGLGKTLIAMLIADYRLQKY--GGKVLMLAPTKPLALQH 68
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E+ + IP E +TG++SP R W+ + TPQ +E DI +G ++ +V
Sbjct: 69 AESFKKLFDIPPEKINVLTGELSPKTRQEIWEKSVIITATPQTIENDILTGRISLEDVVL 128
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
LV DEAHRA GNY+Y RE + +L LTA+PGS + I+ II+NL I +E R
Sbjct: 129 LVFDEAHRAVGNYSYVFIAREYLKTAKHPLVLGLTASPGSDEVRIREIINNLGIERIEIR 188
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
ES DV YVH E ++V++ E+ + + +++ L+ L+ + +S
Sbjct: 189 TESSPDVKPYVHRIAFEWVKVDLPGVYKEVRSLLRGMLKESLKPLAQFKLVSSYS-PDIS 247
Query: 350 PVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG---IRPAYEMLE 406
++L + K Q +I G + Y + L H LL + G +R + L
Sbjct: 248 KKEVLQAGSKINQEVARGNYEI--GRLRMYQAKAVKLQHAIELLETQGLTALRAYLKKLR 305
Query: 407 EKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVI 466
E K+ +R + ++ +RKV L+ Q+ G PK+ K+ E++ + K +S++I
Sbjct: 306 ED-KRTKSSRELMEDPRMRKVIYLLVQAKELGIDHPKMEKLKELVKAQLEKKP--NSKII 362
Query: 467 IFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVI 526
+F+N+R + + I+ L + V A FIGQ+S +G SQK Q+ LE+F G ++V+
Sbjct: 363 VFTNYRDTGKKIVEELRAMS--VSAERFIGQASRSNDRGMSQKQQKETLERFSRGEFSVL 420
Query: 527 VATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
VATS+GEEGLD+ EVDLVI ++ S +R IQR GRTGR GR+
Sbjct: 421 VATSVGEEGLDVPEVDLVIFYEPVPSAIRSIQRRGRTGRHRPGRV 465
>gi|116753548|ref|YP_842666.1| Hef nuclease [Methanosaeta thermophila PT]
gi|116664999|gb|ABK14026.1| DEAD/DEAH box helicase domain protein [Methanosaeta thermophila PT]
Length = 749
Score = 260 bits (665), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 165/476 (34%), Positives = 263/476 (55%), Gaps = 23/476 (4%)
Query: 105 PVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164
P V R +Q + AL +TLV +PTGLGKT++A +V+ G+++F AP+RP
Sbjct: 11 PEAVEKRLFQIDLAARALRGSTLVVMPTGLGKTIVALMVM---LARLEKGRVLFLAPTRP 67
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM 224
LV Q ++ P + +TG+ P RA W++ R+ TPQV+E D+ SG +
Sbjct: 68 LVEQHAAFLRRVLTSP-DLVASVTGETDPESRAEIWRSCRIAVSTPQVVENDLLSGRMDL 126
Query: 225 KYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYIS 284
+ + ++ DEAHRA GNYAY +L +TA+PGS+ + I I NL I
Sbjct: 127 RDVSLVIFDEAHRAAGNYAYVYIAERYRREARDPLVLGMTASPGSEAERIAEICANLGIE 186
Query: 285 TLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRD 344
++E ++ESD DV+ +VH+R+IE I+VE+ ++ +I I ++ ++++G+ + D
Sbjct: 187 SIEMKSESDPDVAPFVHHREIEWIKVEVPEQLQKIRGVIDGLVSERMEEINSLGMCRI-D 245
Query: 345 YQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEM 404
+T S +LL+ + +F A Q F + + ++ L H L + G+ +
Sbjct: 246 PRT-SKGELLDLQKRFSSALARGPNQNIFRGI-SLLAEIMKLKHAVELAETQGVSALRQY 303
Query: 405 LEEKLKQGSFARFMSKNEDIRKVKLLMQQSISH--------GAQSPKLSKMLEVLVDHFK 456
LE +L Q + +R SK +L+ I H + PKLS+ LE++ D +
Sbjct: 304 LE-RLAQEARSRGGSKASR----RLIEDPRIQHVLSVLKDIDLEHPKLSRALEIIEDQLE 358
Query: 457 TKDPKHSRVIIFSNFRGSVRDIMNAL-ATIGDLVKATEFIGQSSGKASKGQSQKVQQAVL 515
T SR+I+F+N+R + ++ L A D VK F+GQ+S + +G SQ+ Q +L
Sbjct: 359 TS--PESRIIVFTNYRDTATALLRFLQANASDAVKPVRFVGQASRENDEGLSQRKQSEIL 416
Query: 516 EKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
EKFRAG YNV++ATS+GEEG+DI D+V+ ++ S +R IQR GRTGR GR+
Sbjct: 417 EKFRAGEYNVLIATSVGEEGIDIPSTDMVLFYEPVPSEIRSIQRKGRTGRARTGRV 472
>gi|380741022|tpe|CCE69656.1| TPA: hef nuclease [Pyrococcus abyssi GE5]
Length = 749
Score = 259 bits (662), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 156/471 (33%), Positives = 261/471 (55%), Gaps = 23/471 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I N L+ LPTGLGKT+IA ++ Y ++ GK++ AP++PLV+Q
Sbjct: 11 RLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKY--GGKVLMLAPTKPLVLQH 68
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E +P E + +TG++SP++R W +V TPQ +E D+ +G ++ +V
Sbjct: 69 AETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVENDLLTGKINLEDVVL 128
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
++ DEAHRA GNYAY RE ++ ++ LTA+PGS Q+ I ++ NL I +EYR
Sbjct: 129 VIFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSSQEKILEVLRNLGIEHIEYR 188
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
+E+ DV YV K E I+VE+ E+ + +++R L+ GL+++ +
Sbjct: 189 SENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDMLRDSLKPLAEAGLIES------A 242
Query: 350 PVDLLNSRDKFRQAPPPNLPQIK----FGEVEAYFGALITLYHIRRLLSSHG---IRPAY 402
D L ++ R N K ++ + + L+H LL + G +R
Sbjct: 243 SAD-LPKKEILRAGQIINEETAKGNHDLRKLLLFHAMALKLHHAIELLETQGLSALRVYL 301
Query: 403 EMLEEKLKQGS--FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDP 460
+ L E+ K GS ++ + + ++K L+ Q+ G PK+ + E++ + K+
Sbjct: 302 KKLYEEAKTGSTRASKELFLDRRMKKALALLIQAKELGIDHPKMEVLKELVKEQLSKKE- 360
Query: 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA 520
+S++I+F+N+R + R ++ L G +KA F+GQ++ + +G SQ+ Q+ +L+ F
Sbjct: 361 -NSKIIVFTNYRETARKVVEELTKEG--IKAKRFVGQATKENDRGMSQREQKLILDSFAR 417
Query: 521 GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
G +NV+VATS+GEEGLD+ EVDLV+ ++ S +R +QR GRTGR+ GR+
Sbjct: 418 GEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRV 468
>gi|14520497|ref|NP_125972.1| Hef nuclease [Pyrococcus abyssi GE5]
gi|5457712|emb|CAB49203.1| Putative ATP-dependent ERCC4-like helicase [Pyrococcus abyssi GE5]
Length = 752
Score = 259 bits (662), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 156/471 (33%), Positives = 261/471 (55%), Gaps = 23/471 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I N L+ LPTGLGKT+IA ++ Y ++ GK++ AP++PLV+Q
Sbjct: 14 RLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKY--GGKVLMLAPTKPLVLQH 71
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E +P E + +TG++SP++R W +V TPQ +E D+ +G ++ +V
Sbjct: 72 AETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVENDLLTGKINLEDVVL 131
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
++ DEAHRA GNYAY RE ++ ++ LTA+PGS Q+ I ++ NL I +EYR
Sbjct: 132 VIFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSSQEKILEVLRNLGIEHIEYR 191
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
+E+ DV YV K E I+VE+ E+ + +++R L+ GL+++ +
Sbjct: 192 SENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDMLRDSLKPLAEAGLIES------A 245
Query: 350 PVDLLNSRDKFRQAPPPNLPQIK----FGEVEAYFGALITLYHIRRLLSSHG---IRPAY 402
D L ++ R N K ++ + + L+H LL + G +R
Sbjct: 246 SAD-LPKKEILRAGQIINEETAKGNHDLRKLLLFHAMALKLHHAIELLETQGLSALRVYL 304
Query: 403 EMLEEKLKQGS--FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDP 460
+ L E+ K GS ++ + + ++K L+ Q+ G PK+ + E++ + K+
Sbjct: 305 KKLYEEAKTGSTRASKELFLDRRMKKALALLIQAKELGIDHPKMEVLKELVKEQLSKKE- 363
Query: 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA 520
+S++I+F+N+R + R ++ L G +KA F+GQ++ + +G SQ+ Q+ +L+ F
Sbjct: 364 -NSKIIVFTNYRETARKVVEELTKEG--IKAKRFVGQATKENDRGMSQREQKLILDSFAR 420
Query: 521 GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
G +NV+VATS+GEEGLD+ EVDLV+ ++ S +R +QR GRTGR+ GR+
Sbjct: 421 GEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRV 471
>gi|341583122|ref|YP_004763614.1| Hef nuclease [Thermococcus sp. 4557]
gi|340810780|gb|AEK73937.1| Hef nuclease [Thermococcus sp. 4557]
Length = 778
Score = 259 bits (662), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 162/465 (34%), Positives = 252/465 (54%), Gaps = 14/465 (3%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I ++ LV LPTGLGKTLIA ++ Y R+ GK++ AP++PL +Q
Sbjct: 11 RVYQEVIYARCKETSCLVVLPTGLGKTLIAMLIADYRLSRY--GGKVLMLAPTKPLAIQH 68
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E+ + +P E +TG++SP KR W+ + TPQ +E DI +G ++ +
Sbjct: 69 AESFRRLFNLPHERINVLTGELSPEKRRRVWEESTIITATPQTVENDILTGRISLEDVSL 128
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
LVIDEAHRA G Y+Y RE + +L LTA+PGS I+ I++NL I +E R
Sbjct: 129 LVIDEAHRAVGGYSYVFIAREYLKTARHPLVLGLTASPGSDADKIREIVENLGIEHVEVR 188
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
E+ DV YV + E ++VE+ + E+ + E+++ L+ L+ +S
Sbjct: 189 TEASPDVKPYVQSIAFEWVKVELPEIYKEVRKLLREMLKESLKPLAQFKLVSTYS-PDIS 247
Query: 350 PVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG---IRPAYEMLE 406
++L + K Q +I G + + + L H LL + G +R + L
Sbjct: 248 KREVLQAGSKINQEVARGNYEI--GRLRLHQAKAVKLQHAIELLETQGLTALRTYLKKLR 305
Query: 407 EKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVI 466
E + S + M ++ +RKV L+ Q+ G PK+ ++ E++ + K S+VI
Sbjct: 306 EDKRAKSSKQLM-EDPRMRKVVYLLVQAKESGVDHPKMERLKELVKRQLERKP--DSKVI 362
Query: 467 IFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVI 526
+F+N+R + R I+ L +G + A FIGQ+S KG SQK Q+ VL++F +NV+
Sbjct: 363 VFTNYRDTGRRIVEELEAMG--IAAERFIGQASRGKDKGMSQKKQKEVLDRFSRAEFNVL 420
Query: 527 VATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
VATS+GEEGLD+ EVDLV+ ++ S +R IQR GRTGR G++
Sbjct: 421 VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHRQGKV 465
>gi|288931017|ref|YP_003435077.1| helicase [Ferroglobus placidus DSM 10642]
gi|288893265|gb|ADC64802.1| helicase domain protein [Ferroglobus placidus DSM 10642]
Length = 761
Score = 258 bits (660), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 170/464 (36%), Positives = 254/464 (54%), Gaps = 23/464 (4%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
+ P V R YQ A+ +AL NTLV LPTGLGKT++A +VI + DGK++F AP
Sbjct: 8 LVKPRAVERRSYQLALAASALLKNTLVVLPTGLGKTVVALLVIASRLHKL-DGKVLFLAP 66
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
++PLV Q + I +E + TG+I P KR ++ RV TPQV+E DI SG
Sbjct: 67 TKPLVEQHAFFLKRTLNINEEEIVSFTGEIPPEKRQRMYEKARVIVSTPQVIENDIISGR 126
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+ V V DEAHRA GNY+Y R + ILA+TA+PGS + I+ ++ NL
Sbjct: 127 LTLSDFVLAVFDEAHRAVGNYSYVFIARRFVEESKNPLILAITASPGSDPERIKEVVKNL 186
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
+I +E R E D DV Y+ +KIE ++V+M +E + +VI RL +G
Sbjct: 187 FIENIEIRTEYDPDVRKYIAEKKIEWVKVDMPEELEKAKEAFEKVIEIRLKRLERLGF-- 244
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPA 401
D S +LL ++ + + Q+ + E + ++ +YH L+ + G+ A
Sbjct: 245 --DVDFSSKKELLTLQELVQAQAVESGDQVYY-EASSILAEVLKVYHAVELIETQGVEAA 301
Query: 402 YEMLEEKLKQG-SFARFMSKN--EDIRKVKLLMQQSISHGA----QSPKLSKMLEVLVDH 454
+ L+ LK+G S +KN ED + ++ I A + PK++K++E+L +
Sbjct: 302 KKYLKRLLKEGRSRGSKAAKNLLED-----PVFREGIVRIAKIKDEHPKVNKLMEILEEQ 356
Query: 455 FKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAV 514
F+ K+P SRVI+F+NFR + + L + A++FIGQ+ + G SQK Q V
Sbjct: 357 FE-KNP-DSRVIVFTNFRDTAEKL---LKIVSQKFPASKFIGQAKREEDAGMSQKEQLRV 411
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558
LE FR G V++ATS+GEEGLDI E DLV+ ++A S +R IQ
Sbjct: 412 LEMFRRGDVKVLIATSVGEEGLDIPETDLVVFYEAVPSEIRAIQ 455
>gi|91772921|ref|YP_565613.1| Hef nuclease [Methanococcoides burtonii DSM 6242]
gi|91711936|gb|ABE51863.1| Hef helicase [Methanococcoides burtonii DSM 6242]
Length = 769
Score = 257 bits (657), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 160/474 (33%), Positives = 256/474 (54%), Gaps = 13/474 (2%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P V R YQ + AL + TLV LPTGLGKT++A +VI + + GK + +P+
Sbjct: 21 VKPNTVEQRLYQLDLAGKALSAPTLVVLPTGLGKTIVALLVIASRLQK-TGGKALILSPT 79
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + + IP++ + TG ++P KR WK +V TPQV+E DI +
Sbjct: 80 KPLVEQHAAFLRSTLNIPEDEILTFTGAVAPDKREELWKKGKVIISTPQVIENDILTKRI 139
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + + DEAHRA GNYAY + LA+TA+PGS + I + NLY
Sbjct: 140 SLEDVTHITFDEAHRAVGNYAYTYIAERYFEDAKKPHCLAITASPGSSDEKISEVCTNLY 199
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I ++ + E+D DV+ Y+H +++E V + E E+ + + +V+ +L+ +G +
Sbjct: 200 IRSVAIKTETDPDVTPYIHKKEVEWNHVILPSEMRELKDLLEKVLEDRFQKLTELGY--S 257
Query: 343 RDY-QTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPA 401
Y + S +DLL + K Q + + + ++ + H ++ + GI A
Sbjct: 258 IQYGKKASKMDLLGLQKKL-QGQIREMAEPAVYSALSILAEVMKVSHAVEIVETQGIE-A 315
Query: 402 YEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISH----GAQSPKLSKMLEVLVDHFKT 457
+ +L+ + +R SK L M+Q + PKL+ + +++
Sbjct: 316 LKKYTARLENEATSRTGSKASKRLSDDLYMRQLYKRLEECTTEHPKLAVVKDIVSKELNG 375
Query: 458 KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEK 517
K SRVI+F+N+R + + NAL+ I D ++ +F+GQSS KG +QK Q ++EK
Sbjct: 376 K--PDSRVIVFTNYRDTSEMVTNALSEIKD-IRPVKFVGQSSKFKDKGLTQKQQVEIIEK 432
Query: 518 FRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
F+AG YNV+VATS+ EEGLDI DLV+ ++ S +R IQR GRTGRKH+GR+
Sbjct: 433 FKAGEYNVLVATSVAEEGLDIPATDLVVFYEPVPSEIRSIQRKGRTGRKHEGRV 486
>gi|11499053|ref|NP_070287.1| Hef nuclease [Archaeoglobus fulgidus DSM 4304]
gi|2649107|gb|AAB89786.1| ATP-dependent RNA helicase, putative [Archaeoglobus fulgidus DSM
4304]
Length = 741
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 160/454 (35%), Positives = 254/454 (55%), Gaps = 21/454 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ +I TAL NTLV +PTGLGKT IAA+VI + DGK++F AP++PLV Q
Sbjct: 17 RMYQISIAATALTKNTLVVIPTGLGKTTIAALVIASRL-LNEDGKVLFLAPTKPLVEQHA 75
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
++ + E + ++G++ P KR W+ R+ TPQV+E D+ +G ++ ++ +
Sbjct: 76 RFLKRVLKV--EEIVSLSGEVPPEKRKELWEKARIVVSTPQVVENDLLAGRISLEDVILV 133
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
V DEAHRA GNYAY +E + + ILA+TA+PGS + I +I NL I +E R
Sbjct: 134 VFDEAHRAVGNYAYVFIAKEYLRTAKKPLILAMTASPGSDPERIMEVIQNLGIEAIEVRT 193
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV+ YV ++IE I+V++ +E E+ R+ E I+ RL + + + S
Sbjct: 194 EWDSDVAPYVGKKRIEWIKVDIPEEMKEVKERLKECIKIRFKRLRELWI---EVPENSSK 250
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
DLL ++ QA + + E + ++ L H L+ + G++ L + ++
Sbjct: 251 RDLLALQEAL-QAEAASSQSSEIFEALSILAEIMKLQHAVELIETQGVKAVKSYLRKLVR 309
Query: 411 QGS------FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSR 464
+ + A+ + + +K + + + + PKL K+ E+L + F+ K+P SR
Sbjct: 310 EATSKGGSKAAKSIVGDPIFKKAVIALSKC---KVEHPKLEKLKEILKEQFE-KNP-DSR 364
Query: 465 VIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN 524
VI+F+N+R S ++N L+ + + K F+GQ+S KG QK Q ++KFR G Y
Sbjct: 365 VIVFTNYRDSAEMLVNELSPLFPVAK---FVGQASRDNDKGMRQKEQIETIDKFRRGVYK 421
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558
V+VATS+GEEGLDI DLV+ ++A S +R IQ
Sbjct: 422 VLVATSVGEEGLDIPSTDLVVFYEAVPSEIRAIQ 455
>gi|315230780|ref|YP_004071216.1| ATP-dependent RNA helicase [Thermococcus barophilus MP]
gi|315183808|gb|ADT83993.1| ATP-dependent RNA helicase [Thermococcus barophilus MP]
Length = 770
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 162/469 (34%), Positives = 255/469 (54%), Gaps = 22/469 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I N+L+ LPTGLGKTLIA ++ Y ++ GK++ AP++PL +Q
Sbjct: 11 RVYQEVIYAKCKDKNSLIVLPTGLGKTLIAMMIADYRLSKY--GGKVLMLAPTKPLALQH 68
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E+ + +P E +TG++ P +RA W+ + TPQ E D+ G ++ +V
Sbjct: 69 RESFVRLFNLPPEKINVLTGELPPEQRAKIWERSIIITATPQTTENDLLVGRISLEDVVL 128
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
LV DEAHRA GNYAY +E M IL LTA+PG+ ++ I+ ++ NLYI +E R
Sbjct: 129 LVFDEAHRAVGNYAYVYIAKEYMQQAKHPLILGLTASPGNDEEKIRQVLKNLYIEHVEVR 188
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
ES DV YV + E I+VE+ E+ + E+++ L+ GL+ + S
Sbjct: 189 TESSPDVRPYVQGIRFEWIKVELPGIYKEVRKLLREMLKDTLKPLAEAGLV-----DSYS 243
Query: 350 PVDLLNSRDKFRQAPPPNLPQIK----FGEVEAYFGALITLYHIRRLLSSHG---IRPAY 402
P + +D + N K G++ + + L+H LL + G +R
Sbjct: 244 PD--IPKKDVLKAGQIINAEVAKGNYEIGKLMLHQAKAMKLHHAIELLETQGLTALRAYL 301
Query: 403 EMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462
+ L E+ + S MS + V LL+Q G PK+ K+ E++ + + K +
Sbjct: 302 KRLYEERQTKSNKELMSDPRMKKAVSLLIQAR-DLGLDHPKMDKLKELIKEQLEKKP--N 358
Query: 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG 522
S++I+F+N+R + + I+ L +G +K + F+GQ+S + +G SQK Q+ +L+ F G
Sbjct: 359 SKIIVFTNYRDTAKKIVKELVDMG--IKVSRFVGQASRENDRGMSQKKQKEILDLFSQGI 416
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+NV+VATS+GEEGLD+ EVDLV+ ++ S +R IQR GRTGR GR+
Sbjct: 417 FNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHKPGRV 465
>gi|149237126|ref|XP_001524440.1| hypothetical protein LELG_04412 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451975|gb|EDK46231.1| hypothetical protein LELG_04412 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 536
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 159/426 (37%), Positives = 233/426 (54%), Gaps = 21/426 (4%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H +++ E KT+IYP N+ VRDYQF+I ++A + N LVALPTGLGKT IA+ V+ NF RW
Sbjct: 114 HHEMNFEELKTYIYPTNLEVRDYQFSIVRSAFYHNLLVALPTGLGKTFIASTVMLNFLRW 173
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
FP KIVF AP++PLV QQI+AC +I GIP + + + R W +++VFF TP
Sbjct: 174 FPKSKIVFMAPTKPLVAQQIKACCSITGIPASKVAILLDE-TRKNRGEIWNSRQVFFTTP 232
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
QV+E D+ G K + LVIDEAHRA GNY+Y + L RILALTATP +
Sbjct: 233 QVVENDLAFGLVNPKSISLLVIDEAHRARGNYSYNNVVNFLKRFNDSFRILALTATPAAD 292
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+ +Q++IDNL IS +E R E D+ Y+ +K+ + + E E + + + P
Sbjct: 293 VEGVQNVIDNLMISKVEVRTEDSDDIVKYMKTKKVCRRVLAVLDEIRECIDLLATAVAPV 352
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYF--GALITLY 387
+ GLL D ++ + + R N+P+ +K+ + YF L T+
Sbjct: 353 LKSANEKGLLDVTDPTRINAFKCMEASR--RLLANKNVPEGLKWAQ---YFILQLLGTVG 407
Query: 388 HIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK-----------NEDIRKVKLLMQQSIS 436
R L+ +G+ Y +EK K+ + K +E I+K+ ++ IS
Sbjct: 408 QCYRRLNIYGVNSFYSYFQEKHKEFTAKWNSKKSKNKLNADFYFSEPIKKLLEAREKVIS 467
Query: 437 HGAQS-PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFI 495
+ A S PK+ ++E L D F+ KD SRVIIF+ FR S +I+ A+ + K FI
Sbjct: 468 NQAYSHPKIEALMEELEDFFQAKDTSSSRVIIFTEFRESALEIVKAIENAKNGSKPHIFI 527
Query: 496 GQSSGK 501
GQ+ K
Sbjct: 528 GQAKEK 533
>gi|409095334|ref|ZP_11215358.1| Hef nuclease [Thermococcus zilligii AN1]
Length = 796
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 160/467 (34%), Positives = 253/467 (54%), Gaps = 19/467 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I N LV LPTGLGKTLIA ++ Y ++ GK++ AP++PL +Q
Sbjct: 12 RVYQEVIYARCKERNCLVVLPTGLGKTLIAMLIADYRLSKY--GGKVLMLAPTKPLAVQH 69
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E+ + +P E +TG++ P KR W+ V TPQ +E D+ +G ++ +V
Sbjct: 70 AESFRRLFDLPPEKINVLTGELPPEKREELWEKSVVITATPQTIENDVLTGGISLEDVVL 129
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
LV DEAHRA GNY+Y +E + +L LTA+PGS ++ I+ II NL I +E R
Sbjct: 130 LVFDEAHRAVGNYSYVFIAKEYLKTAKHPLVLGLTASPGSDEEKIREIIRNLGIEHIEVR 189
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
ES DV YVH E + V++ + E+ + + E+++ L+ GL+ + +
Sbjct: 190 TESSPDVKPYVHGISFEWVGVDLPEIYREVRSILREMLKESLKPLANAGLVSSAS-PDIP 248
Query: 350 PVDLLNSRDKFRQAPPPNLPQI--KFGEVEAYFGALITLYHIRRLLSSHG---IRPAYEM 404
++L + + A L Q G + + + L+H LL + G +R +
Sbjct: 249 KREVLQAGSRINHA----LSQGDHSLGSLMKHQAKAMKLHHAIELLETQGLTALRAYLKK 304
Query: 405 LEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSR 464
L E + S R + ++ +RKV L+ Q+ G PK+ K+ E++ K +S+
Sbjct: 305 LHEDRSRSS--RELMEDPRMRKVVYLLAQAKESGIDHPKMEKLKELIRGQLGRKP--NSK 360
Query: 465 VIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN 524
+I+F+N+R + + I+ L G + FIGQ+S +G SQ+ Q+ +L+KF G ++
Sbjct: 361 IIVFTNYRDTGKKIVEELRREG--ISVERFIGQASRADDRGMSQREQKEILDKFSRGEFS 418
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
V+VATS+GEEGLD+ EVDLVI ++ S +R IQR GRTGR G++
Sbjct: 419 VLVATSVGEEGLDVPEVDLVIFYEPVPSAIRSIQRRGRTGRHRPGKV 465
>gi|289596778|ref|YP_003483474.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|289534565|gb|ADD08912.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
Length = 756
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 170/477 (35%), Positives = 259/477 (54%), Gaps = 28/477 (5%)
Query: 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167
V R+YQ +I K+AL NTLV LPTGLGKT+IA +V+ + GKI+F AP++PLV
Sbjct: 13 VEEREYQVSIAKSALRGNTLVVLPTGLGKTIIAILVLVEVLQK-KGGKILFLAPTKPLVE 71
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYL 227
Q + I E I +TG++S KR + + +V TPQ+++ DI +G +
Sbjct: 72 QHARTIKKLTKI--EDVIVLTGEVSRKKRKELYGSAKVVVATPQIIQNDIIAGELKIGDF 129
Query: 228 VCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLE 287
++ DEAHRA GNYAY ++ IL +TA+PG ++ I II+NL I +E
Sbjct: 130 SLVIFDEAHRAVGNYAYVYIAKKYRKSREDHLILGITASPGGDEEKIMEIIENLGIENVE 189
Query: 288 YRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQT 347
R E D+DV YV KI+ IE+ M E E+ ++ E+ + L GL T
Sbjct: 190 IRTEEDKDVKKYVKGFKIKWIELPMPNEIRELYGKLKELYNSIITELRKFGLFSTLKKPT 249
Query: 348 LSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR-----RLLSSHGIRPAY 402
D+L ++ +Q +IK G+ E Y A++ I+ L + G AY
Sbjct: 250 RR--DVLRAQKIVQQ-------EIKDGKSEFYQAAMLITMAIKIDYALEYLETQGFEAAY 300
Query: 403 EMLEEKLKQGS------FARFMSKNED-IRKVKLLMQQSISHG-AQSPKLSKMLEVLVDH 454
L +++G+ AR + ++E I +K+ + G ++PKL+ L V++
Sbjct: 301 NYLLRIIEEGNSKGGSKAARTLVRDERFIEMMKIARKIEERKGDIENPKLN-ALRVIIRK 359
Query: 455 FKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAV 514
+ + K SR+I+F++FR + + + NAL + V+A F+GQ+S KG QK Q +
Sbjct: 360 -ELAENKDSRIIVFTHFRETAQLVANALNEVPG-VRAARFVGQASKGEDKGLRQKEQVEL 417
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+EKF+ G YNV+VATS+ EEGLDI D+VI ++ S +R IQR GRTGR G++
Sbjct: 418 VEKFKKGEYNVLVATSVAEEGLDIPATDMVIFYEPVPSEIRSIQRRGRTGRARIGKV 474
>gi|424811846|ref|ZP_18237086.1| ERCC4-like helicase [Candidatus Nanosalinarum sp. J07AB56]
gi|339756068|gb|EGQ39651.1| ERCC4-like helicase [Candidatus Nanosalinarum sp. J07AB56]
Length = 741
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 167/464 (35%), Positives = 245/464 (52%), Gaps = 25/464 (5%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ I +A NTLV LPTGLGKT+I A+V DGK++F AP++PL Q
Sbjct: 12 RTYQEVIAASASNLNTLVVLPTGLGKTVIGAMVAA---MKGEDGKVLFLAPTKPLAQQHR 68
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+N++ +P+ +TG + P +R W KR FF TPQV+E DI G ++ L +
Sbjct: 69 RTFNNLLTVPEVDLTLLTGDVRPDERTDLWTQKRFFFATPQVVENDIIDGKVPVEELSLV 128
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
+ DEAHRATG+Y+Y I E P Q++ LALTA+PG ++ I+ + DNL I E R
Sbjct: 129 IFDEAHRATGSYSY-NFISE--QTP-QVQKLALTASPGGSREKIEEVADNLEIDNFELRT 184
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV YV +R++E VE+ E ++ R + +L +G L + +
Sbjct: 185 EDDPDVEPYVQDRELEWRRVELDGRFQEAKKKLGAARRDFLKQLKELGQLNS--VSNVYK 242
Query: 351 VDLLNSR-DKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
DLL R + + P++ E + I + + L + G+ Y KL
Sbjct: 243 TDLLKIRSRISSELSSSDDPELY--EAISLVATAIKVSQAQERLETQGVTQCYRYT-RKL 299
Query: 410 KQ--GSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
KQ A +NED ++ K L++ G + PKL ++ +L D K+ + I+
Sbjct: 300 KQDDSKAAARAQQNEDFQEAKSLVEYLKKEGEEHPKLEELRGILGDM-----EKNEKAIV 354
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+ +R SV I +AL G + +FIGQS G +QK Q+ VL+ F Y+V+V
Sbjct: 355 FTEYRDSVDTITSALQDEG--LSPVKFIGQS---GDDGMTQKKQKEVLDAFEEDHYDVLV 409
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+TSIGEEGLDI VD V+ ++ S +R IQR GRTGR+ G +
Sbjct: 410 STSIGEEGLDIPAVDHVVFYEPVASEIRDIQRAGRTGRQESGNV 453
>gi|408404564|ref|YP_006862547.1| ATP-dependent RNA helicase [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408365160|gb|AFU58890.1| putative ATP-dependent RNA helicase [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 740
Score = 253 bits (646), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 161/476 (33%), Positives = 269/476 (56%), Gaps = 23/476 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ I A NTLV LPT LGKT+IAA+V + + D +++ AP+RPLV Q +
Sbjct: 20 RLYQKNIADAASHKNTLVILPTALGKTMIAALVCADMLYKYRDKRVLMMAPTRPLVSQHL 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTK--RVFFVTPQVLEKDIQSGTCLMKYLV 228
++ ++ I +E +TG+ P R + W + R+ F TP+V+ D++ G +K +
Sbjct: 80 KSFSAVLKIMEEQVAMVTGKTVPEARRAVWDKRDVRLVFATPEVVRNDLEEGRLHLKDFI 139
Query: 229 CLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEY 288
LV DEAHRA +YAY RE + + ILA+TA+PG+K++ IQ + +NLYI +EY
Sbjct: 140 LLVFDEAHRAVKDYAYTAIAREYVGQSMHPVILAMTASPGAKKERIQEVCNNLYIEHVEY 199
Query: 289 RNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLL-QNRDYQT 347
R+E D DV YV+ ++ ++ +E I + + ++ L GLL + +D +
Sbjct: 200 RSEEDGDVKPYVNPIDVKWEWFDLPEEYRYIASVLRSMLDERLKWLVQRGLLGKKKDTRW 259
Query: 348 LSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYF--GALITLYHIRRLLS--SHGIRPAYE 403
+ DL+ + + R + + + A A +TLY + + S +H +R +E
Sbjct: 260 IFKRDLIEAGEALRYRLELTMEEQRGPIYVAIMNQSAALTLYCLELIESQGAHSLRAFFE 319
Query: 404 MLEEKLKQGSFARFMSKNEDIRKVKLLMQQS-ISHGAQSPKLSKMLEVLVDHF------K 456
+EE+ + A + K+ I +V+ L++++ + H PK +++E++ ++
Sbjct: 320 RIEEEGGRAHAA--LLKDPKIMEVRALVEKAPVEH----PKARRIVELVKEYCCGSSDSS 373
Query: 457 TKDPKHSRVIIFSNFRGSVRDIM-NALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVL 515
K + RV++F+ +R + R I+ + L++ G +KA+ F+GQ+ + +G +Q Q AVL
Sbjct: 374 NKQQQKGRVLVFTQYRDTARHIVDDVLSSTG--IKASRFVGQAKRQGDEGMNQDEQAAVL 431
Query: 516 EKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ FR G ++V+VATSI EEGLDI EVDLV+ ++ S +R IQR GRTGRK G +
Sbjct: 432 QSFREGEFDVLVATSIAEEGLDIPEVDLVVFYEPVPSEIRYIQRRGRTGRKAAGSV 487
>gi|300521552|gb|ADK25987.1| ERRC4-type helicase [Candidatus Nitrososphaera gargensis]
Length = 740
Score = 253 bits (646), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 161/477 (33%), Positives = 270/477 (56%), Gaps = 25/477 (5%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ I A NTLV LPT LGKT+IAA+V + + D +++ AP+RPLV Q +
Sbjct: 20 RLYQKNIADAASHKNTLVILPTALGKTMIAALVCADMLYKYRDKRVLMMAPTRPLVSQHL 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTK--RVFFVTPQVLEKDIQSGTCLMKYLV 228
++ ++ I +E +TG+ P R + W + R+ F TP+V+ D++ G +K +
Sbjct: 80 KSFSAVLKIMEEQVAMVTGKTVPEARRAVWDKRDVRLVFATPEVVRNDLEEGRLHLKDFI 139
Query: 229 CLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEY 288
LV DEAHRA +YAY RE + + ILA+TA+PG+K++ IQ + +NLYI +EY
Sbjct: 140 LLVFDEAHRAVKDYAYTAIAREYVGQSMHPVILAMTASPGAKKERIQEVCNNLYIEHVEY 199
Query: 289 RNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLL-QNRDYQT 347
R+E D DV YV+ ++ ++ +E I + + ++ L GLL + +D +
Sbjct: 200 RSEEDGDVKPYVNPIDVKWEWFDLPEEYRYIASVLRSMLDERLKWLVQRGLLGKKKDTRW 259
Query: 348 LSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYF---GALITLYHIRRLLS--SHGIRPAY 402
+ DL+ + + R + + + G + A +TLY + + S +H +R +
Sbjct: 260 IFKRDLIEAGEALRYRLELTMEEQR-GPIYVAIMNQSAALTLYCLELIESQGAHSLRAFF 318
Query: 403 EMLEEKLKQGSFARFMSKNEDIRKVKLLMQQS-ISHGAQSPKLSKMLEVLVDHF------ 455
E +EE+ + A + K+ I +V+ L++++ + H PK +++E++ ++
Sbjct: 319 ERIEEEGGRAHAA--LLKDPKIMEVRALVEKAPVEH----PKARRIVELVKEYCCGSSDS 372
Query: 456 KTKDPKHSRVIIFSNFRGSVRDIM-NALATIGDLVKATEFIGQSSGKASKGQSQKVQQAV 514
K + RV++F+ +R + R I+ + L++ G +KA+ F+GQ+ + +G +Q Q AV
Sbjct: 373 SNKQQQKGRVLVFTQYRDTARHIVDDVLSSTG--IKASRFVGQAKRQGDEGMNQDEQAAV 430
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
L+ FR G ++V+VATSI EEGLDI EVDLV+ ++ S +R IQR GRTGRK G +
Sbjct: 431 LQSFREGEFDVLVATSIAEEGLDIPEVDLVVFYEPVPSEIRYIQRRGRTGRKAAGSV 487
>gi|282162816|ref|YP_003355201.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
gi|282155130|dbj|BAI60218.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
Length = 765
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 163/485 (33%), Positives = 259/485 (53%), Gaps = 36/485 (7%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK-IVFAA 160
I P V R+YQ + +TAL ++L+ LPTGLGKT+IA ++ DGK ++ +
Sbjct: 9 LIKPDTVSSREYQLTLARTALERSSLIVLPTGLGKTIIA---LFVMIERLGDGKKVLMLS 65
Query: 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
P++PLV Q ++ I E TG ++P +R WK RV TPQV+E D+
Sbjct: 66 PTKPLVEQHAAFLRRVLTIDPEQVAVFTGSVAPEQREEVWKRSRVVVSTPQVIENDVLMK 125
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDN 280
++ + ++ DEAHRATG+YAY ++ +L +TA+PGS + I + N
Sbjct: 126 RFDLRDVSLIIFDEAHRATGDYAYVYIAKKYKEQSSDPLVLGITASPGSTPEKINEVKQN 185
Query: 281 LYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLL 340
L I +E + E+D DVS Y++ + +E ++V++ +A EI + ++ RL A+G+L
Sbjct: 186 LSIEHVELKTENDPDVSPYIYEKDVEWVKVDVPDKAAEIKILLDSLMDDRLDRLRAMGVL 245
Query: 341 QNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAY-----FGALITLYHIRRLLSS 395
N L+ +LL + K + + + G E+Y ++ + H L+ +
Sbjct: 246 YN---THLNKKELLMLQAKLQASIS------RGGSPESYKAVSILAEIMKIEHAVDLIQT 296
Query: 396 HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGA---------QSPKLSK 446
G+ P + ++LK+ + ++ SK K LMQ + GA +PK K
Sbjct: 297 QGVVPLKKYF-DRLKEEAGSKGGSK-----ATKRLMQDARLAGAIRVAGTADEVNPKTEK 350
Query: 447 MLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQ 506
+ E++V+ K K SR+I+F+NFR + + LA + + VK F+GQ+S KG
Sbjct: 351 VKEIVVEQLKEK--PSSRIIVFTNFRDTAEFVSRELAAV-EGVKPVRFVGQASKLNDKGL 407
Query: 507 SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
SQK Q +L+ FRAG +N ++ATS+ EEGLDI DLVI ++ S +R IQR GRTGR
Sbjct: 408 SQKKQVEILDAFRAGEFNTLIATSVAEEGLDIPSTDLVIFYEPVPSEIRSIQRRGRTGRN 467
Query: 567 HDGRI 571
GR+
Sbjct: 468 AVGRV 472
>gi|410670654|ref|YP_006923025.1| Hef nuclease [Methanolobus psychrophilus R15]
gi|409169782|gb|AFV23657.1| Hef nuclease [Methanolobus psychrophilus R15]
Length = 759
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 157/478 (32%), Positives = 260/478 (54%), Gaps = 21/478 (4%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
I P V R YQ + +L + TLV LPTGLGKT+IA +VI + GK++ +P+
Sbjct: 18 IRPNAVEQRLYQLDLAGKSLRAPTLVVLPTGLGKTIIALLVIASRLEK-AGGKVLLLSPT 76
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q ++ IP+E + TG SP KR W RV TPQV+E D+ +
Sbjct: 77 KPLVEQHASFLKKVLLIPEEEILVFTGSTSPAKRTELWDKGRVIVSTPQVIENDVLTKRI 136
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + + DEAHRATGNYAY + + + L +TA+PGS ++ I + L+
Sbjct: 137 SLEDVTHITFDEAHRATGNYAYTYIAQRYFQLAMDPLCLGITASPGSSEEKIAEVCQALH 196
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGL-LQ 341
I ++ + ESD+DV+ Y+H ++IE +++ E +I + + +V+ R+ G +
Sbjct: 197 IESVAVKTESDRDVALYIHKKEIEWKRIDLPCEMKDIRDLLNKVLEDRYKRMGEAGYPIN 256
Query: 342 NRDYQTLSPVDLLNSRDK----FRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
N+ Y +S DLL + K R +P P+ + + + ++ + H + + G
Sbjct: 257 NQRY--VSKKDLLAIQQKLQGELRGSPDPS----AYTAI-SIMAEIMKIGHAVEITETQG 309
Query: 398 IRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISH----GAQSPKLSKMLEVLVD 453
+ A M E+L + ++ SK L ++Q+++ + PK+ + ++ +
Sbjct: 310 L-GALRMYMERLDNEACSKNGSKASKRLAEDLYLRQAVNRLKGCDCEHPKMEHVKRIVGE 368
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
+ +P SRVI+F+N+R + I AL+ + ++ F+GQ+S KG +QK Q
Sbjct: 369 QLEG-NP-DSRVIVFANYRDTAEMITTALSGT-EHIRPIRFVGQASKYKDKGLTQKQQVG 425
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
++EKF+AG YN ++ATS+ EEGLDI DLV+ ++ S +R IQR GRTGRKH+GR+
Sbjct: 426 IIEKFKAGEYNTLIATSVAEEGLDIPSTDLVLFYEPIPSEIRSIQRKGRTGRKHEGRV 483
>gi|302838949|ref|XP_002951032.1| hypothetical protein VOLCADRAFT_117719 [Volvox carteri f.
nagariensis]
gi|300263727|gb|EFJ47926.1| hypothetical protein VOLCADRAFT_117719 [Volvox carteri f.
nagariensis]
Length = 480
Score = 249 bits (637), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 131/338 (38%), Positives = 208/338 (61%), Gaps = 9/338 (2%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
+ A A+TW+YP ++PVRDYQF++ ++ALF NTLV LPTGLGKTL+AAVV+ N++RWFPD
Sbjct: 141 LHATHARTWLYPKDLPVRDYQFSLVRSALFHNTLVCLPTGLGKTLVAAVVMLNYYRWFPD 200
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPT--KRASFWKTKRVFFVTPQ 211
GKIVF AP++PLV QQ++AC IP+ + +T P RA+ W +RVFF TPQ
Sbjct: 201 GKIVFVAPTKPLVEQQMKACKEQTCIPKADIVQLTATRGPGGEGRAAEWSQRRVFFCTPQ 260
Query: 212 VLEKDIQSGTCLM-KY-LVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
+LE DI +GTC KY LV LV+DE HRA G A TA++ L S ++ R++ L+ATPGS
Sbjct: 261 ILENDIANGTCPKEKYVLVLLVVDECHRALGKAAPVTALQTLRSEQLRFRVVGLSATPGS 320
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
+++Q +I NL IS +E+++ D DVS Y H ++++++EV + + + ++R
Sbjct: 321 SPESVQEVIRNLGISRVEFKSNEDPDVSPYCHKKQVDVMEVFPDEVLQPVAESVVMLLRG 380
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPN--LPQIKFGEVEAYFGALITLY 387
++L ++ D + + +N +F+ + P N + + ++ F + L
Sbjct: 381 VNAKLLQYRVVDRCDAENVGRFSFINKMKQFQSSLPDNKSMDKSTIPKIYNLFNQAVFLS 440
Query: 388 HIRRLLSSHGIRPAYEMLEEKLKQ---GSFARFMSKNE 422
+ L+S G + A +++ +L + GS +++NE
Sbjct: 441 TLLEHLTSQGAKMAADLVRVELAKNGGGSLRDLVARNE 478
>gi|14591755|ref|NP_143722.1| Hef nuclease [Pyrococcus horikoshii OT3]
Length = 748
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 154/471 (32%), Positives = 257/471 (54%), Gaps = 23/471 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I N L+ LPTGLGKT+IA ++ Y ++ GK++ AP++PLV+Q
Sbjct: 14 RLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLDKY--GGKVLMLAPTKPLVLQH 71
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E +P E + +TG+ISP +R W +V TPQ +E D+ G ++ +
Sbjct: 72 AETFRKFFTLPPEKIVALTGEISPNERVRAWARAKVVIATPQTIENDLLVGRISLEDVTL 131
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
++ DEAHRA GNYAY +E + ++ LTA+PGS + I ++ NL I +EYR
Sbjct: 132 IIFDEAHRAVGNYAYVYIAKEYLKQAKNPHVIGLTASPGSTPEKIMEVLRNLGIEHIEYR 191
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
+E+ DV YV K E ++VE+ + E+ + +++R L+ GLL + +
Sbjct: 192 SENSPDVKPYVQGIKFEWVKVELPELYKEVRKLLRDMLRDSLKPLAEAGLLDS------T 245
Query: 350 PVDLLNSRDKFRQAPPPNLPQIK----FGEVEAYFGALITLYHIRRLLSSHG---IRPAY 402
D + ++ R N K ++ + + L+H LL + G +R
Sbjct: 246 SAD-IPKKEILRAGQIINEEMAKGNHDLRKLLLFHAMALKLHHAIELLETQGLSALRVYL 304
Query: 403 EMLEEKLKQGS--FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDP 460
+ L E+ K GS ++ + ++ ++K L+ Q+ G PK+ + ++ + K K+
Sbjct: 305 KRLYEEAKAGSTRASKELFLDKRMKKALALLIQAKELGIDHPKMEVLKGLIREQLKRKE- 363
Query: 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA 520
+S++I+F+N+R + + ++ L + D +KA F+GQ+S + +G SQK Q+ +L+ F
Sbjct: 364 -NSKIIVFTNYRETAKKVVEEL--MKDGIKARRFVGQASRENDRGMSQKEQKLILDAFAR 420
Query: 521 GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+NV+VATS+GEEGLD+ EVDLVI ++ S +R +QR GRTGR+ GR+
Sbjct: 421 SEFNVLVATSVGEEGLDVPEVDLVIFYEPVPSAIRSVQRRGRTGRQKPGRV 471
>gi|254585207|ref|XP_002498171.1| ZYRO0G03938p [Zygosaccharomyces rouxii]
gi|238941065|emb|CAR29238.1| ZYRO0G03938p [Zygosaccharomyces rouxii]
Length = 1006
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 156/433 (36%), Positives = 226/433 (52%), Gaps = 34/433 (7%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H ++ + ++YP N VRDYQ+ I K ALF N L A+PTG+GKT IA+ V+ NFF W
Sbjct: 68 HHALNEKNLSHYVYPTNYEVRDYQYDIVKKALFQNVLCAIPTGMGKTFIASTVMLNFFLW 127
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
GKI+F AP+RPLV QQI+AC + GIP + T + + S R W TKRVFF TP
Sbjct: 128 TIRGKIIFMAPTRPLVAQQIKACLGMTGIPHDQTAILLDK-SRKNREEIWDTKRVFFTTP 186
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
QV+E D++ G K +VCLVIDEAHRATG+YAY ++ + R+LALTATPG+
Sbjct: 187 QVVENDLKRGALNPKDIVCLVIDEAHRATGSYAYTNVVKFIDRFSTSYRLLALTATPGTD 246
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+++Q +I NL IS +E R E D+ Y+ R E I+VE E +EI ++ I P
Sbjct: 247 LESVQEVIKNLDISKVEIRTEESMDIVKYMKRRIQEKIQVEPLFEMLEIVEQLGIAILPV 306
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYFGALITLYHI 389
+ +G+ +N D ++ + K PN+P+ IK+ F L L H+
Sbjct: 307 LRQAVELGIYENCDPAQINAFKAMQQSQKI--VANPNIPEGIKWRN----FFILQLLNHV 360
Query: 390 RRLLSS---HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQ-------------- 432
++L +GIR Y +K + + M K+ + +
Sbjct: 361 GQMLKRINIYGIRTFYNYFSDKSLEFTTKYGMGKSSNKTAAEFYYHPILKNMTTQCENLL 420
Query: 433 ---QSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG-DL 488
+ + HG KL + + LVD F + SRVIIF+ R S +I+ + +
Sbjct: 421 ADPKFLGHG----KLRHVRDELVDFF-ARGKSDSRVIIFTELRESALEIVRCVDAMDYRH 475
Query: 489 VKATEFIGQSSGK 501
+ FIGQ+ GK
Sbjct: 476 IVPHIFIGQAKGK 488
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 63/88 (71%)
Query: 488 LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
L + + G S + G +QK Q+ V++KF+ G YNV+V TSIGEEGLDI EVDL+IC+
Sbjct: 533 LERVSRRTGSSEEAQANGMTQKQQKEVIQKFKDGEYNVLVCTSIGEEGLDIGEVDLIICY 592
Query: 548 DANVSPLRMIQRMGRTGRKHDGRIPHIF 575
D SP++ IQRMGRTGRK DGRI +F
Sbjct: 593 DTTSSPIKNIQRMGRTGRKRDGRIILLF 620
>gi|302697553|ref|XP_003038455.1| hypothetical protein SCHCODRAFT_34853 [Schizophyllum commune H4-8]
gi|300112152|gb|EFJ03553.1| hypothetical protein SCHCODRAFT_34853, partial [Schizophyllum
commune H4-8]
Length = 533
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 161/243 (66%), Gaps = 7/243 (2%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
WIYP+N P RDYQF I K LF NT+VALPTGLGKT IA VV+ NF+RWFP+GK+VF AP
Sbjct: 1 WIYPLNRPKRDYQFNIVKHCLFDNTIVALPTGLGKTFIAGVVMLNFYRWFPEGKVVFVAP 60
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
++PLV QQIEA H GIP +++TG + R W KRVF++TPQ L D+ GT
Sbjct: 61 TKPLVAQQIEASHKTCGIPGSDAVELTGNVPKAARERAWCEKRVFYMTPQTLLNDLTKGT 120
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
C +V +V+DEAHRATG+YAY +R +M+ R+LALTATPGS + +Q++ID L
Sbjct: 121 CEALDIVLIVVDEAHRATGDYAYNQVVRYMMAKNPHFRLLALTATPGSTPEAVQNLIDGL 180
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI------W-EVIRPYTSRL 334
+IS +E R+E+ D+ Y+H +KIE ++M +I + + W V +TSRL
Sbjct: 181 HISNIEIRDENSIDLRQYIHEKKIEQHIIQMDANIRKIRDPLARLMTNWARVPLMHTSRL 240
Query: 335 SAI 337
+ I
Sbjct: 241 ARI 243
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 101/154 (65%), Gaps = 18/154 (11%)
Query: 442 PKLSKMLEVLVDHFK----------TKDPKH------SRVIIFSNFRGSVRDIMNALATI 485
PK+ K+ +++DHF ++ H SRV++F FR +V +I++AL
Sbjct: 337 PKMEKVKSIIIDHFAQEMAENEGRDVENEAHNAAKIESRVMVFVTFREAVEEIVDALNFE 396
Query: 486 GDLVKATEFIGQS-SGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
L++AT+F+GQ K KG +QK Q A +EKF+AG YNV+VATSIGEEGLDI EVDL+
Sbjct: 397 RPLIRATKFVGQGLDKKGGKGLAQKEQLATVEKFKAGEYNVLVATSIGEEGLDIGEVDLI 456
Query: 545 ICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPE 578
+C+DA +P+RM+QR+GRTGRK G + H+ E
Sbjct: 457 VCYDAQKTPIRMLQRLGRTGRKRAG-VVHVLLAE 489
>gi|33359440|ref|NP_877878.1| ERCC4-like helicase/ERCC4-type nuclease [Pyrococcus horikoshii OT3]
gi|3258336|dbj|BAA31019.1| 650aa long hypothetical ATP-dependent RNA helicase [Pyrococcus
horikoshii OT3]
Length = 650
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 154/471 (32%), Positives = 257/471 (54%), Gaps = 23/471 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I N L+ LPTGLGKT+IA ++ Y ++ GK++ AP++PLV+Q
Sbjct: 14 RLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLDKY--GGKVLMLAPTKPLVLQH 71
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E +P E + +TG+ISP +R W +V TPQ +E D+ G ++ +
Sbjct: 72 AETFRKFFTLPPEKIVALTGEISPNERVRAWARAKVVIATPQTIENDLLVGRISLEDVTL 131
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
++ DEAHRA GNYAY +E + ++ LTA+PGS + I ++ NL I +EYR
Sbjct: 132 IIFDEAHRAVGNYAYVYIAKEYLKQAKNPHVIGLTASPGSTPEKIMEVLRNLGIEHIEYR 191
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
+E+ DV YV K E ++VE+ + E+ + +++R L+ GLL + +
Sbjct: 192 SENSPDVKPYVQGIKFEWVKVELPELYKEVRKLLRDMLRDSLKPLAEAGLLDS------T 245
Query: 350 PVDLLNSRDKFRQAPPPNLPQIK----FGEVEAYFGALITLYHIRRLLSSHG---IRPAY 402
D + ++ R N K ++ + + L+H LL + G +R
Sbjct: 246 SAD-IPKKEILRAGQIINEEMAKGNHDLRKLLLFHAMALKLHHAIELLETQGLSALRVYL 304
Query: 403 EMLEEKLKQGS--FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDP 460
+ L E+ K GS ++ + ++ ++K L+ Q+ G PK+ + ++ + K K+
Sbjct: 305 KRLYEEAKAGSTRASKELFLDKRMKKALALLIQAKELGIDHPKMEVLKGLIREQLKRKE- 363
Query: 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA 520
+S++I+F+N+R + + ++ L + D +KA F+GQ+S + +G SQK Q+ +L+ F
Sbjct: 364 -NSKIIVFTNYRETAKKVVEEL--MKDGIKARRFVGQASRENDRGMSQKEQKLILDAFAR 420
Query: 521 GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+NV+VATS+GEEGLD+ EVDLVI ++ S +R +QR GRTGR+ GR+
Sbjct: 421 SEFNVLVATSVGEEGLDVPEVDLVIFYEPVPSAIRSVQRRGRTGRQKPGRV 471
>gi|386002261|ref|YP_005920560.1| Putative ATP-dependent RNA helicase [Methanosaeta harundinacea 6Ac]
gi|357210317|gb|AET64937.1| Putative ATP-dependent RNA helicase [Methanosaeta harundinacea 6Ac]
Length = 788
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 157/478 (32%), Positives = 254/478 (53%), Gaps = 33/478 (6%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R +Q + +AL ++TLV LPTGLGKT++A +V+ GK++F AP++PLV Q
Sbjct: 18 RLFQLELAASALQASTLVVLPTGLGKTVVALMVL---IARLNRGKVLFLAPTKPLVEQHA 74
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
N++ TG+I P +R W+ ++ TPQV+E D+ S ++ + C+
Sbjct: 75 SFLENVLA-DSTIVASFTGEILPERRKEMWEEAKIVVSTPQVIENDLLSRRISLRDVSCI 133
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
+ DEAHRA GNYAY +L +TA+PGS + I+ + N+ + +E +
Sbjct: 134 IFDEAHRAVGNYAYVYIAERYGREGTDRLVLGITASPGSSLERIEEVCGNIGATRIETKT 193
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIG----LLQNRDYQ 346
E+D DVS +VH R+IE+++V + E + + + EV+ L +G L +
Sbjct: 194 EADPDVSPFVHQREIEVVKVAVPPEIQRVRSLLEEVLEERGEALDRLGGSDGLRMPKRMD 253
Query: 347 TLSPVDLLNSRDKFR----QAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAY 402
S +LL+ + + R + P P+L Q + ++ L H L + G+
Sbjct: 254 RTSKKELLDLQKRLRGLIAKNPSPSLYQ-----AVSVLAEVLKLKHAVELAETQGVDSLG 308
Query: 403 EMLEEKLKQGSFARFMSKN-----EDIR---KVKLLMQQSISHGAQSPKLSKMLEVLVDH 454
LE +L + +R SK ED R V L + + H PKL +LE++ +
Sbjct: 309 RYLE-RLASEAESRGGSKAAKRIMEDPRVEEAVGDLARMDVDH----PKLRAVLELVKEQ 363
Query: 455 FKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD-LVKATEFIGQSSGKASKGQSQKVQQA 513
K SR+++F+N+R + +++ L GD +++ F+GQSS + +G SQ+ Q
Sbjct: 364 LTAK--ADSRIMVFTNYRDTASSVLDYLREAGDEIIRPVRFVGQSSRASDEGLSQRRQAE 421
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+L+KFR G YNV++ATS+GEEG+DI DLV+ ++ S +R IQR GRTGR GR+
Sbjct: 422 ILQKFREGAYNVLIATSVGEEGIDIPATDLVLFYEPVPSEIRSIQRKGRTGRARAGRV 479
>gi|435850474|ref|YP_007312060.1| ERCC4-like helicase [Methanomethylovorans hollandica DSM 15978]
gi|433661104|gb|AGB48530.1| ERCC4-like helicase [Methanomethylovorans hollandica DSM 15978]
Length = 750
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/474 (32%), Positives = 250/474 (52%), Gaps = 13/474 (2%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
I P V R YQ + AL+S TL+ LPTGLGKT+++ +VI GK + +P+
Sbjct: 10 IQPDMVEQRLYQLDLAGRALYSPTLIVLPTGLGKTIVSLLVIAARMEKL-GGKALVLSPT 68
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q ++ +P+E I TG ++P KRA WK ++ TPQV+E DI +
Sbjct: 69 KPLVEQHAAFFKKVMNMPEEHIITFTGSVTPQKRADLWKDAKLIVSTPQVIENDIITKRI 128
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
+ + + DEAHRA GNYAY + + +TA+PGS + I + + L+
Sbjct: 129 SLGDVCHITFDEAHRAVGNYAYTYIAEKYFENASNPHCIGITASPGSTDEKISEVCEALH 188
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGL-LQ 341
I ++ + ESD DV Y+H ++IE I++++ ++ EI + +V+ +L+ +G +
Sbjct: 189 IGSVAVKTESDSDVKPYIHKKEIEWIKIDLPKDMSEIKGLLEKVMEERFKKLTELGFPVH 248
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPA 401
N + T DLL + K Q P + ++ + H ++ + G+
Sbjct: 249 NPKFVTKK--DLLGMQKKL-QGELRGAPDSSVYAAISIVAEIMKVGHAVEIIETQGMESL 305
Query: 402 YEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISH----GAQSPKLSKMLEVLVDHFKT 457
+ + E+L+ ++++ SK L M+Q+I + PKL ++ ++
Sbjct: 306 RKYM-ERLEHEAYSKSGSKAAKRLAEDLYMRQAIHRIKDTDIEHPKLDQVRNIVSRQIAG 364
Query: 458 KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEK 517
+ SRVI+F+N+R + + +L ++ D + F+GQSS KG +QK Q ++E
Sbjct: 365 RP--ESRVIVFTNYRDTADMVTASLGSMED-IYPVRFVGQSSKYKDKGLTQKQQVHIIED 421
Query: 518 FRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
F+ G YNV+VATS+ EEGLDI DLV+ ++ S +R IQR GRT RKH GR+
Sbjct: 422 FKKGTYNVLVATSVAEEGLDIPSTDLVVFYEPIPSEIRSIQRKGRTARKHAGRV 475
>gi|315426340|dbj|BAJ47980.1| helicase-associated endonuclease for fork-structured DNA
[Candidatus Caldiarchaeum subterraneum]
gi|315426365|dbj|BAJ48004.1| helicase-associated endonuclease for fork-structured DNA
[Candidatus Caldiarchaeum subterraneum]
gi|343485150|dbj|BAJ50804.1| helicase-associated endonuclease for fork-structured DNA
[Candidatus Caldiarchaeum subterraneum]
Length = 694
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 156/478 (32%), Positives = 252/478 (52%), Gaps = 24/478 (5%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R+YQ ++ + AL NTLV LPT LGKT+IA +V P +I+ AP+
Sbjct: 8 VKPDTIEDREYQRSMVEEALRGNTLVVLPTALGKTVIAELVAAELLHRHPGCRILVMAPT 67
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK--RVFFVTPQVLEKDIQSG 220
+PLV+Q ++ + I ++ I +TG++S + R W + R+ F TPQ D + G
Sbjct: 68 KPLVLQHRQSFLKHLNISEDEGIAITGEVSESVRKMAWGSPSVRIVFSTPQTAFNDYRRG 127
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDN 280
++ LV DE HR+ YAY E + R+L LTA+PGS+++ + ++ N
Sbjct: 128 WIRLEEFALLVFDECHRSRSRYAYTRLASEYVRRCPWPRVLGLTASPGSEEEKVLEVVKN 187
Query: 281 LYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLL 340
L++ + +R E D++VSSY+ K++ + VE+ E E+ I E I L G++
Sbjct: 188 LWVEKIVWRTEEDEEVSSYIPGVKVDWVRVEIPHEYEEVRKAIREAIENRVRHLQRFGVV 247
Query: 341 QNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFG------EVEAYFGALITLYHIRRLLS 394
+ PV+ +N R QA +I G A +++LYH + L+
Sbjct: 248 R-------VPVEHVN-RTILVQAMARIRAEIDSGVKGQNMHYMALISEILSLYHAQELIE 299
Query: 395 SHGIRPAYEMLEEKL-KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVD 453
S I E L E + + R +S +ED RK+ +Q + A PK+ +++ +
Sbjct: 300 SQHIHSLREYLREVMHSELRSHRMLSGSEDFRKI---IQLAAKSQADHPKIEALVQRISQ 356
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
H K R+++F+N R + I++ L +G +A FIG+ GK +Q+ Q
Sbjct: 357 HLSEKP--DDRIMVFANIRNTAEVIVSRLTELG--YRARMFIGKGEGKTGPKMTQQEQIR 412
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+L++FR G +N++VATSIGEEGLDI E VI ++ +S +R IQR GRTGRK G++
Sbjct: 413 LLKEFREGVFNILVATSIGEEGLDIPECGYVIFYEPAISGIRYIQRRGRTGRKLPGKV 470
>gi|383319514|ref|YP_005380355.1| ERCC4-like helicase [Methanocella conradii HZ254]
gi|379320884|gb|AFC99836.1| ERCC4-like helicase [Methanocella conradii HZ254]
Length = 765
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 154/481 (32%), Positives = 257/481 (53%), Gaps = 36/481 (7%)
Query: 105 PVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164
P V R YQ + + AL ++L+ LPTGLGKT+IA +V+ GK + +P++P
Sbjct: 27 PDTVSSRAYQLTLARNALEKSSLIVLPTGLGKTIIALLVM---LERLEKGKALMLSPTKP 83
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM 224
LV Q + IP++ + TG ++P+KR WK R+ TPQV+E D+ + +
Sbjct: 84 LVEQHAAFLKRTLTIPEQVAV-FTGSVAPSKRVDIWKGSRIIVSTPQVIENDLLTKRFDL 142
Query: 225 KYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYIS 284
K + +V DEAHRATG+YAY ++ + +L +TA+PGS + I + NL+I
Sbjct: 143 KDVSLIVFDEAHRATGDYAYVYIAKKYVEQSANPLVLGITASPGSTPEKINEVKQNLFIE 202
Query: 285 TLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRD 344
+E + E D DV+ Y++ + +E + V + +A EI + ++ RL A+G+++
Sbjct: 203 RVEIKTEKDPDVAPYIYEKDVEWVRVNVPDKAAEIKILLDSLMDDRMDRLKALGVVRE-- 260
Query: 345 YQTLSPVDLLNSRDKF-----RQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIR 399
L+ +LL ++K R P + + + ++ + H L+ + G+
Sbjct: 261 -SRLTKKELLMLQEKLQADISRGGSPESYRAV------SILAEIMKIEHAVDLIQTQGVV 313
Query: 400 PAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQ---------SPKLSKMLEV 450
P + E+LK + ++ SK K LMQ + GA +PK K+ E+
Sbjct: 314 PLKKYF-ERLKDEAGSKGGSK-----ATKRLMQDARLAGAMRIADTADEVNPKTEKVKEI 367
Query: 451 LVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKV 510
+++ + ++P SR+I+F+NFR + + LA + + ++ F+GQ+S KG +QK
Sbjct: 368 VLEQIR-ENP-SSRIIVFTNFRDTADFVSKELAKV-EGIRPVRFVGQASKLNDKGLTQKR 424
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
Q +L FR+G +N ++ATS+ EEGLDI DLVI ++ S +R IQR GRTGR GR
Sbjct: 425 QVEILNAFRSGEFNTLIATSVAEEGLDIPSTDLVIFYEPVPSEIRTIQRRGRTGRNAVGR 484
Query: 571 I 571
+
Sbjct: 485 V 485
>gi|330508988|ref|YP_004385416.1| DEAD/DEAH box helicase domain-containing protein [Methanosaeta
concilii GP6]
gi|328929796|gb|AEB69598.1| DEAD/DEAH box helicase domain protein [Methanosaeta concilii GP6]
Length = 762
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 153/472 (32%), Positives = 256/472 (54%), Gaps = 15/472 (3%)
Query: 105 PVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164
P V R +Q + +AL S++L+ +PTGLGKT+IA +V+ G+++F AP++P
Sbjct: 12 PHTVEKRLFQMDLAASALKSSSLIVVPTGLGKTVIALMVL---LARLDKGRVLFLAPTKP 68
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM 224
LV Q ++ E T+ MTG++ P KR + W+ R+ TPQV+E D+ S +
Sbjct: 69 LVEQHAAFLRRVLKDEGEVTM-MTGEMMPEKRKAAWEAARITVSTPQVIENDLLSRRIDL 127
Query: 225 KYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYIS 284
+ + ++ DEAHRA GNYAY +L +TA+PGS+++ I I NL I
Sbjct: 128 EDISLIIFDEAHRAVGNYAYVYIAERYAREGTNPLVLGITASPGSEKEKIAEICTNLSIE 187
Query: 285 TLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRD 344
++ R+E D DV+ +VH+++IE +++ + +E ++I I EV+R L+ +G+ +
Sbjct: 188 NIQTRSEKDSDVAPFVHSKQIEWVKLTVPKELLDIRTAIEEVLRDRIDDLNRLGISPVKI 247
Query: 345 YQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEM 404
+ +LL + + Q F + + ++ LYH L + G +
Sbjct: 248 DPRATKKELLGLQAMLMSSAKRQANQATFKGI-SILAEVLKLYHAIELAETQGTEALLKY 306
Query: 405 LEEKLKQGSFARFMSKN-----EDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKD 459
+ +L+ + +R SK ED K + MQ + PK + + ++L + + K
Sbjct: 307 FQ-RLQGEAISRSGSKASRRIMED-SKFRQAMQALEDLQVEHPKPAMVRKILTEQIEAK- 363
Query: 460 PKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
SR+++F+N+R + ++ L +KA F+GQSS +G SQK Q +L++FR
Sbjct: 364 -PESRIMVFTNYRDTASALIRFLKE-DPKIKAVRFVGQSSRADDEGLSQKKQAEILQRFR 421
Query: 520 AGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
AG YNV++ATS+GEEG+DI D+V+ ++ S +R IQR GRTGR GR+
Sbjct: 422 AGEYNVLIATSVGEEGIDIPATDMVLFYEPVPSEIRSIQRKGRTGRARSGRV 473
>gi|424814351|ref|ZP_18239529.1| ERCC4-like helicase [Candidatus Nanosalina sp. J07AB43]
gi|339757967|gb|EGQ43224.1| ERCC4-like helicase [Candidatus Nanosalina sp. J07AB43]
Length = 730
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 250/470 (53%), Gaps = 31/470 (6%)
Query: 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167
+ R YQ I +A NTLV LPTGLGKT+IA +V + + K++ AP++PL
Sbjct: 9 IESRAYQEVIAASASDRNTLVVLPTGLGKTIIAVMVAS--IKMKENQKVLMMAPTKPLAS 66
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYL 227
Q + + +P + MTG P +R WK ++ FF TPQV+E D+ SG ++
Sbjct: 67 QHCQTFREFLNVPSDQLKVMTGDTRPEERYDLWKDRKGFFATPQVVENDLISGEVPVQNF 126
Query: 228 VCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLE 287
++ DEAHRATG+Y+Y I E M+V + LALTA+PG ++ I + +NL I E
Sbjct: 127 SLVIFDEAHRATGDYSYVF-INEKMNV----QNLALTASPGGSKEQIMEVAENLDIDNFE 181
Query: 288 YRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQT 347
R E D DV Y+ +++ I VE+ + +E +++ R +L ++G L +
Sbjct: 182 VRTEDDPDVEPYIEEKEVNWINVELDDKFMEAKSKMESAKRDQLKKLKSLGQLDST--SN 239
Query: 348 LSPVDLLNSR----DKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYE 403
++ DLL R K + P L + + AL + LL + G+ +E
Sbjct: 240 VNKTDLLKLRGQISSKLSKKDDPKL----YSAISRVATAL-KISQAVELLETQGVSQCFE 294
Query: 404 MLE--EKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPK 461
++ E + +R + +N D++K + L++ + G + PKL K +E+L +
Sbjct: 295 YIDGLENDDSKAASRAL-ENNDMQKARNLIKYLKTEGEEHPKLEKTVEILEGL-----EE 348
Query: 462 HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG 521
+ ++F+ +R SV +I L + + AT FIGQS +G +QK Q +L++FR G
Sbjct: 349 DGKALVFTEYRSSVENITERLRQ--EDIHATRFIGQS---GDQGMTQKQQIELLDEFRDG 403
Query: 522 GYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ V+V+TSIGEEGLDI VD V+ ++ S +R IQR GRTGR+ G +
Sbjct: 404 EHQVVVSTSIGEEGLDIPAVDYVVFYEPVPSSVRSIQRAGRTGRQESGEV 453
>gi|73668740|ref|YP_304755.1| Hef nuclease [Methanosarcina barkeri str. Fusaro]
gi|72395902|gb|AAZ70175.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina barkeri
str. Fusaro]
Length = 938
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 244/479 (50%), Gaps = 23/479 (4%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
I P V R YQ + AL ++LV LPTGLGKT+IA VI + + F GK + +P+
Sbjct: 18 IKPNTVEQRLYQLNLAGKALEGSSLVVLPTGLGKTIIALFVIVSRLQRF-GGKALVLSPT 76
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q ++ +P++ + TG I+P +R W + TPQV+E D+ +
Sbjct: 77 KPLVEQHAAFFKKVMALPEDKILTFTGSIAPAEREKLWAQGELIVSTPQVIENDLLTKRI 136
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + + DEAHRA GNYAY + +L +TA+PGS + I + L+
Sbjct: 137 SLEDVTHITFDEAHRAVGNYAYTFIAEKYFESAKNPHVLGITASPGSSDEKISEVCQALH 196
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I + + E D+DV YV +KIE +V++ E E IR Y ++ L+
Sbjct: 197 IENVSVKTEKDKDVRPYVQEKKIEWFQVQLPSEMAE--------IRGYLEKIFDDRLVTV 248
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY------HIRRLLSSH 396
RD S+ +I+ G A F A+ L H ++ +
Sbjct: 249 RDLGFSVGSRKYVSKKDLLLLQKKLQGEIRIGGDPAVFTAMSVLAEMLKVNHAVEMIETQ 308
Query: 397 GIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISH----GAQSPKLSKMLEVLV 452
G+ P + L EKL + + SK L M++++ + PKL +++
Sbjct: 309 GLEPLRKYL-EKLDAEASSNSASKASKRLMDDLYMRKALYRVKECEVEHPKLELARKLVS 367
Query: 453 DHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQ 512
K SRVI+F+N+R + ++NAL+ I ++V F+GQ+S + KG +QK Q
Sbjct: 368 KQL--KGSPDSRVIVFTNYRDTAEIVVNALSEIPEIV-PIRFVGQASRRKDKGLTQKQQV 424
Query: 513 AVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
VL+KFRAG YNV+VATS+ EEGLDI DLV+ ++ S +R IQR GRTGR+H GR+
Sbjct: 425 EVLDKFRAGEYNVLVATSVAEEGLDIPSTDLVLFYEPIPSEIRSIQRKGRTGRQHKGRV 483
>gi|13542321|ref|NP_112009.1| RNA helicase (ERCC4-like) [Thermoplasma volcanium GSS1]
gi|14325756|dbj|BAB60659.1| translation initiation factor eIF4A [Thermoplasma volcanium GSS1]
Length = 513
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 155/475 (32%), Positives = 256/475 (53%), Gaps = 29/475 (6%)
Query: 106 VNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPL 165
VN+ R+YQ + K ++ NTL+ +PTGLGKTLIAA++I FF+ + K +F AP++PL
Sbjct: 3 VNIEPREYQINVYKNSIDKNTLIVMPTGLGKTLIAAMLIEKFFK--ENKKSIFLAPTKPL 60
Query: 166 VMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMK 225
V+Q + ++G+ TG++ +R W T ++F TPQV+ D++SG +
Sbjct: 61 VLQHMATLVKVLGLNNNEICAFTGEVDSQERELRWVTGKIFVSTPQVVLNDMKSGIIDIT 120
Query: 226 YLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYIST 285
+V DEAHRA GNYAY E + +L I+ LTA+PG ++ Q I+ NL I
Sbjct: 121 RFDLIVFDEAHRAVGNYAYVDIASEFLEYKKKL-IIGLTASPGGEKGRFQEIVKNLGIEN 179
Query: 286 LEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE----VIRPYTSRLSAIGLLQ 341
+ + E D+DV Y+ + ++ LI+++ + I + + V++P + +G +
Sbjct: 180 VVVKTEKDEDVRKYIKSIEMHLIKLKEPDQCGAIKDLLKSALDSVLKPLKDQGIKVG--R 237
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPA 401
R S +L+N + R P + + A I + +I + + G+ A
Sbjct: 238 TRKDMAESIQNLINRAKEDRSLFP----------LVRHLTAAIRIDYIIEYIETQGLDVA 287
Query: 402 YEMLE--EKLKQGSFAR---FMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFK 456
Y+ ++ E+ + S R M +D RK M+ ++ G ++PK+ K+LE+ +
Sbjct: 288 YQYVKDMEESQDQSIKRAYSMMKSLDDFRKAIENMK-NVLPGYRNPKMMKVLEIC----Q 342
Query: 457 TKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLE 516
K R I+F++FR + ++ L D +K FIGQ+ G SQ+ Q+ ++E
Sbjct: 343 EKVIAGERAIVFTHFRATSDMLLAYLKNSSDKIKPVRFIGQADRGTDVGLSQEEQRQIIE 402
Query: 517 KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+FR G YNV++ATSI EEGLDI + D+V+ ++A S +R IQR GRTGR G +
Sbjct: 403 QFRNGTYNVLIATSIAEEGLDIPDTDVVVFYEAVPSEIRFIQRKGRTGRSRSGEV 457
>gi|294495366|ref|YP_003541859.1| ERCC4 domain protein [Methanohalophilus mahii DSM 5219]
gi|292666365|gb|ADE36214.1| ERCC4 domain protein [Methanohalophilus mahii DSM 5219]
Length = 754
Score = 243 bits (619), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 154/475 (32%), Positives = 254/475 (53%), Gaps = 14/475 (2%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK-IVFAAP 161
I P + R YQ + AL S+TLV LPTGLGKT++A +V+ + R GK +V +P
Sbjct: 10 IKPDSAEQRLYQLDLAGKALSSSTLVVLPTGLGKTIVALLVMAS--RLETTGKKVVMLSP 67
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
++PLV Q ++ + E + TG + P KR W+ RV TPQV+E D+ +
Sbjct: 68 TKPLVEQHAAFFSQMLNLKPEEVMTFTGNLPPAKREKMWEKGRVIVSTPQVIENDLLTKR 127
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
++ + + DEAHRA GNY+Y E + + LA+TA+PGS + I + ++L
Sbjct: 128 ISLRDVAHITFDEAHRAVGNYSYTYIAEEYFNQAKEPLCLAITASPGSSDEKIAEVCESL 187
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
+I + + E D DV+ Y+H++++E + +++ E + + +V+ +L +G
Sbjct: 188 HIEKVAVKTEDDSDVAPYIHHKQVEWVHLKLPDEMQSLKGLLDKVLEDRIQKLDELGYRL 247
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPA 401
+T S +LL + K + P + ++ H ++ + G+ A
Sbjct: 248 PYGKKT-SKKELLGLQRKMQGQLRSGNPDPSVYSSISLMAEILKAGHAIEVIETQGV-GA 305
Query: 402 YEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISH-----GAQSPKLSKMLEVLVDHFK 456
++L++ + + SK L M+Q +SH GA+ PKL + ++ +
Sbjct: 306 LARYVDRLEREACTKGASKASKRLMEDLFMRQ-LSHRLKECGAEHPKLETVCNIVKEQL- 363
Query: 457 TKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLE 516
T +P SRVI+F+NFR + + +AL+ I D + +F+GQSS KG +QK Q +++
Sbjct: 364 TSNP-DSRVIVFTNFRDTAEMVTDALSEIED-INPVKFVGQSSKYKDKGLTQKQQVEIID 421
Query: 517 KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
F+ G +NV+VATS+ EEGLDI DLV+ ++ S +R IQR GRTGRKH GR+
Sbjct: 422 HFKQGNFNVLVATSVAEEGLDIPATDLVVFYEPIPSEIRSIQRKGRTGRKHAGRV 476
>gi|366988979|ref|XP_003674257.1| hypothetical protein NCAS_0A13190 [Naumovozyma castellii CBS 4309]
gi|342300120|emb|CCC67877.1| hypothetical protein NCAS_0A13190 [Naumovozyma castellii CBS 4309]
Length = 1046
Score = 242 bits (618), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 157/453 (34%), Positives = 234/453 (51%), Gaps = 35/453 (7%)
Query: 70 GPKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVA 129
G KP EE +F + H ++ + T+IYP N VRDYQF I + +LF+N L A
Sbjct: 51 GEKPY-YEEIQREVTFGPT--HHKLRRDMLDTYIYPTNFEVRDYQFDIVRKSLFTNILCA 107
Query: 130 LPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTG 189
+PTG+GKT IA+ V+ N+F W GKI+F AP+RPLV QQI+AC I GIP + +
Sbjct: 108 IPTGMGKTFIASTVMLNYFLWTETGKIIFTAPTRPLVAQQIKACLGITGIPMDQAAILLD 167
Query: 190 QISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIR 249
+ S R W KRVFF TPQV+E D++ G K +VCLVIDEAHRATG+YAY ++
Sbjct: 168 K-SRKNREEIWANKRVFFTTPQVVENDLKRGVLNPKDIVCLVIDEAHRATGSYAYTNVVK 226
Query: 250 ELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIE 309
+ RILALTATPGS +++Q +++NL IS++E R E D+ Y+ RK E I+
Sbjct: 227 FIDRFNSSYRILALTATPGSDLESVQEVVNNLDISSIEIRTEESMDIIKYMKKRKQEKIQ 286
Query: 310 VEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLP 369
V + E + ++ I P + +G+ + + ++ + K P +P
Sbjct: 287 VALTTEIEDTIEQLGIAILPVLQQAVELGIYEECEPSHINAFKAMQQSQKV--IANPTIP 344
Query: 370 QIKFGEVEAYFGALITLYHIRRLLSS---HGIRPAYEMLEEKLKQGSFARFMSKNEDIRK 426
+ G F L L H+ ++L +G+R Y K K+ + + K+ +
Sbjct: 345 E---GLKWRNFFILQLLNHVGQMLKRIKIYGLRTFYSYFTNKFKEFTTKYGLGKSTNKIA 401
Query: 427 --------VKLLMQQS---------ISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469
+K +M + HG KL + + L + FK SRVIIF+
Sbjct: 402 AGFYYSPILKTMMDNCRSLVEDPGFLGHG----KLQHVRDELQEFFKY-GVNDSRVIIFT 456
Query: 470 NFRGSVRDIMNALATIG-DLVKATEFIGQSSGK 501
R S +I+ + ++ D + FIGQ+ GK
Sbjct: 457 ELRESALEIVKCIDSMNDDNIIPHIFIGQARGK 489
Score = 102 bits (255), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
Query: 488 LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
L +++ G S G +QK Q+ V+++F+ G YNV+V TSIGEEGLDI EVDL+IC+
Sbjct: 534 LQRSSSRTGSSEDAQINGMNQKQQKEVIKQFKNGIYNVLVCTSIGEEGLDIGEVDLIICY 593
Query: 548 DANVSPLRMIQRMGRTGRKHDGRIPHIFKP-EVQFVELSIEQYVSRGKKVKDDHA 601
D SP++ IQRMGRTGRK DG+I +F E E ++E Y + K + H
Sbjct: 594 DTTSSPIKNIQRMGRTGRKRDGKIVLLFSSNEGSKFEKAMENYSNLQKLISQHHV 648
>gi|355572972|ref|ZP_09043940.1| helicase domain protein [Methanolinea tarda NOBI-1]
gi|354823984|gb|EHF08243.1| helicase domain protein [Methanolinea tarda NOBI-1]
Length = 746
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 163/477 (34%), Positives = 253/477 (53%), Gaps = 41/477 (8%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVV----IYNFFRWFPDGKIV 157
+I P + R YQ +I AL NT+V LPTGLGKT IA +V +YN G+++
Sbjct: 8 YIAPGTLDSRAYQLSIAMKALEENTMVVLPTGLGKTAIALLVAASRLYN-----QGGRVL 62
Query: 158 FAAPSRPLVMQQIEACHNIVGIP--QEWTIDM-TGQISPTKRASFWKTKRVFFVTPQVLE 214
AP++PLV Q + + +P E T M TG+ + RA WK RV F TPQV++
Sbjct: 63 MLAPTKPLVEQHLRFFSQFLSLPGQNERTFAMFTGETPASDRAGAWKDARVIFATPQVIK 122
Query: 215 KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTI 274
DI SG+ + +V ++ DE HR GNYAY R + +LA+TA+PG +++ +
Sbjct: 123 NDILSGSYDLADVVLVIFDECHRGVGNYAYVFIARRYLETARAPLVLAMTASPGGEREKV 182
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL 334
+ + NL I+ +E R ESD DV+ Y+H R+IE+I+V++ E + I +I ++L
Sbjct: 183 EEVCRNLGITRVESRTESDPDVAPYIHEREIEIIQVDLPDELKKATADINALIDSRLAQL 242
Query: 335 SAIG-LLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA-----LITLYH 388
++G ++ R ++ ++ +N++ + +I+ + Y GA L+ L H
Sbjct: 243 RSLGFMVPPRQQLSMKALNAINAQVQ---------QKIQERDSAGYMGASLYAELMKLRH 293
Query: 389 IRRLLSSHGIRPAYEMLEEKLKQG-------SFARFMSKNEDIRKVKLLMQQSISHGAQS 441
L S G R + + L +G S AR IR ++ M G
Sbjct: 294 AVGLAESQGSRVFCQYINRLLAEGTGSGSPKSAARLAKDPVFIRVLERCMSW---KGELH 350
Query: 442 PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGK 501
PK + +V+ + +T SR+IIF+ FR V+ I++ L+ G + F+GQ++
Sbjct: 351 PKPGILADVVAEQLETS--PESRIIIFATFRDMVQQIVDFLSERG--IPCQRFVGQATRD 406
Query: 502 ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558
KG SQK Q L+KFRAG + V+VATS+GEEGLDI DLV+ ++A S +R IQ
Sbjct: 407 TEKGLSQKKQIEALQKFRAGDFRVLVATSVGEEGLDIPSTDLVVFYEAVPSEIRSIQ 463
>gi|410721664|ref|ZP_11360996.1| ERCC4-like helicase [Methanobacterium sp. Maddingley MBC34]
gi|410598574|gb|EKQ53144.1| ERCC4-like helicase [Methanobacterium sp. Maddingley MBC34]
Length = 780
Score = 241 bits (616), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 148/476 (31%), Positives = 250/476 (52%), Gaps = 22/476 (4%)
Query: 103 IYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P + R YQ + + NT++ PT LGKT++AA+V + +PD KI+ AP
Sbjct: 10 IEPGKIEARLYQQLLAANVIKKGNTMIVAPTALGKTVVAALVAADRLEKYPDSKILLLAP 69
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
++PLV+Q E+ + + T +TG + +R W ++ TPQ +E DI +
Sbjct: 70 TKPLVVQHEES---FIEFLKTTTSSLTGAVKLEERIKKWNNSQIICATPQTIESDIIAER 126
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
++ + L+ DE HR TG+Y+Y + IL LTA+PG ++ I + NL
Sbjct: 127 YSLEDVSLLIFDECHRGTGSYSYVFLAQRYTKQAKNQLILGLTASPGGDEERINQVCQNL 186
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
+I+ + +NE D DV Y + +E ++VE+ +E + I + ++ L +G+L
Sbjct: 187 FINEVMVKNEDDPDVKPYFNPIDVEWVKVELKKEQLNIKTHLDVALKNRLKGLKKLGVLN 246
Query: 342 NRDYQTLSPVDLLNSRDKFRQ-----APPPNLPQIKFGEVEAYFGALITLYHIRRLLSSH 396
+ Q +S D+L +R K + A PP + + A F + H LL +
Sbjct: 247 S--IQQVSKKDILRARGKVQNKISQSASPPRECLLAISMLTAVFSVM----HSLELLETQ 300
Query: 397 GIRPAYEMLEE-KLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF 455
G+ + + + K+ A+ + K+E+ + L +Q+ ++G + PKL K++E+L D
Sbjct: 301 GVSNLHSYFDRMRKKKTKAAKGLFKDENFKTAVNLTRQAYNNGVEHPKLGKLMEILKDAA 360
Query: 456 KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVL 515
+ K +VI+FS +R +V I G + A +F GQ+S + KG +QK Q+ ++
Sbjct: 361 EDK----QQVIVFSQYRDTVNQIYTKCQKEG--INAVKFFGQASREKEKGLTQKEQKDII 414
Query: 516 EKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ FR Y V+++TS+ EEG+DI VDLV+ ++ S +RMIQR GRTGR GR+
Sbjct: 415 KAFRMRTYQVLISTSVAEEGIDIPSVDLVVLYEPVPSEIRMIQRRGRTGRTTSGRM 470
>gi|325957866|ref|YP_004289332.1| helicase domain-containing protein [Methanobacterium sp. AL-21]
gi|325329298|gb|ADZ08360.1| helicase domain protein [Methanobacterium sp. AL-21]
Length = 769
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 150/473 (31%), Positives = 254/473 (53%), Gaps = 15/473 (3%)
Query: 103 IYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P + R YQ + L NT++ PT LGKT++AA+V + F D K++ AP
Sbjct: 24 IKPEKIESRLYQQVLAADVLKKGNTMIVAPTALGKTIVAALVSAERLKTFEDSKVLVLAP 83
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
S+PLV+Q E+ + +TG I P +R W ++ TPQ +E DI S
Sbjct: 84 SKPLVIQHEESFREFLKTS---VSSLTGSIKPEERVKLWNNSQIICATPQTVESDIISSR 140
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+K + +V DE HR G+Y+Y + + +L LTA+PG + IQ + NL
Sbjct: 141 YDLKNVSLMVFDECHRGVGSYSYVYLADKYVKEAKNPLLLGLTASPGWNEDKIQEVCQNL 200
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
YI +E ++E D DV Y + +++ I+ E+ QE +I + + ++ + L +G++
Sbjct: 201 YIKEVEIKSEEDSDVEPYFNPVEVKWIKTELNQELKDIKMHLEKALKARLTTLKKMGVIS 260
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNL--PQIKFGEVEAYFGALITLYHIRRLLSSHGIR 399
+ +S D+L ++ + ++ +L PQ F V + A+I + H LL + G
Sbjct: 261 S--ISNVSKKDVLKAKGRAQKRIGVSLHPPQKCFLAV-SILTAVINIQHSVELLETQGTI 317
Query: 400 PAYEMLEE-KLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTK 458
P + +E K K+ A+ + + + + L +++ +G PKL +++++L K
Sbjct: 318 PLQKYIERLKKKKTKAAKGLLNDAEFQMAVGLADKAVENGVDHPKLKRLMQILKKELKNS 377
Query: 459 DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518
+ SR+IIF+ FR SV +I + A +F GQ+S + KG +QK Q+ +++ F
Sbjct: 378 N---SRIIIFTQFRDSVENIYQHCMETN--INAVKFYGQASRENEKGLTQKKQKEIIKSF 432
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ G Y+V+++TS+ EEG+DI VDLV+ ++ S +RMIQR GRTGRK+ GR+
Sbjct: 433 KNGEYDVLISTSVAEEGIDIPSVDLVVLYEPVPSEIRMIQRRGRTGRKNRGRM 485
>gi|21227489|ref|NP_633411.1| Hef nuclease [Methanosarcina mazei Go1]
gi|20905864|gb|AAM31083.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina mazei
Go1]
Length = 864
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 157/479 (32%), Positives = 251/479 (52%), Gaps = 23/479 (4%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
I P V R YQ + AL ++LV LPTGLGKT+IA VI + + F GK + +P+
Sbjct: 18 IKPDTVEQRLYQLNLAGEALKGSSLVVLPTGLGKTIIALFVIASRLQRF-GGKALILSPT 76
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q ++ +P+E + TG ISP +R W+ ++ TPQV+E DI +
Sbjct: 77 KPLVEQHAAFFKKVMALPEEEVLAFTGSISPAERERLWEQGKLIVSTPQVIENDILTRRI 136
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + + DEAHRA GNYAY + +L +TA+PGS + I + + L+
Sbjct: 137 SLENVSHITFDEAHRAVGNYAYTFIAEKYFESAKNPHVLGITASPGSSDEKISEVCEALH 196
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
+ + + E D+DV YV ++IE ++V + E EI + + ++ + RL+ +++N
Sbjct: 197 VQNVAVKTEKDRDVRPYVQEKEIEWLQVNLPAEMAEIRSYLEKI---FDDRLA---IIRN 250
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA------LITLYHIRRLLSSH 396
+ S + S+ +I+ G A F A ++ + H ++ +
Sbjct: 251 LGFSAGSGKYV--SKKDLLLLQKKLQGEIRVGGDPAVFSAMSVVAEMMKVNHAVEMVETQ 308
Query: 397 GIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHG----AQSPKLSKMLEVLV 452
GI + L EKL + + SK L M++++ + PKL ++
Sbjct: 309 GIEALRKYL-EKLDAEASSSKASKAAKRLMDDLYMRKTLYRAKECEVEHPKLELARRIVC 367
Query: 453 DHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQ 512
+ + +P SRVI+F+N+R S ++NAL+ + V F+GQ S KG +QK Q
Sbjct: 368 EQLEG-NP-DSRVIVFTNYRDSAEMVVNALSRVSG-VNPVRFVGQGSRHKDKGLTQKQQV 424
Query: 513 AVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+LE+FRAG YN +VATS+ EEGLDI DLV+ ++ S +R IQR GRTGR+H GR+
Sbjct: 425 EILERFRAGEYNALVATSVAEEGLDIPATDLVLFYEPVPSEIRSIQRKGRTGRQHKGRV 483
>gi|359416970|ref|ZP_09209211.1| Hef nuclease [Candidatus Haloredivivus sp. G17]
gi|358032669|gb|EHK01333.1| Hef nuclease [Candidatus Haloredivivus sp. G17]
Length = 708
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 242/470 (51%), Gaps = 36/470 (7%)
Query: 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167
+ R YQ I +++ NT++ LPTGLGKT+IAA++ + GK++F AP++PLV
Sbjct: 9 IESRAYQEVIAASSMKRNTMIVLPTGLGKTVIAAMIAA---KKLESGKVLFLAPTKPLVE 65
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYL 227
Q ++ + I ++ MTG+I P R WK K+VFF TPQV+E D+ +G ++
Sbjct: 66 QHKKSFQEFIEIDKDQMEVMTGEIRPDDRYEIWKEKKVFFATPQVVENDLIAGEVPVRDF 125
Query: 228 VCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLE 287
+ DE HRATG Y+Y +++S + LTA+PG ++ I + DNL + E
Sbjct: 126 SLTIFDECHRATGEYSYVFISEKILSHKI-----GLTASPGGDKEKIMEVADNLEMENFE 180
Query: 288 YRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQT 347
R E D DV Y+ ++++ I+V + NNR +E R L + +D +
Sbjct: 181 VRTEDDPDVEPYIQDKEVNWIKVPL-------NNR-FETARKKLEDAKRKPLSELKDMEY 232
Query: 348 LSPV-----DLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAY 402
+S V DLL + + R + + + ++ + + + LL + G+ Y
Sbjct: 233 ISSVNINKTDLLKLQSEIRSKLSTSDDPKHYSAI-SHAASALKISQAIELLETQGVSQCY 291
Query: 403 EMLEEKLKQGSFARFMSKN-EDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPK 461
+ S A + N ED RK K L++ G + PKL K++E L+D F
Sbjct: 292 SYMRGLENDDSKAGKKALNDEDFRKAKSLVEYLKKKGEEHPKLEKVVE-LLDGF------ 344
Query: 462 HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG 521
R I+F+ +R S I+ L D VK F+GQ + G +Q Q LE+F G
Sbjct: 345 DGRAIVFTEYRASADKIVEELEASHDPVK---FVGQ---QGDDGMTQTQQIETLEQFGDG 398
Query: 522 GYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
Y+V+V+TSIGEEGLD+ VD VI ++ S +R IQRMGRTGR G +
Sbjct: 399 EYDVLVSTSIGEEGLDVPSVDKVIFYEPVSSSVRDIQRMGRTGRHESGEV 448
>gi|367004855|ref|XP_003687160.1| hypothetical protein TPHA_0I02220 [Tetrapisispora phaffii CBS 4417]
gi|357525463|emb|CCE64726.1| hypothetical protein TPHA_0I02220 [Tetrapisispora phaffii CBS 4417]
Length = 1038
Score = 240 bits (612), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 149/432 (34%), Positives = 231/432 (53%), Gaps = 32/432 (7%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H ++ ++ ++YP N VR+YQ+ I K AL N L A+PTG+GKT IA+ V+ NFFRW
Sbjct: 68 HHKLKSDQLGYYVYPTNFEVREYQYNIVKKALTENVLCAIPTGMGKTFIASTVMLNFFRW 127
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
GKI+F AP+RPLV QQI+AC I GIP + + + + S R WK KRVFF TP
Sbjct: 128 SETGKIIFTAPTRPLVAQQIKACLGITGIPYDHSAILLDK-SRKNREEIWKEKRVFFTTP 186
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
QV+E D++ G + ++CL+IDEAHRATG+YAYC ++ + RILALTATPGS+
Sbjct: 187 QVVENDLKRGVLDPRDIICLIIDEAHRATGSYAYCKLVQFIDRFNSSYRILALTATPGSE 246
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+Q +++NL IS +E R E D++ Y+ R E IEV + E +I +I I P
Sbjct: 247 ITNVQEVVNNLNISKIEIRTEESMDIAKYMKKRYKEKIEVSLTTEIEDIIEQIGIAITPT 306
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPP----PNLPQ-IKFGEVEAYFGALIT 385
+ +G+ + P +N+ +++ P+LP+ IK+ YF L
Sbjct: 307 LQQAVELGIYDD------CPPSYINAFVALQKSQQIILNPSLPEGIKW---RNYF-ILQL 356
Query: 386 LYHIRRLLSS---HGIRPAYEMLEEKLKQGSFARFMSKNEDIRK--------VKLLMQQS 434
L H+ +++ +G+ Y+ + K K+ + + K+ + +K +M
Sbjct: 357 LNHVGQMMKRIKIYGVITFYKYFQNKHKEFTTKYSLGKSTNKIAASFYYHPMIKTMMDAC 416
Query: 435 ISHGAQSPKLSKM----LEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG-DLV 489
H S +S + ++ + +F SRVIIF+ R S +I+ + + +
Sbjct: 417 DKHVKNSNFVSHLKFQHIQEELHNFFIDGRSDSRVIIFTELRDSALEIVKYIDNLNIKTI 476
Query: 490 KATEFIGQSSGK 501
FIGQ+ GK
Sbjct: 477 IPHIFIGQAKGK 488
Score = 104 bits (260), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Query: 504 KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
KG +QK Q+ V+ F+ G YNV+V TSIGEEGLDI EVDL+ICFD SP++ IQRMGRT
Sbjct: 549 KGMTQKQQKEVISDFKKGIYNVLVCTSIGEEGLDIGEVDLIICFDTTSSPIKNIQRMGRT 608
Query: 564 GRKHDGRIPHIFKP-EVQFVELSIEQYVSRGKKV 596
GRK DG+I +F E + E ++E Y K++
Sbjct: 609 GRKRDGKIVLLFASNESKKFEKAMESYYDLQKQI 642
>gi|224012567|ref|XP_002294936.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220969375|gb|EED87716.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 224
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 109/212 (51%), Positives = 154/212 (72%), Gaps = 2/212 (0%)
Query: 102 WIYPVN--VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159
WIYPV+ P R YQ +++TA+ +NTLV+LPTGLGKTLIAAVV+YN++RWFP GK+VF
Sbjct: 1 WIYPVDEKYPERSYQLQMSQTAIMANTLVSLPTGLGKTLIAAVVMYNYYRWFPTGKVVFC 60
Query: 160 APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS 219
AP+RPLV QQI+AC+ I+GIP+ T +++G+ P R + W +KRVFF TP L KDI+
Sbjct: 61 APTRPLVTQQIQACYKIMGIPELHTAEISGRSKPESRENMWNSKRVFFCTPHTLVKDIEG 120
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIID 279
G C K +VC+V+DEAHRATGN+A + + + R++ L+ATPG+ ++IQ I+D
Sbjct: 121 GRCDAKSIVCVVMDEAHRATGNHANALLVNMIEEAGAKFRLVGLSATPGTDIKSIQVILD 180
Query: 280 NLYISTLEYRNESDQDVSSYVHNRKIELIEVE 311
L I+ +E + E D DV Y+H+R+ E+I V+
Sbjct: 181 TLKINQIEAKTEDDPDVKRYIHHREEEVIIVK 212
>gi|147920338|ref|YP_685889.1| Hef nuclease [Methanocella arvoryzae MRE50]
gi|110621285|emb|CAJ36563.1| putative type III restriction-modification system, restriction
subunit [Methanocella arvoryzae MRE50]
Length = 792
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 151/481 (31%), Positives = 254/481 (52%), Gaps = 23/481 (4%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR-WFPDGKIVFAA 160
+ P V R YQ +++ AL ++L+ LPTGLGKT+IA +VI N + P K++ +
Sbjct: 10 LLVPNTVSSRSYQETLSQKALEKSSLIVLPTGLGKTIIALLVILNRLQAGGPGAKVLMLS 69
Query: 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
P++PLV Q + I E + TG P +RA W V TPQV+E D+
Sbjct: 70 PTKPLVEQHASFFRKAMAIDPEKIVVFTGSTPPEERADLWDKATVIVSTPQVIENDLLCR 129
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDN 280
++ + +V DEAHRATGNYAY + M +L +TA+PGS + I + ++
Sbjct: 130 RFTLEDVTVVVFDEAHRATGNYAYVYIAKRYMEQARSPLVLGITASPGSTPEKINEVRES 189
Query: 281 LYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLL 340
L I +E + E+D DV+ Y++++ +E I V + +A EI + ++ +L +G++
Sbjct: 190 LAIERVEVKTENDPDVAPYIYDKDVEWIRVNVPDKANEIRILLEAIVEDRAKKLFEMGVI 249
Query: 341 QNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAY-----FGALITLYHIRRLLSS 395
+++ +LN ++ + E+Y ++ + H L+ +
Sbjct: 250 YSKNI-------VLNKKELLLLQQRLQAAIARGSSPESYKAISVVAEIMKVGHAIDLIQT 302
Query: 396 HGIRPAYEMLEEKLKQGSFARFMSKN-----EDIRKVKLLMQQSISHGAQSPKLSKMLEV 450
G+ P E++K+ + + SK ED R ++ M+ + +PK K+ E+
Sbjct: 303 QGVLPLRRYF-ERMKEEASTKGGSKATRRLFEDAR-LQHAMRVTNETDEVNPKTEKVAEI 360
Query: 451 LVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKV 510
+++ + +P S+VI+F+N+R + + LA + + +K F+GQ+S KG SQK
Sbjct: 361 VLEQLQA-NPA-SKVIVFTNYRDTADVVAKRLAEV-EGIKPVRFVGQASKLNDKGLSQKK 417
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
Q +L++FRAG YN ++ATS+ EEGLDI DLV+ ++ S +R IQR GRTGR GR
Sbjct: 418 QVEILDRFRAGEYNTLIATSVAEEGLDIPSTDLVLFYEPVPSEIRSIQRRGRTGRNTVGR 477
Query: 571 I 571
+
Sbjct: 478 V 478
>gi|395646185|ref|ZP_10434045.1| helicase domain-containing protein [Methanofollis liminatans DSM
4140]
gi|395442925|gb|EJG07682.1| helicase domain-containing protein [Methanofollis liminatans DSM
4140]
Length = 738
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 163/467 (34%), Positives = 242/467 (51%), Gaps = 15/467 (3%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ AI AL +T+V LPTGLGKT +A + + + G+++ AP++PLV Q +
Sbjct: 17 RRYQLAIALQALDRHTMVVLPTGLGKTAVALITAASRL-YREGGRLLVLAPTKPLVEQHL 75
Query: 171 EACHNIVGIPQEWTIDM-TGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
+ +P E T + TG P +R + W+ R F TPQV++ D+ +G + +
Sbjct: 76 RYFSERLALPDEGTCAIFTGDTGPDERTAMWEGARAIFATPQVIKNDLIAGRYTLADVTL 135
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
+V+DE HRA GNYAY R + +LA+TA+PG ++ ++ NL I +E R
Sbjct: 136 MVVDECHRAVGNYAYVFLARRYHQTADKPLLLAMTASPGGDHGKVEEVMANLGIEGVETR 195
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ-NRDYQTL 348
ESD DV YVH R++E +V++ ++ I +I + L G +R ++
Sbjct: 196 TESDPDVIPYVHEREVEHRQVDLPEDLALAVGDINILIDSRLAALKRAGFFAPDRSKLSM 255
Query: 349 SPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEK 408
++ +N+ + R A F Y L+ L H L S G R LE+
Sbjct: 256 KALNKINAEIQGRIAQRDTAA---FTAASIY-AELMKLRHAVSLAESQGSRVLAGYLEKL 311
Query: 409 LKQGSFARFMSKNEDIRK---VKLLMQQSIS-HGAQSPKLSKMLEVLVDHFKTKDPKHSR 464
K+G A ++ + + L Q+S S G PK+ + LV P+ SR
Sbjct: 312 SKEGQSATGTKASQRLAGDPVFQRLCQRSASWQGELHPKVG-LTVALVKEQVALHPE-SR 369
Query: 465 VIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN 524
I+F+ FR +V ++ AL G + A F+GQ+S A KG SQK Q VL +FR G +
Sbjct: 370 TIVFATFRDTVALLVEALREAG--IGAERFVGQASRDAEKGLSQKKQIDVLRRFREGEFP 427
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
VIVATS+GEEGLD+ DLV+ ++A S +R IQR GRTGR GRI
Sbjct: 428 VIVATSVGEEGLDVPSTDLVVFYEAVPSEIRSIQRKGRTGRSGTGRI 474
>gi|154150356|ref|YP_001403974.1| Hef nuclease [Methanoregula boonei 6A8]
gi|153998908|gb|ABS55331.1| helicase domain protein [Methanoregula boonei 6A8]
Length = 745
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 156/483 (32%), Positives = 255/483 (52%), Gaps = 24/483 (4%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P ++ R+YQ I AL +NT+V LPTGLGKT IA +V + + GK++ AP
Sbjct: 8 LIRPDSIESREYQLGIAMKALDANTMVILPTGLGKTAIALLVAASRL-YNEGGKVLMLAP 66
Query: 162 SRPLVMQQIEACHNIV-----GIPQEWTIDM-TGQISPTKRASFWKTKRVFFVTPQVLEK 215
++PLV Q + + P M TG+ PT+R + W+ +V F TPQV++
Sbjct: 67 TKPLVEQHLRFFEKYLIAKSPTAPDACQFAMFTGEAPPTERTAEWERSQVIFATPQVVKN 126
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
D+ +G ++ + L++DE HRA GNYAY R + +LA+TA+PG Q+ +
Sbjct: 127 DLIAGRYTLQDVALLIVDECHRAVGNYAYVFLARRYHDTAAKPLLLAMTASPGGSQEKVS 186
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335
+ NL I+ +E R E+D DVS YVH R++E+ ++++ E + I +I L+
Sbjct: 187 DVCANLGIAHVENRTENDPDVSPYVHEREVEVHQIDLPAELKSAIHAIHTLIDDRLGLLA 246
Query: 336 AIGL-LQNRDYQTLSPVDLLNS--RDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392
++G + RD ++ + +N+ + + + P + + + L H L
Sbjct: 247 SLGFAVPKRDRLSMKELAGINAQIQQRIQNRDPAGY------SAASVYAECLKLKHAVTL 300
Query: 393 LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRK---VKLLMQQSIS-HGAQSPKLSKML 448
S G + + + +G + ++ + + L +++IS G PK + +L
Sbjct: 301 AESQGSEVFKGYIAKLVAEGRGSGGSKASQRLSRDPAFHSLYERTISWAGELHPKPAAVL 360
Query: 449 EVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQ 508
++ + T SR+IIF+ FR +V+ +++ L G + F+GQ++ A KG SQ
Sbjct: 361 GIVKEQIDTH--PDSRIIIFATFRDTVQLLVDYLTKNG--ISCERFVGQATKDAEKGLSQ 416
Query: 509 KVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD 568
K Q A L +FRAG + V+VATS+GEEGLD+ DLVI ++ S +R IQR GRTGR
Sbjct: 417 KRQIAALARFRAGEFKVLVATSVGEEGLDVPSTDLVIFYEPVPSEIRSIQRKGRTGRSGA 476
Query: 569 GRI 571
GR+
Sbjct: 477 GRV 479
>gi|299755161|ref|XP_001828472.2| DEAH family protein [Coprinopsis cinerea okayama7#130]
gi|298411096|gb|EAU93305.2| DEAH family protein [Coprinopsis cinerea okayama7#130]
Length = 1197
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 156/470 (33%), Positives = 236/470 (50%), Gaps = 118/470 (25%)
Query: 99 AKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVF 158
AK WIYP N P RDYQ+ I K L+ NTLVALPTGLGKT IA VV+ N++RW+P+GKI+F
Sbjct: 210 AKHWIYPTNRPKRDYQYNIAKHCLYENTLVALPTGLGKTFIAGVVMLNYYRWYPEGKIIF 269
Query: 159 AAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
A ++PLV QQIEACH+ GIP +++TG+++ + R +W+ KRVF++TPQ LE D++
Sbjct: 270 LAVTKPLVAQQIEACHDTCGIPGSDGVELTGEVASSLRVRYWEEKRVFYMTPQTLESDLK 329
Query: 219 SGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHII 278
SG C +V LVI ATPG+K +T+QH+I
Sbjct: 330 SGICDPSDVVLLVI--------------------------------ATPGNKVETVQHVI 357
Query: 279 DNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIG 338
D L IS +E RNES D+ Y+ + ++ +IRP T ++ I
Sbjct: 358 DGLRISHIEIRNESSLDIKPYIFEKAVKT-----------------HIIRP-TGEVAQI- 398
Query: 339 LLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALIT-LYHIRRLLSSHG 397
D+L IK+ ++ A L IR++
Sbjct: 399 ------------RDML----------------IKYIDLTGCISACYDYLDEIRKIDGVGD 430
Query: 398 IRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF-- 455
+P ++ F M+K ++I + GA PK+ K+ ++L+++F
Sbjct: 431 KKPIWK------DDPDFKAIMAKLDEI---------AAQGGASHPKMEKLKDILINYFGS 475
Query: 456 KTKDP--------KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG-KASKGQ 506
+ +DP S VI+FS++R V +I+ L L++A F+GQ++ K KG
Sbjct: 476 RMQDPDADNPENADRSCVIVFSSYRAVVEEIVKELDGHKPLIRAAAFVGQATDKKGRKGL 535
Query: 507 SQKVQQAVLEKF------RAGGYNVIVATSIGEEGLDI-----MEVDLVI 545
+QK QQAV ++F R+G ++++A + E +D MEV VI
Sbjct: 536 TQKKQQAV-QRFGRTGRKRSGEVHLLLAEAREEANMDTAKANYMEVQKVI 584
>gi|322368028|ref|ZP_08042597.1| Hef nuclease [Haladaptatus paucihalophilus DX253]
gi|320552044|gb|EFW93689.1| Hef nuclease [Haladaptatus paucihalophilus DX253]
Length = 806
Score = 236 bits (603), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 147/479 (30%), Positives = 246/479 (51%), Gaps = 20/479 (4%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
++ P + R YQ + TA +TLV LPTGLGKT ++ +V F GK + AP
Sbjct: 15 YLSPSFIERRLYQIQLAGTARNDHTLVCLPTGLGKTTVSLLVTAERFDDVG-GKSLLLAP 73
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
++PLV Q + + IP E + TG++ P +R+ WK+ +V TPQV+E DI G
Sbjct: 74 TKPLVNQHADFYREALSIPDEDIVVFTGEVRPDERSELWKSSKVIIATPQVVENDIVGGR 133
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+ + + DE HRATG+YAY + + ++A+PG +++I + +NL
Sbjct: 134 IDLGPVTHVTFDECHRATGDYAYNYIAERYHADADDPLVTGMSASPGGDKESILEVCENL 193
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
+ +E E D DVS+Y H+ ++E + V++ E +EI + + EVI RL +G++
Sbjct: 194 GLHEVEVMTEEDSDVSTYTHDTEVEWVRVQLPDEIIEIRDALNEVISDRLERLKDLGVI- 252
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFG--ALITLYHIRRLL------ 393
N +S DL R + ++ I + E Y G A + +RR +
Sbjct: 253 NTTRPDVSQKDLNKVRGQLQKL-------IDNDQSEGYQGMSAHAEVMKLRRAVELAETQ 305
Query: 394 SSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVD 453
S +R +E + ++ + KV+ M++++ + + PK K+ + +
Sbjct: 306 SVESLRRYFERQRNSARSSGASKASQRMVSEPKVQEAMRKAVQYEGRHPKFQKVRTYVAE 365
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALA-TIGDLVKATEFIGQSSGKASKGQSQKVQQ 512
D + R+I+F+ R + + + +G + A F+GQ S G +QK QQ
Sbjct: 366 TLGLNDGE--RIIVFTESRDTAETLTDFFNDELGSQLTARRFVGQGDKDGSDGMTQKEQQ 423
Query: 513 AVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
L+KFRAG + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ G++
Sbjct: 424 ETLDKFRAGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAVRSIQRKGRTGRQAQGQV 482
>gi|261403123|ref|YP_003247347.1| Hef nuclease [Methanocaldococcus vulcanius M7]
gi|261370116|gb|ACX72865.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
M7]
Length = 783
Score = 236 bits (603), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 164/473 (34%), Positives = 251/473 (53%), Gaps = 24/473 (5%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P + R YQ I AL NTL L TGLGKT IA +VI DGK++ AP
Sbjct: 7 LIKPNILEARVYQQIIAGNALNKNTLCVLSTGLGKTAIAILVIAGILTK-KDGKVLILAP 65
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
SRPLV Q + +++ I ++ I +TG+ISP KR +K ++F TPQV+E DI +G
Sbjct: 66 SRPLVEQHYKKLKDVLNIDEDKIIALTGKISPKKREDLYKKGKIFIATPQVIENDIIAGR 125
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+ + L+ DEAH TG+++Y ++ + IL LTA+PGS I I +NL
Sbjct: 126 INIDEFILLIADEAHHTTGDHSYAFVAKKFRD---KCHILGLTASPGSDIDKIMEICENL 182
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
I +E R E D+DV Y+ K++ I +E+ +E + I E ++ L G++
Sbjct: 183 GIEHVEVRTEDDEDVKPYIAKIKLKPIRIELPKEFKQALTLINEALKERLKILKDAGVV- 241
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPA 401
N Y ++ DL+ + QIK+ ++ AL L H R LL S G +
Sbjct: 242 NSIYH-ITKTDLIELNKRLFAYD----EQIKYELIKVCSEAL-KLMHARELLESQG-KTV 294
Query: 402 YEMLEEKL---KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTK 458
+ KL + S ++ + I+ V LL++ + H PKL K++E++ K
Sbjct: 295 FLNYINKLSSQRTKSAKSVINDEKIIKAVNLLLKSNTDH----PKLEKVIEMVKKIL--K 348
Query: 459 DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518
+ K R+IIF+ +R +V I+N L + +KA +FIGQ+S + KG +QK Q +EKF
Sbjct: 349 ENKDERIIIFAQYRDTVEKIVNLLNQ--NEIKAIKFIGQASKEKGKGMTQKEQIKAIEKF 406
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ G +V+V+TS+ EEG+DI V+ +I ++ S +R IQR GR R G +
Sbjct: 407 KKEG-SVLVSTSVSEEGIDIPSVNYIIFYEPVPSEIRFIQRRGRAMRGEGGNV 458
>gi|444705581|gb|ELW46990.1| Fanconi anemia group M protein [Tupaia chinensis]
Length = 526
Score = 236 bits (602), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 109/233 (46%), Positives = 141/233 (60%), Gaps = 26/233 (11%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
A WIYP N PVRDYQ I++TALF NTLV LPTGLGKT IAAVV+YNF+RWFP GK+V
Sbjct: 79 AGALWIYPTNCPVRDYQLHISRTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
F AP++PLV QQIEAC+ ++GIPQ +MTG R W +KRV F+TPQV+ D+
Sbjct: 139 FMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGSTQAFTRREIWCSKRVLFLTPQVMVNDL 198
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
G C + C+VIDEAH+A GNYAYC Q +Q +
Sbjct: 199 SRGVCPAADIKCVVIDEAHKALGNYAYC--------------------------QAVQQV 232
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
I NL I +E R+E D+ Y H R++E + V +G+E I +V++ +
Sbjct: 233 ITNLLIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELAAIQKTYIQVVKQF 285
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 53/68 (77%)
Query: 508 QKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH 567
QK V+++FR GGYN +V+T +GEEGLDI EVDL+ICFDA SP+R++QRMGRTGRK
Sbjct: 275 QKTYIQVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLVQRMGRTGRKR 334
Query: 568 DGRIPHIF 575
GRI I
Sbjct: 335 QGRIVVIL 342
>gi|452209972|ref|YP_007490086.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina mazei
Tuc01]
gi|452099874|gb|AGF96814.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina mazei
Tuc01]
Length = 845
Score = 236 bits (601), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 155/479 (32%), Positives = 244/479 (50%), Gaps = 30/479 (6%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
I P V R YQ + AL ++LV LPTGLGKT+IA VI + + F GK + +P+
Sbjct: 6 IKPDTVEQRLYQLNLAGEALKGSSLVVLPTGLGKTIIALFVIASRLQRF-GGKALILSPT 64
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q ++ +P+E + TG I P +R W+ ++ TPQV+E DI +
Sbjct: 65 KPLVEQHAAFFKKVMALPEEEVLAFTGSIPPAERERLWEQGKLIVSTPQVIENDILTRRI 124
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + + DEAHRA GNYAY + +L +TA+PGS + I + + L+
Sbjct: 125 SLENVSHITFDEAHRAVGNYAYTFIAEKYFESAKNPHVLGITASPGSSDEKISEVCEALH 184
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
+ + + E D+DV YV ++IE ++V + E EI + + ++ R N
Sbjct: 185 VQNVAVKTEKDRDVRPYVQEKEIEWLQVNLPAEMAEIRSYLEKIFR-------------N 231
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA------LITLYHIRRLLSSH 396
+ S + S+ +I+ G A F A ++ + H ++ +
Sbjct: 232 LGFSAGSGKYV--SKKDLLLLQKKLQGEIRVGGDPAVFSAMSVVAEMMKVNHAVEMVETQ 289
Query: 397 GIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHG----AQSPKLSKMLEVLV 452
GI + L EKL + + SK L M++++ + PKL ++
Sbjct: 290 GIEALRKYL-EKLDAEASSSKASKAAKRLMDDLYMRKTLYRAKECEVEHPKLELARRIVC 348
Query: 453 DHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQ 512
+ + +P SRVI+F+N+R S ++NAL+ + V F+GQ S KG +QK Q
Sbjct: 349 EQLEG-NP-DSRVIVFTNYRDSAEMVVNALSRVSG-VNPVRFVGQGSRHKDKGLTQKQQV 405
Query: 513 AVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+LE+FRAG YN +VATS+ EEGLDI DLV+ ++ S +R IQR GRTGR+H GR+
Sbjct: 406 EILERFRAGEYNALVATSVAEEGLDIPATDLVLFYEPVPSEIRSIQRKGRTGRQHKGRV 464
>gi|408381096|ref|ZP_11178646.1| Hef nuclease [Methanobacterium formicicum DSM 3637]
gi|407816361|gb|EKF86923.1| Hef nuclease [Methanobacterium formicicum DSM 3637]
Length = 799
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 144/476 (30%), Positives = 247/476 (51%), Gaps = 22/476 (4%)
Query: 103 IYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P + R YQ + + NT++ PT LGKT++AA+V + +P+ KI+ AP
Sbjct: 25 IEPGKIEARLYQQLLAANVIKKGNTMIVAPTALGKTVVAALVAADRLEKYPESKILLLAP 84
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
++PLV+Q E + + T +TG + +R W ++ TPQ +E DI +
Sbjct: 85 TKPLVVQHEERFLEFL---KTTTTSLTGAVKLEERIKRWNDSQIICATPQTIESDIIAER 141
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
++ + L+ DE HR TG+Y+Y + + IL LTA+PG ++ I + NL
Sbjct: 142 YSLEDVSLLIFDECHRGTGSYSYVFLAQRYTNQAKHQLILGLTASPGGDEERINQVCQNL 201
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
+I+ + +NE D DV Y + +E ++V++ +E ++I + ++ L +G+L
Sbjct: 202 FINEVMVKNEDDPDVKPYFNPIDVEWVKVDLKKEQLDIKKHLDVALKNRLKGLKKLGVLN 261
Query: 342 NRDYQTLSPVDLLNSRDKFRQ-----APPPNLPQIKFGEVEAYFGALITLYHIRRLLSSH 396
+ + +S D+L +R K + A PP + + A F + H LL +
Sbjct: 262 STN--QVSKKDILRARGKVQNRISQSASPPRDCLLAISMLTAVFSVM----HSLELLETQ 315
Query: 397 GIRPAYEMLEE-KLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF 455
G+ + + + K+ A+ + K+E+ + L +Q+ G + PKL K++E+L
Sbjct: 316 GVSNLHSYFDRMRKKKTKAAKGLFKDENFKTAVNLTRQAYDKGVEHPKLGKLMEIL---- 371
Query: 456 KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVL 515
K+ +VI+FS +R +V I G + A +F GQ+S KG +QK Q+ ++
Sbjct: 372 KSAAEDKEQVIVFSQYRDTVNHIYRKCQEEG--INAVKFFGQASRDKEKGLTQKEQKDII 429
Query: 516 EKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ FR Y V+++TS+ EEG+DI VDLV+ ++ S +RMIQR GRTGR GR+
Sbjct: 430 KAFRMRTYQVLISTSVAEEGIDIPSVDLVVLYEPVPSEIRMIQRRGRTGRTTSGRM 485
>gi|256810024|ref|YP_003127393.1| Hef nuclease [Methanocaldococcus fervens AG86]
gi|256793224|gb|ACV23893.1| ERCC4 domain protein [Methanocaldococcus fervens AG86]
Length = 767
Score = 233 bits (593), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 163/471 (34%), Positives = 250/471 (53%), Gaps = 23/471 (4%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P + R YQ I AL TL L TGLGKT IA +VI DGK++ AP
Sbjct: 7 LIKPNKLEARLYQQIIAANALKKKTLCVLSTGLGKTAIAILVIAGILTK-KDGKVLILAP 65
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
SRPLV Q +++ I + I +TG+ISP KRA +K ++F TPQV+E DI +G
Sbjct: 66 SRPLVEQHCNRLKDVLNIDENMIIALTGKISPNKRAELYKKGKIFVATPQVIENDIIAGR 125
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+ V L+ DEAH TG++AY ++ + +L LTA+PGS + I +NL
Sbjct: 126 INIDDFVLLIADEAHHTTGDHAYAFVAKKFKD---KCHVLGLTASPGSDIDKVMEICENL 182
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
I +E R E D+DV YV K+ I +E+ E + I E ++ L G++
Sbjct: 183 GIEHVEVRTEDDEDVKPYVAKVKLTPIRIELPPEFKKALKLINEALKERLKILKDFGVIN 242
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPA 401
+ ++ +L+ +K ++K+ + AL L H + LL S G
Sbjct: 243 S--IANVTKTELIELNNKLFSYD----EEVKYELIRVCSEAL-KLMHAKELLESQGKTVF 295
Query: 402 YEMLEE-KLKQGSFARFMSKNEDIRK-VKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKD 459
+ + +++ A+ +S +E IR+ V LLM+ ++ H PKL K+++ +V + K+
Sbjct: 296 LSYINKLSMQRTKSAKSISNDEKIREAVNLLMESNVEH----PKLEKVVD-MVKNILEKN 350
Query: 460 PKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
K R+I+F+ +R +V I+N L G +KA FIGQ++ K KG SQK Q +EKF+
Sbjct: 351 -KDERIIVFAQYRDTVEKIVNLLHQNG--IKAIRFIGQAN-KEGKGMSQKQQIEAIEKFK 406
Query: 520 AGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
G +V+V+TS+ EEG+DI V+ +I ++ S +R IQR GR R G+
Sbjct: 407 REG-SVLVSTSVSEEGIDIPTVNYIIFYEPVPSEIRFIQRRGRAMRGEGGK 456
>gi|20088995|ref|NP_615070.1| Hef nuclease [Methanosarcina acetivorans C2A]
gi|19913848|gb|AAM03550.1| helicase [Methanosarcina acetivorans C2A]
Length = 821
Score = 232 bits (592), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 154/479 (32%), Positives = 249/479 (51%), Gaps = 23/479 (4%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
I P V R YQ + AL ++LV LPTGLGKT+IA VI + + F GK + +P+
Sbjct: 6 IKPDTVEQRLYQLNLAGKALEGSSLVVLPTGLGKTIIALFVIASRLQRF-GGKALILSPT 64
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q ++ +P+E + TG I+P +R W ++ TPQV+E D+ +
Sbjct: 65 KPLVDQHAAFFKKVMALPEEEILAFTGSIAPAEREKLWAQGKLIVSTPQVIENDLLTKRI 124
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + + DEAHRA GNYAY + IL +TA+PGS + I + L+
Sbjct: 125 SLEDVSHITFDEAHRAVGNYAYTFIAEKYFESAKNPHILGITASPGSSDEKIAEVCQALH 184
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
+ + + E D+DV YV ++IE ++V++ E EI + + +++ RL I
Sbjct: 185 VENVAVKTEKDRDVRPYVQEKEIEWLQVQLPPEMAEIRSYLEKIL---DDRLRII----- 236
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA------LITLYHIRRLLSSH 396
+D + S+ +I+ G A F A ++ + H ++ +
Sbjct: 237 KDLGFSAGSGKYISKKDLLLLQKQLQGEIRVGGDPAIFSAMSVVAEMMKVNHAVEMVETQ 296
Query: 397 GIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISH----GAQSPKLSKMLEVLV 452
G+ + L EKL + ++ SK L M++++ + PKL +++
Sbjct: 297 GLETLRKYL-EKLDSEASSKSASKAAKRLMDDLYMRKALYRVKECDVEHPKLELARKIVS 355
Query: 453 DHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQ 512
+ K K+P SRVI+F+N+R + + NAL+ ++ F+GQ S +KG +QK Q
Sbjct: 356 EQLK-KNP-DSRVIVFTNYRDTAEIVANALSGFSGII-PIRFVGQGSRNKNKGLTQKQQA 412
Query: 513 AVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+L+KFRAG YNV+VATS+ EEGLDI D+V+ ++ S +R IQR GRTGR+ GR+
Sbjct: 413 EILDKFRAGEYNVLVATSVAEEGLDIPATDMVLFYEPIPSEIRSIQRKGRTGRQQKGRV 471
>gi|413925497|gb|AFW65429.1| hypothetical protein ZEAMMB73_814845 [Zea mays]
Length = 747
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 195/608 (32%), Positives = 293/608 (48%), Gaps = 106/608 (17%)
Query: 495 IGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
+G G KGQSQK QQA+L+KFR+G YNV+VATSIGEEGLDI+EVDLVICFDANVSPL
Sbjct: 86 LGVHLGNQLKGQSQKTQQAILKKFRSGVYNVLVATSIGEEGLDIIEVDLVICFDANVSPL 145
Query: 555 RMIQRMGRTGRKHDGR---------------------------------IPHIFKPEVQF 581
RMIQRMGRTGRK++G+ +PH++KPEV++
Sbjct: 146 RMIQRMGRTGRKNEGQELQGYRKKQGDCRTMRKLLHNSERFEYHASPRMVPHVYKPEVKY 205
Query: 582 VELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPTSDSTWRPSLIAFPHF 641
V+L+I++Y+ KK++ +PI K++ A+ +I +YF + WRPSL+AFP F
Sbjct: 206 VKLTIDKYIPHAKKMRVAAKEASPI-PWKMSEADGQMITRYFSVCKEEVWRPSLVAFPRF 264
Query: 642 QALPSRVHKVMHSFR-TGMLIDMMQHLQGLTFSRDDRTFVEDEVSSDKHLGLQTVEPCET 700
Q PS VHKV HSFR T ML D M+ LQ + R + E+ + + VE E
Sbjct: 265 QLYPSVVHKVPHSFRTTDMLTDAMKQLQDPSLFR-----TKCEIPLQEPANVSAVE--EG 317
Query: 701 DERDNFHGTK------KVTDSELSTRTLGTQENHSMPQSCCKSPAAHAYLFGSDFISVDA 754
E + + + D ++ ++ EN S+P S K H + F D+++VD
Sbjct: 318 LEHEGLYAANGNEEMPQECDGLEASSSVVWNENVSVPGSPVKKYPVHTF-FSGDYVTVDR 376
Query: 755 LGKVLIISVPALPFKELSHSKKKRAPDTLLLNHWKQDSSPLKTSD---KNYDELTVQSKA 811
G VLI VP LP ++++ SK ++ + N + + P +++ + E + +
Sbjct: 377 RGSVLITYVPVLP-QKIAFSKDIKS--AVWNNKDQNKAKPYRSAAGVCRTTVEFVLGTNT 433
Query: 812 VEELTTSQAACIKDGALPISRFCRSDALPEKPLDGFEEILDSPVLRRNQLREEDTTDETL 871
+ L + + + PE G + + D+ VL + + E +
Sbjct: 434 DKHLFVDNLSTVAMHS------------PECSWHG-DNVDDNHVLTTVPSKTLTSPREKM 480
Query: 872 DV-NEIKEPLSPDDEYHNDLRDSELSPRLTNLIKSGVVPESPINENGASNNKGRNPDLAS 930
D +K P S Y D+ EL+ RLT ++ G+VPESP+ E S
Sbjct: 481 DTPCNVKLPES-TYSYQEDM---ELNSRLTVYMEEGIVPESPVVE-------------VS 523
Query: 931 PVKLCSIQPSKFASLGKTEKCSKYVRASQGNVSIS---PVNKKIQTPL------------ 975
++L + + F ++ K + NV+ S P+N + L
Sbjct: 524 HLRLEMDEAADFGAVPKRGSPKSRDERAHANVAGSHKGPLNFEKNDQLLCGENEFDGSSR 583
Query: 976 LKMNHTASAGGYSPTSP----IAEETKTPLANLANSSCSRDWRL-SSGDKSENVEPARKF 1030
L M A P P +A T+ N+ S S D++L S GD S +V+ A K+
Sbjct: 584 LYMLDQTRAKTEEPMHPSNVKMATTTRHTPGNMLCDSFSGDYQLRSGGDASGSVQQAPKY 643
Query: 1031 KRLRKVRD 1038
+RL K D
Sbjct: 644 RRLCKYGD 651
>gi|290559606|gb|EFD92934.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 508
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 152/480 (31%), Positives = 258/480 (53%), Gaps = 49/480 (10%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R+YQ I +T NTLV LPTGLGKT+I+A++ +P+ K++F AP++PL+ Q +
Sbjct: 11 REYQKNIFETCKSGNTLVVLPTGLGKTIISAMLADYRLEKYPNSKVLFLAPTKPLINQHM 70
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ NI+ I +G +S KR+ + ++ F TPQ +E DI++ L
Sbjct: 71 KTFSNIMDIKIGTA---SGSVSSKKRSEMYLENQLIFATPQTIENDIKNEVIDFSSFSLL 127
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
++DEAH GNY+Y ++ + IL LTA+P S+++ I+ I +NL I+ +E R+
Sbjct: 128 IVDEAHHTVGNYSYVKIAKDYTTGSAHPLILGLTASPASEREKIRTICNNLGITNVEIRS 187
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DVS Y+ N+++E+I V M E +++ ++ E+I L + GLL+N ++
Sbjct: 188 EEDPDVSPYIENKEVEVITVNMPLEIADLSIKVKEMINSAILELQSSGLLKNVQQSRINR 247
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYF--GALIT-----LYHIRRLLSSHGIRPAYE 403
V +L + + Q+ G Y G ++T LYH L+S+ + +
Sbjct: 248 VTILLLQKSLQ-------TQMFSGRRSFYLIRGIILTSKLMKLYHAYGLVSTQSLSAFFN 300
Query: 404 MLEEKLKQG------------SFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVL 451
L K+++G F + K ED L+++ I H PKL +++++L
Sbjct: 301 FL-VKIEKGKAKTDKELVSDPKFLQIKEKTED------LLKKGIEH----PKLEQLVQLL 349
Query: 452 VDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQ 511
++F ++D K IIF+ +R +V I + ++++ + ++ FIGQ G G SQK Q
Sbjct: 350 KNNF-SEDKK---AIIFAQYRDTVDAIYSRISSMEN-IRPVRFIGQGKG----GLSQKEQ 400
Query: 512 QAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
++ F +G YNV+V+TS+ EEG+ I VD+ + ++ S +R IQR GR GR G++
Sbjct: 401 VNIISDFESGVYNVLVSTSVSEEGMSIRGVDIAVFYETIPSAIRNIQRRGRVGRFAAGKV 460
>gi|88602972|ref|YP_503150.1| Hef nuclease [Methanospirillum hungatei JF-1]
gi|88188434|gb|ABD41431.1| helicase-like protein [Methanospirillum hungatei JF-1]
Length = 750
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 163/486 (33%), Positives = 251/486 (51%), Gaps = 33/486 (6%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG-KIVFAA 160
+I P + R YQF+I+ AL NTLV +PTGLGKT IA +V + R + +G K++ A
Sbjct: 8 FIAPETMEKRTYQFSISMNALEKNTLVVIPTGLGKTAIALIVAAS--RLYQNGGKVLMMA 65
Query: 161 PSRPLVMQQIEACHNIVGIPQEWTIDM---TGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
P++PLV Q + + IP + TG+ SP KR + W + TPQV++ D+
Sbjct: 66 PTKPLVEQHLRYFKAHLAIPGDEKTKFAMFTGEASPEKRTAEWMAASMVLATPQVIKNDL 125
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
+G + + L++DE HRA GNYAY M ILA+TA+PG ++ I I
Sbjct: 126 IAGRYDLTDVSLLIVDEGHRAVGNYAYVFIAERYMQTAKDPLILAMTASPGGNKEKISDI 185
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
++NL+I ++E R E+D DV YVH + +E+I V++ E + ++ +L
Sbjct: 186 VENLHIKSVESRTETDPDVRPYVHEKDVEIIRVDLPPELKAALEDLKALVADRLDQLKKA 245
Query: 338 GL-------LQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA-LITLYHI 389
G L + Q +S + + R R A G A A L+ L H
Sbjct: 246 GFPVTDQASLSMKTLQEVSAI--IQQRIAERDAS---------GFAAASIHAELMKLRHA 294
Query: 390 RRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIR---KVKLLMQQSISHGAQS-PKLS 445
L S G L + L +G+ ++ I + L+ +SI + PKL
Sbjct: 295 IGLAESQGCMVLKAYLNKLLAEGNAPGGSKASKRIAYDPRFMRLLNRSIEWKEECHPKLL 354
Query: 446 KMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKG 505
+L LV + P +R+I+F+ +R +V+ +++ L G + A F+G+++ KG
Sbjct: 355 -ILPELVQSILDESP-DTRIIVFATYRDTVKMVVDTLQAAG--ISAERFVGKANKDQEKG 410
Query: 506 QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
SQK Q A + +FR G ++V+VATS+GEEGLDI D+VI ++ S +R IQR GRTGR
Sbjct: 411 LSQKRQIATISRFREGEFSVLVATSVGEEGLDIPSTDVVIFYEPVPSEIRSIQRKGRTGR 470
Query: 566 KHDGRI 571
+ GRI
Sbjct: 471 HNTGRI 476
>gi|332158155|ref|YP_004423434.1| Hef nuclease [Pyrococcus sp. NA2]
gi|331033618|gb|AEC51430.1| Hef nuclease [Pyrococcus sp. NA2]
Length = 749
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 151/471 (32%), Positives = 251/471 (53%), Gaps = 51/471 (10%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ I N L+ LPTGLGKT+IA ++ Y ++ GK++ AP++PLV+Q
Sbjct: 11 RLYQELIYAKCKDRNCLIVLPTGLGKTIIAMMIADYRLNKY--GGKVLMLAPTKPLVLQH 68
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
E +P E + +TG+ISP +R W +V TPQ +E D+ G ++ +
Sbjct: 69 AETFRKFFNLPPEKIVALTGEISPNERVRAWARAKVIIATPQTVENDLLVGRISLEDVSL 128
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
++ DEAHRA GNYAY RE + ++ LTA+PGS + I+ ++DNL I +EYR
Sbjct: 129 IIFDEAHRAVGNYAYVYIAREYLKQAKNPLVIGLTASPGSTPEKIKEVLDNLGIEHIEYR 188
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
+E+ DV YV K E ++VE+ + E+ + E+++ TL
Sbjct: 189 SENSPDVKPYVQGIKFEWVKVELPELYKEVRKLLREMLK-----------------DTLK 231
Query: 350 PVDLLNSRDKFRQAPPPNLPQ---IKFGEV--------------EAYFGAL-ITLYHIRR 391
P+ + F + P++P+ +K G++ F A+ + L+H
Sbjct: 232 PL----AEAGFIDSSSPDIPKREVLKAGQIINEEMAKGNHDLRKYLLFHAMALKLHHAIE 287
Query: 392 LLSSHG---IRPAYEMLEEKLKQGS--FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSK 446
LL + G +R + L E+ K GS ++ + + ++K L+ Q+ G PKL+
Sbjct: 288 LLETQGLSALRVYLKKLYEEAKTGSTRASKELFLDRRMKKALALLLQAKELGLDHPKLN- 346
Query: 447 MLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQ 506
+L+ L+ K P +S++I+F+N+R + + ++ L G ++A F+GQ+S + +G
Sbjct: 347 VLKKLIKEQLEKKP-NSKIIVFTNYRETAKKVVEELTKEG--IEARRFVGQASRENDRGM 403
Query: 507 SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
SQ+ Q+ +L+ F G +NV+VATS+GEEGLD+ EVDLVI ++ S +R +
Sbjct: 404 SQREQKIILDMFSRGEFNVLVATSVGEEGLDVPEVDLVIFYEPVPSAIRSV 454
>gi|336476206|ref|YP_004615347.1| helicase domain-containing protein [Methanosalsum zhilinae DSM
4017]
gi|335929587|gb|AEH60128.1| helicase domain protein [Methanosalsum zhilinae DSM 4017]
Length = 776
Score = 229 bits (583), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 149/472 (31%), Positives = 249/472 (52%), Gaps = 19/472 (4%)
Query: 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167
V R YQ + AL +LV LPTGLGKT++A +V+ + G+I+ +P++PLV
Sbjct: 19 VEKRLYQLNLAGEALKKPSLVVLPTGLGKTIVALMVMVARLEKY-GGRILLLSPTKPLVE 77
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYL 227
Q N++ I + + TG +SP KRA W ++ TPQV+E D+ + + +
Sbjct: 78 QHSLFLRNVLEIEESSILTFTGSLSPAKRAELWNQGQIIISTPQVIENDLIARRIDLGDV 137
Query: 228 VCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLE 287
+ DEAHRA GNYAY + ILA+TA+PGS + + + ++L I ++
Sbjct: 138 SHITFDEAHRAVGNYAYSFISEKYFQSCENPHILAITASPGSSSEKVNQVCESLRIESVI 197
Query: 288 YRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQT 347
+ E D DV Y+H + IE + V + E +I + ++ +L+ G + +T
Sbjct: 198 VKTEQDSDVVPYIHKKDIEWVHVNLPDELKKIKELLERIMDDRFKKLAEAGYPVSNPRKT 257
Query: 348 LSPVDLLNSRDKF----RQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYE 403
S ++L + + R P P Q+ G + ++ + H + + GI
Sbjct: 258 -SKTEILGMQKRLQSQLRGYPDP---QVYTGL--SLIAEIMKVNHAIEVAETQGIESLTR 311
Query: 404 MLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISH----GAQSPKLSKMLEVLVDHFKTKD 459
++ +L+ + ++ SK L M+Q + + PKL+ + ++ D + K+
Sbjct: 312 YIQ-RLENEAGSKGGSKASRRLGEDLYMRQVVHRLKGLDLEHPKLNYVKNIVQDQLQ-KN 369
Query: 460 PKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
P+ SRVI+F+N+R + D++ + + + + F+GQSS KG +QK Q ++EKF+
Sbjct: 370 PE-SRVIVFTNYRDTA-DMVTCMLSEVEGISPVRFVGQSSKYKDKGLTQKQQVEIIEKFK 427
Query: 520 AGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+G +NV+VATS+ EEGLDI DLV+ ++ S +R IQR GRTGRKH GR+
Sbjct: 428 SGDFNVLVATSVAEEGLDIPATDLVLFYEPVPSEIRSIQRKGRTGRKHRGRV 479
>gi|397780382|ref|YP_006544855.1| fanconi anemia group M protein [Methanoculleus bourgensis MS2]
gi|396938884|emb|CCJ36139.1| fanconi anemia group M protein [Methanoculleus bourgensis MS2]
Length = 773
Score = 229 bits (583), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 157/479 (32%), Positives = 250/479 (52%), Gaps = 34/479 (7%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ ++ AL +NT+V LPTGLGKT +A +V + + GK++ AP++PLV Q +
Sbjct: 17 RRYQLSVMLRALDANTMVVLPTGLGKTAVALLVAASRL-YSHQGKVLMLAPTKPLVEQHL 75
Query: 171 EACHNIVGI-----PQEWTIDM-TGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM 224
+ PQE M TG P +RA+ W+ R+ F TPQV++ D +G +
Sbjct: 76 RFFKQFLLFQEGSEPQESDFVMFTGDTPPDERAAAWEACRICFATPQVVKNDCLAGRYSL 135
Query: 225 KYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYIS 284
+V LV+DE HRA GNYAY + + +LA+TA+PG Q +Q + +NLYI
Sbjct: 136 ADVVLLVVDECHRAVGNYAYVFIAQHYCTTARNPLLLAMTASPGGDQAKVQEVCNNLYIE 195
Query: 285 TLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ--- 341
+E R E+D+DV Y+H R+++ I+V + + E+ + + R SRL+ + L
Sbjct: 196 AVETRVETDEDVRPYIHEREVQYIDVYLPE---ELQAALLALRRLVESRLARLAKLNFHV 252
Query: 342 -NRDYQTLSPVDLLNS--RDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGI 398
D ++ ++ LN+ + + R P + + L H L + G
Sbjct: 253 PKPDKLSIKALNRLNAQIQQRIRSRDPSGFT------AASLHAECMKLRHAISLTETQG- 305
Query: 399 RPAYEMLEEKLKQ------GSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLV 452
A ++ ++L GS A N+ I + L+ + G PK S + E LV
Sbjct: 306 SEALKLYLDRLSAEGASSTGSKASRRLVNDPIYQ-NLVEEAGRWGGELHPKASIVCE-LV 363
Query: 453 DHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQ 512
P+ SR+I+F+ +R +V+ +++AL+ G + F+GQ+S +G +QK Q
Sbjct: 364 QAQLAAHPE-SRIIVFATYRDTVQTLVDALSGCG--IACERFVGQASRDTERGLTQKEQI 420
Query: 513 AVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+L +FR G + ++ATS+GEEGLD+ D+VI ++A S +R IQR GRTGR G I
Sbjct: 421 EILSRFREGEFRCLIATSVGEEGLDVPSTDMVIFYEAVPSEIRSIQRKGRTGRSGSGTI 479
>gi|16082461|ref|NP_394951.1| RNA helicase (RIG-I) [Thermoplasma acidophilum DSM 1728]
gi|10640841|emb|CAC12619.1| RNA helicase (RIG-I) related protein [Thermoplasma acidophilum]
Length = 508
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 156/473 (32%), Positives = 249/473 (52%), Gaps = 35/473 (7%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R+YQ + K ++ NTL+ +PTGLGKT+IAA+ I F+ + + AP++PLV+Q
Sbjct: 6 REYQLNVFKNSIGQNTLIVMPTGLGKTIIAAMFIEKFYG--EKKRSLMVAPTKPLVLQHA 63
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ GI + TG+I +R W TK++F TPQV+ D++SG + +
Sbjct: 64 RTIADSTGISENEIGVFTGEIDAEERELIWVTKKIFVSTPQVVFNDMRSGILDITKFDLI 123
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
+ DEAHRA GNYAY +E + +L I+ LTA+PGS ++ I I+ NL IS + +
Sbjct: 124 IFDEAHRAVGNYAYVDIAQEYLKYKKKL-IIGLTASPGSSREKIDEIMANLGISKVIAKT 182
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEV----IRPYTSRLSAIGLLQNRDYQ 346
E D+DV YV ++LI++ EI N I V + P S +IG +
Sbjct: 183 EMDEDVRKYVKTIDVKLIKIREPDGTKEIVNMIDAVMSKLLEPVKSSNFSIGRSRKDLVA 242
Query: 347 TLSPVDLLNSRDKFR---QAPPPNLPQIKFGEVEAYF---GALITLYHIRRLLSSH--GI 398
T+ V +NS + R Q I+ ++ Y G + L+++ + S GI
Sbjct: 243 TMQKV--INSAKEDRSLFQLVRRITAAIRLDYLKEYIETQGIDVALHYLEEMEKSQDPGI 300
Query: 399 RPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTK 458
R A ML S F + + KL++ + G +PK+ K L ++ ++
Sbjct: 301 RRAISML------SSLDEFAT-----LRTKLMLA---ADGYTNPKMEKTLSIM----ESN 342
Query: 459 DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518
++R I+F+++R + +M+ + G +K FIGQ+ + +G SQ Q+ ++E F
Sbjct: 343 VHGNARAIVFTHYRITSDLLMDYIQKNGTSLKPVRFIGQADRGSDEGLSQDQQKKIIEDF 402
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ YNV++ATSI EEGLDI + D VI ++A S +R IQR GRTGR +G++
Sbjct: 403 KNNVYNVLIATSIAEEGLDIPDTDFVIFYEAVPSEIRYIQRKGRTGRSRNGQV 455
>gi|219851698|ref|YP_002466130.1| Hef nuclease [Methanosphaerula palustris E1-9c]
gi|219545957|gb|ACL16407.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
E1-9c]
Length = 754
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 165/527 (31%), Positives = 266/527 (50%), Gaps = 42/527 (7%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P ++ R+YQ AIT AL NT+V LPTGLGKT IA +V + GK++ AP
Sbjct: 9 LIRPESLESREYQLAITVHALEQNTMVVLPTGLGKTAIALLVAASRL-LNHQGKVLVMAP 67
Query: 162 SRPLVMQQIEACHNIVGIPQEWT---IDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
+RPLV Q + + + + TG P +R + W+ + F TPQV++ D
Sbjct: 68 TRPLVEQHFRFFSKFLQTKEGESFPAVLFTGDTPPAERKAGWEQATLCFATPQVIKNDCI 127
Query: 219 SGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHII 278
+G + + L++DE HRA GNYAY + + +LA+TA+PG Q+ ++ +
Sbjct: 128 AGRYSLADVTLLIVDECHRAVGNYAYGFITERYLETARRPLVLAMTASPGGDQEKVREVQ 187
Query: 279 DNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIG 338
L IS +E R E D DV YVH R ++ + V + +E +RI +++ L +
Sbjct: 188 QTLGISCIESRVEQDPDVKPYVHERSLDYVSVVLPEELKTARDRINQLLDDRLDTLRELK 247
Query: 339 -LLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGE-------VEAYFGALITLYHIR 390
++ R+ ++ + LN++ Q + GE + + L+ L H
Sbjct: 248 FMVPPRERLSMRELHGLNAQ-----------IQTRIGERDSAGFAAASLYAELMKLRHAL 296
Query: 391 RLLSSHGIRPAYEMLEEKLKQG------SFARFMSKNEDIRKVKLLMQQSISH-GAQSPK 443
L + G LE+ +G +R +++ + L+++ S G PK
Sbjct: 297 TLAEAQGSMALTAFLEKIALEGMSGSGSKASRHLAEEPAFQD---LLERCRSFPGEVHPK 353
Query: 444 LSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKAS 503
+ + E LV + P+ SR+I+F+ FR +V+ ++N LA IG +++ F+GQ+ +
Sbjct: 354 VGLVGE-LVQKQLLEHPE-SRIIVFATFRDTVQQLVNHLADIG--IESERFVGQAKKDSE 409
Query: 504 KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
KG +QK Q A L++FR G + V++ATS+GEEGLD+ DLVI ++A S +R IQR GRT
Sbjct: 410 KGLTQKKQIAALQRFRDGEFRVLIATSVGEEGLDVPSTDLVIFYEAVPSEIRSIQRKGRT 469
Query: 564 GRKHDGRIPHIFKPEVQ-----FVELSIEQYVSRGKKVKDDHAITTP 605
GR +G I + Q +V + E+ + G K H TP
Sbjct: 470 GRSGEGSIIVLVTKGTQDETFRYVSQAREKSMRAGMKAIRAHQAATP 516
>gi|432331590|ref|YP_007249733.1| ERCC4-like helicase [Methanoregula formicicum SMSP]
gi|432138299|gb|AGB03226.1| ERCC4-like helicase [Methanoregula formicicum SMSP]
Length = 749
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 162/493 (32%), Positives = 253/493 (51%), Gaps = 42/493 (8%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKT----LIAAVVIYNFFRWFPDGKIV 157
I P ++ R+YQ +I AL NT+V LPTGLGKT L+AA I+N G+++
Sbjct: 8 LIKPESIESREYQLSIAMRALDGNTMVILPTGLGKTAVALLVAASRIHN-----EGGRVL 62
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTID--------MTGQISPTKRASFWKTKRVFFVT 209
AP++PLV Q + + D TG+ P +R + W V T
Sbjct: 63 MLAPTKPLVEQHLRYFERYLLAKSPAGDDASASPFAMFTGEAPPDERTADWNRASVILAT 122
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQV++ DI +G + + LV+DE HRA GNYAY + M+ + ILA+TA+PG
Sbjct: 123 PQVIKNDIIAGRYTLSDVTLLVVDECHRAVGNYAYVFLAQRYMATADKPLILAMTASPGG 182
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMG---QEAVEINNRIWEV 326
Q+ +Q + NL I+ +E R E+D DV YV R++E + +++ + A++ N + E
Sbjct: 183 AQEKVQEVCANLGIAHVETRTENDPDVRPYVFERELEYVTIDLPPDLKAAIQTINALIE- 241
Query: 327 IRPYTSRLSAIGLLQ----NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA 382
RL + L R+ ++ + +N++ + R A N F Y
Sbjct: 242 -----DRLGVLASLHFSVPKREKLSMRELSAINAQIQQRIA---NRDSAAFSAASVY-AE 292
Query: 383 LITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDI---RKVKLLMQQSISHGA 439
L+ L H L S G L + +G+ A ++ + R + L ++S+
Sbjct: 293 LMKLKHAVVLAESQGSEVLKGYLAKLYAEGTGAGGSKASQRLVQDRSFRELFERSVEWPR 352
Query: 440 Q-SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQS 498
+ PK L ++ D +SR+IIF+ +R +V+ +++ LA G + + F+GQ+
Sbjct: 353 ELHPKPEVALGLVRQQL--TDSPNSRIIIFATYRDTVQLLVDYLAKHG--IDSERFVGQA 408
Query: 499 SGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558
+ A KG SQK+Q A L +FR G + V+VATS+GEEGLD+ DLVI ++A S +R IQ
Sbjct: 409 TKDAEKGLSQKMQIAALTRFREGVFKVLVATSVGEEGLDVPSTDLVIFYEAVPSEIRSIQ 468
Query: 559 RMGRTGRKHDGRI 571
R GRTGR GR+
Sbjct: 469 RKGRTGRSGAGRV 481
>gi|363752227|ref|XP_003646330.1| hypothetical protein Ecym_4473 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889965|gb|AET39513.1| hypothetical protein Ecym_4473 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1011
Score = 227 bits (579), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 150/448 (33%), Positives = 231/448 (51%), Gaps = 43/448 (9%)
Query: 89 LCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF 148
LC+ Q+++ +IYP N VRDYQ+ I K ALF N L A+PTG+GKT IA+ V+ N+F
Sbjct: 71 LCYDQLNS-----FIYPTNYEVRDYQYEIVKRALFENVLCAIPTGMGKTFIASTVMLNYF 125
Query: 149 RWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFV 208
RW + KI+F AP+RPLV QQI+AC + GIP T + + S R W KRVFF
Sbjct: 126 RWTKNAKIIFTAPTRPLVAQQIKACLGVTGIPYNQTAILLDK-SRKHREQIWAEKRVFFA 184
Query: 209 TPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPG 268
TPQV+E D++ G K +V +VIDEAHRA G+YAY + + R+LALTATP
Sbjct: 185 TPQVIENDLKRGVLNPKDIVLVVIDEAHRARGSYAYVEVTKFIERFNTSYRMLALTATPA 244
Query: 269 SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIR 328
+ + +Q +++NL IS +E R E +D+ Y+ R E + V E +I +I
Sbjct: 245 TDIEGVQEVVENLQISKIEIRTEESEDIVKYMKRRDYEKVNVPFTSEIEDIIEQIGIAAT 304
Query: 329 PYTSRLSAIGLLQNRDYQTLSPVDL---LNSRDKFRQAPPPNLPQ-IKFGEVEAYFG--A 382
P +GL Y PV++ + + R ++P+ +K+ + YF
Sbjct: 305 PVLKEAVQLGL-----YDDCEPVNINAYVAMQQSQRLISNSSIPEGVKW---KNYFTLQL 356
Query: 383 LITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNED-----------IRKVKLLM 431
L + H+ + L +GIR Y + K ++ + + K+++ ++ V
Sbjct: 357 LSHVGHMLKRLKIYGIRTFYSYFDNKYREFTTKCELGKSKNKTAQSFYSSPILKNVIKTC 416
Query: 432 QQSIS------HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI 485
Q+ +S HG KL + L F + SRVIIF+ R S +I+ + +
Sbjct: 417 QRYLSVPEFLGHG----KLQCVRNELSTFFVNVNA-DSRVIIFTELRESALEIVKCIDDM 471
Query: 486 GDL-VKATEFIGQSSGKASKGQSQKVQQ 512
D + FIGQ+ GK Q++ +++
Sbjct: 472 NDKSFRPHIFIGQARGKEGFDQTEYIRK 499
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 61/84 (72%)
Query: 488 LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
L++++ G S G SQK Q+ V+ KF+ G YNV+V TSIGEEGLDI EVD++IC+
Sbjct: 533 LLRSSRRTGSSEEAQITGMSQKQQKEVISKFKKGEYNVLVCTSIGEEGLDIGEVDMIICY 592
Query: 548 DANVSPLRMIQRMGRTGRKHDGRI 571
D SP++ IQRMGRTGRK DGRI
Sbjct: 593 DTTSSPIKNIQRMGRTGRKRDGRI 616
>gi|126179364|ref|YP_001047329.1| Hef nuclease [Methanoculleus marisnigri JR1]
gi|125862158|gb|ABN57347.1| helicase domain protein [Methanoculleus marisnigri JR1]
Length = 751
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 167/500 (33%), Positives = 251/500 (50%), Gaps = 60/500 (12%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
I P ++ R YQ +I AL +NT+V LPTGLGKT +A +V + P G+++ AP+
Sbjct: 9 IRPESIEERRYQLSIALRALDANTMVVLPTGLGKTAVALIVAASRLHSHP-GRVLVLAPT 67
Query: 163 RPLVMQQIEACHNIVGI-----PQEWTIDM-TGQISPTKRASFWKTKRVFFVTPQVLEKD 216
+PLV Q + + I P E M TG P +RA W+ RV F TPQV++ D
Sbjct: 68 KPLVEQHLRFFKQFLLIRDGSEPDESDFAMFTGDTPPAERARAWEACRVCFATPQVIKND 127
Query: 217 IQSGTCLMKYLVCLVIDEAHRATGNYA-------YCTAIRELMSVPVQLRILALTATPGS 269
+G + +V LV+DE HRA GNYA YCTA ++ + +LA+TA+PG
Sbjct: 128 CLAGRYSLADVVLLVVDECHRAVGNYAYVFLAGHYCTAAKDPL-------LLAMTASPGG 180
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
Q +Q + +NL I +E R E+D+DV Y+H R I+ ++V + +E V+R
Sbjct: 181 DQAKVQEVCNNLRIEAVETRVETDEDVRPYIHERDIQYVDVYLPEEL----QAALVVLRG 236
Query: 330 YT-SRLSAIGLLQNR----DYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI 384
SRL + L R D ++ ++ LN++ + R I+ + A+ A +
Sbjct: 237 LVESRLGRLAKLNFRVPKPDKLSMKALNALNAQIQQR---------IRTRDPSAFIAASL 287
Query: 385 TLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKN-------EDIRKVKLLMQQSISH 437
H + H I A E LK AR ++ R V +S+
Sbjct: 288 ---HAECMKLRHAISLAETQGSEALKH-YLARLGAEGVSSAGSKASKRLVADPAYKSLVE 343
Query: 438 GAQS------PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKA 491
A PK S + E++ SR+I+F+ +R +V+ +++ L G +
Sbjct: 344 AAAGWKEELHPKASIVRELVRAQLAAH--PESRIIVFATYRDTVQTLVDTLTAAG--IAC 399
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
F+GQ+S A +G SQK Q A L +FR G + +VATS+GEEGLD+ D+VI ++A
Sbjct: 400 ERFVGQASRDAERGLSQKEQIASLARFREGEFRCLVATSVGEEGLDVPSTDMVIFYEAVP 459
Query: 552 SPLRMIQRMGRTGRKHDGRI 571
S +R IQR GRTGR G I
Sbjct: 460 SEIRSIQRKGRTGRSGSGTI 479
>gi|268325930|emb|CBH39518.1| putative ATP-dependent RNA helicase [uncultured archaeon]
Length = 780
Score = 227 bits (578), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 153/486 (31%), Positives = 258/486 (53%), Gaps = 44/486 (9%)
Query: 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167
V R YQ AI + A + +V LPTGLGKT IA V+ N GK++F AP+RPLV
Sbjct: 20 VERRRYQIAIAREARKESLMVVLPTGLGKTTIALFVLIN---RLAKGKVLFLAPTRPLVE 76
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYL 227
Q ++++ I +TG + KRA W ++ TPQ++E D+ S + +
Sbjct: 77 QHSAFLNDVLNIDPSVIQTLTGNVLADKRAKLWDDAKIIVSTPQIIENDLLSNRINLSAV 136
Query: 228 VCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLE 287
++ DE HRA GNY+Y + + +L +TA+PGS ++ I+ I +L + +E
Sbjct: 137 SLIIFDECHRAVGNYSYVYIAEKYAEQAIAPLVLGMTASPGSDKEKIKEICISLGVKKVE 196
Query: 288 YRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE-VIRPYTSRLSAIGLLQNRDYQ 346
R E D DV+ Y+H ++IE +++ A++ R+ + ++ L +G ++ + +
Sbjct: 197 SRTEYDTDVAPYIHKKEIEWRTLDVPV-AIKKQKRLLDAILDERIGELQKLGYVRKKRGK 255
Query: 347 TLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLE 406
++ +LL + R L K ++ + AL + + I+ A E++E
Sbjct: 256 DVTKKELL----ELRTIITVQLASQKHADL---YKALSLQAEVLK------IKHAIELIE 302
Query: 407 EKLKQGSFA--RFMS--KNEDIRK------VKLL--------MQQSISHGAQSPKLSKML 448
QG FA R+ KNE + K +LL M + S+ + PKL+ ++
Sbjct: 303 ---TQGIFAVNRYFGRLKNEALSKEGSKAAKRLLRDDRFVDAMSMAASYEGEHPKLNAVI 359
Query: 449 EVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALA---TIGDLVKATEFIGQSSGKASKG 505
++L + F+ +P ++R+I+F+N+R + I++ L + + ++A +FIGQ++ KG
Sbjct: 360 QILREEFRV-NP-NTRIIVFTNYRDTAEMIISGLQDRNSEEEGIRAVKFIGQATKAEDKG 417
Query: 506 QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
QK Q ++ KF+AG YNV+VATS+ EEGLDI DLV+ ++ S +R IQR GRT R
Sbjct: 418 LKQKEQVEIITKFKAGDYNVLVATSVAEEGLDIPATDLVLFYEPIPSAIRSIQRKGRTAR 477
Query: 566 KHDGRI 571
K G++
Sbjct: 478 KKVGKV 483
>gi|374628568|ref|ZP_09700953.1| helicase domain-containing protein [Methanoplanus limicola DSM
2279]
gi|373906681|gb|EHQ34785.1| helicase domain-containing protein [Methanoplanus limicola DSM
2279]
Length = 776
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 161/499 (32%), Positives = 247/499 (49%), Gaps = 56/499 (11%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P ++ R YQ +I AL NT+V LPTGLGKT +A + + + GK++ AP
Sbjct: 8 LIKPDSLEERRYQLSIAVHALEGNTMVVLPTGLGKTAVALLTTASRLKT-AGGKMLMMAP 66
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDM------TGQISPTKRASFWKTKRVFFVTPQVLEK 215
++PLV Q ++ P+ D TG+ ++R W+ RV TPQV++
Sbjct: 67 TKPLVDQHRRMFTELLIEPENPDDDFSGFAFFTGETKTSQRKEMWEKSRVILATPQVIKN 126
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
DI +G +K + L++DE HRA GNYAY M ILA+TA+PGSK++ +
Sbjct: 127 DIIAGRYSLKDVTLLIVDECHRAVGNYAYAFIAESYMQTGKNPLILAMTASPGSKEEKVH 186
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335
+ +NL I +E R E D DV Y+H R++E + VE+ ++ E + ++ + LS
Sbjct: 187 EVCENLTIKIVESRTEDDPDVKPYIHEREVEYVNVELPEKLEESVGILKSILEKRLNTLS 246
Query: 336 AIGLLQNR-DYQTLSPVDLLNS---RDKFRQAPPPNLP------------QIKFGEVEAY 379
+G R D ++ ++ +N+ R+ ++ P L + GE +
Sbjct: 247 DMGYTVPRPDKLSMKELNGINAQVQRNIQKREPDAFLAASIHAEIMKIRHAVTLGESQ-- 304
Query: 380 FGALITLYHIRRL----LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSI 435
G+ I ++ +L S G + + + Q AR E+I
Sbjct: 305 -GSTILKGYLNKLAGEAFSPSGSKAGKRLAADHTFQDLLARSDGWKEEIH---------- 353
Query: 436 SHGAQSPKLSKMLEVL---VDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKAT 492
PK K+ E++ +D F SR+++F+NFR +V + L G +
Sbjct: 354 ------PKPDKVAEIVRAQLDEF-----PDSRILVFANFRDTVNLLSERLNKEG--FECA 400
Query: 493 EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
FIGQ+S + KG SQK Q L KFR G + V+VATS+GEEGLD+ DLVI ++A S
Sbjct: 401 RFIGQASRDSEKGLSQKKQIETLSKFREGEFRVLVATSVGEEGLDVPSTDLVIFYEAVPS 460
Query: 553 PLRMIQRMGRTGRKHDGRI 571
+R IQR GRTGR G+I
Sbjct: 461 EIRSIQRKGRTGRHGSGKI 479
>gi|195136690|ref|XP_002012487.1| GI16508 [Drosophila mojavensis]
gi|193906452|gb|EDW05319.1| GI16508 [Drosophila mojavensis]
Length = 293
Score = 226 bits (577), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 123/280 (43%), Positives = 164/280 (58%), Gaps = 15/280 (5%)
Query: 63 DKFFGNLGPKPQGTEE--FNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKT 120
D+ G L P +E +E FDES A +W+YP N+P+R YQ +I +
Sbjct: 18 DEALGKLLDTPTKSEPKVISECVGFDES---------AGNSWLYPSNLPLRSYQHSIVQA 68
Query: 121 ALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIP 180
AL+ NTLV LPTGLGKT IAAVV+YN RW+P+ K++F AP+RPLV QQI AC I+
Sbjct: 69 ALYRNTLVVLPTGLGKTFIAAVVMYNLHRWYPESKLIFMAPTRPLVAQQIAACQKIMPFC 128
Query: 181 QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKD-IQSGTCL-MKYLV--CLVIDEAH 236
E T+++TG++ KRA W TKRVFF TPQV++ D + +G L Y+ LV+DEAH
Sbjct: 129 PEDTVELTGRLPRAKRAELWATKRVFFATPQVVQSDMLDTGDGLQFPYMSIKLLVVDEAH 188
Query: 237 RATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDV 296
RA G YAY LM+ R+LAL+ATPG + + + NL IS LE R + DV
Sbjct: 189 RAKGRYAYTQVTDSLMARNPYFRMLALSATPGRTMEDVAAVCRNLCISHLEVRWDDSIDV 248
Query: 297 SSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSA 336
YVH R + I V + E ++ ++I PY LS
Sbjct: 249 RQYVHKRSMRTIVVPLNDRIKEPRAQLLQIIDPYLQPLSG 288
>gi|15669699|ref|NP_248512.1| Hef nuclease [Methanocaldococcus jannaschii DSM 2661]
gi|3915469|sp|Q58900.2|Y1505_METJA RecName: Full=Putative ATP-dependent RNA helicase MJ1505
gi|2826423|gb|AAB99518.1| ATP dependent RNA helicase, putative [Methanocaldococcus jannaschii
DSM 2661]
Length = 778
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 159/473 (33%), Positives = 248/473 (52%), Gaps = 25/473 (5%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P + R YQ I AL TL L TGLGKT IA +VI DGK++ AP
Sbjct: 7 LIKPKTLEARLYQQIIAANALKKKTLCVLSTGLGKTAIAILVIAGILTK-KDGKVLILAP 65
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
SRPLV Q ++ I ++ I +TG+I P KRA +K ++F TPQV+E DI +G
Sbjct: 66 SRPLVEQHYNRLKQVLNIDEDKIIALTGKIQPKKRAELYKKGKIFIATPQVIENDIIAGR 125
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+ + L+ DEAH TG++AY ++ + IL LTA+PGS + I +NL
Sbjct: 126 INVDEFILLIADEAHHTTGDHAYAFVAKKFKD---KCHILGLTASPGSDIDKVMEICENL 182
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
I +E R E D+DV Y+ K+ I +++ E I E ++ L G++
Sbjct: 183 GIEHVEVRTEDDEDVKPYIAKVKLIPIRIDLPNEFKRALKLINEALKERLKILKDAGVIN 242
Query: 342 N-RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRP 400
+ D ++L N + + ++K+ ++ AL L H + LL S G
Sbjct: 243 SIADVTKTELIELNNKLFSYDE-------EVKYELIKVCSEAL-KLMHAKELLESQGKSV 294
Query: 401 AYEMLEE-KLKQGSFARFMSKNEDIRK-VKLLMQQSISHGAQSPKLSKMLEVLVDHFKTK 458
+ + +++ A+ + +E +R+ V LLM+ + H PKL K+++ +V + K
Sbjct: 295 FLNYINKLSMQRTKSAKSIVNDEKVREAVNLLMKSDVEH----PKLGKVVD-MVKNILEK 349
Query: 459 DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518
+ K R+IIF+ +R +V I+N L G +KA FIGQ++ K KG SQK Q +E+F
Sbjct: 350 N-KDERIIIFAQYRDTVEKIVNLLTQNG--IKAIRFIGQAN-KEGKGMSQKEQIEAIERF 405
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ G +V+V+TS+ EEG+DI V+ +I ++ S +R IQR GR R G++
Sbjct: 406 KKEG-SVLVSTSVSEEGIDIPSVNYIIFYEPVPSEIRFIQRRGRAMRGEGGKV 457
>gi|2127880|pir||H64487 eIF-4A family probable ATP-dependent RNA helicase homolog -
Methanococcus jannaschii
Length = 784
Score = 226 bits (576), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 159/473 (33%), Positives = 248/473 (52%), Gaps = 25/473 (5%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P + R YQ I AL TL L TGLGKT IA +VI DGK++ AP
Sbjct: 13 LIKPKTLEARLYQQIIAANALKKKTLCVLSTGLGKTAIAILVIAGILTK-KDGKVLILAP 71
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
SRPLV Q ++ I ++ I +TG+I P KRA +K ++F TPQV+E DI +G
Sbjct: 72 SRPLVEQHYNRLKQVLNIDEDKIIALTGKIQPKKRAELYKKGKIFIATPQVIENDIIAGR 131
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+ + L+ DEAH TG++AY ++ + IL LTA+PGS + I +NL
Sbjct: 132 INVDEFILLIADEAHHTTGDHAYAFVAKKFKD---KCHILGLTASPGSDIDKVMEICENL 188
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
I +E R E D+DV Y+ K+ I +++ E I E ++ L G++
Sbjct: 189 GIEHVEVRTEDDEDVKPYIAKVKLIPIRIDLPNEFKRALKLINEALKERLKILKDAGVIN 248
Query: 342 N-RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRP 400
+ D ++L N + + ++K+ ++ AL L H + LL S G
Sbjct: 249 SIADVTKTELIELNNKLFSYDE-------EVKYELIKVCSEAL-KLMHAKELLESQGKSV 300
Query: 401 AYEMLEE-KLKQGSFARFMSKNEDIRK-VKLLMQQSISHGAQSPKLSKMLEVLVDHFKTK 458
+ + +++ A+ + +E +R+ V LLM+ + H PKL K+++ +V + K
Sbjct: 301 FLNYINKLSMQRTKSAKSIVNDEKVREAVNLLMKSDVEH----PKLGKVVD-MVKNILEK 355
Query: 459 DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518
+ K R+IIF+ +R +V I+N L G +KA FIGQ++ K KG SQK Q +E+F
Sbjct: 356 N-KDERIIIFAQYRDTVEKIVNLLTQNG--IKAIRFIGQAN-KEGKGMSQKEQIEAIERF 411
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ G +V+V+TS+ EEG+DI V+ +I ++ S +R IQR GR R G++
Sbjct: 412 KKEG-SVLVSTSVSEEGIDIPSVNYIIFYEPVPSEIRFIQRRGRAMRGEGGKV 463
>gi|296109929|ref|YP_003616878.1| DEAD/DEAH box helicase domain protein [methanocaldococcus infernus
ME]
gi|295434743|gb|ADG13914.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
ME]
Length = 770
Score = 226 bits (575), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 165/470 (35%), Positives = 253/470 (53%), Gaps = 26/470 (5%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
+I P + R YQ I +AL NTLV LPTGLGKT IAA+VI DGK++ AP
Sbjct: 7 FIKPNKLEARIYQQLIAASALKDNTLVVLPTGLGKTAIAALVIAGLLTK-KDGKVLIIAP 65
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
+RPLV Q +I+ I + + +TG+I P KR ++ ++F TPQV+E DI SG
Sbjct: 66 TRPLVEQHYRTFKDILNI--DGIVAITGKIPPAKREKIYREGKIFIATPQVIENDILSGR 123
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+ + L+ DEAH GN+AY + S + ILALTA+PG + I +NL
Sbjct: 124 LKVDDFILLIADEAHHTVGNHAYAFVAK---SFKDKCHILALTASPGHDVDKVMEICENL 180
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
I +E+R+ESD+DV YV ++ I VE+ +E + + + ++ L G++
Sbjct: 181 GIKRIEFRDESDEDVKPYVAKVRMIPIRVELLEEFKKALKLLDDALKERLKFLKDHGVI- 239
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPA 401
D ++ +LL +K ++K+ ++ AL +Y + LL S G
Sbjct: 240 --DSINVTKTELLELNNKLFSYD----DEVKYELIKKCSEALKLMYA-KELLESQGKDVF 292
Query: 402 YEMLEE-KLKQGSFARFMSKNEDIRK-VKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKD 459
+ +E+ L++ A+ + +E ++K V LL ++ H PK K+LE L+ K+
Sbjct: 293 LKYIEKLSLQRSKSAKNVVCDERVKKAVNLLKSLNVEH----PKYPKLLE-LIKSILEKN 347
Query: 460 PKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
K R+I+F+ +R +V I++ L G +KA +FIGQS + KG SQK Q +E+F+
Sbjct: 348 -KDERIIVFAQYRDTVDKIVSLLEKNG--IKAIKFIGQSC-RDGKGMSQKQQVEAIERFK 403
Query: 520 AGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDG 569
G V+V+TS+ EEG+DI V+ VI F+ S +R IQR GR R G
Sbjct: 404 REG-QVLVSTSVSEEGIDIPAVNYVIFFEPVPSEIRTIQRRGRAMRGEGG 452
>gi|304313782|ref|YP_003848929.1| helicase [Methanothermobacter marburgensis str. Marburg]
gi|302587241|gb|ADL57616.1| predicted helicase [Methanothermobacter marburgensis str. Marburg]
Length = 736
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 141/461 (30%), Positives = 240/461 (52%), Gaps = 16/461 (3%)
Query: 102 WIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160
I P V R YQ + L N+++ PT LGKT++A +V + + +++ +
Sbjct: 9 LIKPGTVEARTYQQLLAADVLRKGNSMIVAPTALGKTIVAVLVAAERLQKYRGSRVLILS 68
Query: 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
PS+PL +Q E+ + + P +TG I+P +R W RV TPQ +E DI +G
Sbjct: 69 PSKPLAIQHEESFRDFLLAP---CTSLTGSINPEERVRRWDESRVISATPQTIESDILTG 125
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDN 280
+ + LV DE HRA G+Y+Y M IL LTA+PG+ + I+ + N
Sbjct: 126 RYDLGDVSLLVFDECHRAVGSYSYVFLASSYMQTAKNPLILGLTASPGADEDKIKTVCSN 185
Query: 281 LYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLL 340
L+++ + + E D DV Y+ +IE + V+M E EI + + +V++ L +G++
Sbjct: 186 LFLNEVVVKTEKDPDVRPYLKPIRIEWVRVKMKPELEEIRDLLKKVLKTRLKMLKNLGVI 245
Query: 341 QNRDYQTLSPVDLLNSRDKF--RQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGI 398
+ ++ DLL +R + R A N P+ + + + A I + H LL + GI
Sbjct: 246 ET---VSVGKRDLLKARGRVQNRIARSSNPPKSCYRAI-SLIAASINVEHALELLETQGI 301
Query: 399 RPAYEMLEE-KLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKT 457
P ++ K K AR + + D + L +++ G + PKL +++E+L +
Sbjct: 302 HPLHKYFTRLKKKNTKAARSLIMDPDFTRAMYLTRKASVSGVEHPKLDRLIEILRKELEG 361
Query: 458 KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEK 517
D SR+I+F+ FR ++ +I G + A +F GQ+S KG +QK Q+ +++
Sbjct: 362 GD---SRIIVFTQFRDTLEEIYQRCVREG--INAVKFYGQNSRSGEKGLTQKQQRDIIKS 416
Query: 518 FRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558
FR G ++V+++TS+ EEG+DI VDLV+ ++ S +RMIQ
Sbjct: 417 FRMGNHDVLISTSVAEEGIDIPSVDLVVMYEPVPSEIRMIQ 457
>gi|385802402|ref|YP_005838802.1| ATP-dependent RNA helicase/nuclease Hef [Haloquadratum walsbyi C23]
gi|339727894|emb|CCC39004.1| ATP-dependent RNA helicase/nuclease Hef [Haloquadratum walsbyi C23]
Length = 855
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 148/481 (30%), Positives = 238/481 (49%), Gaps = 46/481 (9%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA ++TLV LPTGLGKT ++ +V G +F AP++PLV Q +
Sbjct: 23 RLYQIQLAGTARKTDTLVCLPTGLGKTTVSLLVTATRLNSIG-GTALFLAPTKPLVRQHV 81
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
E N + IP E + TG++SP RA+ W +V TPQV+E D+ + + L
Sbjct: 82 EFYRNALTIPDEDIVVFTGEVSPDDRAALWDDAQVVIATPQVIENDLIGNRISLNSVTHL 141
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG YAY R+ ++A+PGS ++ I + +N+ +S +E
Sbjct: 142 TFDECHRATGEYAYVYIAERYHDDATNPRVTGMSASPGSDKEGIVTVCNNIGVSAVEVMT 201
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV+ Y + +E +E+ E ++I + + +VIR +L ++G + + +S
Sbjct: 202 EDDADVAEYTYTTDVEWKHIELPDEIIQIRDALNDVIRDRLQQLKSLG-VADTTQPDVSQ 260
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG----IRPAYEMLE 406
L R K ++ I + Y G +S+H +R A E++E
Sbjct: 261 KQLNQMRGKLQKL-------IDADNSDGYAG-----------MSTHAEVMKLRRAVELVE 302
Query: 407 EKLKQGSFARFMSKNEDIR----------------KVKLLMQQSISHGAQSPKLSKMLEV 450
+ + S R+ + + KV+ MQ + S PK S+ +
Sbjct: 303 TQSVE-SVRRYFERQRNAAQSSGASKASQRLIAEPKVRQSMQLAESFDGTHPKFSRTRII 361
Query: 451 LVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKV 510
L + + RVIIF+ R + + L+ D+ + F+GQ+ S+G +Q+
Sbjct: 362 LAQTLGIEGGE--RVIIFTESRDTAEALTEFLSASFDVQR---FVGQNDTGRSEGMTQRE 416
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
QQ L FR+G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R IQR GRTGR+ +GR
Sbjct: 417 QQKALTAFRSGEFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRKGRTGRQTEGR 476
Query: 571 I 571
+
Sbjct: 477 V 477
>gi|269986940|gb|EEZ93216.1| type III restriction protein res subunit [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 508
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 152/477 (31%), Positives = 249/477 (52%), Gaps = 43/477 (9%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R+YQ I +TA NTLV LPTGLGKT+I+A++ +P K++F AP++PL Q
Sbjct: 11 REYQTKIFETAKTGNTLVVLPTGLGKTIISAMLANYRLEKYPSSKVLFLAPTKPLANQHY 70
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+++ + Q S + R ++ ++ F TPQ +E D++ L
Sbjct: 71 RTFSSLLSLKQGMASGSV---SSSSRGKIYEDAQIIFATPQTIENDMEKKVIDFSDFSLL 127
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
++DEAH A GNY+Y + +L LTA+P S ++ I+ I NL+I+ +E R+
Sbjct: 128 IVDEAHHAIGNYSYVKIAKLYSEQSFHPLLLGLTASPASDREKIKTICSNLHIANVEIRS 187
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
+ DQDV Y+ ++I I+V++ + +E++N I +I S L GLL+N ++
Sbjct: 188 DDDQDVIPYIQKKEINEIKVDLPPKLIELSNDIKLLISESISELQETGLLKNTQKSRINK 247
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYF--GALIT-----LYHIRRLLSSHGIRPAYE 403
V +L + ++ Q+ G+ Y G +IT LYH LLS+ +
Sbjct: 248 VTILLLQKSLQR-------QMLSGKRNYYLIRGIIITSKLLKLYHAYNLLSTQSLTAFLN 300
Query: 404 MLEEKLKQG---------SFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDH 454
L EK+++G S +RF+ E ++ L++Q I H PKL ++ + ++
Sbjct: 301 FL-EKIQKGKAKTDKELSSNSRFI---EITKRTSELVEQGIEH----PKLKQLESIFSNY 352
Query: 455 FKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAV 514
F + + IIF+ +R +V I N+++ + V+ +FIGQ G G SQK Q +
Sbjct: 353 FN----EEKKAIIFAQYRDTVDVICNSISNLPG-VRPIKFIGQGKG----GLSQKEQVNI 403
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
++ F +G YNV+V+TS+ EEG+ I VD+ I ++ S +R IQR GR GR G I
Sbjct: 404 IKDFESGVYNVLVSTSVSEEGMSIKGVDIAIFYETIPSAIRNIQRRGRVGRFSAGSI 460
>gi|110666996|ref|YP_656807.1| Hef nuclease [Haloquadratum walsbyi DSM 16790]
gi|109624743|emb|CAJ51150.1| ATP-dependent RNA helicase/nuclease Hef [Haloquadratum walsbyi DSM
16790]
Length = 851
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 148/481 (30%), Positives = 238/481 (49%), Gaps = 46/481 (9%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA ++TLV LPTGLGKT ++ +V G +F AP++PLV Q I
Sbjct: 23 RLYQIQLAGTARKTDTLVCLPTGLGKTTVSLLVTATRLNSIG-GTALFLAPTKPLVRQHI 81
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
E N + IP E + TG++SP RA+ W +V TPQV+E D+ + + L
Sbjct: 82 EFYRNALTIPDEDIVVFTGEVSPDDRAALWDDAQVVIATPQVIENDLIGNRISLNSVTHL 141
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG YAY R+ ++A+PGS ++ I + +N+ +S +E
Sbjct: 142 TFDECHRATGEYAYVYIAERYHDDATNPRVTGMSASPGSDKEGIVTVCNNIGVSAVEVMT 201
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV+ Y + +E +E+ E ++I + + +VIR +L ++G + + +S
Sbjct: 202 EDDADVAEYTYTTDVEWKHIELPDEIIQIRDALNDVIRDRLQQLKSLG-VADTTQPDVSQ 260
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG----IRPAYEMLE 406
L R K ++ I + Y G +S+H +R A E++E
Sbjct: 261 KQLNQMRGKLQKL-------IDADNSDGYAG-----------MSTHAEVMKLRRAVELVE 302
Query: 407 EKLKQGSFARFMSKNEDIR----------------KVKLLMQQSISHGAQSPKLSKMLEV 450
+ + S R+ + + KV+ MQ + S PK S+ +
Sbjct: 303 TQSVE-SVRRYFERQRNAAQSSGASKASQRLIAEPKVRQSMQLAESFDGTHPKFSRTRIL 361
Query: 451 LVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKV 510
L + + RVIIF+ R + + L+ D+ + F+GQ+ S+G +Q+
Sbjct: 362 LAQTLGIEGGE--RVIIFTESRDTAEALTEFLSASFDVQR---FVGQNDTGRSEGMTQRE 416
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
QQ L FR+G + V+++TS+ EEGLD+ EVDLV+ F+ + +R IQR GRTGR+ +GR
Sbjct: 417 QQKALTAFRSGEFEVLISTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRKGRTGRQTEGR 476
Query: 571 I 571
+
Sbjct: 477 V 477
>gi|148643247|ref|YP_001273760.1| Hef nuclease [Methanobrevibacter smithii ATCC 35061]
gi|222445478|ref|ZP_03607993.1| hypothetical protein METSMIALI_01117 [Methanobrevibacter smithii
DSM 2375]
gi|261349960|ref|ZP_05975377.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM
2374]
gi|148552264|gb|ABQ87392.1| ERCC4-like helicase [Methanobrevibacter smithii ATCC 35061]
gi|222435043|gb|EEE42208.1| helicase C-terminal domain protein [Methanobrevibacter smithii DSM
2375]
gi|288860743|gb|EFC93041.1| putative ATP-dependent RNA helicase [Methanobrevibacter smithii DSM
2374]
Length = 772
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 140/482 (29%), Positives = 254/482 (52%), Gaps = 27/482 (5%)
Query: 108 VPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLV 166
+ R YQ + L NT++ PT LGKT++A +V + + KI+ APS+PL
Sbjct: 15 IEARLYQQVLAADVLKKGNTMIVAPTALGKTIVATLVAADRLEKVKNSKILVLAPSKPLA 74
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKY 226
+Q + +P +TG + +R W+ ++ TPQ +E D+ G +K
Sbjct: 75 IQHESTFKEFLTVP---CSSITGAVKTDERVKRWEESQIICATPQTVESDLLKGRYSLKD 131
Query: 227 LVCLVIDEAHRATGNYAYC-TAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYIST 285
+ +V DE H G+Y+Y A R + L IL LTA+PGS ++ I+ + DNLYI +
Sbjct: 132 VSLVVFDECHHGVGSYSYVYLASRYVKESKFNL-ILGLTASPGSDKEKIKEVCDNLYIQS 190
Query: 286 LEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDY 345
+ + E D DV Y + I+ + V+M E +I + + ++ L +G+++
Sbjct: 191 IVVKTEEDNDVRPYFNPVAIDWVRVKMSSELEKIKTHVDKALKIRLKGLKNMGVIRT--- 247
Query: 346 QTLSPVDLLNSRDKFRQAPPPNL-PQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEM 404
+++ +D+L +R + + A ++ P+ + + + A+I + H + L+ + G+ +
Sbjct: 248 VSVNKLDILKARGRVQSAIARSVNPKKECFQAISILSAVINIQHSQELIETQGVVTFNKY 307
Query: 405 LEE-KLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVD---------- 453
+ + K+ A+ + ++ + K L +++ HG + PKL K+ +++
Sbjct: 308 VARLRKKKTKAAKSLIQDPNFGKAIYLAREAEKHGLEHPKLKKVTDIIKKELGQNGQTKL 367
Query: 454 ----HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQK 509
+ K D K S++++F+ +R S+ I L G +K+ +F GQ+S KG +QK
Sbjct: 368 QSDRYVKDADQKSSKIMVFTQYRDSLEMIHQKLEKEG--IKSAKFFGQASRDGEKGLTQK 425
Query: 510 VQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDG 569
Q+ +++ F+ G Y+V+++TS+ EEG+DI VDLVI ++ S +RMIQR GRTGRK G
Sbjct: 426 EQKEIIKAFKIGEYDVLLSTSVAEEGIDIPAVDLVILYEPVPSEVRMIQRRGRTGRKRSG 485
Query: 570 RI 571
R+
Sbjct: 486 RV 487
>gi|298675601|ref|YP_003727351.1| ERCC4 domain-containing protein [Methanohalobium evestigatum
Z-7303]
gi|298288589|gb|ADI74555.1| ERCC4 domain protein [Methanohalobium evestigatum Z-7303]
Length = 759
Score = 224 bits (571), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 161/506 (31%), Positives = 260/506 (51%), Gaps = 32/506 (6%)
Query: 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167
V R YQ + T+L +++LV LPTGLGKT +A +VI + F G+ + +P++PLV
Sbjct: 15 VEQRLYQLNLAGTSLNTSSLVVLPTGLGKTTVALLVIASRLEKF-GGRALVLSPTKPLVE 73
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYL 227
Q + + IP+ TG SP KRA W+ V TPQV+E D+ + + +
Sbjct: 74 QHAHFLKSTLAIPENNIQAFTGNTSPEKRAELWENSSVIVSTPQVIENDLLAKRIDLNDV 133
Query: 228 VCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLE 287
+ DEAHRA GNY+Y + L +TA+PGS + I + + L I ++
Sbjct: 134 SHITFDEAHRAVGNYSYTYIAEKYYENGKNPLCLGITASPGSDDEKINEVCECLQIQSVA 193
Query: 288 YRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQT 347
+ E+D DVS Y+ ++I+ V++ E ++ + +++ ++LS G + +
Sbjct: 194 VKTETDSDVSPYIQKKQIDWKYVKLPDEIKKLKQLLEKILDDRFAKLSDTGYTVPKK-KK 252
Query: 348 LSPVDLLNSRDKF----RQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPA-- 401
+ DLL+ + + R P PN+ + ++ + H +L + G+
Sbjct: 253 ATKKDLLSLQSRLHAQLRNDPDPNIYN-----ALSLLAEILKVNHALEVLETQGVDALTK 307
Query: 402 -YEML--EEKLKQGSFARFMSKNEDIRKVKLLMQQSISH-----GAQSPKLSKMLEVLVD 453
Y+ L E LK GS A SK R + Q ISH ++ PKL E++
Sbjct: 308 YYDRLDREAGLKSGSKA---SK----RLAEDPYMQQISHRLKECSSEHPKLEMTREIVSK 360
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
+ ++P SR I+F+N+R + + N L+ + D V F+GQSS KG +QK Q
Sbjct: 361 QLE-ENP-DSRAIVFTNYRDTAEMLANLLSEM-DGVYPIRFVGQSSKYNDKGLTQKQQVE 417
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH 573
+++KF+ G YNVIV+TS+ EEGLDI DLV+ ++ S +R IQR GRT RK +GR+
Sbjct: 418 IIDKFKTGEYNVIVSTSVAEEGLDIPSTDLVLFYEPVPSEIRSIQRKGRTARKQEGRVVV 477
Query: 574 IFKPEVQFVELSIEQYVSRGKKVKDD 599
+ E + E VS+ +K++D+
Sbjct: 478 LVTKETRD-EAYYWSSVSKERKMQDN 502
>gi|159482689|ref|XP_001699400.1| predicted protein [Chlamydomonas reinhardtii]
gi|158272851|gb|EDO98646.1| predicted protein [Chlamydomonas reinhardtii]
Length = 231
Score = 224 bits (571), Expect = 3e-55, Method: Composition-based stats.
Identities = 106/224 (47%), Positives = 148/224 (66%), Gaps = 10/224 (4%)
Query: 100 KTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159
+TW+YP + VR+YQF + + ALF+NTLV LPTGLGKTLIAAVVI NF+RWFPDGK+VF
Sbjct: 7 RTWLYPTDQEVREYQFRMVRGALFANTLVCLPTGLGKTLIAAVVILNFYRWFPDGKLVFT 66
Query: 160 APSRPLVMQQIEACHNIVGIPQ-EWTI---------DMTGQISPTKRASFWKTKRVFFVT 209
AP++PLV QQ AC IP+ E T+ D G + R W ++RVFF T
Sbjct: 67 APTKPLVEQQHRACLEKTHIPKGETTVLTAGRAKRGDEAGSAAAESRRELWSSRRVFFCT 126
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQ+L+ DI +G C LV +V+DE HR TGN A A+ EL + +R++ L+ATPG
Sbjct: 127 PQILDNDIANGVCPRDKLVLIVVDECHRVTGNAAPVAALTELRRTGLAVRVVGLSATPGK 186
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMG 313
+ +Q ++ +L +S +E+R++ D DVS +VHN+++ L E+G
Sbjct: 187 NAEAVQEVVRHLGVSRVEFRSDEDPDVSPHVHNKQVRLGGWEVG 230
>gi|333988597|ref|YP_004521204.1| helicase domain-containing protein [Methanobacterium sp. SWAN-1]
gi|333826741|gb|AEG19403.1| helicase domain-containing protein [Methanobacterium sp. SWAN-1]
Length = 772
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 143/473 (30%), Positives = 256/473 (54%), Gaps = 16/473 (3%)
Query: 103 IYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P + R YQ + L N+++ PT LGKT++AA+V + FPD K++ AP
Sbjct: 10 IKPGKIESRLYQQILAAGVLKKGNSMIVAPTALGKTIVAALVAAERLKKFPDSKVLVLAP 69
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
S+PLV+Q E+ + + T +TG I+P+KR W ++ TPQ +E D+ SG
Sbjct: 70 SKPLVIQHEESFREFLKVS---TTSLTGAITPSKRVKRWFDSQIICATPQTVEADVISGR 126
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
++ + LV DE HR G Y+Y + + IL LTA+PG + I + +NL
Sbjct: 127 YSIEDVSLLVFDECHRGVGAYSYVYLASKYTTDGKNPLILGLTASPGWDDEKIGSVCENL 186
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
+I + ++E D DV Y + ++ ++VE+ E +I + + + ++ L +G+++
Sbjct: 187 FIKDVVIKSEEDADVVPYFNPVDVKWVKVELKPELKDIKSHMDKALKARLKTLKRMGIIR 246
Query: 342 NRDYQTLSPVDLLNSRD--KFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIR 399
+ ++S D+L ++ + R N P+ F + + A++ L H LL + GI
Sbjct: 247 S---VSVSKKDVLAAKASAQRRIGSSANPPKKCFLAI-SILAAVLNLLHSLELLETQGIS 302
Query: 400 PAYEMLEE-KLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTK 458
+ + K+ ++ + + + L +++ +G + PKL K++++L + K
Sbjct: 303 NLHSYFGRLRKKRTKASKGLMNDPEFHTAMELTEKAYENGIEHPKLEKLIKILKNELKNP 362
Query: 459 DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518
+ SR+I+F+ FR +V + + + + A +F GQ+S KG +QK Q+ +++ F
Sbjct: 363 E---SRIIVFTQFRDTVNKAYDK--CMENNINAVKFFGQASRDTEKGLTQKKQKEIIKNF 417
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ G Y+V+++TS+ EEG+DI VDLV+ ++ S +RMIQR GRTGRK+ GR+
Sbjct: 418 KKGVYDVLISTSVAEEGIDIPSVDLVVLYEPVPSEIRMIQRRGRTGRKNKGRM 470
>gi|413925498|gb|AFW65430.1| hypothetical protein ZEAMMB73_814845, partial [Zea mays]
Length = 803
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 162/474 (34%), Positives = 241/474 (50%), Gaps = 82/474 (17%)
Query: 495 IGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
+G G KGQSQK QQA+L+KFR+G YNV+VATSIGEEGLDI+EVDLVICFDANVSPL
Sbjct: 86 LGVHLGNQLKGQSQKTQQAILKKFRSGVYNVLVATSIGEEGLDIIEVDLVICFDANVSPL 145
Query: 555 RMIQRMGRTGRKHDGR------------------------------------------IP 572
RMIQRMGRTGRK++GR +P
Sbjct: 146 RMIQRMGRTGRKNEGRVVVLAYEGQELQGYRKKQGDCRTMRKLLHNSERFEYHASPRMVP 205
Query: 573 HIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPTSDSTWR 632
H++KPEV++V+L+I++Y+ KK++ +PI K++ A+ +I +YF + WR
Sbjct: 206 HVYKPEVKYVKLTIDKYIPHAKKMRVAAKEASPI-PWKMSEADGQMITRYFSVCKEEVWR 264
Query: 633 PSLIAFPHFQALPSRVHKVMHSFR-TGMLIDMMQHLQGLTFSRDDRTFVEDEVSSDKHLG 691
PSL+AFP FQ PS VHKV HSFR T ML D M+ LQ + R + E+ +
Sbjct: 265 PSLVAFPRFQLYPSVVHKVPHSFRTTDMLTDAMKQLQDPSLFR-----TKCEIPLQEPAN 319
Query: 692 LQTVEPCETDERDNFHGTK------KVTDSELSTRTLGTQENHSMPQSCCKSPAAHAYLF 745
+ VE E E + + + D ++ ++ EN S+P S K H + F
Sbjct: 320 VSAVE--EGLEHEGLYAANGNEEMPQECDGLEASSSVVWNENVSVPGSPVKKYPVHTF-F 376
Query: 746 GSDFISVDALGKVLIISVPALPFKELSHSKKKRAPDTLLLNHWKQDSSPLKTSD---KNY 802
D+++VD G VLI VP LP ++++ SK ++ + N + + P +++ +
Sbjct: 377 SGDYVTVDRRGSVLITYVPVLP-QKIAFSKDIKS--AVWNNKDQNKAKPYRSAAGVCRTT 433
Query: 803 DELTVQSKAVEELTTSQAACIKDGALPISRFCRSDALPEKPLDGFEEILDSPVLRRNQLR 862
E + + + L + + + PE G + + D+ VL +
Sbjct: 434 VEFVLGTNTDKHLFVDNLSTVAMHS------------PECSWHG-DNVDDNHVLTTVPSK 480
Query: 863 EEDTTDETLDV-NEIKEPLSPDDEYHNDLRDSELSPRLTNLIKSGVVPESPINE 915
+ E +D +K P S ++ D EL+ RLT ++ G+VPESP+ E
Sbjct: 481 TLTSPREKMDTPCNVKLPEST----YSYQEDMELNSRLTVYMEEGIVPESPVVE 530
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 1094 VSSEAEVSDDEEDDEDNNSYDDSFIDDRMNPT--ATSTQAESSGVDMMAIYRFLLLS 1148
VS +A VS+DE+D++ + Y+DSFIDD+ PT + Q + DMM YR+L +S
Sbjct: 594 VSEDAYVSEDEDDNQSEDKYEDSFIDDQATPTEFTQTEQGDRHNGDMMGFYRYLDVS 650
>gi|300709530|ref|YP_003735344.1| Hef nuclease [Halalkalicoccus jeotgali B3]
gi|448297701|ref|ZP_21487744.1| Hef nuclease [Halalkalicoccus jeotgali B3]
gi|299123213|gb|ADJ13552.1| Hef nuclease [Halalkalicoccus jeotgali B3]
gi|445578571|gb|ELY32974.1| Hef nuclease [Halalkalicoccus jeotgali B3]
Length = 799
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 151/482 (31%), Positives = 249/482 (51%), Gaps = 33/482 (6%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + A ++TLV LPTGLGKT ++ +V GK +F AP+
Sbjct: 16 LTPGFIERRLYQIQLAGRAKTAHTLVCLPTGLGKTTVSLLVTAERLNDVG-GKSLFLAPT 74
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q E + IP E + TG++ P RA+ W ++ TPQV+E D+ G
Sbjct: 75 KPLVEQHAEFYREALEIPDEEIVVFTGEVRPDDRAALWDDSKIVIATPQVVENDLVGGRI 134
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
+ + L DE HRATG+Y+Y + ++A+PG ++ I + +NL
Sbjct: 135 SLADVTHLTFDECHRATGDYSYVYIAERYHGDAENPLVTGMSASPGGDEEAILEVCENLG 194
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
IS +E E D DV+ Y H+ ++E +E+ +E +EI + + EV++ +L IG++ +
Sbjct: 195 ISEVEVMTEEDSDVAEYTHDTEVEWKRIEVPEEIIEIRDALNEVVKDRLEKLKEIGVIGS 254
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA-----LITLYHIRRLLSSHG 397
+S +L R + ++ I+ + E Y G ++ L H ++ S G
Sbjct: 255 ARVD-ISRKELFGVRSELQKL-------IQNDQSEGYTGMSIHAEVMKLKHAVEVVESQG 306
Query: 398 IRPAYEMLEEKLKQGSFARFMSKNEDIR----KVKLLMQQSISHGAQSPKLSKM----LE 449
+ A E E+L+ + + SK KV+ M+++ + PKLS+ +E
Sbjct: 307 VE-ALEAYFERLRNEARSSGASKASQRLVSEPKVREAMRRADEYDDLHPKLSETRRLAIE 365
Query: 450 VLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQK 509
LVD + RVI+F+ +R + + L G+ V F+GQ + S G +QK
Sbjct: 366 TLVDGGR-------RVIVFTEYRDTAETLTEFL---GEHVDTRRFVGQGDKEGSSGMTQK 415
Query: 510 VQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDG 569
Q+ VL+ FR G + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +G
Sbjct: 416 EQKEVLDDFRKGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRAIQRKGRTGRQDEG 475
Query: 570 RI 571
++
Sbjct: 476 QV 477
>gi|222480951|ref|YP_002567188.1| Hef nuclease [Halorubrum lacusprofundi ATCC 49239]
gi|222453853|gb|ACM58118.1| ERCC4 domain protein [Halorubrum lacusprofundi ATCC 49239]
Length = 836
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 140/462 (30%), Positives = 229/462 (49%), Gaps = 8/462 (1%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + A +TLV LPTGLGKT ++ +V GK +F AP++PLV Q
Sbjct: 21 RRYQLQLADAAADEHTLVCLPTGLGKTTVSLLVTAERLHEVG-GKALFLAPTKPLVQQHA 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP + + TG + P RA+ W R+ TPQV+E D+ ++ +
Sbjct: 80 DFYREALSIPDDEIVVFTGDVKPDDRAALWNDARIVIATPQVVENDLVGNRISLRDVTHC 139
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG + I+ + +NL +S +E
Sbjct: 140 TFDECHRATGDYAYVYIAERYHADAADPLVTGMSASPGGDTEEIETVCENLGLSNVEVMT 199
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV Y H+ ++ +V + E + I + + EVI +L ++G+ N+ LS
Sbjct: 200 EEDADVDEYTHDTDVQWEQVTLPDEVIAIRDALNEVITDRLEKLKSLGV-TNKTSPDLSQ 258
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFG-EVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
DL R K ++ + G A L + S +R +E E
Sbjct: 259 RDLNEMRGKLKKMMDNDQSDGYKGMSTHAEVMKLRRATELVETQSVESVRRYFERQREAA 318
Query: 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469
+ ++ + KV+ M+++ + PK SK +L + + + R I+F+
Sbjct: 319 RSSGASKASQRMVADPKVREAMRKAEAFDGLHPKFSKARILLAETLGINEGE--RAILFT 376
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
R + ++ L+T D+ K F+GQ + S G SQK QQ L++F+AG + V+V+T
Sbjct: 377 ESRDTAEALVEFLSTSFDVRK---FVGQGDKEGSDGMSQKQQQETLDEFKAGDFEVLVST 433
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
S+ EEGLD+ EVDLV ++ + +R IQR GRTGR+ +G++
Sbjct: 434 SVAEEGLDVPEVDLVCFYEPVPTAIRSIQRKGRTGRQAEGKV 475
>gi|448475812|ref|ZP_21603167.1| Hef nuclease [Halorubrum aidingense JCM 13560]
gi|445816030|gb|EMA65939.1| Hef nuclease [Halorubrum aidingense JCM 13560]
Length = 825
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 143/469 (30%), Positives = 233/469 (49%), Gaps = 22/469 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + A +TLV LPTGLGKT ++ +V GK +F AP++PLV Q
Sbjct: 21 RRYQLQLADAAADDHTLVCLPTGLGKTTVSLLVTAERLHE-AGGKALFLAPTKPLVQQHA 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP + + TG + P RA+ W R+ TPQV+E D+ ++ + L
Sbjct: 80 DFYREALSIPADEIVVFTGDVKPDDRAAVWDDARIVIATPQVVENDLVGNRISLRDVTHL 139
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG + IQ + +NL + +E
Sbjct: 140 TFDECHRATGDYAYVYIAERYHADAADPLVTGMSASPGGDTEEIQTVCENLGLRNVEVMT 199
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E+D DV Y H+ + +V + E + I + + EVI +L ++G+ N+ LS
Sbjct: 200 EADADVDEYTHDTDVRWEQVTLPDEVIVIRDALNEVITDRLEKLKSLGV-TNKTSPDLSQ 258
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA-----LITLYHIRRLL---SSHGIRPAY 402
DL R K ++ + + + Y G ++ L L+ S +R +
Sbjct: 259 RDLNEMRGKLKK-------MMDNDQSDGYKGMSTHAEVMKLRRATELVETQSVESVRRYF 311
Query: 403 EMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462
E E + ++ + KV+ M+++ S PK SK +L + D +
Sbjct: 312 ERQREAARSSGASKASQRMVADPKVREAMRKAESFDGLHPKFSKARILLAETLGINDGE- 370
Query: 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG 522
R I+F+ R + ++ L+T + K F+GQ + S G SQK QQ L++F+AG
Sbjct: 371 -RAILFTESRDTAEALVEFLSTSFAVRK---FVGQGDKEGSDGMSQKQQQETLDEFKAGA 426
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ V+V+TS+ EEGLD+ EVDLV ++ + +R IQR GRTGR+ +G++
Sbjct: 427 FEVLVSTSVAEEGLDVPEVDLVCFYEPVPTAIRSIQRKGRTGRQAEGQV 475
>gi|403216112|emb|CCK70610.1| hypothetical protein KNAG_0E03530 [Kazachstania naganishii CBS
8797]
Length = 979
Score = 222 bits (566), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 141/430 (32%), Positives = 220/430 (51%), Gaps = 27/430 (6%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H E ++YP N+ R YQ+ I + +L N L A+PTG+GKT IA+ V+ NFFRW
Sbjct: 67 HHSFRTEELDYYVYPTNLQKRTYQYDIVRESLLQNVLCAIPTGMGKTFIASTVMLNFFRW 126
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
KI+F AP+RPLV QQI+AC I IP + T + + S R + WK KRVFF TP
Sbjct: 127 TKTAKIIFMAPTRPLVAQQIQACLGITDIPNDETAILLDK-SRKNRETIWKEKRVFFATP 185
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
QV+E D++ G K ++C+VIDEAHR G+YAY ++ + R+LALTATPG+
Sbjct: 186 QVVENDLKRGVLDPKEIICIVIDEAHRGIGSYAYANVVQFIDRFNTSYRVLALTATPGAT 245
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+ +Q ++D L IS +E R E DV Y+ + E I V + E +I ++ I P
Sbjct: 246 LENVQEVVDKLNISKIELRTEESADVLRYMKEKHKEKITVGLSMEIEDIIEQLGIAIMPV 305
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQ-APPPNLPQ-IKFGEVEAYFGALITLYH 388
L L+ D+ S ++ + K ++ P++P+ IK+ + F L L H
Sbjct: 306 ---LKQAIELEIYDHCAPSQINAFVAMQKSQKIITNPSIPEGIKWRD----FFILQLLNH 358
Query: 389 IRRLLSS---HGIRPAYEMLEEKLKQGSFARFMSKNED-------IRKVKLLMQQSISHG 438
+ ++L +GIR Y + K + + + K+ + + +++
Sbjct: 359 MGQMLKRIKIYGIRTFYSYFKNKYNEFTTKYNLGKSTNKIAASFYYHPILRTLRKQCDAY 418
Query: 439 AQSP------KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD-LVKA 491
+ P KL + + L + F + SRVIIF+ R S +I+ + + D ++
Sbjct: 419 LEDPKFLGHDKLQHIRDELAEFFSEGNATMSRVIIFTELRESALEIVKCVDAMDDHHIRP 478
Query: 492 TEFIGQSSGK 501
FIGQ+ K
Sbjct: 479 HIFIGQARAK 488
Score = 99.8 bits (247), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
G S G +QK Q+ ++ +F+ G YNV++ TSIGEEGLDI EVDL+IC+D SP++
Sbjct: 541 GSSEDAQINGMTQKQQKDIIHRFKQGEYNVLICTSIGEEGLDIGEVDLIICYDTTSSPIK 600
Query: 556 MIQRMGRTGRKHDGRIPHIFKP-EVQFVELSIEQY 589
IQRMGRTGRK GRI +F E + E ++E Y
Sbjct: 601 NIQRMGRTGRKRHGRIMLLFSSNEERKFEKAMEDY 635
>gi|289192001|ref|YP_003457942.1| helicase domain protein [Methanocaldococcus sp. FS406-22]
gi|288938451|gb|ADC69206.1| helicase domain protein [Methanocaldococcus sp. FS406-22]
Length = 783
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 244/463 (52%), Gaps = 23/463 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ I AL TL L TGLGKT IA +VI DGKI+ APSRPLV Q
Sbjct: 16 RLYQQIIAANALKKKTLCVLSTGLGKTAIAILVIAGILTK-KDGKILILAPSRPLVEQHY 74
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
++ I ++ I +TG+I P KR +K ++F TPQV+E DI +G + V L
Sbjct: 75 NRLKEVLNIDEDKIIALTGKIQPKKRVELYKKGKIFIATPQVIENDIIAGRINIDEFVLL 134
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
+ DEAH TG++AY ++ + +L LTA+PGS + I +NL I +E R
Sbjct: 135 IADEAHHTTGDHAYAFVAKKFKD---KCHVLGLTASPGSDIDRVMEICENLGIEHVEVRT 191
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D+DV Y+ K+ I +++ E I E ++ L G++ + T +
Sbjct: 192 EDDEDVKPYIAKVKLTPIRIDLPDEFKRALKLINEALKERLKILKDAGVIDSISNTTKTE 251
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEE-KL 409
+ LN++ F ++K+ + AL L H + LL S G + + +
Sbjct: 252 LIELNNK-LFSYD-----EEVKYELIRVCSEAL-KLMHAKELLESQGKSVFLNYINKLSM 304
Query: 410 KQGSFARFMSKNEDIRK-VKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIF 468
++ A+ + +E +R+ V LLM+ ++ H PKL K+++++ + + + R+IIF
Sbjct: 305 QRTKSAKSIVNDEKVREAVNLLMKSNVEH----PKLDKVVDIVKGILQKNEDE--RIIIF 358
Query: 469 SNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVA 528
+ +R +V I+N L G +KA FIGQ++ K KG SQK Q +EKF+ G +V+V+
Sbjct: 359 AQYRDTVEKIVNLLTQNG--IKAIRFIGQAN-KEGKGMSQKEQIEAIEKFKKEG-SVLVS 414
Query: 529 TSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
TS+ EEG+DI V+ +I ++ S +R IQR GR R G++
Sbjct: 415 TSVSEEGIDIPTVNYIIFYEPVPSEIRFIQRRGRAMRGEGGKV 457
>gi|448605289|ref|ZP_21657964.1| Hef nuclease [Haloferax sulfurifontis ATCC BAA-897]
gi|445742813|gb|ELZ94306.1| Hef nuclease [Haloferax sulfurifontis ATCC BAA-897]
Length = 854
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 143/491 (29%), Positives = 238/491 (48%), Gaps = 50/491 (10%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + TA +TLV LPTGLGKT ++ +V + GK +F AP+
Sbjct: 15 LAPSFIERRLYQIRLAGTARNGHTLVCLPTGLGKTTVSLLVTAQRL-YDVGGKSLFLAPT 73
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + + +P + + TG + P RA+ W+ ++ TPQV+E D+
Sbjct: 74 KPLVQQHADFYREALTVPDDEIVVFTGDVRPDDRAALWQDAQIVIATPQVIENDLIGNRI 133
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + L DE HRA+G+YAY + + ++A+PG ++ I + +NL
Sbjct: 134 SLRDVTHLTFDECHRASGDYAYVYIAERYHADAENPLVTGMSASPGGDEEAILEVCENLG 193
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I +E E D DVS Y H+ +E +++ E +EI + + EVI +L +G+ +
Sbjct: 194 IVDVEVMTEEDADVSEYTHDTDVEWNRIQLPDEILEIRDALNEVITDRLEKLKQLGVTK- 252
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR--RLLSSHG--- 397
+ P++ Q K + A L+ + +S+H
Sbjct: 253 --------------------STKPDISQKKLNRMRAELQRLMNADKSEGYKGMSTHAEVM 292
Query: 398 -IRPAYEMLEEKLKQGSFARFMSKNEDIR----------------KVKLLMQQSISHGAQ 440
+R A E++E + + S R+ + + KV+ MQ++ S
Sbjct: 293 KLRRAVELVETQSVE-SVRRYFERQRNAARSSGASKASQRLVAEPKVREAMQKAESFDGL 351
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG 500
PK K +L + +D + RVI+F+ R + + L+ + F+GQ
Sbjct: 352 HPKFRKTRILLAETLGIQDGE--RVIVFTESRDTAEALTEFLS---ESFSVRRFVGQGDR 406
Query: 501 KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+ S G +Q QQ L+KFR+G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R IQR
Sbjct: 407 EGSDGMTQNEQQETLDKFRSGEFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRK 466
Query: 561 GRTGRKHDGRI 571
GRTGR+ DGR+
Sbjct: 467 GRTGRQADGRV 477
>gi|448460272|ref|ZP_21597097.1| Hef nuclease [Halorubrum lipolyticum DSM 21995]
gi|445807013|gb|EMA57099.1| Hef nuclease [Halorubrum lipolyticum DSM 21995]
Length = 827
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 230/462 (49%), Gaps = 8/462 (1%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + A +TLV LPTGLGKT ++ +V GK +F AP++PLV Q
Sbjct: 21 RRYQLQLADAAADEHTLVCLPTGLGKTTVSLLVTAERLHE-AGGKALFLAPTKPLVQQHA 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + +P + + TG + P RA+ W+ R+ TPQV+E D+ ++ +
Sbjct: 80 DFYREALSVPDDEIVVFTGDVKPDDRAALWEDARIVIATPQVVENDLVGNRISLRDVTHC 139
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG + I+ + +NL +S +E
Sbjct: 140 TFDECHRATGDYAYVYIAERYHADAADPLVTGMSASPGGDTEEIETVCENLGLSNVEVMT 199
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E+D DV Y H+ ++ +V + E + I + + EVI +L ++G+ N+ LS
Sbjct: 200 EADADVDEYTHDTDVQWEQVTLPDEVLAIRDALNEVITDRLEKLKSLGV-TNKTSPDLSQ 258
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFG-EVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
DL R K ++ + G A L + S +R +E E
Sbjct: 259 RDLNEMRGKLKKMMDNDQSDGYKGMSTHAEVMKLRRATELVETQSVESVRRYFERQREAA 318
Query: 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469
+ ++ + KV+ M+++ S PK SK +L + + + R I+F+
Sbjct: 319 RSSGASKASQRMVADPKVREAMRKAESFDGLHPKFSKARILLAETLGINEGE--RAILFT 376
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
R + ++ L+ D+ K F+GQ + S G SQK QQ L++F+AG + V+V+T
Sbjct: 377 ESRDTAEALVEFLSASFDVRK---FVGQGDKEGSDGMSQKQQQETLDEFKAGEFEVLVST 433
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
S+ EEGLD+ EVDLV ++ + +R IQR GRTGR+ +G++
Sbjct: 434 SVAEEGLDVPEVDLVCFYEPVPTAIRSIQRKGRTGRQAEGKV 475
>gi|389848441|ref|YP_006350680.1| Hef nuclease [Haloferax mediterranei ATCC 33500]
gi|448616895|ref|ZP_21665605.1| Hef nuclease [Haloferax mediterranei ATCC 33500]
gi|388245747|gb|AFK20693.1| Hef nuclease [Haloferax mediterranei ATCC 33500]
gi|445751550|gb|EMA02987.1| Hef nuclease [Haloferax mediterranei ATCC 33500]
Length = 870
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 145/489 (29%), Positives = 238/489 (48%), Gaps = 46/489 (9%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + A +TLV LPTGLGKT ++ +V GK +F AP+
Sbjct: 15 LVPSFIERRLYQIRLAGAARDDHTLVCLPTGLGKTTVSLLVTAERLHEIG-GKSLFLAPT 73
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + + IP + + TG + P RA+ W ++ TPQV+E D+
Sbjct: 74 KPLVQQHADFYREALNIPDDEIVVFTGDVRPDDRAALWDDAQIIIATPQVIENDLIGNRI 133
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + L DE HRA+G+YAY + + ++A+PG ++ I + +NL
Sbjct: 134 SLRDVTHLTFDECHRASGDYAYVYIAERYHADAADPLVTGMSASPGGDEEAILEVCENLG 193
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I+ +E E D DV+ Y H+ +E +++ E +EI + + EVI+ +L +G+ +
Sbjct: 194 IADVEVMTEEDADVAEYTHDTDVEWNRIQLPDEILEIRDALNEVIKDRLEKLKHLGVASS 253
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG----I 398
+S DL R + ++ + + E Y G +S+H +
Sbjct: 254 T-KPDVSQKDLNRMRAELQRLMNAD-------KSEGYKG-----------MSTHAEVMKL 294
Query: 399 RPAYEMLEEKLKQGSFARFMSKNEDIR----------------KVKLLMQQSISHGAQSP 442
R A E++E + + S R+ + + KV+ M+++ S P
Sbjct: 295 RRAVELVETQSVE-SVRRYFERQRNAARSSGASKASQRLVAEPKVREAMRKAESFDGLHP 353
Query: 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKA 502
K K +L + D + RVI+F+ R + + L+ + F+GQ +
Sbjct: 354 KFRKTRILLAETLGIHDGE--RVIVFTESRDTAEALTEFLS---ESFSVRRFVGQGDREG 408
Query: 503 SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
S G SQK QQ L+KFR G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R IQR GR
Sbjct: 409 SDGMSQKEQQETLDKFRGGEFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRKGR 468
Query: 563 TGRKHDGRI 571
TGR+ DGR+
Sbjct: 469 TGRQADGRV 477
>gi|448655325|ref|ZP_21682177.1| Hef nuclease [Haloarcula californiae ATCC 33799]
gi|445765774|gb|EMA16912.1| Hef nuclease [Haloarcula californiae ATCC 33799]
Length = 851
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 141/478 (29%), Positives = 244/478 (51%), Gaps = 24/478 (5%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + +TA +TLV LPTGLGKT ++ +V GK + AP+
Sbjct: 16 VTPEFLENRRYQTELAETASGDHTLVCLPTGLGKTTVSLLVTAERLNAVG-GKSLMLAPT 74
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q E + + E + TG++ P RA+ W R+ TPQV+E D+
Sbjct: 75 KPLVQQHAEFYREALELDDEDVVVFTGEVRPDDRAALWDDARIVIATPQVVENDLVGNRI 134
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
+ + DE HRATG+YAY + + ++A+PG ++ I + +NL
Sbjct: 135 SLADVTHCTFDECHRATGDYAYNYIADRYHADAENPLVTGMSASPGDDEEAILEVCENLG 194
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
+S + E+D DV+ Y H+ ++ +E+ + VEI + I EVI+ S+L +G+ N
Sbjct: 195 LSDVAVMTENDADVAEYTHDTSVDWKRIELPEVVVEIRDAINEVIKDRLSQLKELGVT-N 253
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS------- 395
+ +S ++ + + R + + E Y G + L IR+L ++
Sbjct: 254 KSSADISEREIQQIQGQLRDL-------MNNDQSEGYQG-MSLLAEIRKLRTAVTYVETQ 305
Query: 396 --HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVD 453
+R +E L+E + ++ + KV+ M+++ S+ PK + +L +
Sbjct: 306 SVESLRRYFERLKEAARSSGASKADQRLVSEPKVREAMRKAESYNDLHPKFRQTRMLLAE 365
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
++ + RVI+F+ R + +++ L+ D +F+GQS S+G +Q QQ
Sbjct: 366 TLGIENGE--RVIVFTESRDTAETLVDFLS---DHFTTQKFVGQSDTDGSEGMTQTQQQE 420
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
L++FR G + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 421 TLDRFRNGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRAIQRKGRTGRQAEGRV 478
>gi|448638549|ref|ZP_21676399.1| Hef nuclease [Haloarcula sinaiiensis ATCC 33800]
gi|445763328|gb|EMA14527.1| Hef nuclease [Haloarcula sinaiiensis ATCC 33800]
Length = 836
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 141/478 (29%), Positives = 244/478 (51%), Gaps = 24/478 (5%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + +TA +TLV LPTGLGKT ++ +V GK + AP+
Sbjct: 16 VTPEFLENRRYQTELAETASGDHTLVCLPTGLGKTTVSLLVTAERLDAVG-GKSLMLAPT 74
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q E + + E + TG++ P RA+ W R+ TPQV+E D+
Sbjct: 75 KPLVQQHAEFYREALELDDEDVVVFTGEVRPDDRAALWDDARIVIATPQVVENDLVGNRI 134
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
+ + DE HRATG+YAY + + ++A+PG ++ I + +NL
Sbjct: 135 SLADVTHCTFDECHRATGDYAYNYIADRYHADAENPLVTGMSASPGDDEEAILEVCENLG 194
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
+S + E+D DV+ Y H+ ++ +E+ + VEI + I EVI+ S+L +G+ N
Sbjct: 195 LSDVAVMTENDADVAEYTHDTSVDWKRIELPEVVVEIRDAINEVIKDRLSQLKELGVT-N 253
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS------- 395
+ +S ++ + + R + + E Y G + L IR+L ++
Sbjct: 254 KSSADISEREIQQIQGQLRDL-------MNNDQSEGYQG-MSLLAEIRKLRTAVTYVETQ 305
Query: 396 --HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVD 453
+R +E L+E + ++ + KV+ M+++ S+ PK + +L +
Sbjct: 306 SVESLRRYFERLKEAARSSGASKADQRLVSEPKVREAMRKAESYNDLHPKFRQTRMLLAE 365
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
++ + RVI+F+ R + +++ L+ D +F+GQS S+G +Q QQ
Sbjct: 366 TLGIENGE--RVIVFTESRDTAETLVDFLS---DHFTTQKFVGQSDTDGSEGMTQTQQQE 420
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
L++FR G + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 421 TLDRFRNGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRAIQRKGRTGRQAEGRV 478
>gi|55379328|ref|YP_137178.1| Hef nuclease [Haloarcula marismortui ATCC 43049]
gi|55232053|gb|AAV47472.1| ATP-dependent RNA helicase homolog eIF-4A [Haloarcula marismortui
ATCC 43049]
Length = 852
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 141/478 (29%), Positives = 244/478 (51%), Gaps = 24/478 (5%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + +TA +TLV LPTGLGKT ++ +V GK + AP+
Sbjct: 16 VTPEFLENRRYQTELAETASGDHTLVCLPTGLGKTTVSLLVTAERLNAVG-GKSLMLAPT 74
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q E + + E + TG++ P RA+ W R+ TPQV+E D+
Sbjct: 75 KPLVQQHAEFYREALELDDEDVVVFTGEVRPDDRAALWDDARIVIATPQVVENDLVGNRI 134
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
+ + DE HRATG+YAY + + ++A+PG ++ I + +NL
Sbjct: 135 SLADVTHCTFDECHRATGDYAYNYIADRYHADAENPLVTGMSASPGDDEEAILEVCENLG 194
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
+S + E+D DV+ Y H+ ++ +E+ + VEI + I EVI+ S+L +G+ N
Sbjct: 195 LSDVAVMTENDADVAEYTHDTSVDWKRIELPEVVVEIRDAINEVIKDRLSQLKELGVT-N 253
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS------- 395
+ +S ++ + + R + + E Y G + L IR+L ++
Sbjct: 254 KSSADISEREIQQIQGQLRDL-------MNNDQSEGYQG-MSLLAEIRKLRTAVTYVETQ 305
Query: 396 --HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVD 453
+R +E L+E + ++ + KV+ M+++ S+ PK + +L +
Sbjct: 306 SVESLRRYFERLKEAARSSGASKADQRLVSEPKVREAMRKAESYNDLHPKFRQTRMLLAE 365
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
++ + RVI+F+ R + +++ L+ D +F+GQS S+G +Q QQ
Sbjct: 366 TLGIENGE--RVIVFTESRDTAETLVDFLS---DHFTTQKFVGQSDTDGSEGMTQTQQQE 420
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
L++FR G + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 421 TLDRFRNGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRAIQRKGRTGRQAEGRV 478
>gi|448680086|ref|ZP_21690525.1| Hef nuclease [Haloarcula argentinensis DSM 12282]
gi|445769734|gb|EMA20807.1| Hef nuclease [Haloarcula argentinensis DSM 12282]
Length = 839
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/470 (29%), Positives = 242/470 (51%), Gaps = 24/470 (5%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + +TA +TLV LPTGLGKT ++ +V GK + AP++PLV Q
Sbjct: 24 RRYQTELAETASAGHTLVCLPTGLGKTTVSLLVTAERLNAVG-GKSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
E + + E + TG++ P RA W+ R+ TPQV+E D+ + +
Sbjct: 83 EFYREALELDDEDVVVFTGEVRPDDRAELWEDARIVIATPQVVENDLVGNRISLADVTHC 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG +++ I + +NL +S +
Sbjct: 143 TFDECHRATGDYAYNYIADRYHADAENPLVTGMSASPGDEEEAILEVCENLGLSDVAVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV+ Y H+ +++ +E+ + VEI + I EVI+ S+L +G+ N+ +S
Sbjct: 203 EDDADVAEYTHDTRVDWNRIELPEVVVEIRDAINEVIKDRLSQLKELGVT-NKSSADISE 261
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS---------HGIRPA 401
++ + + R + + E Y G + L +R+L ++ +R
Sbjct: 262 REIQQIQGQLRDL-------MNNDQSEGYQG-MSLLAEVRKLRTAVTYVETQSVESLRRY 313
Query: 402 YEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPK 461
+E L+E + ++ + KV+ M+++ S+ PK + +L + ++ +
Sbjct: 314 FERLKEAARSSGASKADQRLVSEPKVREAMRKAESYDDLHPKFRQTRMLLAETLGIENGE 373
Query: 462 HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG 521
RVI+F+ R + +++ L+ D +F+GQS S+G +Q QQ L++FR G
Sbjct: 374 --RVIVFTESRDTAETLVDFLS---DHFTTQKFVGQSDTDGSEGMTQTQQQETLDRFRNG 428
Query: 522 GYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 429 EFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRAIQRKGRTGRQAEGRV 478
>gi|448433353|ref|ZP_21585874.1| Hef nuclease [Halorubrum tebenquichense DSM 14210]
gi|445686366|gb|ELZ38690.1| Hef nuclease [Halorubrum tebenquichense DSM 14210]
Length = 842
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 141/462 (30%), Positives = 225/462 (48%), Gaps = 8/462 (1%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + A +TLV LPTGLGKT ++ +V GK +F AP++PLV Q
Sbjct: 21 RRYQLQLADAAADEHTLVCLPTGLGKTTVSLLVTAERLHE-AGGKALFLAPTKPLVQQHA 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP E + TG + P RA+ W R+ TPQV+E D+ ++ + L
Sbjct: 80 DFYREALSIPDEEIVVFTGDVKPDDRAALWDDARIVIATPQVVENDLVGNRISLRDVTHL 139
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG + I+ + +NL + +E
Sbjct: 140 TFDECHRATGDYAYVYIAERYHADAADPLVTGMSASPGGDTEEIETVCENLGLVNVEVMT 199
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV Y H+ ++ +V + E + I + + EVI +L ++G+ N LS
Sbjct: 200 EEDADVDEYTHDTDVQWEQVTLPDEVLAIRDALNEVITDRLEKLKSLGVT-NTTNPDLSQ 258
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFG-EVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
DL R K ++ + G A L + S +R +E E
Sbjct: 259 KDLNKMRGKLKKMMDNDQSDGYKGMSTHAEVMKLRRATELVETQSVESVRRYFERQREAA 318
Query: 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469
+ ++ + KV+ M+++ S PK SK +L + + R I+F+
Sbjct: 319 RSSGASKASQRMVADPKVREAMRKAESFDGLHPKFSKARILLAETLGIDGGE--RAILFT 376
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
R + ++ L+ D+ K F+GQ S G SQK QQ L++F+AG + V+V+T
Sbjct: 377 ESRDTAEALVEFLSASFDVRK---FVGQGDKDGSDGMSQKQQQETLDEFKAGEFEVLVST 433
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
S+ EEGLD+ EVDLV ++ + +R IQR GRTGR+ +G++
Sbjct: 434 SVAEEGLDVPEVDLVCFYEPVPTAIRSIQRKGRTGRQAEGKV 475
>gi|448560390|ref|ZP_21633838.1| Hef nuclease [Haloferax prahovense DSM 18310]
gi|445722040|gb|ELZ73703.1| Hef nuclease [Haloferax prahovense DSM 18310]
Length = 864
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 142/491 (28%), Positives = 237/491 (48%), Gaps = 50/491 (10%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + TA +TLV LPTGLGKT ++ +V + GK +F AP+
Sbjct: 15 LAPSFIERRLYQIRLAGTARNGHTLVCLPTGLGKTTVSLLVTAQRL-YDVGGKSLFLAPT 73
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + + +P + + TG + P RA W+ ++ TPQV+E D+
Sbjct: 74 KPLVQQHADFYREALNVPDDEIVVFTGDVRPDDRAELWQEAQIVIATPQVIENDLIGNRI 133
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + L DE HRA+G+YAY + + ++A+PG ++ I + +NL
Sbjct: 134 SLRDVTHLTFDECHRASGDYAYVYIAERYHADAEDPLVTGMSASPGGDEEAILEVCENLG 193
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I +E E D DVS Y H+ +E +++ E +EI + + EVI +L +G+ +
Sbjct: 194 IVDVEVMTEEDADVSEYTHDTDVEWNRIQLPDEILEIRDALNEVITDRLEKLKQLGVTK- 252
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR--RLLSSHG--- 397
+ P++ Q K + A L+ + +S+H
Sbjct: 253 --------------------STKPDISQKKLNRMRAELQRLMNADKSEGYKGMSTHAEVM 292
Query: 398 -IRPAYEMLEEKLKQGSFARFMSKNEDIR----------------KVKLLMQQSISHGAQ 440
+R A E++E + + S R+ + + KV+ M+++ S
Sbjct: 293 KLRRAVELVETQSVE-SVRRYFERQRNAARSSGASKASQRLVAEPKVREAMRKAESFDGL 351
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG 500
PK K +L + +D + RVI+F+ R + + L+ + F+GQ
Sbjct: 352 HPKFRKTRILLAETLGIQDGE--RVIVFTESRDTAEALTEFLS---ESFSVRRFVGQGDR 406
Query: 501 KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+ S G +Q QQ L+KFR+G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R IQR
Sbjct: 407 EGSDGMTQNEQQETLDKFRSGEFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRK 466
Query: 561 GRTGRKHDGRI 571
GRTGR+ DGR+
Sbjct: 467 GRTGRQADGRV 477
>gi|448582933|ref|ZP_21646412.1| Hef nuclease [Haloferax gibbonsii ATCC 33959]
gi|445730387|gb|ELZ81976.1| Hef nuclease [Haloferax gibbonsii ATCC 33959]
Length = 871
Score = 220 bits (561), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 143/491 (29%), Positives = 237/491 (48%), Gaps = 50/491 (10%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + TA +TLV LPTGLGKT ++ +V GK +F AP+
Sbjct: 15 LAPSFIERRLYQIRLAGTARNGHTLVCLPTGLGKTTVSLLVTAQRLHDVG-GKSLFLAPT 73
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + + +P + + TG + P RA W+ ++ TPQV+E D+
Sbjct: 74 KPLVQQHADFYREALNVPDDEIVVFTGDVRPDDRAELWQEAQIVIATPQVIENDLIGNRI 133
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + L DE HRA+G+YAY + + ++A+PG ++ I + +NL
Sbjct: 134 SLRDVTHLTFDECHRASGDYAYVYIAERYHADAEDPLVTGMSASPGGDEEAILEVCENLG 193
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I +E E D DVS Y H+ +E +++ E +EI + + EVI +L +G+ ++
Sbjct: 194 IVDVEVMTEEDADVSEYTHDTDVEWNRIQLPDEILEIRDALNEVITDRLEKLKQLGVTKS 253
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR--RLLSSHG--- 397
P++ Q K + A L+ + +S+H
Sbjct: 254 ---------------------TKPDISQKKLNRMRAELQRLMNADKSEGYKGMSTHAEVM 292
Query: 398 -IRPAYEMLEEKLKQGSFARFMSKNEDIR----------------KVKLLMQQSISHGAQ 440
+R A E++E + + S R+ + + KV+ M+++ S
Sbjct: 293 KLRRAVELVETQSVE-SVRRYFERQRNAARSSGASKASQRLVAEPKVREAMRKAESFDGL 351
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG 500
PK K +L + +D + RVI+F+ R + + L+ + F+GQ
Sbjct: 352 HPKFRKTRILLAETLGIQDGE--RVIVFTESRDTAEALTEFLS---ESFSVRRFVGQGDR 406
Query: 501 KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+ S G +QK QQ L+KFR+G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R IQR
Sbjct: 407 EGSDGMTQKEQQETLDKFRSGEFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRK 466
Query: 561 GRTGRKHDGRI 571
GRTGR+ DGR+
Sbjct: 467 GRTGRQADGRV 477
>gi|432329297|ref|YP_007247441.1| ERCC4-like helicase [Aciduliprofundum sp. MAR08-339]
gi|432136006|gb|AGB05275.1| ERCC4-like helicase [Aciduliprofundum sp. MAR08-339]
Length = 753
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 152/465 (32%), Positives = 242/465 (52%), Gaps = 30/465 (6%)
Query: 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167
V R+YQ I ++AL NTLV LPTGLGKT+IA +V+ GKI+F AP++PLV
Sbjct: 15 VEKREYQVKIAESALKGNTLVVLPTGLGKTIIAILVLVEVLNK-KGGKILFLAPTKPLVE 73
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYL 227
Q N+ I E +TG + KR K + TPQV++ D+ SG ++
Sbjct: 74 QHARTVKNLTKI--ENLAVLTGDVGKKKRRGMIKDADIIIATPQVIQNDVISGDINLRDF 131
Query: 228 VCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLE 287
++ DEAHRA GNYAY ++ IL +TA+PG ++ I II+NL + +E
Sbjct: 132 SLIIFDEAHRAVGNYAYVYIAKKYRESRTDHLILGITASPGGDEEKIMEIIENLGVENVE 191
Query: 288 YRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQT 347
R E D DV YV +I +E+ M E E+ ++ E+ + L GL T
Sbjct: 192 IRTEEDPDVKRYVKGFQIRWVELPMPSEIKELYTKLKELYNSIITELRKFGLFVTVRKPT 251
Query: 348 LSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR-----RLLSSHGIRPAY 402
S D+L ++ +Q +I+ G+ E Y A++ I+ L + G Y
Sbjct: 252 RS--DVLRAQKIAQQ-------EIREGKTEFYQAAMLITMAIKIDYALEYLETQGFESCY 302
Query: 403 EMLEEKLKQGS------FARFMSKNEDIRKVKLLMQQSISH---GAQSPKLSKMLEVLVD 453
L +++G+ AR + ++E ++ + + + IS +PKL+ L+ +V
Sbjct: 303 NYLMRIIEEGNSKGGSKAARTLVRDERFIEI-IRVARRISERMDKMDNPKLN-ALKTIVR 360
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
+P R+I+F++FR + + + ++L + + V+A F+GQ+S +G Q+ Q
Sbjct: 361 KEIAANP-EIRIIVFTHFRETAQIVADSLNEVPN-VRAIRFVGQASKGEDRGLKQREQVE 418
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558
++E+F+ G YNV+VATS+ EEGLDI DLVI ++ S +R IQ
Sbjct: 419 IVERFKRGEYNVLVATSVAEEGLDIPATDLVIFYEPVPSEIRSIQ 463
>gi|449532076|ref|XP_004173010.1| PREDICTED: Fanconi anemia group M protein-like, partial [Cucumis
sativus]
Length = 122
Score = 219 bits (559), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 99/116 (85%), Positives = 107/116 (92%)
Query: 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLE 214
KIVF APSRPLV+QQIEACHNIVGIPQEWTIDMTG I+P KRASFW++KRVFFVTPQVLE
Sbjct: 1 KIVFTAPSRPLVLQQIEACHNIVGIPQEWTIDMTGMINPAKRASFWRSKRVFFVTPQVLE 60
Query: 215 KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
KDIQSGTCLMKYLVCLVIDEAHRA GNY+YC A+REL +PV LRILALTATPG +
Sbjct: 61 KDIQSGTCLMKYLVCLVIDEAHRALGNYSYCVAVRELTKIPVPLRILALTATPGCR 116
>gi|448632932|ref|ZP_21673930.1| Hef nuclease [Haloarcula vallismortis ATCC 29715]
gi|445752289|gb|EMA03713.1| Hef nuclease [Haloarcula vallismortis ATCC 29715]
Length = 837
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 140/478 (29%), Positives = 242/478 (50%), Gaps = 24/478 (5%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + +TA +TLV LPTGLGKT ++ +V GK + AP+
Sbjct: 16 VTPEFLENRRYQTELAETASADHTLVCLPTGLGKTTVSLLVTAERLDAVG-GKALMLAPT 74
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q E + I E + TG++ P RA+ W+ R+ TPQV+E D+
Sbjct: 75 KPLVQQHAEFYREALEIDDEDVVVFTGEVRPDDRAALWEDARIVIATPQVVENDLVGNRI 134
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
+ + DE HRATG+YAY + + ++A+PG ++ I + +NL
Sbjct: 135 SLAEVTHCTFDECHRATGDYAYNYIADRYHADAADPLVTGMSASPGDDEEAILEVCENLG 194
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
++ + E D DV+ Y H+ ++ +E+ + VEI + I EVI +L +G+ N
Sbjct: 195 LAEVAVMTEDDADVTEYTHDTSVDWNRIELPEIVVEIRDAINEVIEDRLDQLRELGVT-N 253
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS------- 395
+ +S ++ + K R + + E Y G + L IR+L ++
Sbjct: 254 KSSADISEREIQQMQGKLRDL-------MNNDQSEGYQG-MSLLAEIRKLRTAVTYVETQ 305
Query: 396 --HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVD 453
+R +E L+E + ++ + KV+ ++++ S+ PK + +L +
Sbjct: 306 SVESLRRYFERLKEAARSSGASKADQRLVSEPKVREAIRKANSYDDLHPKFRQTRMLLAE 365
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
++ + RVI+F+ R + +++ L+ D +F+GQS S+G +Q QQ
Sbjct: 366 TLGIENGE--RVIVFTESRDTAETLVDFLS---DHFTTQKFVGQSDTDGSEGMTQTQQQE 420
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
L++FR G + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 421 TLDRFRNGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRAIQRKGRTGRQAEGRV 478
>gi|374635020|ref|ZP_09706625.1| helicase domain protein [Methanotorris formicicus Mc-S-70]
gi|373563422|gb|EHP89616.1| helicase domain protein [Methanotorris formicicus Mc-S-70]
Length = 753
Score = 219 bits (558), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 239/473 (50%), Gaps = 26/473 (5%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P + R YQ I AL NTL L TGLGKT IAA+ I DGK++ AP
Sbjct: 7 LIKPNTIEARIYQQVIVANALKKNTLCVLGTGLGKTAIAALTIAGILSK-NDGKVLIIAP 65
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
SRPLV Q + N + I ++ I +TG+ P KR WK ++F TPQ++E D+ +G
Sbjct: 66 SRPLVEQHYNSMRNFLNIDEDKVIVLTGKTQPNKREKLWKDGKIFIATPQIVENDLIAGR 125
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
++ V L+ DEAH TGN++Y + ++ +L LTA+PGS I + +NL
Sbjct: 126 LNVEDFVLLIADEAHHTTGNHSYAFVANKFKG---KVHVLGLTASPGSDMDRILEVCENL 182
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
I +E R E D+DV YV +I V + +E E I + ++ L G+
Sbjct: 183 GIEHVEVRTEDDEDVKPYVAKVRIIPKRVSLPKEFEESLKLIKDALKERLKVLKEFGVTN 242
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPA 401
+ + + ++L Q L + + E+ + L+H +L + G R
Sbjct: 243 SINLTKIELIEL--------QKEIFALDRDEKYELLRIASEALKLFHALEVLETQG-RGV 293
Query: 402 YEMLEEKLKQ---GSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTK 458
+ E+L+ S ++ + I+ V L Q +I H PK K+++++ + K
Sbjct: 294 FLNYIERLRNQRTKSAKSIVNDKKIIKVVNNLRQLNIEH----PKFEKLIDIIEEILKEN 349
Query: 459 DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518
+ ++I+F+ +R +V I+ L G +KA F+GQS+ + KG SQK Q LE+F
Sbjct: 350 ND--EKIIVFAQYRDTVDKIVRLLNERG--IKAIRFVGQSN-REGKGMSQKEQIKALEEF 404
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ G NV+V+TS+ EEG+DI V+ VI ++ S +R IQR GR R G +
Sbjct: 405 KKDG-NVLVSTSVSEEGIDISTVNYVIFYEPVPSEIRFIQRRGRAARGEGGMV 456
>gi|448664269|ref|ZP_21684072.1| Hef nuclease [Haloarcula amylolytica JCM 13557]
gi|445774914|gb|EMA25928.1| Hef nuclease [Haloarcula amylolytica JCM 13557]
Length = 845
Score = 219 bits (558), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 140/478 (29%), Positives = 242/478 (50%), Gaps = 24/478 (5%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + +TA +TLV LPTGLGKT ++ +V GK + AP+
Sbjct: 16 VTPEFLENRRYQTELAETASGDHTLVCLPTGLGKTTVSLLVTAERLHAVG-GKALMLAPT 74
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q E + I E + TG++ P RA+ W+ R+ TPQV+E D+
Sbjct: 75 KPLVQQHAEFYREALEIDDEDVVVFTGEVRPDDRAALWEDARIVIATPQVVENDLVGNRI 134
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
+ + DE HRATG+YAY + + ++A+PG ++ I + +NL
Sbjct: 135 SLADVTHCTFDECHRATGDYAYNYIADRYHADAEDPLVTGMSASPGDDEEAILEVCENLG 194
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
+S + E+D DV+ Y H+ ++ +E+ + VEI + I EVI +L +G+ N
Sbjct: 195 LSEVAVMTENDADVAEYTHDTSVDWNRIELPEVVVEIRDAINEVIEDRLDQLRELGVT-N 253
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS------- 395
+ +S ++ + + R + + E Y G + L +R+L ++
Sbjct: 254 KSSADISEREIQQIQGQLRDL-------MNNDQSEGYQG-MSFLAEVRKLRTAVTYVETQ 305
Query: 396 --HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVD 453
+R +E L+E + ++ + KV+ M+++ + PK + +L +
Sbjct: 306 SVESLRRYFERLKEAARSSGASKADQRLVSEPKVREAMRKASDYDDLHPKFRQTRMLLAE 365
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
++ + RVI+F+ R + +++ L+ D +F+GQS S+G SQ QQ
Sbjct: 366 TLGIENGE--RVIVFTESRDTAETLVDFLS---DHFTTQKFVGQSDTDGSEGMSQSQQQE 420
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
L++FR G + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 421 TLDRFRDGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRAIQRKGRTGRQAEGRV 478
>gi|448578746|ref|ZP_21644122.1| Hef nuclease [Haloferax larsenii JCM 13917]
gi|445725329|gb|ELZ76953.1| Hef nuclease [Haloferax larsenii JCM 13917]
Length = 849
Score = 219 bits (558), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 144/491 (29%), Positives = 233/491 (47%), Gaps = 50/491 (10%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + A +TLV LPTGLGKT ++ +V GK +F AP+
Sbjct: 15 LVPSFIERRLYQIRLAGAARDDHTLVCLPTGLGKTTVSLLVTAQRLHEVG-GKSLFLAPT 73
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + + IP E + TG + P RA W ++ TPQV+E D+
Sbjct: 74 KPLVQQHADFYREALDIPDEDIVVFTGDVRPDDRAELWDDAQIVIATPQVVENDLIGNRV 133
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + L DE HRA+G+YAY + + ++A+PG ++ I + +NL
Sbjct: 134 SLRDVTHLTFDECHRASGDYAYVYIAERYHADAENPLVTGMSASPGGDEEAILEVCENLG 193
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I +E E D DVS Y H+ +E +++ E +EI + + EVI +L +G+ ++
Sbjct: 194 IVHVEVMTEEDADVSDYTHDTDVEWNRIQLPDEILEIRDALNEVITDRLEKLKQLGVTKS 253
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR--RLLSSHG--- 397
P++ Q K + A L+ + +S+H
Sbjct: 254 ---------------------TKPDVSQKKLNRMRAELQRLMNADKSEGYKGMSTHAEVM 292
Query: 398 -IRPAYEMLEEKLKQGSFARFMSKNEDIR----------------KVKLLMQQSISHGAQ 440
+R A E++E + + S R+ + + KV+ M+++ S
Sbjct: 293 KLRRAVELVETQSVE-SVRRYFERQRNAARSSGASKASQRLVAEPKVREAMRKAESFDGL 351
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG 500
PK + +L + +D + RVI+F+ R + + L+ F+GQ
Sbjct: 352 HPKFRETRILLAETLGIRDGE--RVIVFTESRDTAEALTEFLSQS---FSVRRFVGQGDR 406
Query: 501 KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
S G SQK QQ L+KFR+G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R IQR
Sbjct: 407 DGSDGMSQKEQQEALDKFRSGEFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRK 466
Query: 561 GRTGRKHDGRI 571
GRTGR+ DGR+
Sbjct: 467 GRTGRQADGRV 477
>gi|124485977|ref|YP_001030593.1| Hef nuclease [Methanocorpusculum labreanum Z]
gi|124363518|gb|ABN07326.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
Z]
Length = 763
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 164/473 (34%), Positives = 243/473 (51%), Gaps = 30/473 (6%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ I K AL NTLV LPTG+GKT +A +V P GKI+ AP++PLV Q +
Sbjct: 17 RAYQTNIAKHALSGNTLVVLPTGMGKTAVALLVAAE---RIPVGKILMLAPTKPLVEQHL 73
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ I + I TG P KR WK R TP+V++ D+ + +K + L
Sbjct: 74 RYFSKNLLIDTDEIIMFTGTTPPAKRIDQWKKARFCISTPEVIKNDLIAERYDLKDVSLL 133
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
V+DE HR GNYAY + +L +TA+PGS + + I +L IS +E R
Sbjct: 134 VVDECHRTVGNYAYVFIAERYNAEATDPLLLGMTASPGSDPEQVAEICQHLSISVVESRT 193
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQE---AVEINNRIWEVIRPYTSRLSAIGLLQ----NR 343
ESD DV YVH R+IE V++ ++ AV + N + + RL+++ L R
Sbjct: 194 ESDPDVRPYVHEREIEYRTVDLPEDLWLAVSVLNTMID------DRLTSLAALNYRVPKR 247
Query: 344 DYQTLSPVDLLNSRDKFR-QAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRP-- 400
+ ++ ++ L ++ + R Q P+ + + + L+ L H L S G
Sbjct: 248 EALSMKALNALMAQIQTRMQEKDPS----AYAAISIH-AELMKLRHGVTLAESQGTTAFK 302
Query: 401 AYEM-LEEKLKQGSFARFMSK-NEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTK 458
AY + LE + G+ ++ + ED R +LL PK +++ V+ + T
Sbjct: 303 AYLLRLETEGAGGAGSKAAKRIYEDARFKRLLALCQNWTKELHPKADEVVRVIQEQLITA 362
Query: 459 DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518
SR+I+F+ +R V +++ LA G + A F+GQ+S KG SQK Q + +F
Sbjct: 363 --PDSRIIVFATYRDGVSMLVDHLAKAG--IPAKRFVGQASRDTEKGLSQKEQIEAIRQF 418
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
R G Y V+VATS+GEEGLDI DLVI ++A S +R IQR GRTGR G+I
Sbjct: 419 REGEYTVLVATSVGEEGLDIPSTDLVIFYEAVPSEIRSIQRKGRTGRNSTGKI 471
>gi|448462984|ref|ZP_21597905.1| Hef nuclease [Halorubrum kocurii JCM 14978]
gi|445817487|gb|EMA67359.1| Hef nuclease [Halorubrum kocurii JCM 14978]
Length = 821
Score = 219 bits (557), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 141/469 (30%), Positives = 230/469 (49%), Gaps = 22/469 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + A +TLV LPTGLGKT ++ +V GK +F AP++PLV Q
Sbjct: 21 RRYQLQLADAAADEHTLVCLPTGLGKTTVSLLVTAERLHE-AGGKALFLAPTKPLVQQHA 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP + + TG++ P RA+ W R+ TPQV+E D+ ++ +
Sbjct: 80 DFYREALSIPDDEIVVFTGEVKPDDRAALWDDARIVIATPQVVENDLVGNRISLRDVTHC 139
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG + I+ + +NL + +E
Sbjct: 140 TFDECHRATGDYAYVYIAERYHADAADPLVTGMSASPGGDTEEIETVCENLGLVNVEVMT 199
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV Y H+ ++ +V + E + I + + EVI +L +G+ N LS
Sbjct: 200 EEDADVDEYTHDTDVQWEQVTLPDEVLAIRDALNEVITDRLEKLKQLGV-TNTTNPDLSQ 258
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA-----LITLYHIRRLL---SSHGIRPAY 402
DL R + +Q + + E Y G ++ L L+ S +R +
Sbjct: 259 KDLNKMRGQLKQ-------MMDNDQSEGYKGMSTHAEVMKLRRATELVETQSVESVRRYF 311
Query: 403 EMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462
E E + ++ + KV+ M+++ S PK SK +L + +
Sbjct: 312 ERQREAARSSGASKASQRMVADPKVREAMRKAESFDGLHPKFSKARILLAETLGINGGE- 370
Query: 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG 522
R I+F+ R + ++ L+ D+ K F+GQ + S G SQK QQ L++F+AG
Sbjct: 371 -RAILFTESRDTAEALVEFLSASFDVRK---FVGQGDKEGSDGMSQKQQQETLDEFKAGE 426
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ V+V+TS+ EEGLD+ EVDLV ++ + +R IQR GRTGR+ +G++
Sbjct: 427 FEVLVSTSVAEEGLDVPEVDLVCFYEPVPTAIRSIQRKGRTGRQAEGKV 475
>gi|448535918|ref|ZP_21622302.1| Hef nuclease [Halorubrum hochstenium ATCC 700873]
gi|445702727|gb|ELZ54668.1| Hef nuclease [Halorubrum hochstenium ATCC 700873]
Length = 821
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 141/469 (30%), Positives = 231/469 (49%), Gaps = 22/469 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + A +TLV LPTGLGKT ++ +V GK +F AP++PLV Q
Sbjct: 21 RRYQLQLADAAADEHTLVCLPTGLGKTTVSLLVTAERLHE-AGGKALFLAPTKPLVQQHA 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP + + TG + P RA+ W R+ TPQV+E D+ ++ + L
Sbjct: 80 DFYREALSIPDDEVVVFTGDVKPDDRAALWDDARIVIATPQVVENDLVGNRISLRDVTHL 139
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG + I+ + +NL + +E
Sbjct: 140 TFDECHRATGDYAYVYIAERYHADAADPLVTGMSASPGGDTEEIETVCENLGLVNVEVMT 199
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV Y H+ ++ +V + E + I + + EVI +L ++G+ N LS
Sbjct: 200 EEDADVDEYTHDTDVQWEQVTLPDEVLAIRDALNEVITDRLEKLKSLGV-TNTTNPDLSQ 258
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA-----LITLYHIRRLL---SSHGIRPAY 402
DL R K ++ + + + Y G ++ L L+ S +R +
Sbjct: 259 KDLNAMRGKLKKMMDND-------QSDGYKGMSTHAEVMKLRRATELVETQSVESVRRYF 311
Query: 403 EMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462
E E + ++ + KV+ M+++ S PK SK +L + + +
Sbjct: 312 ERQREAARSSGASKASQRMVADPKVREAMRKAESFDGLHPKFSKARILLAETLGINEGE- 370
Query: 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG 522
R I+F+ R + ++ L+ D+ K F+GQ S G SQK QQ L++F+AG
Sbjct: 371 -RAILFTESRDTAEALVEFLSASFDVRK---FVGQGDKDGSDGMSQKQQQETLDEFKAGE 426
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ V+V+TS+ EEGLD+ EVDLV ++ + +R IQR GRTGR+ +G++
Sbjct: 427 FEVLVSTSVAEEGLDVPEVDLVCFYEPVPTAIRSIQRKGRTGRQAEGKV 475
>gi|146422641|ref|XP_001487256.1| hypothetical protein PGUG_00633 [Meyerozyma guilliermondii ATCC
6260]
gi|146388377|gb|EDK36535.1| hypothetical protein PGUG_00633 [Meyerozyma guilliermondii ATCC
6260]
Length = 258
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/207 (51%), Positives = 135/207 (65%), Gaps = 1/207 (0%)
Query: 90 CHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR 149
CH ID ++ T+IYP N+ VRDYQ+ I + A + N LVALPTGLGKT IA+ V+ NF+R
Sbjct: 44 CHHVIDYDSLSTYIYPTNLEVRDYQYNIVQRAFYDNLLVALPTGLGKTFIASTVMLNFYR 103
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
WFP KI+F AP+RPLV QQI+AC I G+P ++ + + R W++K VFF T
Sbjct: 104 WFPQSKIIFMAPTRPLVAQQIKACCGITGLPSS-SVAILLDKTRRNRGEIWRSKSVFFTT 162
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGS 269
PQV+E D+ SG K +V LVIDEAHRA GNYAY + L RILALTATP S
Sbjct: 163 PQVVENDLASGLVNPKSIVLLVIDEAHRARGNYAYNNVAKFLNRFNSSYRILALTATPAS 222
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDV 296
+ +Q +IDNL IS +E R E D+
Sbjct: 223 DVEGVQEVIDNLNISKVEVRTEESIDI 249
>gi|448588730|ref|ZP_21649309.1| Hef nuclease, partial [Haloferax elongans ATCC BAA-1513]
gi|445736217|gb|ELZ87762.1| Hef nuclease, partial [Haloferax elongans ATCC BAA-1513]
Length = 757
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 144/491 (29%), Positives = 232/491 (47%), Gaps = 50/491 (10%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + A +TLV LPTGLGKT ++ +V GK +F AP+
Sbjct: 15 LVPSFIERRLYQIRLAGAARDDHTLVCLPTGLGKTTVSLLVTAQRLHEVG-GKSLFLAPT 73
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + + IP E + TG + P RA W ++ TPQV+E D+
Sbjct: 74 KPLVQQHADFYREALNIPDEDIVVFTGDVRPDDRAELWDDAQIVIATPQVVENDLIGNRV 133
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
+ + L DE HRA+G+YAY + + ++A+PG ++ I + +NL
Sbjct: 134 SLHDVTHLTFDECHRASGDYAYVYIAERYHADAENPLVTGMSASPGGDEEAILEVCENLG 193
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I +E E D DVS Y H+ +E +++ E +EI + + EVI +L +G+
Sbjct: 194 IVHVEVMTEEDADVSDYTHDTDVEWNRIQLPDEILEIRDALNEVITDRLEKLKQLGVT-- 251
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR--RLLSSHG--- 397
++ P++ Q K + A L+ + +S+H
Sbjct: 252 -------------------KSTKPDVSQKKLNRMRAELQRLMNADKSEGYKGMSTHAEVM 292
Query: 398 -IRPAYEMLEEKLKQGSFARFMSKNEDIR----------------KVKLLMQQSISHGAQ 440
+R A E++E + + S R+ + + KV+ M+++ S
Sbjct: 293 KLRRAVELVETQSVE-SVRRYFERQRNAARSSGASKASQRLVAEPKVREAMRKAESFDGL 351
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG 500
PK + +L + +D + RVI+F+ R + + L+ F+GQ
Sbjct: 352 HPKFRETRILLAETLGIRDGE--RVIVFTESRDTAEALTEFLSQS---FSVRRFVGQGDR 406
Query: 501 KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
S G SQK QQ L+KFR+G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R IQR
Sbjct: 407 DGSDGMSQKEQQEALDKFRSGEFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRK 466
Query: 561 GRTGRKHDGRI 571
GRTGR+ DGR+
Sbjct: 467 GRTGRQADGRV 477
>gi|313233376|emb|CBY24491.1| unnamed protein product [Oikopleura dioica]
Length = 985
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 157/495 (31%), Positives = 246/495 (49%), Gaps = 35/495 (7%)
Query: 100 KTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159
+ +++P + PVR YQ + AL SN LV LPTG GKTL+AA VI NF W P+ + +F
Sbjct: 42 REFVFPDDFPVRSYQQTAARAALKSNCLVCLPTGAGKTLVAAAVIRNFLDWHPNSQAIFV 101
Query: 160 APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS 219
A ++PL+ QQ EA GIP + + G S R ++ T R+ TPQ + D
Sbjct: 102 AWTKPLLNQQKEALTRDAGIPSSQSCVINGHTSAKNREEWYSTCRLICATPQTINNDAGK 161
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIID 279
M+ + +++DEAHRA G +AYC I ++ + RI+ LTATP ++ + ++
Sbjct: 162 NLINMQRIKLVIVDEAHRALGEHAYCQIISKIKAETADFRIIGLTATP--ERDKMYEVVK 219
Query: 280 NLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGL 339
NL+I L Y ++ H KIE + V+ + + + E+ + L A L
Sbjct: 220 NLHIQDLVYYPAMHPEIKK--HLVKIEEVIVKRTETENICLSLLEEIGDAILTTLKAKNL 277
Query: 340 LQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALIT------------LY 387
L + QT +P L ++KF + + P KF Y ++T L
Sbjct: 278 LSFMNIQTATPFK-LREQEKFTK----HHPSWKF----MYPRFMVTYSSNSNDLIVACLV 328
Query: 388 HIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKM 447
+R+ + ++ +K K+ + F K + + K+K ++ + G KL +
Sbjct: 329 SVRKFGMGKMVDSFDNVIPDKDKE-VWKDF--KRKAVAKLKQIIFKYKHSGEVCNKLKNL 385
Query: 448 LEVLVDHFKT-KDPKHSRVIIFSNFRGSVRDIMNALA-TIGDLVKATEFIGQSSGK---- 501
+ L +F T K+ R ++F N R V +I L V+A+ F+G +
Sbjct: 386 GQELEHYFDTMKNGYDVRALVFVNDRSIVEEIRKYLMENTSANVRASIFVGHGAPTTKLK 445
Query: 502 -ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+ SQK Q LEKF+ G NV++ATSIGEEGLDI + +LV+ +D + + R QR
Sbjct: 446 VTAPKISQKQQLEQLEKFKKGDINVLIATSIGEEGLDISDCNLVVQYDHSNNQTRNAQRS 505
Query: 561 GRTGRKHDGRIPHIF 575
GRTGRKH GRI ++
Sbjct: 506 GRTGRKHAGRIIYLM 520
>gi|292657118|ref|YP_003537015.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2]
gi|448293719|ref|ZP_21483822.1| Hef nuclease [Haloferax volcanii DS2]
gi|291371263|gb|ADE03490.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2]
gi|445569640|gb|ELY24211.1| Hef nuclease [Haloferax volcanii DS2]
Length = 858
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 141/491 (28%), Positives = 235/491 (47%), Gaps = 50/491 (10%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + TA +TLV LPTGLGKT ++ +V GK +F AP+
Sbjct: 15 LAPSFIERRLYQIRLAGTARDGHTLVCLPTGLGKTTVSLLVTAQRLHDVG-GKSLFLAPT 73
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + + +P + + TG + P RA W+ ++ TPQV+E D+
Sbjct: 74 KPLVQQHADFYREALTVPDDEIVVFTGDVRPDDRAELWQEAQIVIATPQVIENDLIGNRI 133
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + L DE HRA+G+YAY + + ++A+PG ++ I + +NL
Sbjct: 134 SLRDVTHLTFDECHRASGDYAYVYIAERYHAAAENPLVTGMSASPGGDEEAILEVCENLG 193
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I +E E D DVS Y H+ +E +++ E +EI + + EVI +L +G+
Sbjct: 194 IVDVEVMTEEDADVSEYTHDTDVEWNRIQLPDEILEIRDALNEVITDRLEKLKQLGVT-- 251
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR--RLLSSHG--- 397
++ P++ Q K + A L+ + +S+H
Sbjct: 252 -------------------KSTKPDISQKKLNRMRAELQRLMNADKSEGYKGMSTHAEVM 292
Query: 398 -IRPAYEMLEEKLKQGSFARFMSKNEDIR----------------KVKLLMQQSISHGAQ 440
+R A E++E + + S R+ + + KV+ M+++ S
Sbjct: 293 KLRRAVELVETQSVE-SVRRYFERQRNAARSSGASKASQRLVAEPKVREAMRKAESFDGL 351
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG 500
PK K +L + ++ + RVI+F+ R + + L+ + F+GQ
Sbjct: 352 HPKFRKTRILLAETLGIQNGE--RVIVFTESRDTAEALTEFLS---ESFSVRRFVGQGDR 406
Query: 501 KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+ S G +Q QQ L+KFR G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R IQR
Sbjct: 407 EGSDGMTQNEQQETLDKFRNGEFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRK 466
Query: 561 GRTGRKHDGRI 571
GRTGR+ DGR+
Sbjct: 467 GRTGRQADGRV 477
>gi|448611374|ref|ZP_21662008.1| Hef nuclease [Haloferax mucosum ATCC BAA-1512]
gi|445743806|gb|ELZ95287.1| Hef nuclease [Haloferax mucosum ATCC BAA-1512]
Length = 841
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 144/481 (29%), Positives = 235/481 (48%), Gaps = 46/481 (9%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + A +TLV LPTGLGKT ++ +V GK +F AP++PLV Q
Sbjct: 23 RLYQIRLAGAARDDHTLVCLPTGLGKTTVSLLVTAERLHD-SGGKSLFLAPTKPLVQQHA 81
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP + + TG + P RA+ W ++ TPQV+E D+ ++ + L
Sbjct: 82 DFYREALTIPDDEIVVFTGDVRPDDRAALWNDAQIVIATPQVIENDLIGNRISLRDVTHL 141
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRA+G+YAY + + ++A+PG ++ I + +NL I+ +E
Sbjct: 142 TFDECHRASGDYAYVYIAERYHADATDPLVTGMSASPGGDEEAILEVCENLGIADVEVMT 201
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV+ Y H+ +E +++ E +EI + + EVI +L +G+ ++ +S
Sbjct: 202 EEDADVAEYTHDTDVEWNRIQLPDEILEIRDALNEVITDRLEKLKHLGVARST-KPDVSQ 260
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG----IRPAYEMLE 406
DL R + ++ + + E Y G +S+H +R A E++E
Sbjct: 261 KDLNRMRGELQRLMNAD-------KSEGYKG-----------MSTHAEVMKLRRAVELVE 302
Query: 407 EKLKQGSFARFMSKNEDIR----------------KVKLLMQQSISHGAQSPKLSKMLEV 450
+ + S R+ + + KV+ M+++ S PK K +
Sbjct: 303 TQSVE-SVRRYFERQRNAARSSGASKASQRLVAEPKVREAMRKAESFDGLHPKFRKTRIL 361
Query: 451 LVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKV 510
L + D + RVI+F+ R + + L+ + F+GQ + S G SQK
Sbjct: 362 LAETLGIHDGE--RVIVFTESRDTAEALTEFLS---ESFSVRRFVGQGDREGSDGMSQKE 416
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
QQ L+KFR G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R IQR GRTGR+ DGR
Sbjct: 417 QQETLDKFRGGEFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRKGRTGRQADGR 476
Query: 571 I 571
+
Sbjct: 477 V 477
>gi|448622213|ref|ZP_21668907.1| Hef nuclease [Haloferax denitrificans ATCC 35960]
gi|445754295|gb|EMA05700.1| Hef nuclease [Haloferax denitrificans ATCC 35960]
Length = 857
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 141/491 (28%), Positives = 237/491 (48%), Gaps = 50/491 (10%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + TA +TLV LPTGLGKT ++ +V + GK +F AP+
Sbjct: 15 LAPSFIERRLYQIRLAGTARNGHTLVCLPTGLGKTTVSLLVTAQRL-YDVGGKSLFLAPT 73
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + + +P + + TG + P RA+ W+ ++ TPQV+E D+
Sbjct: 74 KPLVQQHADFYREALTVPDDEIVVFTGDVRPDDRAALWEDAQIVIATPQVIENDLIGNRI 133
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + L DE HRA+G+YAY + + ++A+PG ++ I + +NL
Sbjct: 134 SLRDVTHLTFDECHRASGDYAYVYIAERYHADAEDPLVTGMSASPGGDEEAILEVCENLG 193
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I +E E D DVS Y H+ +E +++ E +EI + + EVI +L +G+ +
Sbjct: 194 IVDVEVMTEEDADVSEYTHDTDVEWNRIQLPDEILEIRDALNEVITDRLEKLKQLGVTK- 252
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR--RLLSSHG--- 397
+ P++ Q K + A L+ + +S+H
Sbjct: 253 --------------------STKPDISQKKLNRMRAELQRLMNADKSEGYKGMSTHAEVM 292
Query: 398 -IRPAYEMLEEKLKQGSFARFMSKNEDIR----------------KVKLLMQQSISHGAQ 440
+R A E++E + + S R+ + + KV+ M+++ S
Sbjct: 293 KLRRAVELVETQSVE-SVRRYFERQRNAARSSGASKASQRLVAEPKVREAMRKAESFDGL 351
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG 500
PK K +L + ++ + RVI+F+ R + + L+ + F+GQ
Sbjct: 352 HPKFRKTRILLAETLGIQNGE--RVIVFTESRDTAEALTEFLS---ESFSVRRFVGQGDR 406
Query: 501 KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+ S G +Q QQ L+KFR G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R IQR
Sbjct: 407 EGSDGMTQNEQQETLDKFRNGEFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRK 466
Query: 561 GRTGRKHDGRI 571
GRTGR+ DGR+
Sbjct: 467 GRTGRQADGRV 477
>gi|448683610|ref|ZP_21692327.1| Hef nuclease [Haloarcula japonica DSM 6131]
gi|445783749|gb|EMA34574.1| Hef nuclease [Haloarcula japonica DSM 6131]
Length = 832
Score = 216 bits (551), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 139/478 (29%), Positives = 242/478 (50%), Gaps = 24/478 (5%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + +TA +TLV LPTGLGKT ++ +V GK + AP+
Sbjct: 16 VTPEFLENRRYQTDLAETASAGHTLVCLPTGLGKTTVSLLVTAERLNAVG-GKALMLAPT 74
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q E + + E + TG++ P RA+ W R+ TPQV+E D+
Sbjct: 75 KPLVQQHAEFYREALELDDEDVVVFTGEVRPDDRAALWDDARIVIATPQVVENDLVGNRI 134
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
+ + DE HRATG+YAY + + ++A+PG ++ I + +NL
Sbjct: 135 SLADVTHCTFDECHRATGDYAYNYIADRYHADAENPLVTGMSASPGDDEEAILEVCENLG 194
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
+ + E D DV+ + H+ ++ +E+ + VEI + I EVI+ S+L +G+ N
Sbjct: 195 LVEVAVMTEDDADVAEFTHDTSVDWNRIELPEVVVEIRDAINEVIKDRLSQLKELGVT-N 253
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS------- 395
+ +S ++ + + R + + E Y G + L IR+L ++
Sbjct: 254 KSSADISEREIQQIQGQLRDL-------MNNDQSEGYQG-MSLLAEIRKLRTAVTYVETQ 305
Query: 396 --HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVD 453
+R +E L+E + ++ + KV+ M+++ S+ PK + +L +
Sbjct: 306 SVESLRRYFERLKEAARSSGASKADQRLVSEPKVREAMRKAESYDDLHPKFRQTRMLLAE 365
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
++ + RVI+F+ R + +++ L+ D +F+GQS S+G +Q QQ
Sbjct: 366 TLGIENGE--RVIVFTESRDTAETLVDFLS---DHFTTQKFVGQSDTDGSEGMTQTQQQE 420
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
L++FR G + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 421 TLDRFRNGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRAIQRKGRTGRQAEGRV 478
>gi|15679414|ref|NP_276531.1| Hef nuclease [Methanothermobacter thermautotrophicus str. Delta H]
gi|2622527|gb|AAB85892.1| ATP-dependent RNA helicase, eIF-4A family [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 738
Score = 216 bits (550), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 136/463 (29%), Positives = 244/463 (52%), Gaps = 16/463 (3%)
Query: 102 WIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160
I P + R YQ + + N+++ PT LGKT++A +V R + K++ +
Sbjct: 9 LIKPEKIEARTYQQLLAADVIRKGNSMIVAPTALGKTVVAVLVAAERLRKYRGSKVLILS 68
Query: 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
PS+PL +Q E+ + +TG I P +R W ++ TPQ +E DI +G
Sbjct: 69 PSKPLAIQHEESFREFM---LATCTSLTGSIKPEERKERWIKSQIISATPQTVESDILAG 125
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDN 280
++ + +V DE HRA G+Y+Y + IL LTA+PG+ + I+ + +N
Sbjct: 126 RYDLRDVSLIVFDECHRAVGSYSYVFLASNYIQNARHPLILGLTASPGADEDKIKTVCEN 185
Query: 281 LYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLL 340
L+++ + + E D DV Y+ KIE ++V M E +I + +V++ L +G++
Sbjct: 186 LFMNEVVVKTEGDPDVRPYLKPIKIEWVKVRMTPELEDIRELLRKVLKNRLKMLKNLGVI 245
Query: 341 QNRDYQTLSPVDLLNSRDKF--RQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGI 398
D ++ DLL +R + R A + P+ + + + + I + H LL + GI
Sbjct: 246 ---DTISVGKKDLLKARGRVQNRIARSTSPPRACYRAI-SLLASCINVEHALELLETQGI 301
Query: 399 RPAYE-MLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKT 457
RP ++ +L K K+ A+ + + D + L ++++ G + PKL +++E+L K
Sbjct: 302 RPLHQYLLRLKEKKTKAAKGLLADPDFTRAMHLTRRAMMSGVEHPKLDRLMEILKRELKG 361
Query: 458 KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEK 517
+ +R+I+F+ FR ++ +I G + A +F GQ+S KG +QK Q+ +++
Sbjct: 362 DE---ARIIVFTQFRDTLEEIYQRCKREG--INAVKFYGQNSRSGEKGLTQKQQRDIIKS 416
Query: 518 FRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
FR G ++V+++TS+ EEG+DI VDLV+ ++ S +RMIQR
Sbjct: 417 FRMGNHDVLLSTSVAEEGIDIPSVDLVVMYEPVPSEIRMIQRR 459
>gi|448573743|ref|ZP_21641226.1| Hef nuclease [Haloferax lucentense DSM 14919]
gi|445718649|gb|ELZ70339.1| Hef nuclease [Haloferax lucentense DSM 14919]
Length = 855
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 141/491 (28%), Positives = 235/491 (47%), Gaps = 50/491 (10%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + TA +TLV LPTGLGKT ++ +V GK +F AP+
Sbjct: 15 LAPSFIERRLYQIRLAGTARDGHTLVCLPTGLGKTTVSLLVTAQRLHDVG-GKSLFLAPT 73
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + + +P + + TG + P RA W+ ++ TPQV+E D+
Sbjct: 74 KPLVQQHADFYREALTVPDDEIVVFTGDVRPDDRAELWQEAQIVIATPQVIENDLIGNRI 133
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + L DE HRA+G+YAY + + ++A+PG ++ I + +NL
Sbjct: 134 SLRDVTHLTFDECHRASGDYAYVYIAERYHADAENPLVTGMSASPGGDEEAILEVCENLG 193
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I +E E D DVS Y H+ +E +++ E +EI + + EVI +L +G+ +
Sbjct: 194 IVDVEVMTEEDADVSEYTHDTDVEWNRIQLPDEILEIRDALNEVITDRLEKLKQLGVTK- 252
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR--RLLSSHG--- 397
+ P++ Q K + A L+ + +S+H
Sbjct: 253 --------------------STKPDISQKKLNRMRAELQRLMNADKSEGYKGMSTHAEVM 292
Query: 398 -IRPAYEMLEEKLKQGSFARFMSKNEDIR----------------KVKLLMQQSISHGAQ 440
+R A E++E + + S R+ + + KV+ M+++ S
Sbjct: 293 KLRRAVELVETQSVE-SVRRYFERQRNAARSSGASKASQRLVAEPKVREAMRKAESFDGL 351
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG 500
PK K +L + ++ + RVI+F+ R + + L+ + F+GQ
Sbjct: 352 HPKFRKTRILLAETLGIQNGE--RVIVFTESRDTAEALTEFLS---ESFSVRRFVGQGDR 406
Query: 501 KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+ S G +Q QQ L+KFR G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R IQR
Sbjct: 407 EGSDGMTQNEQQETLDKFRNGEFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRK 466
Query: 561 GRTGRKHDGRI 571
GRTGR+ DGR+
Sbjct: 467 GRTGRQADGRV 477
>gi|344213340|ref|YP_004797660.1| Hef nuclease/ATP-dependent RNA helicase-like protein eIF-4A
[Haloarcula hispanica ATCC 33960]
gi|343784695|gb|AEM58672.1| Hef nuclease / ATP-dependent RNA helicase-like protein eIF-4A
[Haloarcula hispanica ATCC 33960]
Length = 836
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 138/478 (28%), Positives = 241/478 (50%), Gaps = 24/478 (5%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + +TA +TLV LPTGLGKT ++ +V GK + AP+
Sbjct: 16 VTPEFLENRRYQTELAETASGDHTLVCLPTGLGKTTVSLLVTAERLHAVG-GKALMLAPT 74
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q E + + E + TG++ P RA+ W+ R+ TPQV+E D+
Sbjct: 75 KPLVQQHAEFYREALELDDEDVVVFTGEVRPDDRAALWEDARIVIATPQVVENDLVGNRI 134
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
+ + DE HRATG+YAY + + ++A+PG ++ I + +NL
Sbjct: 135 SLADVTHCTFDECHRATGDYAYNYIADRYHADAENPLVTGMSASPGDDEEAILEVCENLG 194
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
++ + E+D DV+ Y H+ ++ +E+ VEI + I EVI +L +G+ N
Sbjct: 195 LNEVAVMTENDADVAEYTHDTSVDWNRIELPDIVVEIRDAINEVIEDRLDQLRELGVT-N 253
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS------- 395
+ +S ++ + + R + + E Y G + L +R+L ++
Sbjct: 254 KSSADISEREIQQIQGQLRDL-------MNNDQSEGYQG-MSFLAEVRKLRTAVTYVETQ 305
Query: 396 --HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVD 453
+R +E L+E + ++ + KV+ M+++ + PK + +L +
Sbjct: 306 SVESLRRYFERLKEAARSSGASKADQRLVSEPKVREAMRKASDYDDLHPKFRQTRMLLAE 365
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
++ + RVI+F+ R + +++ L+ D +F+GQS S+G SQ QQ
Sbjct: 366 TLGIENGE--RVIVFTESRDTAETLVDFLS---DHFTTQKFVGQSDTDGSEGMSQSQQQE 420
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
L++FR G + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 421 TLDRFRDGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRAIQRKGRTGRQAEGRV 478
>gi|333910260|ref|YP_004483993.1| helicase [Methanotorris igneus Kol 5]
gi|333750849|gb|AEF95928.1| helicase domain protein [Methanotorris igneus Kol 5]
Length = 791
Score = 216 bits (549), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 153/477 (32%), Positives = 237/477 (49%), Gaps = 38/477 (7%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P + R YQ I +AL NTL L TGLGKT IAA+ I DGK++ AP
Sbjct: 7 LIKPNTIEARIYQQVIVASALKKNTLCVLGTGLGKTAIAALTIAGILSK-KDGKVLIIAP 65
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
SRPLV Q + N + I ++ I +TG+ P KR WK ++F TPQ++E D+ +G
Sbjct: 66 SRPLVEQHYNSMRNFLNIDEDKIIVLTGKTPPNKREELWKEGKIFIATPQIVENDLIAGR 125
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+ V L+ DEAH TGN++Y + ++ +L LTA+PGS I + +NL
Sbjct: 126 LNVDDFVLLIADEAHHTTGNHSYTFVANKFKG---KVHVLGLTASPGSDMDRILEVCENL 182
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
I +E R E D+DV Y+ +I V + +E E I + ++ L G++
Sbjct: 183 GIEHVEIRTEDDEDVKPYIAKVRIIPKRVPLPKEFEESLKLIKDALKERLKVLKESGVIN 242
Query: 342 NRDYQTLSPVDL------LNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395
+ + ++L L+ +K+ E+ + L+H +L +
Sbjct: 243 SINLTKTELIELQKEIFALDGDEKY--------------ELLRIASEALKLFHALEVLET 288
Query: 396 HGIRPAYEMLEEKL---KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLV 452
G R + E+L + S ++ I+ V L Q I H PK K++E++
Sbjct: 289 QG-RGVFLNYIERLSNQRTKSAKSIVNDERIIKVVNNLRQLDIEH----PKFDKLVEIVE 343
Query: 453 DHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQ 512
+ K + ++I+F+ +R +V I+ L G +KA F+GQS+ + KG SQK Q
Sbjct: 344 EILKKN--RDEKIIVFAQYRDTVDKIVRLLNERG--IKAIRFVGQSN-REGKGMSQKEQI 398
Query: 513 AVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDG 569
LE+F+ G NV+V+TS+ EEG+DI V+ VI ++ S +R IQR GR R G
Sbjct: 399 KALEEFKKNG-NVLVSTSVSEEGIDISAVNYVIFYEPVPSEIRFIQRRGRAARGEGG 454
>gi|409723155|ref|ZP_11270483.1| Hef nuclease [Halococcus hamelinensis 100A6]
gi|448722439|ref|ZP_21704974.1| Hef nuclease [Halococcus hamelinensis 100A6]
gi|445789439|gb|EMA40124.1| Hef nuclease [Halococcus hamelinensis 100A6]
Length = 827
Score = 215 bits (548), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 141/477 (29%), Positives = 233/477 (48%), Gaps = 22/477 (4%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + ++A +TLV LPTGLGKT ++ +V G + AP+
Sbjct: 16 VEPDVLERRRYQVELARSAASGHTLVCLPTGLGKTTVSLLVTAGRLDE-AGGTSLLLAPT 74
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + IP + TG++SP RA+ W+ RV TPQV+E D+ G
Sbjct: 75 KPLVTQHAAFYREALTIPDDEVAVFTGEVSPDDRAALWERARVVIATPQVVENDLIGGRI 134
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
+ L DE HRA+GNYAY + + + ++A+PG ++ I+ + +NL
Sbjct: 135 DLSDTTHLTFDECHRASGNYAYNYIAERYHADAERPLVTGMSASPGGDEEGIRSVCENLG 194
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
++++ E D DV+ Y HN +E V + +E + I N + VI RL +G+ +
Sbjct: 195 LASVAVMTEEDADVAQYTHNTDVEWERVTLPEEILAIRNSLVAVIEDRLERLKELGVTRT 254
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI--TLYHIRRLL------S 394
+S DL R + R+ + + E Y G + + +RR + S
Sbjct: 255 TSAD-VSQRDLNRMRGELRKLMDND-------QSEGYEGMSVHAEVMKLRRAVTLAETQS 306
Query: 395 SHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDH 454
+R +E + ++ + KV+ M+Q+ + PK + +L
Sbjct: 307 VESLRRYFERQRNAARSSGASKASQRLVSDPKVREAMEQAEGYDDLHPKFRRTRILLAQC 366
Query: 455 FKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAV 514
+ + RVI+F+ R + + L G + +F+GQ + S G +Q QQ
Sbjct: 367 LGIEGGE--RVIVFTESRDTAETLTEFL---GAHFETRKFVGQGDKEGSDGMTQTEQQET 421
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
L+ FRAG + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 422 LDAFRAGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQAEGRV 478
>gi|428179218|gb|EKX48090.1| hypothetical protein GUITHDRAFT_52228, partial [Guillardia theta
CCMP2712]
Length = 202
Score = 215 bits (548), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/202 (50%), Positives = 143/202 (70%), Gaps = 1/202 (0%)
Query: 104 YPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163
+P+N VR YQ I +A+ NTLV+LPTGLGKTLIAAV+++N+ WFPD I+F AP++
Sbjct: 1 FPLNPQVRRYQRDIILSAVQKNTLVSLPTGLGKTLIAAVLMHNYMTWFPDRIIIFLAPTK 60
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL 223
PLV QQ+EAC ++G+ +MTG + + R + W+T+ +FF+TPQ+L+ DI G C
Sbjct: 61 PLVKQQLEACSRVMGVSSRQIAEMTGSANVSNRRNLWQTRSIFFMTPQILDNDICRGDCP 120
Query: 224 MKYLVCLVIDEAHRATGNYAYCTAIREL-MSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
+ +V LV+DEAHRA G +A ++ +L V LRILALTATPGSK + IQ++I NL
Sbjct: 121 AEKVVLLVVDEAHRAIGRHAIVKSVEQLNHRVSAGLRILALTATPGSKLERIQNVISNLM 180
Query: 283 ISTLEYRNESDQDVSSYVHNRK 304
IS LE +NE D+D+ +VHN++
Sbjct: 181 ISNLEIKNEEDEDIQQHVHNKE 202
>gi|84488838|ref|YP_447070.1| Hef nuclease [Methanosphaera stadtmanae DSM 3091]
gi|84372157|gb|ABC56427.1| predicted ERCC4-like helicase [Methanosphaera stadtmanae DSM 3091]
Length = 752
Score = 215 bits (548), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 139/468 (29%), Positives = 242/468 (51%), Gaps = 20/468 (4%)
Query: 111 RDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ + + L NT++ PT +GKT+IAA+V + + + KI+ APS+PL +Q
Sbjct: 18 RLYQQNLAMSVLKKGNTMIVAPTAMGKTVIAALVSAERLKHYKNSKILILAPSKPLTLQH 77
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229
H+ + +TG P+ R W +V TPQ +E DI S + +
Sbjct: 78 ---EHSFKKFLKASVTSLTGNDKPSDRKKLWNENQVICATPQTIESDIISKEYNFEDISL 134
Query: 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289
L++DE H A G+Y+Y ++ + IL LTA+PG ++ I+ + N+Y++ + +
Sbjct: 135 LILDECHHAVGSYSYVYLAQKYVQQAKNQLILGLTASPGWEESKIKEVSHNIYVNEIIIK 194
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
+E D DV+ Y + + + I+V++ +E EI + + E ++ L +G++ + +
Sbjct: 195 SEDDADVAPYFNQVQTKWIKVKLTEELKEIKDLLSETLKIRLRTLKKLGIIDSISKPSKR 254
Query: 350 PVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPA---YEMLE 406
+ + R + + A N P+ ++ + +I + H + LL + I+ + LE
Sbjct: 255 EILVEQKRLQQKIASSSN-PKKEYFTGVSILTEVINIMHSQELLETQSIKTLNNYFNKLE 313
Query: 407 EKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVL---VDHFKTKDPKHS 463
+K + A+ + + K LL ++ PK+ +++E+L +D D K S
Sbjct: 314 KKKTKA--AKSLKNDYKFNKAVLLTRRYKQQDIDHPKMKRLIELLNQIID-----DDKKS 366
Query: 464 RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGY 523
+VI+FS FR + + I + +KA F GQ+S + KG SQK Q + F+ Y
Sbjct: 367 KVIVFSQFRDTTKSIYENCN--KNNLKALRFYGQASRENDKGLSQKKQIETINAFKNEDY 424
Query: 524 NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
N++++TS+ EEG+DI VD VI ++ S +RMIQR GRTGRKH G +
Sbjct: 425 NILISTSVAEEGIDIPSVDYVILYEPVPSEIRMIQRKGRTGRKHSGEM 472
>gi|448597893|ref|ZP_21654818.1| Hef nuclease, partial [Haloferax alexandrinus JCM 10717]
gi|445739354|gb|ELZ90863.1| Hef nuclease, partial [Haloferax alexandrinus JCM 10717]
Length = 862
Score = 215 bits (548), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 141/491 (28%), Positives = 235/491 (47%), Gaps = 50/491 (10%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + TA +TLV LPTGLGKT ++ +V GK +F AP+
Sbjct: 15 LAPSFIERRLYQIRLAGTARDGHTLVCLPTGLGKTTVSLLVTAQRLHDVG-GKSLFLAPT 73
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + + +P + + TG + P RA W+ ++ TPQV+E D+
Sbjct: 74 KPLVQQHADFYREALTVPDDEIVVFTGDVRPDDRAELWQEAQIVIATPQVIENDLIGNRI 133
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + L DE HRA+G+YAY + + ++A+PG ++ I + +NL
Sbjct: 134 SLRDVTHLTFDECHRASGDYAYVYIAERYHADAENPLVTGMSASPGGDEEAILEVCENLG 193
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I +E E D DVS Y H+ +E +++ E +EI + + EVI +L +G+ +
Sbjct: 194 IVDVEVMTEEDADVSEYTHDTDVEWNRIQLPDEILEIRDALNEVITDRLEKLKQLGVTK- 252
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR--RLLSSHG--- 397
+ P++ Q K + A L+ + +S+H
Sbjct: 253 --------------------STKPDISQKKLNRMRAELQRLMNADKSEGYKGMSTHAEVM 292
Query: 398 -IRPAYEMLEEKLKQGSFARFMSKNEDIR----------------KVKLLMQQSISHGAQ 440
+R A E++E + + S R+ + + KV+ M+++ S
Sbjct: 293 KLRRAVELVETQSVE-SVRRYFERQRNAARSSGASKASQRLVAEPKVREAMRKAESFDGL 351
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG 500
PK K +L + ++ + RVI+F+ R + + L+ + F+GQ
Sbjct: 352 HPKFRKTRILLAETLGIQNGE--RVIVFTESRDTAEALTEFLS---ESFSVRRFVGQGDR 406
Query: 501 KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+ S G +Q QQ L+KFR G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R IQR
Sbjct: 407 EGSDGMTQNEQQETLDKFRNGEFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRK 466
Query: 561 GRTGRKHDGRI 571
GRTGR+ DGR+
Sbjct: 467 GRTGRQADGRV 477
>gi|313125011|ref|YP_004035275.1| ercc4-like helicase [Halogeometricum borinquense DSM 11551]
gi|448287417|ref|ZP_21478629.1| Hef nuclease [Halogeometricum borinquense DSM 11551]
gi|312291376|gb|ADQ65836.1| ERCC4-like helicase [Halogeometricum borinquense DSM 11551]
gi|445572297|gb|ELY26838.1| Hef nuclease [Halogeometricum borinquense DSM 11551]
Length = 843
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 144/489 (29%), Positives = 241/489 (49%), Gaps = 46/489 (9%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + A ++TLV LPTGLGKT ++ +V GK +F AP+
Sbjct: 15 LSPSFIERRLYQIRLASAARDAHTLVCLPTGLGKTTVSLLVTAERLHEVG-GKALFLAPT 73
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + + IP + + TG + P RA+ W R+ TPQV+E D+
Sbjct: 74 KPLVQQHADFYREALEIPDDEIVVFTGDVRPDDRAALWDDARIVIATPQVVENDLIGNRI 133
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + L DE HR TG+YAY + + + ++A+PG +++I + +NL
Sbjct: 134 SLREVTHLTFDECHRGTGDYAYVYIAERYHADAERPLVTGMSASPGGDKESILEVCENLG 193
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
+ +E E D DV Y ++ +E +++ E + I + + EVI+ +L ++G+
Sbjct: 194 LVEVEVMTEEDADVDEYTYDTDVEWERIQLPDEILAIRDAVNEVIKDRLEKLKSLGV--- 250
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG----I 398
T SP D+ + +A L + + E Y G +S+H +
Sbjct: 251 --TNTTSP-DVSQKQLNGMRAELQKL--MNNDQSEGYKG-----------MSTHAEVMKL 294
Query: 399 RPAYEMLEEKLKQGSFARFMSKNEDIR----------------KVKLLMQQSISHGAQSP 442
R A E++E + + S R+ + + KV+ M+++ S P
Sbjct: 295 RRAVELVETQSVE-SVRRYFERQRNAARSSGASKASQRLVAEPKVREAMRKAESFDGLHP 353
Query: 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKA 502
K S+ +L +D + RVI+F+ R + + + L+ D A F+GQ +
Sbjct: 354 KFSQTRILLAQTLGIQDGE--RVIVFTESRDTAEALTDFLSESFD---ARRFVGQGDKEG 408
Query: 503 SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
S G +QK QQ L++FR G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R IQR GR
Sbjct: 409 SDGMTQKEQQETLDEFRNGEFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRKGR 468
Query: 563 TGRKHDGRI 571
TGR+ +GR+
Sbjct: 469 TGRQAEGRV 477
>gi|448489210|ref|ZP_21607584.1| Hef nuclease [Halorubrum californiensis DSM 19288]
gi|445695155|gb|ELZ47266.1| Hef nuclease [Halorubrum californiensis DSM 19288]
Length = 814
Score = 214 bits (545), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 139/469 (29%), Positives = 228/469 (48%), Gaps = 22/469 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + A +TLV LPTGLGKT ++ +V GK +F AP++PLV Q
Sbjct: 21 RRYQLELADAAADEHTLVCLPTGLGKTTVSLLVTAERLHE-AGGKALFLAPTKPLVQQHA 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP + + TG + P R + W R+ TPQV+E D+ ++ + L
Sbjct: 80 DFYREALSIPDDDIVVFTGDVKPDDRVALWDDARIVIATPQVVENDLVGNRISLRDVTHL 139
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG + I+ + +NL + +E
Sbjct: 140 TFDECHRATGDYAYVYIAERYHADAADPLVTGMSASPGGDTEEIETVCENLGLVNVEVMT 199
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV Y H+ + +V + E ++I + + EVI +L +G+ + LS
Sbjct: 200 EEDADVDEYTHDTDVRWEQVTLPDEVLDIRDALNEVITDRLEKLKQLGVTDTTN-PDLSQ 258
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA-----LITLYHIRRLL---SSHGIRPAY 402
DL R + +Q + + + Y G ++ L L+ S +R +
Sbjct: 259 KDLNKMRGQLKQMMDND-------QSDGYKGMSTHAEVMKLRRATELVETQSVESVRRYF 311
Query: 403 EMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462
E E + ++ + KV+ M+++ S PK SK +L + +
Sbjct: 312 ERQREAARSSGASKASQRMVADPKVREAMRKAESFDGLHPKFSKARILLAETLGIDGGE- 370
Query: 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG 522
R I+F+ R + ++ L+ D+ K F+GQ S G SQK QQ L++F+AG
Sbjct: 371 -RAILFTESRDTAEALVEFLSASFDVRK---FVGQGDKDGSDGMSQKQQQETLDEFKAGE 426
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ V+V+TS+ EEGLD+ EVDLV ++ + +R IQR GRTGR+ +G++
Sbjct: 427 FEVLVSTSVAEEGLDVPEVDLVCFYEPVPTAIRSIQRKGRTGRQAEGKV 475
>gi|448346947|ref|ZP_21535826.1| Hef nuclease [Natrinema altunense JCM 12890]
gi|445631284|gb|ELY84516.1| Hef nuclease [Natrinema altunense JCM 12890]
Length = 819
Score = 214 bits (545), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 141/464 (30%), Positives = 232/464 (50%), Gaps = 12/464 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V GK V AP++PLV Q
Sbjct: 24 RLYQLKLAGTAANHHTLVCLPTGLGKTTVSLLVTARRLEEVG-GKSVMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + +P E + TG +SP RA+ W+ V TPQV+E D+ + + L
Sbjct: 83 DFYREALQLPDEEIVVFTGDVSPDDRAATWEQATVVMATPQVIENDLVGSRISLADVTHL 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + + ++A+PG ++ I + +NL I +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHADAKRPLVTGMSASPGGDEEAILEVCENLGIDEVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV + H+ ++E +++ E +EI + + EVI+ +L +G+ + S
Sbjct: 203 EEDADVDEFTHDTEVEWERIDLPDEVLEIRDALNEVIKERLEKLKDLGVASSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
DL R + + N Q + E + ++ L L+ + + E +
Sbjct: 262 KDLNRMRAELQTLI--NNDQSEGFEGMSIHAEVMKLRQAVTLVETQSVEALRRYFERQRN 319
Query: 411 QGSFARFMSKNEDIR---KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
Q + ++ + +V+ M+ + PK SK +L + + + RVI+
Sbjct: 320 QARTSGASKASQRMVSDPRVREAMRNAERFDEIHPKYSKARMLLAETLGLEGGE--RVIV 377
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+ R + + + L+ D A F+GQ + S G +QK QQ VL++FRAG + V+V
Sbjct: 378 FTESRDTAEALTDFLSESFD---AKRFVGQGDREGSDGMTQKQQQEVLDEFRAGEFEVLV 434
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 435 STSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQTEGRV 478
>gi|448426589|ref|ZP_21583438.1| Hef nuclease [Halorubrum terrestre JCM 10247]
gi|445679469|gb|ELZ31936.1| Hef nuclease [Halorubrum terrestre JCM 10247]
Length = 825
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 137/462 (29%), Positives = 224/462 (48%), Gaps = 8/462 (1%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + A +TLV LPTGLGKT ++ +V GK +F AP++PLV Q
Sbjct: 21 RRYQLQLADAAADEHTLVCLPTGLGKTTVSLLVTAERLHQ-AGGKALFLAPTKPLVQQHA 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + +P + + TG + P RA+ W R+ TPQV+E D+ ++ + L
Sbjct: 80 DFYREALSVPDDEIVVFTGDVKPDDRAALWDDARIVIATPQVVENDLVGNRISLRDVAHL 139
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG + I+ + +NL + +E
Sbjct: 140 TFDECHRATGDYAYVYIAERYHTDAADPLVTGMSASPGGDTEEIETVCENLGLVNVEVMT 199
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV Y H+ ++ +V + E ++I + + EVI +L +G+ N LS
Sbjct: 200 EEDADVDEYTHDTDVQWEQVTLPDEVLDIRDALNEVITDRLEKLKQLGV-TNTTNPDLSQ 258
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFG-EVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
DL R + +Q + G A L + S +R +E E
Sbjct: 259 KDLNKMRGQLKQMMDNDQSDGYKGMSTHAEVMKLRRATELVETQSVESVRRYFERQREAA 318
Query: 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469
+ ++ + KV+ M+++ S PK SK +L + + R I+F+
Sbjct: 319 RSSGASKASQRMVADPKVREAMRKAESFDGLHPKFSKARILLAETLGINGGE--RAILFT 376
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
R + ++ L+ D+ K F+GQ + S G SQ QQ L++F+ G + V+V+T
Sbjct: 377 ESRDTAEALVEFLSASFDVRK---FVGQGDKEGSDGMSQTQQQETLDEFKNGEFEVLVST 433
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
S+ EEGLD+ EVDLV ++ + +R IQR GRTGR+ +G++
Sbjct: 434 SVAEEGLDVPEVDLVCFYEPVPTAIRSIQRKGRTGRQAEGKV 475
>gi|448508975|ref|ZP_21615651.1| Hef nuclease [Halorubrum distributum JCM 9100]
gi|448517616|ref|ZP_21617190.1| Hef nuclease [Halorubrum distributum JCM 10118]
gi|445696998|gb|ELZ49075.1| Hef nuclease [Halorubrum distributum JCM 9100]
gi|445705831|gb|ELZ57719.1| Hef nuclease [Halorubrum distributum JCM 10118]
Length = 825
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 137/462 (29%), Positives = 224/462 (48%), Gaps = 8/462 (1%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + A +TLV LPTGLGKT ++ +V GK +F AP++PLV Q
Sbjct: 21 RRYQLQLADAAADEHTLVCLPTGLGKTTVSLLVTAERLHQ-AGGKALFLAPTKPLVQQHA 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + +P + + TG + P RA+ W R+ TPQV+E D+ ++ + L
Sbjct: 80 DFYREALSVPDDEIVVFTGDVKPDDRAALWDDARIVIATPQVVENDLVGNRISLRDVTHL 139
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG + I+ + +NL + +E
Sbjct: 140 TFDECHRATGDYAYVYIAERYHADAADPLVTGMSASPGGDTEEIETVCENLGLVNVEVMT 199
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV Y H+ ++ +V + E ++I + + EVI +L +G+ N LS
Sbjct: 200 EEDADVDEYTHDTDVQWEQVTLPDEVLDIRDALNEVITDRLEKLKQLGV-TNTTNPDLSQ 258
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFG-EVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
DL R + +Q + G A L + S +R +E E
Sbjct: 259 KDLNKMRGQLKQMMDNDQSDGYKGMSTHAEVMKLRRATELVETQSVESVRRYFERQREAA 318
Query: 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469
+ ++ + KV+ M+++ S PK SK +L + + R I+F+
Sbjct: 319 RSSGASKASQRMVADPKVREAMRKAESFDGLHPKFSKARILLAETLGINGGE--RAILFT 376
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
R + ++ L+ D+ K F+GQ + S G SQ QQ L++F+ G + V+V+T
Sbjct: 377 ESRDTAEALVEFLSASFDVRK---FVGQGDKEGSDGMSQTQQQETLDEFKNGEFEVLVST 433
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
S+ EEGLD+ EVDLV ++ + +R IQR GRTGR+ +G++
Sbjct: 434 SVAEEGLDVPEVDLVCFYEPVPTAIRSIQRKGRTGRQAEGKV 475
>gi|429191672|ref|YP_007177350.1| ERCC4-like helicase [Natronobacterium gregoryi SP2]
gi|448325183|ref|ZP_21514580.1| Hef nuclease [Natronobacterium gregoryi SP2]
gi|429135890|gb|AFZ72901.1| ERCC4-like helicase [Natronobacterium gregoryi SP2]
gi|445616172|gb|ELY69802.1| Hef nuclease [Natronobacterium gregoryi SP2]
Length = 803
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 138/464 (29%), Positives = 230/464 (49%), Gaps = 12/464 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V GK + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAADHHTLVCLPTGLGKTTVSLLVTARRLEEVG-GKSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP E + TG +SP RA+ W+ V TPQV+E D+ + +
Sbjct: 83 DFYREALQIPDEQIVVFTGDVSPEDRAATWEEATVVMATPQVIENDLVGSRVSLADVTHC 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + Q + ++A+PG ++TI + +NL I +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHADAKQPLVTGMSASPGGDEETILEVCENLGIEEVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DVS + H+ +E +++ +E +EI + + +VI+ +L +G+ + Q
Sbjct: 203 EEDADVSEFTHDTDVEWERIDLPEEVLEIRDALNDVIKDRLEKLKEMGIADS--TQPDQS 260
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
LN+ Q N F E + ++ L L+ + + + +
Sbjct: 261 QKELNAMRAELQKLINNDQSEGF-EGMSIHAEVMKLRQAVTLVETQSVEAVRRYFDRQRN 319
Query: 411 QGSFARFMSKNEDIR---KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
Q + ++ + +V+ M++ PK K +L + +D + RVI+
Sbjct: 320 QARSSGASKASQRLVSDPRVREAMRKGEEFDQLHPKYRKTRMILAETLGLEDGE--RVIV 377
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+ R + + + L+ + +A F+GQ + S G +Q QQ VL+ FRAG + V++
Sbjct: 378 FTESRDTAEALTDFLS---ESFEAKRFVGQGDREGSDGMTQNEQQEVLDDFRAGEFEVLI 434
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 435 STSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 478
>gi|448330470|ref|ZP_21519751.1| Hef nuclease [Natrinema versiforme JCM 10478]
gi|445611517|gb|ELY65266.1| Hef nuclease [Natrinema versiforme JCM 10478]
Length = 815
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 141/464 (30%), Positives = 235/464 (50%), Gaps = 12/464 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V GK + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAANHHTLVCLPTGLGKTTVSLLVTARRLEEVG-GKSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + I E + TG +SP RA+ W++ V TPQV+E D+ + + +
Sbjct: 83 DFYREALQILDEEIVVFTGDVSPDDRAAMWESATVVMATPQVIENDLVGSRISLADVTHI 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + Q + ++A+PG ++ I + +NL + +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHADAKQPLVTGMSASPGGDEEAILEVCENLGLDEVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV + H+ +E +++ +E +EI + + EVI+ +L +G+ + S
Sbjct: 203 EEDADVDEFTHDTDVEWERIDLPEEVLEIRDALNEVIKERLEKLKELGVASSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL---SSHGIRPAYEMLEE 407
DL R + ++ N Q + E + ++ L L+ S +R +E
Sbjct: 262 KDLNRMRAELQEL--INNDQSEGFEGMSIHAEVMKLRQAVTLVETQSVEALRRYFERQRN 319
Query: 408 KLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
+ + ++ + +V+ M+++ S PK SK +L + + RVI+
Sbjct: 320 QARSSGASKASQRMVSDPRVREAMRKAESFDEIHPKYSKARMLLAETLGLE--GGDRVIV 377
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+ R + + + L+ D A F+GQ + S G +QK QQ VL++FRAG + V+V
Sbjct: 378 FTESRDTAEALTDFLSESFD---AKRFVGQGDREGSDGMTQKQQQEVLDEFRAGEFEVLV 434
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 435 STSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 478
>gi|448441595|ref|ZP_21589202.1| Hef nuclease [Halorubrum saccharovorum DSM 1137]
gi|445688631|gb|ELZ40882.1| Hef nuclease [Halorubrum saccharovorum DSM 1137]
Length = 815
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 136/462 (29%), Positives = 224/462 (48%), Gaps = 8/462 (1%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + A +TLV LPTGLGKT ++ +V GK +F AP++PLV Q
Sbjct: 21 RRYQLQLADAAADEHTLVCLPTGLGKTTVSLLVTAERLHE-AGGKALFLAPTKPLVQQHA 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + +P + + TG + P RA+ W R+ TPQV+E D+ ++ +
Sbjct: 80 DFYREALSVPDDEIVVFTGDVKPDDRAALWDDARIVIATPQVVENDLVGNRISLRDVTHC 139
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG + I+ + +NL + +E
Sbjct: 140 TFDECHRATGDYAYVYIAERYHADAADPLVTGMSASPGGDTEEIETVCENLGLVNVEVMT 199
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV Y H+ + +V + E ++I + + EVI +L ++G+ N LS
Sbjct: 200 EEDADVDEYTHDTDVRWEQVTLPDEVLDIRDALNEVITDRLEKLKSLGV-TNTTNPDLSQ 258
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFG-EVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
DL R + +Q + G A L + S +R +E E
Sbjct: 259 KDLNKMRGQLKQMMDNDQSAGYKGMSTHAEVMKLRRATELVETQSVESVRRYFERQREAA 318
Query: 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469
+ ++ + KV+ M+++ S PK SK +L + + + R I+F+
Sbjct: 319 RSSGASKASQRMVADPKVREAMRKAESFDGLHPKFSKARILLAETLGINEGE--RAILFT 376
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
R + ++ L+ D+ K F+GQ + S G SQ QQ L++F+ G + V+V+T
Sbjct: 377 ESRDTAEALVEFLSASFDVRK---FVGQGDKEGSDGMSQTQQQETLDEFKDGAFEVLVST 433
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
S+ EEGLD+ EVDLV ++ + +R IQR GRTGR+ +G++
Sbjct: 434 SVAEEGLDVPEVDLVCFYEPVPTAIRSIQRKGRTGRQAEGKV 475
>gi|448484173|ref|ZP_21605958.1| Hef nuclease [Halorubrum arcis JCM 13916]
gi|445820346|gb|EMA70172.1| Hef nuclease [Halorubrum arcis JCM 13916]
Length = 825
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 137/462 (29%), Positives = 224/462 (48%), Gaps = 8/462 (1%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + A +TLV LPTGLGKT ++ +V GK +F AP++PLV Q
Sbjct: 21 RRYQLQLADAAADEHTLVCLPTGLGKTTVSLLVTAERLHE-AGGKALFLAPTKPLVQQHA 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + +P + + TG + P RA+ W R+ TPQV+E D+ ++ + L
Sbjct: 80 DFYREALSVPDDEIVVFTGDVKPDDRAALWDDARIVIATPQVVENDLVGNRISLRDVTHL 139
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG + I+ + +NL + +E
Sbjct: 140 TFDECHRATGDYAYVYIAERYHADAADPLVTGMSASPGGDTEEIETVCENLGLVNVEVMT 199
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV Y H+ ++ +V + E ++I + + EVI +L +G+ N LS
Sbjct: 200 EEDADVDEYTHDTDVQWEQVTLPDEVLDIRDALNEVITDRLEKLKQLGV-TNTTNPDLSQ 258
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFG-EVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
DL R + +Q + G A L + S +R +E E
Sbjct: 259 KDLNKMRGQLKQMMDNDQSDGYKGMSTHAEVMKLRRATELVETQSVESVRRYFERQREAA 318
Query: 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469
+ ++ + KV+ M+++ S PK SK +L + + R I+F+
Sbjct: 319 RSSGASKASQRMVADPKVREAMRKAESFDGLHPKFSKARILLAETLGINGGE--RAILFT 376
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
R + ++ L+ D+ K F+GQ + S G SQ QQ L++F+ G + V+V+T
Sbjct: 377 ESRDTAEALVEFLSASFDVRK---FVGQGDKEGSDGMSQTQQQETLDEFKNGEFEVLVST 433
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
S+ EEGLD+ EVDLV ++ + +R IQR GRTGR+ +G++
Sbjct: 434 SVAEEGLDVPEVDLVCFYEPVPTAIRSIQRKGRTGRQAEGKV 475
>gi|384250622|gb|EIE24101.1| P-loop containing nucleoside triphosphate hydrolase protein,
partial [Coccomyxa subellipsoidea C-169]
Length = 204
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 134/204 (65%), Gaps = 2/204 (0%)
Query: 100 KTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159
K WIYP VP R YQ AI + AL NTLV LPTGLGKT IAAVV+YNFFRWFP+GK+VF
Sbjct: 1 KNWIYPEGVPERAYQVAIVEQALLKNTLVCLPTGLGKTFIAAVVMYNFFRWFPEGKVVFL 60
Query: 160 APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT--KRVFFVTPQVLEKDI 217
AP++PLV QQ++AC +G + +I + G ++ R W + KR+ F TPQ + D+
Sbjct: 61 APTKPLVHQQMDACQKFMGSSKGNSIVLDGGVNRENRIVQWDSPHKRIIFATPQTFKNDV 120
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
+G C ++ + C+V+DE HRA G I +L S + R+L L+ATPGSK++ +Q +
Sbjct: 121 CTGVCPLEKITCVVVDECHRAVGKNDAVAVIEKLRSEGCKFRVLGLSATPGSKREAVQEV 180
Query: 278 IDNLYISTLEYRNESDQDVSSYVH 301
+ NL IS +E+R E D DV Y H
Sbjct: 181 LQNLMISAIEFRGEEDADVVPYRH 204
>gi|257386865|ref|YP_003176638.1| Hef nuclease [Halomicrobium mukohataei DSM 12286]
gi|257169172|gb|ACV46931.1| helicase domain protein [Halomicrobium mukohataei DSM 12286]
Length = 851
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 138/484 (28%), Positives = 244/484 (50%), Gaps = 36/484 (7%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR---WFPDGKIVFA 159
+ P + R YQ + TAL +TLV LPTGLGKT ++ +V + W K +
Sbjct: 20 VTPGLLEQRRYQRELADTALADHTLVCLPTGLGKTTVSLLVTAERIQDAQW----KSLLL 75
Query: 160 APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS 219
AP++PLV Q E + +P + + TG++ P KR+ W+ RV TPQV+E D+
Sbjct: 76 APTKPLVQQHAEFYREALQVPDDEIVVFTGEVRPAKRSDLWEDARVVIATPQVVENDLVG 135
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAY---CTAIRELMSVPVQLRILALTATPGSKQQTIQH 276
+ + DE HRATG+YAY E S P+ + A++A+PG ++ I
Sbjct: 136 NRISLANVTHCTFDECHRATGDYAYNYIAERYHEDASDPL---VTAMSASPGGDEEEILT 192
Query: 277 IIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSA 336
+ +NL + + E D DV+ + H+ ++E +E+ + +EI + I EV+ ++L
Sbjct: 193 VCENLGLREVAVMTEDDADVAEHTHDTELEWKRIELPETVIEIRDAINEVVSDRLAQLKE 252
Query: 337 IGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS- 395
+G+ T P + ++ Q L ++ + + + L +R+L ++
Sbjct: 253 LGVTS-----TTQP----DVSEREIQKIQGKLSELMDNDQSEGYSGMSLLAEVRKLRTAV 303
Query: 396 --------HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKM 447
+R +E +E + ++ + V M+++ + PK +
Sbjct: 304 TYAETQSVEALRRYFERQKEAARSSGASKADQRLVSDPTVMEAMRKAENFTDLHPKFRRT 363
Query: 448 LEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQS 507
+L + ++ + RVI+F+ R + + + L+ D + +F+GQS + S+G +
Sbjct: 364 RMLLAETLGIENGE--RVIVFTESRDTAETLTDFLS---DHFETEKFVGQSDTEGSEGMT 418
Query: 508 QKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH 567
Q QQ L++FRAG + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+
Sbjct: 419 QTQQQETLDRFRAGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQT 478
Query: 568 DGRI 571
+GR+
Sbjct: 479 EGRV 482
>gi|448451900|ref|ZP_21593072.1| Hef nuclease [Halorubrum litoreum JCM 13561]
gi|445810116|gb|EMA60148.1| Hef nuclease [Halorubrum litoreum JCM 13561]
Length = 825
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 137/462 (29%), Positives = 224/462 (48%), Gaps = 8/462 (1%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + A +TLV LPTGLGKT ++ +V GK +F AP++PLV Q
Sbjct: 21 RRYQLQLADAAADEHTLVCLPTGLGKTTVSLLVTAERLHQ-AGGKALFLAPTKPLVQQHA 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + +P + + TG + P RA+ W R+ TPQV+E D+ ++ + L
Sbjct: 80 DFYREALSVPDDEIVVFTGDVKPDDRAALWDDARIVIATPQVVENDLVGNRISLRDVTHL 139
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG + I+ + +NL + +E
Sbjct: 140 TFDECHRATGDYAYVYIAERYHADAADPLVTGMSASPGGDTEEIETVCENLGLVNVEVMT 199
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV Y H+ ++ +V + E ++I + + EVI +L +G+ N LS
Sbjct: 200 EEDADVDEYTHDTDVQWEQVTLPDEVLDIRDALNEVITDRLEKLKQLGV-TNTTNPDLSQ 258
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFG-EVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
DL R + +Q + G A L + S +R +E E
Sbjct: 259 KDLNKMRGQLKQMMDNDQSDGYKGMSTHAEVMKLRRATELVETQSVESVRRYFERQREAA 318
Query: 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469
+ ++ + KV+ M+++ S PK SK +L + + R I+F+
Sbjct: 319 RSSGASKASQRMVADPKVREAMRKAESFDGLHPKFSKARILLAETLGINGGE--RAILFT 376
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
R + ++ L+ D+ K F+GQ + S G SQ QQ L++F+ G + V+V+T
Sbjct: 377 ESRDTAEALVEFLSASFDVRK---FVGQGDKEGSDGMSQTQQQETLDEFKNGEFEVLVST 433
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
S+ EEGLD+ EVDLV ++ + +R IQR GRTGR+ +G++
Sbjct: 434 SVAEEGLDVPEVDLVCFYEPVPTAIRSIQRKGRTGRQAEGKV 475
>gi|448307318|ref|ZP_21497216.1| Hef nuclease [Natronorubrum bangense JCM 10635]
gi|445595986|gb|ELY50083.1| Hef nuclease [Natronorubrum bangense JCM 10635]
Length = 810
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 142/464 (30%), Positives = 228/464 (49%), Gaps = 12/464 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V G + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAANDHTLVCLPTGLGKTTVSLLVTARRLDEVG-GTSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP E + TG +SP RA W V TPQV+E D+ + + +
Sbjct: 83 DFYREALQIPDEEIVVFTGDVSPDDRAELWTDATVVMATPQVIENDLVGSRISLADVSHI 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY Q + ++A+PG ++ I + +NL I +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHGDATQPLVTGMSASPGGDEEAILEVCENLGIQDVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DVS + HN +E +++ E +EI + + +VI+ +L +G+ + S
Sbjct: 203 EDDADVSKFTHNTDVEWERIDLPDEVLEIRDTLNDVIKNRLEKLKELGVASSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
DL R + + N Q K + + ++ L L+ + + + +
Sbjct: 262 KDLNRMRAELQGL--INNDQSKGFKGMSIHAEVMKLRQAVTLVETQSVEAVCRYFDRQRN 319
Query: 411 QGSFARFMSKNEDIR---KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
Q + ++ + +V+ M+++ S PK K +L + + + RVII
Sbjct: 320 QARSSGASKASQRMVSDPRVREAMRKAESFDQLHPKYRKTRMLLAETLGLEGGE--RVII 377
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+ R + + L+ D A F+GQ + S G +QK QQAVL+ FRAG + V+V
Sbjct: 378 FTESRDTAEALTEFLSESFD---AKRFVGQGDREGSDGMTQKQQQAVLDDFRAGEFEVLV 434
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 435 STSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 478
>gi|448544236|ref|ZP_21625549.1| Hef nuclease [Haloferax sp. ATCC BAA-646]
gi|448551248|ref|ZP_21629390.1| Hef nuclease [Haloferax sp. ATCC BAA-645]
gi|448558259|ref|ZP_21632933.1| Hef nuclease [Haloferax sp. ATCC BAA-644]
gi|445705740|gb|ELZ57633.1| Hef nuclease [Haloferax sp. ATCC BAA-646]
gi|445710804|gb|ELZ62602.1| Hef nuclease [Haloferax sp. ATCC BAA-645]
gi|445713147|gb|ELZ64926.1| Hef nuclease [Haloferax sp. ATCC BAA-644]
Length = 845
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/491 (28%), Positives = 234/491 (47%), Gaps = 50/491 (10%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + TA +TLV LPTGLGKT ++ +V G +F AP+
Sbjct: 15 LAPSFIERRLYQIRLAGTARDGHTLVCLPTGLGKTTVSLLVTAQRLHDVG-GTSLFLAPT 73
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + + +P + + TG + P RA W+ ++ TPQV+E D+
Sbjct: 74 KPLVQQHADFYREALTVPDDEIVVFTGDVRPDDRAELWQEAQIVIATPQVIENDLIGNRI 133
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + L DE HRA+G+YAY + + ++A+PG ++ I + +NL
Sbjct: 134 SLRDVTHLTFDECHRASGDYAYVYIAERYHADAEDPLVTGMSASPGGDEEAILEVCENLG 193
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I +E E D DVS Y H+ +E +++ E +EI + + EVI +L +G+ +
Sbjct: 194 IVDVEVMTEEDADVSEYTHDTDVEWNRIQLPDEILEIRDALNEVITDRLEKLKQLGVTK- 252
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR--RLLSSHG--- 397
+ P++ Q K + A L+ + +S+H
Sbjct: 253 --------------------STKPDISQKKLNRMRAELQRLMNADKSEGYKGMSTHAEVM 292
Query: 398 -IRPAYEMLEEKLKQGSFARFMSKNEDIR----------------KVKLLMQQSISHGAQ 440
+R A E++E + + S R+ + + KV+ M+++ S
Sbjct: 293 KLRRAVELVETQSVE-SVRRYFERQRNAARSSGASKASQRLVAEPKVREAMRKAESFDGL 351
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG 500
PK K +L + ++ + RVI+F+ R + + L+ + F+GQ
Sbjct: 352 HPKFRKTRILLAETLGIQNGE--RVIVFTESRDTAEALTEFLS---ESFSVRRFVGQGDR 406
Query: 501 KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+ S G +Q QQ L+KFR G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R IQR
Sbjct: 407 EGSDGMTQNEQQETLDKFRNGEFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRK 466
Query: 561 GRTGRKHDGRI 571
GRTGR+ DGR+
Sbjct: 467 GRTGRQADGRV 477
>gi|383620096|ref|ZP_09946502.1| Hef nuclease [Halobiforma lacisalsi AJ5]
gi|448696209|ref|ZP_21697770.1| Hef nuclease [Halobiforma lacisalsi AJ5]
gi|445783897|gb|EMA34721.1| Hef nuclease [Halobiforma lacisalsi AJ5]
Length = 828
Score = 213 bits (542), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 138/464 (29%), Positives = 232/464 (50%), Gaps = 12/464 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V + GK + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAADHHTLVCLPTGLGKTTVSLLVTARRLKEVG-GKSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ IP E + TG +SP RA+ W+ V TPQV+E D+ + +
Sbjct: 83 TFYREALQIPDEEIVVFTGDVSPDDRAATWEEATVVMATPQVIENDLVGSRISLADVTHC 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG ++ I + +NL I +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHADATDPLVTGMSASPGGDEEAILEVCENLGIEEVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DVS + H +E +++ +E +EI + + EVI+ +L +G+ + S
Sbjct: 203 EEDADVSEFTHETDVEWERIDLPEEVLEIRDALNEVIKERLEKLKELGVASSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
+L R + ++ N Q + E + ++ L L+ + + E +
Sbjct: 262 KELNAMRAELQKL--INNDQSEGFEGMSIHAEVMKLRQAVTLVETQSVEAVRRYFERQRN 319
Query: 411 QGSFARFMSKNEDIR---KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
Q + ++ + +V+ M+++ PK K +L + +D + RVI+
Sbjct: 320 QAQSSGASKASQRLVSDPRVREAMRKAEDFDQLHPKYRKTRMLLAETLGLEDGE--RVIV 377
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+ R + + + L+ + +A F+GQ + S G +Q QQ VL++FRAG + V+V
Sbjct: 378 FTESRDTAEALTDFLS---ESFEAKRFVGQGDREGSDGMTQTEQQEVLDEFRAGEFEVLV 434
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 435 STSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 478
>gi|448401335|ref|ZP_21571571.1| Hef nuclease [Haloterrigena limicola JCM 13563]
gi|445666598|gb|ELZ19257.1| Hef nuclease [Haloterrigena limicola JCM 13563]
Length = 810
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 139/464 (29%), Positives = 233/464 (50%), Gaps = 12/464 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V GK + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAANHHTLVCLPTGLGKTTVSLLVTARRLEEVG-GKSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP E + TG +SP RA W V TPQV+E D+ + + +
Sbjct: 83 DFYREALKIPDEEIVVFTGDVSPDDRAELWTEATVVMATPQVIENDLVGSRISLADVSHV 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG ++ I + +NL I+ +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHADARDPLVTGMSASPGGDEEAILEVCENLGIAEVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV + H ++E +++ +E +EI + + EVI +L +G+ ++ S
Sbjct: 203 EEDADVDEFTHETEVEWERIDLPEEVLEIRDTLNEVITGRLEKLKELGVAKSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
DL R + +Q N Q + E + ++ L L+ + + E +
Sbjct: 262 KDLNRMRAELQQLI--NNDQSEGFEGMSVHAEVMKLRQAVTLVETQSVEALRRYFERQRN 319
Query: 411 QGSFARFMSKNEDIR---KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
Q + ++ + +V+ M+++ + PK K +L + + + RVI+
Sbjct: 320 QARSSGASKASQRMVSDPRVREAMRKAENFDELHPKYRKARMLLAETLGLEGGE--RVIV 377
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+ R + + + L+ + +A F+GQ + S G +QK QQ VL++FRAG + V+V
Sbjct: 378 FTESRDTAEALTDFLS---ESFEAKRFVGQGDREGSDGMTQKQQQEVLDEFRAGEFEVLV 434
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 435 STSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 478
>gi|448337408|ref|ZP_21526486.1| Hef nuclease [Natrinema pallidum DSM 3751]
gi|445625583|gb|ELY78939.1| Hef nuclease [Natrinema pallidum DSM 3751]
Length = 815
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 138/464 (29%), Positives = 233/464 (50%), Gaps = 12/464 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V G+ + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAANHHTLVCLPTGLGKTTVSLLVTARRLEEVG-GRALMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP E + TG +SP RA+ W++ V TPQV+E D+ + + +
Sbjct: 83 DFYREALQIPDEEIVVFTGDVSPDDRAATWESATVVMATPQVIENDLVGSRISLADVTHV 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + + ++A+PG ++ I + +NL I +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHADAKRPLVTGMSASPGGDEEAILEVCENLGIDEVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV + H+ ++E +++ E +EI + + EVI +L +G+ + S
Sbjct: 203 EEDADVDEFTHDTEVEWERIDLPDEVLEIRDALHEVITERLEKLKELGVASSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
DL R + + N Q + E + ++ L L+ + + E +
Sbjct: 262 KDLNRMRAELQTLI--NNDQSEGFEGMSIHAEVMKLRQAVTLVETQSVEALRRYFERQRN 319
Query: 411 QGSFARFMSKNEDIR---KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
Q + ++ + +V+ M+++ S PK + +L + + + RVI+
Sbjct: 320 QARTSGASKASQRMVSDPRVREAMRKAESFDEIHPKYRRARVLLAETLGLEGGE--RVIV 377
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+ R + + + L+ D F+GQ + S G +QK QQAVL++FRAG + V+V
Sbjct: 378 FTESRDTAEALTDFLS---DSFDTKRFVGQGDREGSDGMTQKQQQAVLDEFRAGEFEVLV 434
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 435 STSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQTEGRV 478
>gi|448732248|ref|ZP_21714529.1| Hef nuclease [Halococcus salifodinae DSM 8989]
gi|445804821|gb|EMA55051.1| Hef nuclease [Halococcus salifodinae DSM 8989]
Length = 816
Score = 213 bits (541), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 141/469 (30%), Positives = 227/469 (48%), Gaps = 22/469 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + + A +TLV LPTGLGKT ++ +V N G + AP++PLV Q
Sbjct: 22 RQYQVELAREAARGHTLVCLPTGLGKTTVSLLVTANRLHEVG-GTALLLAPTKPLVTQHA 80
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
E + IP E + TG++ P R ++ RV TPQV+E D+ G + L
Sbjct: 81 EFYREALTIPDEEIVVFTGEVRPDDREELFERARVVIATPQVIENDLIGGRIDLDSTTHL 140
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRA+G YAY + + ++A+PG ++ I+ + +NL ++T+
Sbjct: 141 TFDECHRASGEYAYNYIAERYHADSEAPLVTGMSASPGGDEEAIRSVCENLGLATVTVMT 200
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV+ Y H +E V + E + I + + VI L +G+ ++ +S
Sbjct: 201 EDDADVAEYTHRTDVEWERVTLPDEILAIRDALVAVIEDRLEGLKELGVTRSTSAD-ISQ 259
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI--TLYHIRRLL------SSHGIRPAY 402
DL R + +Q I + E Y G I + +RR + S +R +
Sbjct: 260 RDLNRIRSELQQL-------IDNDQSEGYEGMSIHAEVMKLRRAVTLAETQSVESLRRYF 312
Query: 403 EMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462
E + ++ + KV+ M Q+ PK + +L +D +
Sbjct: 313 ERQRNAARSSGASKAAQRFASEAKVRDAMDQAERFDDLHPKFRRARILLAQTLGIEDGE- 371
Query: 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG 522
RVI+F+ R + + + L G+ +F+GQ + S G +QK QQ L++FRAG
Sbjct: 372 -RVIVFTESRDTAETLTDFL---GEHFSTRKFVGQGDKEGSDGMTQKEQQETLDEFRAGE 427
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 428 FEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQTEGRV 476
>gi|448417002|ref|ZP_21579105.1| Hef nuclease [Halosarcina pallida JCM 14848]
gi|445678685|gb|ELZ31173.1| Hef nuclease [Halosarcina pallida JCM 14848]
Length = 838
Score = 213 bits (541), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 143/489 (29%), Positives = 241/489 (49%), Gaps = 46/489 (9%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + A ++TLV LPTGLGKT ++ +V GK +F AP+
Sbjct: 15 LSPSFIERRLYQIRLAGAARDADTLVCLPTGLGKTTVSLLVTAERLHEIG-GKALFLAPT 73
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + + IP + + TG + P RA+ W+ R+ TPQV+E D+
Sbjct: 74 KPLVQQHADFYREALTIPDDEIVVFTGDVRPDDRAALWEDARIVIATPQVVENDLIGNRI 133
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + L DE HR TG+YAY + + ++A+PG +++I + +NL
Sbjct: 134 SLRDVTHLTFDECHRGTGDYAYVYIAERYHADAEHPLVTGMSASPGGDEESILEVCENLG 193
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
+S +E E D DV Y ++ ++E +++ E + I + + +VI+ +L ++G+
Sbjct: 194 LSEVEVMTEEDADVDEYTYDTEVEWERIDLPDEILAIRDALNDVIKDRLEKLKSLGVTN- 252
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG----I 398
T SP D+ + +A L I + E Y G +S+H +
Sbjct: 253 ----TTSP-DVSQKQLNGMRAELQKL--INNDKSEGYKG-----------MSTHAEVMKL 294
Query: 399 RPAYEMLEEKLKQGSFARFMSKNEDIR----------------KVKLLMQQSISHGAQSP 442
R A E++E + + S R+ + + KV+ M+++ S P
Sbjct: 295 RRAVELVETQSVE-SVRRYFERQRNAARSSGASKASQRLVSEPKVREAMRKAESFDELHP 353
Query: 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKA 502
K S+ +L + + RVI+F+ R + + + L+ D+ + F+GQ
Sbjct: 354 KFSRTRILLAQTLGIEGGQ--RVIVFTESRDTAEALTDFLSASFDVRR---FVGQGDKDG 408
Query: 503 SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
S G +QK QQ L +FR G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R IQR GR
Sbjct: 409 SDGMTQKEQQETLNEFRNGEFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRKGR 468
Query: 563 TGRKHDGRI 571
TGR+ +GR+
Sbjct: 469 TGRQAEGRV 477
>gi|448721282|ref|ZP_21703850.1| Hef nuclease [Halobiforma nitratireducens JCM 10879]
gi|445778400|gb|EMA29349.1| Hef nuclease [Halobiforma nitratireducens JCM 10879]
Length = 808
Score = 213 bits (541), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 139/464 (29%), Positives = 231/464 (49%), Gaps = 12/464 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V GK + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAANHHTLVCLPTGLGKTTVSLLVTARRLEEVG-GKSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP E + TG +SP RA W+ + TPQV+E D+ + +
Sbjct: 83 DFYREALQIPDEEIVVFTGDVSPEDRAETWEEATIVMATPQVIENDLVGSRVSLSGVTHC 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + Q + ++A+PG ++ I + +NL I +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHADAKQPLVTGMSASPGGDEEAILEVCENLGIEEVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DVS + H IE +++ + +EI + + EVI+ +L +G+ + S
Sbjct: 203 EEDADVSEFTHETDIEWERIDLPEAVLEIRDALNEVIKERLEKLKEMGIADSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
+L R + ++ N Q + E + ++ L L+ + + E +
Sbjct: 262 KELNAMRAELQKL--INNDQSEGFEGMSIHAEVMKLRQAVTLVETQSVEAVRRYFERQRN 319
Query: 411 QGSFARFMSKNEDIR---KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
Q + ++ + +V+ M+++ S PK K +L + +D + RVI+
Sbjct: 320 QAQSSGASKASQRLVSDPRVREAMRKAESFDQLHPKYRKARMLLAETLGLEDGE--RVIV 377
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+ R + + + L+ + +A F+GQ + S G +Q QQ VLE FRAG + V+V
Sbjct: 378 FTESRDTAEALTDFLS---ESFEAKRFVGQGDREGSDGMTQNEQQEVLEDFRAGEFEVLV 434
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +G++
Sbjct: 435 STSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGQV 478
>gi|448354594|ref|ZP_21543350.1| Hef nuclease [Natrialba hulunbeirensis JCM 10989]
gi|445637482|gb|ELY90632.1| Hef nuclease [Natrialba hulunbeirensis JCM 10989]
Length = 833
Score = 212 bits (540), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 140/463 (30%), Positives = 228/463 (49%), Gaps = 10/463 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V G + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAANGHTLVCLPTGLGKTTVSLLVTARRLDEVG-GTSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP + + TG +SP RA W+ V TPQV+E D+ + + L
Sbjct: 83 DFYREALQIPDDEIVVFTGDVSPDDRAELWEEATVVMATPQVIENDLVGSRISLADVTHL 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG ++ I + +NL + +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHTDAADPLVTGMSASPGGDEEAILEVCENLGLQEVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV + H+ ++E +++ E +EI + + EVI +L +G+ ++ S
Sbjct: 203 EEDADVDEFTHDTEVEWERIDLPDEVLEIRDALNEVITDRLEKLKELGVAKSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
DL R + +Q + + K V A L + S +R ++ +
Sbjct: 262 KDLNRMRAELQQLINNDQSEGFKGMSVHAEVMKLRQAVTLVETQSVEALRRYFDRQRNQA 321
Query: 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469
+ ++ + +V+ M+++ S PK K +L + + + RVI+F+
Sbjct: 322 RSSGASKASQRMVSDPRVREAMRKAESFDELHPKYRKTRMLLAETLGLEGGE--RVIVFT 379
Query: 470 NFRGSVRDIMNAL-ATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVA 528
RD AL A + D A F+GQ + S G +QK QQ VL++FRA + V+V+
Sbjct: 380 E----SRDTAEALTAFLSDSFDAKRFVGQGDREGSDGMTQKQQQEVLDEFRAAEFEVLVS 435
Query: 529 TSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 436 TSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 478
>gi|159905661|ref|YP_001549323.1| Hef nuclease [Methanococcus maripaludis C6]
gi|159887154|gb|ABX02091.1| ERCC4 domain protein [Methanococcus maripaludis C6]
Length = 751
Score = 212 bits (540), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 161/474 (33%), Positives = 244/474 (51%), Gaps = 30/474 (6%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P ++ R YQ + +AL NTL L TGLGKT IAA+ I DGK++ AP
Sbjct: 7 LIKPESIEARIYQQLVVASALKQNTLCVLGTGLGKTAIAALTIAGILSK-QDGKVLIIAP 65
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
SRPLV Q ++ + + I E + + G+ISP KR + W++ ++F TPQV E DI S
Sbjct: 66 SRPLVDQHFKSMNQFLNIDSEKIVILNGKISPKKREAMWESGKIFIATPQVAENDIISKM 125
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
L+ DEAH TGN++Y + + +L LTA+PGS + I I NL
Sbjct: 126 LKPSQFSLLIADEAHHTTGNHSYTFVANKFKK---KSHVLGLTASPGSNIERIIEICGNL 182
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
I +E + E D DV+ YV K+ VE+ +E EIN + + RL L +
Sbjct: 183 GIEHVEIKTEEDPDVAPYVAKVKMRPKRVELPEE-FEINLTLLK--NALKDRLR--DLKE 237
Query: 342 NRDYQTL--SPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIR 399
NR T+ + +LL K IK+ E+ + L H +L + G
Sbjct: 238 NRVIHTINVNKSELLGLNKKIMTMD----DNIKY-EMLRISSEAVKLEHAIEMLETQGRS 292
Query: 400 PAYEMLEEKLKQGSFARFMSKNED--IRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKT 457
++ L Q + + N+ I+ VK L + I H PK KMLE+L + K
Sbjct: 293 TFLNYYQKLLTQNTKSAKEITNDPRFIQVVKNLNELDIEH----PKYEKMLEILKEILK- 347
Query: 458 KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEK 517
++ ++IIF+ +R +V+ I++ L+ G ++A F+GQS+ K KG SQ Q +E+
Sbjct: 348 ---ENEKIIIFAQYRDTVQKIVDLLSENG--IEAIMFVGQSN-KDGKGMSQTEQAKAIER 401
Query: 518 FRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
F++ NV+V+TS+ EEG+DI V+ V+ ++ S +RMIQR GR R G++
Sbjct: 402 FKS-DVNVLVSTSVSEEGIDISGVNYVLFYEPVPSEIRMIQRRGRAARGEGGQV 454
>gi|433438864|ref|ZP_20408396.1| Hef nuclease, partial [Haloferax sp. BAB2207]
gi|432189197|gb|ELK46322.1| Hef nuclease, partial [Haloferax sp. BAB2207]
Length = 504
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 141/491 (28%), Positives = 235/491 (47%), Gaps = 50/491 (10%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + TA +TLV LPTGLGKT ++ +V GK +F AP+
Sbjct: 15 LAPSFIERRLYQIRLAGTARDGHTLVCLPTGLGKTTVSLLVTAQRLHDV-GGKSLFLAPT 73
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + + +P + + TG + P RA W+ ++ TPQV+E D+
Sbjct: 74 KPLVQQHADFYREALTVPDDEIVVFTGDVRPDDRAELWQEAQIVIATPQVIENDLIGNRI 133
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + L DE HRA+G+YAY + + ++A+PG ++ I + +NL
Sbjct: 134 SLRDVTHLTFDECHRASGDYAYVYIAERYHADAENPLVTGMSASPGGDEEAILEVCENLG 193
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I +E E D DVS Y H+ +E +++ E +EI + + EVI +L +G+ +
Sbjct: 194 IVDVEVMTEEDADVSEYTHDTDVEWNRIQLPDEILEIRDALNEVITDRLEKLKQLGVTK- 252
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR--RLLSSHG--- 397
+ P++ Q K + A L+ + +S+H
Sbjct: 253 --------------------STKPDISQKKLNRMRAELQRLMNADKSEGYKGMSTHAEVM 292
Query: 398 -IRPAYEMLEEKLKQGSFARFMSKNEDIR----------------KVKLLMQQSISHGAQ 440
+R A E++E + + S R+ + + KV+ M+++ S
Sbjct: 293 KLRRAVELVETQSVE-SVRRYFERQRNAARSSGASKASQRLVAEPKVREAMRKAESFDGL 351
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG 500
PK K +L + ++ + RVI+F+ R + + L+ + F+GQ
Sbjct: 352 HPKFRKTRILLAETLGIQNGE--RVIVFTESRDTAEALTEFLS---ESFSVRRFVGQGDR 406
Query: 501 KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+ S G +Q QQ L+KFR G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R IQR
Sbjct: 407 EGSDGMTQNEQQETLDKFRNGEFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRK 466
Query: 561 GRTGRKHDGRI 571
GRTGR+ DGR+
Sbjct: 467 GRTGRQADGRV 477
>gi|345004287|ref|YP_004807140.1| ERCC4 domain-containing protein [halophilic archaeon DL31]
gi|344319913|gb|AEN04767.1| ERCC4 domain protein [halophilic archaeon DL31]
Length = 790
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 143/483 (29%), Positives = 233/483 (48%), Gaps = 50/483 (10%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA ++TLV LPTGLGKT ++ +V + G + AP++PLV Q
Sbjct: 23 RLYQLQLAGTAQEADTLVCLPTGLGKTTVSLLVTAERLQSVG-GNALLLAPTKPLVQQHA 81
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
E + IP E + TG++SP RA+ W + + TPQV+E D+ + + +
Sbjct: 82 EFYREALQIPDEEIVVFTGEVSPEDRAALWDSATIVIATPQVVENDLVGNRISLADVTHI 141
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG ++ I + +NL ++ +E
Sbjct: 142 TFDECHRATGDYAYVYIAERYHADAADPLVTGMSASPGGDEEEILEVCENLGLNEVEVMT 201
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV+ + ++ +++ V++ E +EI + I EVI L +G+ +
Sbjct: 202 EDDADVAEFTYDTEVQWERVDLPDEILEIRDLINEVITDRLEDLKELGVTK--------- 252
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALIT--LYHIRRLLSSHG----IRPAYEM 404
A P+L Q K + A LI + +S+H +R A E+
Sbjct: 253 ------------ATSPDLSQKKLNGMRAELQKLINNDQSEGYQGMSTHAEIMKLRRAVEL 300
Query: 405 LEEKLKQGSFARFMSKNEDIR---------------KVKLLMQQSISHGAQSPKLSKMLE 449
+E + + F + ED R +V+ M+++ S PK S+
Sbjct: 301 VETQSVESVRRYFERQREDARSSGASKASQRMVSDPRVRRAMRKAESFDGLHPKFSQARI 360
Query: 450 VLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT-IGDLVKATEFIGQSSGKASKGQSQ 508
+L D + RVI+F+ RD AL +G + +F+GQ + S G +Q
Sbjct: 361 LLAQTLGIGDGE--RVILFTE----SRDTAEALTEFLGQSFETRKFVGQGDKQGSDGMTQ 414
Query: 509 KVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD 568
QQ L+ FR G + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+
Sbjct: 415 TQQQERLDAFRDGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQTA 474
Query: 569 GRI 571
G++
Sbjct: 475 GKV 477
>gi|448357031|ref|ZP_21545738.1| Hef nuclease [Natrialba chahannaoensis JCM 10990]
gi|445650204|gb|ELZ03130.1| Hef nuclease [Natrialba chahannaoensis JCM 10990]
Length = 835
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 139/463 (30%), Positives = 228/463 (49%), Gaps = 10/463 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V G + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAANGHTLVCLPTGLGKTTVSLLVTARRLDEVG-GTSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP + + TG +SP RA W+ + TPQV+E D+ + + L
Sbjct: 83 DFYREALKIPDDEIVVFTGDVSPDDRAELWEEATIVMATPQVIENDLVGSRISLADVTHL 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG ++ I + +NL + +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHADATDPLVTGMSASPGGDEEAILEVCENLGLQEVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV + H+ ++E +++ E +EI + + EVI +L +G+ ++ S
Sbjct: 203 EEDADVDEFTHDTEVEWERIDLPDEVLEIRDALNEVITDRLEKLKELGVAKSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
DL R + +Q + + K V A L + S +R ++ +
Sbjct: 262 KDLNRMRAELQQLINNDQSEGFKGMSVHAEVMKLRQAVTLVETQSVEALRRYFDRQRNQA 321
Query: 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469
+ ++ + +V+ M+++ S PK K +L + + + RVI+F+
Sbjct: 322 RSSGASKASQRMVSDPRVREAMRKAESFDELHPKYRKTRMLLAETLGLEGGE--RVIVFT 379
Query: 470 NFRGSVRDIMNAL-ATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVA 528
RD AL A + D A F+GQ + S G +QK QQ VL++FRA + V+V+
Sbjct: 380 E----SRDTAEALTAFLSDSFDAKRFVGQGDREGSDGMTQKQQQEVLDEFRAAEFEVLVS 435
Query: 529 TSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 436 TSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 478
>gi|134045229|ref|YP_001096715.1| Hef nuclease [Methanococcus maripaludis C5]
gi|132662854|gb|ABO34500.1| ERCC4 domain protein [Methanococcus maripaludis C5]
Length = 749
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 244/479 (50%), Gaps = 40/479 (8%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P ++ R YQ + +AL NTL L TGLGKT IAA+ I DGK++ AP
Sbjct: 7 LIKPESIEARIYQQLVVASALKQNTLCVLGTGLGKTAIAALTIAGILSK-QDGKVLIIAP 65
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
SRPLV Q ++ + + I E + + G+ISP KR + W++ ++F TPQV E DI S
Sbjct: 66 SRPLVDQHFKSMNQFLNIDSEKIVILNGKISPKKRETMWESGKIFIATPQVAENDIISKI 125
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
L+ DEAH TGN++Y + + +L LTA+PGS + I I NL
Sbjct: 126 LKPSQFSLLIADEAHHTTGNHSYTFVANKFKK---KSHVLGLTASPGSNIERIIEICGNL 182
Query: 282 YISTLEYRNESDQDVSSYVHN-----RKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSA 336
I +E + E D DVS YV R++EL E E G + N + + +R
Sbjct: 183 GIEHVEIKTEEDPDVSPYVAKVKMRPRRVELPE-EFGVNLTLLKNALKDRLR-------- 233
Query: 337 IGLLQNRDYQTL--SPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLS 394
L +NR T+ + +LL + IK+ E+ + L H +L
Sbjct: 234 -DLKENRVIHTINVNKSELLGLNKRIMSMD----DNIKY-EMLRISSEAVKLEHAIEMLE 287
Query: 395 SHGIRPAYEMLEEKLKQGSFARFMSKNED--IRKVKLLMQQSISHGAQSPKLSKMLEVLV 452
+ G ++ L Q + + N+ I+ VK L + I H PK KMLE++
Sbjct: 288 TQGRSTFLNYYQKLLTQNTKSAKEITNDPRFIQVVKNLNELDIEH----PKYEKMLEIVS 343
Query: 453 DHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQ 512
+ K ++ ++IIF+ +R +V+ I++ L+ + ++A F+GQS+ K KG SQK Q
Sbjct: 344 EILK----ENEKIIIFAQYRDTVQKIVDLLSE--NEIEAIMFVGQSN-KDGKGMSQKEQA 396
Query: 513 AVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+EKF+ NV+V+TS+ EEG+DI V+ V+ ++ S +RMIQR GR R G++
Sbjct: 397 KAIEKFKNEA-NVLVSTSVSEEGIDISSVNYVLFYEPVPSEIRMIQRRGRAARGEGGQV 454
>gi|336252885|ref|YP_004595992.1| helicase domain-containing protein [Halopiger xanaduensis SH-6]
gi|335336874|gb|AEH36113.1| helicase domain-containing protein [Halopiger xanaduensis SH-6]
Length = 831
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 138/464 (29%), Positives = 230/464 (49%), Gaps = 12/464 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V GK + AP++PLV Q
Sbjct: 24 RLYQLRLAGTAANHHTLVCLPTGLGKTTVSLLVTARRLEEVG-GKSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP E + TG +SP RA W+ V TPQV+E D+ + + +
Sbjct: 83 DFYREALQIPDEEIVVFTGDVSPDDRAETWQEATVVMATPQVIENDLVGSRISLAEVTHI 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG ++ I + +NL + +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHEDAKKPLVTGMSASPGGDEEAILEVCENLGLEEVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DVS + H+ +E +++ E +EI + + EVI+ +L +G+ + S
Sbjct: 203 EEDADVSEFTHDTDVEWERIDLPDEVLEIRDTLNEVIKERLEKLKELGIASSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
DL R + +Q N Q + E + ++ L L+ + + + +
Sbjct: 262 KDLNKMRAELQQLI--NNDQSEGFEGMSIHAEVMKLRQAVTLVETQSVEAVRRYFDRQRN 319
Query: 411 QGSFARFMSKNEDIR---KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
Q + ++ + +V+ M+++ PK K +L + + + RVI+
Sbjct: 320 QARSSGASKASQRMVSDPRVREAMRKAEDFDEIHPKYRKTRMLLAETLGLEGGE--RVIV 377
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+ R + + + L+ D A F+GQ + S G +Q QQ VL++FRAG + V+V
Sbjct: 378 FTESRDTAEALTDFLSESFD---AKRFVGQGDREGSDGMTQTEQQEVLDEFRAGEFEVLV 434
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 435 STSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 478
>gi|284166979|ref|YP_003405258.1| ERCC4 domain-containing protein [Haloterrigena turkmenica DSM 5511]
gi|284016634|gb|ADB62585.1| ERCC4 domain protein [Haloterrigena turkmenica DSM 5511]
Length = 820
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 136/464 (29%), Positives = 231/464 (49%), Gaps = 12/464 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V GK + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAANDHTLVCLPTGLGKTTVSLLVTARRLEEVG-GKSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP E + TG +SP RA+ W+ V TPQV+E D+ + + +
Sbjct: 83 DFYREALQIPDEEIVVFTGDVSPDDRAAMWEEATVVMATPQVIENDLVGSRISLADVTHI 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG ++ I + +NL + +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHADARDPLVTGMSASPGGDEEAILEVCENLGLREVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV + H+ +E +++ +E +EI + + EVI+ +L +G+ + S
Sbjct: 203 EEDADVDEFTHDTDVEWERIDLPEEVIEIRDALNEVIKERLEKLKELGVASSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
DL R + ++ N Q + E + ++ L L+ + + + +
Sbjct: 262 KDLNRMRAELQKLI--NNDQSEGFEGMSVHAEIMKLRQAVTLVETQSVEAVCRYFDRQRN 319
Query: 411 QGSFARFMSKNEDIR---KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
Q + ++ + +V+ M+++ S PK K +L + + + RVI+
Sbjct: 320 QARSSGASKASQRLVSDPRVREAMRKAESFDQLHPKYRKTRMLLAETLGLEGGE--RVIV 377
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+ R + + + L+ D A F+GQ + S G +Q QQ VL++FR G + V+V
Sbjct: 378 FTESRDTAEALTDFLSESFD---AKRFVGQGDREGSDGMTQTEQQEVLDQFRGGEFEVLV 434
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 435 STSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 478
>gi|289581647|ref|YP_003480113.1| helicase [Natrialba magadii ATCC 43099]
gi|448282943|ref|ZP_21474225.1| Hef nuclease [Natrialba magadii ATCC 43099]
gi|289531200|gb|ADD05551.1| helicase domain protein [Natrialba magadii ATCC 43099]
gi|445575558|gb|ELY30033.1| Hef nuclease [Natrialba magadii ATCC 43099]
Length = 829
Score = 211 bits (538), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 139/463 (30%), Positives = 228/463 (49%), Gaps = 10/463 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V G + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAANGHTLVCLPTGLGKTTVSLLVTARRLDEVG-GTSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP E + TG +SP RA W+ + TPQV+E D+ + + L
Sbjct: 83 DFYREALQIPDEEIVVFTGDVSPDNRAELWEEATIVMATPQVIENDLVGSRISLADVTHL 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG ++ I + +NL + +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHADATDPLVTGMSASPGGDEEAILEVCENLGLQEVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV + H+ ++E +++ + +EI + + EVI +L +G+ ++ S
Sbjct: 203 EEDADVDEFTHDTEVEWERIDLPDDVLEIRDALNEVITDRLEKLKELGVAKSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
DL R + +Q + + K V A L + S +R ++ +
Sbjct: 262 KDLNRMRAELQQLINNDQSEGFKGMSVHAEVMKLRQAVTLVETQSVEALRRYFDRQRNQA 321
Query: 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469
+ ++ + +V+ M+++ S PK K +L + + + RVI+F+
Sbjct: 322 RSSGASKASQRMVSDPRVREAMRKAESFDELHPKYRKTRMLLAETLGLEGGE--RVIVFT 379
Query: 470 NFRGSVRDIMNAL-ATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVA 528
RD AL A + D A F+GQ + S G +QK QQ VL++FRA + V+V+
Sbjct: 380 E----SRDTAEALTAFLSDSFDAKRFVGQGDREGSDGMTQKQQQEVLDEFRAAEFEVLVS 435
Query: 529 TSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 436 TSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 478
>gi|448381161|ref|ZP_21561428.1| Hef nuclease [Haloterrigena thermotolerans DSM 11522]
gi|445663513|gb|ELZ16261.1| Hef nuclease [Haloterrigena thermotolerans DSM 11522]
Length = 815
Score = 211 bits (538), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 137/464 (29%), Positives = 232/464 (50%), Gaps = 12/464 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V GK + AP++PLV Q
Sbjct: 26 RLYQLKLAGTAANHHTLVCLPTGLGKTTVSLLVTARRLEEVG-GKALMLAPTKPLVQQHA 84
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP + + TG +SP RA W++ V TPQV+E D+ + + +
Sbjct: 85 DFYREALQIPDKEIVVFTGDVSPDDRAEMWESATVVMATPQVIENDLVGSRISLADVTHV 144
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + + ++A+PG ++ I + +NL I +E
Sbjct: 145 TFDECHRATGDYAYNYIAERYHADAKRPLVTGMSASPGGDEEAILEVCENLGIDEVEVMT 204
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV + H +E +++ ++ +EI + + EVI +L +G+ + S
Sbjct: 205 EEDADVDEFTHETDVEWERIDLPEDVLEIRDALNEVITERLEKLKELGVASSTQPDQ-SQ 263
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
DL R + ++ N Q + E + ++ L L+ + + + +
Sbjct: 264 KDLNRMRAELQELI--NNDQSEGFEGMSIHAEVMKLRQAVTLVETQSVEAVRRYFDRQRN 321
Query: 411 QGSFARFMSKNEDIR---KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
Q + ++ + +V+ M+++ S PK K +L + + + RVI+
Sbjct: 322 QARSSGASKASQRMVSDPRVREAMRKAESFDEIHPKYRKTRMLLAETLGLEGGE--RVIV 379
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+ R + + + L+ D A F+GQ + S G +Q QQAVL++FRAG + V+V
Sbjct: 380 FTESRDTAEALTDFLS---DSFDAKRFVGQGDREGSDGMTQTEQQAVLDEFRAGEFEVLV 436
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 437 STSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 480
>gi|448302430|ref|ZP_21492412.1| Hef nuclease [Natronorubrum tibetense GA33]
gi|445581659|gb|ELY36011.1| Hef nuclease [Natronorubrum tibetense GA33]
Length = 818
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 141/470 (30%), Positives = 230/470 (48%), Gaps = 24/470 (5%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V GK + AP++PLV Q
Sbjct: 26 RLYQLKLAGTAANGHTLVCLPTGLGKTTVSLLVTARRLDEVG-GKALMLAPTKPLVQQHA 84
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + +P + + TG +SP RA W+ V TPQV+E D+ + + L
Sbjct: 85 DFYREALQVPDDEIVVFTGDVSPDDRAETWEQATVVMATPQVIENDLVGSRISLSDVTHL 144
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + Q + ++A+PG ++ I + NL I +E
Sbjct: 145 TFDECHRATGDYAYNYIAERYHADASQPLVTGMSASPGGDEEAILEVCANLGIQDVEVMT 204
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DVS + H+ +E +++ +E +EI + + EVI +L +G+ ++ S
Sbjct: 205 EEDADVSEFTHDTDVEWERIDLPEEVIEIRDALNEVITDRLEKLKELGVAKSTQPDQ-SQ 263
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA-----LITLYHIRRLLSSHGIRPAYEML 405
DL R + +Q I + E + G ++ L L+ + +
Sbjct: 264 KDLNRMRAELQQL-------INNDQSEGFKGMSVHAEVMKLRQAVTLVETQSVEAVCRYF 316
Query: 406 EEKLKQGSFARFMSKNEDIR---KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462
+ + Q + ++ + +V+ M+++ S PK K +L + + +
Sbjct: 317 DRQRNQARSSGASKASQRMVSDPRVREAMRKAESFDQLHPKYRKTRMLLAETLGLEGGE- 375
Query: 463 SRVIIFSNFRGSVRDIMNALAT-IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG 521
RVI+F+ RD AL + D A F+GQ + S G +Q QQ VL++FRA
Sbjct: 376 -RVIVFTES----RDTAEALTEFLNDSFDAKRFVGQGDREGSDGMTQNQQQEVLDQFRAA 430
Query: 522 GYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 431 EFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 480
>gi|41615176|ref|NP_963674.1| Hef nuclease [Nanoarchaeum equitans Kin4-M]
gi|40068900|gb|AAR39235.1| NEQ387 [Nanoarchaeum equitans Kin4-M]
Length = 667
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 159/510 (31%), Positives = 251/510 (49%), Gaps = 50/510 (9%)
Query: 130 LPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTG 189
+PTGLGKT+IA ++I F + +PD KI+F AP++PLV Q +E I + ++G
Sbjct: 1 MPTGLGKTVIALMLIEYFKQKYPDKKILFLAPTKPLVNQHVEFLRKYSDIDPTKIVGISG 60
Query: 190 QISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIR 249
I KR + V TPQ ++ D+ + + ++ DEAHRA GNY+Y R
Sbjct: 61 DIPKEKRVKLYNAD-VIVATPQTIKNDLANNLIDLNKFSLIIFDEAHRAVGNYSYTYIAR 119
Query: 250 ELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIE 309
+ RI+ LTA+PGS ++ I+ II+NL I +EYRNE DV YV + I+ I
Sbjct: 120 NFNN-----RIVGLTASPGSDEEKIKEIIENLKIERIEYRNEDSSDVRPYVKKKVIKYIG 174
Query: 310 VEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLP 369
V + +E + ++ I E I +L +G+L+ + + + LL K +QA +
Sbjct: 175 VALDKEILTASSLIQEAIEIRKKKLEELGILKRK----IKDIALLMEELKKKQAYSLD-E 229
Query: 370 QIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKN--EDIR-- 425
++K + ++ L+H + L + R + E + + KN ED+R
Sbjct: 230 RVKDAIIIG--SEILILFHALKTLQTQTYRAFLKFCENLFENAQ--KLSEKNVAEDVRLK 285
Query: 426 KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI 485
K L ++ + G + PK++ +LE K K ++I+F+ +V I L
Sbjct: 286 KAYLYVKDLVKQGKEHPKINALLE------IIKKNKDKKIIVFAQLTDTVMQITELLNK- 338
Query: 486 GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
+ +KA F G+ K +QK Q L+KFRA YNV+VA+S+ EEGLDI +VDLVI
Sbjct: 339 -NNIKAVAFTGK------KLMTQKKQIETLDKFRANIYNVLVASSVAEEGLDIPKVDLVI 391
Query: 546 CFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTP 605
++ S +R IQR GRTGR + G + ++ K D+ A+
Sbjct: 392 FYEPIPSAIRAIQRKGRTGRLNYGEVIILY-----------------SKNTLDEKALWAS 434
Query: 606 IFKEKLTAAETDLIAKYFHPTSDSTWRPSL 635
I KEK + ++K P + T L
Sbjct: 435 IRKEKKMYEILEKLSKEVKPKKEQTLNEVL 464
>gi|448389152|ref|ZP_21565564.1| Hef nuclease [Haloterrigena salina JCM 13891]
gi|445669056|gb|ELZ21671.1| Hef nuclease [Haloterrigena salina JCM 13891]
Length = 820
Score = 210 bits (535), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 136/464 (29%), Positives = 231/464 (49%), Gaps = 12/464 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V GK + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAANHHTLVCLPTGLGKTTVSLLVTARRLEEVG-GKSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP + TG +SP RA+ W+ V TPQV+E D+ + + +
Sbjct: 83 DFYREALQIPDGEIVVFTGDVSPDDRAAMWEEATVVMATPQVIENDLVGSRISLSDVTHI 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG ++ I + +NL + +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHADAQDPLVTGMSASPGGDEEAILEVCENLGLREVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV + H+ +E +++ +E +EI + + EVI+ +L +G+ + S
Sbjct: 203 EEDADVDEFTHDTDVEWERIDLPEEVIEIRDGLNEVIKERLEKLKELGVASSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
DL R + ++ N Q + E + ++ L L+ + + + +
Sbjct: 262 KDLNRMRAELQKLI--NNDQSEGFEGMSIHAEIMKLRQAVTLVETQSVEAVCRYFDRQRN 319
Query: 411 QGSFARFMSKNEDIR---KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
Q + ++ + +V+ M+++ S PK K +L + + + RVI+
Sbjct: 320 QARSSGASKASQRLVSDPRVREAMRKAESFDQLHPKYRKTRMLLAETLGLEGGE--RVIV 377
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+ R + + + L+ D A F+GQ + S G +QK QQ VL++FR G + V+V
Sbjct: 378 FTESRDTAEALTDFLSESFD---AKRFVGQGDREGSDGMTQKEQQDVLDQFRGGEFEVLV 434
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 435 STSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 478
>gi|354609912|ref|ZP_09027868.1| ERCC4 domain protein [Halobacterium sp. DL1]
gi|353194732|gb|EHB60234.1| ERCC4 domain protein [Halobacterium sp. DL1]
Length = 815
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 137/480 (28%), Positives = 235/480 (48%), Gaps = 27/480 (5%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD--GKIVFAA 160
+ P + R YQ + A +TLV LPTGLGKT ++ +V +R D K + A
Sbjct: 12 LEPDVIEARQYQLQLAAAARQDHTLVCLPTGLGKTTVSLLV--TAYRLADDIGAKSLLLA 69
Query: 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
P++PLV Q + IP + + TG+ P R W + RV TPQV+E D+ G
Sbjct: 70 PTKPLVEQHATFYREALTIPDDEIVVFTGETRPDDREEQWSSARVVVATPQVVENDLVGG 129
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDN 280
++ +V DE HRATG+YAY + + ++A+PG ++ I+ + +N
Sbjct: 130 RISLRDVVHCTFDECHRATGDYAYTYIAERYHADAADPLVTGMSASPGGNEEDIRTVCEN 189
Query: 281 LYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLL 340
L ++ +E E D DV + ++ ++ +E+ ++ +E+ + I EVI +L +G+
Sbjct: 190 LGVANVEVMTEDDADVGEHTYDTDVQWERIELPEQVIEVRDAINEVIEDRLEKLRDLGVT 249
Query: 341 QNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI--TLYHIRRLL----- 393
+ +S DL R + ++ I + E Y G + + +RR +
Sbjct: 250 RAS-SPDVSQKDLNKIRARLQEL-------IDNDDSEGYQGMSVHAEVMKLRRAVELVET 301
Query: 394 -SSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLV 452
S +R +E + ++ + KVK M+++ PK + +L
Sbjct: 302 QSVESVRRYFERQRNAARSSGASKASQRLVSEPKVKEAMRKADEFDGLHPKFRRARMLLA 361
Query: 453 DHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT-IGDLVKATEFIGQSSGKASKGQSQKVQ 511
+ ++ + RVI+F+ R D AL +G F+GQ S G +QK Q
Sbjct: 362 ETLGIEEGE--RVIVFTESR----DTAEALTEFLGQHFDTRRFVGQGDADGSDGMTQKEQ 415
Query: 512 QAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ L++FR+G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R +QR GRTGR+ +G++
Sbjct: 416 RETLDEFRSGEFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSVQRKGRTGRQTEGKV 475
>gi|399576326|ref|ZP_10770083.1| ercc4-like helicase [Halogranum salarium B-1]
gi|399239037|gb|EJN59964.1| ercc4-like helicase [Halogranum salarium B-1]
Length = 829
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 138/475 (29%), Positives = 238/475 (50%), Gaps = 18/475 (3%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + A +TLV LPTGLGKT ++ ++ GK +F AP+
Sbjct: 15 LAPTFIERRLYQIRLAGAARDDHTLVCLPTGLGKTTVSLLLTAERLHEVG-GKSLFLAPT 73
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + + +P E + TG++ P RA W++ ++ TPQV+E D+
Sbjct: 74 KPLVQQHADFYREALQLPDEDIVVFTGEVRPDDRAELWESAKIVIATPQVVENDLVGNRI 133
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
++ + L DE HR TG+YAY + + ++A+PG +++I + +NL
Sbjct: 134 SLRDVTHLTFDECHRGTGDYAYVYIAERYHADAADPLVTGMSASPGGDEESILEVCENLG 193
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
++ + E D DV + ++ ++ ++++ +E +EI + + EVI +L +G+
Sbjct: 194 LTEVAVMTEDDADVGEHTYDTEVRWEKIQLPEEILEIRDALNEVIVDRLEQLKELGV--- 250
Query: 343 RDYQTLSPVDL----LNS-RDKFRQAPPPNLPQIKFG-EVEAYFGALITLYHIRRLLSSH 396
T SP DL LN+ R + R+ + + G V A L + S
Sbjct: 251 --SGTTSP-DLSQKKLNAMRGQLRKMMDNDQSKGYKGMSVHAEVMKLRRAVELVETQSVE 307
Query: 397 GIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFK 456
+R +E + ++ + KV+ M+++ S+ A PK SK +L +
Sbjct: 308 SVRRYFERQRNAARSSGASKASQRLVSEPKVREAMRKAESYDALHPKFSKTRILLAETLG 367
Query: 457 TKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLE 516
D + RVI+F+ R + + + L+ F+GQ + + S G SQK QQ L+
Sbjct: 368 INDGE--RVIVFTESRDTAEALTDFLSQS---FSTRRFVGQGNKEGSDGMSQKEQQETLD 422
Query: 517 KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
FR G + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +G++
Sbjct: 423 AFRNGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQTEGKV 477
>gi|448304069|ref|ZP_21494014.1| Hef nuclease [Natronorubrum sulfidifaciens JCM 14089]
gi|445592156|gb|ELY46348.1| Hef nuclease [Natronorubrum sulfidifaciens JCM 14089]
Length = 811
Score = 209 bits (533), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 227/462 (49%), Gaps = 8/462 (1%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V GK + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAANDHTLVCLPTGLGKTTVSLLVTARRLDEVG-GKSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + + IP E + TG +SP R W V TPQV+E D+ + + +
Sbjct: 83 DFYRDALRIPDEEIVVFTGDVSPDDRGELWTDATVVMATPQVIENDLVGSRLSLADVSHI 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG ++ I + +NL + +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHADADDPLVTGMSASPGGDEEAILEVCENLGLREVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DVS + HN +E +++ +E +EI + + EVI +L +G+ + S
Sbjct: 203 EDDADVSKFTHNTDVEWERIDLPEEVLEIRDTLNEVITDRLEKLKELGVASSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
DL R + + + + K + A L + S +R ++ +
Sbjct: 262 KDLNRMRAELQGLINNDQSEGFKGMSIHAEVMKLRQAVTLVETQSVEAVRRYFDRQRNQA 321
Query: 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469
+ ++ + +V+ M+++ S PK K +L + + + RVIIF+
Sbjct: 322 RSSGASKASQRMVSDPRVREAMRKAESFDQLHPKYRKTRMLLAETLGLEGGE--RVIIFT 379
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
R + + L+ D A F+GQ + S G +QK QQAVL++FRA + V+V+T
Sbjct: 380 ESRDTAEALTEFLSESFD---AKRFVGQGDREGSDGMTQKEQQAVLDEFRAAEFEVLVST 436
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
S+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 437 SVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 478
>gi|76800822|ref|YP_325830.1| Hef nuclease [Natronomonas pharaonis DSM 2160]
gi|76556687|emb|CAI48259.1| ATP-dependent RNA helicase/nuclease Hef [Natronomonas pharaonis DSM
2160]
Length = 845
Score = 209 bits (533), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 137/485 (28%), Positives = 231/485 (47%), Gaps = 54/485 (11%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + +TA +TLV LPTGLGKT ++ +V GK + AP++PLV Q
Sbjct: 24 RRYQLKLAETAAEDHTLVCLPTGLGKTAVSLLVTAERL-ADRGGKALLLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + + + TG + P RA+ W+ V TPQV+E D+ ++ + L
Sbjct: 83 AFYREALTLADDEVVVFTGAVRPDDRAALWEDASVVCATPQVVENDLVGNRVSLRPVTHL 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
+DE HRATG+YAY + + A++A+PG ++ I + DNL + +
Sbjct: 143 TVDECHRATGDYAYNYIAERYHEDAAKPLVTAMSASPGGDKEEILTVCDNLGLREVAVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E+D DV Y H+ +E VE+ + ++I + + EVI ++L +G+ + D
Sbjct: 203 EADADVDEYTHHTDVEWERVELPEAVIDIRDNLNEVITERLTKLKELGVTTSTD------ 256
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI-----TLYHIRRLLSSHG----IRPA 401
PN+ Q + + A LI + Y + +S+H +R A
Sbjct: 257 ---------------PNMSQSQLNAIRAKLQELINNDDSSGY---KGMSAHAEIMKLRRA 298
Query: 402 YEMLEEKLKQGSFARFMSKNEDIR---------------KVKLLMQQSISHGAQSPKLSK 446
E++E + + F + ED + +V+ M+++ + PK +
Sbjct: 299 VELVETQSVESVRRYFERQREDAKSSGASKASQRFVSEPRVQAAMRKATAFDDLHPKFRR 358
Query: 447 MLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQ 506
+L + + RVI+F+ R + + A +G+ + F+GQ S G
Sbjct: 359 TRILLAQTLGIEGGE--RVIVFTESRDTAESLT---AFLGEHFETRRFVGQGDKDGSDGM 413
Query: 507 SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
+Q Q+ L+ FR+G + V+V+TS+ EEGLD+ +VDLV+ ++ +R IQR GRTGR
Sbjct: 414 TQTEQKETLDAFRSGEFEVLVSTSVAEEGLDVPDVDLVLFYEPVPKGIRSIQRKGRTGRA 473
Query: 567 HDGRI 571
DGR+
Sbjct: 474 SDGRV 478
>gi|307352953|ref|YP_003894004.1| helicase domain-containing protein [Methanoplanus petrolearius DSM
11571]
gi|307156186|gb|ADN35566.1| helicase domain protein [Methanoplanus petrolearius DSM 11571]
Length = 766
Score = 209 bits (533), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 162/494 (32%), Positives = 250/494 (50%), Gaps = 50/494 (10%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
I P ++ R YQF+I A NT+V LPTGLGKT +A + + G+ + AP+
Sbjct: 9 IRPESIEERQYQFSIALRAQDGNTMVVLPTGLGKTAVATIAAAARMKS-TGGRFLMMAPT 67
Query: 163 RPLVMQQIEACHNIVGIPQEWTID----MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
+PLV Q ++ P++ TG+ ++R W+ KR F TPQ+++ DI
Sbjct: 68 KPLVDQHLKTFERDFIDPEDEAFSGFALFTGETKTSERQRLWREKRFIFATPQIIKNDII 127
Query: 219 SGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHII 278
+G +K + LV+DE HRA GNYAY +E M ILA+TA+PGS++ + +
Sbjct: 128 AGRYSLKDVSLLVVDECHRAVGNYAYVFIAQEYMKTSRHPLILAMTASPGSQEDKVAEVC 187
Query: 279 DNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM--GQEAVE------INNRI-----WE 325
NL I +E R E D DV Y+H R ++ ++V + G + V + NR+
Sbjct: 188 SNLDIQIIETRTEEDPDVRPYIHQRDLKYVDVPLPPGIKVVTDGLKEILQNRLDTLTKMS 247
Query: 326 VIRPYTSRLS--AIGLLQNRDYQTLSPVDLLNSRDKFR-QAPPPNLPQIK----FGEVEA 378
+ P RL+ A+ L+ + T+ N+RD ++ + L +IK GE +
Sbjct: 248 FVVPKAERLTMKALNGLKGQINATMRT----NTRDAYQAMSIHAELMKIKHAITLGESQ- 302
Query: 379 YFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGS-FARFMSKNEDIRKVKLLMQQSISH 437
G+++ ++ +LL S G P+ ++L F + + K ++ + I+
Sbjct: 303 --GSMVLKNYLFKLL-SEGTSPSGTKAGKRLAADPLFGEIIDEASSWEK-EIHPKPEIA- 357
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ 497
+ + K LE D SR+IIF+N+R SV + L G + +FIGQ
Sbjct: 358 ---AEIVEKQLEEFPD---------SRIIIFANYRDSVNLLDEYLKGRG--IDCKKFIGQ 403
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
+S + KG SQK Q L FR G + V++ATS+GEEGLD+ DLVI ++A S +R I
Sbjct: 404 ASRDSEKGLSQKKQIETLTGFRNGEFRVLIATSVGEEGLDVPSTDLVIFYEAVPSEIRSI 463
Query: 558 QRMGRTGRKHDGRI 571
QR GRTGR G I
Sbjct: 464 QRKGRTGRHGSGSI 477
>gi|448312646|ref|ZP_21502386.1| Hef nuclease [Natronolimnobius innermongolicus JCM 12255]
gi|445600842|gb|ELY54842.1| Hef nuclease [Natronolimnobius innermongolicus JCM 12255]
Length = 820
Score = 209 bits (532), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 136/462 (29%), Positives = 226/462 (48%), Gaps = 8/462 (1%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V G + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAANDHTLVCLPTGLGKTTVSLLVTARRLEEVG-GTSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP E + TG +SP RA+ W+ V TPQV+E D+ + + L
Sbjct: 83 DFYREALQIPDEEIVVFTGDVSPDDRAAMWEDATVVMATPQVIENDLVGSRISLSDVTHL 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + ++A+PG ++ I + +NL + +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHPDARDPLVTGMSASPGGDEEAILEVCENLGLREVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV + H+ +E +++ +E +EI + + +VI+ +L +G+ + S
Sbjct: 203 EEDADVDQFTHDTDVEWERIDLPEEVIEIRDALNDVIKDRLEKLKELGVASSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQ-IKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
DL R + ++ + + K V A L + S +R ++ +
Sbjct: 262 KDLNRMRAELQKLINNDQSEGFKGMSVHAEVMKLRQAVTLVETQSVEAVRRYFDRQRNQA 321
Query: 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469
+ ++ + +V+ M+++ PK K +L + + + RVI+F+
Sbjct: 322 RSSGASKASQRLVSDPRVREAMRKAERFDQLHPKYRKTRMLLAETLGLEGGE--RVIVFT 379
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
R + + + L+ D A F+GQ + S G +QK QQ VL FRAG + V+V+T
Sbjct: 380 ESRDTAEALTDFLS---DSFDAKRFVGQGDREGSDGMTQKQQQEVLNDFRAGEFEVLVST 436
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
S+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 437 SVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 478
>gi|448364130|ref|ZP_21552724.1| Hef nuclease [Natrialba asiatica DSM 12278]
gi|445645018|gb|ELY98025.1| Hef nuclease [Natrialba asiatica DSM 12278]
Length = 834
Score = 209 bits (532), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 142/481 (29%), Positives = 232/481 (48%), Gaps = 29/481 (6%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V G + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAANDHTLVCLPTGLGKTTVSLLVTARRLEEVG-GTALMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIP-----------------QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
E + IP E + TG +SP RA W V TPQV+
Sbjct: 83 EFYREALQIPDTDEQSSSSDQNAERSENEEIVVFTGDVSPDDRAELWTDATVVMATPQVI 142
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
E D+ G + + L DE HRATG+YAY + ++A+PG ++
Sbjct: 143 ENDLVGGRISLSDVTHLTFDECHRATGDYAYNYIAERYHEDARDPLVTGMSASPGGDEEA 202
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
I + +NL + +E E D DV + H+ ++E +++ + +EI + + EVI+ +
Sbjct: 203 ILEVCENLGLQEVEVMTEEDADVDEFTHDTEVEWERIDLPDDVLEIRDALNEVIKDRLEK 262
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L +G+ ++ S DL R + +Q N Q + E + ++ L L+
Sbjct: 263 LKELGVAKSTQPDQ-SQKDLNKMRAELQQLI--NNDQSEGFEGMSIHAEVMKLRQAVTLV 319
Query: 394 ---SSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEV 450
S +R ++ + + ++ + +V+ M+++ S PK + +
Sbjct: 320 ETQSVEALRRYFDRQRNQARSSGASKASQRMVSDPRVREAMRKAESFSELHPKYRRTRML 379
Query: 451 LVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKV 510
L + +D + RVI+F+ R + + LA D A F+GQ + S G +QK
Sbjct: 380 LAETLGIEDGE--RVIVFTESRDTAEALTEFLAGSCD---AKRFVGQGDREGSDGMTQKQ 434
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
QQ VL++FRAG + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR
Sbjct: 435 QQEVLDEFRAGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGR 494
Query: 571 I 571
+
Sbjct: 495 V 495
>gi|433592991|ref|YP_007282487.1| ERCC4-like helicase [Natrinema pellirubrum DSM 15624]
gi|448335437|ref|ZP_21524582.1| Hef nuclease [Natrinema pellirubrum DSM 15624]
gi|433307771|gb|AGB33583.1| ERCC4-like helicase [Natrinema pellirubrum DSM 15624]
gi|445616961|gb|ELY70569.1| Hef nuclease [Natrinema pellirubrum DSM 15624]
Length = 813
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 136/464 (29%), Positives = 230/464 (49%), Gaps = 12/464 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V GK + AP++PLV Q
Sbjct: 26 RLYQLKLAGTAANHHTLVCLPTGLGKTTVSLLVTARRLEEVG-GKSLMLAPTKPLVQQHA 84
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + IP E + TG +SP RA W++ + TPQV+E D+ + + +
Sbjct: 85 DFYREALQIPDEEIVVFTGDVSPDDRAEMWESATIVMATPQVIENDLVGSRISLADVTHV 144
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + + ++A+PG ++ I + +NL I +E
Sbjct: 145 TFDECHRATGDYAYNYIAERYHADAKRPLVTGMSASPGGDEEAILEVCENLGIDEVEVMT 204
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV + H +E +++ + +EI + + EVI +L +G+ + S
Sbjct: 205 EEDADVDEFTHETDVEWERIDLPEAVLEIRDALNEVITERLEKLKELGVASSTQPDQ-SQ 263
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
DL R + ++ N Q + E + ++ L L+ + + + +
Sbjct: 264 KDLNRMRAELQELI--NNDQSEGFEGMSIHAEVMKLRQAVTLVETQSVEAVRRYFDRQRN 321
Query: 411 QGSFARFMSKNEDIR---KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
Q + ++ + +V+ M+++ S PK K +L + + + RVI+
Sbjct: 322 QARSSGASKASQRMVSDPRVREAMRKAESFDEIHPKYRKTRMLLAETLGLEGGE--RVIV 379
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+ R + + + L+ D A F+GQ + S G +Q QQ VL++FRAG + V+V
Sbjct: 380 FTESRDTAEALTDFLS---DSFDAKRFVGQGDREGSDGMTQTEQQDVLDEFRAGEFEVLV 436
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 437 STSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 480
>gi|45358958|ref|NP_988515.1| Hef nuclease [Methanococcus maripaludis S2]
gi|45047824|emb|CAF30951.1| Helix-hairpin-helix motif:DEAD/DEAH box helicase:Helicase,
C-terminal:Helix-hairpin-helix DNA-binding, class
1:ERCC4 domain [Methanococcus maripaludis S2]
Length = 752
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 161/474 (33%), Positives = 244/474 (51%), Gaps = 30/474 (6%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P + R YQ + +AL NTL L TGLGKT IAA+ I +GK++ AP
Sbjct: 7 LIKPETIEARIYQQLVVASALKQNTLCVLGTGLGKTAIAALTIAGILSK-RNGKVLIIAP 65
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
SRPLV Q ++ + + I E + + G+ISP KR + W++ ++F TPQV E DI S
Sbjct: 66 SRPLVDQHFKSMNQFLNIDSEKIVILNGKISPKKREAMWESGKIFIATPQVAENDIISKI 125
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
L+ DEAH TGN++Y + + +L LTA+PGS I I NL
Sbjct: 126 LKPSQFSLLIADEAHHTTGNHSYTFVANKFKK---KSHVLGLTASPGSNIDRIFEICGNL 182
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
I +E + E D DVS YV K+ VE+ +E E+N + + RL L +
Sbjct: 183 GIEHVEIKTEEDPDVSPYVAKVKMRPKRVELPEE-FEVNLNLLK--NALKDRLR--DLKE 237
Query: 342 NRDYQ--TLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIR 399
NR T++ +LL K A N IK+ E+ + L H +L + G
Sbjct: 238 NRVIHSITVNKSELLGLNKKI-MAMDDN---IKY-EMLRISSEAVKLEHAIEMLETQGKS 292
Query: 400 PAYEMLEEKLKQGSFARFMSKNED--IRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKT 457
++ L Q + + N+ I+ VK L + I H PK KMLE++ + K
Sbjct: 293 TFLNYYQKLLTQNTKSAKEITNDPRFIQAVKNLNELDIEH----PKYEKMLEIVKEILK- 347
Query: 458 KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEK 517
++ +++IF+ +R +V+ I++ L+ + ++A F+GQS+ K KG SQK Q +EK
Sbjct: 348 ---ENEKIVIFAQYRDTVQKIVDLLSE--NEIEAIMFVGQSN-KDGKGMSQKEQAKAIEK 401
Query: 518 FRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
F+ NV+V+TS+ EEG+DI V+ V+ ++ S +RMIQR GR R G++
Sbjct: 402 FKNEA-NVLVSTSVSEEGIDISSVNYVLFYEPVPSEIRMIQRRGRAARGEGGQV 454
>gi|312137159|ref|YP_004004496.1| dead/deah box helicase domain-containing protein [Methanothermus
fervidus DSM 2088]
gi|311224878|gb|ADP77734.1| DEAD/DEAH box helicase domain protein [Methanothermus fervidus DSM
2088]
Length = 730
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 136/451 (30%), Positives = 237/451 (52%), Gaps = 16/451 (3%)
Query: 111 RDYQFAITKTALFSN--TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
R YQ I L +N T++ PT LGKT+IA +V + + +++ APS+PL +Q
Sbjct: 22 RLYQKIIAAKILKNNKNTMIVAPTALGKTVIAILVAAERLHKYKNSRVLILAPSKPLALQ 81
Query: 169 QIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLV 228
+ + +P T +TG I P KR W+ RV TPQ +E D+ G +K +
Sbjct: 82 HHQKFKEFMIVP---TSCLTGDIPPKKRVELWENSRVICATPQTIESDLIRGNYSLKDVS 138
Query: 229 CLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEY 288
+V DE HRA G+Y+Y + + I+ LTA+PGS ++ I + NL I +
Sbjct: 139 LVVFDECHRAVGSYSYVYLASKYLEDAENPLIIGLTASPGSDKEKINEVCKNLSIDDVII 198
Query: 289 RNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTL 348
+ E D+DVS Y + + + ++V++ E + I + + ++ L + +++N + +
Sbjct: 199 KTEKDKDVSPYFNPIETKWVKVKLDDELIRIKKLMEKSLKRRLKLLKRMDIIKN---ENV 255
Query: 349 SPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEE- 407
+ DLL++R + ++ + + + + + A I + H LL + I Y+ LE
Sbjct: 256 TKKDLLDARKELKKMLTIDSSRKLYTAI-SLLVASINIEHALELLETQTINALYKYLERL 314
Query: 408 KLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
K KQ +R + K+ RK L+++ + PKL++++++L K+ +VI+
Sbjct: 315 KKKQTKASRSLVKDIYFRKAISLVERRFMRNQEHPKLNELIKILKKEIANKN----KVIV 370
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+ FR SV I + + + +F GQ KG SQK Q+ +++KF+AG Y+V++
Sbjct: 371 FTQFRDSVEQIHKKCQE--NNISSVKFYGQRGRDGEKGLSQKEQKEIIKKFKAGVYDVLI 428
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558
+TS+ EEG+DI VD VI ++ S +RMIQ
Sbjct: 429 STSVAEEGIDIPAVDTVILYEPVPSEIRMIQ 459
>gi|340624705|ref|YP_004743158.1| Hef nuclease [Methanococcus maripaludis X1]
gi|339904973|gb|AEK20415.1| Hef nuclease [Methanococcus maripaludis X1]
Length = 755
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 161/474 (33%), Positives = 244/474 (51%), Gaps = 30/474 (6%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P + R YQ + +AL NTL L TGLGKT IAA+ I +GK++ AP
Sbjct: 7 LIKPETIEARIYQQLVVASALKQNTLCVLGTGLGKTAIAALTIAGILSK-RNGKVLIIAP 65
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
SRPLV Q ++ + + I E + + G+ISP KR + W++ ++F TPQV E DI S
Sbjct: 66 SRPLVDQHFKSMNQFLNIDSEKIVILNGKISPKKREAMWESGKIFIATPQVAENDIISKI 125
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
L+ DEAH TGN++Y + + +L LTA+PGS I I NL
Sbjct: 126 LKPSQFSLLIADEAHHTTGNHSYTFVANKFKK---KSHVLGLTASPGSNIDRIFEICGNL 182
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
I +E + E D DV+ YV K+ VE+ +E E+N + + RL L +
Sbjct: 183 GIEHVEIKTEEDPDVAPYVAKVKMRPKRVELPEE-FEVNLTLLK--NALKDRLR--DLKE 237
Query: 342 NRDYQ--TLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIR 399
NR T++ +LL K A N IK+ E+ + L H +L + G
Sbjct: 238 NRVIHSITVNKSELLGLNKKI-MAMDDN---IKY-EMLRISSEAVKLEHAIEMLETQGRS 292
Query: 400 PAYEMLEEKLKQGSFARFMSKNED--IRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKT 457
++ L Q + + N+ I+ VK L + I H PK KMLE++ + K
Sbjct: 293 TFLNYYQKLLTQNTKSAKEITNDPRFIQAVKNLNELDIEH----PKYEKMLEIVKEILK- 347
Query: 458 KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEK 517
++ ++IIF+ +R +V+ I++ L+ + ++A F+GQS+ K KG SQK Q +EK
Sbjct: 348 ---ENEKIIIFAQYRDTVQKIVDLLSE--NEIEAIMFVGQSN-KDGKGMSQKEQAKAIEK 401
Query: 518 FRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
F+ NV+V+TS+ EEG+DI V+ V+ ++ S +RMIQR GR R G++
Sbjct: 402 FKNEA-NVLVSTSVSEEGIDISSVNYVLFYEPVPSEIRMIQRRGRAARGEGGQV 454
>gi|452206230|ref|YP_007486352.1| ATP-dependent RNA helicase/nuclease Hef [Natronomonas moolapensis
8.8.11]
gi|452082330|emb|CCQ35585.1| ATP-dependent RNA helicase/nuclease Hef [Natronomonas moolapensis
8.8.11]
Length = 835
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 137/469 (29%), Positives = 229/469 (48%), Gaps = 22/469 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R+YQ ++ +TA +TLV LPTGLGKT ++ +V G + AP++PLV Q
Sbjct: 24 RNYQLSLAETAASDHTLVCLPTGLGKTAVSLLVTAERLAEHG-GTSLLLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + + + TG + P RA+ W++ RV TPQV+E D+ + + L
Sbjct: 83 AFYREALSVDDDDIVVFTGAVRPDDRAALWESTRVVCATPQVIENDLVGNRISLSDVTHL 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
+DE HRATGNYAY + + ++A+PG ++ I + DNL + +
Sbjct: 143 TVDECHRATGNYAYNYIADRYHADAETPLVTGMSASPGGDKEEILTVCDNLGLCDVAVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV+++ H+ +E +E+ +EI + + +VI +L +G+ + D ++S
Sbjct: 203 EDDADVAAHTHDTDVEWERIELPDTVIEIRDALNDVISERLHKLKGLGVTNSTD-PSMSQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFG--ALITLYHIRRLL------SSHGIRPAY 402
L R K ++ I E Y G A + +RR + S +R +
Sbjct: 262 SQLNAIRAKLQEL-------INNDSSEGYKGMSAHAEIMKLRRAVELVETQSVESLRRYF 314
Query: 403 EMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462
E E K ++ + +VK M+++ + PK + +L +D +
Sbjct: 315 ERQREDAKSSGASKASQRFVSDPRVKEAMRRAEAFDDLHPKFRRARILLAQTLGIEDGE- 373
Query: 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG 522
RVI+F+ R + + A +G+ F+GQ + S G +Q Q+ L+ FR G
Sbjct: 374 -RVIVFTESRDTAETLT---AFLGEHFSTRRFVGQGDKEGSDGMTQTEQKDTLDAFRNGE 429
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ V+V+TS+ EEGLD+ +VDLV+ ++ +R IQR GRTGR DGR+
Sbjct: 430 FEVLVSTSVAEEGLDVPDVDLVLFYEPVPKGIRSIQRKGRTGRASDGRV 478
>gi|448726759|ref|ZP_21709151.1| Hef nuclease [Halococcus morrhuae DSM 1307]
gi|445793805|gb|EMA44376.1| Hef nuclease [Halococcus morrhuae DSM 1307]
Length = 806
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/478 (29%), Positives = 231/478 (48%), Gaps = 22/478 (4%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
+ P + R YQ + A +TLV LPTGLGKT ++ +V G + AP
Sbjct: 13 LVEPGVLERRRYQAELADQAASGHTLVCLPTGLGKTTVSLLVTAARLHE-QGGTSLLLAP 71
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
++PLV Q E + + IP + + TG++SP R ++ R+ TPQV+E D+ G
Sbjct: 72 TKPLVTQHAEFYRDALTIPDDEIVVFTGEVSPDDREELFERARIVIATPQVVENDLIGGR 131
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+ L DE HRA+GNYAY + + + ++A+PG ++ IQ + +NL
Sbjct: 132 IDLATTTHLTFDECHRASGNYAYNYIAERYHADAEKPLVTGMSASPGGDEEAIQSVCENL 191
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
++++ E D DV+ Y H+ +E V + E + I + + VI +L +G+
Sbjct: 192 GLASVAVMTEEDADVADYTHDTSVEWERVTLPDEILAIRDSLVAVIEERLEKLKELGVSH 251
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI--TLYHIRRLL------ 393
+S DL R + +Q I + E Y G I + +RR +
Sbjct: 252 TTSAD-ISQRDLNRIRSELQQL-------IDNDQSEGYEGMSIHAEVMKLRRAVTLAETQ 303
Query: 394 SSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVD 453
S +R +E + ++ + KV+ M+Q+ ++ PK + +L
Sbjct: 304 SVESLRRYFERQRNAARSSGASKASQRLVSEAKVREAMEQAETYDDLHPKFRRARILLAQ 363
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
+ + RVI+F+ R + + L G + +F+GQ + S G +Q QQ
Sbjct: 364 CLGIEGGE--RVIVFTESRDTAETLTEFL---GAHFETRKFVGQGDKEGSDGMTQNEQQE 418
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
L+ FRAG + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 419 TLDAFRAGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQTEGRV 476
>gi|397772195|ref|YP_006539741.1| helicase domain protein [Natrinema sp. J7-2]
gi|397681288|gb|AFO55665.1| helicase domain protein [Natrinema sp. J7-2]
Length = 857
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 141/465 (30%), Positives = 235/465 (50%), Gaps = 14/465 (3%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V GK + AP++PLV Q
Sbjct: 62 RLYQLKLAGTAANHHTLVCLPTGLGKTTVSLLVTARRLEEVG-GKSLMLAPTKPLVQQHA 120
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + +P E + TG +SP RA+ W++ V TPQV+E D+ + + +
Sbjct: 121 DFYREALQLPDEEIVVFTGDVSPDDRAATWESATVVMATPQVIENDLVGSRISLADVTHV 180
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRIL-ALTATPGSKQQTIQHIIDNLYISTLEYR 289
DE HRATG+YAY I E V + ++ ++A+PG ++ I + +NL I +E
Sbjct: 181 TFDECHRATGDYAY-NYIAERYHVDAKRPLVTGMSASPGGDEEAILEVCENLGIDEVEVM 239
Query: 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS 349
E D DV + H+ ++E +E+ +EI + + EVI+ +L +G+ + S
Sbjct: 240 TEEDADVDEFTHDTEVEWERIELPDAVLEIRDALNEVIKERLEKLKELGVASSTQPDQ-S 298
Query: 350 PVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
DL R + + N Q + E + ++ L L+ + + E +
Sbjct: 299 QKDLNRMRAELQTLI--NNDQSEGFEGMSIHAEVMKLRQAVTLVETQSVEALRRYFERQR 356
Query: 410 KQGSFARFMSKNEDIR---KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVI 466
Q + ++ + +V+ M+++ PK SK +L + + + RVI
Sbjct: 357 NQARTSGASKASQRMVSDPRVREAMRKAERFDEIHPKYSKARMLLAETLGLEGGE--RVI 414
Query: 467 IFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVI 526
+F+ R + + + L+ D + F+GQ S G +Q QQAVL++FRAG + V+
Sbjct: 415 VFTESRDTAEALTDFLSESFDTKR---FVGQGDRDGSDGMTQTQQQAVLDEFRAGEFEVL 471
Query: 527 VATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 472 VSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQTEGRV 516
>gi|150402564|ref|YP_001329858.1| Hef nuclease [Methanococcus maripaludis C7]
gi|150033594|gb|ABR65707.1| ERCC4 domain protein [Methanococcus maripaludis C7]
Length = 749
Score = 206 bits (525), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 159/474 (33%), Positives = 243/474 (51%), Gaps = 30/474 (6%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P + R YQ + +AL NTL L TGLGKT IAA+ I +GK++ AP
Sbjct: 7 LIKPETIEARIYQQLVVASALKQNTLCVLGTGLGKTAIAALTIAGILSK-QNGKVLIIAP 65
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
SRPLV Q ++ + + I E + + G+ISP KR + W++ ++F TPQV E DI S
Sbjct: 66 SRPLVDQHFKSMNQFLNIDSEKIVILNGKISPKKREAMWESGKIFIATPQVAENDIISKM 125
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
L+ DEAH TGN++Y + + +L LTA+PGS + I I NL
Sbjct: 126 LKPSQFSLLIADEAHHTTGNHSYTFVANKFKK---KSHVLGLTASPGSNIERIIEICGNL 182
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
I +E + E D DV+ YV K+ VE+ +E EIN + + RL L +
Sbjct: 183 GIEHVEIKTEEDPDVAPYVAKVKMRPKRVELPEE-FEINLTLLK--NALKDRLR--DLKE 237
Query: 342 NRDYQTL--SPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIR 399
NR ++ + +LL + IK+ E+ + L H +L + G
Sbjct: 238 NRVIHSINVNKSELLGLNKRIMTMD----DNIKY-EMLRISSEAVKLEHAIEMLETQGRS 292
Query: 400 PAYEMLEEKLKQGSFARFMSKNED--IRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKT 457
++ L Q + + N+ I+ VK L + I H PK KMLE+ V T
Sbjct: 293 TFLSYYQKLLTQNTKSAKEITNDPRFIQVVKNLNELDIEH----PKYEKMLEI-VKEILT 347
Query: 458 KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEK 517
++ K +IIF+ +R +V+ I++ L+ + ++A F+GQS+ K KG SQK Q +E+
Sbjct: 348 ENEK---IIIFAQYRDTVQKIVDLLSE--NNIEAIMFVGQSN-KDGKGMSQKEQAKAIER 401
Query: 518 FRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
F++ NV+V+TS+ EEG+DI V+ V+ ++ S +RMIQR GR R G++
Sbjct: 402 FKSDA-NVLVSTSVSEEGIDISSVNYVLFYEPVPSEIRMIQRRGRAARGEGGQV 454
>gi|255514192|gb|EET90454.1| DEAD/DEAH box helicase domain protein [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 517
Score = 206 bits (525), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 150/484 (30%), Positives = 239/484 (49%), Gaps = 33/484 (6%)
Query: 101 TW--IYPVNVPV-------RDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRW 150
+W I P NV V R YQ I K+ NTLV LPTGLGKTLIA I
Sbjct: 4 SWEDISPYNVIVNTTGMDARAYQINILKSIYAGRNTLVVLPTGLGKTLIAVFAISK--SL 61
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
+ K + AP+RPL Q ++ ++ I TG + +KR RV TP
Sbjct: 62 YEGKKALMLAPTRPLSEQHYDSLLKLLKINATDIFLATGSVRGSKRQELESASRVVVATP 121
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
Q + D+ G + ++ DE H+A G Y+Y E +Q +L LTA+PGS
Sbjct: 122 QTIYNDMIKGRLSLSDFGIVIFDECHKAVGKYSYTYIANECKERGIQ--VLGLTASPGSD 179
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
Q+ I+ ++ L I +E R+ D+DVS YV + VE + I + VI +
Sbjct: 180 QKRIRELVAALGIEKIEARSSLDEDVSPYVMGTSTRTVYVEKSEPIKAITAVLKPVIDEH 239
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR 390
L IG+ ++++ + L+ + + N +F + Y L+ L H
Sbjct: 240 LHNLYKIGMSPFKEFEHMPKGKLIEIGNNISKIEAKNY---RFNAMFNYV-YLLNLVHAY 295
Query: 391 RLLSSHGIRP---AYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKM 447
L+S+ GI P +E L+ + K+ M KN ++++ + + + G + PK+ +
Sbjct: 296 DLISTEGIYPFLNYFESLQSREKKSRSLESMLKNAEVKRAIDIAMHAAAAGEEHPKMWMI 355
Query: 448 LEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQS 507
++L +K IIF +R +++ +++ L G+ + A F+G+++G +
Sbjct: 356 ADILRQQGASKS-----TIIFVQYRSTIKKLVDILN--GEGISAMAFVGKNNG-----VT 403
Query: 508 QKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH 567
Q++Q + LEKFR+G + V+VA+SIGEEGLDI VD+VI ++ S +R IQR GRTGR
Sbjct: 404 QEMQSSTLEKFRSGKFKVLVASSIGEEGLDIPSVDMVIFYEPIPSAIRNIQRKGRTGRFR 463
Query: 568 DGRI 571
G +
Sbjct: 464 FGEV 467
>gi|435849257|ref|YP_007311507.1| ERCC4-like helicase [Natronococcus occultus SP4]
gi|433675525|gb|AGB39717.1| ERCC4-like helicase [Natronococcus occultus SP4]
Length = 814
Score = 206 bits (524), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 136/462 (29%), Positives = 226/462 (48%), Gaps = 8/462 (1%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V G + AP++PLV Q
Sbjct: 26 RLYQLKLAGTAANHHTLVCLPTGLGKTTVSLLVTARRLEEVG-GTALMLAPTKPLVQQHA 84
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
E + +P + + TG +SP RA+ W+ V TPQV+E D+ + +
Sbjct: 85 EFYREALQVPDDEIVVFTGDVSPDDRAALWEDATVVMATPQVIENDLVGSRISLSDVTHC 144
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG ++ I + +NL + +E
Sbjct: 145 TFDECHRATGDYAYNYIAERYHADARDPLVTGMSASPGGDEEAILEVCENLGLQEVEVMT 204
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV+ + H+ +E +++ +E +EI + + EVI L +G+ + S
Sbjct: 205 EEDADVAEFTHDTDVEWERIDLPEEVLEIRDALNEVITDRLETLKELGVAGSTQPDQ-SQ 263
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFG-EVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
DL R + ++ + + G V A L + S +R ++ +
Sbjct: 264 KDLNRMRAELQRLIDNDQSEGFEGMSVHAEVMKLRQAVTLVETQSVEALRRYFDRQRNQA 323
Query: 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469
+ ++ + +V+ M+++ PK K +L + +D + RVI+F+
Sbjct: 324 RSSGASKASQRMVSDPRVREAMRRAEKFDELHPKYRKSRMLLAETLGLEDGE--RVIVFT 381
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
R + + L+ D A F+GQ + S G +QK QQ VL+ FRAG + V+V+T
Sbjct: 382 ESRDTAEALTEFLSESFD---AKRFVGQGDREGSDGMTQKEQQEVLDAFRAGKFEVLVST 438
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
S+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 439 SVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 480
>gi|448315775|ref|ZP_21505414.1| Hef nuclease [Natronococcus jeotgali DSM 18795]
gi|445610534|gb|ELY64304.1| Hef nuclease [Natronococcus jeotgali DSM 18795]
Length = 814
Score = 206 bits (523), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 137/462 (29%), Positives = 225/462 (48%), Gaps = 8/462 (1%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V G + AP++PLV Q
Sbjct: 26 RLYQLKLAGTAANHHTLVCLPTGLGKTTVSLLVTARRLEEVG-GTALMLAPTKPLVQQHA 84
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
E + IP + + TG +SP RA+ W V TPQV+E D+ + +
Sbjct: 85 EFYREALQIPDDEIVVFTGDVSPDDRAALWTEATVVMATPQVIENDLVGSRISLSDVTHC 144
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG ++ I + +NL + +E
Sbjct: 145 TFDECHRATGDYAYNYIAERYHADANDPLVTGMSASPGGDEEAILEVCENLGLQEVEVMT 204
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV+ + H+ +E +E+ +E +EI + + EVI +L +G+ + S
Sbjct: 205 EEDADVAEFTHDTDVEWERIELPEEVLEIRDALNEVITDRLEKLKELGVASSTQPDQ-SQ 263
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFG-EVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409
DL R + +Q + + G V A L + S +R +E +
Sbjct: 264 KDLNRMRAELQQLIDNDQSEGFEGMSVHAEVMKLRQAVTLVETQSVEALRRYFERQRNQA 323
Query: 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469
+ ++ + +V+ ++++ + PK K +L + + RVI+F+
Sbjct: 324 RSSGASKASQRMVSDPRVRESIRKAENFDEIHPKYRKSRMLLAETLGLE--GGDRVIVFT 381
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
R + + + L+ D A F+GQ + S G +QK QQ VL+ FR G + V+V+T
Sbjct: 382 ESRDTAEALTDFLSESFD---AKRFVGQGDREGSDGMTQKEQQEVLDAFRGGEFEVLVST 438
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
S+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 439 SVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 480
>gi|448407016|ref|ZP_21573448.1| Hef nuclease [Halosimplex carlsbadense 2-9-1]
gi|445676822|gb|ELZ29339.1| Hef nuclease [Halosimplex carlsbadense 2-9-1]
Length = 850
Score = 206 bits (523), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 136/484 (28%), Positives = 233/484 (48%), Gaps = 33/484 (6%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + AL ++TLV LPTGLGKT ++ +V + K + AP++PLV Q
Sbjct: 23 RTYQRKLADAALETHTLVCLPTGLGKTTVSLLVTADRLAGDVVNKSLLLAPTKPLVTQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
E + +P + + TG P RA W R+ TP+V+E D+ + +V
Sbjct: 83 EFYREALEVPDDEIVVYTGDTRPDDRADLWSGARIVVATPEVVENDLVGNRIDLTDVVHC 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY ++A+PG ++ I + NL ++ +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHEQARDSLATGMSASPGDDEEAILEVCANLGLAQVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGL-------LQNR 343
E D DVS+Y H ++ +E+ + +E+ + I EVI ++L +G+ + R
Sbjct: 203 EDDADVSTYTHETSVDWERIELPETVIELRDAINEVIEDRLAKLRELGVTNTSKADVSER 262
Query: 344 DYQTLSPV--DLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPA 401
+ Q + DL+N+ L +++ + ++ +RR
Sbjct: 263 EIQKIQGQLRDLMNNDQSEGYEGMSFLAEVRKLRTAVTYAETQSVESLRRYF-------- 314
Query: 402 YEMLEEKLKQGSFARFMSKNEDIR-----KVKLLMQQSISHGAQSPKLSKMLEVLVDHFK 456
E+ KQ + + SK D R KV+ ++++ + PK + ++
Sbjct: 315 -----ERQKQAARSSGASKA-DQRMISEPKVREAIRRAEDYDDLHPKFRRTRMLIAQTLG 368
Query: 457 TKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLE 516
++ RVI+F+ R + + + L G+ A +F+GQS + S G +Q QQ L+
Sbjct: 369 IENG--DRVIVFTESRDTAETLTDFL---GEHFTARKFVGQSDTEGSDGMTQNEQQETLD 423
Query: 517 KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFK 576
+FRAG + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +G + +
Sbjct: 424 EFRAGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRAIQRKGRTGRQTEGAVSVLLA 483
Query: 577 PEVQ 580
+ +
Sbjct: 484 EDTR 487
>gi|448366932|ref|ZP_21554963.1| Hef nuclease [Natrialba aegyptia DSM 13077]
gi|445653841|gb|ELZ06701.1| Hef nuclease [Natrialba aegyptia DSM 13077]
Length = 834
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 141/481 (29%), Positives = 231/481 (48%), Gaps = 29/481 (6%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V G + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAANDHTLVCLPTGLGKTTVSLLVTARRLEEVG-GTALMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIP-----------------QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
+ + I E + TG +SP RA W V TPQV+
Sbjct: 83 DFYREALQISDTDERNSSSDQNAERSENEEIVVFTGDVSPDDRAELWADATVVMATPQVI 142
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
E D+ G + + L DE HRATG+YAY + ++A+PG ++
Sbjct: 143 ENDLVGGRISLSDVTHLTFDECHRATGDYAYNYIAERYHEDARDPLVTGMSASPGGDEEA 202
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
I + +NL + +E E D DV + H+ ++E +++ + +EI + + EVI+ +
Sbjct: 203 ILEVCENLGLQEVEVMTEEDADVDEFTHDTEVEWERIDLPDDVLEIRDALNEVIKDRLEK 262
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L +G+ ++ S DL R + +Q N Q + E + ++ L L+
Sbjct: 263 LKELGVAKSTQPDQ-SQKDLNKMRAELQQLI--NNDQSEGFEGMSIHAEVMKLRQAVTLV 319
Query: 394 ---SSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEV 450
S +R ++ + + ++ + +V+ M+++ S PK K +
Sbjct: 320 ETQSVEALRRYFDRQRNQARSSGASKASQRMVSDPRVREAMRKAESFSELHPKYRKTRML 379
Query: 451 LVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKV 510
L + +D + RVI+F+ R + + LA D A F+GQ + S G +QK
Sbjct: 380 LAETLGIEDGE--RVIVFTESRDTAEALTEFLAESCD---AKRFVGQGDREGSDGMTQKQ 434
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
QQ VL++FRAG + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR
Sbjct: 435 QQEVLDEFRAGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGR 494
Query: 571 I 571
+
Sbjct: 495 V 495
>gi|288561345|ref|YP_003424831.1| Hef nuclease [Methanobrevibacter ruminantium M1]
gi|288544055|gb|ADC47939.1| Hef nuclease [Methanobrevibacter ruminantium M1]
Length = 842
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 140/494 (28%), Positives = 250/494 (50%), Gaps = 34/494 (6%)
Query: 103 IYPVNVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
I P R YQ + L + NT++ PT LGKT+IA +V + + K++ AP
Sbjct: 10 IRPNAAEARIYQQVLAANVLKNGNTMIVAPTALGKTIIAILVAADRLQKLKGSKVLILAP 69
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
S+PL +Q E + + +P +TG + +R W + TPQ +E D+ +
Sbjct: 70 SKPLAIQHEENFKHFLNLP---CTSITGAVKTDEREKRWDASSIICATPQTIESDLLNER 126
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+ + LV DE H A G+Y+Y + IL LTA+PG + I+ + +NL
Sbjct: 127 YTLDDVSLLVFDECHHAVGSYSYVYLAHRYVKESNNHLILGLTASPGHDKSKIKEVCENL 186
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
+I + + E D DV Y + +I+ + V++G+E +I + + + ++ L ++G++
Sbjct: 187 FIQDITIKTEDDPDVKPYFNPIQIDWVRVQLGEELEKIRDLVNKALKVRLKGLKSLGVIN 246
Query: 342 NRDYQTLSPVDLLNSRDKFRQ--APPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIR 399
+++ D+L +R + ++ N P+ F + + A+I L H LL + G+
Sbjct: 247 T---VSVTKRDVLKARSRVQRKIGQSVNPPKECFQAI-SILSAVINLQHSLELLETQGVV 302
Query: 400 PAYEMLEE-KLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVL-----VD 453
P + ++ + K A+ + + + K +++ G + PK++K++E+L VD
Sbjct: 303 PFNDYIKRLRKKTTKAAKNILLDPNFSKAIYFAKEAEEKGLEHPKMNKLVELLKLELGVD 362
Query: 454 HFKTK------DPKHS----------RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ 497
+T+ D S ++I+F+ FR ++ I G +K+ F GQ
Sbjct: 363 EAQTRLTSLRNDSDSSMDEKVKEDSPKIIVFTQFRDTLDMIHERCEREG--IKSVRFFGQ 420
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
+ KG +QK Q+ +++ F+ G Y+V+++TS+ EEG+DI VDLVI ++ S +RMI
Sbjct: 421 GTSDGKKGLTQKEQKKIIKSFKTGNYDVLISTSVAEEGIDIPAVDLVIMYEPVPSEVRMI 480
Query: 558 QRMGRTGRKHDGRI 571
QR GRTGRK GR+
Sbjct: 481 QRRGRTGRKSSGRM 494
>gi|448737900|ref|ZP_21719932.1| Hef nuclease [Halococcus thailandensis JCM 13552]
gi|445802761|gb|EMA53063.1| Hef nuclease [Halococcus thailandensis JCM 13552]
Length = 811
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 140/478 (29%), Positives = 228/478 (47%), Gaps = 22/478 (4%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
+ P + R YQ + A +TLV LPTGLGKT ++ +V G + AP
Sbjct: 13 LVEPGVLERRRYQAELADQAASGHTLVCLPTGLGKTTVSLLVTAQRLHE-QGGTSLLLAP 71
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
++PLV Q E + IP + + TG++SP R ++ RV TPQV+E D+ G
Sbjct: 72 TKPLVTQHAEFYRAALTIPDDEIVVFTGEVSPDDREELFERARVVIATPQVVENDLIGGR 131
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+ L DE HRA+G+YAY + Q + ++A+PG ++ IQ + +NL
Sbjct: 132 IDLSDTTHLTFDECHRASGDYAYNYIAERYHADAEQPLVTGMSASPGGDREAIQSVCENL 191
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
++ + E D DV+ Y H+ +E V + E + I + + VI +L +G+
Sbjct: 192 GLANVAVMTEEDADVADYTHDTSVEWERVTLPDEILAIRDSLVAVIEDRLEKLKELGVSH 251
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI--TLYHIRRLL------ 393
+S DL R + +Q I + E Y G I + +RR +
Sbjct: 252 TTSAD-ISQRDLNRIRSELQQL-------IDNDQSEGYEGMSIHAEVMKLRRAVTLAETQ 303
Query: 394 SSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVD 453
S +R +E + ++ + KV+ M+Q+ ++ PK + +L
Sbjct: 304 SVESLRRYFERQRNAARSSGASKASQRLVSEAKVREAMEQAETYDDLHPKFRRTRILLAQ 363
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
+ RVI+F+ R + + L G + +F+GQ + S G +Q QQ
Sbjct: 364 CLGIDGGE--RVIVFTESRDTAETLTEFL---GAHFETRKFVGQGDKEGSDGMTQNEQQE 418
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
L+ FRAG + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 419 TLDAFRAGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQTEGRV 476
>gi|448351177|ref|ZP_21539986.1| Hef nuclease [Natrialba taiwanensis DSM 12281]
gi|445634861|gb|ELY88035.1| Hef nuclease [Natrialba taiwanensis DSM 12281]
Length = 834
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 141/481 (29%), Positives = 231/481 (48%), Gaps = 29/481 (6%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V G + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAANDHTLVCLPTGLGKTTVSLLVTARRLEEVG-GTALMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIP-----------------QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
+ + I E + TG +SP RA W V TPQV+
Sbjct: 83 DFYREALQISDIDERNSSSDQNAERSENEEIVVFTGDVSPDDRAELWADATVVMATPQVI 142
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
E D+ G + + L DE HRATG+YAY + ++A+PG ++
Sbjct: 143 ENDLVGGRISLSDVTHLTFDECHRATGDYAYNYIAERYHEDARDPLVTGMSASPGGDEEA 202
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333
I + +NL + +E E D DV + H+ ++E +++ + +EI + + EVI+ +
Sbjct: 203 ILEVCENLGLQEVEVMTEEDADVDEFTHDTEVEWERIDLPDDVLEIRDALNEVIKDRLEK 262
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
L +G+ ++ S DL R + +Q N Q + E + ++ L L+
Sbjct: 263 LKELGVAKSTQPDQ-SQKDLNKMRAELQQLI--NNDQSEGFEGMSIHAEVMKLRQAVTLV 319
Query: 394 ---SSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEV 450
S +R ++ + + ++ + +V+ M+++ S PK K +
Sbjct: 320 ETQSVEALRRYFDRQRNQARSSGASKASQRMVSDPRVREAMRKAESFSELHPKYRKTRML 379
Query: 451 LVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKV 510
L + +D + RVI+F+ R + + LA D A F+GQ + S G +QK
Sbjct: 380 LAETLGIEDGE--RVIVFTESRDTAEALTEFLAESCD---AKRFVGQGDREGSDGMTQKQ 434
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
QQ VL++FRAG + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR
Sbjct: 435 QQEVLDEFRAGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGR 494
Query: 571 I 571
+
Sbjct: 495 V 495
>gi|448731379|ref|ZP_21713679.1| Hef nuclease [Halococcus saccharolyticus DSM 5350]
gi|445792132|gb|EMA42744.1| Hef nuclease [Halococcus saccharolyticus DSM 5350]
Length = 816
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 142/473 (30%), Positives = 229/473 (48%), Gaps = 30/473 (6%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + + A +TLV LPTGLGKT ++ +V G + AP++PLV Q
Sbjct: 22 RQYQVELAREAARGHTLVCLPTGLGKTTVSLLVTATRLHEVG-GTALLLAPTKPLVTQHT 80
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
E + IP E + TG++ P R ++ RV TPQV+E D+ G + + L
Sbjct: 81 EFYREALTIPDEEIVVFTGEVRPDDREDLFERARVVIATPQVIENDLIGGRIDLADVSHL 140
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRA+G YAY + + ++A+PG ++ I+ + +NL +ST+
Sbjct: 141 TFDECHRASGEYAYNYIAERYHADSEAPLVTGMSASPGGDEEAIRSVCENLGLSTVAVMT 200
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV++Y H +E V + E + I + + VI L +G+ ++ +S
Sbjct: 201 EDDADVAAYTHRTDVEWERVTLPDEILAIRDALVAVIEDRLEGLKELGVTRSTSAD-ISQ 259
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI--TLYHIRRLL------SSHGIRPAY 402
DL R + +Q I + E Y G I + +RR + S +R +
Sbjct: 260 RDLNRIRGELQQL-------IDNDQSEGYEGMSIHAEVMKLRRAVTLAETQSVESLRRYF 312
Query: 403 EMLEEKLKQGSFA----RFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTK 458
E + + RF+S+ KV+ M + PK + +L +
Sbjct: 313 ERQRNAARSSGASKAAQRFVSEA----KVRDAMDRVERFDDLHPKFRRARILLAQTLGIE 368
Query: 459 DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518
D + RVI+F+ R + + + L G+ +F+GQ + S G +QK QQ L++F
Sbjct: 369 DGE--RVIVFTESRDTAETLTDFL---GEHFSTRKFVGQGDKEGSDGMTQKEQQETLDEF 423
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
R G + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 424 RNGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQTEGRV 476
>gi|15791152|ref|NP_280976.1| Hef nuclease [Halobacterium sp. NRC-1]
gi|169236908|ref|YP_001690108.1| Hef nuclease [Halobacterium salinarum R1]
gi|10581766|gb|AAG20456.1| ATP-dependent RNA helicase homolog eIF-4A [Halobacterium sp. NRC-1]
gi|167727974|emb|CAP14762.1| ATP-dependent RNA helicase/nuclease Hef [Halobacterium salinarum
R1]
Length = 784
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 140/475 (29%), Positives = 225/475 (47%), Gaps = 27/475 (5%)
Query: 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD--GKIVFAAPSRPL 165
+ R YQ + A +TLV LPTGLGKT ++ +V +R D G + AP++PL
Sbjct: 18 IEARQYQLQLAAAARQGHTLVCLPTGLGKTTVSLLV--TAYRLADDAGGTALLLAPTKPL 75
Query: 166 VMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMK 225
V Q + IP + + TG+ P R + W RV TPQV+E D+ G M
Sbjct: 76 VEQHAGFYREALAIPDDDVVVFTGETRPDDRRAAWTDARVVVATPQVVENDLVGGRIDMD 135
Query: 226 YLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYIST 285
+V DE HRATG+YAY + + A++A+PG + I+ + +NL +
Sbjct: 136 DVVHCTFDECHRATGDYAYTYVAERYHADAAAPLVTAMSASPGGTEAEIRTVCENLGVGN 195
Query: 286 LEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDY 345
+E E D DV + H+ ++ V + +E +E+ + I +VI ++L IG+ +
Sbjct: 196 VEVMTEDDADVGEHTHDTDVQWERVTLPEEILEVRDAINDVIEDRLAKLREIGVTKASS- 254
Query: 346 QTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA-----LITLYHIRRLLSSHGIRP 400
+S DL R + +Q I + + Y G ++ L L+ + +
Sbjct: 255 PDISQKDLNEIRARLQQL-------IDDDDSDGYQGMSVHAEVMKLKRAVELVETQSVES 307
Query: 401 AYEMLEEKLKQGSFARFMSKNEDIRK---VKLLMQQSISHGAQSPKLSKMLEVLVDHFKT 457
E + + A ++ + VK M+ + PK + +L +
Sbjct: 308 VRRYFERQRNAANTAGASKASQRLVSEPAVKRAMRTAREFDGLHPKFRQARMLLAETLGI 367
Query: 458 KDPKHSRVIIFSNFRGSVRDIMNAL-ATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLE 516
+D RVI+F+ R D AL A +G+ F+GQ S G +Q Q+ L
Sbjct: 368 EDG--DRVIVFTESR----DTAEALTAFLGEHFDTRRFVGQGDADGSDGMTQTEQRETLA 421
Query: 517 KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+FR G + V+V+TS+ EEGLD+ EVDLV+ F+ + +R +QR GRTGR+ GR+
Sbjct: 422 EFRNGDFEVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSVQRKGRTGRQTAGRV 476
>gi|448342391|ref|ZP_21531342.1| Hef nuclease [Natrinema gari JCM 14663]
gi|445625768|gb|ELY79122.1| Hef nuclease [Natrinema gari JCM 14663]
Length = 819
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 136/464 (29%), Positives = 230/464 (49%), Gaps = 12/464 (2%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V GK + AP++PLV Q
Sbjct: 24 RLYQLKLAGTAANHHTLVCLPTGLGKTTVSLLVTARRLEEVG-GKSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + + E + TG +SP RA+ W++ V TPQV+E D+ + +
Sbjct: 83 DFYREALQLSDEEIVVFTGDVSPDDRAATWESATVVMATPQVIENDLVGSRISLADVTHA 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + + ++A+PG ++ I + +NL I +E
Sbjct: 143 TFDECHRATGDYAYNYIAERYHADAKRPLVTGMSASPGGDEEAILEVCENLGIDEVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV + H+ ++E +++ +EI + + EVI+ +L +G+ + S
Sbjct: 203 EEDADVDEFTHDTEVEWERIDLPDAVLEIRDALNEVIKERLEKLKELGVASSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
DL R + + N Q + E + ++ L L+ + + E +
Sbjct: 262 KDLNRMRAELQTLI--NNDQSEGFEGMSIHAEVMKLRQAVTLVETQSVEALRRYFERQRN 319
Query: 411 QGSFARFMSKNEDIR---KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
Q + ++ + +V+ M+++ PK SK +L + + + RVI+
Sbjct: 320 QARTSGASKASQRMVSDPRVREAMRKAERFDEIHPKYSKARMLLAETLGLEGGE--RVIV 377
Query: 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
F+ R + + + L+ D + F+GQ S G +Q QQAVL++FRAG + V+V
Sbjct: 378 FTESRDTAEALTDFLSESFDTKR---FVGQGDRDGSDGMTQTQQQAVLDEFRAGEFEVLV 434
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 435 STSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQTEGRV 478
>gi|335438600|ref|ZP_08561337.1| Hef nuclease [Halorhabdus tiamatea SARL4B]
gi|334891007|gb|EGM29264.1| Hef nuclease [Halorhabdus tiamatea SARL4B]
Length = 834
Score = 203 bits (516), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 137/478 (28%), Positives = 226/478 (47%), Gaps = 24/478 (5%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ + A +TLV LPTGLGKT ++ +V GK + AP+
Sbjct: 16 VEPGVLEQRSYQTKLADAAAADHTLVCLPTGLGKTAVSLLVTAERLHEVG-GKSLLLAPT 74
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
+PLV Q + + I E + TG++ P RA W++ V TPQV+E D+
Sbjct: 75 KPLVQQHADFYREALTIDDEEIVVFTGEVRPDDRAELWESATVVVATPQVVENDLLGSRI 134
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
+ + DE HRA+G Y Y V + ++A+PG ++ I + DNL
Sbjct: 135 DLSPVTHCTFDECHRASGEYPYTYIAERYHEESVDPLVTGMSASPGDDEEAILQVCDNLG 194
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I +E D DV +Y HN + VE+ + VEI + + +VI ++L +G+ +
Sbjct: 195 IREVEVMTSEDADVEAYTHNTSVNWERVELPEPVVEIRDALQDVIHDRMTQLKELGVTSS 254
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS------- 395
+S ++ + K R+ + + E Y G + L +R+L ++
Sbjct: 255 TQAD-VSEREIRKIQAKLREL-------MDNDQSEGYQG-MSLLAEVRKLRTAVTYAETQ 305
Query: 396 --HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVD 453
+R E L E + ++ + KV+ +++ PK + + +
Sbjct: 306 SVESLRRYLERLREAARSSGASKADQRLISAPKVREARRKAEDFDDLHPKFRRTRMQIAE 365
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
D + RVI+F+ R + + + LA + +F+GQS S G +Q QQ
Sbjct: 366 TLGIHDGE--RVIVFTESRDTAETLTDFLA---EHFTVEKFVGQSDTDGSDGMTQTEQQE 420
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
LE FRAG + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +G +
Sbjct: 421 TLEAFRAGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQTEGAV 478
>gi|118380585|ref|XP_001023456.1| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila]
gi|89305223|gb|EAS03211.1| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila SB210]
Length = 1858
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 132/215 (61%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
+++++ + W Y + R+YQ++I KT L +NTLVALPTGLGKT IAA VI N++ W
Sbjct: 119 NLEVNQNTIQYWYYTLGKSFREYQYSIVKTCLSNNTLVALPTGLGKTFIAATVILNYYLW 178
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
FP GKI F AP+RPLV QQ+E I + +MTG KR + KR+FF TP
Sbjct: 179 FPKGKIFFLAPTRPLVNQQMECLSQFELINKNDIFEMTGNYPIPKRRDVYLRKRIFFCTP 238
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
Q LE D+ L ++ DEAHR TG YAY + S+ RILAL+ATPG++
Sbjct: 239 QTLENDLIEQRYDGYNLSLVIFDEAHRGTGKYAYVNIVTHFESLGYGYRILALSATPGNE 298
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKI 305
+ IQ ++ NL IS LE ++E D D+ Y+H+++I
Sbjct: 299 FEQIQDVLKNLRISKLEIKDEEDPDIKQYIHSKQI 333
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 89/139 (64%), Gaps = 10/139 (7%)
Query: 442 PKLSKMLEVLVDHFKTKDP--KHSRVIIFSNFRGSVRDIMNALATI------GD-LVKAT 492
PK K++E+L ++F ++ S+ IIF+ R S ++ L I GD L+++
Sbjct: 494 PKSEKLVELLTNYFLEEESIVNRSKTIIFTQSRNSASELKKLLNNIDVVNPAGDKLIRSE 553
Query: 493 EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
FIGQ++ +G +QK Q ++ F+ YN ++AT IGEEGLDI EVDL++C+D+ S
Sbjct: 554 IFIGQANLDG-QGMNQKAQIETIKLFKQNVYNTLIATCIGEEGLDIGEVDLIVCYDSGFS 612
Query: 553 PLRMIQRMGRTGRKHDGRI 571
P+RMIQRMGRTGRK G++
Sbjct: 613 PIRMIQRMGRTGRKRAGKV 631
>gi|433640051|ref|YP_007285811.1| ERCC4-like helicase [Halovivax ruber XH-70]
gi|433291855|gb|AGB17678.1| ERCC4-like helicase [Halovivax ruber XH-70]
Length = 819
Score = 202 bits (514), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 136/469 (28%), Positives = 225/469 (47%), Gaps = 22/469 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V G + AP++PLV Q
Sbjct: 24 RLYQLQLAGTAADDDTLVCLPTGLGKTTVSLLVTARRLDEVG-GTSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
E + IP + + TG++SP R + W + TPQV+E D+ + + L
Sbjct: 83 EFYREALQIPDDEIVVFTGEVSPDDRQALWDEATIVLATPQVIENDLVGSRISLSDVTHL 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG ++ I + DNL + +
Sbjct: 143 TFDECHRATGDYAYNYIAERYHADARDPLVTGMSASPGGDEEAILDVCDNLGLQEVAVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
D DV + H+ +E +++ E +EI + + EVI +L +G+ + S
Sbjct: 203 REDADVEEFTHDTDVEWERIDLPDEVLEIRDALNEVITDRLEKLKELGVASSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFG--ALITLYHIRRLL------SSHGIRPAY 402
DL R + ++ I + E Y G A + +R+ + S +R +
Sbjct: 262 KDLNKMRAELQKL-------INNDQSEGYKGMSAHAEVMKLRQAVTLVETQSVEALRRYF 314
Query: 403 EMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462
E + + ++ + +V+ M+++ PK +K +L + + +
Sbjct: 315 ERQRNQARSSGASKASQRLVSDPRVREAMRKAEKFDDLHPKYAKTRMLLAETLGLEGGE- 373
Query: 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG 522
RVI+F+ R + + L+ D A F+GQ + S G +Q QQ LE FRAG
Sbjct: 374 -RVIVFTESRDTAEALTEFLSESFD---ARRFVGQGDREGSDGMTQTEQQDALEAFRAGE 429
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 430 FEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 478
>gi|150399457|ref|YP_001323224.1| Hef nuclease [Methanococcus vannielii SB]
gi|150012160|gb|ABR54612.1| ERCC4 domain protein [Methanococcus vannielii SB]
Length = 776
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 156/476 (32%), Positives = 242/476 (50%), Gaps = 46/476 (9%)
Query: 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167
+ R YQ + AL NTL L TGLGKT IAA+ I +GK++ APSRPLV
Sbjct: 13 IEARIYQQLVVANALKQNTLCVLGTGLGKTAIAALTIAGILSK-RNGKVLIIAPSRPLVD 71
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYL 227
Q ++ ++ + I E I + G+ISP KR WKT ++F TPQV E DI SG K
Sbjct: 72 QHQKSMNSFLNIDPEKIIVLNGKISPLKREEMWKTGKIFIATPQVAENDIISGILKTKDF 131
Query: 228 VCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLE 287
L+ DEAH TGN++Y + IL LTA+PGS + I I +NL + +E
Sbjct: 132 SLLIADEAHHTTGNHSYTFVAN---TFKQNSHILGLTASPGSNIEKIMEICENLGVEHVE 188
Query: 288 YRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQT 347
+ E D DV YV K+ +VE+ +E ++ N ++ + RL+ L N+ T
Sbjct: 189 IKTEEDPDVLPYVAKVKMRPRKVELPKEFLD-NLKLLK--NALKERLTI--LKDNKVIYT 243
Query: 348 L--SPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEML 405
+ + DL+ K IK+ E+ + + H +L + G
Sbjct: 244 INVNKSDLIGLNKKIMTMDDS----IKY-EMLKVSSEAVKIEHAIEMLETQGKSTFLNYY 298
Query: 406 EEKLKQGSFA--------RFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKT 457
++ L Q + + RF+ E++ ++ +I H PK K+LE+ T
Sbjct: 299 QKMLSQNTKSAKSITLDHRFLQVVENLNEI------NIEH----PKYDKLLEI------T 342
Query: 458 KD--PKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVL 515
K+ ++ ++IIF+ +R +V+ I+ L+ ++A F+GQS+ K KG SQK Q +
Sbjct: 343 KEILEQNEKMIIFAQYRDTVQKIVELLSKHN--IEAITFVGQSN-KDGKGMSQKEQIKAI 399
Query: 516 EKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
E+F++ NV+V+TS+ EEG+DI V+ V+ ++ S +RMIQR GR R G +
Sbjct: 400 ERFKSDA-NVLVSTSVSEEGIDISSVNYVLFYEPVPSEIRMIQRRGRAARGEGGEV 454
>gi|448376033|ref|ZP_21559317.1| Hef nuclease [Halovivax asiaticus JCM 14624]
gi|445658051|gb|ELZ10874.1| Hef nuclease [Halovivax asiaticus JCM 14624]
Length = 819
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/469 (28%), Positives = 225/469 (47%), Gaps = 22/469 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V G + AP++PLV Q
Sbjct: 24 RLYQLQLAGTAADDDTLVCLPTGLGKTTVSLLVTARRLDEVG-GTSLMLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
E + +P + + TG++SP R + W + TPQV+E D+ + +
Sbjct: 83 EFYREALQVPDDGIVVFTGEVSPDDRQALWDEATIVLATPQVIENDLVGSRISLADVTHC 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG ++ I + DNL + +
Sbjct: 143 TFDECHRATGDYAYNYIAERYHADARDPLVTGMSASPGGDEEAILDVCDNLGLQEVAVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
D DV + H+ +E +++ E +EI + + EVI +L +G+ + S
Sbjct: 203 REDADVEEFTHDTDVEWERIDLPDEVLEIRDALNEVITDRLEKLKELGVASSTQPDQ-SQ 261
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFG--ALITLYHIRRLL------SSHGIRPAY 402
DL R + ++ I + E Y G A + +R+ + S +R +
Sbjct: 262 KDLNKMRAELQKL-------INNDQSEGYKGMSAHAEVMKLRQAVTLVETQSVEALRRYF 314
Query: 403 EMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462
E + + ++ + +V+ M+++ S PK +K +L + + +
Sbjct: 315 ERQRNQARSSGASKASQRLVSDPRVREAMRKAESFDELHPKYAKTRMLLAETLGLEGGE- 373
Query: 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG 522
RVI+F+ R + + L+ D A F+GQ + S G +Q QQ LE FRAG
Sbjct: 374 -RVIVFTESRDTAEALTEFLSESFD---ARRFVGQGDREGSDGMTQTEQQDALEDFRAGE 429
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 430 FEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 478
>gi|448320786|ref|ZP_21510271.1| Hef nuclease [Natronococcus amylolyticus DSM 10524]
gi|445605213|gb|ELY59143.1| Hef nuclease [Natronococcus amylolyticus DSM 10524]
Length = 818
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 140/471 (29%), Positives = 224/471 (47%), Gaps = 26/471 (5%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + TA +TLV LPTGLGKT ++ +V G + AP++PLV Q
Sbjct: 26 RLYQLKLAGTAANHHTLVCLPTGLGKTTVSLLVTARRLEEVG-GTSLMLAPTKPLVQQHA 84
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
E + IP + + TG +SP RA+ WK V TPQV+E D+ + +
Sbjct: 85 EFYREALQIPDDEIVVFTGDVSPDDRAALWKEATVVMATPQVIENDLVGSRISLADVTHC 144
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG ++ I + +NL + +E
Sbjct: 145 TFDECHRATGDYAYNYIAERYHADADSPLVTGMSASPGGDEEAILEVCENLGLQEVEVMT 204
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV+ + H+ +E +++ E +EI + + EVI+ +L +G+ + S
Sbjct: 205 EEDADVAEFTHDTDVEWERIDLPDEVLEIRDALNEVIKDRLEKLKELGVASSTQPDQ-SQ 263
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
DL R + ++ N Q + E + ++ L L+ + + + +
Sbjct: 264 KDLNRMRAELQKL--INNDQSEGFEGMSVHAEVMKLRQAVTLVETQSVEALRRYFDRQRN 321
Query: 411 QG-------SFARFMSK---NEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDP 460
Q + R +S E IRK + Q PK K +L + +
Sbjct: 322 QARSSGASKASQRMVSDPRVRESIRKAERFDQ-------LHPKYRKTRMLLAETLGLE-- 372
Query: 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA 520
RVI+F+ R + + + L D A F+GQ + S G +Q QQ VL+ FR
Sbjct: 373 GGDRVIVFTESRDTAEALTDFLNESFD---AKRFVGQGDREGSDGMTQTEQQEVLDAFRG 429
Query: 521 GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
G + V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +GR+
Sbjct: 430 GEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRV 480
>gi|106364397|dbj|BAE95223.1| ATP-dependent RNA helicase [unclutured Candidatus Nitrosocaldus
sp.]
Length = 589
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 159/501 (31%), Positives = 242/501 (48%), Gaps = 56/501 (11%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
I P ++ R YQ +I A NTLV LPTGLGKT IA ++I + + G+ +F AP+
Sbjct: 37 IKPRSIEKRRYQISIASVARQKNTLVVLPTGLGKTTIALLLIADTLK--HGGRALFLAPT 94
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
R LV Q I + +TG +R W + V TPQV DI+ G
Sbjct: 95 RVLVHQHYNFLKE--HILHDGIAVLTGNTPRHERIEVWNSASVVCSTPQVTLNDIERGLI 152
Query: 223 LMKYLVCLVIDEAHRATGNYAYC--------------TAIRELMSVPVQLRILALTATPG 268
LV DEAHRA G+Y+Y ++ S +RI+ TAT
Sbjct: 153 DAGDFALLVFDEAHRAVGDYSYGRIASLLADASSSSNSSSSSSSSTGAGVRIIGFTATLP 212
Query: 269 SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE-VI 327
++ + I NL I +E R+ES DV Y+ + KIE + + + + RI E V
Sbjct: 213 DDKEKVLEIASNLMIERIEVRDESSPDVRPYIQDTKIEFVTITL----TPVMRRIREHVE 268
Query: 328 RPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY 387
R SRL + L ++ +L+ +R+ ++ IK V Y + I L
Sbjct: 269 RALQSRLEELKRLGVISSTRVNMSNLIEARE--------SISSIKGSTVPLY--SAIRLS 318
Query: 388 HIRRLLSSHGIRPA---YEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKL 444
H ++L + GI YE L EK K G R + ++ +++ L + + G + PKL
Sbjct: 319 HALKVLDTQGITAFTRFYERLREK-KGGVGVRSLVEDRELKSAYELARGAELSGLEHPKL 377
Query: 445 SKMLEVLVDHFKTKDP--------------KHSRVIIFSNFRGSVRDIMNALATIGDLVK 490
S+++E+L + D + + +IF+++R SV I + L I + K
Sbjct: 378 SRLVEILRREGFSSDEGYYSISSSSNNSNYRRGKALIFTSYRDSVEVITSRL--IAEGFK 435
Query: 491 ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
IG++ G Q+ Q V+E+FRAG Y+++VATS+GEEGLDI E +LVI +D
Sbjct: 436 VGYLIGKT---GEYGLRQEEQVEVVERFRAGEYSILVATSVGEEGLDIAECNLVIFYDNV 492
Query: 551 VSPLRMIQRMGRTGRKHDGRI 571
S +R +QR GRTGR+ G++
Sbjct: 493 PSAIRFVQRKGRTGRRMPGKV 513
>gi|193083970|gb|ACF09645.1| ATP dependent RNA helicase [uncultured marine crenarchaeote
AD1000-56-E4]
Length = 497
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 151/476 (31%), Positives = 240/476 (50%), Gaps = 40/476 (8%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
+I P +V +RDYQ + A N L+ LPTGLGKT++A VI ++ +G ++F AP
Sbjct: 10 FIVPNSVEIRDYQVNLANQAKNENCLIILPTGLGKTVVALHVIADYLAK-GNGGVLFLAP 68
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
++ LV Q E N + I I TG+ KR W + TP++ DI
Sbjct: 69 TKVLVNQHYEFLKNTLTIDDITLI--TGEDLLEKRKKLW-INSIICATPEITRNDIARKI 125
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+ ++ DEAHRA G+YAY +L + + R+L +TAT S+++ + I NL
Sbjct: 126 VDINQFNLIIFDEAHRAVGDYAYVAIAEQLNGLSI--RMLGMTATLPSEREKAKEICGNL 183
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
+I +L RN+S DV Y+ K E + V++ + I + + + L GL +
Sbjct: 184 HIKSLAERNDSSLDVKPYIQETKTEWVLVDLSSDMKIIQRYLKLALDQRYTELRRNGL-R 242
Query: 342 NRDYQTLSPVDLLNSRD----KFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
D ++LS LLN+R + R++ P F A+ Y + + +HG
Sbjct: 243 LSDNKSLSQ--LLNARQFVLKQNRRSAKP------------LFTAIRITYALN-IFEAHG 287
Query: 398 IRPAYEMLEE-KLKQGS-FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF 455
I P + + K K+G+ +++ K L + ++G + PK+ K++E+L +
Sbjct: 288 ITPFLKFCDRTKSKKGAGIKELFETDQNFMKAIDLAKNQQANGIEHPKIDKLVEILRNI- 346
Query: 456 KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVL 515
S+V+IFS++R SV I L ++ + A IG++ G Q+ Q +
Sbjct: 347 ------ESKVLIFSSYRDSVDVIQKKLVSMD--IAAEILIGKA---GQTGLKQEKQIETV 395
Query: 516 EKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
++FR G +VAT +GEEGLDI EV+LVI +D S +R IQR GRTGRK GR+
Sbjct: 396 QRFRDGVTKALVATRVGEEGLDISEVNLVIFYDNVPSSIRFIQRKGRTGRKDTGRL 451
>gi|336122551|ref|YP_004577326.1| helicase domain-containing protein [Methanothermococcus okinawensis
IH1]
gi|334857072|gb|AEH07548.1| helicase domain-containing protein [Methanothermococcus okinawensis
IH1]
Length = 797
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 155/481 (32%), Positives = 234/481 (48%), Gaps = 33/481 (6%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
+I P + R YQ I AL NTL L TGLGKT IA + I DGK++ AP
Sbjct: 7 FIKPNTMESRIYQQVIVANALKKNTLCVLGTGLGKTAIATLTIAGMLSK-KDGKVLIVAP 65
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
SRPLV Q + N + I ++ I +TG+I+P+KR W+ ++F TPQ++E DI +
Sbjct: 66 SRPLVEQHYNSLKNFLNIDEDKIIVLTGKIAPSKRKKMWEEGQIFIATPQIVENDIVANR 125
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+ L+ DEAH TGN++Y + + +L LTA+PGS I I +NL
Sbjct: 126 VNTNDFMLLIADEAHHTTGNHSYTFVASVFRN---KAHVLGLTASPGSNIDKILEICENL 182
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
I +E R D DV YV K+ ++VE+ +E E N + + RL +
Sbjct: 183 GIEHVEIRTYDDADVRDYVKTVKLRPVKVELPKEYEECINLLRS---AFKERLKVL---- 235
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPA 401
RD + + ++ S Q +P E+ I L + L G + A
Sbjct: 236 -RDNKIIYSTNINKSELLMLQKKIMTIPDNSKYELIKMASEAIKLDYAIETLECQG-KDA 293
Query: 402 YEMLEEKL--KQGSFARFMSKNEDIRK-VKLLMQQSISHGAQSPKLSKMLEVLVDHFKTK 458
+ E+L + A+ + ++ + K V L I H PK+ K++E++ K
Sbjct: 294 FLNYYERLGSQNTKSAKAVVRDSKVLKAVYKLRTSEIEH----PKMKKLVEIVNRILNKK 349
Query: 459 DP---------KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQK 509
D ++IIF+ +R +V I+ L + G + A F+GQS+ K KG SQK
Sbjct: 350 DEDKNQNKKENNKEKIIIFAQYRDTVDKIVKTLESNG--INAIPFVGQSN-KDGKGMSQK 406
Query: 510 VQQAVLEKFRA-GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD 568
Q +EKF+ NV+V+TS+ EEG+DI+ V+ VI ++ S +R IQR GR R
Sbjct: 407 KQVEAVEKFKNDDNINVLVSTSVSEEGIDIISVNNVIFYEPVPSEIRFIQRRGRASRGEG 466
Query: 569 G 569
G
Sbjct: 467 G 467
>gi|257052562|ref|YP_003130395.1| Hef nuclease [Halorhabdus utahensis DSM 12940]
gi|256691325|gb|ACV11662.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
Length = 833
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 134/470 (28%), Positives = 221/470 (47%), Gaps = 24/470 (5%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + A +TLV LPTGLGKT ++ +V GK + AP++PLV Q
Sbjct: 24 RGYQIQLADAAAADHTLVCLPTGLGKTTVSLLVTAERLHAVG-GKSLLLAPTKPLVQQHA 82
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + I E + TG++ P RA+ W V TPQV+E D+ + +
Sbjct: 83 DFYREALTIDDEEIVVFTGEVRPDDRAALWDDATVVIATPQVVENDLLGSRIDLSPVTHC 142
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRA+G Y Y + ++A+PG ++ I + DNL I +E
Sbjct: 143 TFDECHRASGEYPYTYIAERYHEDSDDPLVTGMSASPGDDEEAILGVCDNLGIREVEVMT 202
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
D DV +Y HN + VE+ + +EI + + +VI ++L +G+ + +S
Sbjct: 203 SEDADVEAYTHNTSVNWERVELPEPVIEIRDALQDVIHDRMTQLKELGVTSSTQAD-VSE 261
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS---------HGIRPA 401
++ + K R+ + + E Y G + L +R+L ++ +R
Sbjct: 262 REIRKIQAKLRELMDND-------QSEGYQG-MSLLAEVRKLRTAVTYAETQSVESLRRY 313
Query: 402 YEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPK 461
E L E + ++ + KV+ +++ PK + + + D +
Sbjct: 314 LERLREAARSSGASKADQRLISAPKVREARRKAEDFEDLHPKFRRTRMQIAETLGIHDGE 373
Query: 462 HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG 521
RVI+F+ R + + + L G+ +F+GQS S G +Q QQ LE FRAG
Sbjct: 374 --RVIVFTESRDTAETLTDFL---GEHFSVEKFVGQSDTDGSDGMTQTEQQETLEAFRAG 428
Query: 522 GYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ V+V+TS+ EEGLD+ EVDLV+ ++ + +R IQR GRTGR+ +G +
Sbjct: 429 EFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQTEGAV 478
>gi|170516811|gb|ACB15213.1| ATP-dependent RNA helicase EIF-4A family [uncultured marine group
II euryarchaeote DeepAnt-15E7]
Length = 596
Score = 196 bits (497), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 145/482 (30%), Positives = 242/482 (50%), Gaps = 32/482 (6%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P + R YQ T AL + ++ LPT GKT++A +VI + G ++ AP+
Sbjct: 10 LTPGLIEARAYQLEATDEALSGSMMLVLPTAAGKTVVAWMVIADRLE-SRRGWVLMIAPT 68
Query: 163 RPLVMQQIEACHNIVGIPQEWT-IDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
LV Q + +++ I +TGQ KRA+ W + R+ TPQV+ D+ G
Sbjct: 69 VALVEQHLRGIKSVLSDSASVNPISVTGQNPVAKRATLWGSSRLVIATPQVVRNDVTRGV 128
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+ LV+DEAH ATGN+A +S + +LA TA+PGSK ++ I + L
Sbjct: 129 LDLSDCSLLVVDEAHHATGNHAMAQVGDMYLSQTSEPLVLATTASPGSKNNQVEEICNRL 188
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
I + + +D V+ ++ +I+ ++V + N+I E+ P S I +
Sbjct: 189 GIGRIHLKTGADAMVAQHLAGLEIQEVKVR-------VPNQIREIAEPLVMWQSGIVDRE 241
Query: 342 NRDYQTLSP-----VDLLNSRDKFRQAPPPNLPQIKFGEVEAY-----FGALITLYHIRR 391
R + + P L N+ ++ +QA I GE AY + L+H+
Sbjct: 242 RRLGRYVIPGLISHAGLSNAMERAQQA-------ISRGESSAYQSVSRIATAMRLHHLIN 294
Query: 392 LLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLL-MQQSISH-GAQSPKLSKMLE 449
L G+ + E LE +L + ++ S +R ++ +++S+S G K+S +
Sbjct: 295 HLLCQGVAASSEFLE-RLSRSEQSQNKSTRNFLRDGRVSSLRKSLSEMGEIHTKVSAVRR 353
Query: 450 VLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQK 509
++ + + +SR+I+F+ FR +V + +L + D + +F+GQSS + G + K
Sbjct: 354 LVSERLRRNS--NSRIIVFATFRDTVAAVEKSLDEL-DGARPIQFVGQSSREGRDGLTPK 410
Query: 510 VQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDG 569
Q L+KFR+G N++VATS+GEEGLDI DLVI ++ S +R IQR GRTGR +G
Sbjct: 411 QQIERLDKFRSGSANILVATSVGEEGLDIPSADLVIFYEPVSSEIRTIQRRGRTGRHREG 470
Query: 570 RI 571
+
Sbjct: 471 EV 472
>gi|155212870|gb|ABT17431.1| probable ATP-dependent helicase [Halorubrum sp. TP009]
Length = 477
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 130/445 (29%), Positives = 213/445 (47%), Gaps = 23/445 (5%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + A +TLV LPTGLGKT ++ +V GK +F AP++PLV Q
Sbjct: 21 RRYQLQLADAAADEHTLVCLPTGLGKTTVSLLVTAERLHQ-AGGKALFLAPTKPLVQQHA 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + +P + + TG + P RA+ W R+ TPQV+E D+ ++ + L
Sbjct: 80 DFYREALSVPDDEIVVFTGDVKPDDRAALWDDARIVIATPQVVENDLVGNRISLRDVTHL 139
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
DE HRATG+YAY + + ++A+PG + I+ + +NL + +E
Sbjct: 140 TFDECHRATGDYAYVYIAERYHADAADPLVTGMSASPGGDTEEIETVCENLGLVNVEVMT 199
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
E D DV Y H+ ++ +V + E ++I + + EVI +L +G+ N LS
Sbjct: 200 EEDADVDEYTHDTDVQWEQVTLPDEVLDIRDALNEVITDRLEKLKQLGV-TNTTNPDLSQ 258
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA-----LITLYHIRRLL---SSHGIRPAY 402
DL R + +Q + + + Y G ++ L L+ S +R +
Sbjct: 259 KDLNKMRGQLKQ-------MMDNDQSDGYKGMSTHAEVMKLRRATELVETQSVESVRRYF 311
Query: 403 EMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462
E E + ++ + KV+ M+++ S PK SK +L + +
Sbjct: 312 ERQREAARSSGASKASQRMVADPKVREAMRKAESFDGLHPKFSKARILLAETLGINGGE- 370
Query: 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG 522
R I+F+ R + ++ L+ D+ K F+GQ + S G SQ QQ L++F+ G
Sbjct: 371 -RAILFTESRDTAEALVEFLSASFDVRK---FVGQGDKEGSDGMSQTQQQETLDEFKNGE 426
Query: 523 YNVIVATSIGEEGLDIMEVDLVICF 547
+ V+V+TS+ EEGLD+ EVDLV CF
Sbjct: 427 FEVLVSTSVAEEGLDVPEVDLV-CF 450
>gi|297619461|ref|YP_003707566.1| ERCC4 domain-containing protein [Methanococcus voltae A3]
gi|297378438|gb|ADI36593.1| ERCC4 domain protein [Methanococcus voltae A3]
Length = 822
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 153/478 (32%), Positives = 239/478 (50%), Gaps = 38/478 (7%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
+I + R YQ I AL +NTL L TGLGKT IA + I GK + AP
Sbjct: 20 FIKKNKIQARIYQQMIVANALKTNTLCVLGTGLGKTAIATLTIAGILHK-KGGKALIIAP 78
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
SRPLV Q E+ + +P++ + + G++ P KR W+ R+F TPQV+E DI +
Sbjct: 79 SRPLVEQHFESLKKFLNVPEDEILILNGKVQPLKRQELWENGRIFISTPQVVENDIIATR 138
Query: 222 CLMKYLVCLVIDEAHRATGNYAYC---TAIRELMSVPVQLRILALTATPGSKQQTIQHII 278
LV DEAH +TGN++Y RE + +L LTA+PGS + I +
Sbjct: 139 LNPNDFSILVADEAHHSTGNHSYTFVGNVFRE------KTHVLGLTASPGSNIERILEVC 192
Query: 279 DNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIG 338
+NL I +E R E D DV Y+ K++ V++ E E + + + RL
Sbjct: 193 ENLGIEHVEIRTEDDLDVKQYIAKAKLKPKRVDLPDEYTE---ALKLLKKSLNERLKV-- 247
Query: 339 LLQNRDYQTL--SPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSH 396
L +N T+ + DLL K N Q+ EA I + ++ L +
Sbjct: 248 LKENNVIYTINVNKTDLLILNKKIMMMDDKNKFQLLKINSEA-----IKIDYLIETLETQ 302
Query: 397 GIRPAYEMLEEKL--KQGSFARFMSKNEDIRK-VKLLMQQSISHGAQSPKLSKMLEVLVD 453
G + A+ +KL + A+ + +++DI+K V + + I H PKL +L+V+ +
Sbjct: 303 G-KDAFLNYYDKLASQNTKSAKEIYRDKDIKKIVNSINETDIEH----PKLDTLLDVVSE 357
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
K+ +VI+F+ +R +V I+ +L ++A F+GQS+ K KG SQK Q
Sbjct: 358 AVAQKE----KVIVFAQYRDTVSKIVESLKEQD--IEALMFVGQSN-KDGKGMSQKEQSK 410
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ KF++ +V+V+TS+ EEG+DI V+ V+ ++ S +R IQR GR R G +
Sbjct: 411 AIAKFKS-DIDVLVSTSVSEEGMDISAVNYVVFYEPVPSEIRFIQRRGRVMRGEGGEV 467
>gi|218185363|gb|EEC67790.1| hypothetical protein OsI_35348 [Oryza sativa Indica Group]
Length = 765
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 200/662 (30%), Positives = 293/662 (44%), Gaps = 134/662 (20%)
Query: 549 ANVSPLRMIQRMGRTGRKHDG--RIPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPI 606
N ++ + R R HD +PH++ PEV+FVELSIE+Y+ KK K D + +PI
Sbjct: 9 GNTKTMKKLLRDRRRFEYHDSPRMVPHVYNPEVKFVELSIEKYIPCSKKSKVDVNVASPI 68
Query: 607 FKEKLTAAETDLIAKYFHPTSDSTWRPSLIAFPHFQALPSRVHKVMHSFRT-GMLIDMMQ 665
F K++ + LIA+YF + W+PSL+ FP FQ P +++V HSFRT MLID MQ
Sbjct: 69 FN-KMSEDDGRLIARYFGACKEDFWKPSLVTFPSFQVSPCDIYRVPHSFRTTNMLIDAMQ 127
Query: 666 HLQGLTFSRD----------DRTFVEDEVSSDKHLGLQTVEPCETDERDNFHGTKKVTDS 715
LQ L+FSR D V DE GL + G+K+V
Sbjct: 128 QLQDLSFSRTKCASPLEGPADVPVVMDEAPE----GLFGAD-----------GSKEVIPQ 172
Query: 716 ELSTRTLGTQE-----NHSMPQSCCKSPAAHAYLFGSDFISVDALGKVLIISVPALPFKE 770
E + + E N +P S K H++ F D++++D G V I VPALP
Sbjct: 173 EYCGLEVLSGEAAWSKNVLVPSSPIKKYPVHSF-FSGDYVAMDVSGYVSITFVPALPRTS 231
Query: 771 LSHSKKKRAPDTLLLNHWKQDSSPLKTSDK---NYDELTVQSKAVEELTTSQAACIKD-- 825
H + +W Q TS K + T++ + S + D
Sbjct: 232 EFHKDARNV-------NWHQKVQNKTTSVKLAADISRPTIEFDCLAGFAYSSKPILTDEF 284
Query: 826 GALPIS-----RFCRSD------ALPEKPLDGFEEILDSPVLRRNQLREEDTTDETLDVN 874
G P S R+ R+D P K L +EI P +
Sbjct: 285 GLAPHSPEYTERYGRTDDRHVHGTPPPKTLVSPKEICHRPCNSK---------------- 328
Query: 875 EIKEPLSPDDEYHNDLRDSELSPRLTNLIKSGVVPESPINENGASN---NKGRNPDL--- 928
P+SP D+ ELSPRLT I+ G+VPESP+ E G + + N D
Sbjct: 329 ----PVSPGLSGQEDM---ELSPRLTYYIEEGIVPESPMLEVGHKHLETDSAANADFVQQ 381
Query: 929 -----------ASPVKLCSIQ-PSKFASLGK--TEKCSKYVRASQGNVSISPVNKKIQTP 974
A +L S P F G+ +E V + + + NK+ +
Sbjct: 382 KVDFSKSNCEGAKANELKSRNGPLNFEGKGQFFSEISKLAVSPGENALDQTQANKEERM- 440
Query: 975 LLKMNHTASAGGYSPTSPIAEETKTPLANLANSSCSRDWRL-SSGDKSENVEPARKFKRL 1033
H ++ +SP++ TP+ANL S S DW+L S GD +V A K+KRL
Sbjct: 441 -----HPSNVKIHSPSA------HTPMANLLCDSFSDDWQLRSGGDTPGSVREAPKYKRL 489
Query: 1034 RKVRDCEQNKNSENMKEN---AVAPVVNLARRFLGMSPIQNKHGRGRKKPMDNMREYIEE 1090
K D + +S ++ + A N A + R +++ + +I++
Sbjct: 490 CKYADKIKRVSSMSLDDRYDIAAGGNHNFATK------------RNKRRAKMCLDTFIDD 537
Query: 1091 EAEVSSEAEVSDDEEDDEDNNSYDDSFIDDRMNPTATSTQA----ESSGVDMMAIYRFLL 1146
EAEVS +A+VS DE +D ++Y+DSFI+D+ PT TQ+ E+SG DMMA YR L
Sbjct: 538 EAEVSEDADVSADEGNDHSEDNYEDSFINDQATPTGQFTQSVHRGENSG-DMMAFYRRSL 596
Query: 1147 LS 1148
L+
Sbjct: 597 LT 598
>gi|401885753|gb|EJT49841.1| member of the DEAH family of helicase [Trichosporon asahii var.
asahii CBS 2479]
Length = 1118
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 133/438 (30%), Positives = 215/438 (49%), Gaps = 51/438 (11%)
Query: 148 FRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFF 207
FRWFP GKIVF AP++PLV QQIEAC GIP + + G +S +R RVF+
Sbjct: 235 FRWFPSGKIVFMAPTKPLVNQQIEACQLTCGIPHDAAAVINGSVSSVERDRL----RVFY 290
Query: 208 VTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267
TPQ L+ D++ G + +V V+ +V R+LALTATP
Sbjct: 291 CTPQTLQNDLERGAIDARDIVLAVV--------------------AVSPYFRVLALTATP 330
Query: 268 GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVI 327
G+K +Q ++D L+IS +E R +++ Y + +++EL + + + R E++
Sbjct: 331 GNKVDKVQGVVDGLHISRIEIREAESPEITQYTNEKRVELHTIPVEGVVRDTMRRWAELM 390
Query: 328 RPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAY--FGALIT 385
P RL D L+P DL +R + P Q K E+ + F +
Sbjct: 391 HPLLKRLV--------DKNVLTPRDLDATRLR------PFTVQAKLMELGRHPQFKWIWG 436
Query: 386 -LYHIRRLLSS--HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSP 442
+ +R++ ++ H + + EK Q S A S ++ + ++ + +
Sbjct: 437 PMQQVRQMAAAMQHLLEYSLGTFHEKALQMSGA---SNDKGKKGNSRGGANALHNNREYQ 493
Query: 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGK- 501
L +E ++ K +R + + ++ ++AL L++ T F+GQS GK
Sbjct: 494 MLMTDVETALNEIKGGREGKTRADLHPKMKKTLD--LDALNDHPGLLRPTRFVGQSDGKK 551
Query: 502 -ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+G QK Q+ + F+ G +N++V+TS+GEEGLDI EVD +I +D ++ IQR+
Sbjct: 552 AGDRGLRQKDQKQAIADFKEGKFNILVSTSVGEEGLDIGEVDFIILYDMPQQSIKQIQRI 611
Query: 561 GRTGRKHDGRIPHIFKPE 578
GRTGRK DG I H+ E
Sbjct: 612 GRTGRKRDG-IVHVLMTE 628
>gi|406695545|gb|EKC98848.1| member of the DEAH family of helicase, Mph1p [Trichosporon asahii
var. asahii CBS 8904]
Length = 1118
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 133/438 (30%), Positives = 215/438 (49%), Gaps = 51/438 (11%)
Query: 148 FRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFF 207
FRWFP GKIVF AP++PLV QQIEAC GIP + + G +S +R RVF+
Sbjct: 235 FRWFPSGKIVFMAPTKPLVNQQIEACQLTCGIPHDAAAVINGSVSSVERDRL----RVFY 290
Query: 208 VTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267
TPQ L+ D++ G + +V V+ +V R+LALTATP
Sbjct: 291 CTPQTLQNDLERGAIDARDIVLAVV--------------------AVSPYFRVLALTATP 330
Query: 268 GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVI 327
G+K +Q ++D L+IS +E R +++ Y + +++EL + + + R E++
Sbjct: 331 GNKVDKVQGVVDGLHISRIEIREAESPEITQYTNEKRVELHTIPVEGVVRDTMRRWAELM 390
Query: 328 RPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAY--FGALIT 385
P RL D L+P DL +R + P Q K E+ + F +
Sbjct: 391 HPLLKRLV--------DKNVLTPRDLDATRLR------PFTVQAKLMELGRHPQFKWIWG 436
Query: 386 -LYHIRRLLSS--HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSP 442
+ +R++ ++ H + + EK Q S A S ++ + ++ + +
Sbjct: 437 PMQQVRQMAAAMQHLLEYSLGTFHEKALQMSGA---SNDKGKKGNSRGGANALHNNREYQ 493
Query: 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGK- 501
L +E ++ K +R + + ++ ++AL L++ T F+GQS GK
Sbjct: 494 MLMTDVETALNEIKGGREGKTRADLHPKMKKTLD--LDALNDHPGLLRPTRFVGQSDGKK 551
Query: 502 -ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+G QK Q+ + F+ G +N++V+TS+GEEGLDI EVD +I +D ++ IQR+
Sbjct: 552 AGDRGLRQKDQKQAIADFKEGKFNILVSTSVGEEGLDIGEVDFIILYDMPQQSIKQIQRI 611
Query: 561 GRTGRKHDGRIPHIFKPE 578
GRTGRK DG I H+ E
Sbjct: 612 GRTGRKRDG-IVHVLMTE 628
>gi|222615622|gb|EEE51754.1| hypothetical protein OsJ_33187 [Oryza sativa Japonica Group]
Length = 765
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 199/662 (30%), Positives = 292/662 (44%), Gaps = 134/662 (20%)
Query: 549 ANVSPLRMIQRMGRTGRKHDG--RIPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPI 606
N ++ + R R HD +PH++ PEV+FVELSIE+Y+ KK K D + +PI
Sbjct: 9 GNTKTMKKLLRDRRRFEYHDSPRMVPHVYNPEVKFVELSIEKYIPCSKKSKVDVNVASPI 68
Query: 607 FKEKLTAAETDLIAKYFHPTSDSTWRPSLIAFPHFQALPSRVHKVMHSFRT-GMLIDMMQ 665
F K++ + LIA+YF + W+PSL+ FP FQ P +++V HSFRT MLID MQ
Sbjct: 69 FN-KMSEDDGRLIARYFGACKEDFWKPSLVTFPSFQVSPCDIYRVPHSFRTTNMLIDAMQ 127
Query: 666 HLQGLTFSRD----------DRTFVEDEVSSDKHLGLQTVEPCETDERDNFHGTKKVTDS 715
LQ L+FSR D V DE GL + G+K+V
Sbjct: 128 QLQDLSFSRTKCASPLEGPADVPVVMDEAPE----GLFGAD-----------GSKEVIPQ 172
Query: 716 ELSTRTLGTQE-----NHSMPQSCCKSPAAHAYLFGSDFISVDALGKVLIISVPALPFKE 770
E + + E N +P K H++ F D++++D G V I VPALP
Sbjct: 173 EYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSF-FSGDYVAMDVSGYVSITFVPALPRTS 231
Query: 771 LSHSKKKRAPDTLLLNHWKQDSSPLKTSDK---NYDELTVQSKAVEELTTSQAACIKD-- 825
H + +W Q TS K + T++ + S + D
Sbjct: 232 EFHKDARNV-------NWHQKVQNKTTSVKLAADISRPTIEFDCLAGFAYSSKPILTDEF 284
Query: 826 GALPIS-----RFCRSD------ALPEKPLDGFEEILDSPVLRRNQLREEDTTDETLDVN 874
G +P S R+ R+D P K L +EI P +
Sbjct: 285 GLVPHSPEYTERYGRTDDRHVHGTPPPKTLVSPKEICHKPCNSK---------------- 328
Query: 875 EIKEPLSPDDEYHNDLRDSELSPRLTNLIKSGVVPESPINENGASN---NKGRNPDL--- 928
P+SP D+ ELSPRLT I+ G+VPESP+ E G + + N D
Sbjct: 329 ----PVSPGLSGQEDM---ELSPRLTYYIEEGIVPESPMLEVGHKHLETDSAANADFVQQ 381
Query: 929 -----------ASPVKLCSIQ-PSKFASLGK--TEKCSKYVRASQGNVSISPVNKKIQTP 974
A +L S P F G+ +E V + + + NK+ +
Sbjct: 382 KVDFSKSHSEGAKANELKSRNGPLNFEGKGQFFSEISKLAVSPGENALDQTQANKEERM- 440
Query: 975 LLKMNHTASAGGYSPTSPIAEETKTPLANLANSSCSRDWRL-SSGDKSENVEPARKFKRL 1033
H ++ +SP + TP+ANL S S DW+L S GD +V A K+KRL
Sbjct: 441 -----HPSNVKIHSPAA------HTPMANLLCDSFSDDWQLRSGGDTPGSVREAPKYKRL 489
Query: 1034 RKVRDCEQNKNSENMKEN---AVAPVVNLARRFLGMSPIQNKHGRGRKKPMDNMREYIEE 1090
K D + +S ++ + A N A + R +++ + +I++
Sbjct: 490 CKYADKIKRVSSMSLDDRYDIAAGGNHNFATK------------RNKRRAKMCLDTFIDD 537
Query: 1091 EAEVSSEAEVSDDEEDDEDNNSYDDSFIDDRMNPTATSTQA----ESSGVDMMAIYRFLL 1146
EAEVS +A+VS DE +D ++Y+DSFI+D+ PT TQ+ E+SG DMMA YR L
Sbjct: 538 EAEVSEDADVSADEGNDHSEDNYEDSFINDQATPTGQFTQSVHHGENSG-DMMAFYRRSL 596
Query: 1147 LS 1148
L+
Sbjct: 597 LT 598
>gi|118576367|ref|YP_876110.1| ERCC4-like helicase [Cenarchaeum symbiosum A]
gi|118194888|gb|ABK77806.1| ERCC4-like helicase [Cenarchaeum symbiosum A]
Length = 558
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 143/475 (30%), Positives = 230/475 (48%), Gaps = 40/475 (8%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK-IVFAA 160
++ P V RDYQ + + A+ N +V LPTGLGKT +A VI ++ +G+ +F A
Sbjct: 65 YVEPGAVERRDYQVGLAEQAIRENCIVVLPTGLGKTAVALQVISHYL---DEGRGALFLA 121
Query: 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
P+R LV Q + + I + T+ +TG+ + +R W V TP++ DI G
Sbjct: 122 PTRVLVNQHRQFLGRALTI-SDITL-VTGEDTVPRRKKAWGGS-VICATPEITRNDIARG 178
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDN 280
++ +V DEAHRA G+YAY R +V R++ +TAT S+++ I+
Sbjct: 179 MVPLEQFGLVVFDEAHRAVGDYAYSAIAR---AVGENSRMIGMTATLPSEREKADEIMGT 235
Query: 281 LYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIG-- 338
L ++ R E D DV YV + E I+VE+ E EI + + + L G
Sbjct: 236 LLSKSIAQRTEDDPDVKPYVQETETEWIKVELPPEMKEIQKLLKMALDERYAALKRCGYD 295
Query: 339 LLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGI 398
L NR L + ++ R A P F A+ Y + + +HG+
Sbjct: 296 LGSNRSLSALLRLRMVVLSGNRRAAKP-------------LFTAIRITYALN-IFEAHGV 341
Query: 399 RPAYEMLEEKLKQ--GSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFK 456
P + E +K+ A ++ + + + + G + PK+ K+ E +
Sbjct: 342 TPFLKFCERTVKKKGAGVAELFEEDRNFTGAMARAKAAQAAGMEHPKIPKLEEAV----- 396
Query: 457 TKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLE 516
+ ++F+++R SV I + L G + + IG++ KG QK Q +
Sbjct: 397 --RGAKGKALVFTSYRDSVDLIHSKLQAAG--INSGILIGKA---GEKGLKQKKQVETVA 449
Query: 517 KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
KFR GGY+V+V+T +GEEGLDI EV+LV+ +D S +R +QR GRTGRK G++
Sbjct: 450 KFRDGGYDVLVSTRVGEEGLDISEVNLVVFYDNVPSSIRYVQRRGRTGRKDAGKL 504
>gi|3599385|gb|AAC62691.1| ATP-dependent RNA helicase [Cenarchaeum symbiosum]
Length = 503
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 143/475 (30%), Positives = 230/475 (48%), Gaps = 40/475 (8%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK-IVFAA 160
++ P V RDYQ + + A+ N +V LPTGLGKT +A VI ++ +G+ +F A
Sbjct: 10 YVEPGAVERRDYQVGLAEQAIRENCIVVLPTGLGKTAVALQVISHYL---DEGRGALFLA 66
Query: 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
P+R LV Q + + I + T+ +TG+ + +R W V TP++ DI G
Sbjct: 67 PTRVLVNQHRQFLGRALTI-SDITL-VTGEDTVPRRKKAWGGS-VICATPEITRNDIARG 123
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDN 280
++ +V DEAHRA G+YAY R +V R++ +TAT S+++ I+
Sbjct: 124 MVPLEQFGLVVFDEAHRAVGDYAYSAIAR---AVGENSRMIGMTATLPSEREKADEIMGT 180
Query: 281 LYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIG-- 338
L ++ R E D DV YV + E I+VE+ E EI + + + L G
Sbjct: 181 LLSKSIAQRTEDDPDVKPYVQETETEWIKVELPPEMKEIQKLLKMALDERYAALKRCGYD 240
Query: 339 LLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGI 398
L NR L + ++ R A P F A+ Y + + +HG+
Sbjct: 241 LGSNRSLSALLRLRMVVLSGNRRAAKP-------------LFTAIRITYALN-IFEAHGV 286
Query: 399 RPAYEMLEEKLKQ--GSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFK 456
P + E +K+ A ++ + + + + G + PK+ K+ E +
Sbjct: 287 TPFLKFCERTVKKKGAGVAELFEEDRNFTGAMARAKAAQAAGMEHPKIPKLEEAV----- 341
Query: 457 TKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLE 516
+ ++F+++R SV I + L G + + IG++ KG QK Q +
Sbjct: 342 --RGAKGKALVFTSYRDSVDLIHSKLQAAG--INSGILIGKA---GEKGLKQKKQVETVA 394
Query: 517 KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
KFR GGY+V+V+T +GEEGLDI EV+LV+ +D S +R +QR GRTGRK G++
Sbjct: 395 KFRDGGYDVLVSTRVGEEGLDISEVNLVVFYDNVPSSIRYVQRRGRTGRKDAGKL 449
>gi|3599409|gb|AAC62714.1| ATP-dependent RNA helicase [Cenarchaeum symbiosum]
Length = 502
Score = 182 bits (463), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 144/475 (30%), Positives = 230/475 (48%), Gaps = 40/475 (8%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK-IVFAA 160
+I P V RDYQ + + A+ N +V LPTGLGKT +A VI ++ +G+ +F A
Sbjct: 10 YIEPGAVERRDYQVGLAEQAIRENCIVVLPTGLGKTAVALQVIAHYL---DEGRGALFLA 66
Query: 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
P+R LV Q + + I + T+ +TG+ + +R W V TP++ DI+ G
Sbjct: 67 PTRVLVNQHRQFLGRALTI-SDITL-VTGEDTIPRRKKAWGGS-VICATPEIARNDIERG 123
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDN 280
++ ++ DEAHRA G+YAY + R +V R++ +TAT S+++ I+
Sbjct: 124 LVPLEQFGLVIFDEAHRAVGDYAYSSIAR---AVGDNSRMVGMTATLPSEREKADEIMGT 180
Query: 281 LYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIG-- 338
L ++ R E D DV YV E I+V++ E EI + + S L G
Sbjct: 181 LLSRSIAQRTEDDPDVKPYVQETATEWIKVDLPPEMKEIQRLLKLALDERYSSLKRCGYD 240
Query: 339 LLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGI 398
L NR L + ++ R A P F A+ Y + + +HG+
Sbjct: 241 LGSNRSLSALLRLRMVVLGGNRRAAKP-------------LFTAIRITYALN-IFEAHGV 286
Query: 399 RPAYEMLEE--KLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFK 456
P + E K K A ++ + + + + G + PK+ K+ + +
Sbjct: 287 TPFLKFCERTSKKKGVGVAELFEQDRNFTGAIARAKAAQAAGMEHPKIPKLEDAV----- 341
Query: 457 TKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLE 516
+ ++F+++R SV I + L G + + IG++ KG Q+ Q +
Sbjct: 342 --RGARGKALVFTSYRDSVDLIHSRLKAAG--INSGILIGKA---GEKGLKQRKQVETVA 394
Query: 517 KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
KFR GGY+V+V+T +GEEGLDI EV+LVI +D S +R +QR GRTGRK GR+
Sbjct: 395 KFRDGGYDVLVSTRVGEEGLDISEVNLVIFYDNVPSSIRYVQRRGRTGRKDAGRL 449
>gi|374724263|gb|EHR76343.1| ATP-dependent RNA helicase EIF-4A family [uncultured marine group
II euryarchaeote]
Length = 881
Score = 182 bits (463), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 140/481 (29%), Positives = 238/481 (49%), Gaps = 24/481 (4%)
Query: 101 TWIYPV---NVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
T ++P V R YQ K+AL S+TL+ +PTG GKT + + + R GK++
Sbjct: 3 TVVHPFLKDGVQARAYQMKSLKSALTSSTLMVMPTGFGKTAVEWMAMAEALR-LKRGKVL 61
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
AP+ LV QQ ++ + + + TG++ P KR W +V T QV+ D
Sbjct: 62 LIAPTTGLVDQQRRMATEMLNLDADAIVSYTGEVGPAKRPPLWAKGQVVMATSQVIRNDA 121
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
+G + + L++DEAH +TGN+AY +S +L TA+PGS + I +
Sbjct: 122 VNGIIDLTEVGLLIVDEAHHSTGNHAYAQVGDLYLSAKPDALVLGATASPGSTEANILEV 181
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELI--EVEMGQEAVEINNRIWEVIRPYTSRLS 335
L I L+ + D ++ Y K+E + + + +E + + I L
Sbjct: 182 ARRLGIERLDVSKKEDPLLTPY--TVKLETVPHRLPLPEELLALLAPIQAQQDDEAEHLR 239
Query: 336 AIGLLQNRDYQTLSPVDLLNSR---DKFRQAPPPNLPQIKFG-EVEAYFGALITLYHIRR 391
+G L+P L+S+ + R+A + + G + G L + +
Sbjct: 240 RLGF--------LAPTGHLSSKFIEEAQRRASMAIQRRDRRGYDAARRIGDLRRAHLLLD 291
Query: 392 LLSSHGIRPAYEMLEEKLKQG-SFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEV 450
LL + G+ A L+ + G S R ++ + + + + + G + PK + + +
Sbjct: 292 LLRTQGVTSALAFLQRAEEDGRSGERSTNRFVGLPAIHEFRRAAKAMGERHPKPAYVRQ- 350
Query: 451 LVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKV 510
LV++ +T +P+ S+++IF+ +R +V ++ +L I ++ +FIGQS KG +Q+
Sbjct: 351 LVENQRTTNPE-SKMLIFTEYRDTVDHLVESLTAIPG-IQVDKFIGQSGKGKRKGMTQRQ 408
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
Q A L +FR G NV+VATS+GEEGLD+ DLVI ++ S +R IQR GRT R+ DG
Sbjct: 409 QLAQLNRFRDGELNVLVATSVGEEGLDVPAADLVILYEPVASAIRAIQRRGRTARQRDGS 468
Query: 571 I 571
+
Sbjct: 469 V 469
>gi|150400569|ref|YP_001324335.1| Hef nuclease [Methanococcus aeolicus Nankai-3]
gi|150013272|gb|ABR55723.1| DEAD/DEAH box helicase domain protein [Methanococcus aeolicus
Nankai-3]
Length = 808
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 150/494 (30%), Positives = 235/494 (47%), Gaps = 44/494 (8%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIV 157
I P + R YQ + AL NTL L TGLGKT IA + I + K++
Sbjct: 7 LIKPNTMEARIYQQTMVANALRKNTLCVLGTGLGKTAIATLTIAGILSKNNNKNINKKVL 66
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
APSRPLV Q + + IP++ + +TG+I+P KR W+ ++F TPQ++E DI
Sbjct: 67 IIAPSRPLVEQHYNSLKTFLNIPEDKIVVLTGKIAPAKRQKIWEEGKIFIATPQIVENDI 126
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHI 277
+ L+ DEAH TGN++Y + + IL LTA+PGS + I +
Sbjct: 127 VANRVNTDDFALLIADEAHHTTGNHSYSFVASVFRN---KSHILGLTASPGSNIEKILEV 183
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337
NL I +E R D DV YV K+ I+VE+ +E E N + + +++ +
Sbjct: 184 CKNLGIEHVEIRTIDDIDVKEYVQTVKLRPIKVELPKEFAECINLLKQ------AQMERL 237
Query: 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397
+L RD++ + ++ + Q + E+ I L + L G
Sbjct: 238 KIL--RDHKIIYSTNVNKTELLQLQKRIMVIEDNSKYELIKIASEAIKLDYAIETLECQG 295
Query: 398 IRPAYEMLEEKL--KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF 455
+ A+ E+L + A+ + K+ + KV ++ + + PK K+LEV+ D
Sbjct: 296 -KEAFLNYYERLSSQDTKSAKAIIKDSKVLKVAYSLRTT---ELEHPKTEKLLEVVNDVL 351
Query: 456 -------------------KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIG 496
+++ IIF+ +R +V I+N L + G ++A F+G
Sbjct: 352 NKEEGKKEKKNTKKKNTNNTNNIDNNNKTIIFAQYRDTVEKIVNLLNSNG--IQAIPFVG 409
Query: 497 QSSGKASKGQSQKVQQAVLEKFRAG-GYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
QS+ K KG SQK Q +EKF+ NV+V+TS+ EEG+DIM V+ VI ++ S +R
Sbjct: 410 QSN-KDGKGMSQKKQIEAVEKFKNDPAVNVLVSTSVSEEGIDIMSVNFVIFYEPVPSEIR 468
Query: 556 MIQRMGRTGRKHDG 569
IQR GR R G
Sbjct: 469 FIQRRGRASRGEGG 482
>gi|77024937|gb|ABA61364.1| ATP-dependent RNA helicase [uncultured marine group II
euryarchaeote HF70_59C08]
Length = 878
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 137/461 (29%), Positives = 224/461 (48%), Gaps = 28/461 (6%)
Query: 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167
+ R YQ + L ++TL+ LPTG+GKT I + + + P G+ + AP+ LV
Sbjct: 15 IEARAYQLSALDHCLSASTLLVLPTGMGKTPIEVMALAERLKQ-PGGRGIMLAPTNALVN 73
Query: 168 QQIEACHNIVGIP-QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKY 226
Q + ++ +P Q+ + +TG I P KR W+ + TPQV+ D+Q+G +
Sbjct: 74 QHLSDMRALLNLPEQQDIVALTGSIPPKKRREIWEAATIVIATPQVVRNDVQNGLTHLSD 133
Query: 227 LVCLVIDEAHRATGNYAYCTAIRELMSV--PVQLRILALTATPGSKQQTIQHIIDNLYIS 284
+ L+IDEAHRA GN+A + +L + P L +LA TA+PG + I + + L I
Sbjct: 134 VALLIIDEAHRANGNHAMAQ-VGDLFAEQHPDGL-VLAATASPGHIEAEINEVCERLRIE 191
Query: 285 TLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRD 344
+ R D ++ Y ++ + VE+ E + N + + RL +G +
Sbjct: 192 NIHVRPPGDALLAPYATGLEVNDVVVEVPDELRLLANPLQLWLSRIVERLRRLGFYTRQG 251
Query: 345 YQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYF-----GALITLYHIRRLLSSHGIR 399
+ T ++A I GE Y G + L H+ + G+
Sbjct: 252 HVTAG---------GLQEAQKRISASISKGESFGYRAAKENGIGMRLNHLISSILCQGVA 302
Query: 400 PAYEMLEEKLKQGSFARFMSKNE---DIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFK 456
E L ++ QG S E D R V+L + +++ + M+ +V +
Sbjct: 303 ATRETLS-RIGQGGQDEKKSAREFAADPRIVQL--KDTLAEMNEIHSKVTMVRRMVRR-Q 358
Query: 457 TKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLE 516
K+ SR+I+F+NFR +V +I L+ + + V F+GQ+S + S G SQK+Q L+
Sbjct: 359 LKESPDSRIIVFANFRDTVDEISRVLSDVENAVP-QRFVGQASREGSSGMSQKMQLESLD 417
Query: 517 KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
FR+G NV+VATS+GEEGLD+ DLVI ++ S +R I
Sbjct: 418 TFRSGEANVLVATSVGEEGLDVPNADLVIFYEPVGSEIRTI 458
>gi|147857336|emb|CAN79194.1| hypothetical protein VITISV_000236 [Vitis vinifera]
Length = 1210
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/129 (65%), Positives = 101/129 (78%), Gaps = 6/129 (4%)
Query: 219 SGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHII 278
+G CL+KYLVCLVIDEAHRA GNY+YCTA+RE P + +KQQ+IQ+II
Sbjct: 57 NGICLVKYLVCLVIDEAHRALGNYSYCTAVREKFLEPY------VKGNYPAKQQSIQNII 110
Query: 279 DNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIG 338
DNL+ISTLEYRNESD DVS YVHNR +ELIEV MGQ+A+EINN + EVIRP+ RL A+G
Sbjct: 111 DNLHISTLEYRNESDHDVSPYVHNRNVELIEVAMGQDAIEINNVLLEVIRPFVIRLCAVG 170
Query: 339 LLQNRDYQT 347
+LQNRD QT
Sbjct: 171 VLQNRDLQT 179
>gi|161528452|ref|YP_001582278.1| DEAD/DEAH box helicase [Nitrosopumilus maritimus SCM1]
gi|160339753|gb|ABX12840.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus
SCM1]
Length = 502
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 145/480 (30%), Positives = 229/480 (47%), Gaps = 44/480 (9%)
Query: 100 KTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159
K ++ ++ RDYQ + A+ N +V LPTGLGKT IA VI + G + F
Sbjct: 7 KRYVKKDSIEKRDYQVNLANQAISENCIVVLPTGLGKTAIALQVIAEYLSKGTGGAL-FL 65
Query: 160 APSRPLVMQQIEACHNIVGIPQEWTID----MTGQISPTKRASFWKTKRVFFVTPQVLEK 215
AP+R LV Q E + + T+D +TG+ + KR W V TP++ +
Sbjct: 66 APTRVLVNQHYEF------LKENLTLDDISLITGEDTIQKRTKLWNNS-VICATPEIAKN 118
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
D+ G ++ DE HR G+YAY + I E V RI+ +TAT S++
Sbjct: 119 DLDRGIVSSNQFNLIIFDEVHRTVGDYAY-SGIAERF-VNSDGRIVGMTATLPSEKDKAT 176
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVI--RPYTSR 333
I+ L I+++ R E+ DV Y E I VE+ E I + + R T R
Sbjct: 177 EILTKLKIASVAERTENSPDVKPYTQETNTEWINVELPPELKTIQTLLKLALDQRYQTLR 236
Query: 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393
+ I L + + L + R A P F A I +++ +L
Sbjct: 237 DNGIKLAEQQSLSALLRIRQFVLNQNRRSAKP-------------LFTA-IRIHYALNIL 282
Query: 394 SSHGIRPAYEMLEE-KLKQGSFAR-FMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVL 451
+HGI P + E K K+G+ + + + + L +++ S G + K+ K+ +++
Sbjct: 283 EAHGITPFLKFCERAKAKKGAGVKELFEVDPNFTRAVHLAKEAQSRGIEHSKIPKLKDII 342
Query: 452 VDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQ 511
+ + +IF+++R SV I + L +G V A IG++ G QK Q
Sbjct: 343 -------ESVPGKALIFTSYRDSVDLIHSKLTELG--VSAGILIGKA---GETGLKQKKQ 390
Query: 512 QAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+++KFR G ++V++AT +GEEGLDI EV+ VI +D S +R IQR GRTGRK G++
Sbjct: 391 IEIVQKFRDGIFDVLIATRVGEEGLDIAEVNQVIFYDNVPSSVRFIQRRGRTGRKDTGKL 450
>gi|193083757|gb|ACF09444.1| ATP-dependent RNA helicase EIF-4A family [uncultured marine group
II euryarchaeote SAT1000-15-B12]
Length = 585
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 147/509 (28%), Positives = 236/509 (46%), Gaps = 59/509 (11%)
Query: 85 FDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI 144
+ +CH + +E + R YQ AL + ++ LPT GKT++A +VI
Sbjct: 1 MERRVCHPSLSSEV---------IEARAYQLEAADEALSGSMMLVLPTAAGKTVVAWMVI 51
Query: 145 YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWT-IDMTGQISPTKRASFWKTK 203
+ DG I+ AP+ LV Q + ++ + I +TGQ KR W +
Sbjct: 52 ADRIA-STDGWILMVAPTVALVEQHLRGIEPVLSDSETVNPISITGQNVVKKRVGMWGSS 110
Query: 204 RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILAL 263
R+ TPQV+ D+ G + LV+DE H ATG++A +S Q +LA
Sbjct: 111 RLVIATPQVVRNDVMRGVLDLSECSLLVVDEGHHATGDHAMAQVGDLYLSQASQPLVLAT 170
Query: 264 TATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI 323
TA+PGS+ + ++ + L I + R + +V H +E+ EV+ V + ++I
Sbjct: 171 TASPGSRTEQVEEVCSRLGIGRIHLR--TGGEVMLAKHLAGLEIHEVK-----VRVPDQI 223
Query: 324 WEVIRPYTSRLSAIGLLQNRDYQTLSP-----VDLLNSRDKFRQAPPPNLPQIKFGEVEA 378
++ P S I + R + + P L N+ ++ + A I GE A
Sbjct: 224 RKLAEPLVMWQSGIVDREKRLGRYVMPGNISYAGLSNAMERAQTA-------ISRGESSA 276
Query: 379 Y-----FGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQ 433
Y + L+H+ L G+ + E LE ++ +G + S +R ++
Sbjct: 277 YQSISQIATAMRLHHLINHLLCQGVAASSESLE-RMSRGEQSGTKSTRNFLRDPRV---- 331
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKH-----------SRVIIFSNFRGSVRDIMNAL 482
+ LS+M EV H K + SRVIIF+ +R +V + +L
Sbjct: 332 ----SSLRRSLSEMGEV---HTKVGAVRRLVLERLRRDVDSRVIIFATYRDTVAVVEKSL 384
Query: 483 ATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVD 542
+ + + +F+GQSS + G S K Q L++FR+G NV+VATS+GEEGLDI D
Sbjct: 385 KGL-EGARPVQFVGQSSREGRDGLSAKQQVERLDEFRSGAANVLVATSVGEEGLDIPSAD 443
Query: 543 LVICFDANVSPLRMIQRMGRTGRKHDGRI 571
LVI ++ S +R IQR GRTGR +G +
Sbjct: 444 LVIFYEPVPSEIRTIQRRGRTGRHREGEV 472
>gi|407462582|ref|YP_006773899.1| DEAD/DEAH box helicase [Candidatus Nitrosopumilus koreensis AR1]
gi|407046204|gb|AFS80957.1| DEAD/DEAH box helicase [Candidatus Nitrosopumilus koreensis AR1]
Length = 496
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 141/469 (30%), Positives = 217/469 (46%), Gaps = 44/469 (9%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + A+ N +V LPTGLGKT IA VI + G ++F AP+R LV Q
Sbjct: 18 RAYQVNLANQAISENCIVVLPTGLGKTAIALQVIAEYLST-GTGGVLFLAPTRVLVNQHY 76
Query: 171 EACHNIVGIPQEWTID----MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKY 226
E + + T+D +TG+ KR W V TP++ + D+ G
Sbjct: 77 EF------LKENLTLDDISLITGEDPIQKRTKLWNNS-VICATPEITKNDLDRGIVSSDQ 129
Query: 227 LVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTL 286
++ DE HR G+YAY + RI+ +TAT S++ I+ L I+++
Sbjct: 130 FNLVIFDEVHRTAGDYAYSGIAERFTNSSA--RIVGMTATLPSEKDKATEILTKLQIASV 187
Query: 287 EYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVI--RPYTSRLSAIGLLQNRD 344
R E DV Y E I VE+ E I + + R T R + I L + +
Sbjct: 188 AERTEDSPDVKPYTQETNTEWINVELPSELKSIQTLLKLALDQRYDTLRSNGIKLAEQQS 247
Query: 345 YQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEM 404
L + R A P F A I +++ +L +HG+ P +
Sbjct: 248 LSALLRIRQFVLNQNRRSAKP-------------LFTA-IRIHYALNILEAHGVTPFLKF 293
Query: 405 LEE-KLKQGSFAR-FMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462
E + K+G+ + + + + L +++ S G + K+ K+ +L D
Sbjct: 294 CERAQAKKGAGVKELFEIDPNFTRAIHLAKEAQSRGIEHSKIPKLKSIL-------DSVP 346
Query: 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG 522
+ +IF+++R SV I N L +G V A IG++ G QK Q ++KFR G
Sbjct: 347 GKTLIFTSYRDSVDLIFNKLTELG--VSAGILIGKA---GETGLKQKKQIETVQKFRDGV 401
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
++V++AT +GEEGLDI EV+ VI +D S +R IQR GRTGRK G++
Sbjct: 402 FDVLIATRVGEEGLDIAEVNQVIFYDNVPSSVRFIQRRGRTGRKDTGKL 450
>gi|47079403|gb|AAT10146.1| ATP-dependent RNA helicase [uncultured marine group II
euryarchaeote DeepAnt-JyKC7]
Length = 878
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 139/473 (29%), Positives = 220/473 (46%), Gaps = 31/473 (6%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ L +TL+ LPT GKT +A +V+ R DG + AP+ LV Q
Sbjct: 18 RAYQLEAVDETLSGSTLLVLPTAAGKTAVAWMVMAEMLR-RTDGWALMIAPTVALVKQHH 76
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ + M+G I KR S W R+ TPQV+ D+ G + L
Sbjct: 77 DGLVEAFSGQGIEAVAMSGAIPAAKRQSMWGRSRLVVSTPQVVRNDVIRGVLDLADCCVL 136
Query: 231 VIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRN 290
++DEAH TG ++ + IL +TA+PGS ++ + L + + R+
Sbjct: 137 IVDEAHHTTGERGEAQVADLYLASADEPLILGMTASPGSYVDRVEDVCRRLDVDRIHIRS 196
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNR--DYQTL 348
++ ++ ++ N IE + V + E I E+ P+ I + R Y
Sbjct: 197 GNEPMLAGHLANLAIEELRVAVPVE-------IRELAEPFVRWQEGIVDRERRLGRYVMS 249
Query: 349 SPV---DLLNSRDKFRQAPPPNLPQIKFGEVEAY-----FGALITLYHIRRLLSSHGIRP 400
P+ L N+ ++ A ++ GE +AY +TL+H+ L G
Sbjct: 250 GPITHAGLANAMERANSA-------VRRGESDAYRSMTQIALAMTLHHLINHLLCQGTAA 302
Query: 401 AYEMLEEKLKQGSFARFMSKN--EDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTK 458
A + L+ K + +KN D R ++ L + G K+ + ++ D +
Sbjct: 303 ARQFLDRKAGSEDVEKKSTKNLLRDAR-IRSLRKSLAEIGEIHSKVGAVRRLVRDRLRRD 361
Query: 459 DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518
+ +R+IIF+ FR SV + AL + D + +FIGQS ++ G + K Q A +E+F
Sbjct: 362 E--EARIIIFATFRDSVGALEKALTGLQD-CRPIQFIGQSRKSSAGGLTPKQQVARIEEF 418
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
R+G NV++ATS+GEEGLDI DLVI ++ S +R IQR GRTGR DG +
Sbjct: 419 RSGSANVLIATSVGEEGLDIPTADLVIFYEPVPSEIRTIQRRGRTGRHRDGDV 471
>gi|254169048|ref|ZP_04875886.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
boonei T469]
gi|197622018|gb|EDY34595.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
boonei T469]
Length = 381
Score = 174 bits (442), Expect = 2e-40, Method: Composition-based stats.
Identities = 120/382 (31%), Positives = 196/382 (51%), Gaps = 27/382 (7%)
Query: 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167
V R+YQ +I K+AL NTLV LPTGLGKT+IA +V+ DGKI+F AP++PLV
Sbjct: 13 VEEREYQVSIAKSALRGNTLVVLPTGLGKTIIAILVLVEVLEK-KDGKILFLAPTKPLVE 71
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYL 227
Q + + I E I +TG++S KR + + ++ TPQ+++ DI +G +
Sbjct: 72 QHAKTIKKLTKI--EEVIVLTGEVSRKKRKELYGSAKIVVATPQIIQNDIIAGELKIGDF 129
Query: 228 VCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLE 287
++ DEAHRA GNYAY ++ IL +TA+PG ++ I II+NL I +E
Sbjct: 130 SLIIFDEAHRAVGNYAYVYIAKKYRESREDHLILGITASPGGNEEKIMEIIENLGIENVE 189
Query: 288 YRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQT 347
R E D+DV YV KI+ +E+ M E E+ ++ E+ + L GL T
Sbjct: 190 IRTEEDRDVKKYVKGFKIKWVELPMPNEIRELYGKLKELYNSIITELRKFGLFSTLKKPT 249
Query: 348 LSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR-----RLLSSHGIRPAY 402
D+L ++ +Q +IK G+ E Y A++ I+ L + G AY
Sbjct: 250 RR--DVLRAQKIVQQ-------EIKDGKSEFYQAAMLITMAIKIDYALEYLETQGFEAAY 300
Query: 403 EMLEEKLKQGS------FARFMSKNEDIRKVKLLMQQSISHGA--QSPKLSKMLEVLVDH 454
L +++G+ AR + ++E +V + ++ ++PKL+ + ++
Sbjct: 301 NYLLRIIEEGNSKGGSKAARTLVRDERFIEVMRIARKIEERKGDIENPKLNALRVIIRKE 360
Query: 455 FKTKDPKHSRVIIFSNFRGSVR 476
+ K SR+I+F++FR + +
Sbjct: 361 L--AENKDSRIIVFTHFRETAQ 380
>gi|329765288|ref|ZP_08256868.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329138194|gb|EGG42450.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 505
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 141/485 (29%), Positives = 223/485 (45%), Gaps = 54/485 (11%)
Query: 100 KTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159
K +I ++ RDYQ + A+ N +V LPTGLGKT IA VI + G ++F
Sbjct: 10 KKYIQKNSIEKRDYQVNLANQAIQENCIVVLPTGLGKTAIALQVIAEYLSR-GSGGVLFL 68
Query: 160 APSRPLVMQQIEACHNIVGIPQEWTID----MTGQISPTKRASFWKTKRVFFVTPQVLEK 215
AP+R LV Q + + + T+D +TG+ S KR W V TP++ +
Sbjct: 69 APTRVLVNQHYDF------LKKNLTLDDISLITGEDSIQKRTKLWNGS-VICATPEITKN 121
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
D+ ++ DE HR G+YAY S RIL +TAT S++
Sbjct: 122 DLDRDIVSPNQFSLVIYDEVHRTVGDYAYSGIAERFASS--NSRILGMTATLPSEKDKAT 179
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI-------WEVIR 328
++ L IS++ R+E DV Y E I VE+ E I + ++++R
Sbjct: 180 ELLTKLRISSVAERSEDSPDVKPYTQETNTEWISVELPPEMKAIQTLLKLSLDERYDILR 239
Query: 329 PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYH 388
+ I L + + L + R A P F A I +++
Sbjct: 240 K-----NGIKLAEQQSLSALLRIRQFVLTQNRRSAKP-------------LFTA-IRIHY 280
Query: 389 IRRLLSSHGIRPAYEMLEE-KLKQGSFAR-FMSKNEDIRKVKLLMQQSISHGAQSPKLSK 446
+L +HGI + + K+K+G+ + + + + L + + S G + K+ K
Sbjct: 281 ALNILEAHGITSFLKFCDRAKIKKGAGVKELFEVDPNFTRAIHLAKDAQSKGIEHSKILK 340
Query: 447 MLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQ 506
+ E++ + + +IF+++R SV I N L +G + A IG+S G
Sbjct: 341 LKEII-------ESVPGKALIFTSYRDSVDVIFNKLTEMG--ISAAILIGKS---GDTGL 388
Query: 507 SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
QK Q ++ FR G + V+VAT +GEEGLDI EV+ VI +D S +R +QR GRTGRK
Sbjct: 389 KQKKQIETVQNFRDGLFRVLVATRVGEEGLDISEVNQVIFYDNVPSSIRFVQRRGRTGRK 448
Query: 567 HDGRI 571
G++
Sbjct: 449 DTGKL 453
>gi|393795773|ref|ZP_10379137.1| DEAD/DEAH box helicase [Candidatus Nitrosoarchaeum limnia BG20]
Length = 505
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 141/485 (29%), Positives = 223/485 (45%), Gaps = 54/485 (11%)
Query: 100 KTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159
K +I ++ RDYQ + A+ N +V LPTGLGKT IA VI + G ++F
Sbjct: 10 KKYIQKNSIEKRDYQVNLANQAIQENCIVVLPTGLGKTAIALQVIAEYLSR-GSGGVLFL 68
Query: 160 APSRPLVMQQIEACHNIVGIPQEWTID----MTGQISPTKRASFWKTKRVFFVTPQVLEK 215
AP+R LV Q + + + T+D +TG+ S KR W V TP++ +
Sbjct: 69 APTRVLVNQHYDF------LKKNLTLDDISLITGEDSIQKRTKLWNGS-VICATPEITKN 121
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
D+ ++ DE HR G+YAY S RIL +TAT S++
Sbjct: 122 DLDRDIVSPNQFSLVIYDEVHRTVGDYAYSGIAERFASS--NSRILGMTATLPSEKDKAT 179
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI-------WEVIR 328
++ L IS++ R+E DV Y E I VE+ E I + ++++R
Sbjct: 180 ELLTKLRISSVAERSEDSLDVKPYTQETNTEWISVELPPEMKAIQTLLKLSLDERYDILR 239
Query: 329 PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYH 388
+ I L + + L + R A P F A I +++
Sbjct: 240 K-----NGIKLAEQQSLSALLRIRQFVLTQNRRSAKP-------------LFTA-IRIHY 280
Query: 389 IRRLLSSHGIRPAYEMLEE-KLKQGSFAR-FMSKNEDIRKVKLLMQQSISHGAQSPKLSK 446
+L +HGI + + K+K+G+ + + + + L + + S G + K+ K
Sbjct: 281 ALNILEAHGITSFLKFCDRAKIKKGAGVKELFEVDPNFTRAIHLAKDAQSKGIEHSKILK 340
Query: 447 MLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQ 506
+ E++ + + +IF+++R SV I N L +G + A IG+S G
Sbjct: 341 LKEII-------ESVPGKALIFTSYRDSVDVIFNKLTEMG--ISAAILIGKS---GDTGL 388
Query: 507 SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
QK Q ++ FR G + V+VAT +GEEGLDI EV+ VI +D S +R +QR GRTGRK
Sbjct: 389 KQKKQIETVQNFRDGLFRVLVATRVGEEGLDISEVNQVIFYDNVPSSIRFVQRRGRTGRK 448
Query: 567 HDGRI 571
G++
Sbjct: 449 DTGKL 453
>gi|395323127|gb|EJF55624.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 1239
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 170/320 (53%), Gaps = 18/320 (5%)
Query: 269 SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIR 328
K + +Q I+D L+IS +E R+E+D D+ Y+H + + V+M ++ + + + ++
Sbjct: 307 GKPEVVQEIVDALHISHIEIRSETDPDLKKYLHTKHEQEHFVQMTEDICVLRDALSAMMV 366
Query: 329 PYTSRLSAIGLLQNRDYQ--TLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITL 386
P ++ G L+N + Q L P ++ + +A PQ G V A G L
Sbjct: 367 PLIKKIQGAGFLKNGNTQPTMLHPYRCQSTLGEMTKA---RAPQYAIGAV-AQLGPLARA 422
Query: 387 YHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHG-AQSPKLS 445
+S + + + E S + + K++ ++ + ++ + G + PK+
Sbjct: 423 MGYLMEMSINMCYGFLKGIAEGADDSSGKKAIRKSDALKSLMAKFEEQAARGFSMHPKMD 482
Query: 446 KMLEVLVDHFKTKDP---------KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIG 496
+ +L+DHF P SR ++F +FR V +I+ L +++A FIG
Sbjct: 483 VLRTLLIDHFNQSSPDDADGGARASESRAMVFVSFRECVEEIVELLNKESPIIRAKPFIG 542
Query: 497 QSSGK-ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
Q K KG +QK Q V+E+F+AG YNV+V+TSIGEEGLDI EVDL++C+DA +P+R
Sbjct: 543 QGKDKQGKKGYAQKEQLEVIEQFKAGKYNVLVSTSIGEEGLDIGEVDLIVCYDAQKTPIR 602
Query: 556 MIQRMGRTGRKHDGRIPHIF 575
M+QR+GRTGRK G + HI
Sbjct: 603 MLQRIGRTGRKASGTV-HIL 621
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 95 DAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF--RW 150
D AAK+WIYP+N P R+YQ+ I K L NTLVALPTGLGKT IA VV+ N+ +W
Sbjct: 247 DRLAAKSWIYPLNKPKREYQYNIVKNCLLENTLVALPTGLGKTFIAGVVMLNWVTAKW 304
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 33/41 (80%), Gaps = 1/41 (2%)
Query: 535 GLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
GLDI EVDL++C+DA +P+RM+QR+GRTGRK G + HI
Sbjct: 694 GLDIGEVDLIVCYDAQKTPIRMLQRIGRTGRKASGTV-HIL 733
>gi|449689367|ref|XP_002165117.2| PREDICTED: uncharacterized protein LOC100207251, partial [Hydra
magnipapillata]
Length = 872
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 165/298 (55%), Gaps = 51/298 (17%)
Query: 324 WEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGAL 383
++V++ RL + ++ + + + LS L+ +R+++R+ + QI G +E FG
Sbjct: 3 FKVLQVAVKRLHSKKVIWHEEPEKLSRFQLIKAREQWRKNSAISDRQIA-GVIEGDFGLC 61
Query: 384 ITLYHIRRLLSSHGIRPAYEMLE-------------EKLKQG-SFARFM----------- 418
I+LY+ LL HG+ Y L+ ++L Q +F M
Sbjct: 62 ISLYYAYELLLQHGLLSFYNFLKGVLSGVKGTPLCRKELSQNIAFMDMMEELHSEIEPED 121
Query: 419 --SKNEDIR-------KVKLL--MQQSISHGAQSPKLSKMLEVLVDHFK---------TK 458
S NE I K +LL + + +S PKL K+ E++++HF+ +
Sbjct: 122 GESLNESIMLGKNISAKQRLLKSIPKPLSSFNSHPKLLKLEEIVLEHFRRFCPNSSKSVQ 181
Query: 459 DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ-----SSGKASKGQSQKVQQA 513
P ++RV+IFS +R SV++I L+ L+K FIGQ + GK +KG SQK Q
Sbjct: 182 TPLNTRVMIFSQYRDSVQEITALLSKHEPLIKVMSFIGQGNKETAGGKNTKGLSQKEQFE 241
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
VL+KFR GGYN IV+TS+GEEGLDI +VDL++CFDA+ SP+R++QRMGRTGR DGRI
Sbjct: 242 VLQKFRNGGYNTIVSTSVGEEGLDIGDVDLIVCFDASNSPIRLVQRMGRTGRVRDGRI 299
>gi|340345003|ref|ZP_08668135.1| DEAD/DEAH box helicase domain protein [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520144|gb|EGP93867.1| DEAD/DEAH box helicase domain protein [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 503
Score = 166 bits (421), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 143/489 (29%), Positives = 225/489 (46%), Gaps = 62/489 (12%)
Query: 100 KTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159
+ ++ ++ RDYQ + A+ N +V LPTGLGKT IA VI + G ++F
Sbjct: 8 RKYVQKNSIEKRDYQVNLANQAIQENCIVVLPTGLGKTAIALQVIAEYLSKGIGG-VLFL 66
Query: 160 APSRPLVMQQIEACHNIVGIPQEWTID----MTGQISPTKRASFWKTKRVFFVTPQVLEK 215
AP+R LV Q E + Q ID +TG+ KR W V TP++ +
Sbjct: 67 APTRVLVNQHYEF------LKQHLAIDDIALITGEDPIQKRTKLWGNS-VICATPEIAKN 119
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275
D+ +V DE HR G+YAY + LRIL +TAT S++
Sbjct: 120 DLDRQIVSQDQFSLVVFDEVHRTVGDYAYSGIADRFANS--NLRILGMTATLPSEKDKAT 177
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI-------WEVIR 328
++ L IS++ R E DV Y E I VE+ E I + ++++R
Sbjct: 178 ELLIRLRISSVAERTEDSPDVKPYTQETNTEWINVELPPEMKAIQTLLKLALDERYDILR 237
Query: 329 PYTSRLSAIGLLQNRDYQTLSPVDLLNSR----DKFRQAPPPNLPQIKFGEVEAYFGALI 384
+L+ D ++LS LL R ++ R++ P I+
Sbjct: 238 KNGIKLA--------DQKSLSA--LLRIRQFVLNQNRRSAKPLFTAIR------------ 275
Query: 385 TLYHIRRLLSSHGIRPAYEMLEE-KLKQGSFAR-FMSKNEDIRKVKLLMQQSISHGAQSP 442
+++ +L +HG+ + E K+K+G + + + + L + S G +
Sbjct: 276 -IHYALNILEAHGVTSFLKFCERAKIKKGVGVKDLFEIDPNFTRAIHLANDAQSKGIEHS 334
Query: 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKA 502
K+ K+ E++ + + +IF+++R SV I N L +G + A IG+S
Sbjct: 335 KILKLKEII-------ESVPGKALIFTSYRDSVDVIFNKLTEMG--ISAGILIGKS---G 382
Query: 503 SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
G QK Q ++ FR G + V+VAT +GEEGLDI EV+ VI +D S +R IQR GR
Sbjct: 383 ETGLKQKKQIQTVQDFRDGLFRVLVATRVGEEGLDISEVNQVIFYDNVPSSIRYIQRRGR 442
Query: 563 TGRKHDGRI 571
TGRK G++
Sbjct: 443 TGRKDTGKL 451
>gi|193084204|gb|ACF09868.1| ATP-dependent RNA helicase EIF-4A family [uncultured marine group
II euryarchaeote KM3-136-D10]
Length = 928
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 148/521 (28%), Positives = 239/521 (45%), Gaps = 56/521 (10%)
Query: 107 NVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLV 166
+V R YQ L + TL+ LPT LGKT I +VI GK + AP+ LV
Sbjct: 16 SVEARAYQIEAVADCLGAPTLLVLPTALGKTPIEWMVIAERLHTV-GGKALIIAPTNALV 74
Query: 167 MQQIEACHNIVGIPQEWTID----MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
Q + I + T D MTG I KR W + TP V+ D+ G+
Sbjct: 75 NQHFVDLKAV--IKNQKTDDSITSMTGSIDWRKRQKRWAAAEIIVATPHVIRNDVNRGSI 132
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
+ + LV DEAH +TG ++ + IL TA+PGS ++ ++ + + L
Sbjct: 133 DLSDVTILVADEAHHSTGKHSSAEVGDLYLQFANDPLILGATASPGSTREQVEEVCNRLG 192
Query: 283 ISTLEYRNESDQDVSSYVHNRKIE--LIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLL 340
+ + R+ + ++ Y +++ ++V+ G + + ++W + +L +G
Sbjct: 193 LKRIHSRSAENALLAPYAAGLQVKEVFVDVDDGLKLMAAPLQMW--LEHLVDQLRRLGYH 250
Query: 341 QNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA-----LITLYHIRRLLSS 395
+ T S ++ +R + + A I GE AY A L ++ L S
Sbjct: 251 VHSGRATSSQLN--ETRGRIQGA-------IVRGEGLAYNAARQCAQAQRLLNLIGYLLS 301
Query: 396 HGIRPAYEMLE------EKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLE 449
G+ + E L E +G+ A F D R +L +S K+ K +
Sbjct: 302 QGVAASREYLGRVKNSGENGDKGASAFF----NDSRITELFENLKVSPELHE-KVGKTVN 356
Query: 450 VLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQK 509
+++D + +P+ SRVIIF++FR +V +I+ L + K F+GQ+S S G +QK
Sbjct: 357 LVLDQLEA-NPE-SRVIIFAHFRDTVNEIVKRLEE-SEHAKPERFVGQASRDGSAGMTQK 413
Query: 510 VQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDG 569
Q L++FR G NV+VATS+GEEGLD+ DLV+ ++ S +R IQR GRTGR G
Sbjct: 414 AQLEGLQRFREGKCNVLVATSVGEEGLDVPRADLVVFYEPVGSEIRTIQRRGRTGRHRAG 473
Query: 570 RIPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIFKEK 610
+ HI + +D+ A + +F+EK
Sbjct: 474 TV-HILI----------------ARDTRDEGARASALFREK 497
>gi|326921331|ref|XP_003206914.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein-like
[Meleagris gallopavo]
Length = 1864
Score = 160 bits (404), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 152/271 (56%), Gaps = 34/271 (12%)
Query: 323 IWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA 382
+ +V+ + RL +G+L RD +L+ ++ +RD++R+ P P ++ G +E F
Sbjct: 279 LRQVLETFAGRLIKMGVLARRDIPSLTKYQIILARDQYRKNPSPQNVGMQQGVIEGDFAL 338
Query: 383 LITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRK---VKLLMQ------- 432
I+LYH LL G R + L + GS +KNE R ++L Q
Sbjct: 339 CISLYHGYELLQQMGARSLFIYLC-GIMDGSKGLTRTKNELGRNEDFMRLYQQLTDMFSD 397
Query: 433 --QSISHG-------------AQSPKLSKMLEVLVDHFKTKDPK--------HSRVIIFS 469
Q+ ++G PKL K+ E++ +HFK++ + +RV+IFS
Sbjct: 398 VCQTSANGNLHKMSENKKEFIYSHPKLKKLEEIVTEHFKSRGYQTTSGSTSVDTRVMIFS 457
Query: 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
+FR SV++I L+ +V+ F+G S+GK++KG +QK Q V+++FR GGYN +V+T
Sbjct: 458 SFRDSVQEIAEMLSRFSPVVRVMTFVGHSTGKSTKGFTQKEQLEVVKRFREGGYNTLVST 517
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+GEEGLDI EVDL+ICFDA SP+R++QRM
Sbjct: 518 CVGEEGLDIGEVDLIICFDAQKSPIRLVQRM 548
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 54/82 (65%)
Query: 196 RASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP 255
R W T+RVFF+TPQ++ D+ GTC + CLVIDEAH+A GN+AYC ++EL
Sbjct: 6 RRELWATRRVFFLTPQIMVNDLSRGTCPAVEIKCLVIDEAHKALGNHAYCQVVKELSRYT 65
Query: 256 VQLRILALTATPGSKQQTIQHI 277
Q R LALTATPGS + + I
Sbjct: 66 KQFRXLALTATPGSDTKVRREI 87
>gi|386875459|ref|ZP_10117630.1| DEAD/DEAH box helicase [Candidatus Nitrosopumilus salaria BD31]
gi|386806739|gb|EIJ66187.1| DEAD/DEAH box helicase [Candidatus Nitrosopumilus salaria BD31]
Length = 468
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 136/452 (30%), Positives = 210/452 (46%), Gaps = 44/452 (9%)
Query: 128 VALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID- 186
+ LPTGLGKT IA +I ++ DG ++F AP++ LV Q E + T+D
Sbjct: 1 MVLPTGLGKTAIALQIIADYLSK-GDGAVLFLAPTKVLVNQHYEF------LKTHLTLDD 53
Query: 187 ---MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYA 243
+TG+ KR W + TP++ D+ ++ DE HR G+YA
Sbjct: 54 ISLITGEDPIQKRTKLWNNS-IICATPEIARNDLNRQIISPNQFSLVIFDEVHRTIGDYA 112
Query: 244 YCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNR 303
Y + V RI+ +TAT S++ I+ L IS + RNE DV Y
Sbjct: 113 YSGIAERFENSTV--RIVGMTATLPSEKDKATEILSRLRISCVAERNEDSPDVKPYTQET 170
Query: 304 KIELIEVEMGQEAVEINNRIWEVI--RPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFR 361
E I VE+ E I + + R R + I L + + L + R
Sbjct: 171 HTEWINVELPPELKAIQTLLKLALDERYDVLRKNGIKLAEQQSLSALLRIRQFVLNQNRR 230
Query: 362 QAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEE-KLKQGSFAR-FMS 419
A P F A I +++ +L +HGI P + E + K+G +
Sbjct: 231 SAKP-------------LFTA-IRIHYALNILEAHGITPFLKFCERAQAKKGVGVKDLFE 276
Query: 420 KNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM 479
+ + + L +++ S G + K+ K+ E+L + + +IF+++R SV I
Sbjct: 277 VDPNFTRAIHLAKEAQSRGIEHSKIPKLKEIL-------ESVPGKALIFTSYRDSVDLIY 329
Query: 480 NALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIM 539
N L G + A IG++ G+A G QK Q +++KFR G + V++AT +GEEGLDI
Sbjct: 330 NKLTEQG--ISAGILIGKA-GEA--GLKQKKQIEIVQKFRDGLFRVLIATRVGEEGLDIA 384
Query: 540 EVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
EV+ VI +D S +R IQR GRTGRK G++
Sbjct: 385 EVNQVIFYDNVPSSVRYIQRRGRTGRKDTGKL 416
>gi|20095114|ref|NP_614961.1| Hef nuclease [Methanopyrus kandleri AV19]
gi|19888409|gb|AAM02891.1| ERCC4-like helicase-nuclease [Methanopyrus kandleri AV19]
Length = 741
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 133/470 (28%), Positives = 217/470 (46%), Gaps = 49/470 (10%)
Query: 111 RDYQFAITKTALFS--NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
R+YQ ++ L S NTLV +PTGLGKT I +V+ +G+ VF AP+ PLV Q
Sbjct: 15 REYQVSVAAEILDSMDNTLVVIPTGLGKTAIGVMVLSELV---DEGRAVFLAPTVPLVNQ 71
Query: 169 Q---IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMK 225
IE + + +TG++ P +R WK V TP V+ DI G
Sbjct: 72 HARFIERATRGLDVKA-----LTGRVRPERRKVEWKKSDVIVATPHVIRNDIIEGRIDPD 126
Query: 226 YLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYIST 285
++ DEAHRA G Y Y +E + V LTA+PGS + I+ ++ NL I
Sbjct: 127 EASVVIFDEAHRAVGGYPYVYVSKEFNCLKV-----GLTASPGSDVKRIKEVVQNLGIER 181
Query: 286 LEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI---GLLQN 342
+ + E D DV Y+ K+E ++VE+ + +N E+ R + RL + G LQ+
Sbjct: 182 IIVKTEEDPDVKKYLGRVKVEWVDVELPE---WFDNARRELQRAFERRLELLEDMGFLQS 238
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRP- 400
+ + LL+ R++ R+ + + + + R +L + GI P
Sbjct: 239 --SRNVWVGKLLSLREEIREQMAKRRERASWCSRALGVVAEALRIARAREILETQGIEPF 296
Query: 401 ---AYEMLEEKLKQG--SFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF 455
+ E K G S R + R V+ S+ PKL ++ E++
Sbjct: 297 LRYVERLTERKRSSGGSSLRRILGDPNFQRAVRECKSASLRDEPDHPKLPEVEELV---- 352
Query: 456 KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVL 515
KD + + ++F+ + + + I + L IG + +G+ K + Q V+
Sbjct: 353 --KDVESA--LVFTQYVDTAKLIADYLKEIG--ISVGVLLGKEHMKEHE------QLDVI 400
Query: 516 EKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
+ + G V+V+TS+GEEGLD+ + V+ ++ S +R IQR+GRT R
Sbjct: 401 KSIKRGECRVLVSTSVGEEGLDLPTCEEVVLYEPVPSEIRTIQRIGRTAR 450
>gi|254169443|ref|ZP_04876268.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
boonei T469]
gi|197621613|gb|EDY34203.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
boonei T469]
Length = 259
Score = 156 bits (395), Expect = 6e-35, Method: Composition-based stats.
Identities = 90/233 (38%), Positives = 130/233 (55%), Gaps = 3/233 (1%)
Query: 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167
V R+YQ +I K+AL NTLV LPTGLGKT+IA +V+ + GKI+F AP++PLV
Sbjct: 13 VEEREYQVSIAKSALRGNTLVVLPTGLGKTIIAILVLVEVLQK-KGGKILFLAPTKPLVE 71
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYL 227
Q + I E I +TG++S KR + + +V TPQ+++ DI +G +
Sbjct: 72 QHARTIKKLTKI--EDVIVLTGEVSRKKRKELYGSAKVVVATPQIIQNDIIAGELKIGDF 129
Query: 228 VCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLE 287
++ DEAHRA GNYAY ++ IL +TA+PG ++ I II+NL I +E
Sbjct: 130 SLVIFDEAHRAVGNYAYVYIAKKYRKSREDHLILGITASPGGDEEKIMEIIENLGIENVE 189
Query: 288 YRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLL 340
R E D+DV YV KI+ IE+ M E E+ ++ E+ + L GL
Sbjct: 190 IRTEEDKDVKKYVKGFKIKWIELPMPNEIRELYGKLKELYNSIITELRKFGLF 242
>gi|193083867|gb|ACF09548.1| ATP-dependent RNA helicase EIF-4A family [uncultured marine group
II euryarchaeote KM3-85-F5]
Length = 593
Score = 153 bits (386), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 138/464 (29%), Positives = 214/464 (46%), Gaps = 23/464 (4%)
Query: 103 IYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ P V R YQ AL + L+ LPT GKT +A + I G ++ AP+
Sbjct: 10 LSPEAVEARAYQLQAMDEALSGSMLLVLPTAAGKTAVAWMAIAERLE-TTTGWVLMIAPT 68
Query: 163 RPLVMQQ-IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
LV Q + +VG + I ++GQ KR W + R+ F TPQV+ D+ GT
Sbjct: 69 VALVNQHSVGTTPVLVGGSEVNPISISGQQPVAKRPDLWSSSRLVFATPQVVRNDVLRGT 128
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+ LV+DEAH TGN+A +S ILA TA+PGSK ++ + L
Sbjct: 129 LSLAECSLLVVDEAHHCTGNHAMAQVAELYISQSEDPLILATTASPGSKTNQVEEVCTRL 188
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
I + R +D ++ + L +E+ + VE+ ++I E+ P+ R+ G++
Sbjct: 189 GIQRIHLRAPNDPMMAEH-------LAGLEVTETKVEVPDQIRELAEPF--RVWQTGIVD 239
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA-----LITLYHIRRLLSSH 396
+ + S A I GE AY A + L+H+ L
Sbjct: 240 REKRLGRYVMPGMISHAGLSNAMERAQASISRGESSAYRSASQIATAMRLHHLINHLLCQ 299
Query: 397 GIRPAYEMLEEKLKQGSFARFMSKNEDIR--KVKLLMQQSISHGAQSPKLSKMLEVLVDH 454
GI + E L+ ++ R S + +R +V+ L+ + G K+ + ++
Sbjct: 300 GIAASREFLDRMAREDGKGR--SARDFLRDPRVRGLVGRLAEMGEVHSKVGAVRRLVRQR 357
Query: 455 FKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAV 514
+ SRVI+F+ +R +V + AL + + + +FIGQSS G S K Q
Sbjct: 358 LRRD--AESRVIVFATYRDTVNALEQALTGL-EGARPVQFIGQSSRGGRGGLSPKQQIER 414
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558
L FR+G NV+VATS+GEEGLDI DLVI ++ S +R IQ
Sbjct: 415 LGAFRSGSANVLVATSVGEEGLDIPSADLVIFYEPVSSEIRTIQ 458
>gi|296083008|emb|CBI22309.3| unnamed protein product [Vitis vinifera]
Length = 164
Score = 152 bits (384), Expect = 1e-33, Method: Composition-based stats.
Identities = 83/145 (57%), Positives = 97/145 (66%), Gaps = 18/145 (12%)
Query: 30 ACQSSKPSTSNSTNFNLCSKANKKPSTCKQSTLDKFFGNLG---PKPQGTEEFNEGSSF- 85
ACQ++KPS S CS NK P KQSTLDKF G P G + S+
Sbjct: 19 ACQTTKPSIS-------CSDDNK-PKLSKQSTLDKFISPAGAVLPLENGDTTNKDKSNLV 70
Query: 86 -DESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI 144
D+ LC + IDAEAAKTWIYPVNVP+R YQ +ITKT LFSNTLVALPTGLGKTLIAAVV+
Sbjct: 71 GDKGLCCIDIDAEAAKTWIYPVNVPLRKYQLSITKTTLFSNTLVALPTGLGKTLIAAVVM 130
Query: 145 YNFFRWFPDGKIV-----FAAPSRP 164
YN+FRWFP+G ++ F S+P
Sbjct: 131 YNYFRWFPEGNVILCTNSFVTSSKP 155
>gi|449527741|ref|XP_004170868.1| PREDICTED: uncharacterized protein LOC101232478, partial [Cucumis
sativus]
Length = 302
Score = 150 bits (379), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 83/109 (76%), Gaps = 2/109 (1%)
Query: 571 IPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPTSDST 630
IPH +PEVQFV+LSI+Q+V GKKVKDDHA+ FK KLT ET L+ KYFHP D+
Sbjct: 24 IPHAIRPEVQFVKLSIKQFVRPGKKVKDDHAVQIS-FKNKLTDTETQLLLKYFHPCDDA- 81
Query: 631 WRPSLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQGLTFSRDDRTF 679
WRPSLIAFPHFQ PSR H V+HS RT +LID MQHLQGL FSR+ +F
Sbjct: 82 WRPSLIAFPHFQTFPSRTHGVLHSCRTMVLIDTMQHLQGLHFSRESESF 130
Score = 47.8 bits (112), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 792 SSPLKTSDKNYDELTVQSKAVEELTTSQAACIKDGALPISRFCRSDALPEKPLDGFEEIL 851
S P + +L V ++AV + TTSQ + D P L +K ++ E
Sbjct: 191 SEPGSYCVRTAQDLIVPTEAVIKQTTSQTKILPDEFFPSPETDCVPVLEDKAMNLIETNH 250
Query: 852 DSPVLRRNQLREEDTTDETLDVNEIKEPLSPDDEYHNDLRDSELSPRLTNLIKSG 906
+ +L+R +DT DE L V EI+ +P DE+ + +++LSPRLTNLI+SG
Sbjct: 251 QNTLLKR-IFFNKDTVDEKL-VLEIEPQFTPADEF--SITETQLSPRLTNLIESG 301
>gi|449524549|ref|XP_004169284.1| PREDICTED: ATP-dependent DNA helicase MPH1-like, partial [Cucumis
sativus]
Length = 184
Score = 147 bits (371), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 103/157 (65%), Gaps = 21/157 (13%)
Query: 17 EFDWEAAVREIDTAC---------QSSKPSTSNSTN--------FNLCSKANKKPSTCKQ 59
+FDWEAAV+EID A S PS + S++ F L S+ N+K T +Q
Sbjct: 29 DFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSDAAAETPASFPL-SEENEKRGTSRQ 87
Query: 60 STLDKFFGN--LGPKPQGTEE-FNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFA 116
STL +F N K E+ + ++S+ V ID EAAKTWIYPVNVP+RDYQ A
Sbjct: 88 STLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIYPVNVPLRDYQLA 147
Query: 117 ITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD 153
ITKTALFSNTLVALPTGLGKTLIAAVV+YN+FRWFP+
Sbjct: 148 ITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 184
>gi|195481394|ref|XP_002086716.1| GE11154 [Drosophila yakuba]
gi|194186506|gb|EDX00118.1| GE11154 [Drosophila yakuba]
Length = 1371
Score = 133 bits (334), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 95/153 (62%), Gaps = 15/153 (9%)
Query: 71 PKPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVAL 130
P+P+ ++E +G FD + H WIYP N+P+R YQ I ++ALF NTLV L
Sbjct: 34 PRPELSDESCDG--FDVATGH---------NWIYPNNLPLRSYQQTIVQSALFKNTLVVL 82
Query: 131 PTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQ 190
PTGLGKT IAAV+++NF+RW+P GKIVF AP+RPLV QQI A I+ P T+ +T
Sbjct: 83 PTGLGKTFIAAVLMFNFYRWYPKGKIVFMAPTRPLVSQQIHASQKIMPFPSADTVQLTV- 141
Query: 191 ISPTKRASFWKTKRVFFVTP---QVLEKDIQSG 220
+S +R + + + + P Q+LE DI G
Sbjct: 142 VSLKERIKESRERLLQIIEPYLRQLLESDIFKG 174
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 141/291 (48%), Gaps = 28/291 (9%)
Query: 305 IELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAP 364
++L V + + E R+ ++I PY +L + + + +S LL + F +
Sbjct: 137 VQLTVVSLKERIKESRERLLQIIEPYLRQLLESDIFKG-NKGNVSKNSLLFEQKSFIERS 195
Query: 365 PPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDI 424
+ F I++YH L+ HG+R + + G ++K+ D+
Sbjct: 196 AQGQRHPDHNIIMGNFAMCISMYHSLELMERHGLRVFVNNFD-AAEDGREKFVLAKDSDL 254
Query: 425 RKVKLLMQQ------------SISHGAQSP----------KLSKMLEVLVDHFKTKDPKH 462
R + ++Q ++++G P K K+ EVLV HF+
Sbjct: 255 RNLVEQVRQELGANPLDYTTHAMTNGEVPPLPSDLDFGHAKYEKLREVLVQHFQAN--AD 312
Query: 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG-KASKGQSQKVQQAVLEKFRAG 521
SR I+F +R SV I L +++ F+GQ S AS +QK Q ++ FR+G
Sbjct: 313 SRAIVFCEYRESVMLIHRLLLQHRPVLRPRCFVGQGSTVGASYALTQKQQLQIMSDFRSG 372
Query: 522 GYNVIVATSIGEEGLDIMEVDLVICFDANVS-PLRMIQRMGRTGRKHDGRI 571
NV+VATSIGEEG+D+ EV++++CFD + S P R +QR+GRTGRK +G +
Sbjct: 373 TSNVLVATSIGEEGIDVGEVEMIVCFDISSSNPTRFVQRIGRTGRKKNGEV 423
>gi|301617487|ref|XP_002938176.1| PREDICTED: Fanconi anemia group M protein-like [Xenopus (Silurana)
tropicalis]
Length = 2037
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 460 PKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSS-GKASKGQSQKVQQAVLEKF 518
P +R++IFS+FR SV++I L V+ F+G SS GK KG +QK Q V+++F
Sbjct: 555 PGDTRIMIFSSFRDSVQEIAEMLNQHHPTVRVMTFVGHSSAGKGVKGFTQKEQLEVVKRF 614
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
R GG+N +V+T +GEEGLDI EVDL+ICFDA SP+R++QRMGRTGRK GRI
Sbjct: 615 REGGFNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLVQRMGRTGRKRQGRI 667
>gi|242067657|ref|XP_002449105.1| hypothetical protein SORBIDRAFT_05g005220 [Sorghum bicolor]
gi|241934948|gb|EES08093.1| hypothetical protein SORBIDRAFT_05g005220 [Sorghum bicolor]
Length = 628
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 115/417 (27%), Positives = 171/417 (41%), Gaps = 122/417 (29%)
Query: 556 MIQRMGRTGRKHDGRI------------------------------------------PH 573
MIQRMGRTGRK++GR+ PH
Sbjct: 1 MIQRMGRTGRKNEGRVVVLAYEGQELQGYRKKQGDCRTMRKLLHNSERFEYHASPRMVPH 60
Query: 574 IFKPEVQFVELSIEQYVS--RGKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPTSDSTW 631
++KPEV++V+L+I++Y+ + K+V A +P K++ A+ +IA+YF + W
Sbjct: 61 VYKPEVKYVKLTIDKYIPHLKKKRVAAKEASPSPW---KMSEADGQMIARYFGVCKEEVW 117
Query: 632 RPSLIAFPHFQALPSRVHKVMHSFR-TGMLIDMMQHLQGLTFSRDDRTFVEDEVSSDKHL 690
RPSL+AFP FQ PS VHKV HSFR T ML D MQ LQ + R + +
Sbjct: 118 RPSLVAFPRFQLYPSVVHKVPHSFRTTDMLTDAMQQLQDPSLFR-----------TKCEI 166
Query: 691 GLQTVEPCETDERDNFHGTKKVTDSELSTRTLGTQENHSMPQSCCKSPAAHAYLFGSDFI 750
LQ EP +E + S K H + F D++
Sbjct: 167 PLQ--EP---------------------ANVAAVEEGLELEGSPVKKYPIHTF-FSGDYV 202
Query: 751 SVDALGKVLIISVPALPFKELSHSKKKRAPDTLLLNHWKQDSSPLKTSDKNYDELTVQ-- 808
+VD G V I VP LP K + SK + + N+ Q+ + S + TV+
Sbjct: 203 TVDRRGSVSITFVPVLPQK-FAFSKDIK---NAVWNNKDQNKAEPYISAASVSRTTVEFV 258
Query: 809 ---SKAVEELTTSQAACIKDGALPISRFCRS-------DALPEKPLDGFEEILDSPVLRR 858
+ + + + + + S C + +P K L E +D+P
Sbjct: 259 HPVANTDKHMFVDNVSTVAMHSPEYSGHCDNVDDNHVFTTVPPKTLTSPREKMDTPC--- 315
Query: 859 NQLREEDTTDETLDVNEIKEPLSPDDEYHNDLRDSELSPRLTNLIKSGVVPESPINE 915
+K P S ++ D ELSPRLT ++ G+VPESP+ E
Sbjct: 316 ----------------NVKLPES----TYSYQEDMELSPRLTAYMEEGIVPESPVVE 352
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
Query: 1094 VSSEAEVSDDEEDDEDNNSYDDSFIDDRMNPTATSTQAESSG---VDMMAIYRFLLLS 1148
VS +A+VS+DE+D++ + Y+DSFIDD+ PT TQ E G DMM YR+L +S
Sbjct: 416 VSEDADVSEDEDDNQTEDKYEDSFIDDQAIPTEC-TQTEQGGGHNGDMMGFYRYLDVS 472
>gi|157137549|ref|XP_001664003.1| hypothetical protein AaeL_AAEL013822 [Aedes aegypti]
gi|108869686|gb|EAT33911.1| AAEL013822-PA [Aedes aegypti]
Length = 654
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 113/495 (22%), Positives = 210/495 (42%), Gaps = 50/495 (10%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H D A W+YP++ +Y I + L+ N+LV LP KT I AV +YN +RW
Sbjct: 46 HAGFDPHAGTNWLYPIDFTSSEYLPLIAEKCLYHNSLVILPNKTEKTFITAVTMYNIYRW 105
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
+P GK+++ AP R + Q AC + +DM + P R W KRVFF++
Sbjct: 106 YPLGKVLYVAPKRGHIDDQKVACEQYMKFLPTDVVDMA--MKPHDRVRMWMAKRVFFIST 163
Query: 211 QVLEKDIQSG---TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267
++ DI +M + +VID+ I++L+ R+L ++ T
Sbjct: 164 TMMVMDINRALQDIPVMDKVKLIVIDDPQLEPRQ--NTKIIQKLLEHTKNFRVLCVSTTS 221
Query: 268 GSKQQTIQHIIDNLYISTLE--YRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE 325
G + +++ + IS +E + N + ++ ++I I +GQ + +
Sbjct: 222 GKTVEA--NLLKSWLISNIELQWGNPHEAPEEWLMNKKEISNIWTPLGQSLTALLEEFKQ 279
Query: 326 VIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALIT 385
VI+P+ +L L+ +++ ++ + R ++ +A + G + L+
Sbjct: 280 VIQPFLQKLLNAKLITKCEFERITQETIRLDRARYEEA-------LLTGTMRNDHHDLML 332
Query: 386 LYHI-RRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRK-----VKLLMQQSIS-HG 438
+H+ RLL AY +LE + F N+ I + V L + + +
Sbjct: 333 NFHMAERLLE------AYRILEREGIVALLEYFHRANDVIVQADPSVVAFLNKLRVGVYN 386
Query: 439 AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQS 498
PK + L + ++ + + +++ + ++A I L++ I +S
Sbjct: 387 TPHPKFRTLENFLKEFYQRRTDANILIVV---------ERIDAGVVIQQLLRQ---IPES 434
Query: 499 SGK--ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
K +Q VQQ FR G +N ++ T E L I ++DL++ F+ P
Sbjct: 435 MPKLIVDAKFAQDVQQ-----FRHGQFNTLIVTVQVEPILVIGKIDLIVLFNMTSKPREF 489
Query: 557 IQRMGRTGRKHDGRI 571
+ + RT G I
Sbjct: 490 LAHIARTRGAEPGAI 504
>gi|238588435|ref|XP_002391725.1| hypothetical protein MPER_08804 [Moniliophthora perniciosa FA553]
gi|215456784|gb|EEB92655.1| hypothetical protein MPER_08804 [Moniliophthora perniciosa FA553]
Length = 674
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 81/111 (72%), Gaps = 2/111 (1%)
Query: 466 IIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG-KASKGQSQKVQQAVLEKFRAGGYN 524
++F R +V +I+ A+ L++A+ FIGQ + + KG +QK Q V++KF+AG +N
Sbjct: 1 MVFVTNREAVEEIVQAMDAHRPLLRASRFIGQGTDVRGQKGLAQKEQLEVIKKFKAGEFN 60
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
V+VATSIGEEGLDI EVDL+IC+DA +P+RM+QR+GRTGRK G I H+
Sbjct: 61 VLVATSIGEEGLDIGEVDLIICYDAQKTPIRMLQRLGRTGRKRAG-IVHVL 110
>gi|224012569|ref|XP_002294937.1| rna-helicase-like protein [Thalassiosira pseudonana CCMP1335]
gi|220969376|gb|EED87717.1| rna-helicase-like protein [Thalassiosira pseudonana CCMP1335]
Length = 197
Score = 107 bits (267), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 93/163 (57%), Gaps = 10/163 (6%)
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATI-GDLVKATEFIGQS-------SGKASKG 505
+FK + +RVI+FS +R SV I+ L++ +K ++FIGQS KA G
Sbjct: 26 YFKKAVNESTRVIVFSQWRDSVEGIVAMLSSQHQSFLKPSQFIGQSKKSAGTKGKKAKAG 85
Query: 506 QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
+Q QQ VLE+F G +N++V T + EEGLDI EVDL++ FD SP+R IQR GRTGR
Sbjct: 86 MNQAQQQKVLEQFSKGIFNILVCTCVAEEGLDISEVDLIVNFDILKSPIRNIQRSGRTGR 145
Query: 566 KHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIFK 608
K +GR+ IF E S + V+ KK+ +FK
Sbjct: 146 KRNGRV--IFLVSEGQEERSYRESVTNTKKIARALQSNRNVFK 186
>gi|328874858|gb|EGG23223.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
Length = 2645
Score = 107 bits (267), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 128/519 (24%), Positives = 211/519 (40%), Gaps = 92/519 (17%)
Query: 112 DYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW----------FPDGKIVFAAP 161
DYQ+ T+ ++ NT+V LPTG GKT IA +V+ ++ + I+F
Sbjct: 171 DYQWESTRQSVPKNTIVVLPTGKGKTKIAVMVMKILYQLNNLKQEEKETYQKRMILFLTN 230
Query: 162 SRPLVMQQIEA----CHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
PL QQ +A C ++ I +G I ++ V T ++ I
Sbjct: 231 KIPLAEQQAKAIKQDCPDL-KIHLRTGEGESGNIMEDRQYD------VIVCTADIIRNWI 283
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIREL--MSVPVQLRILALTATPGSKQQTIQ 275
MK ++ DE H ATG + + E+ + Q RIL LTA+P + +
Sbjct: 284 GYNMASMKDFYLVIYDECHHATGEHVFVKLAEEIKKLDREFQPRILGLTASPSTGGKDTS 343
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRK---------IELIEVEMGQEAVEINNRIWEV 326
I+ N I LE +++ S + K +E I + ++ + I V
Sbjct: 344 QIMKN--IDALE------RNIGSTIFRPKSLPMENPLEMESIVYQFTRQEIGTRKEIDSV 395
Query: 327 IRPYTSRL------SAIGLLQNRD-----YQTLSPVDLLNSRDKFRQAPPPNLPQIKFGE 375
+ T RL + L N YQ L +D D R PP + + G
Sbjct: 396 LAEATKRLCDELKFTDPNLRYNDQNYTSFYQGLKKLD-----DYHRDQNPPRMTSVPSG- 449
Query: 376 VEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQ--------GSFARFMSKNEDIRKV 427
L L+++ +L GI+ + E L+ ++ +M K +
Sbjct: 450 ------LLYKLFNLIGILQVQGIQAVLTSIVEDLQMDELDSYYTSAYMYYMKKIQ----- 498
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHS--------RVIIFSNFRGSVRDIM 479
K ++ Q + G P S + L D+ K R I+F R D++
Sbjct: 499 KGVLDQFV--GTNPPLYSSKYKALRDYINNFIEKSVANDTISDVRGIVFVKTRQGCSDLI 556
Query: 480 NALAT--IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLD 537
L + +K+ F+G + G S + Q ++E FR G +VATS+ EEG+D
Sbjct: 557 KLLKKEPVNLHIKSKLFVGHT---GEDGMSTEKQNRIMESFRKGDCKFLVATSVLEEGID 613
Query: 538 IMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFK 576
+ + ++VI FD +++ MIQR GR R DG+ ++ K
Sbjct: 614 VQQCNMVISFDPDLNLRNMIQRRGR-ARSKDGKFAYLIK 651
>gi|170060911|ref|XP_001866011.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167879248|gb|EDS42631.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 642
Score = 106 bits (264), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 107/495 (21%), Positives = 214/495 (43%), Gaps = 44/495 (8%)
Query: 91 HVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
H D + ++W++PV+ DY I + L+ N+LV LP + +AAVV++N +RW
Sbjct: 29 HAGFDPHSGQSWLFPVDFVTPDYLPLIVEKTLYHNSLVILPNRFEVSFVAAVVMHNVYRW 88
Query: 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTP 210
+P GK+VF +R Q AC ++ +DM + P +R W TKR FF+T
Sbjct: 89 YPFGKVVFICSNRKATQDQRAACDRLMKFVPSDVVDMA--LKPHERVRNWATKRAFFITS 146
Query: 211 QVLEKDI---QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267
+ ++ ++ M+ + +VI++ A+ I++L + R+L +T T
Sbjct: 147 HTMAGEMARQEAERVAMRKIKLVVIEDPQLDV--RAHSAIIQKLTEMGANFRVLCVTTTH 204
Query: 268 GSKQQTIQHIIDNLYISTLE--YRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE 325
G + Q + +IS +E + N ++ ++ ++I I +G + +
Sbjct: 205 GKTVEPAQ--LKQWHISNIELQWGNPQEKPDEWLMNKKEISNIVTVLGTVMDGLLAELQL 262
Query: 326 VIRPYTSRLSAIGLLQNRD-YQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI 384
+ + Y + L A + N ++T++ + R ++ + + + EV F
Sbjct: 263 LTQRYLANLHACKQIANTSLFETITADHIRQERTRYELSVLTGVVRKNHFEVMRNFHMAE 322
Query: 385 TLYHIRRLLSSHGIRPA---YEMLEEKLKQG--SFARFMSKNEDIRKVKLLMQQSISHGA 439
L R+L+ G+ + + + L Q F+ K ++Q + + A
Sbjct: 323 KLVLAHRILARDGVVALMDYFHLQNDALGQADSELTAFLHK----------VRQGV-YTA 371
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHS---RVIIFSNFRGSVRDIMNALATIGDLVKATEFIG 496
PK + + L + F+ + + R++I V + +A+ + ++K I
Sbjct: 372 PHPKFTTLDNFLREFFQQRTSVVAAALRILI-------VVERTDAVLLVNRILKN---IP 421
Query: 497 QSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
+S + + + +++FR G NV+V E +++ DLV+ F+ PL
Sbjct: 422 ESKHRCLIDSNYA---SYVDQFRTGELNVLVVPVEIEPSIELGHTDLVVLFNITDHPLEF 478
Query: 557 IQRMGRTGRKHDGRI 571
+ + RT G I
Sbjct: 479 LCHIARTRGGQPGAI 493
>gi|345308281|ref|XP_001509166.2| PREDICTED: probable ATP-dependent RNA helicase DDX58
[Ornithorhynchus anatinus]
Length = 781
Score = 105 bits (262), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 144/556 (25%), Positives = 248/556 (44%), Gaps = 95/556 (17%)
Query: 77 EEFNEGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFS-NTLVALPTGLG 135
EE E +F E+L A KT P N R YQ + K AL NT++ PTG G
Sbjct: 71 EEEPEKQNFSETLFS---SAGVMKTTYSPQNA--RSYQMELAKPALVGKNTIICAPTGCG 125
Query: 136 KTLIAAVVIYNFFRWFPD---GKIVFAAPSRPLVMQQ----IEA----CHNIVGIPQEWT 184
KT +A ++ N + P+ GK+VF P+ QQ IE + + GI E
Sbjct: 126 KTFVAIMICKNHLQNMPNGQRGKVVFLVTKVPVYEQQKAVFIEQFERESYTVAGISGE-- 183
Query: 185 IDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYA 243
T +P + K + +TPQ+L +++GT + ++ DE H ++
Sbjct: 184 ---TAGNTPVEHVI--KNSDIIVLTPQILVNSLKNGTVPSLSMFTLMIFDECHNTDKSHP 238
Query: 244 YCTAI-----RELMSVPVQL-RILALTATPG-----SKQQTIQHI------IDNLYISTL 286
Y + +L + QL +I+ LTA+ G +K + IQHI +D IST+
Sbjct: 239 YNKIMINYLDNKLGTSACQLPQIVGLTASVGVGDAKNKNEAIQHICKLCACLDAPIISTV 298
Query: 287 EYRNESDQDVSSYVHN-----RKIELIEVEMGQEAV-EINNRIWEVIRPYTSRLSAIGLL 340
E+ D+ V RK+E V + ++ V ++ ++ + S+ + +
Sbjct: 299 ---RENLDDLEKIVFKPQKLFRKVETRRVNLFKDIVSQLMAETEKLAKNVHSKTRCLFEV 355
Query: 341 QNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY--HIRR----LLS 394
QNR + T + + K + + QI E E + +Y H+R+ L+
Sbjct: 356 QNRSFGTQKYEQWIVNIQKICK-----VFQIPDKEEERRICKTLFIYTSHLRKYNDALII 410
Query: 395 SHGIRP--AYEMLE-----------EKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQS 441
R A + LE +K++Q RF K ++++ + S + +
Sbjct: 411 HEDARTTDALDYLEDFFNHVKSGEVDKIEQYLIQRFEEKQQELKNI------SRNEQNDN 464
Query: 442 PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI------GDLVKATEFI 495
PKL ++ +L + + +P+ SR I+F R + NAL D +K+ +
Sbjct: 465 PKLKELCFLLEEEYHL-NPE-SRTILFVKTRA----LANALKRWIEENPKLDYLKSDVLM 518
Query: 496 GQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
G+ + G + +Q+ VLE F+A G V++ATS+ +EG+DI + ++VI ++ + +
Sbjct: 519 GRGKRNQATGMTLPLQKDVLETFKASGETKVLIATSVADEGIDIAQCNVVILYEYIGNVI 578
Query: 555 RMIQRMGRTGRKHDGR 570
+MIQ GR GR D +
Sbjct: 579 KMIQTRGR-GRAKDSK 593
>gi|393238576|gb|EJD46112.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 1427
Score = 105 bits (262), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 139/511 (27%), Positives = 207/511 (40%), Gaps = 87/511 (17%)
Query: 105 PVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF-----PDGKIV-F 158
P + R YQ I A N + L TG GKT IA +I +W P+ K+V F
Sbjct: 11 PAQLEARRYQEEIFVAAQQGNIIAVLDTGSGKTFIAVQLI----KWVTAQPCPERKVVVF 66
Query: 159 AAPSRPLVMQQIEACHNIVGIPQEWTI-DMTGQISPTKRASFWK--------TKR-VFFV 208
AP RPLVMQQ + V + ++ + DMT K+ W TKR V +
Sbjct: 67 LAPKRPLVMQQALFIQSQVPLNTQYYLGDMTVD---DKKVELWDREQWRKEFTKRDVLVM 123
Query: 209 TPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLR--ILALTA 265
TPQ+L + M + LV DEAH A G + Y +++ +S +PV R I +TA
Sbjct: 124 TPQILLDLLTHAHWQMSKISLLVFDEAHHAQGKHPYSQILKQFVSTLPVGKRPKIFGMTA 183
Query: 266 TPGSKQQTIQHIIDNL-------YISTLEYRNESDQDVS----------SYVHNRK---- 304
+P + Q +D L I+ E++ E + VS SY +R+
Sbjct: 184 SPTWDAKRAQKQLDALESTMNARIIAVKEHQVELSKHVSRPKELVYLYQSYDPSRRETYG 243
Query: 305 ------IELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRD 358
L + + V +W+V+ P L +D S L RD
Sbjct: 244 LDDTEAAALEDAPLSPGDVPTVPGVWDVLSP----------LLEKDVPDFS--KLKTRRD 291
Query: 359 KFRQAPPPNLPQIKFGEVEAYFGALI--TLYHIRRLLSSHGIRPAYEMLEEKLKQGSFAR 416
+ P ++ YF AL L R+ S + + + A
Sbjct: 292 VLLDSLGPYAAELF---AHRYFTALAGKLLDAARKAAISATAKSLARVKRLEDLHARLAA 348
Query: 417 FMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVR 476
F+S + I SPKL + +VL ++ +H + +IF +
Sbjct: 349 FLSG---------FVPGEIPDALVSPKLRLLGDVLCENHD----EHFKCVIFVEQKHIAM 395
Query: 477 DIMNALATIGDL--VKATEFIGQS-SGKASKGQSQKVQQA-VLEKFRAGGYNVIVATSIG 532
+ L + +L V IG S +G+ G QQA V++ FRA YNV++ATS+
Sbjct: 396 TLAELLPRLSELDWVSPAALIGHSTTGETDIGGMDSKQQAEVVKGFRASKYNVLLATSVA 455
Query: 533 EEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
EEGLD LVI FD + + +Q GR
Sbjct: 456 EEGLDFQACHLVIRFDGLQNLISYVQSRGRA 486
>gi|290993372|ref|XP_002679307.1| dicer helicase [Naegleria gruberi]
gi|284092923|gb|EFC46563.1| dicer helicase [Naegleria gruberi]
Length = 857
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 116/473 (24%), Positives = 205/473 (43%), Gaps = 75/473 (15%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R+YQ + + NT++ PTG GKT IAA++I++ P K++F LV QQ
Sbjct: 108 REYQKELVEHCKDENTIIVAPTGAGKTFIAALLIHHMLNLNPFKKVLFIVNQISLVEQQA 167
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRA-SFWKTKR----VFFVTPQVLEKDIQSGTCLMK 225
A +E+ I+ G K++ WK + V T Q++ +Q +
Sbjct: 168 RAL-------REFGIEKVGAFHGEKKSIKNWKLETKDFTVLVCTIQIILNVLQYSD-IFD 219
Query: 226 YLVCLVIDEAHRATGNYAYCTAIREL--------MSVPVQLRILALTATPGSKQQTIQHI 277
L L+ DE H N+ + +R+ + +P RIL L+ATP +K + +
Sbjct: 220 DLQLLIFDECHHTHSNHPFKVLMRDYYKPRKHAGLLIP---RILGLSATPAAKNTIAETL 276
Query: 278 IDNLYIS-----TLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332
+ L + T+ +++++ ++V ++ I V+M ++ + + I+ IR
Sbjct: 277 LKILQLGHDLDCTVRQVENNEEELGTFVFTPSMKSISVDMDPFSLRLRDFIFNAIRGV-- 334
Query: 333 RLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392
I LL+N + + + VD+ +S KFG EA + + H+
Sbjct: 335 ---KIKLLEN--FSSDADVDMDDS---------------KFGTDEADEWLDLKMNHVT-- 372
Query: 393 LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLV 452
Y+ ++ F R+ N+ + L I H A+ L+K+L+
Sbjct: 373 -------GTYDKEDDNRNLDDFIRYSKSNKQNSNLILTCSLPI-HCAKRFALAKLLK--- 421
Query: 453 DHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT---IGDLVKATEFIGQSSGKASKGQSQK 509
+K + K R +IF R ++ + L + + D +K +G+S G +
Sbjct: 422 -QYK-ETGKELRALIFVKTRIGCKETLEFLQSEPDLKDYLKVDILLGKS------GMTSN 473
Query: 510 VQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
Q +L+ FR G N +++TS+ EEGLD+ LVI D + MIQ GR
Sbjct: 474 QQNTILDNFRQGIVNTLISTSVAEEGLDVPACSLVIRLDGIETTKTMIQSRGR 526
>gi|426201894|gb|EKV51817.1| DEAD-box like helicase, partial [Agaricus bisporus var. bisporus
H97]
Length = 187
Score = 104 bits (259), Expect = 3e-19, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 83/133 (62%)
Query: 208 VTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267
+TPQ L D+ S C + +V L++DEAHRATG+YAY +R +M+ R++ALTATP
Sbjct: 1 MTPQTLMNDLTSENCDVMDIVLLIVDEAHRATGDYAYNQIVRHMMAKNPHFRLIALTATP 60
Query: 268 GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVI 327
G + +Q+++D L+IS +E RNE D+ Y+H++ +E + M + I + + +++
Sbjct: 61 GKDTEGVQNLVDGLHISRIEIRNEESIDLRGYMHDKNVEQHCIRMPEGIAAIRDALEQLM 120
Query: 328 RPYTSRLSAIGLL 340
+ L ++G++
Sbjct: 121 ETFMKPLQSMGII 133
>gi|405973601|gb|EKC38303.1| Putative ATP-dependent RNA helicase DDX58 [Crassostrea gigas]
Length = 948
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 114/489 (23%), Positives = 219/489 (44%), Gaps = 61/489 (12%)
Query: 108 VPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFF---RWFPDGKIVFAAPSR 163
+ +R YQ + + +L N ++ PTG GKT +A +I + + K++F
Sbjct: 283 LKLRSYQMELARPSLEGKNAIIVAPTGSGKTHVALCIIKHHMETIKSIRHPKVIFLVEQS 342
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR-VFFVTPQVLEKDIQSGTC 222
L QQ + C + + + + K + W +R + VT Q+L ++ G
Sbjct: 343 ALAEQQGKQCMTYLPFKVKVITGESQRNERMKSLNEWIARRDLLVVTAQILLNALRDGIV 402
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR--------ILALTATPGSKQQT- 273
+ +V DE H N++Y + + + +Q R +L LTA+ G + T
Sbjct: 403 SVTDFSLMVFDECHHTNDNHSYNMIMNRYLDLKLQDRERAKTLPMVLGLTASVGVGRATM 462
Query: 274 -------IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEV 326
I+ I+ N+ ++ E+ ++ YV + ++ +E ++ V
Sbjct: 463 IVEAKRHIEKIMANMDAESIATVIENTTELEKYVI----------IPKQNLERVQKLETV 512
Query: 327 IRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQ-APPPNLPQIKFGE-----VEAYF 380
++P + S Q V +L +R+ A N ++F E ++ Y
Sbjct: 513 LKPPLEKGSD---------QYTQWVSML-----WRETAKINNKVVVRFFETCRKYLDLYN 558
Query: 381 GALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQ-SISHGA 439
ALI R + I ++ + +K R M + D ++K ++ SI
Sbjct: 559 KALIIYEDARPSDALAYIFKEFKKWKHTVKADDTERIMRRMFD--EIKSTLEDCSIDPCH 616
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFR---GSVRDIMNALATIGDLVKATEFIG 496
++PKL+ + +++ +HF+ ++P +RVI+F R ++ MN + ++K +F+G
Sbjct: 617 RNPKLTNLRDIIGEHFR-ENP-GARVIVFVKTRELAKAMETYMNETKELS-ILKPIQFVG 673
Query: 497 QSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
+ + + G ++ Q LE F+ G + VI+ATS+ EEGLDI++ LV+ +D + + M
Sbjct: 674 VQANRENGGMTKVQQDETLELFKEGNHKVIIATSVAEEGLDILKCSLVVRYDHVTNEIAM 733
Query: 557 IQRMGRTGR 565
+Q GR GR
Sbjct: 734 VQSRGR-GR 741
>gi|409083055|gb|EKM83412.1| hypothetical protein AGABI1DRAFT_110078, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 187
Score = 103 bits (258), Expect = 5e-19, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 83/133 (62%)
Query: 208 VTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267
+TPQ L D+ S C + +V L++DEAHRATG+YAY +R +M+ R++ALTATP
Sbjct: 1 MTPQTLMNDLTSENCDVMDIVLLIVDEAHRATGDYAYNQIVRHMMAKNPHFRLIALTATP 60
Query: 268 GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVI 327
G + +Q+++D L+IS +E RNE D+ Y+H++ +E + M + I + + +++
Sbjct: 61 GKDTEGVQNLVDGLHISRIEIRNEESIDLRGYMHDQNVEQHCIRMPEGIAAIRDALEQLM 120
Query: 328 RPYTSRLSAIGLL 340
+ L ++G++
Sbjct: 121 ETFMKPLQSMGII 133
>gi|190344782|gb|EDK36533.2| hypothetical protein PGUG_00631 [Meyerozyma guilliermondii ATCC
6260]
Length = 413
Score = 103 bits (257), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 59/69 (85%)
Query: 507 SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
SQKVQ+ +++KFR+G NV+VATSIGEEGLDI EVDL++C+D+ SP++ IQRMGRTGRK
Sbjct: 2 SQKVQKEIVKKFRSGDINVLVATSIGEEGLDIGEVDLIVCYDSTSSPIKNIQRMGRTGRK 61
Query: 567 HDGRIPHIF 575
DG++ +F
Sbjct: 62 RDGKVLLLF 70
>gi|281206201|gb|EFA80390.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 804
Score = 103 bits (257), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 123/489 (25%), Positives = 210/489 (42%), Gaps = 70/489 (14%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R+YQ K A+ N + +PTGLGKT IAA+VI + P +I+F PLV+QQ
Sbjct: 212 REYQKYFYKKAMEDNIICCIPTGLGKTQIAAMVICKMKQMNPKKRILFLVERIPLVLQQE 271
Query: 171 EACH-----NIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMK 225
+ N++G+ + +ID A V + ++ +M+
Sbjct: 272 KYIREQTGLNVLGVHGDMSID----------AKLNDHHDVLVSISALFLNLLRDNKGVME 321
Query: 226 YLVCLVIDEAHRATGNYAYCTAIREL---MSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
+V DEAH ++++ +++ M V+ +++ LTA+P K I I
Sbjct: 322 QYSLIVFDEAHHIVKDHSFSMLLKKHYKDMEDDVKPKVMGLTASPAGKSSWIDTFISLKV 381
Query: 283 ISTLEY------RNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSA 336
+S + E+ D+ + + +++L+E++ + + N I + + + S L
Sbjct: 382 MSCISGCRIISPDAETQADIEEHRNTAELQLVELQQHPKEKYLINAINCITKHFASSLVP 441
Query: 337 IGL-LQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395
Q D Q L V L N+ +++ Q L+ + + L +
Sbjct: 442 TKKEYQYEDIQELL-VKLENTDNEYEQ-------------------LLLNVANKCYDLVT 481
Query: 396 HGIRP---AYEMLEEKLKQGSFARFMSKN----------EDIRKVKLLMQQSISHGAQSP 442
+G P A+ ++ KQ RF + N ED+R + +
Sbjct: 482 YGNDPKDAAHPTVD--YKQILINRFEATNIPKEKKQRLFEDLRAIPKEFDDDDT--TNIC 537
Query: 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG-----DLVKATEFIGQ 497
KL L +L + +T DP + I+F R S ++ L T +K + G
Sbjct: 538 KLDIALNILEEKNQT-DPAF-KAILFVKTRQSAEQLVKVLTTRAKEERYKFLKPGKVSGH 595
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
S K S GQS Q+ ++EKFR+G +NVIVAT++ EEGLD+ E ++VI D+ +
Sbjct: 596 GSTK-SGGQSTASQKDIVEKFRSGQHNVIVATAVLEEGLDVPECNVVIRIDSPATVTAYT 654
Query: 558 QRMGRTGRK 566
Q GR K
Sbjct: 655 QSRGRLRSK 663
>gi|198430581|ref|XP_002121377.1| PREDICTED: similar to DEAD/H box polypeptide RIG-I [Ciona
intestinalis]
Length = 1013
Score = 102 bits (255), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 125/501 (24%), Positives = 220/501 (43%), Gaps = 69/501 (13%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+RDYQ + + A+ N+L+ PTG GKT +A V + PD ++VF P PL+ Q
Sbjct: 300 LRDYQLELAEQAMSGENSLIVAPTGSGKTFVALKVCKDHIEKRPDSRVVFMVPRVPLIKQ 359
Query: 169 QIEACHNIV----GIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM 224
Q E + GI + + D T +P R ++ F+TPQ+L ++ +
Sbjct: 360 QYELFKCFLGDGQGILRAISTDETLS-APADRLIL--DHKISFLTPQILVNLLRQDPSFI 416
Query: 225 KYLVCLVIDEAHRATGNYAYCTAI----------RELMSVPVQLRILALTATPG------ 268
L L+ DE H Y + + R L +P +I+ LTA+PG
Sbjct: 417 NKLGLLIFDECHHTVKGDPYNSIMKIYHDNLLKNRRLDILP---QIVGLTASPGVGSAKS 473
Query: 269 --SKQQTIQHIIDNLYISTLEYR-NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE 325
+ + I+ ++ NL ++T + ++++ Y + K EL ++ Q E +I
Sbjct: 474 DEAAAKNIKTLLANLNVTTAPIEVQKHKKNLNQYENEAKYELKPIKRQQS--EFRTKIRL 531
Query: 326 VIRPYTSRLSAIGLLQNRDYQTLSPVDL-------------LNSRDKFRQAPPPNLPQIK 372
V+ ++L + +N + DL ++ K PNL Q +
Sbjct: 532 VMDKIETKLK-LEFRRNDNATKGMKFDLKAMSGTQDYEAWVVSFYKKSTLLVDPNLSQ-R 589
Query: 373 FGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL-----KQGSFARFMSKNEDIRKV 427
F Y + I + S R A E LEE+L + A +++I V
Sbjct: 590 FMAYARYLWKYNSSLWINDHVQS---RHAKEYLEEELPLIQPRTPVEAELKKLHDEI--V 644
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL--ATI 485
+M+++ +P ++ + ++L F TK P+ S+ IIF R + ++ + + +
Sbjct: 645 PEIMEEN------NPMINALYKILKTEF-TKQPE-SKCIIFVRTRPIAKALITCIEESEV 696
Query: 486 GDL-VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
L + + G + G ++ Q+ + FR G VIVATS+ EEGLDI +L+
Sbjct: 697 EKLHLNPKQLTGAGAAVELGGMTKATQEDTIASFRDGRCKVIVATSVAEEGLDIKACNLI 756
Query: 545 ICFDANVSPLRMIQRMGRTGR 565
I ++ + + + +QR GR GR
Sbjct: 757 ITYNYSTNEIGQVQRQGR-GR 776
>gi|146422637|ref|XP_001487254.1| hypothetical protein PGUG_00631 [Meyerozyma guilliermondii ATCC
6260]
Length = 413
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 58/69 (84%)
Query: 507 SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
SQKVQ+ +++KFR G NV+VATSIGEEGLDI EVDL++C+D+ SP++ IQRMGRTGRK
Sbjct: 2 SQKVQKEIVKKFRLGDINVLVATSIGEEGLDIGEVDLIVCYDSTSSPIKNIQRMGRTGRK 61
Query: 567 HDGRIPHIF 575
DG++ +F
Sbjct: 62 RDGKVLLLF 70
>gi|149237124|ref|XP_001524439.1| hypothetical protein LELG_04411 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451974|gb|EDK46230.1| hypothetical protein LELG_04411 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 433
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 498 SSGKAS-KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
SS KA G +QK+Q+ ++ +F+ G YNV+VATSIGEEGLDI EVDL++C+D+ SP++
Sbjct: 54 SSEKAQISGMNQKLQKEIIRQFKNGDYNVLVATSIGEEGLDIGEVDLIVCYDSTSSPIKN 113
Query: 557 IQRMGRTGRKHDGRIPHIF 575
IQRMGRTGRK DG++ +F
Sbjct: 114 IQRMGRTGRKRDGKVVLLF 132
>gi|281207108|gb|EFA81291.1| RNA-directed RNA polymerase [Polysphondylium pallidum PN500]
Length = 2852
Score = 100 bits (250), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 114/492 (23%), Positives = 211/492 (42%), Gaps = 46/492 (9%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF---RWFPDGK-------IVFAA 160
R+YQ A+ NTL+ +PTGLGKTL+A ++I +W P+ + ++F
Sbjct: 415 REYQIESLARAIKKNTLLVIPTGLGKTLVAIMLIQQMVAVNQWTPEQQAGNHKRMVLFTV 474
Query: 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR--VFFVTPQVLEKDIQ 218
+ PLV QQ +A ++ ++S K ++KR + T +
Sbjct: 475 NTNPLVEQQEKAIKKHNSTLTVLKLNSENRLSDRKINFKVQSKRPDIIVATCDSIINLFN 534
Query: 219 SGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL--RILALTATPGSKQQTIQH 276
+ + ++ DE H ATG+++Y + + +L RIL L+A+P S + I+
Sbjct: 535 TRKLCISDFHTIIFDEVHHATGDHSYTKVMTHYKEMEAKLYPRILGLSASPSSGEDRIK- 593
Query: 277 IIDNLYISTLEYRNESDQDVSSYVHNRKIE-LIEVEMGQEAVEINNR---IWEVIR-PYT 331
I N+ + ++ ++S V + I +E Q + ++V++
Sbjct: 594 ITGNIM--------KMEKVLASSVFRPNLPPTINLESNQLVFTLTQEEKDCFKVVKEKIN 645
Query: 332 SRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFG------EVEAYFGALIT 385
RL I + N + + D N+ FR NL Q +V G ++
Sbjct: 646 ERLKTIMMESNYFLKGMELSD--NNHPSFRS----NLKQFYTWTVHNDLKVSNELGDILR 699
Query: 386 LYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLS 445
++ + G LE L + S++ L++++ S +
Sbjct: 700 IFEWLMVTGVEGFNQFLNYLENDLASTAIQEGRSRDFIEELHNLVVEKGGKRVVNSSRYQ 759
Query: 446 KMLEVLVDHFKTKDPK-HSRVIIFSNFRGSVRDIMNALAT--IGDLVKATEFIGQSSGKA 502
+++E L + +++ + R IIF R + R +++ L I V A +G +
Sbjct: 760 RVVEKLTEKLDSEEKVINFRGIIFVKKRSTSRSLVHMLKKEPINSKVNAKIIVGHN---G 816
Query: 503 SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
G + Q+ ++ KFR G ++VATS+ EEG+D+ + V+CFD ++ MIQR GR
Sbjct: 817 EDGMDSEKQERIMVKFREGQSKLLVATSVLEEGIDVNTCNFVLCFDDDLDMRSMIQRRGR 876
Query: 563 TGRKHDGRIPHI 574
K +G ++
Sbjct: 877 ARNKEEGEFWYV 888
>gi|170074996|ref|XP_001870647.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167872051|gb|EDS35434.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 703
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 9/216 (4%)
Query: 83 SSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAV 142
S F S H D + ++W++PV+ DY I + L+ N+LV LP + +AAV
Sbjct: 215 SQFRLSNIHAGFDPHSGQSWLFPVDFVTPDYLPLIVEKTLYHNSLVILPNRFEVSFVAAV 274
Query: 143 VIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202
V++N +RW+P GK+VF +R Q AC ++ +DM + P +R W T
Sbjct: 275 VMHNVYRWYPFGKVVFICSNRKATQDQRAACDRLMKFVPSDVVDMA--LKPHERVRNWAT 332
Query: 203 KRVFFVTPQVLEKDI---QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR 259
KR FF+T + ++ ++ M+ + +VI++ A+ I++L + R
Sbjct: 333 KRAFFITSHTMAGEMARQEAERVGMRKIKLVVIEDPQLDV--RAHSAIIQKLTEMGANFR 390
Query: 260 ILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQD 295
+L +T T G + Q + +IS +E + + Q+
Sbjct: 391 VLCVTTTHGKTVEPAQ--LKQWHISNIELQWGNPQE 424
>gi|354485032|ref|XP_003504688.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 [Cricetulus
griseus]
Length = 679
Score = 99.0 bits (245), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 131/488 (26%), Positives = 217/488 (44%), Gaps = 53/488 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N +V LPTG GKT AA V GK+V LV Q
Sbjct: 3 LRPYQWEVILPALEGKNIIVWLPTGAGKTRAAAFVANRHLETVDGGKVVVLVNRVHLVNQ 62
Query: 169 QIEACHNIVGIPQEWTID-MTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + + WT+ ++G + P RA F R + T ++L+ + S
Sbjct: 63 HAEEFRRM--LDKRWTMTTLSGDMGP--RAGFGLMARSHDLLICTAELLQLALISPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSKQQT-- 273
+ +V+DE H + Y + + +Q ++L LTA+PG+ + T
Sbjct: 119 HVELTEFSLIVVDECHHTHKDTVYNNILSRYLEQKLQKAERLPQVLGLTASPGTGRATKL 178
Query: 274 ---IQHIIDNLYISTLEYRNESDQDVSSYV--HNRKIELIEVEMGQEAVE--INNRIWEV 326
I HI+ L + R S ++ S + HN K + ++ Q E + + ++
Sbjct: 179 QGAIDHIL-QLCANLDACRIMSPENCHSQLLEHNPK-PCKQYDLCQRRQEDPFGDLLKKL 236
Query: 327 IRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITL 386
+R +L L Q QT + S+ P +I + Y AL+
Sbjct: 237 MRQIHQQLEMPELSQQFGTQTYEQQVVELSKAAAEAGFPER--RIFALHLRHYNDALLIH 294
Query: 387 YHIRRLLSSHGIRPAYEMLEEKL-KQGSFARFMSKNEDIRKVKLL------MQQSISHGA 439
+R + A +ML++ ++ + R +N I + L + Q +HG
Sbjct: 295 DTVR-------AQDALDMLQDFYHRESTVTRTQFRNVKIWLLDLFIGHKDTLAQLAAHGP 347
Query: 440 QSPKLSKMLE-VLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKATEF 494
++PKL KMLE +L+ F++ P H R IIF+ R S ++ L L +KA
Sbjct: 348 ENPKL-KMLEGILLKQFES--PNHPRGIIFTRTRQSAYFLLLWLWQQPCLQNVNIKAQML 404
Query: 495 IGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
IG + S +QK QQ V+++FR G N++VATS+ EEGLDI + ++V+ + + +
Sbjct: 405 IGAGNTSQSTHMTQKDQQEVIQEFRDGIVNLLVATSVAEEGLDIAQCNVVVRYGLLTNEI 464
Query: 555 RMIQRMGR 562
M+Q GR
Sbjct: 465 SMVQARGR 472
>gi|308469221|ref|XP_003096849.1| hypothetical protein CRE_24668 [Caenorhabditis remanei]
gi|308241264|gb|EFO85216.1| hypothetical protein CRE_24668 [Caenorhabditis remanei]
Length = 1030
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 125/526 (23%), Positives = 229/526 (43%), Gaps = 81/526 (15%)
Query: 108 VPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPS 162
+ +R+YQ + + A+ NT+V PTG GKT++AA ++ N F R K +F AP+
Sbjct: 296 INLRNYQVELCRLAVQGINTIVTAPTGTGKTVVAANIVKNHFEVRAREEKTFKALFLAPN 355
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL-------EK 215
++ QQ + ++ + + I SPT++A + + TPQ++ E
Sbjct: 356 TTILQQQADRLNHFLAHSYDLKICQGSDNSPTRQAVL--SNDIIVATPQMIVNLCNEHED 413
Query: 216 DIQSGTCLMKYLVCLVI---DEAHRATGNYAYCTAIRELMSVPVQL---------RILAL 263
++ + YL I DE H N Y +RE ++ +I+ L
Sbjct: 414 ELSEFSNEKFYLSTFSIILFDECHSTVNNSPYANIMREYHTLKNMGTMPDNHELPQIVGL 473
Query: 264 TATPGSK-----QQTIQHI------IDNLYISTL-EYRNESDQDVSSYVHNRKIELIEVE 311
TA+ G+ ++ IQHI +D +ST+ EY +E Q S + + + +
Sbjct: 474 TASLGTGDANNVEKAIQHIASMCALLDVEKLSTVCEYADEL-QMFSPIIPEKIYSFEKNK 532
Query: 312 MGQEAVEINNRIWEVIRPYTSRLSAI---GLLQNRDYQTLSP---------VDLLNSRDK 359
G R E++R ++ + + +Y ++ V LN
Sbjct: 533 DGSSG-----RFAELVRQMMDNITMMLETAFVSREEYSKVTNGEKTPAKDHVAYLNWLSC 587
Query: 360 FRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMS 419
+++ Q + L Y + S+ R A++ +EK+K+ RF++
Sbjct: 588 LKRSVAEQNFQGNRNNINEALSMLDICYRSQSFNSNFNPRTAFKYFDEKVKEQE--RFLT 645
Query: 420 KNEDIRKVKLLMQQSISHGAQ--------SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNF 471
+ ++K ++ Q Q +P + K+ ++L ++ + + ++SR IIF
Sbjct: 646 E-----RMKEVLHQYYPRLEQLGSDVPIENPMILKIEDLLTENHR--ENQNSRAIIFVQT 698
Query: 472 RGSVRDIMNALATIGDLVKA---TEFI----GQSSGKASKGQSQKVQQAVLEKFRAGGYN 524
R + N L +L+ T++I + G S+ Q L++F +GG
Sbjct: 699 RYDAITLKNILCDNENLLSQNIRTDYILGLNKTTEGSEDSAISRSDQVEKLKQFASGGIR 758
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
V+V+TS+ EEGLDI E +LVI ++ + + +QR GR GR +D R
Sbjct: 759 VLVSTSVAEEGLDISECNLVIKYNYATNVIAHVQRRGR-GRANDSR 803
>gi|327349134|gb|EGE77991.1| dicer [Ajellomyces dermatitidis ATCC 18188]
Length = 1482
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 127/509 (24%), Positives = 220/509 (43%), Gaps = 72/509 (14%)
Query: 105 PVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV-FAAPSR 163
PV P R YQ + + +L N ++A+ TG GKT +A + I + K+V F AP+
Sbjct: 43 PVFKP-RAYQLEMLEASLRENIIIAMDTGSGKTQVAILRIRHELETCAAHKLVWFLAPTV 101
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK----------RVFFVTPQVL 213
L QQ ++ I Q+ + T + + ++W TK R+ TPQVL
Sbjct: 102 ALADQQHKS------ISQQLSAYQTRLLLGSDNVNYWSTKNIWDDILLNIRIVVSTPQVL 155
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL--------RILALTA 265
+ G M + LV DEAH N A ++ +Q IL LTA
Sbjct: 156 LDAMTHGFMTMSRIALLVFDEAHHCAENEAPNILMQRFYHEQLQRTGTANDLPHILGLTA 215
Query: 266 TPGSKQQTIQHIIDNLYISTLEYRNESD--------QDVSSYVHNRKIELI----EVEMG 313
+P +K +D Y+ +E+ S +++ YVH ++ + +V +G
Sbjct: 216 SPITK-------VDPKYLMKIEHNLNSRCETPRIHREELMRYVHRPELCTVNFQVDVSVG 268
Query: 314 QEAVEINNRIWEVIR----PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLP 369
+ ++ +RI E + P+ RL Q +D + S LLN+ K + +
Sbjct: 269 SDILQSLHRIVETVDIEQDPWIKRLK-----QQKDRR--SQNTLLNAMVKRKTFAISQMT 321
Query: 370 QIK--FGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKV 427
+++ + GA I +L G + A + + G+ R
Sbjct: 322 KLRRQATNIHENLGAWAADAFISEVLKRLGAKRAKQSADH---LGTLEREQENFVFETLS 378
Query: 428 KLLMQQSISHGAQSPKL-SKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT-- 484
+L + S + P L S +L+D + + IIF+ R +V + + ++
Sbjct: 379 QLPIYPSKQYWDSEPDLVSSKANLLIDLLEKEHTSDFTGIIFAQQRSTVTMLAHLISKHP 438
Query: 485 -IGDLVKATEFIGQS-----SGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDI 538
+ DL+ F+G + + ++ + K Q+ ++ R+G N++VATS+ EEG+D+
Sbjct: 439 RLKDLIVPGAFLGDAGYADRTSTITELHNTKTQRGSIDDLRSGKKNLLVATSVLEEGIDV 498
Query: 539 MEVDLVICFDANVSPLR-MIQRMGRTGRK 566
LV+CFDA +S LR IQR GR ++
Sbjct: 499 SACHLVVCFDA-ISNLRSFIQRRGRARKE 526
>gi|242059623|ref|XP_002458957.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor]
gi|241930932|gb|EES04077.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor]
Length = 1651
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 126/532 (23%), Positives = 223/532 (41%), Gaps = 93/532 (17%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK----IVFAAPSRPLV 166
R YQ + + A+ NT+ L TG GKT+IA ++I +F + I+F AP+ LV
Sbjct: 33 RRYQLDVYEVAMRQNTIAMLDTGAGKTMIAVMLIKHFGKISKANNDRKLIIFLAPTVQLV 92
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQSGTC 222
QQ E + E G +A W+ + +V +TPQVL ++
Sbjct: 93 TQQCEVIKSYTDFEVEHYHGAKG--VDQWKAHSWQQQFLKYQVMVMTPQVLLDALRQAFL 150
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLRILALTATPGSKQQT-------- 273
++ + ++ DE H ATGN+ Y ++E + + +TA+P ++
Sbjct: 151 ILDMVSLMIFDECHHATGNHPYTRIMKEFYHGSEHKPNVFGMTASPIIRKGVSSDLDCEN 210
Query: 274 ----IQHIIDNLYISTLEYRNE------SDQDVSSYVHNR---------KIELIEVEMGQ 314
+++I+D+ I + R E S ++V+ Y R ++E++ +
Sbjct: 211 QLSELENILDS-KIHAVVDREEIELCVPSAKEVNRYYEPRTVSFEDLSEELEILCSKYDG 269
Query: 315 EAVEINNRIW-------EVIRPYTSRLSA-----------IGLLQNRDYQTLSPVD---- 352
V+++NR E+ + RLS GLL + +
Sbjct: 270 LIVQLHNRSTNQYKDADEITKESRRRLSKSLAKICYCLEDAGLLCASEATKICIERGQRK 329
Query: 353 --LLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
L D Q PN P I F E I++ H++ + ++++++L+
Sbjct: 330 GWLKGGSDTTDQQSDPNGP-ILFAE--------ISMLHMKFF------QEVLDIIDKRLQ 374
Query: 411 QGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSN 470
QG A S++ + K+ G SPKL +++ V + D + R +IF +
Sbjct: 375 QGIDALLNSESGCVEAAKM--------GYISPKLYELMRVFLSF---SDSDNVRCLIFVD 423
Query: 471 FRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVA 528
+ S R I + IG L + + G SS + + K+Q+ L+ FR+G N++
Sbjct: 424 RKISARVIERTMKKIGRLSCFRVSFLTGGSS--SVDALTPKMQKDTLDSFRSGKVNLLFT 481
Query: 529 TSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQ 580
T + EEG+ I + VI FD + +Q GR ++ I I K V+
Sbjct: 482 TDVAEEGIHIPDCSCVIRFDLPRTTRSYVQSRGRARQRDSQYILMIEKGNVK 533
>gi|312069940|ref|XP_003137916.1| type III restriction enzyme [Loa loa]
gi|307766923|gb|EFO26157.1| type III restriction enzyme [Loa loa]
Length = 1032
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 121/510 (23%), Positives = 213/510 (41%), Gaps = 47/510 (9%)
Query: 107 NVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDG----KIVFAAP 161
++ +R YQ + TA NT++ PTG GKT++AA +I FR ++ P
Sbjct: 286 SIELRPYQQELVATACRGVNTIICAPTGSGKTVVAAHIILEHFRTMKAADKPSRVAILVP 345
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQ--ISPTKRASFWKTKRVFFVTPQVLEKDIQS 219
+ PLV QQ + + W M+G + RA V TPQ+ ++S
Sbjct: 346 TIPLVEQQCIMLNRYLR-KTFWVDGMSGSEPVDENGRAPNVLASHVTVFTPQIFINLLRS 404
Query: 220 ----GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV-QLRILALTATP--GSKQQ 272
+ DE H G++ Y +R L + +I+ LTA+ G+ +
Sbjct: 405 IRRDDRLYFTDFSMFIFDECHHCDGDHPYHVLMRMLHRFDGPKPQIVGLTASLPLGAGRA 464
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHN------------RKIELIEVEMGQEAVEIN 320
++ +D++ + S V ++ N ++ E + +++EI
Sbjct: 465 NVEAALDHMMDLCAKLSAHSISTVRKHMENLRYFVKPPVDDIKRAHRPEYDSFCQSLEIC 524
Query: 321 NRIWE-VIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSR-DKFRQAPPPNLPQIKFGEVEA 378
R E +P +++ ++ R +T PV + R + F L ++ G+V+
Sbjct: 525 MRKIEFAAKPELEKIAENKVINFRVEETAFPVQKSSMRYENFVGGLKNRLAELPGGKVKH 584
Query: 379 YFGALIT-LYHIRRLLSSHGIRP---AYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQS 434
++ L + R L + P AY L E + + F ++K L ++
Sbjct: 585 QLIKMLEHLGYYYRALCLSDLLPNWYAYSYLRENMAKEIFPDRRDSTTIQNQLKKLFEKF 644
Query: 435 I---------SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDI---MNAL 482
+ S + ++ KML ++ DP SR IIF R + + +N +
Sbjct: 645 VKPNELNFKESDSGEEKEILKMLHTILREQYVSDPA-SRTIIFVTTRRLAQYLSHHLNTV 703
Query: 483 ATIGDLVKATEFIGQSS-GKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
+ +A F+ S+ A GQ+ + Q+ V+E F G V+VATS+ EEGLDI
Sbjct: 704 KIVDGTNRAVGFVTSSNRSSALSGQTAEEQRTVIENFNQGTLKVLVATSVAEEGLDISAC 763
Query: 542 DLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+L+I ++ S +IQR GR +H I
Sbjct: 764 NLIIKYNNTGSERSLIQRRGRARARHSRSI 793
>gi|452979125|gb|EME78888.1| hypothetical protein MYCFIDRAFT_43585 [Pseudocercospora fijiensis
CIRAD86]
Length = 1516
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 122/523 (23%), Positives = 218/523 (41%), Gaps = 84/523 (16%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKI------------VF 158
R+YQ + + A NT+ L TG GKTLIA +++ RW D +I F
Sbjct: 71 REYQIELFERAKQENTIAVLDTGSGKTLIAVLLL----RWIIDHEIENRAKGSQAKISFF 126
Query: 159 AAPSRPLVMQQIEACHNIVG--IPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKD 216
S LV QQ + + + D T + T+ + T ++L +
Sbjct: 127 LVASVTLVYQQFAVLETNLDHKVARLCGADNTDRWDKTRWMKECYENKAIVCTAEILFQA 186
Query: 217 IQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM---SVPVQLRILALTATP-GSKQQ 272
+ G MK + L+ DEAH N++Y I++ V + RI +TA+P +K
Sbjct: 187 LSFGYLTMKQINLLIFDEAHHTKKNHSYARIIKDFYLEEEVHDRPRIFGMTASPIDAKMD 246
Query: 273 TIQ--HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEV-EMGQEAVEINNRIWEVIRP 329
IQ H ++ L S + SD +SS + K +++ + Q E +++
Sbjct: 247 VIQAAHELEALLDSKIA--TTSDMSLSSAIKKPKEQIMRYPSLPQAGFET-----PLLQA 299
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHI 389
+R S D+ F +A EV + G+ +++
Sbjct: 300 VRARYS----------------DMTQFTKIFTRA----------AEVARHLGSWCADFYL 333
Query: 390 RRLLSSHGIRPAYEMLEEKLKQGSFARFMSK-NEDIRKV----------KLLMQQSISHG 438
LS + E+K + R ++ + ++++ + ++ I+
Sbjct: 334 LDCLSDEKSKRYKLAAEQKFHARNAGREVAALDRALKRIDAAVAFAQEHRNILDTEITRD 393
Query: 439 AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD-LVKATEFIGQ 497
S K+ ++ L + F+ P +R I+F + R + R + + I +K+T IG
Sbjct: 394 RISSKVYELYRYLAEQFER--PSSNRCIVFVDKRYTARLLNSLFQRIKSPHMKSTFLIGS 451
Query: 498 -SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
++G+ S + Q VL KFR G N + ATS+ EEGLD+ + +L+I FD + ++
Sbjct: 452 GNTGQDEDNFSFRQQVMVLLKFRKGDLNCLFATSVAEEGLDVPDCNLIIRFDMYATMIQY 511
Query: 557 IQRMGRTGRKHDGRIPHIFK----------PEVQFVELSIEQY 589
+Q GR R + + H+ + EV++ ELS+ Y
Sbjct: 512 VQSRGR-ARNQNSKFIHMVENGNSIHKETVNEVRYAELSMRAY 553
>gi|46132992|ref|XP_389201.1| hypothetical protein FG09025.1 [Gibberella zeae PH-1]
Length = 1495
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 129/495 (26%), Positives = 214/495 (43%), Gaps = 76/495 (15%)
Query: 107 NVPVRDYQFAITKTALFSNTLVALPTGLG--KTLIAAVVIYNFFR--------------- 149
++ R+YQ + + A N +V LPTG G KTLI+ +++ + R
Sbjct: 68 DITPREYQIELFEAAKEKNLIVVLPTGTGSGKTLISILLLKYYIRIEVESRALGNPRKVA 127
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW----KTKRV 205
+F K+ + QI HNIV +T D G TK +W + +V
Sbjct: 128 FFLVEKVALCEQQYRFLKDQIFG-HNIV----MFTGDNRG---VTKDKKYWDDQFSSNKV 179
Query: 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP---VQLRILA 262
T +L + +G M + L+ DEAH A + Y +R + RIL
Sbjct: 180 VVCTAHILLDCLNNGFITMDQINLLIFDEAHHAKKKHDYAQIVRRYYYSTEKNKRPRILG 239
Query: 263 LTATP-GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINN 321
+TA+P SK + + LE D ++++ + +M ++A +
Sbjct: 240 MTASPVDSKAGDVAEL-------ALELEKTLDSEIAT---------LSDKMMRQATDFQV 283
Query: 322 RIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK--FGE--VE 377
+ E T + + +GL Q + L SR+K +A + G +
Sbjct: 284 HVEE-----TVKYNTLGLPDETKTQLWDSISKLVSRNKEFKASLDFTKEASTILGPWCAD 338
Query: 378 AYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQ----Q 433
Y+ LI I+RL + R A+ EKL AR E +R+V+ ++ +
Sbjct: 339 RYWQVLIDDTEIKRL--ADRTRMAFFGGGEKL----LARGDQAEEAVREVQKVVAAHEFR 392
Query: 434 SISHGAQ--SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS---VRDIMNALATIGDL 488
+IS +Q S K+ + E+LV F + K R I+F + R + + D+ + ++
Sbjct: 393 AISPQSQELSAKVKCLHEILVHAFTVDNTK--RCIVFVDQRHTACLLSDLYDQVSMAIPG 450
Query: 489 VKATEFIGQSSGKASKGQ-SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
+ A+ IGQ S ++ G S + Q + L+ FR G N + ATS+ EEG+DI DLVI F
Sbjct: 451 MNASYMIGQQSSSSTLGNMSLRKQCSTLKNFRDGVINCLFATSVAEEGIDIPSCDLVIRF 510
Query: 548 DANVSPLRMIQRMGR 562
D S ++ +Q GR
Sbjct: 511 DLYTSVIQYVQSKGR 525
>gi|301619410|ref|XP_002939087.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like [Xenopus
(Silurana) tropicalis]
Length = 624
Score = 96.7 bits (239), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 124/499 (24%), Positives = 210/499 (42%), Gaps = 73/499 (14%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+ DYQ+ + AL N ++ LPTG GKT A V + K+ F LV Q
Sbjct: 3 LHDYQWEVIAPALEGKNIIIWLPTGAGKTRAALYVAMRHLEMKRNAKVAFIVNKVHLVDQ 62
Query: 169 QIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR----VFFVTPQVLEKDIQSGTCLM 224
+ + ++G T+ F+ K V T Q+L+ + SG+ M
Sbjct: 63 HFSNEFQPHLKDKYTVVAISGD---TEHKCFFAQKTQDNDVIICTAQILQNALSSGSEEM 119
Query: 225 KY----LVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR-----ILALTATPGSKQQT-- 273
L+IDE H + Y + + + + IL LTA+PG+ + T
Sbjct: 120 HVELTDFTLLIIDECHHTHKDGVYNKLMEGYLERKICRKGKLPQILGLTASPGTGRATSF 179
Query: 274 ---IQHIID---NLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVI 327
++HI+ NL ++ + +S+ VH +E + ++ + R +
Sbjct: 180 HKAVEHILQICANL---------DTWRIMSAEVHREDLEAKAKQPNKQYDLVAQRTRD-- 228
Query: 328 RPYTSRLSAI-----GLLQNRDYQTLSPVDLLNSRDKF-RQAPPPNLPQI-KFGEVEAYF 380
P+ +L + G L+ ++ S +F Q + ++ K G VEA
Sbjct: 229 -PFGDKLKELMKTIHGYLRTAEF----------SESEFGTQVYEQKVVELEKEGAVEADR 277
Query: 381 GALITLYHIRR----LLSSHGIR--PAYEMLEEKLKQGSFARFMSKNEDIRKVKL----- 429
H+R+ LL +R AYE+L E F R + D ++L
Sbjct: 278 MKRTCALHLRKYNDSLLVHDTVRMTDAYELLAEFYVTEKFIRKQNDPTDTFLIQLFDRNQ 337
Query: 430 --LMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD 487
L++ + ++PKL+K+ E+L D F+ SR IIF+ R S + N ++
Sbjct: 338 ATLLELAHDSRFENPKLTKLEEILKDQFQFSSV--SRGIIFTRTRQSTHSLHNWISGKDY 395
Query: 488 L----VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
+K G SK +Q Q+ V+EKFR G N++V+TS+ EEGLDI + ++
Sbjct: 396 FQKMGIKTAPLTGAGYSNQSKHMTQNEQREVIEKFRKGELNLLVSTSVAEEGLDIPQCNV 455
Query: 544 VICFDANVSPLRMIQRMGR 562
V+ + + + M+Q GR
Sbjct: 456 VVRYGLMTNEIAMVQARGR 474
>gi|330797669|ref|XP_003286881.1| hypothetical protein DICPUDRAFT_150900 [Dictyostelium purpureum]
gi|325083116|gb|EGC36577.1| hypothetical protein DICPUDRAFT_150900 [Dictyostelium purpureum]
Length = 790
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 121/483 (25%), Positives = 197/483 (40%), Gaps = 55/483 (11%)
Query: 105 PVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164
P+N R YQ I K ++ + + LPTGLGKTLI+ +VI P +I+F P
Sbjct: 206 PLNKQPRPYQIEIFKESMKQDIICCLPTGLGKTLISCMVIKRMKELNPMKRIIFMVDRIP 265
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM 224
LV QQ + G+ + K ++ V + +L I + +
Sbjct: 266 LVQQQSKVIAEETGLQV-----LAAHGDSFKNTQLSQSFDVLVIIGALLINLIINNEIDL 320
Query: 225 KYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR--ILALTATPGSKQQTIQHIIDNLY 282
+ +V DEAH + + A++ + R +L LTA+P K+ +
Sbjct: 321 NHFCLIVTDEAHHIVKGHPFAVALKHFPEIERTNRPKLLGLTASPAGKKD---------F 371
Query: 283 ISTLEYRNESDQDVSSYVHNRKIE----LIEVEMGQE-----AVEINNRIWEVIRPYTSR 333
ISTL S + +S H + I+ LIE + + +++NN + +
Sbjct: 372 ISTL----ISLKVISRASHCKLIKAPHHLIEPHLNSKNTIVYPIKVNNLERWCLDIVGNI 427
Query: 334 LSAIGLLQNRDYQTLSPVD-LLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392
+ I L ++ + LS D L R+K + F + Y
Sbjct: 428 MEEIQLSESALNELLSSADETLVERNK------------NIIDFLISFSNKLDTYMNFGD 475
Query: 393 LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKV----KLLMQQSISHGAQSPKLSKML 448
S G+ E L +++ AR K D+ +L+ Q +H L+ +
Sbjct: 476 FSDTGVSNLKEFLNKEISNIPDARIKGKLRDLLNTIPDDELIAQ---NHSKLKMALTILN 532
Query: 449 EVLVDHFKTKDPKHSRVIIFSNFRGS---VRDIMNALATIGD--LVKATEFIGQSSGKAS 503
E + + R IIF R S + +I+N + GD +K T +G S K++
Sbjct: 533 EFYQKNRNNDGSSNFRAIIFVKTRKSAARLVEILNVIKNKGDFSFLKPTIVVGHGS-KSN 591
Query: 504 KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
G S Q+ +++FR N+IVATS+ EEG D+ E +LVI D + IQ GR
Sbjct: 592 DGMSISKQKDAIDRFRQDKCNLIVATSVVEEGFDVPECNLVIRLDPPTTVTANIQSRGRL 651
Query: 564 GRK 566
K
Sbjct: 652 RSK 654
>gi|301612421|ref|XP_002935717.1| PREDICTED: probable ATP-dependent RNA helicase DDX58-like [Xenopus
(Silurana) tropicalis]
Length = 1032
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 122/510 (23%), Positives = 221/510 (43%), Gaps = 62/510 (12%)
Query: 108 VPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPD---GKIVFAAPSR 163
V +R YQ + K A NT++ PTG GKTL++ V+ + P+ GK++F A
Sbjct: 260 VKLRKYQEELAKPAFTGKNTMICAPTGSGKTLVSLVICKHHLECMPNGKKGKVLFMATKV 319
Query: 164 PLVMQQIEA-CHNIVG--IPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
P+ QQ + C G E T + P + + +TPQ+L +QSG
Sbjct: 320 PVYEQQKDVFCKYFEGSRYKVEGVSGETAENFPV--GLVIENSDIIILTPQILVNCLQSG 377
Query: 221 TC-LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL------RILALTATPGSKQ-- 271
T + ++ DE H GN+ Y + + + + + +I+ LTA+ G+ +
Sbjct: 378 TVPSISVFSMMIFDECHNTIGNHPYNVLMFSYLDLKLNMPGVALPQIIGLTASVGTGKAK 437
Query: 272 ------QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQE-------AVE 318
I + +L I + E ++++ V + + I + +E E
Sbjct: 438 SLPEAIHYITRLCASLNIEVISTVKEHKEELAETVF-KPTKSISIAPQRENDSFTAIMSE 496
Query: 319 INNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEA 378
I + ++ + + L ++ +QNR Y T + K + Q+ E
Sbjct: 497 IMSETEKMAKDFYPELYSMSNIQNRSYGTQKYEQWIVDTQK-----KCCVLQMDDKNKEM 551
Query: 379 YFGALITLY--HIRRLLSSHGI------RPAYEMLE---EKLKQGSFARFMSKNEDIRKV 427
+ + Y H+R+ S I + A + LE +K GSF K ++ +
Sbjct: 552 RICSSLFTYTEHLRKYNDSIMINDDARTKDALDFLENFFNNMKNGSFNEIEQKLYNMFQD 611
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT--- 484
KL IS +PKL + L+ ++D ++P+ +R ++F R +++AL T
Sbjct: 612 KLPQLLDISKNNINPKLEE-LQFILDESYHENPE-TRSLLFVK----TRSLVSALKTWIE 665
Query: 485 ---IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR-AGGYNVIVATSIGEEGLDIME 540
+ +K IG+S S G + Q+ LE F+ + +++ATS+ +EG+DI
Sbjct: 666 ENPLLQFLKPEILIGRSKRNESLGMTLSSQKGALEAFKNSAESKLLIATSVADEGIDIQA 725
Query: 541 VDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
+LV+ ++ + +MIQ GR GR D +
Sbjct: 726 CNLVLLYEYVGNVTKMIQVRGR-GRAKDSK 754
>gi|121807816|sp|Q2VF18.1|DCL2_CRYPA RecName: Full=Dicer-like protein 2; Includes: RecName:
Full=Endoribonuclease DCL-2; Includes: RecName:
Full=ATP-dependent helicase DCL-2
gi|77632776|gb|ABB00357.1| dicer-like protein 2 [Cryphonectria parasitica]
Length = 1451
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 126/501 (25%), Positives = 206/501 (41%), Gaps = 68/501 (13%)
Query: 106 VNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV-FAAPSRP 164
V + R YQ + + +L N + A+ TG GKT +A + I P+G++V F P+
Sbjct: 59 VKMDARAYQLEMLEASLKENIICAMDTGSGKTHVAILRIKAELEEMPEGQVVWFLTPTVS 118
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTG-----QISPTKRASFWKTKRVFFVTPQVLEKDIQS 219
L QQ IP T +TG S T +V TPQVL +
Sbjct: 119 LCAQQYAVVK--AQIPSVQTKIVTGADKVDSWSSTTWDGALLNVKVIITTPQVLLDALLH 176
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM--------SVPVQLRILALTATPG--- 268
G + L +V DEAH N+AY ++E VP RIL LTA+P
Sbjct: 177 GFVNISSLALMVFDEAHHCNKNHAYSRVMKEFYWESKTKHEPVP---RILGLTASPVVRS 233
Query: 269 --SKQQTIQHIIDNLYISTLEYR-----NESDQDVSSYVHNRKIELIEVEMGQEAVEI-- 319
S + ++ +D + S +R N + S ++N K++ + ++
Sbjct: 234 DISSLKRLESTLDAVCRSPTRHREELIANSQRPALFSIIYNPKLQPYAAGFSESLTKLMA 293
Query: 320 -NNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEA 378
N++ + PY L A + +R + L + + + Q + + + E+
Sbjct: 294 ARNKLNILEDPYVVSLRA--EISDRSRRKLEKA--IKEKRTYVQDTMKSFCR-RSMEMAK 348
Query: 379 YFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSI--- 435
GA + I S IR L +QG+ ++ E I ++ +I
Sbjct: 349 ELGAWAADWFI-----SEAIR---LFLAGIYRQGASSKSFRDAEVIFLARVFQDANIEPP 400
Query: 436 ----SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT------- 484
+H S K+ +++EVL+++ K +R I F R + + + L T
Sbjct: 401 PPLTTHSGLSEKVQRIIEVLLNY-----DKDARAICFVKERATTVVLSHILTTHPEVSSK 455
Query: 485 --IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVD 542
IG +V + G ++ Q LE FR G N++VATS+ EEG+D+ +
Sbjct: 456 FRIGTMVGTSFVPGVKRDFLDLPETGGSQ--CLEAFREGRKNMLVATSVLEEGIDVPACN 513
Query: 543 LVICFDANVSPLRMIQRMGRT 563
L+ICFD + IQR GR
Sbjct: 514 LIICFDKPNNLRAFIQRRGRA 534
>gi|353252003|pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
gi|353252004|pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 125/515 (24%), Positives = 227/515 (44%), Gaps = 88/515 (17%)
Query: 111 RDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R YQ + + A+ N L+ PTG GKT ++ ++ + F+ P G K+VF A P+
Sbjct: 250 RSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVY 309
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ +++ GI E S + + VTPQ+L +
Sbjct: 310 EQQKNVFKHHFERQGYSVQGISGE-------NFSNVSVEKVIEDSDIIVVTPQILVNSFE 362
Query: 219 SGTCL-MKYLVCLVIDEAHRATGNYAYCTAIRELM----SVPVQL-RILALTATPG---- 268
GT + ++ DE H TGN+ Y + + + QL +IL LTA+ G
Sbjct: 363 DGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNA 422
Query: 269 -SKQQTIQHI---IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
+ ++TI+HI L I + E+ Q++ +++ +I++ V+ I+N
Sbjct: 423 KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR-----RIHNPFA 477
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLL--NSRDKFRQAPPPN----------LPQIK 372
+I S A+ +T++ VD L NS+ F + L Q++
Sbjct: 478 AIISNLMSETEAL-------MRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE 530
Query: 373 FGEVEAYF--GALITLYHIRR----LLSSHGIR--PAYEMLEE-----------KLKQGS 413
E E+ I H+R+ L+ S R A L E +L+Q
Sbjct: 531 DKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHL 590
Query: 414 FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRG 473
A+F K + L+ S ++PKL +++ +L D ++ +P+ +R ++F+ R
Sbjct: 591 TAKFQEKEPE------LIALSKDETNENPKLEELVCILDDAYRY-NPQ-TRTLLFAKTRA 642
Query: 474 SVRDIMNALAT--IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN-VIVATS 530
V + + I + +K +G+ + G + Q+ VL+ F+ N +++ATS
Sbjct: 643 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS 702
Query: 531 IGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
+ +EG+DI++ +LV+ ++ + + +MIQ GR GR
Sbjct: 703 VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR 736
>gi|295673975|ref|XP_002797533.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280183|gb|EEH35749.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1450
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 122/520 (23%), Positives = 217/520 (41%), Gaps = 94/520 (18%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKI---------VFAAP 161
R YQ + + +L N ++A+ TG GKT IA + I + + K+ F AP
Sbjct: 31 RAYQLEMLEASLKENIIIAMDTGSGKTQIAILRIRHELETCTEDKVRKFGLKEFVWFLAP 90
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK----------RVFFVTPQ 211
+ L QQ H I I Q+ ++ T + + + +W TK R+ TPQ
Sbjct: 91 TVALADQQ----HKI--ISQQLSVYQTRLLLGSDKVHYWSTKKIWDDILLNIRIVVSTPQ 144
Query: 212 VLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL--------RILAL 263
+L + G M + LV DEAH G T ++ +Q IL L
Sbjct: 145 ILLDALSHGFVTMSRISLLVFDEAHHCDGFSPANTIMQRFYHEQLQRTGTKTDLPHILGL 204
Query: 264 TATPGSKQ--QTIQHIIDNLYISTLEYRNESDQDVSSYVHN--------RKIELIEVEMG 313
TA+P ++ ++++ + NL + E +++ YVH R LI +M
Sbjct: 205 TASPVTRADPESLKKVEKNLN-ARCETPRIHREELMRYVHRPELYTVKFRTDSLIHSDML 263
Query: 314 QEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKF 373
Q I + P+ RL R S LL++ +K + L ++
Sbjct: 264 QNLSRIIGTVDIEKDPWIKRL-------RRQEDRRSQEKLLHALEKRKTHCLSQLSKL-- 314
Query: 374 GEVEAYFGALITLYHIRRLLSSHG----------IRPAYEMLEEK---LKQGSFARFMSK 420
+R+ +S H I E LE K +Q F + +
Sbjct: 315 ---------------LRQAISVHDDLGPWAADAFISEVIERLETKRGMYQQVEFHSSLDR 359
Query: 421 NEDIRKVKLLMQQSIS-----HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
E+ ++L + SIS ++S +S + +LV+ +++ IIF+ R +V
Sbjct: 360 EEEAFISEVLSELSISPVKQDWDSESNVVSTKVNLLVELLESEHTADFTGIIFAQQRATV 419
Query: 476 RDIMNALAT---IGDLVKATEFIGQS-----SGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
+ + ++ + D++ + F+G + + ++ + Q+ ++ R+G N+++
Sbjct: 420 TMLSHLISKHPRLKDIIVSGAFLGDACYASRTSTITEVHDTRSQKGSIDDLRSGKKNLLI 479
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH 567
ATS+ EEG+D+ LV+CFDA + IQR GR ++H
Sbjct: 480 ATSVLEEGIDVSACHLVVCFDAIKNLRSFIQRRGRARKEH 519
>gi|291333649|gb|ADD93340.1| type III restriction enzyme res subunit family protein [uncultured
archaeon MedDCM-OCT-S11-C441]
Length = 229
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 9/210 (4%)
Query: 122 LFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQ 181
+ +TL+ LPT GKT +A + I G + AP+ L Q +E ++
Sbjct: 1 MAGSTLLILPTAAGKTAVAWMSIVERME-QSMGWALVIAPTVALSNQHLENALPVLSKTD 59
Query: 182 EWT-IDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240
EW I ++GQ + +KR W ++ F TPQV+ D+ +G ++ LV+DEAH TG
Sbjct: 60 EWNPIVLSGQQTASKRPELWNGSKLVFATPQVVRNDVANGVLSLEECCLLVVDEAHHCTG 119
Query: 241 NYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYV 300
+A +S ILA TA+PGS+++ + I L I + R D ++ ++
Sbjct: 120 EHAMAEVAEMYLSQSKNPLILATTASPGSRKEQVHEICRRLKIQKIHLRTREDPMLAEFL 179
Query: 301 HNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
++E EMG V + + I +++ P+
Sbjct: 180 AELEVE----EMG---VAVPSEIRDLVEPF 202
>gi|297526361|ref|YP_003668385.1| type III restriction protein res subunit [Staphylothermus
hellenicus DSM 12710]
gi|297255277|gb|ADI31486.1| type III restriction protein res subunit [Staphylothermus
hellenicus DSM 12710]
Length = 612
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 109/481 (22%), Positives = 191/481 (39%), Gaps = 93/481 (19%)
Query: 104 YPVNVPVRDYQFAITKTALFSN-TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ + V RDYQ K AL + + + +PTG GKTLIA + K++ P+
Sbjct: 4 FNLKVKPRDYQIEAAKWALSNKRSTIVMPTGSGKTLIAVLFSKELLEKKLANKVLVLEPT 63
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
R LV Q +GI + + G+ P KR W+ +V TP+ D++
Sbjct: 64 RILVEQTARYFEKTLGIK---ALSIHGRYPPEKRIELWRKAKVAAATPETALNDVKQ--V 118
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTA-TPGSKQQTIQHIIDNL 281
+ +++DE H TG AY ++ ++ V L L+A P S++ I+
Sbjct: 119 IQNNYDAIIVDECHHTTGKDAYAKFMK--ITEKVFKWRLGLSAHIPKSRRHEIER----- 171
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
YI + + +D+ + YV + E+ E E+ ++ + E YT + + L
Sbjct: 172 YIGKIRIWSWADERIRKYVPDWIGEIYEAELNDAEKQVLEGLEEARLEYTGKYRGLVNLA 231
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPA 401
R + + L S +K E ++++ HI+ +L + +RP
Sbjct: 232 IRWFVRDGALALRESLEK-----------------ETLLASILS--HIKPMLENRKVRPL 272
Query: 402 YEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPK 461
+++ + R ++ +E K + + + V+V + K
Sbjct: 273 HKL-------DALKRVLNDHEGFNKAIIFVDR----------------VIVAEYLGKKLM 309
Query: 462 HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG 521
H +I GK G + VL + +
Sbjct: 310 HYNPVII------------------------------VGKTRLGTDLR---EVLRRAHSS 336
Query: 522 GYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR----TGRKHDGRIPHIFKP 577
++V+TS GEEG+D+ E DL+I + SPLR IQR GR TG+K + +I P
Sbjct: 337 ETRIVVSTSAGEEGIDLPEADLLIIWSNVASPLRFIQRHGRILRLTGKKGLKFVAYIATP 396
Query: 578 E 578
+
Sbjct: 397 D 397
>gi|217069801|gb|ACA61272.1| retinoic acid inducible protein I [Anas platyrhynchos]
gi|388897634|gb|AFK82315.1| retinoic acid inducible protein I [Anas platyrhynchos]
Length = 933
Score = 94.4 bits (233), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 125/515 (24%), Positives = 226/515 (43%), Gaps = 88/515 (17%)
Query: 111 RDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R YQ + + A+ N L+ PTG GKT ++ ++ + F+ P G K+VF A P+
Sbjct: 247 RSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVY 306
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ +++ GI E S + + VTPQ+L +
Sbjct: 307 EQQKNVFKHHFERQGYSVQGISGE-------NFSNVSVEKVIEDSDIIVVTPQILVNSFE 359
Query: 219 SGTCL-MKYLVCLVIDEAHRATGNYAYCTAIRELM----SVPVQL-RILALTATPG---- 268
GT + ++ DE H TGN+ Y + + + QL +IL LTA+ G
Sbjct: 360 DGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNA 419
Query: 269 -SKQQTIQHI---IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
+ ++TI+HI L I + E+ Q++ +++ +I++ V+ I+N
Sbjct: 420 KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR-----RIHNPFA 474
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLL--NSRDKFRQAPPPN----------LPQIK 372
+I S A+ +T+ VD L NS+ F + L Q++
Sbjct: 475 AIISNLMSETEAL-------MRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE 527
Query: 373 FGEVEAYF--GALITLYHIRR----LLSSHGIR--PAYEMLEE-----------KLKQGS 413
E E+ I H+R+ L+ S R A L E +L+Q
Sbjct: 528 DKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHL 587
Query: 414 FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRG 473
A+F K + L+ S ++PKL +++ +L D ++ +P+ +R ++F+ R
Sbjct: 588 TAKFQEKEPE------LIALSKDETNENPKLEELVCILDDAYRY-NPQ-TRTLLFAKTRA 639
Query: 474 SVRDIMNALAT--IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN-VIVATS 530
V + + I + +K +G+ + G + Q+ VL+ F+ N +++ATS
Sbjct: 640 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS 699
Query: 531 IGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
+ +EG+DI++ +LV+ ++ + + +MIQ GR GR
Sbjct: 700 VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR 733
>gi|379987682|gb|AFD22621.1| dicer-like 4 protein [Nicotiana attenuata]
Length = 1622
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 131/529 (24%), Positives = 225/529 (42%), Gaps = 80/529 (15%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKI-VFAAPSRPLVM 167
R YQ + K AL N +V L TG GKT IA ++IY + P I VF AP+ LV
Sbjct: 52 RKYQMDLCKKALEENVVVYLGTGCGKTHIAVLLIYEMGQLIRKPQKSICVFLAPTVALVQ 111
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQSGTCL 223
QQ + + + G+ K W+ + V +TPQ+L ++
Sbjct: 112 QQAKVIEDSIDFK---VGTYCGKSKHLKSHEDWEKEMEQYEVLVMTPQILLHNLSHCYIR 168
Query: 224 MKYLVCLVIDEAHRAT--GNYAYCTAIR-----ELMSVPVQLRILALTATPGSKQQTIQH 276
++++ L+ DE H A ++ Y ++ +++ +P RI +TA+P S +
Sbjct: 169 IEFIALLIFDECHYAQVESDHPYAEIMKIFYKPDVVKLP---RIFGMTASPISGKGATVE 225
Query: 277 IIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSA 336
++ L S + Y E ++ +V + K+ + G + + Y+ +L
Sbjct: 226 GLETLLRSKV-YSVEDKDELEQFVASPKVNVYYYGPGTACL---------TKAYSQKLEE 275
Query: 337 IG-----LLQNR--DYQTLSPVDLLNSRDKFRQAPPPNLPQIK----FGEVEAYFGALIT 385
I +L + D+ TL N++ ++ + ++ FG ++A L
Sbjct: 276 IKHQCVMVLHKKAVDHSTLR-----NTKKMLKRLHGHLIFSLENLGVFGALQASCILLKG 330
Query: 386 LYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMS------KNEDIRKVKLLMQQSISHGA 439
++ R + + + + L ++ F S N D+ +V++L + S
Sbjct: 331 DHYERHQMVEADVNASDDSLCDRYLSQVATVFTSGCAKDGMNPDLTRVEVLKEPYFS--- 387
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLV--KATEFIGQ 497
KL +++ +L + D K IIF N + R + L + L K +G
Sbjct: 388 --KKLLRLIGILSNFGVQPDMK---CIIFVNRIVTARSLSYMLQHLKVLSSWKCGFLVGV 442
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
SG K S+K +L KFR+G N++VAT +GEEGLDI LVI FD + I
Sbjct: 443 HSG--LKSMSRKNTNIILNKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFI 500
Query: 558 QRMGRTGRKHDGRIPHIFKPEVQFV-------ELSIEQYVSRGKKVKDD 599
Q GR R+P K E F+ EL++ ++ SR + +D
Sbjct: 501 QSRGR------ARMP---KSEYAFLVDSDNQRELNLIEHFSRNEARMND 540
>gi|308455471|ref|XP_003090269.1| hypothetical protein CRE_17662 [Caenorhabditis remanei]
gi|308265013|gb|EFP08966.1| hypothetical protein CRE_17662 [Caenorhabditis remanei]
Length = 907
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 126/527 (23%), Positives = 226/527 (42%), Gaps = 83/527 (15%)
Query: 108 VPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPS 162
+ +R+YQ + + A+ NT+V PTG GKT++AA ++ N F R K +F AP+
Sbjct: 173 INLRNYQVELCRLAVQGINTIVTAPTGTGKTVVAANIVKNHFEVRAREEKTFKALFLAPN 232
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL-------EK 215
++ QQ + ++ + + I SPT++A + + TPQ++ E
Sbjct: 233 TTILQQQADRLNHFLAHSYDLKICQGSDNSPTRQAVL--SNDIIVATPQMIVNLCNEHED 290
Query: 216 DIQSGTCLMKYLVCLVI---DEAHRATGNYAYCTAIRELMSVPVQL---------RILAL 263
++ + YL I DE H N Y +RE ++ +I+ L
Sbjct: 291 ELSEFSNEKFYLSTFSIILFDECHSTVNNSPYANIMREYHTLKNMGTMPDNHELPQIVGL 350
Query: 264 TATPGSK-----QQTIQHI------IDNLYISTL-EYRNESD-------QDVSSYVHN-- 302
TA+ G+ ++ IQHI +D +ST+ EY +E + + S+ N
Sbjct: 351 TASLGTGDANNVEKVIQHIASMCALLDVEKLSTVCEYADELQMFSPIIPEKIYSFEKNKD 410
Query: 303 ----RKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRD 358
R EL++ M +N + + SR + V LN
Sbjct: 411 GSSGRFAELVKQIM-------DNITMMLETAFVSREEYSKVTNGEKTPAKDHVAYLNWLS 463
Query: 359 KFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFM 418
+++ Q + L Y + S+ R A++ +EK+K+ RF+
Sbjct: 464 CLKRSVAEQNFQGNRNNINEALNMLDICYRSQSFNSNFNPRTAFKYFDEKVKEQE--RFL 521
Query: 419 SKNEDIRKVKLLMQQSISHGAQ--------SPKLSKMLEVLVDHFKTKDPKHSRVIIFSN 470
++ ++K ++ Q Q +P + K+ ++L ++ + + ++SR IIF
Sbjct: 522 TE-----RMKEVLHQYYPRLEQLGSDVPIENPMILKIEDLLTENHR--ENQNSRAIIFVQ 574
Query: 471 FRGSVRDIMNALATIGDLVKA---TEFI----GQSSGKASKGQSQKVQQAVLEKFRAGGY 523
R + N L +L+ T++I + G S+ Q L++F +GG
Sbjct: 575 TRYDAITLKNILCDNENLLSQNIRTDYILGLNKTTEGSEDSAISRSDQVEKLKQFGSGGI 634
Query: 524 NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
V+V+TS+ EEGLDI E +LVI ++ + + +QR GR GR + R
Sbjct: 635 RVLVSTSVAEEGLDISECNLVIKYNYATNVIAHVQRRGR-GRANGSR 680
>gi|353251998|pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
gi|353251999|pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
gi|353252000|pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
gi|353252001|pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 125/515 (24%), Positives = 226/515 (43%), Gaps = 88/515 (17%)
Query: 111 RDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R YQ + + A+ N L+ PTG GKT ++ ++ + F+ P G K+VF A P+
Sbjct: 250 RSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVY 309
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ +++ GI E S + + VTPQ+L +
Sbjct: 310 EQQKNVFKHHFERQGYSVQGISGE-------NFSNVSVEKVIEDSDIIVVTPQILVNSFE 362
Query: 219 SGTCL-MKYLVCLVIDEAHRATGNYAYCTAIRELM----SVPVQL-RILALTATPG---- 268
GT + ++ DE H TGN+ Y + + + QL +IL LTA+ G
Sbjct: 363 DGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNA 422
Query: 269 -SKQQTIQHI---IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
+ ++TI+HI L I + E+ Q++ +++ +I++ V+ I+N
Sbjct: 423 KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR-----RIHNPFA 477
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLL--NSRDKFRQAPPPN----------LPQIK 372
+I S A+ +T+ VD L NS+ F + L Q++
Sbjct: 478 AIISNLMSETEAL-------MRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE 530
Query: 373 FGEVEAYF--GALITLYHIRR----LLSSHGIR--PAYEMLEE-----------KLKQGS 413
E E+ I H+R+ L+ S R A L E +L+Q
Sbjct: 531 DKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHL 590
Query: 414 FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRG 473
A+F K + L+ S ++PKL +++ +L D ++ +P+ +R ++F+ R
Sbjct: 591 TAKFQEKEPE------LIALSKDETNENPKLEELVCILDDAYRY-NPQ-TRTLLFAKTRA 642
Query: 474 SVRDIMNALAT--IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN-VIVATS 530
V + + I + +K +G+ + G + Q+ VL+ F+ N +++ATS
Sbjct: 643 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS 702
Query: 531 IGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
+ +EG+DI++ +LV+ ++ + + +MIQ GR GR
Sbjct: 703 VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR 736
>gi|302794558|ref|XP_002979043.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii]
gi|300153361|gb|EFJ20000.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii]
Length = 1686
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 120/517 (23%), Positives = 205/517 (39%), Gaps = 118/517 (22%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGK--IVFAAPSRPLV 166
R YQ + + AL N +V L TG GKT+IA ++I +F P K VF AP+ LV
Sbjct: 356 RGYQKDVFQRALKENIIVNLGTGTGKTMIAIMLIQSFEDRLSMPQEKRIAVFLAPTVNLV 415
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK---------RVFFVTPQVLEKDI 217
+QQ A + +T+ G K W K +V +TPQV +
Sbjct: 416 IQQARAI-------ESFTVLKVGDYYGDKGVDSWSVKQWQAEVDSHQVLVMTPQVFLNAL 468
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV---QLRILALTATPGSKQQTI 274
+ ++++ LV+DE H A N+ Y ++ V + +I +TA+P ++
Sbjct: 469 GTSALKLEFVEILVMDECHHAHKNHPYALIMKTHYHVSCLKSKPKIFGMTASPVIQKGVS 528
Query: 275 QHIIDNLYISTLE-------YRNESDQDVSSYVHN-------------------RKIELI 308
N ++ LE Y E ++ Y N +E++
Sbjct: 529 SSYDCNCKLTVLESILDAKVYTVEDKSEIEEYYPNPTQYKEYYDRPKQSFSSIQTDLEIL 588
Query: 309 EVEMGQEAV----------EINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRD 358
+ + EA +IN I ++ L +GLL L V++L SR+
Sbjct: 589 KDRLNSEAACNCSEYEQQNKINKSIDRLLLSINHCLVDLGLL-----PALLAVEILKSRN 643
Query: 359 KFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFM 418
K + +H++ +P + EE++K RF+
Sbjct: 644 K-------------------------STFHLK-------WKPDVSLEEEEVKTSLKERFL 671
Query: 419 SKNEDIRKVKLLMQQS------ISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFR 472
I + + +S ++ G SPK+ +L+VL + + + R I+F
Sbjct: 672 QNVSSIPRFSQVSSRSYPTLEEMTSGTLSPKVLVLLDVLE---RLRGMTNMRCIVF---- 724
Query: 473 GSVRDIMNALATIGDLVKATEFIGQ------SSGKASKGQSQKVQQAVLEKFRAGGYNVI 526
V ++ A+A + L+ F+ + + + ++ QQ VL F G N++
Sbjct: 725 --VERVIVAMA-LAKLISGLSFLSHLRCDYMTGVRDTDARNPTQQQEVLHSFAGGKLNLL 781
Query: 527 VATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
+ATS+ EEGLD+ VI FD + +Q GR
Sbjct: 782 IATSVAEEGLDVQACCAVIRFDVCQTLRSHVQSRGRA 818
>gi|170593727|ref|XP_001901615.1| Type III restriction enzyme, res subunit family protein [Brugia
malayi]
gi|158590559|gb|EDP29174.1| Type III restriction enzyme, res subunit family protein [Brugia
malayi]
Length = 904
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 127/489 (25%), Positives = 213/489 (43%), Gaps = 64/489 (13%)
Query: 107 NVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDG----KIVFAAP 161
++ +R YQ + +TA NT++ PTG GKT++AA +I FR ++ P
Sbjct: 217 SIELRPYQQELVETACRGMNTIICAPTGSGKTVVAAHIILEHFRAMKAADKPSRVAMLVP 276
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQ--ISPTKRASFWKTKRVFFVTPQV---LEKD 216
+ PLV QQ + + W M+G + RA V TPQ+ L ++
Sbjct: 277 TIPLVEQQCIMLNRYLR-KTFWVDGMSGSEPVDENGRAPNVLASHVTVFTPQIFINLLRN 335
Query: 217 IQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP--GSKQQTI 274
I+ LM+ L HR G + +I+ LTA+ G+ + ++
Sbjct: 336 IRRDDLLMRML--------HRFDGP---------------KPQIVGLTASLPLGAGRASV 372
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIEL-IEVEMGQEAVE--INNRIWEVIRPY- 330
+D EY + S S + RKIEL I+ E+G+ A +N ++ E + P
Sbjct: 373 DAALDIKRAHRPEYDSFSQ---SLEICMRKIELAIKPELGRIAENKILNFKVEETVFPAH 429
Query: 331 ---TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY 387
T S +G L+NR ++L + DK + L + + L+ +
Sbjct: 430 RNSTRYESFVGGLKNR------LIELPD--DKLKHQLIKMLEHLGYYYRALCLSDLLPNW 481
Query: 388 HIRRLLSSHGIRPAYEMLEEKLK-QGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSK 446
+ L + + + ++ Q A+ K ++ +L +++ S + ++ K
Sbjct: 482 YAYSYLCENMTKEIVQDAGDRTTIQNQLAKLFEKF--VKSDELNFKENDS--GEEKEILK 537
Query: 447 MLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDI---MNALATIGDLVKATEFIGQSS-GKA 502
ML ++ DP SR IIF R + + +NA+ + +A FI S+ A
Sbjct: 538 MLHTILLEQYVSDPA-SRTIIFVTTRKLAQYLSHHLNAVKIVDRTSRAVGFITSSNRSSA 596
Query: 503 SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
GQ+ + Q+ V+E F G V+VATS+ EEGLDI +L+I ++ S +IQR GR
Sbjct: 597 LNGQTTEEQRTVIENFNQGTLKVLVATSVAEEGLDISACNLIIKYNNTGSERSLIQRRGR 656
Query: 563 TGRKHDGRI 571
KH I
Sbjct: 657 ARAKHSKSI 665
>gi|397529815|gb|AFO53518.1| dicer-like protein 4 [Solanum lycopersicum]
Length = 1620
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 133/521 (25%), Positives = 216/521 (41%), Gaps = 65/521 (12%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKI-VFAAPSRPLVM 167
R YQ + K AL N +V L TG GKT IA ++IY P I VF AP+ LV
Sbjct: 49 RKYQMDLCKKALEENVVVYLGTGSGKTHIAVLLIYEMGHLIKKPQKSICVFLAPTVALVQ 108
Query: 168 QQIEACHNIVGIPQEWTIDM-----TGQISPTKRASFWKTK----RVFFVTPQVLEKDIQ 218
QQ + E +ID G+ K W+ + V +TPQ+L ++
Sbjct: 109 QQAKVI--------EESIDFKVGTYCGKSKHLKSHQDWEKEMEQYEVLVMTPQILLHNLS 160
Query: 219 SGTCLMKYLVCLVIDEAHRATGN----YAYCTAIRELMSVPVQLRILALTATPGSKQQTI 274
++++ L+ DE H A YA I V Q RI +TA+P S +
Sbjct: 161 HCYIRIEFIALLIFDECHYAQVESDHPYAEIMKIFYKPDVVKQPRIFGMTASPISGKGAT 220
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL 334
++ L S + Y E ++ +V + K+ + + G + Y+ +L
Sbjct: 221 VEGLETLLRSKV-YSVEDKDELEQFVASPKVNVYQYGPGSSC---------HTKAYSQKL 270
Query: 335 SAIGLLQNRDYQTLSPVD--LLNSRDKFRQAPPPNLPQIK-FGEVEAYFGALITL---YH 388
I ++ VD L N++ ++ + ++ G + A + I L +H
Sbjct: 271 EEIKHQCVKELHK-KAVDSTLRNTKKMLKRLHGHLIFSLENLGVLGALQASCILLKGDHH 329
Query: 389 IRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK-NEDIRKVKLLMQQSISHGAQSPKLSKM 447
R + + + + L ++ F S +D L + + + S KL ++
Sbjct: 330 ERHQMVEAEVNASDDSLCDRYLSQVDTVFTSGCAKDGMNPDLALMEVLKEPYFSKKLLRL 389
Query: 448 LEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLV--KATEFIGQSSGKASKG 505
+ +L + D K I+F N + R + L + L K +G SG K
Sbjct: 390 IGILSNFGVQPDMK---CIVFVNRIVTARSLSYILQHLKILSSWKCGFLVGVHSGL--KS 444
Query: 506 QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
S+K +L+KFR+G N+++AT +GEEGLDI LVI FD + IQ GR
Sbjct: 445 MSRKNTNIILDKFRSGELNLLIATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR--- 501
Query: 566 KHDGRIPHIFKPEVQFV-------ELSIEQYVSRGKKVKDD 599
R+P K E F+ EL + ++ +R + DD
Sbjct: 502 ---ARMP---KSEYAFLVDRGNQRELDLIEHFTRSEAQMDD 536
>gi|356565129|ref|XP_003550797.1| PREDICTED: dicer-like protein 4-like [Glycine max]
Length = 1636
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 123/492 (25%), Positives = 205/492 (41%), Gaps = 70/492 (14%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKI-VFAAPSRPLVM 167
R YQ + K A+ N +V L TG GKT IA +++Y P I VF AP+ LV
Sbjct: 51 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMYGMGHLIRKPQKNICVFLAPTVALVH 110
Query: 168 QQIEACHNIVGIPQEWTID-MTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQSGTC 222
QQ + ++ + + G KR W+ + V +TPQ+L ++
Sbjct: 111 QQAK----VIADSTNFKVGTYCGSSKRLKRHQDWEQEIGQYEVLVMTPQILLHNLSHCFI 166
Query: 223 LMKYLVCLVIDEAHRA--TGNYAYCTAIRELM-----SVPVQLRILALTATP-----GSK 270
M+ + L+ DE H A N+AY ++ VP RI +TA+P S
Sbjct: 167 TMEMIALLIFDECHHAQVKSNHAYAVIMKVFYKSNSSKVP---RIFGMTASPVVGKGASS 223
Query: 271 QQTIQHIIDNL-YISTLEYRNESDQDVSSYVHNRKIELIE-VEMGQEAVEINNRIWEVIR 328
+ + I++L +I + + D+++ S+V I + V + +I E+ R
Sbjct: 224 EANLAKSINSLEHILDAKVYSVEDKELQSFVTTPVINIYHYVSTASGETSLYLKIEEIKR 283
Query: 329 PYTSRLSAIGLLQNRDYQT-LSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY 387
+ L D+Q ++ LLN + FG +
Sbjct: 284 QCIANLGR----SIEDHQKRMNAKKLLNRMHD----------NVIFGLQNLGIWGALQAS 329
Query: 388 HI---------RRLLSSHGIRPAYEMLEEKLKQG-----SFARFMSKNEDIRKVKLLMQQ 433
HI L+ + G + ++ L Q S + D+ V++L +
Sbjct: 330 HILLSGDRSERHELVEAEGNSSDDSLCDKYLAQAAELFTSQCMIGDRVTDLSSVEILKEP 389
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKA 491
S KL +++ +L +F+ + K+ + IIF N + R + L + L ++
Sbjct: 390 FF-----SAKLLRLIGIL-SNFRLQ--KNMKCIIFVNRIVTARSLSYILQKLKLLRQWRS 441
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
+G +G K S+K +++KFR+G N++VAT +GEEGLDI LVI FD
Sbjct: 442 DFLVGVHAGL--KSMSRKTMNIIVDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 499
Query: 552 SPLRMIQRMGRT 563
+ IQ GR
Sbjct: 500 TVASFIQSRGRA 511
>gi|353251997|pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
gi|353252013|pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
gi|353252014|pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 125/515 (24%), Positives = 226/515 (43%), Gaps = 88/515 (17%)
Query: 111 RDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R YQ + + A+ N L+ PTG GKT ++ ++ + F+ P G K+VF A P+
Sbjct: 9 RSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVY 68
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ +++ GI E S + + VTPQ+L +
Sbjct: 69 EQQKNVFKHHFERQGYSVQGISGE-------NFSNVSVEKVIEDSDIIVVTPQILVNSFE 121
Query: 219 SGTCL-MKYLVCLVIDEAHRATGNYAYCTAIRELM----SVPVQL-RILALTATPG---- 268
GT + ++ DE H TGN+ Y + + + QL +IL LTA+ G
Sbjct: 122 DGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNA 181
Query: 269 -SKQQTIQHI---IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
+ ++TI+HI L I + E+ Q++ +++ +I++ V+ I+N
Sbjct: 182 KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR-----RIHNPFA 236
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLL--NSRDKFRQAPPPN----------LPQIK 372
+I S A+ +T+ VD L NS+ F + L Q++
Sbjct: 237 AIISNLMSETEAL-------MRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE 289
Query: 373 FGEVEAYF--GALITLYHIRR----LLSSHGIR--PAYEMLEE-----------KLKQGS 413
E E+ I H+R+ L+ S R A L E +L+Q
Sbjct: 290 DKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHL 349
Query: 414 FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRG 473
A+F K + L+ S ++PKL +++ +L D ++ +P+ +R ++F+ R
Sbjct: 350 TAKFQEKEPE------LIALSKDETNENPKLEELVCILDDAYRY-NPQ-TRTLLFAKTRA 401
Query: 474 SVRDIMNALAT--IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN-VIVATS 530
V + + I + +K +G+ + G + Q+ VL+ F+ N +++ATS
Sbjct: 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS 461
Query: 531 IGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
+ +EG+DI++ +LV+ ++ + + +MIQ GR GR
Sbjct: 462 VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR 495
>gi|402225633|gb|EJU05694.1| hypothetical protein DACRYDRAFT_113750 [Dacryopinax sp. DJM-731
SS1]
Length = 1596
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 129/515 (25%), Positives = 214/515 (41%), Gaps = 100/515 (19%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGK----IVFAAPSRPL 165
R YQ I A +N + + TG GKTLIA +I + R G+ +VF P PL
Sbjct: 16 RQYQTEIFTQAQQNNVIAVMDTGTGKTLIAITLIKWMTTRLRAPGEARKVVVFIVPKVPL 75
Query: 166 VMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR---------VFFVTPQVLEKD 216
V QQ EA I Q+ +++ G +WK ++ V +TP+VL
Sbjct: 76 VEQQREA------IAQQTSLEARGYYGALD-VDYWKREQWAKEFDEADVLVMTPRVLYDL 128
Query: 217 IQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV--PVQL-RILALTATP----GS 269
+ + + L+ DEAH N Y +R+ P + ++ +TA+P +
Sbjct: 129 LSHAHWSVDRISLLIFDEAHHCRKNNDYNQIMRDHYHKCDPARRPKVFGMTASPIWNVKN 188
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
+++ + N+ L R+ D+ +H + E+E+ ++ + W + P
Sbjct: 189 PADSLKELERNMNSRVLAVRDNIDE-----LHKHAPKPKEIEVIYDSTPTS---W-LAYP 239
Query: 330 YTSRLSAI---GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI-- 384
Y + ++ I L RD ++ +FR + + E Y A++
Sbjct: 240 YPTMINPIMNAERLVVRDSES----------KRFRTRYEATMESVGIIGAEYYLSAVVPR 289
Query: 385 -----------TLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVK-LLMQ 432
L +R+LLS P A+ + E++ +K LL+Q
Sbjct: 290 AIESLVLNKRRELSTLRKLLSVDDPAPG------------IAKINGQIEELEGIKALLVQ 337
Query: 433 QSISHGAQS---------PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRD---IMN 480
QS AQS P++ ++ E+L + T DP + IIF+ R V I+
Sbjct: 338 QSAHFFAQSLEVRPEWLAPRVIRLAEILQQCY-TADPA-CQCIIFAEQRQVVMVLSWILR 395
Query: 481 ALATIGDLVKATEFIGQSSGKASK---------GQSQKVQQAVLEKFRAGGYNVIVATSI 531
++ + +++ T FI G + G S K QQ + FR G N++VATS+
Sbjct: 396 HISYLRTMIRPT-FITGHGGSTHRSMRDLEDVQGMSVKEQQVAVRHFRDGKANLLVATSV 454
Query: 532 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
EEGLD +LVI FDA + + Q GR +K
Sbjct: 455 AEEGLDFQPCNLVIRFDALKTMVSYAQSRGRARQK 489
>gi|327303976|ref|XP_003236680.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892]
gi|326462022|gb|EGD87475.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892]
Length = 1460
Score = 92.4 bits (228), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 129/499 (25%), Positives = 214/499 (42%), Gaps = 65/499 (13%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ + + ++ N +VA+ TG GKT IA + I + R D + F AP PL QQ
Sbjct: 83 RGYQREMLEASIKQNIIVAMDTGSGKTQIAILRIRHELERCSNDKLVWFLAPKVPLAEQQ 142
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRAS------FWKTKRVFFVTPQVLEKDIQSGTCL 223
A +P T +TG + + ++ F R+ TPQ+L + +G
Sbjct: 143 YRAISE--QLPAYQTKILTGADNLERWSTQQIWDAFLLNTRIVVSTPQILLDVLSNGFIT 200
Query: 224 MKYLVCLVIDEAH---------RATGNYAYCTAIRELMSVPVQLRILALTATPGSK--QQ 272
++ + LV DEAH + N+ Y I +L IL LTA+P S+ +
Sbjct: 201 LRRIALLVFDEAHHCVKASPENKIMKNF-YHARIDQLSETNDLPSILGLTASPTSRLIED 259
Query: 273 TIQHIIDNL--YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+++ + NL + T E ++ YVH EL++V ++++ +N + Y
Sbjct: 260 SLRQLEQNLDAFCKTPAIHRE---EMMQYVHIP--ELLKVSYQKDSIIPHN----MKMKY 310
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQA---PPPNLPQIK--FGEVEAYFGALIT 385
L I + + +Q S ++F A P L Q+K F +V +G L
Sbjct: 311 LHMLDDIDIESDPFFQRYKGKTDRKSTERFLCALARKTPCLDQLKRCFTKVSHMYGEL-- 368
Query: 386 LYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNED--------IRKVKLLMQQSISH 437
SS I Y EK + + + D + V +M + +
Sbjct: 369 ----GHWASSTYISEIYRRTREKRAKLVDQNWSEWDRDDSSFMCNALEPVVAIMGERCWN 424
Query: 438 G---AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKAT 492
A SPK+ E LVD ++ SR IIF R + + + +A +L +K+
Sbjct: 425 STPDAVSPKV----EHLVDLLSSELTGASRGIIFVEQRATAVMLSHLIAHYPELAHIKSD 480
Query: 493 EFIGQSSGKASKGQSQKVQQA-----VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
F+G S+ K ++ + ++ ++G N++VATS+ EEG+D+ DLV+CF
Sbjct: 481 YFLGNSAFSDRKADITEISKPGDMKDSIDDLKSGKKNLLVATSVLEEGIDVSACDLVVCF 540
Query: 548 DANVSPLRMIQRMGRTGRK 566
D +QR GR +K
Sbjct: 541 DPPKQLRSFVQRRGRARKK 559
>gi|350289218|gb|EGZ70443.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 1547
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 126/490 (25%), Positives = 207/490 (42%), Gaps = 54/490 (11%)
Query: 105 PVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164
P + R YQ + + +L N +VA+ TG GKT +A + I D +I F P+
Sbjct: 71 PAALTARAYQLEMFEASLKQNIIVAMDTGSGKTQVAVLRIARELEQR-DKRIWFLTPTVA 129
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQ--ISPTKRASFWKTK----RVFFVTPQVLEKDIQ 218
L QQ + + IP I + GQ + + W R+ T Q+L
Sbjct: 130 LARQQHQVLQS--QIPSVKAIMLCGQDGVDSWSEQAVWDAVLLNVRIVVSTYQILFDANA 187
Query: 219 SGTCLMKYLVCLVIDEAHRATGNY--------AYCTAIRELMSVPVQLRILALTATPGSK 270
+ L +VIDEAH +G++ AY A + + VP IL LTA+P
Sbjct: 188 HSFVRLDSLSLIVIDEAHNCSGSHPIARLMTEAYLPAKKAGLPVP---SILGLTASPLKS 244
Query: 271 Q-----QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMG-QEAVEINNRIW 324
+ ++ ++D + + +R E H + E++ V G +
Sbjct: 245 NNLADIEKLEQVLDAVCRTPTIHREEL------LAHVNRPEMLVVSYGDSKGPGTEPTPT 298
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQ--APPPNLPQIKFGEVEAYFGA 382
+++ + + + ++ D L +R+K RQ L Q + V Y A
Sbjct: 299 DLMTRFLEAYHRLDISKDPDVLLLKAQRTERAREKLRQMVTKKDTLAQKELRGV--YNRA 356
Query: 383 LITLYHIRRLLSSHGI-RPAYEMLEEKLKQGSFARFMSKNEDIRKVKL--LMQQSISHGA 439
L+ I + + + R ML E + A+ E +R + + + ++ I
Sbjct: 357 LLVRREIGPWAADYYLTRTVSHMLAELERGEPPAQHRYIGEALRSIPIPAISKEPIQ--- 413
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT---IGDLVKATEFIG 496
SPK+ +L+VL H +DP I+F R V + + ++T D + IG
Sbjct: 414 LSPKVQTLLKVLASH--QQDPVG---IVFVKERVMVSIVTHIISTHPLTKDRYRTASMIG 468
Query: 497 QSS--GKASK--GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
+S GKA ++K LE FR G +N++VATS+ EEG+D+ +LVICFD +
Sbjct: 469 TASVPGKARNHMDMTKKEDMTSLEGFRRGRFNLLVATSVLEEGIDVPICNLVICFDEPSN 528
Query: 553 PLRMIQRMGR 562
IQR GR
Sbjct: 529 IKSFIQRRGR 538
>gi|226286856|gb|EEH42369.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 1450
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 116/508 (22%), Positives = 211/508 (41%), Gaps = 80/508 (15%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV-FAAPSRPLVMQQ 169
R YQ + + +L N ++A+ TG GKT IA + I + + K+V F P+ L QQ
Sbjct: 31 RAYQLEMLEASLKENIIIAMDTGSGKTQIAILRIRHELETCTEDKLVWFLTPTVALADQQ 90
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVF----------FVTPQVLEKDIQS 219
+ I Q+ ++ T + T + +W TK+++ TPQ+L +
Sbjct: 91 HK------NISQQLSVYQTRLLLGTDKVHYWSTKKIWDDVLLNIKIVVSTPQILLDALSH 144
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL--------RILALTATPGSKQ 271
G M + LV DEAH G T ++ +Q IL LTA+P ++
Sbjct: 145 GFITMSRISLLVFDEAHHCDGFSPANTIMQRFYHEQLQRTGTKTDLPHILGLTASPVTRA 204
Query: 272 --QTIQHIIDNLYISTLEYRNESDQDVSSYVHN--------RKIELIEVEMGQEAVEINN 321
++++ + NL + E +++ YVH R LI +M Q I
Sbjct: 205 DPESLKRVEKNLN-ARCETPRIHREELMRYVHRPELYTVKFRTDSLIHSDMLQNLSRIVG 263
Query: 322 RIWEVIRPYTSRL----------SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQI 371
+ P+ RL + L+ R LS + L RQA + +
Sbjct: 264 TVDIEKDPWIKRLRRQEDRRSQGKLLYALEKRKTHCLSQLSKL-----LRQAINVH-DDL 317
Query: 372 KFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLM 431
+A+ +I +R + H + + E+ +LL
Sbjct: 318 GPWAADAFISEVIERLETKRTMYQH---------------VELHSSLDREEEAFIFELLS 362
Query: 432 QQSIS-----HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALA--- 483
+ SIS ++S +S + +LV+ +++ IIF+ R +V + + ++
Sbjct: 363 ELSISPVKQDWDSESNIVSTKVNLLVELLESEHTADFTGIIFAQQRATVTMLSHLISRHP 422
Query: 484 TIGDLVKATEFIGQS-----SGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDI 538
+ D++ F+G + + ++ + Q+ ++ R+G N+++ATS+ EEG+D+
Sbjct: 423 RLKDIIVTGAFLGDACYASRTSTITEVHDTRSQKGSIDDLRSGKKNLLIATSVLEEGIDV 482
Query: 539 MEVDLVICFDANVSPLRMIQRMGRTGRK 566
LV+CFDA + IQR GR ++
Sbjct: 483 SACHLVVCFDAIKNLRSFIQRRGRARKE 510
>gi|296084589|emb|CBI25610.3| unnamed protein product [Vitis vinifera]
Length = 1623
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 134/494 (27%), Positives = 203/494 (41%), Gaps = 73/494 (14%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY---NFFRWFPDGKIVFAAPSRPLVM 167
R YQ + K AL N +V + TG GKT IA ++I+ + R VF AP+ LV
Sbjct: 48 RGYQLELCKKALEENIIVYMGTGCGKTHIAVLLIHALGHLIRKPQKNICVFLAPTVALVQ 107
Query: 168 QQIEACHNIVGIPQEWTIDM-----TGQISPTKRASFWKTK----RVFFVTPQVLEKDIQ 218
QQ E +ID G + W+ + VF +TPQ+L + +
Sbjct: 108 QQARVI--------EESIDFKVGTYCGNSRRLRTHHDWEKEFEQYEVFVMTPQILLRGLY 159
Query: 219 SGTCLMKYLVCLVIDEAHRA--TGNYAYCTAIRELMSVPVQL------RILALTATP--- 267
M+ + L+ DE H A N+ Y E+M V + RI +TA+P
Sbjct: 160 HCFIRMELIALLIFDECHHAQVQSNHPYA----EIMKVFYKTSSTRLPRIFGMTASPVVG 215
Query: 268 --GSKQQTIQHIIDNL--YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI 323
S Q + I++L + Y E+ Q++ +V + K I V + + +
Sbjct: 216 KGASDQANLPKCINSLENLLHAKVYSVENQQELERFVASPK---INVYCYHPDINMTSST 272
Query: 324 WEVIRPYTSRLSAIGLLQN-RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA 382
+ + S+ + L +N D+++ L S K Q NL I E +GA
Sbjct: 273 CKKLEEIKSQ-CVLSLRRNVEDHKS------LRSTKKLLQRMHDNL--IFSMENLGLWGA 323
Query: 383 LITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQS- 441
L R+L S E++E + S R K D + +L + I G S
Sbjct: 324 L----QASRILLSGDHAERNELMEAE-GSASDDRLCDKYLD-QSANVLASECIQDGIGSD 377
Query: 442 ---------PKLSKMLEVLVDHFKT-KDPKHSRVIIFSNFRGSVRDIMNALATIGDLV-- 489
P S+ L L+ T + + + IIF N + R + L + L
Sbjct: 378 ISYVDVLKEPFFSRKLLRLIGILSTFRRQPNMKCIIFVNRIVTARSLAYILQNLKFLSYW 437
Query: 490 KATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA 549
K +G SG K S+K +L+KFR+ N++VAT +GEEGLDI LVI FD
Sbjct: 438 KCDFLVGVHSGL--KSMSRKTMNIILDKFRSNELNLLVATKVGEEGLDIQTCCLVIRFDL 495
Query: 550 NVSPLRMIQRMGRT 563
+ IQ GR
Sbjct: 496 PETVASFIQSRGRA 509
>gi|359484756|ref|XP_002264486.2| PREDICTED: dicer-like protein 4 [Vitis vinifera]
Length = 1622
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 134/494 (27%), Positives = 203/494 (41%), Gaps = 73/494 (14%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY---NFFRWFPDGKIVFAAPSRPLVM 167
R YQ + K AL N +V + TG GKT IA ++I+ + R VF AP+ LV
Sbjct: 48 RGYQLELCKKALEENIIVYMGTGCGKTHIAVLLIHALGHLIRKPQKNICVFLAPTVALVQ 107
Query: 168 QQIEACHNIVGIPQEWTIDM-----TGQISPTKRASFWKTK----RVFFVTPQVLEKDIQ 218
QQ E +ID G + W+ + VF +TPQ+L + +
Sbjct: 108 QQARVI--------EESIDFKVGTYCGNSRRLRTHHDWEKEFEQYEVFVMTPQILLRGLY 159
Query: 219 SGTCLMKYLVCLVIDEAHRA--TGNYAYCTAIRELMSVPVQL------RILALTATP--- 267
M+ + L+ DE H A N+ Y E+M V + RI +TA+P
Sbjct: 160 HCFIRMELIALLIFDECHHAQVQSNHPYA----EIMKVFYKTSSTRLPRIFGMTASPVVG 215
Query: 268 --GSKQQTIQHIIDNL--YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI 323
S Q + I++L + Y E+ Q++ +V + K I V + + +
Sbjct: 216 KGASDQANLPKCINSLENLLHAKVYSVENQQELERFVASPK---INVYCYHPDINMTSST 272
Query: 324 WEVIRPYTSRLSAIGLLQN-RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA 382
+ + S+ + L +N D+++ L S K Q NL I E +GA
Sbjct: 273 CKKLEEIKSQ-CVLSLRRNVEDHKS------LRSTKKLLQRMHDNL--IFSMENLGLWGA 323
Query: 383 LITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQS- 441
L R+L S E++E + S R K D + +L + I G S
Sbjct: 324 L----QASRILLSGDHAERNELMEAE-GSASDDRLCDKYLD-QSANVLASECIQDGIGSD 377
Query: 442 ---------PKLSKMLEVLVDHFKT-KDPKHSRVIIFSNFRGSVRDIMNALATIGDLV-- 489
P S+ L L+ T + + + IIF N + R + L + L
Sbjct: 378 ISYVDVLKEPFFSRKLLRLIGILSTFRRQPNMKCIIFVNRIVTARSLAYILQNLKFLSYW 437
Query: 490 KATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA 549
K +G SG K S+K +L+KFR+ N++VAT +GEEGLDI LVI FD
Sbjct: 438 KCDFLVGVHSGL--KSMSRKTMNIILDKFRSNELNLLVATKVGEEGLDIQTCCLVIRFDL 495
Query: 550 NVSPLRMIQRMGRT 563
+ IQ GR
Sbjct: 496 PETVASFIQSRGRA 509
>gi|126465361|ref|YP_001040470.1| DEAD/DEAH box helicase [Staphylothermus marinus F1]
gi|126014184|gb|ABN69562.1| DEAD/DEAH box helicase domain protein [Staphylothermus marinus F1]
Length = 612
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/480 (22%), Positives = 191/480 (39%), Gaps = 91/480 (18%)
Query: 104 YPVNVPVRDYQFAITKTALFSN-TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162
+ + V RDYQ K AL + + V +PTG GKTLIA + KI+ P+
Sbjct: 4 FSLKVKPRDYQIEAAKWALSNKRSTVVMPTGSGKTLIAVLFSKELLEKKHAKKILVLEPT 63
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
R LV Q +GI + + G+ P KR W+ V TP+ D++
Sbjct: 64 RILVEQTARYFEKTLGIK---ALPIHGRYPPDKRIELWRKAVVAVATPETALNDVKQ--I 118
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282
+ ++++E H TG AY ++ V + R+ P S++ I+ Y
Sbjct: 119 IQNNYDAIIVNECHHTTGKDAYAKFMKTTDKV-FKWRLGLSAHIPRSRRYKIEK-----Y 172
Query: 283 ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN 342
I + + +D+ + YV E+ E E+ ++ R+ E Y + + L
Sbjct: 173 IGKIRVWSWTDERIKKYVPEWIGEIYEAELNDAEKQVLERLEEARLEYIGKYRGLVNLAI 232
Query: 343 RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAY 402
R + + L S +K + ++++ HI+ +L + +RP +
Sbjct: 233 RRFIRDGALALKESLEK-----------------DTLLASILS--HIKPMLENKEVRPLH 273
Query: 403 EMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462
++ + R +S +E K + + + I +++ LE + H+
Sbjct: 274 KL-------DALKRVLSDHEGFNKAIVFVDRVI--------VAEYLEKKLIHY------- 311
Query: 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG 522
N + +G T+ + VL++ +
Sbjct: 312 -----------------NPVIIVGKTKLRTDL-----------------REVLKRAHSSE 337
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR----TGRKHDGRIPHIFKPE 578
+I++TS GEEG+D+ + DL+I + SPLR IQR GR TGRK + +I P+
Sbjct: 338 TKIIISTSAGEEGIDLPQADLLIIWSNVASPLRFIQRHGRILRLTGRKGLKFVAYIVTPD 397
>gi|225684610|gb|EEH22894.1| dicer [Paracoccidioides brasiliensis Pb03]
Length = 1415
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 116/508 (22%), Positives = 211/508 (41%), Gaps = 80/508 (15%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV-FAAPSRPLVMQQ 169
R YQ + + +L N ++A+ TG GKT IA + I + + K+V F P+ L QQ
Sbjct: 31 RAYQLEMLEASLKENIIIAMDTGSGKTQIAILRIRHELETCTEDKLVWFLTPTVALADQQ 90
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVF----------FVTPQVLEKDIQS 219
+ I Q+ ++ T + T + +W TK+++ TPQ+L +
Sbjct: 91 HK------NISQQLSVYQTRLLLGTDKVHYWSTKKIWDDVLLNIKIVVSTPQILLDALSH 144
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL--------RILALTATPGSKQ 271
G M + LV DEAH G T ++ +Q IL LTA+P ++
Sbjct: 145 GFITMSRISLLVFDEAHHCDGFSPANTIMQRFYHEQLQRTGTKTDLPHILGLTASPVTRA 204
Query: 272 --QTIQHIIDNLYISTLEYRNESDQDVSSYVHN--------RKIELIEVEMGQEAVEINN 321
++++ + NL + E +++ YVH R LI +M Q I
Sbjct: 205 DPESLKRVEKNLN-ARCETPRIHREELMRYVHRPELYTVKFRTDSLIHSDMLQNLSRIVG 263
Query: 322 RIWEVIRPYTSRL----------SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQI 371
+ P+ RL + L+ R LS + L RQA + +
Sbjct: 264 TVDIEKDPWIKRLRRQEDRRSQEKLLYALEKRKTHCLSQLSKL-----LRQAINVH-DDL 317
Query: 372 KFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLM 431
+A+ +I +R + H + + E+ +LL
Sbjct: 318 GPWAADAFISEVIERLETKRTMYQH---------------VELHSSLDREEEAFIFELLS 362
Query: 432 QQSIS-----HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT-- 484
+ SIS ++S +S + +LV+ +++ IIF+ R +V + + ++
Sbjct: 363 ELSISPVKQDWDSKSNIVSTKVNLLVELLESEHTADFTGIIFAQQRATVTMLSHLISKHP 422
Query: 485 -IGDLVKATEFIGQS-----SGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDI 538
+ D++ F+G + + ++ + Q+ ++ R+G N+++ATS+ EEG+D+
Sbjct: 423 RLKDIIVTGAFLGDACYASRTSTITEVHDTRSQKGSIDDLRSGKKNLLIATSVLEEGIDV 482
Query: 539 MEVDLVICFDANVSPLRMIQRMGRTGRK 566
LV+CFDA + IQR GR ++
Sbjct: 483 SACHLVVCFDAIKNLRSFIQRRGRARKE 510
>gi|315051166|ref|XP_003174957.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893]
gi|311340272|gb|EFQ99474.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893]
Length = 1425
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 131/513 (25%), Positives = 215/513 (41%), Gaps = 74/513 (14%)
Query: 95 DAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPD 153
D EAA P V R YQ + K +L N +VA+ TG GKT IA + I + R D
Sbjct: 36 DQEAA-----PAMVKSRTYQIEMLKESLKQNIIVAMDTGSGKTQIAILRIRHELERCSND 90
Query: 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRAS------FWKTKRVFF 207
+ F AP PL QQ A + +P T +TG + + ++ F R+
Sbjct: 91 KLVWFLAPKVPLAEQQYRAISS--QLPAFQTKILTGADNLERWSTQKIWDAFLLNTRIVV 148
Query: 208 VTPQVLEKDIQSGTCLMKYLVCLVIDEAH---------RATGNYAYCTA--IRELMSVPV 256
TPQVL + +G ++ + L+ DEAH R N+ + + E +P
Sbjct: 149 STPQVLLDALSNGFITLQRIALLIFDEAHHCVKSSPENRIMQNFYHARKDQLSETNDLPY 208
Query: 257 QLRILALTATPGSK--QQTIQHIIDNLYISTLEYRNESDQDVSSYVHN---RKI-----E 306
IL LTA+P S + ++ + NL+ + + +D+ +VH RK+
Sbjct: 209 ---ILGLTASPTSSLIENALRQLEQNLH-ACCKTPTIHREDMMQFVHIPELRKVSYQNDS 264
Query: 307 LIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP 366
+I + M + + + N I P+ R D ++L L+ +R P
Sbjct: 265 IIPLNMELKFLSMLNDIDTKYDPFFQRYQG-----KTDRKSLERFSLVAARKT------P 313
Query: 367 NLPQIK--FGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNED- 423
Q+K + FG L + SS I Y EK + + + D
Sbjct: 314 CFVQLKRCCRRISHMFGEL------GQWASSTYISEVYRRAREKETKLLDQNWSEWDRDD 367
Query: 424 -------IRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVR 476
++ V +M + A +S+ +E LV ++ SR IIF R +
Sbjct: 368 TSFICNALKPVVEIMGER-CWNAPPDVISEKVEHLVHILSSELTGASRGIIFVEQRATAV 426
Query: 477 DIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQA-----VLEKFRAGGYNVIVAT 529
+ + ++ L V + F+G S+ A K ++ +A ++ R+G N+++AT
Sbjct: 427 MLTHLISHHPRLTHVNSDYFLGNSAFAARKSDITELSKAGDMKDSIDDLRSGKKNLLIAT 486
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
S+ EEG+D+ DLV+CFD +QR GR
Sbjct: 487 SVLEEGIDVSACDLVVCFDPPKQLRSFVQRRGR 519
>gi|355683392|gb|AER97092.1| DEAD box polypeptide 58 [Mustela putorius furo]
Length = 928
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 121/505 (23%), Positives = 225/505 (44%), Gaps = 61/505 (12%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPD---GKIVFAAPSRPLV 166
R+YQ +T A NTL+ PTG GKTL++ ++ + + FP GK+VF A PL
Sbjct: 243 RNYQLELTLPAKEGKNTLICAPTGCGKTLVSLLICEHHLKKFPQERKGKVVFFAIQLPLY 302
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRA-SFWKTKRVFFVTPQVLEKDIQSGTC-LM 224
QQ + ++G + T + + +TPQ+L +++GT +
Sbjct: 303 EQQKSIFSDYFEKLGYKVAGISGVTAETVSVEQIVENNDIIILTPQILVNSLRNGTLPSL 362
Query: 225 KYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATPGS-----KQQ 272
++ DE H N+ Y + + S P+ +++ LTA+ G+ ++
Sbjct: 363 SVFTLMIFDECHNTGKNHPYNMIMFNYIDQKLGGSSDPLP-QVIGLTASVGTGDAKNTKE 421
Query: 273 TIQHI------IDNLYISTLEYRNESDQDVSSYVHN--RKIE--------LIEVEMGQEA 316
+++I +D I+T++ E ++V+ RK+E I ++ +E
Sbjct: 422 AMEYICKLCASLDTAVIATVKDNLEELEEVAYKPQKFFRKVESRTTDRFKCIISQLMRET 481
Query: 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEV 376
+ I++ + T L + +QNR + T + S K + Q+ +
Sbjct: 482 ESLAKSIFDELGTVT--LENVSQIQNRSFGTQKYEQWIVSVQK-----ACMVVQLPDKDE 534
Query: 377 EAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLEEKLKQGSFARFMSKNEDI---- 424
E+ + LY H+R+ +++ H ++ A + L++ A F +D+
Sbjct: 535 ESRICKALYLYTSHLRKYNDALMINEHARMKDALDYLKDFFADVRSAGFDETEQDLTRRF 594
Query: 425 -RKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALA 483
K+K L S+ ++PKL + +L + + +P+ SR I+F R V + +
Sbjct: 595 EEKLKELESVSMDLSNENPKLKDLSFILQEEYHL-NPE-SRTILFVKTRALVDALKKWIE 652
Query: 484 TIGDLVKATEFIGQSSGKASK--GQSQKVQQAVLEKFRAGG-YNVIVATSIGEEGLDIME 540
+L I GK ++ G + Q+ L+ FR G +++ATS+ +EG+DI E
Sbjct: 653 ENSELSFLNPGILTGRGKTNQNTGMTLPAQKCALDAFRTDGDKKILIATSVADEGIDIAE 712
Query: 541 VDLVICFDANVSPLRMIQRMGRTGR 565
+LVI ++ + +RMIQ GR GR
Sbjct: 713 CNLVILYEYVGNVIRMIQTRGR-GR 736
>gi|356533095|ref|XP_003535104.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max]
Length = 1414
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 126/488 (25%), Positives = 202/488 (41%), Gaps = 61/488 (12%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKI-VFAAPSRPLVM 167
R YQ A+ NT+V L TG GKTLIA +++ ++ P +I VF P LV
Sbjct: 29 RSYQLEALDNAIRENTIVYLETGSGKTLIAVMLLRSYAHHLRKPSPQIAVFLVPKVVLVS 88
Query: 168 QQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQSGT 221
QQ EA H + + W DM A+ WK + VF +TP +L ++
Sbjct: 89 QQAEAVKKHTDLKVGLYWG-DMGIDFWD---AATWKQEVQKYEVFVMTPAILLNCLRHSF 144
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNL 281
+ + L++DE H A G + Y + + E + I L G I+ + N
Sbjct: 145 LKLNLIKVLIMDECHHARGKHPYASIMTEFYHHQLNSGISDLPRIFGMTASPIKSKVGNC 204
Query: 282 YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341
+S +E+ + + + +H++ + EAV + E I T + Q
Sbjct: 205 ELSW----SENIRKLMTLMHSKVYTCV-----SEAV-----LTEFIPTSTPKFK---FYQ 247
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEA---------YFGALITLYHIRRL 392
+ Q++ DL ++ NL F + A F ALI + + L
Sbjct: 248 GNEVQSVLFEDLAFKLKMLKEQHESNLKSSDFTKSAAEFARRRTKKIFSALI--FCLDEL 305
Query: 393 LSSHGIRPAYEMLEEKLKQGSFAR--------FMSKNEDIRKVKL------LMQQSISHG 438
++ A + ++ S+ F+S K L + +I +
Sbjct: 306 GVWLALKAAESLSSNDIQLFSWGHSGDTVVKNFISAGVQTLKTYLPCGPQWSIGDNIKYD 365
Query: 439 AQSPKLSKMLEVLVDH-FKTKDPKHSRVIIFSNFRGS---VRDIMNALATIGDLVKATEF 494
+ LS + L+D + + R IIF + +RD++N L + K
Sbjct: 366 VEMELLSSKVCCLIDSILEYRGLTDMRCIIFVERVITAVVLRDLLNTLLPKYNSWKTKFI 425
Query: 495 IGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
GQ+ G + QS+K Q ++E+FR G N+IVATSI EEGLD+ +LVI FD +
Sbjct: 426 AGQNFG--LQNQSRKKQNEIVEEFRMGLVNIIVATSILEEGLDVESCNLVIRFDPCHTVC 483
Query: 555 RMIQRMGR 562
IQ GR
Sbjct: 484 SFIQSRGR 491
>gi|239610437|gb|EEQ87424.1| dicer-like protein 2 [Ajellomyces dermatitidis ER-3]
Length = 1509
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 124/529 (23%), Positives = 220/529 (41%), Gaps = 86/529 (16%)
Query: 105 PVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAV----VIYNFFRWFPDGKIVFAA 160
PV P R YQ + + +L N ++A+ TG GKT + + +F D I++
Sbjct: 43 PVFKP-RAYQLEMLEASLRENIIIAMDTGSGKTQVVPTHELEIDAQVLNYFSDLTILWIF 101
Query: 161 PSRPLVMQQIEAC--HNIV---------------GIPQEWTIDMTGQISPTKRASFWKTK 203
+ + ++E C H +V I Q+ + T + + ++W TK
Sbjct: 102 RAILRIRHELETCAAHKLVWFLAPTVALADQQHKSISQQLSAYQTRLLLGSDNVNYWSTK 161
Query: 204 ----------RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS 253
R+ TPQVL + G M + LV DEAH N A ++
Sbjct: 162 NIWDDILLNIRIVVSTPQVLLDAMTHGFVTMSRIALLVFDEAHHCAENEAPNILMQRFYH 221
Query: 254 VPVQL--------RILALTATPGSKQQTIQHIIDNLYISTLEYRNESD--------QDVS 297
+Q IL LTA+P +K +D Y+ +E+ S +++
Sbjct: 222 EQLQRTGTANDLPHILGLTASPITK-------VDPKYLMKIEHNLNSRCETPRIHREELM 274
Query: 298 SYVHNRKIELI----EVEMGQEAVEINNRIWEVIR----PYTSRLSAIGLLQNRDYQTLS 349
YVH ++ + +V +G + ++ +RI E + P+ RL Q +D + S
Sbjct: 275 RYVHRPELCTVNFQVDVSVGSDILQSLHRIVETVDIEQDPWIKRLK-----QQKDRR--S 327
Query: 350 PVDLLNSRDKFRQAPPPNLPQIK--FGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEE 407
LLN+ K + + +++ + GA I +L G + A + +
Sbjct: 328 QNTLLNAMVKRKTFAISQMTKLRRQATNIHENLGAWAADAFISEVLKRLGAKRAKQSADH 387
Query: 408 KLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKL-SKMLEVLVDHFKTKDPKHSRVI 466
G+ R +L + S + P L S +L+D + + I
Sbjct: 388 ---LGTLEREQENFVFETLSQLPIYPSKQYWDSEPDLVSSKANLLIDLLEKEHTSDFTGI 444
Query: 467 IFSNFRGSVRDIMNALAT---IGDLVKATEFIGQS-----SGKASKGQSQKVQQAVLEKF 518
IF+ R +V + + ++ + DL+ F+G + + ++ + K Q+ ++
Sbjct: 445 IFAQQRSTVTMLAHLISKHPRLKDLIVPGAFLGDAGYADRTSTITELHNTKTQRGSIDDL 504
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR-MIQRMGRTGRK 566
R+G N++VATS+ EEG+D+ LV+CFDA +S LR IQR GR ++
Sbjct: 505 RSGKKNLLVATSVLEEGIDVSACHLVVCFDA-ISNLRSFIQRRGRARKE 552
>gi|261195592|ref|XP_002624200.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081]
gi|239588072|gb|EEQ70715.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081]
Length = 1509
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 124/529 (23%), Positives = 220/529 (41%), Gaps = 86/529 (16%)
Query: 105 PVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAV----VIYNFFRWFPDGKIVFAA 160
PV P R YQ + + +L N ++A+ TG GKT + + +F D I++
Sbjct: 43 PVFKP-RAYQLEMLEASLRENIIIAMDTGSGKTQVVPTHELEIDAQVLNYFSDLTILWIF 101
Query: 161 PSRPLVMQQIEAC--HNIV---------------GIPQEWTIDMTGQISPTKRASFWKTK 203
+ + ++E C H +V I Q+ + T + + ++W TK
Sbjct: 102 RAILRIRHELETCAAHKLVWFLAPTVALADQQHKSISQQLSAYQTRLLLGSDNVNYWSTK 161
Query: 204 ----------RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS 253
R+ TPQVL + G M + LV DEAH N A ++
Sbjct: 162 NIWDDILLNIRIVVSTPQVLLDAMTHGFVTMSRIALLVFDEAHHCAENEAPNILMQRFYH 221
Query: 254 VPVQL--------RILALTATPGSKQQTIQHIIDNLYISTLEYRNESD--------QDVS 297
+Q IL LTA+P +K +D Y+ +E+ S +++
Sbjct: 222 EQLQRTGTANDLPHILGLTASPITK-------VDPKYLMKIEHNLNSRCETPRIHREELM 274
Query: 298 SYVHNRKIELI----EVEMGQEAVEINNRIWEVIR----PYTSRLSAIGLLQNRDYQTLS 349
YVH ++ + +V +G + ++ +RI E + P+ RL Q +D + S
Sbjct: 275 RYVHRPELCTVNFQVDVSVGSDILQSLHRIVETVDIEQDPWIKRLK-----QQKDRR--S 327
Query: 350 PVDLLNSRDKFRQAPPPNLPQIK--FGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEE 407
LLN+ K + + +++ + GA I +L G + A + +
Sbjct: 328 QNTLLNAMVKRKTFAISQMTKLRRQATNIHENLGAWAADAFISEVLKRLGAKRAKQSADH 387
Query: 408 KLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKL-SKMLEVLVDHFKTKDPKHSRVI 466
G+ R +L + S + P L S +L+D + + I
Sbjct: 388 ---LGTLEREQENFVFETLSQLPIYPSKQYWDSEPDLVSSKANLLIDLLEKEHTSDFTGI 444
Query: 467 IFSNFRGSVRDIMNALAT---IGDLVKATEFIGQS-----SGKASKGQSQKVQQAVLEKF 518
IF+ R +V + + ++ + DL+ F+G + + ++ + K Q+ ++
Sbjct: 445 IFAQQRSTVTMLAHLISKHPRLKDLIVPGAFLGDAGYADRTSTITELHNTKTQRGSIDDL 504
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR-MIQRMGRTGRK 566
R+G N++VATS+ EEG+D+ LV+CFDA +S LR IQR GR ++
Sbjct: 505 RSGKKNLLVATSVLEEGIDVSACHLVVCFDA-ISNLRSFIQRRGRARKE 552
>gi|408393408|gb|EKJ72672.1| hypothetical protein FPSE_07072 [Fusarium pseudograminearum CS3096]
Length = 1510
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 124/503 (24%), Positives = 216/503 (42%), Gaps = 77/503 (15%)
Query: 107 NVPVRDYQFAITKTALFSNTLVALPTGL-----------------GKTLIAAVVIYNFFR 149
++ R+YQ + + A N +V LPTG+ GKTLI+ +++ ++ R
Sbjct: 68 DITPREYQIELFEAAKEKNLIVVLPTGIFLSLYASTLDILIGTGSGKTLISILLLKHYIR 127
Query: 150 WFPDGKIVFAAPSRP--LVMQQIEACHNIVGIPQEW-----TIDMTG-QISPTKRASFW- 200
+ + P + +++++ C ++ T+ TG TK +W
Sbjct: 128 IEVESR-ALGNPRKVAFFLVEKVALCEQQYRFLKDQIFGHKTVMFTGDNRGVTKDKKYWD 186
Query: 201 ---KTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP-- 255
+ +V T +L + +G M + L+ DEAH A + Y IR
Sbjct: 187 DQFASNKVVVCTAHILLDCLNNGFITMDQINLLIFDEAHHAKKKHDYAQIIRRYYYSTDK 246
Query: 256 -VQLRILALTATP-GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMG 313
+ RIL +TA+P SK + + LE D ++++ + +M
Sbjct: 247 NKRPRILGMTASPVDSKAGDVAEL-------ALELEKTLDSEIAT---------LSDKMM 290
Query: 314 QEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK- 372
++A + + E T + S +G+ Q + L SR+K +A +
Sbjct: 291 RQATDFQVHVEE-----TVKYSTLGIPDETKTQLWDSISKLVSRNKEFKASLDFTKEAST 345
Query: 373 -FGE--VEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKL 429
G + Y+ LI I+RL + R A+ EKL AR E +R+V+
Sbjct: 346 ILGPWCADRYWQVLIDDTEIKRL--ADRTRMAFFGGGEKL----LARGDQAEEAVREVQK 399
Query: 430 LMQQ----SISHGAQ--SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS---VRDIMN 480
++ +IS +Q S K+ + E+LV F + K R I+F + R + + D+ +
Sbjct: 400 VVAAHEFGTISPQSQELSAKVKCLHEILVHAFTIDNTK--RCIVFVDQRHTACLLSDLYS 457
Query: 481 ALATIGDLVKATEFIGQSSGKASKGQ-SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIM 539
++ + A+ IGQ S ++ G S + Q + L+ FR G N + ATS+ EEG+DI
Sbjct: 458 QVSMAIPGMNASYMIGQQSSSSALGNMSLRKQCSTLKNFRDGMINCLFATSVAEEGIDIP 517
Query: 540 EVDLVICFDANVSPLRMIQRMGR 562
DLVI FD S ++ +Q GR
Sbjct: 518 SCDLVIRFDLYTSVIQYVQSKGR 540
>gi|148231712|ref|NP_001085915.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Xenopus laevis]
gi|49256146|gb|AAH73528.1| MGC82787 protein [Xenopus laevis]
Length = 682
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 118/495 (23%), Positives = 207/495 (41%), Gaps = 61/495 (12%)
Query: 108 VPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLV 166
+ + DYQ+ + AL N ++ LPTG GKT A V + K+ LV
Sbjct: 1 MELHDYQWEVIGPALEGKNIIIWLPTGAGKTRAALYVAMRHLEMKRNAKVCLMVNKVHLV 60
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW----KTKRVFFVTPQVLEKDIQSGT- 221
Q + + + ++G T+ F+ + V T Q+L+ + S +
Sbjct: 61 DQHFSNEFHPHLKDKYKVVAISGD---TEHKCFFAELVQNNDVIICTAQILQNALSSSSE 117
Query: 222 ---CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR-----ILALTATPGSKQQT 273
+ L+IDE H + Y + + + + IL LTA+PG+ + T
Sbjct: 118 EIHVELTDFTLLIIDECHHTHKDGVYNKLMEGYLERKITQKGKLPQILGLTASPGTGRAT 177
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEIN----NRIWEVI-- 327
+ E E + + + +I + E+ +E +E N+ ++++
Sbjct: 178 -----------SFEKAEEHILQICANLDTWRI--MSAEVHREDLEAKAKQPNKQYDLVTE 224
Query: 328 RPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQI-KFGEVEAYFGALITL 386
RP + L ++ L D S D Q + ++ K G VEA
Sbjct: 225 RPRDPFGDKLKELMKTIHEYLRTTDFCES-DFGTQLYEQKVVELEKEGAVEANRMKRTCA 283
Query: 387 YHIRR----LLSSHGIR--PAYEMLEEKLKQGSFAR--------FMSKNEDIRKVKLL-M 431
H+R+ LL +R AYE+L++ +Q R F+ + D + +LL +
Sbjct: 284 LHLRKYNDSLLVHDTVRMMDAYELLDDYYQQEKVIRKQNDPTDAFLIQLFDGNRARLLEL 343
Query: 432 QQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--- 488
Q + ++PKL K+ E+L D F+ SR IIF+ R S + N +++
Sbjct: 344 AQDVRF--ENPKLRKLEEILRDQFQFSSG--SRGIIFTRTRQSTHSLHNWISSKHSFQIM 399
Query: 489 -VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
VK G SK +Q Q+ +E FR G N++++TS+ EEGLDI + ++V+ +
Sbjct: 400 GVKTAPLTGAGYSNQSKHMTQNEQRETIEMFRKGQLNLLISTSVAEEGLDIPQCNIVVRY 459
Query: 548 DANVSPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 460 GLMTNEISMVQARGR 474
>gi|356546104|ref|XP_003541471.1| PREDICTED: dicer-like protein 4-like [Glycine max]
Length = 1636
Score = 90.5 bits (223), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 124/486 (25%), Positives = 214/486 (44%), Gaps = 58/486 (11%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY---NFFRWFPDGKIVFAAPSRPLVM 167
R YQ + K A+ N +V L TG GKT IA ++++ + R VF AP+ LV
Sbjct: 50 RRYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGDLIRKPQKNICVFLAPTVALVH 109
Query: 168 QQIEACHNIVGIPQEWTID-MTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQSGTC 222
QQ + ++ ++ + G K W+ + V +TPQ+L ++
Sbjct: 110 QQAK----VIADSTDFKVGTYCGSSKRLKHHQDWEQEMGQYEVLVMTPQILHHNLSHCFI 165
Query: 223 LMKYLVCLVIDEAHRA--TGNYAYCTAIRELMS-----VPVQLRILALTATP-----GSK 270
M+ + L+ DE H A N+AY ++ VP RI +TA+P S
Sbjct: 166 TMEMIALLIFDECHHAQVKSNHAYAVIMKVFYKSNSTKVP---RIFGMTASPVVGKGASS 222
Query: 271 QQTIQHIIDNL-YISTLEYRNESDQDVSSYVHNRKIELIE-VEMGQEAVEINNRIWEVIR 328
+ + I++L +I + + D+++ S+V I + V ++ +I E+ R
Sbjct: 223 EANLAKSINSLEHILDAKVYSVEDKELQSFVTTPVINIYHYVSTASGETSLHLKIEEIKR 282
Query: 329 PYTSRLSAIGLLQNRDYQT-LSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY 387
+ L D+Q ++ LLN NL +G ++A L++
Sbjct: 283 QCIATLGR----SIEDHQKRMNTKKLLNRMHDNVIFGLQNLG--IWGALQASH-ILLSGD 335
Query: 388 HIRR--LLSSHGIRPAYEMLEEKLKQGSFARFMSK------NEDIRKVKLLMQQSISHGA 439
H R L+ + G + ++ L Q + F S+ D+ V++L + S
Sbjct: 336 HSERHELVEADGNSSDDSLCDKYLAQAA-ELFTSQCMIGILTFDLSSVEILKEPFFS--- 391
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQ 497
KL +++ +L +F+ + K+ + IIF N + R + L + L ++ +G
Sbjct: 392 --AKLLRLIGIL-SNFRLQ--KNMKCIIFVNRIVTARSLSYILQKLKLLRQWRSDFLVGV 446
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
+G K S+K +++KFR+G N++VAT +GEEGLDI LVI FD + I
Sbjct: 447 HAGL--KSMSRKTMNIIVDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFI 504
Query: 558 QRMGRT 563
Q GR
Sbjct: 505 QSRGRA 510
>gi|302661784|ref|XP_003022555.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517]
gi|291186507|gb|EFE41937.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517]
Length = 1468
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 127/504 (25%), Positives = 214/504 (42%), Gaps = 63/504 (12%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ + + ++ N +VA+ TG GKT IA + I + R D + F AP PL QQ
Sbjct: 58 RGYQREMLEASIKQNIIVAMDTGSGKTQIAILRIRHELERCSNDKLVWFLAPRVPLAEQQ 117
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRAS------FWKTKRVFFVTPQVLEKDIQSGTCL 223
A +P T +TG + + ++ F R+ TPQ+L + +G
Sbjct: 118 YRAISE--QLPAYQTKILTGADNLERWSTQQIWDAFLLNTRIVVSTPQILLDVLSNGFIT 175
Query: 224 MKYLVCLVIDEAHRATG---------NYAYCTAIRELMSVPVQLRILALTATPGSKQQTI 274
++ + LV DEAH N+ Y I +L IL LTA+P SK
Sbjct: 176 LRRIALLVFDEAHHCVKASPENKIMRNF-YHARIDQLSETNDLPSILGLTASPTSKL--- 231
Query: 275 QHIIDNLY----ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE--VIR 328
I D+L S L + +Q++ ++ I E+ E+ ++ I
Sbjct: 232 --IEDSLSRQCECSLLMESRQLEQNLDAFCKTPAIHREEMMQYVHIPELRKISYQKDSII 289
Query: 329 PYTSRLSAIGLLQNRD------YQTLSPVDLLNSRDKFRQA---PPPNLPQIK--FGEVE 377
P+ ++ + +L + D +Q S ++F +A P L Q+K F +V
Sbjct: 290 PHNMKVKFLHMLDDIDIESDPFFQRYKGKTDSKSTERFLRALARKTPGLDQLKRCFTKVS 349
Query: 378 AYFGALITLYHIRRLLSSHGIRPAYEMLEE---KLKQGSFARFMSKNED-----IRKVKL 429
+G L SS I Y E KL S++ + + + V
Sbjct: 350 HMYGEL------GHWASSAFISEIYRRTREERAKLVDHSWSEWDRDDSSFMCNALEPVVA 403
Query: 430 LMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL- 488
+M + + +S+ +E LVD ++ SR IIF R + + + ++ +L
Sbjct: 404 IMGERCWNSTPDA-VSQKVEHLVDLLSSELTGSSRGIIFVEQRATAVMLSHLISRYPELA 462
Query: 489 -VKATEFIGQSSGKASKGQSQKVQQA-----VLEKFRAGGYNVIVATSIGEEGLDIMEVD 542
+K+ F+G S+ A K ++ + ++ ++G N++VATS+ EEG+D+ D
Sbjct: 463 HIKSDYFLGNSAFSARKADLTELSKPGDMKNSIDDLKSGKKNLLVATSVLEEGIDVSACD 522
Query: 543 LVICFDANVSPLRMIQRMGRTGRK 566
LV+CFD +QR GR +K
Sbjct: 523 LVVCFDPPKQLRSFVQRRGRARKK 546
>gi|326922819|ref|XP_003207642.1| PREDICTED: interferon-induced helicase C domain-containing protein
1-like [Meleagris gallopavo]
Length = 1001
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 155/664 (23%), Positives = 269/664 (40%), Gaps = 113/664 (17%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPSRP 164
+RDYQ + K AL N ++ LPTG GKT +A + + + GK++ P
Sbjct: 301 LRDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKKKASEPGKVIVLVNKVP 360
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASF---WKTKRVFFVTPQVLEKDIQSGT 221
LV Q + N I ++G + SF K V T Q+LE + + T
Sbjct: 361 LVEQHLRKEFNPFLKRWYQVIGLSG--DSELKISFPEVVKRNDVIICTAQILENSLLNAT 418
Query: 222 -----CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQH 276
+ ++IDE H Y +R + ++ R A P Q I
Sbjct: 419 EEDEGVHLSDFSLMIIDECHHTQKEGVYNNIMRRYLKDKIKNRKQAKENKPLIPQPQILG 478
Query: 277 IIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIR-------- 328
+ + + + R ++++ + N I + + + A ++ N++ + +
Sbjct: 479 LTASPGVGGAKSRPKAEEHILKICANLDACRI-MTVTEHASQLKNQVKDPFKKTVIADDK 537
Query: 329 ---PYTSRLSAIGLLQN-RDYQTLSPVDLLNS--------RDKFRQAPPPNLPQIKFGE- 375
P+ R+ I ++Q+ + Y L P S R++ R A + E
Sbjct: 538 RRDPFRERI--IEIMQDIQKYCQLYPKSEFGSQPYEQWVIREERRAAKEEKRKERVCAEH 595
Query: 376 VEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGS---FARFMSKNEDIRKVKLLM- 431
++ Y AL IR + + + + Y+ L+ K GS +SK ++ + + +
Sbjct: 596 LKKYNDALQINDTIRMVDAYNHLNNFYKELKRKKTAGSDDDEEPLVSKKDETDEFLMGLF 655
Query: 432 ---QQSISHGAQSP-----KLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNAL 482
++ + A+ P KL K+ L++ F KT++ SR IIF+ R S + + +
Sbjct: 656 HEKKKQLKELARKPEYDNEKLMKLRNTLMEEFTKTEE---SRGIIFTKTRQSALALYHWI 712
Query: 483 A------TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGL 536
+G +KA IG +K +Q Q+ V++KFR G N+++AT++ EEGL
Sbjct: 713 MDNPKFEEVG--IKAHYLIGAGHNSETKPMTQNEQREVIDKFRGGSINLLIATTVAEEGL 770
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGR----------TGRKHDGRIP----HIFKPEVQF- 581
DI E ++VI + + + M+Q GR G + +IF+ + +
Sbjct: 771 DIKECNIVIRYGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFRENMMYK 830
Query: 582 -----VELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPTSDSTWRPSLI 636
E+ E+Y++ K++D EK A+ D Y PSLI
Sbjct: 831 AIQRVQEMPPEEYLN---KIQD---FQLQSIVEKRMKAKRDQRKTY-------KKNPSLI 877
Query: 637 AFPHFQALPSRVHKVMHSFRTGMLIDMMQHL------QGLTFSRDDRTFVEDEVSSDKHL 690
F L HKV+ S +I+ M H+ Q L R++RT DKH
Sbjct: 878 TF-----LCKNCHKVICSGEDIRVIENMHHVSVKKDFQHLYHIRENRTL------QDKHA 926
Query: 691 GLQT 694
QT
Sbjct: 927 DYQT 930
>gi|443728415|gb|ELU14771.1| hypothetical protein CAPTEDRAFT_209996 [Capitella teleta]
Length = 985
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 119/509 (23%), Positives = 213/509 (41%), Gaps = 63/509 (12%)
Query: 108 VPVRDYQFAITK-TALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLV 166
+ +R YQ + N+L+ PTG GKT +AA +I P+ K++F P+ LV
Sbjct: 290 IRLRSYQLELVNGVGDVKNSLIVAPTGCGKTFVAAEIIKQHMVKNPNSKVIFLVPTVALV 349
Query: 167 MQQIEACHNIV---GIPQEWTIDMTG---QISPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
QQ H+++ IP ++G QI+P K + + + +TPQ+L
Sbjct: 350 QQQ----HDVLQSYSIPDARIKPISGEGSQINPLK--NLIQRHNIMVMTPQILVNACDHA 403
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAI---RELMSVPVQL--RILALTATPG-----SK 270
+ L + L+ DE H + + Y + +L + ++ RI+ +TA+ G ++
Sbjct: 404 SLLSFGIGLLIFDECHHSMKEHPYSKIMALYHDLKPLEGKMPPRIVGMTASVGVGKAKNE 463
Query: 271 QQTIQHII------DNLYISTLEYRNE------SDQDVSSYVHNRKIELIEVEMGQEAVE 318
I+HII D +S ++ + + Q+ Y+ R + V + + V
Sbjct: 464 DDAIKHIIRLLANMDAHLVSVVDCKEDLAFCVNKPQENLVYLKKRNSDPFYVCIHEIMVT 523
Query: 319 INNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVD---LLNSR--DKFRQAPPPNLPQIKF 373
I NRI + T + +G + Q P + LL + F + N+ F
Sbjct: 524 IENRIENYNKDLTKAQARLG----KQEQIKPPAEKGSLLYKQWHSAFAKRLIVNVENESF 579
Query: 374 GEVEAYFGALITLYHIRRLLSSHGIR-PAYEMLEEKLKQGSFARFMSKNED--------- 423
+ +Y+ L++S A E L+EK+K R ++++D
Sbjct: 580 HFDLVCCAEYLKIYNDALLINSDCRSLDALEYLKEKVKHLLEMRNRNRDQDSDRIHIKQW 639
Query: 424 -----IRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDI 478
KV+ L + +PKL + + ++ + ++P R ++F R +
Sbjct: 640 LAKLYTDKVEDLERFCDDPNNANPKLETLKKYILKKKREEEP--MRCMVFCQTREICSSL 697
Query: 479 MNALATIGDLV--KATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGL 536
+ + LV +AT G ++ KG + Q V++ F G + +I AT++ EEGL
Sbjct: 698 VRWANSTDGLVDLRATFLTGSNAAADKKGLTSSQQNDVIKSFANGRHQLIFATTVAEEGL 757
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGR 565
DI D VI + S IQ GR +
Sbjct: 758 DIQACDNVIRYQYVTSMTARIQSRGRARK 786
>gi|296812107|ref|XP_002846391.1| dicer-like protein 2 [Arthroderma otae CBS 113480]
gi|238841647|gb|EEQ31309.1| dicer-like protein 2 [Arthroderma otae CBS 113480]
Length = 1437
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 129/508 (25%), Positives = 229/508 (45%), Gaps = 55/508 (10%)
Query: 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV-FAAPSRPLV 166
V R YQ + + +L N +VA+ TG GKT IA + I + P KIV F AP PL
Sbjct: 55 VKSRAYQVEMLEESLKQNIIVAMDTGSGKTQIAILRIRHELERCPIHKIVWFLAPKVPLA 114
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRAS------FWKTKRVFFVTPQVLEKDIQSG 220
QQ A +P T +TG + + ++ F R+ TPQVL + +G
Sbjct: 115 EQQYLAISK--QLPAYQTRILTGADNLERWSTQKIWDAFLLNTRIVVSTPQVLLDALSNG 172
Query: 221 TCLMKYLVCLVIDEAH---------RATGNYAYCTAIRELMSVPVQLRILALTATP--GS 269
++ + LV DEAH R N+ Y + +L IL LTA+P S
Sbjct: 173 FITLRRIALLVFDEAHHCVKSAPENRIMQNF-YHAQVHQLRKTNDLPYILGLTASPTSSS 231
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329
+ ++ + NL+ + + N +++ +VH EL +V ++ + +NN EV
Sbjct: 232 AEDALRQLELNLH-ACCKTPNIHREEMMQFVHIP--ELRKVSYQKDLMLLNNL--EV--K 284
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQA---PPPNLPQIK--FGEVEAYFGALI 384
+ + L++I + + +Q S++++ A P L Q+K F ++ F L
Sbjct: 285 FFAMLNSIDIQDDPFFQRYKGKHDRKSQERYTLALERKTPCLIQLKRCFSKIVYMFSEL- 343
Query: 385 TLYHIRRLLSSHGIRPAYEMLEEKLKQG------SFARFMSKNEDIRKVKLLMQQSISHG 438
L+ +S R A++ + + Q A F+ N + ++++ ++ H
Sbjct: 344 GLWAASTYISE-IYRRAHDKKAKLIDQNWSEWDKDDASFIC-NAMLPVIEIMGER---HW 398
Query: 439 AQSP-KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFI 495
+P +S+ ++ L+ ++ SR IIF R + + + ++ L +K+ F+
Sbjct: 399 DTAPDSVSQKVDHLIHLLSSEHTGTSRGIIFVEQRATAVMLTHLISQHPKLTHIKSDYFL 458
Query: 496 GQSSGKASKGQSQKVQQA-----VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
G S+ A K ++ + + ++G N++VATS+ EEG+D+ DLV+CFD
Sbjct: 459 GNSAFAARKSDITELSKPGDMKDSINDLKSGKKNLLVATSVLEEGIDVSACDLVVCFDPP 518
Query: 551 VSPLRMIQRMGRTGRKHDGRIPHIFKPE 578
+QR GR + + + IF E
Sbjct: 519 KQLRSFVQRRGRARKANSKYV--IFHAE 544
>gi|330798142|ref|XP_003287114.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
gi|325082892|gb|EGC36360.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
Length = 2341
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 116/478 (24%), Positives = 203/478 (42%), Gaps = 66/478 (13%)
Query: 125 NTLVALPTGLGKTLIAAVVIYNFFRW------FPDGKIV--FAAPSRPLVMQQIEACHNI 176
NTL+ LPTG+GKTLI+ + + F R D K V F PLV QQ +A
Sbjct: 276 NTLLILPTGMGKTLISIMGLMEFHRLNNSQEDTGDSKRVCLFLVDRVPLVAQQAKAIEEY 335
Query: 177 VGIPQEWTIDMTGQISPTKRASFWKTKR--VFFVTPQVLEKDIQSGTCLMKYLVCLVIDE 234
+ TI + G+I+ S K K V T ++S ++ +V DE
Sbjct: 336 SNLK---TIKLYGEINKEDLRSKIKEKEYDVLVSTVGSFVSLLESKYVKIEEFYFIVFDE 392
Query: 235 AHRATG-NYAYCTAIRELMSVPVQL--RILALTAT------------PGSKQQTIQHIID 279
H A G ++ + I + ++ RIL LTA+ +K +TI+ ++
Sbjct: 393 VHHAGGGSHPFNQTINFIKKSDIKTWPRILGLTASLINIGNNTDEVIVSNKIKTIEDLML 452
Query: 280 NLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL----S 335
+ L++ +E + K +++ + + + I ++R ++RL +
Sbjct: 453 SKIFKPLKFLSEELTE--------KPTIVDYSANDQEKQAEDIIKTLLRDQSARLKDMVT 504
Query: 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAY-----FGALITLYHIR 390
+G D P + FR A L +I F E +L+ ++ +
Sbjct: 505 KVGKNPYNDEDLDDPTSI-----SFRFA----LERIIFKAKENLTIVNRCRSLLMIFELF 555
Query: 391 RLLSSHG----IRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSK 446
+L+++G + +++E + Q + ++ E +R + L S K S
Sbjct: 556 SILATNGPLQTLEELVKIIEIEENQDYHSEYL---EALRTTEALFDDHSDLNRYSSKYSV 612
Query: 447 MLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALA--TIGDLVKATEFIGQSSGKASK 504
LE L D ++I+F R + L D++ +GQS
Sbjct: 613 FLEQLYGFLTQNDVSSIKIIVFVESRAGAARLTELLKKEAFNDILNCKLLVGQS---GDD 669
Query: 505 GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
G S QQ +++KFR G +IV+T++ EEG+DI E ++VIC+D+ +S ++QR GR
Sbjct: 670 GMSSHKQQKIIKKFRDGKCKLIVSTNVLEEGIDIKECNMVICYDSVLSLKSLVQRRGR 727
>gi|319656775|gb|ADV58759.1| retinoic acid inducible protein I [Anser anser]
Length = 934
Score = 89.7 bits (221), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 121/509 (23%), Positives = 218/509 (42%), Gaps = 75/509 (14%)
Query: 111 RDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLV 166
R YQ + + A+ N L+ PTG GKT IA +V + F+ P GK+VF A P+
Sbjct: 247 RSYQIELAQPAINGKNALICAPTGSGKTFIALLVCEHHFQNMPAGRKGKVVFLATKVPVY 306
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ ++I G+ E S + + + +TPQ+L +
Sbjct: 307 EQQKNVFKQHFERQGYSIQGVSGE-------NFSNVSVENVIEDNDIIVLTPQILVNSFE 359
Query: 219 SGTCL-MKYLVCLVIDEAHRATGNYAYCTAIRELM-----SVPVQL-RILALTATPG--- 268
GT + ++ DE H TGN+ Y + + S QL +IL LTA+ G
Sbjct: 360 DGTLTSLSVFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSPASQLPQILGLTASVGVGN 419
Query: 269 --SKQQTIQHI---IDNLYISTLEYRNESDQDVSSYVHNRKIE--LIEVEMGQEAVEINN 321
+ ++TI+HI L I + E+ QD+ +++ +I+ L++ + I +
Sbjct: 420 AKNIEETIEHICSLCSYLDIQAISTVRENIQDLQRFMNKPEIDVRLVKRRVHNHFAVIIS 479
Query: 322 RIWEVIRPYTSRLSAIGLL-QN--RDYQTLS----------PVDLLNSRDKFRQAPPPNL 368
+ ++ ++G + QN +D+ T LL DK ++
Sbjct: 480 DLMSETEALMRKIYSVGTVSQNSRKDFGTQKYEHWIVVTQRKCRLLQLEDKEEESRICRA 539
Query: 369 PQIKFGEVEAYFGALI---------TLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMS 419
I + Y ALI L ++ ++ P Y LE+ L A+F
Sbjct: 540 LFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGP-YTELEQHLT----AKFQE 594
Query: 420 KNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM 479
K ++ + S ++PKL ++ +L D + +P+ +R ++F+ R V +
Sbjct: 595 KEPELTAL------SKDETNENPKLEELACILDDAY-CYNPQ-TRTLLFAKTRALVAALK 646
Query: 480 NALAT--IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG-GYNVIVATSIGEEGL 536
+ I +K +G+ G + Q+ VL+ F+ +++ATS+ +EG+
Sbjct: 647 KCMEENPILSYIKPDVLMGRGRRDQKTGMTLPSQKGVLDAFKTSKDSRLLIATSVADEGI 706
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGR 565
DI + +LV+ ++ + + +MIQ GR GR
Sbjct: 707 DIAQCNLVVLYEYSGNVTKMIQVRGR-GR 734
>gi|348680026|gb|EGZ19842.1| hypothetical protein PHYSODRAFT_558487 [Phytophthora sojae]
Length = 2706
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 83/165 (50%), Gaps = 10/165 (6%)
Query: 110 VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ 169
+R YQ +T +AL NT+V LPTG GKTL+A V+ PD +VF P+ PLV QQ
Sbjct: 221 LRRYQVELTLSALLENTIVYLPTGCGKTLVAIKVMEEMKHLNPDKLVVFFVPTGPLVSQQ 280
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK-----RVFFVTPQVLEKDIQSGTCLM 224
+ +GQ T A+ K VTPQ + +G +
Sbjct: 281 AAYIRRESNFQ---VAEFSGQHGRTTAATSAPIKVDGGFDAVVVTPQYFLNLLFNGRTSI 337
Query: 225 KYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR--ILALTATP 267
+V DEAH ATGN+ YC ++ L +V +++R ILALTA+P
Sbjct: 338 TDYSTMVFDEAHHATGNHPYCELLKNLATVDLRVRPHILALTASP 382
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 444 LSKMLEVLVDHFKTKDPKH-SRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSG 500
+S + ++ D + + H SR I+F R + + A+ ++ L + T F+G +S
Sbjct: 593 ISNRVHLVADCIRKANFDHDSRAIVFVRRRKTAIVLAKAMESLEVLRELNPTRFVGHNSY 652
Query: 501 KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+ + + Q+ L++FR G ++VAT++ EEGLD+ E LVI FD V +IQ
Sbjct: 653 EGMSWEEE--QRPTLDRFRQGRIRLLVATNVLEEGLDVPECSLVIQFDGVVGVTSLIQSR 710
Query: 561 GR 562
GR
Sbjct: 711 GR 712
>gi|297812215|ref|XP_002873991.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319828|gb|EFH50250.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1693
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 129/482 (26%), Positives = 208/482 (43%), Gaps = 48/482 (9%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK---IVFAAPSRPLVM 167
R YQ + K A+ N +V L TG GKT IA +VIY K +F AP+ LV
Sbjct: 120 RRYQVELCKKAMEENIIVYLGTGCGKTHIAVMVIYELGHLVLSPKKSVCIFLAPTVALVE 179
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQSGTCL 223
QQ + + V + + G+ K S W+ + V +TPQ+L ++Q
Sbjct: 180 QQAKVIADSVNF--KVAVHCGGK-RIVKSHSEWEREISENEVLVMTPQILLHNLQHCFIR 236
Query: 224 MKYLVCLVIDEAHRA--TGNYAYCTAIR-----ELMSVPVQLRILALTATPGSKQQTIQH 276
M+ + L+ DE H A N+ Y ++ E + P RI +TA+P + + Q
Sbjct: 237 MECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQRP---RIFGMTASPVVGKGSFQS 293
Query: 277 IIDNLYISTLEYRNESDQDVSSYVHNRKIE------LIEVEMGQEAV----EINNRIWEV 326
+NL S N D V S N +++ +++V Q A+ + R +
Sbjct: 294 --ENLSKSINSLENLLDAKVYSVESNVQLDGFVSSPIVKVYYYQSAISDASQSTIRYENM 351
Query: 327 IRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNL--PQIKFGEVEAYFGALI 384
+ R LQ +QT + LLN + + + NL + G A A I
Sbjct: 352 LEDIKQRCLTSIKLQIDTHQTQT---LLNMK-RLLKKTHDNLIYSLVNLGLWGAIQAAKI 407
Query: 385 TLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKL 444
L + G P ++ + L + +D +LL ++ S KL
Sbjct: 408 QLNSDVQ-EEPVGENPKSKICDTYLSLAAEVLSSGVAKDESASELLSLAALKEPLFSRKL 466
Query: 445 SKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRD---IMNALATIGDLVKATEFIGQSSGK 501
+++E+L F+ + H + IIF N + R I+N L + K+ +G SSG
Sbjct: 467 VQLIEIL-SVFRLE--PHMKCIIFVNRIVTARTLSCILNNLELLRSW-KSDFLVGLSSGL 522
Query: 502 ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMG 561
K S++ + +L++F++ N++VAT +GEEGLDI LVI +D + IQ G
Sbjct: 523 --KSMSRRGMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRG 580
Query: 562 RT 563
R
Sbjct: 581 RA 582
>gi|308466625|ref|XP_003095565.1| CRE-DRH-3 protein [Caenorhabditis remanei]
gi|308245160|gb|EFO89112.1| CRE-DRH-3 protein [Caenorhabditis remanei]
Length = 979
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 133/527 (25%), Positives = 229/527 (43%), Gaps = 93/527 (17%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFR-------WFPDGKIVFAAP 161
+R YQ + +TAL N ++ PTG GKT +A IY + + ++V P
Sbjct: 209 LRTYQEELVQTALEGKNCVIIAPTGSGKTEVA---IYAAMKHISRREAFGEHSRVVLVVP 265
Query: 162 SRPLVMQQ----IEACHN---IVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLE 214
PLV QQ ++ C+ + G D S R + +TPQ+L
Sbjct: 266 KIPLVTQQKERFLKYCNGKYVVNGFHGSEKSD-----SGEGRRDDVLASHIVVMTPQILI 320
Query: 215 KDIQSGTCLMKYLV----CLVIDEAHRATGNYAYCTAIRELMSVPV-QLRILALTAT--- 266
+QS + V ++ DE H TGN+AY R + + +I+ LTA+
Sbjct: 321 NMLQSVRRNERLYVSDFSMMIFDEVHYTTGNHAYVNLNRIVQEWEYDKPQIIGLTASLNV 380
Query: 267 PGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEV 326
S+Q I +++ +Y S L N +S+ H I+ E+ + + ++ I EV
Sbjct: 381 NASQQTDINSMLNGIY-SMLALLNAPH--LSTITHQSSID----ELNKYVSKPDDTI-EV 432
Query: 327 IRPYTSRLSAI--GLLQNRDYQTLSPVDLLN----------SRDKFRQAPPPNLPQIKFG 374
++P + L + L + Y+ ++ ++ L+ S F+ A P +F
Sbjct: 433 VQPGENVLRSHIDNYLNTKHYKLVAELEKLSKSRHNCFPAGSFRSFKNAKPK-----EFM 487
Query: 375 EVEAYFGALIT----------------LYHIRRLLSSHGI------RPAYEMLEEKLKQG 412
E+ +LI +IR + + GI A+ +EE ++Q
Sbjct: 488 LYESLVQSLIQDLNKLNTPDKMVAQKWTKYIRVYIEARGIVDVMPAMVAFNFMEESIRQL 547
Query: 413 SFARFMSKNEDIRKVKLL--MQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSN 470
+ + + D K+ ++Q S G + + K+ LV+ FK + SRVIIF
Sbjct: 548 NSEHTLDQFSDFLTDKVYDPLKQR-SEGVEPEIVKKLKTTLVNQFK--EQPDSRVIIFVT 604
Query: 471 FRGSVRDIMNALATIGDL---------VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG 521
R + + + L G L K ++ ++ S QS + QQ VLE+F +G
Sbjct: 605 QRNTAQRVSEFLNESGILEQFLNTTTRQKTVGYVLGTNNTGSVQQSPQEQQRVLEQFNSG 664
Query: 522 GYNVIVATSIGEEGLDIMEVDLVICFD-ANVSPLRMIQRMGRTGRKH 567
VIVATS+ EEGLD+ +L+I ++ ++ S ++++QR GR K+
Sbjct: 665 KLKVIVATSVVEEGLDVTSCNLIIKYNCSSASAIQLVQRRGRARAKN 711
>gi|126326479|ref|XP_001374256.1| PREDICTED: interferon-induced helicase C domain-containing protein
1 [Monodelphis domestica]
Length = 1023
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 125/530 (23%), Positives = 223/530 (42%), Gaps = 103/530 (19%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPSRP 164
+R YQ + + AL N ++ +PTG GKT +A + + + GK++ P
Sbjct: 314 LRSYQMEVAEPALEGKNIIIIIPTGSGKTRVAVYIAKDHLDKKKKASEPGKVMVLVNKVP 373
Query: 165 LVMQQI--------EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR---VFFVTPQVL 213
LV Q + + C+ ++G+ + + + SF + R V T Q+L
Sbjct: 374 LVDQHLRKEFNPFLKKCYRVIGVSGDSQL----------KISFPEVVRSYDVIISTAQIL 423
Query: 214 EKDI-------QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM------------SV 254
E + G L + + ++IDE H Y T +R + +
Sbjct: 424 ENSLLDSENGDDDGVQLSDFSL-IIIDECHHTNKEAVYNTIMRRYVKQKMKNCRLKKANK 482
Query: 255 PV--QLRILALTATPGSKQQTIQ-----HIID---NLYISTLEYRNESDQDVSSYVHNRK 304
PV Q +IL LTA+PG T Q HI+ NL S + E+ +S++
Sbjct: 483 PVVPQPQILGLTASPGVGGATKQAKAEDHILQLCANLDASMIVTVKEN----ASFLK--- 535
Query: 305 IELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLN--SRDKF-- 360
E ++ + + +NR P+ +L I + +++ ++P L S ++F
Sbjct: 536 -EQVKEPCKKFVIAADNRE----NPFKKKLVEI-MTNIQNFCQMNPTSDLGTQSYEQFVI 589
Query: 361 ----RQAPPPNLPQIKFGE-VEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFA 415
R A N + E + Y AL IR L + + Y +EK K+ +
Sbjct: 590 QKEKRAAKEGNCKERVCAEHLRKYNEALQINDTIRMLDAYQHLESFYN--DEKEKKMATQ 647
Query: 416 RFMSKNEDIRKVKL-------------------LMQQSISHGAQSPKLSKMLEVLVDHFK 456
+ + +D K L L + +++ ++ KL+K+ +++ F
Sbjct: 648 EYDQEEDDNEKKALKVDETDTFLLDLFYENKKELKKLAMTPDYENEKLTKLRNTIMEEFT 707
Query: 457 TKDPKHSRVIIFSNFRGSVRDI---MNALATIGDL-VKATEFIGQSSGKASKGQSQKVQQ 512
D +R IIF+ R S + +N++ ++ VKA IG + K +Q Q+
Sbjct: 708 KTDGSVARGIIFTKTRQSAYSLSQWINSIEKFAEVGVKAHHLIGAGNSSEFKAMTQNEQK 767
Query: 513 AVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
V+ FR G N+++AT++ EEGLDI E ++VI + + + M+Q GR
Sbjct: 768 EVINNFRTGKINLLIATTVAEEGLDIKECNIVIRYSLVTNEIAMLQARGR 817
>gi|121714731|ref|XP_001274976.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1]
gi|158706439|sp|A1C9M6.1|DCL2_ASPCL RecName: Full=Dicer-like protein 2; Includes: RecName:
Full=Endoribonuclease dcl2; Includes: RecName:
Full=ATP-dependent helicase dcl2
gi|119403130|gb|EAW13550.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1]
Length = 1389
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 214/515 (41%), Gaps = 93/515 (18%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV-FAAPSRPLVMQQ 169
R+YQ + + ++ N +VA+ TG GKT IA + I P KI+ F AP+ L QQ
Sbjct: 17 RNYQLEMLEASMKENIIVAMDTGSGKTHIAVLRIKAELDSCPPDKIIWFLAPTVALCTQQ 76
Query: 170 IEACHNIVG--IPQEWTIDMTG--QISPTKRASFW----KTKRVFFVTPQVLEKDIQSGT 221
H ++ +P T +TG ++ + W K RV T VL + G
Sbjct: 77 ----HKVIASNLPAVQTRTLTGLDKVELWTEQAIWDAILKDVRVVVSTYAVLADALSHGF 132
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELM----------SVPVQLRILALTATPGSKQ 271
M L ++ DEAH +A +++ +VP RI+ LTA+P +
Sbjct: 133 MRMSRLALIIFDEAHHCMRKHAANKIMQDFYHPTVSKFGPSAVP---RIMGLTASPVVRS 189
Query: 272 Q-----TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVE----MGQEAVEINNR 322
TI+ +D + + +R Q++ + H +++ + E MG + R
Sbjct: 190 NREELFTIETNLDAVCKTPRAHR----QELLKFSHRPELKQLLYEPPDPMGLQVSSQTLR 245
Query: 323 I----WEVIR----PYTSRL--SAI-------GLLQNRDY---QTLSPVDLLNSRDKFRQ 362
WE + PY RL S++ L+ + + Q VD SR F +
Sbjct: 246 ALIEAWETLDIEDDPYVKRLRKSSLDGGALEKALMTGKTFCREQLKRFVD--RSRHIFEE 303
Query: 363 APPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK-- 420
GE A + ++ H++ + + + ++ E + F+SK
Sbjct: 304 ----------LGEWAADYYIYTSIQHLKTRVQTSYMTGDWDEAE----RAYLVSFLSKLP 349
Query: 421 NEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMN 480
DI Q ++S A ++S LE L+ D +IF R +V + +
Sbjct: 350 AADI-------QITLSDAA-CLRISPKLEALIGFLDAMDDPEFSGLIFVKQRATVSVMTD 401
Query: 481 ALAT---IGDLVKATEFIGQSSGKASKG-----QSQKVQQAVLEKFRAGGYNVIVATSIG 532
LA + ++ ++G S+ SK S Q + L+ FR+G N+I+AT +
Sbjct: 402 LLAVHPRTRERFRSAAYVGWSNSSGSKDFLGNLLSMHGQLSTLDDFRSGHKNLIIATDVL 461
Query: 533 EEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH 567
EEG+DI +V+C+D + +QR GR +K
Sbjct: 462 EEGIDISACSVVVCYDKPPNLKSFVQRRGRARQKQ 496
>gi|449514052|ref|XP_002194560.2| PREDICTED: probable ATP-dependent RNA helicase DDX58 [Taeniopygia
guttata]
Length = 927
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 121/510 (23%), Positives = 226/510 (44%), Gaps = 67/510 (13%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R YQ + + A+ NTL+ PTG GKT +A ++ + F+ P G K+VF A P+
Sbjct: 246 RSYQIELAQPAIDGKNTLICAPTGSGKTFVAVLICEHHFQNIPSGRKAKVVFLATKMPVY 305
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQ-ISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC-LM 224
QQ + + G+ ++ + + + +TPQ+L + G +
Sbjct: 306 EQQKNVFRQHFERSGYFVQGICGETVANISVENVIQDSDIIVLTPQILVNIMDKGILSSL 365
Query: 225 KYLVCLVIDEAHRATGNYAYCTAIRELM-----SVPVQL-RILALTATPG-----SKQQT 273
++ DE H GN+ Y + + S QL +I+ LTA+ G S ++T
Sbjct: 366 SIFTLMIFDECHNTAGNHPYNVLMTRYLDQKFDSSAKQLPQIVGLTASVGVGNAKSTKET 425
Query: 274 IQHI---IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
++HI L I + E+ QD+ + + +I + V+M + NR ++I
Sbjct: 426 VEHICTLCSYLDIQAISTVRENKQDLQRFANKPEIHIRWVKMRAQ-----NRFADII--- 477
Query: 331 TSRLSAIGLLQNRDYQ--TLSPVD------------LLNSRDKFRQAPPPNLPQIKFGEV 376
+ +S +L + Y T+S ++ +++++ K R L Q++ E
Sbjct: 478 SGLMSETEVLMRKIYSVDTISQINKIYFGTQRYEHWIVSTQKKCR------LLQLEDKEK 531
Query: 377 EAYF--GALITLYHIRR----LLSSHGIR--PAYEMLEE---KLKQGSFARFMSK-NEDI 424
E+ I H+R+ L+ S R A L E +K G + + E
Sbjct: 532 ESSICRDLFICTEHLRKFNDALIISEDARIEDALAYLNEFFTNVKNGPYTELEKQLTEKF 591
Query: 425 RKVKL-LMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALA 483
++++ L S ++PKL + L ++D +P+ +R I+F+ R V + +
Sbjct: 592 QEIEQELTALSKDESNENPKLEE-LACILDEAYHYNPQ-TRTILFAKTRALVAALKKWVE 649
Query: 484 T--IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG-GYNVIVATSIGEEGLDIME 540
+ +K +G+ + G + +Q+ VL+ FR +++ATS+ +EG+DI E
Sbjct: 650 ANPLLSHIKPDVMMGKGRRDQNVGMTLPMQKGVLDAFRNDKDIRLLIATSVADEGIDITE 709
Query: 541 VDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
+LV+ ++ + +MIQ GR GR D +
Sbjct: 710 CNLVVLYEYFGNVTKMIQVRGR-GRAKDSK 738
>gi|453081348|gb|EMF09397.1| dicer-like protein 1 [Mycosphaerella populorum SO2202]
Length = 1541
Score = 89.0 bits (219), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 123/524 (23%), Positives = 215/524 (41%), Gaps = 87/524 (16%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKI------------VF 158
R+YQ + + A NT+ L TG GKTLIA +++ RW D +I F
Sbjct: 103 REYQIELFERAKKRNTIAVLDTGSGKTLIAVLLL----RWVIDNEIENRAKGMPVKISFF 158
Query: 159 AAPSRPLVMQQIEACHNIVG--IPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKD 216
S LV QQ + + I + D T + + + +V T ++L +
Sbjct: 159 LVASVTLVYQQFSVLESNLDHKIARLCGADNTDRWDGARWQKEFYENKVVVCTAEILNQA 218
Query: 217 IQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRE--LMSVPV-QLRILALTATP-GSKQQ 272
+ M + L+ DEAH N++Y +++ LM P + RI +TA+P +K
Sbjct: 219 LAHSYIRMSQINLLIFDEAHHTKKNHSYARIVKDFYLMEDPATRPRIFGMTASPIDAKMD 278
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELI----EVEMGQEAVEINNRIWEVIR 328
IQ + E + D +++ E I E MG E++ + +++R
Sbjct: 279 VIQ--------AAWELESLLDSKIATTSDMSLTEAIKKPAEHVMGYESLPRTDYETDLLR 330
Query: 329 PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYH 388
SR I + N F +A E+ + G +
Sbjct: 331 DVKSRYEHIPVFSN----------------VFERA----------AEIACHLGRWCADSY 364
Query: 389 IRRLLSSHGIRPAYEM-LEEKLKQGSFARFMSKNED----IRKVKLLMQ------QSISH 437
I R SH YEM +E+K +R M + +D IR+ +Q + H
Sbjct: 365 ILRAF-SHEKAGKYEMDIEKKFHARRVSREMVELDDAVKEIREAVEYVQTRRNVLDKLVH 423
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD-LVKATEFIG 496
S K+ ++ L F+ + H R I+F + R + R + + + ++ +G
Sbjct: 424 ADISSKVLELHRYLRLQFE-RLSDH-RCIVFVDRRYTARMLHILFSRLSTPHMRGHFLVG 481
Query: 497 QSSGKASKGQSQKVQQAV-LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
++G + QQ + L +FR G N + ATS+ EEGLD+ + +L+I FD + ++
Sbjct: 482 SNNGGLDEDSFTFRQQVMTLMRFRKGEINCLFATSVAEEGLDVPDCNLIIRFDMYTTMIQ 541
Query: 556 MIQRMGRTGRKHDGRIPHIFK----------PEVQFVELSIEQY 589
+Q GR R + + H+ + EV++ E ++ +Y
Sbjct: 542 YVQSRGR-ARNRNSKFIHMIEIGNSTHSQTLNEVRYAEATMRRY 584
>gi|453080784|gb|EMF08834.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 1400
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 126/500 (25%), Positives = 203/500 (40%), Gaps = 66/500 (13%)
Query: 110 VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV-FAAPSRPLVMQ 168
+R YQ + +L N +VA+ TG GKT IA I D ++V F APSR L Q
Sbjct: 22 LRSYQTEMVDRSLKENIIVAMDTGSGKTHIAIARIRAEVERLRDNRLVWFLAPSRTLAEQ 81
Query: 169 QIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQSGTCLM 224
Q A + + + W +V TP VL+ + G +
Sbjct: 82 QYRALDLELSAYGVRLLTGADGVEKWTDQRLWDAVLTNIKVVIATPAVLKDALAHGFVTI 141
Query: 225 KYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR------ILALTATPGS--KQ---QT 273
L V DEAHR T A I +L P + R IL L+A+P + KQ +T
Sbjct: 142 SRLALCVFDEAHRCTKK-APMNQIMQLFYRPARERGEPVPHILGLSASPVTSVKQGGLET 200
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQ---------EAVEINNRIW 324
I+ + +L ++ +R E ++ H EL+ + + +A+ + R +
Sbjct: 201 IESNLHSLAVTPKTHRTELEK------HVNLPELLTIRFSESHTASNRLCDALAVAARSY 254
Query: 325 EVIR-PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKF----GEVEAY 379
++ R PY L+ G +R + L V L +Q + + G A
Sbjct: 255 DLARDPYFVALT--GQHDDRSRKILQQVQLKQETYCLQQLRALDTRAARLHKQLGPSMAQ 312
Query: 380 FGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGA 439
+ + R+ +SS L L + + ED+ + +++ G
Sbjct: 313 WYISTCIRRFRQGMSSEN------FLMPDLSEAERKHLLEIFEDVEQHA---GPAVALGT 363
Query: 440 Q------SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVR---DIMNALATIGDLVK 490
S K +L++L+ H +P +IF R V +++ + + D K
Sbjct: 364 VDDTLVISEKARLLLQILLQH---AEPG-VHCLIFVEQRVQVTALAELLRRVPALEDSYK 419
Query: 491 ATEFIGQSSGKASKGQSQKV-----QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
F+G S+ K + Q L+ FR G NV+VAT++ EEG+DI +LVI
Sbjct: 420 IAGFVGTSTNTNRKISVADLVALSDQSKDLQAFRDGHKNVMVATNVLEEGIDISACNLVI 479
Query: 546 CFDANVSPLRMIQRMGRTGR 565
CFDA + + +QR GR R
Sbjct: 480 CFDAPKNLVSFVQRRGRARR 499
>gi|302370918|ref|NP_001180567.1| interferon-induced helicase C domain-containing protein 1 [Gallus
gallus]
gi|302128865|dbj|BAJ14020.1| melanoma differentiation associated protein-5 [Gallus gallus]
Length = 1001
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 156/668 (23%), Positives = 267/668 (39%), Gaps = 115/668 (17%)
Query: 107 NVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAP 161
++ +RDYQ + K AL N ++ LPTG GKT +A + + + GK++
Sbjct: 298 DLTLRDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVN 357
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASF---WKTKRVFFVTPQVLEKDIQ 218
PLV Q + N I ++G + SF K V T Q+LE +
Sbjct: 358 KVPLVEQHLRKEFNPFLKHWYQVIGLSG--DSELKISFPEVVKRYDVIICTAQILENSLL 415
Query: 219 SGT-----CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
+ T + ++IDE H Y +R + ++ R A P Q
Sbjct: 416 NATEEDESVRLSDFSLIIIDECHHTQKEGVYNNIMRRYLKEKIKNRKQAKENKPLIPQPQ 475
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIR----- 328
I + + + +++++ + N I + + + A ++ N++ E +
Sbjct: 476 ILGLTASPGVGGARSNSKAEEHILKICANLDACRI-MTVKEHASQLKNQVKEPFKKTVIA 534
Query: 329 ------PYTSRLSAIGLLQN-RDYQTLSPVDLLNS--------RDKFRQAPPPNLPQIKF 373
P+ R+ I ++Q+ + Y L P S R++ R A +
Sbjct: 535 DDKRRDPFRERI--IEIMQDIQKYCQLYPKSEFGSQPYEQWVIREERRAAKEEKRKERVC 592
Query: 374 GE-VEAYFGALITLYHIRRLLSSHGIRPAYEML-----------EEKL--KQGSFARFMS 419
E ++ Y AL IR + + + + Y+ L EE L KQ F+
Sbjct: 593 AEHLKKYNDALQINDTIRMVDAYNHLNNFYKELKRRKTAESDDDEEPLVSKQDETDEFLM 652
Query: 420 KNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDI 478
+ +K K L + + + KL K+ L++ F KT++P R IIF+ R S +
Sbjct: 653 RLFHAKK-KQLKELARKPEYDNEKLMKLRNTLMEEFTKTEEP---RGIIFTKTRQSALAL 708
Query: 479 MNALA------TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIG 532
+ + +G +KA IG +K +Q Q+ V++KFR G N+++AT++
Sbjct: 709 YHWIMDNPKFEEVG--IKAHFLIGAGHNSETKPMTQNEQREVIDKFRGGSINLLIATTVA 766
Query: 533 EEGLDIMEVDLVICFDANVSPLRMIQRMGR----------TGRKHDGRIP----HIFKPE 578
EEGLDI E ++VI + + + M+Q GR G + +IF+
Sbjct: 767 EEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFREN 826
Query: 579 VQF------VELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPTSDSTWR 632
+ + E+ E+Y++ K++D EK A+ D Y
Sbjct: 827 MMYKAIRRVQEMPPEEYLN---KIQD---FQLQSIVEKQMKAKRDQRKTY-------KKN 873
Query: 633 PSLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHL------QGLTFSRDDRTFVEDEVSS 686
PSLI F L HK++ S +I+ M H+ Q L R++RT
Sbjct: 874 PSLITF-----LCKNCHKLICSGEDIQVIENMHHVSVKKDFQHLYHKRENRTL------Q 922
Query: 687 DKHLGLQT 694
DKH QT
Sbjct: 923 DKHADYQT 930
>gi|389633725|ref|XP_003714515.1| dicer-like protein 1 [Magnaporthe oryzae 70-15]
gi|158706447|sp|A4RKC3.2|DCL1_MAGO7 RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease DCL1; Includes: RecName:
Full=ATP-dependent helicase DCL1
gi|351646848|gb|EHA54708.1| dicer-like protein 1 [Magnaporthe oryzae 70-15]
Length = 1591
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 129/504 (25%), Positives = 209/504 (41%), Gaps = 103/504 (20%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF------RWFPDGKIV--FAAPS 162
R+YQ + + A NT+ L TG GKTLIA ++I + RW K + F
Sbjct: 109 REYQIELFERAKQKNTIAVLDTGTGKTLIAILLIRHIIELELGARWQGREKRITFFLVDK 168
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVF----------FVTPQV 212
LV QQ + + P +TG T R + W +K F T ++
Sbjct: 169 VALVRQQTDHIRANLDFP------VTGLHGDTVR-NLWYSKEYFEKLLQEQEVVVCTAEI 221
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRE--LMSVPVQLR--ILALTATPG 268
L + + + + +V DEAH A N+ Y I++ LM Q R I +TA+P
Sbjct: 222 LYRCLHRSYLNISQVSLVVFDEAHHAKKNHVYARIIKDFYLMEEDCQKRPRIFGMTASPI 281
Query: 269 SKQQTI------QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVE---MGQEAVEI 319
+ T H +++L S E SD+D+ + +R E+ + + QE E+
Sbjct: 282 DTKDTCISYERATHELESLLHS--EIATISDRDLLKVIGSRPQEVRKSYARVLRQENTEL 339
Query: 320 NNRIWEVI-------RPYTSRLSAIGLLQNRDYQTL-------SPVDLLNSRDKFRQAPP 365
N++ E++ + + S A+ L L V L+ R + +A
Sbjct: 340 CNQLRELVGNHPLFKQTFDSAEFAVTELGAWCADKLWELCFREEAVSTLDGRVEGSRARD 399
Query: 366 PNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIR 425
P+ + GE SSH + A E L ++Q SF S ED
Sbjct: 400 PD----EVGE------------------SSHEVSNAREALS-LVQQWSF----SPPED-- 430
Query: 426 KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHS-RVIIFSNFRGSVRDIMNALAT 484
G+ S K K++E+L + F ++ + I+F R + ++NAL
Sbjct: 431 ------------GSLSTKTHKLIEILAECFSQASAGNAIQCIVFVKRRDTAV-LLNALCE 477
Query: 485 IGDL------VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDI 538
++ +K IG G + + + Q+ + +FR G N + ATSI EEGLDI
Sbjct: 478 QAEIRTKIPDLKGAFLIGAGRGGNAAFTTTRQQEQTVSRFRDGEINCLFATSIAEEGLDI 537
Query: 539 MEVDLVICFDANVSPLRMIQRMGR 562
++VI FD + + ++ IQ GR
Sbjct: 538 PGCNVVIRFDLHGTTIQYIQSRGR 561
>gi|145358264|ref|NP_197532.3| dicer-like protein 4 [Arabidopsis thaliana]
gi|322510021|sp|P84634.2|DCL4_ARATH RecName: Full=Dicer-like protein 4
gi|73672051|gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana]
gi|332005447|gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana]
Length = 1702
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 126/491 (25%), Positives = 208/491 (42%), Gaps = 64/491 (13%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK---IVFAAPSRPLVM 167
R YQ + K A N +V L TG GKT IA ++IY K +F AP+ LV
Sbjct: 125 RRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSPKKSVCIFLAPTVALVE 184
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK----TKRVFFVTPQVLEKDIQSGTCL 223
QQ + + V + I G+ K S W+ V +TPQ+L ++Q
Sbjct: 185 QQAKVIADSVNF--KVAIHCGGK-RIVKSHSEWEREIAANEVLVMTPQILLHNLQHCFIK 241
Query: 224 MKYLVCLVIDEAHRAT--GNYAYCTAIR-----ELMSVPVQLRILALTATPGSKQQTIQH 276
M+ + L+ DE H A N+ Y ++ E + P RI +TA+P + + Q
Sbjct: 242 MECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQRP---RIFGMTASPVVGKGSFQS 298
Query: 277 IIDNLYISTLE-------YRNESDQDVSSYVHNRKIELIEV-----EMGQEAVEINNRIW 324
+ I++LE Y ES+ + +V + +++ + Q + N +
Sbjct: 299 ENLSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSALSDASQSTIRYENMLE 358
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNL--PQIKFGEVEAYFGA 382
++ + + L L+ QTL + L R NL + G A A
Sbjct: 359 DIKQRCLASLKL--LIDTHQTQTLLSMKRLLKRSH------DNLIYTLLNLGLWGAIQAA 410
Query: 383 LITLYHIRRLLSSHGIR-------PAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSI 435
I +L S H ++ P ++ + L + A +D LL ++
Sbjct: 411 KI------QLNSDHNVQDEPVGKNPKSKICDTYLSMAAEALSSGVAKDENASDLLSLAAL 464
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRD---IMNALATIGDLVKAT 492
S KL +++++L F+ + H + IIF N + R I+N L + K+
Sbjct: 465 KEPLFSRKLVQLIKIL-SVFRLE--PHMKCIIFVNRIVTARTLSCILNNLELLRSW-KSD 520
Query: 493 EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
+G SSG K S++ + +L++F++ N++VAT +GEEGLDI LVI +D +
Sbjct: 521 FLVGLSSGL--KSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPET 578
Query: 553 PLRMIQRMGRT 563
IQ GR
Sbjct: 579 VTSFIQSRGRA 589
>gi|291191927|gb|ADD83027.1| melanoma differentiation-associated protein 5 [Gallus gallus]
Length = 1001
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 156/668 (23%), Positives = 267/668 (39%), Gaps = 115/668 (17%)
Query: 107 NVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAP 161
++ +RDYQ + K AL N ++ LPTG GKT +A + + + GK++
Sbjct: 298 DLTLRDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVN 357
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASF---WKTKRVFFVTPQVLEKDIQ 218
PLV Q + N I ++G + SF K V T Q+LE +
Sbjct: 358 KVPLVEQHLRKEFNPFLKHWYQVIGLSG--DSELKISFPEVVKGYDVIICTAQILENSLL 415
Query: 219 SGT-----CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
+ T + ++IDE H Y +R + ++ R A P Q
Sbjct: 416 NATEEDESVRLSDFSLIIIDECHHTQKEGVYNNIMRRYLKEKIKNRKQAKENKPLIPQPQ 475
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIR----- 328
I + + + +++++ + N I + + + A ++ N++ E +
Sbjct: 476 ILGLTASPGVGGARSNSKAEEHILKICANLDACRI-MTVKEHASQLKNQVKEPFKKTVIA 534
Query: 329 ------PYTSRLSAIGLLQN-RDYQTLSPVDLLNS--------RDKFRQAPPPNLPQIKF 373
P+ R+ I ++Q+ + Y L P S R++ R A +
Sbjct: 535 DDKRRDPFRERI--IEIMQDIQKYCQLYPKSEFGSQPYEQWVIREERRAAKEEKRKERVC 592
Query: 374 GE-VEAYFGALITLYHIRRLLSSHGIRPAYEML-----------EEKL--KQGSFARFMS 419
E ++ Y AL IR + + + + Y+ L EE L KQ F+
Sbjct: 593 AEHLKKYNDALQINDTIRMVDAYNHLNNFYKELKRRKTAESDDDEEPLVSKQDETDEFLM 652
Query: 420 KNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDI 478
+ +K K L + + + KL K+ L++ F KT++P R IIF+ R S +
Sbjct: 653 RLFHAKK-KQLKELARKPEYDNEKLMKLRNTLMEEFTKTEEP---RGIIFTKTRQSALAL 708
Query: 479 MNALA------TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIG 532
+ + +G +KA IG +K +Q Q+ V++KFR G N+++AT++
Sbjct: 709 YHWIMDNPKFEEVG--IKAHFLIGAGHNSETKPMTQNEQREVIDKFRGGSINLLIATTVA 766
Query: 533 EEGLDIMEVDLVICFDANVSPLRMIQRMGR----------TGRKHDGRIP----HIFKPE 578
EEGLDI E ++VI + + + M+Q GR G + +IF+
Sbjct: 767 EEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFREN 826
Query: 579 VQF------VELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPTSDSTWR 632
+ + E+ E+Y++ K++D EK A+ D Y
Sbjct: 827 MMYKAIRRVQEMPPEEYLN---KIQD---FQLQSIVEKQMKAKRDQRKTY-------KKN 873
Query: 633 PSLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHL------QGLTFSRDDRTFVEDEVSS 686
PSLI F L HK++ S +I+ M H+ Q L R++RT
Sbjct: 874 PSLITF-----LCKNCHKLICSGEDIQVIENMHHVSVKKDFQHLYHKRENRTL------Q 922
Query: 687 DKHLGLQT 694
DKH QT
Sbjct: 923 DKHADYQT 930
>gi|161783812|sp|Q7SCC1.3|DCL2_NEUCR RecName: Full=Dicer-like protein 2; Includes: RecName:
Full=Endoribonuclease dcl-2; Includes: RecName:
Full=ATP-dependent helicase dcl-2
gi|18376024|emb|CAB91758.2| related to RNA helicase/RNAseIII CAF [Neurospora crassa]
Length = 1540
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 123/491 (25%), Positives = 205/491 (41%), Gaps = 64/491 (13%)
Query: 105 PVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164
P + R YQ + + +L N +VAL + +V ++W G+I F P+
Sbjct: 66 PAALTARAYQLEMFEASLKQNIIVALFSD------RVMVADGHWQWQDSGRIWFLTPTVA 119
Query: 165 LVMQQIEACHNIVG--IPQEWTIDMTGQ--ISPTKRASFWKTK----RVFFVTPQVLEKD 216
L QQ H ++ IP I + GQ + + W R+ T Q+L
Sbjct: 120 LARQQ----HRVLQSQIPSVKAIMLCGQDGVDSWSEQAVWDAVLLNVRIVVSTYQILFDA 175
Query: 217 IQSGTCLMKYLVCLVIDEAHRATGNY--------AYCTAIRELMSVPVQLRILALTATPG 268
+ L +VIDEAH +G++ AY A + + VP IL LTA+P
Sbjct: 176 NAHSFVRLDSLSLIVIDEAHNCSGSHPIARLMTEAYLPAKKAGLPVP---SILGLTASPL 232
Query: 269 SKQ-----QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI 323
+ ++ ++D + + +R E H + E++ V G +
Sbjct: 233 KSNNLADIEKLEQVLDAVCRTPTIHREEL------LAHVNRPEMLVVSYGDSGTDPTPT- 285
Query: 324 WEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQ--APPPNLPQIKFGEVEAYFG 381
+++ + + + ++ D L +R+K RQ L Q + V Y
Sbjct: 286 -DLMTRFLEAYHRLDISKDPDVLLLKAQRTERAREKLRQMITKKDTLAQKELRGV--YNR 342
Query: 382 ALITLYHIRRLLSSHGI-RPAYEMLEEKLKQGSFARFMSKNEDIRKVKL--LMQQSISHG 438
AL+ I + + + R ML E + A+ E +R + + + ++ I
Sbjct: 343 ALLVRREIGPWAADYYLTRTVSHMLAELERGEPPAQHRYIGEALRSIPIPAISKEPIQ-- 400
Query: 439 AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT---IGDLVKATEFI 495
SPK+ +L+VL H +DP I+F R V + + ++T D + I
Sbjct: 401 -LSPKVQTLLKVLASH--QQDPVG---IVFVKERVMVSIVTHIISTHPLTKDRYRTASMI 454
Query: 496 GQSS--GKASK--GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
G +S GKA ++K LE FR G +N++VATS+ EEG+D+ +LVICFD
Sbjct: 455 GTASVPGKARNHMDMTKKEDMTSLEGFRLGRFNLLVATSVLEEGIDVPICNLVICFDEPS 514
Query: 552 SPLRMIQRMGR 562
+ IQR GR
Sbjct: 515 NIKSFIQRRGR 525
>gi|440468299|gb|ELQ37466.1| RNase3 domain-containing protein [Magnaporthe oryzae Y34]
gi|440485699|gb|ELQ65629.1| RNase3 domain-containing protein [Magnaporthe oryzae P131]
Length = 1658
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 129/505 (25%), Positives = 209/505 (41%), Gaps = 103/505 (20%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF------RWFPDGKIV--FAAPS 162
R+YQ + + A NT+ L TG GKTLIA ++I + RW K + F
Sbjct: 109 REYQIELFERAKQKNTIAVLDTGTGKTLIAILLIRHIIELELGARWQGREKRITFFLVDK 168
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVF----------FVTPQV 212
LV QQ + + P +TG T R + W +K F T ++
Sbjct: 169 VALVRQQTDHIRANLDFP------VTGLHGDTVR-NLWYSKEYFEKLLQEQEVVVCTAEI 221
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRE--LMSVPVQLR--ILALTATPG 268
L + + + + +V DEAH A N+ Y I++ LM Q R I +TA+P
Sbjct: 222 LYRCLHRSYLNISQVSLVVFDEAHHAKKNHVYARIIKDFYLMEEDCQKRPRIFGMTASPI 281
Query: 269 SKQQTI------QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVE---MGQEAVEI 319
+ T H +++L S E SD+D+ + +R E+ + + QE E+
Sbjct: 282 DTKDTCISYERATHELESLLHS--EIATISDRDLLKVIGSRPQEVRKSYARVLRQENTEL 339
Query: 320 NNRIWEVI-------RPYTSRLSAIGLLQNRDYQTL-------SPVDLLNSRDKFRQAPP 365
N++ E++ + + S A+ L L V L+ R + +A
Sbjct: 340 CNQLRELVGNHPLFKQTFDSAEFAVTELGAWCADKLWELCFREEAVSTLDGRVEGSRARD 399
Query: 366 PNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIR 425
P+ + GE SSH + A E L ++Q SF S ED
Sbjct: 400 PD----EVGE------------------SSHEVSNAREALS-LVQQWSF----SPPED-- 430
Query: 426 KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHS-RVIIFSNFRGSVRDIMNALAT 484
G+ S K K++E+L + F ++ + I+F R + ++NAL
Sbjct: 431 ------------GSLSTKTHKLIEILAECFSQASAGNAIQCIVFVKRRDTAV-LLNALCE 477
Query: 485 IGDL------VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDI 538
++ +K IG G + + + Q+ + +FR G N + ATSI EEGLDI
Sbjct: 478 QAEIRTKIPDLKGAFLIGAGRGGNAAFTTTRQQEQTVSRFRDGEINCLFATSIAEEGLDI 537
Query: 539 MEVDLVICFDANVSPLRMIQRMGRT 563
++VI FD + + ++ IQ GR
Sbjct: 538 PGCNVVIRFDLHGTTIQYIQSRGRA 562
>gi|334303056|gb|AEG75816.1| retinoic acid inducible protein I [Anser anser]
Length = 933
Score = 88.2 bits (217), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 120/509 (23%), Positives = 219/509 (43%), Gaps = 75/509 (14%)
Query: 111 RDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLV 166
R YQ + + A+ N L+ PTG G+T IA +V + F+ P GK+VF A P+
Sbjct: 246 RSYQIELAQPAINGKNALICAPTGSGRTFIALLVCEHQFQNMPAGRKGKVVFLATKVPVY 305
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ ++I G+ E S + + + +TPQ+L +
Sbjct: 306 EQQKNVFKQHFERQGYSIQGVSGE-------NFSNVSVENVIEDNDIIVLTPQILVNSFE 358
Query: 219 SGTCL-MKYLVCLVIDEAHRATGNYAYCTAIRELM-----SVPVQL-RILALTATPG--- 268
GT + ++ DE H TGN+ Y + + S QL +IL LTA+ G
Sbjct: 359 DGTLTSLSVFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSPASQLPQILGLTASVGVGN 418
Query: 269 --SKQQTIQHI---IDNLYISTLEYRNESDQDVSSYVHNRKIE--LIEVEMGQEAVEINN 321
+ ++TI+HI L I + E+ QD+ +++ +I+ L++ + I +
Sbjct: 419 AKNIEETIEHICSLCSYLDIQAISTVRENIQDLQRFMNKPEIDVRLVKRRVHNHFAVIIS 478
Query: 322 RIWEVIRPYTSRLSAIGLL-QN--RDYQTLS----------PVDLLNSRDKFRQAPPPNL 368
+ ++ ++G + QN +D+ T LL DK ++
Sbjct: 479 DLMSETEALMRKIYSVGTVSQNSRKDFGTQKYEHWIVVTQRKCRLLQLEDKEEESRICRA 538
Query: 369 PQIKFGEVEAYFGALI---------TLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMS 419
I + Y ALI L ++ ++ P Y LE+ L A+F
Sbjct: 539 LFICAEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGP-YAELEQHLT----AKFQE 593
Query: 420 KNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM 479
K ++ + S ++PKL ++ +L D ++ +P+ +R ++F+ R V +
Sbjct: 594 KEPELTAL------SKDETNENPKLEELACILDDAYRY-NPQ-TRTLLFAKARALVAALK 645
Query: 480 NALAT--IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG-GYNVIVATSIGEEGL 536
+ I +K +G+ G + Q+ VL+ F+ +++ATS+ +EG+
Sbjct: 646 KCMEENPILSYIKPDVLMGRGRRDQKTGMTLPSQKGVLDAFKTSKDSRLLIATSVADEGI 705
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGR 565
DI + +LV+ ++ + + +MIQ GR GR
Sbjct: 706 DIAQCNLVVLYEYSGNVTKMIQVRGR-GR 733
>gi|326475978|gb|EGD99987.1| hypothetical protein TESG_07315 [Trichophyton tonsurans CBS 112818]
Length = 1435
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 124/502 (24%), Positives = 218/502 (43%), Gaps = 59/502 (11%)
Query: 105 PVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSR 163
P + R YQ + ++ N +VA+ TG GKT IA + I + R D + F AP
Sbjct: 52 PDTLRSRGYQIEMLDASIKQNIIVAMDTGSGKTQIAILRIRHELERCSNDKLVWFLAPKV 111
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRAS------FWKTKRVFFVTPQVLEKDI 217
PL QQ A +P T +TG + + ++ F R+ TPQ+L +
Sbjct: 112 PLAEQQYRAISQ--QLPAYQTKILTGADNLERWSTQKIWDAFLLNTRIVVSTPQILLDVL 169
Query: 218 QSGTCLMKYLVCLVIDEAH---------RATGNYAYCTAIRELMSVPVQLRILALTATPG 268
+G ++ + LV DEAH + N+ Y I +L IL LTA+P
Sbjct: 170 SNGFITLRRIALLVFDEAHHCVKASPENKIMKNF-YHARIDQLSETNDLPSILGLTASPT 228
Query: 269 SK--QQTIQHIIDNLY--ISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
SK + +++ + NL+ T + +E ++ YVH EL+++ +++ +N
Sbjct: 229 SKLTEDSLRQLEQNLHACCKTPSFHHE---EMMQYVHIP--ELLKISYQKDSTIPHN--- 280
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQA---PPPNLPQIK--FGEVEAY 379
+ + S L+ I + + +Q S ++F +A P L Q+K F V
Sbjct: 281 -MEMKFLSMLNDIDIESDPFFQRYKGKTDRKSIERFMRARDRKTPCLDQLKRCFTRVSHI 339
Query: 380 FGALITLYHIRRLLSSHGIRPAYEMLEE---KLKQGSFARFMSKNED-----IRKVKLLM 431
+G L SS I Y E KL S++ + + ++ V ++
Sbjct: 340 YGEL------GHWASSTFISEIYRRTREKRAKLIDQSWSEWDRDDSSFLCNALKPVVAII 393
Query: 432 QQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--V 489
+ + +S+ +E LVD ++ SR IIF R + + + ++ +L +
Sbjct: 394 GERCWNSTPDA-VSQKVEHLVDLLASELTGTSRGIIFVEQRATAVMLSHLISHYPELAHI 452
Query: 490 KATEFIGQSSGKASKGQSQKVQQA-----VLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
F+G S+ K ++ + ++ ++G N++VATS+ EEG+D+ DLV
Sbjct: 453 MPDYFLGNSAFSDRKADITELSKPGDMKNSIDDLKSGKKNLLVATSVLEEGIDVSACDLV 512
Query: 545 ICFDANVSPLRMIQRMGRTGRK 566
+CFD +QR GR ++
Sbjct: 513 VCFDPPKQLRSFVQRRGRARKQ 534
>gi|326368642|gb|ADZ55452.1| retinoic acid-inducible protein I [Cyprinus carpio]
Length = 946
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 119/509 (23%), Positives = 215/509 (42%), Gaps = 69/509 (13%)
Query: 113 YQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPD-GKIVFAAPSRPLVMQQI 170
YQ +T A+ NT++ PTG GKT++A + + FP+ KIVF A + QQ
Sbjct: 256 YQKELTAAAVQGQNTIICAPTGCGKTIVALAISEYHLKQFPEKAKIVFLATKVDVYEQQY 315
Query: 171 EAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC-LMKYL 227
+ H P M G + + + +T Q+L +QS ++ L
Sbjct: 316 KLFKEHFSSKDPNIRVTGMCGDMDYLSVRWLIEHHDIVVMTAQILVNALQSAEVPSLEIL 375
Query: 228 VCLVIDEAHRATGNYAYCTAIRELM---------SVPVQLRILALTATPG--------SK 270
++ DE H TG + Y + + S+P +I+ LTA+ G
Sbjct: 376 SLILFDECHNTTGKHPYNNIMTRYLDTKLTSSTHSLP---QIVGLTASVGIGSFKNGLEA 432
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVE--MGQEAVEINNRIW---E 325
+ I + NL + E ++ SYVH + EV+ M + I I E
Sbjct: 433 ENNILQLCANLDTRVITTVTEHKDELKSYVHTPEKAFFEVQQCMSHPFIRIIKNIMSNIE 492
Query: 326 VIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALIT 385
+ T + ++ +QNR+Y + + S K + Q+K + E +
Sbjct: 493 QLAQKTFNIESLSNIQNREYGSQKYEQWIVSVQK-----SCKVLQMKNKDEERRICRELY 547
Query: 386 LY--HIRR----LLSSHGIRP--AYEMLEEKLKQGSFARFMSKNEDIRKVKLL------- 430
Y H+R+ L+ + R A + L+ Q A F +E RK+ L
Sbjct: 548 NYTEHLRKYNDALIINEDARTKDALDYLDAFFDQVRNAGF---DETERKLTALYDCQRPQ 604
Query: 431 MQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK 490
+ + + G Q+PKL ++ +L + + D +R ++F R + +A+ D
Sbjct: 605 LLRLATEGEQNPKLDELKFILEEEYHNND--QTRTVMFVKTRA----LADAMKKWIDETD 658
Query: 491 ATEFI--------GQSSGKASKGQSQKVQQAVLEKFRAGGYN-VIVATSIGEEGLDIMEV 541
+ +F+ G+ S G + Q+ +LE F++ + +++ATS+ +EG+DI +
Sbjct: 659 SLKFLKPGVLIGKGRKSNFTGSGMTPNNQKGILESFKSSDQSKMLIATSVADEGIDIPQC 718
Query: 542 DLVICFDANVSPLRMIQRMGRTGRKHDGR 570
+LV+ ++ + ++M+Q GR GR R
Sbjct: 719 NLVLMYEYVGNVVKMVQVRGR-GRAEGSR 746
>gi|313222359|emb|CBY39301.1| unnamed protein product [Oikopleura dioica]
Length = 625
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 7/159 (4%)
Query: 424 IRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKT-KDPKHSRVIIFSNFRGSVRDIMNAL 482
+ K+K ++ + G KL + + L +F T K+ R ++F N R V +I L
Sbjct: 4 VAKLKQIIFKYKHSGEVCNKLKNLGQELEHYFDTMKNGYDVRALVFVNDRSIVEEIRKYL 63
Query: 483 -ATIGDLVKATEFIGQSSGKA-----SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGL 536
V+A+ F+G + + SQK Q LEKF+ G NV++ATSIGEEGL
Sbjct: 64 MENTSANVRASIFVGHGAPTTKLKVTAPKISQKQQLEQLEKFKKGDINVLIATSIGEEGL 123
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
DI + +LV+ +D + + R QR GRTGRKH GRI ++
Sbjct: 124 DISDCNLVVQYDHSNNQTRNAQRSGRTGRKHAGRIIYLM 162
>gi|343176226|gb|AEM00325.1| interferon-induced helicase C domain-containing protein 1 [Gallus
gallus]
Length = 1102
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 156/668 (23%), Positives = 267/668 (39%), Gaps = 115/668 (17%)
Query: 107 NVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAP 161
++ +RDYQ + K AL N ++ LPTG GKT +A + + + GK++
Sbjct: 399 DLTLRDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVN 458
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASF---WKTKRVFFVTPQVLEKDIQ 218
PLV Q + N I ++G + SF K V T Q+LE +
Sbjct: 459 KVPLVEQHLRKEFNPFLKRWYQVIGLSG--DSELKISFPEVVKRYDVIICTAQILENSLL 516
Query: 219 SGT-----CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQT 273
+ T + ++IDE H Y +R + ++ R A P Q
Sbjct: 517 NATEEDESVRLSDFSLIIIDECHHTQKEGVYNNIMRRYLKEKIKNRKQAKENKPLIPQPQ 576
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIR----- 328
I + + + +++++ + N I + + + A ++ N++ E +
Sbjct: 577 ILGLTASPGVGGARSNSKAEEHILKICANLDACRI-MTVKEHASQLKNQVKEPFKKTVIA 635
Query: 329 ------PYTSRLSAIGLLQN-RDYQTLSPVDLLNS--------RDKFRQAPPPNLPQIKF 373
P+ R+ I ++Q+ + Y L P S R++ R A +
Sbjct: 636 DDKRRDPFRERI--IEIMQDIQKYCQLYPKSEFGSQPYEQWVIREERRAAKEEKRKERVC 693
Query: 374 GE-VEAYFGALITLYHIRRLLSSHGIRPAYEML-----------EEKL--KQGSFARFMS 419
E ++ Y AL IR + + + + Y+ L EE L KQ F+
Sbjct: 694 AEHLKKYNDALQINDTIRMVDAYNHLNNFYKELKRRKTAESDDDEEPLVSKQDETDEFLM 753
Query: 420 KNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDI 478
+ +K K L + + + KL K+ L++ F KT++P R IIF+ R S +
Sbjct: 754 RLFHAKK-KQLKELARKPEYDNEKLMKLRNTLMEEFTKTEEP---RGIIFTKTRQSALAL 809
Query: 479 MNALA------TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIG 532
+ + +G +KA IG +K +Q Q+ V++KFR G N+++AT++
Sbjct: 810 YHWIMDNPKFEEVG--IKAHFLIGAGHNSETKPMTQNEQREVIDKFRGGSINLLIATTVA 867
Query: 533 EEGLDIMEVDLVICFDANVSPLRMIQRMGR----------TGRKHDGRIP----HIFKPE 578
EEGLDI E ++VI + + + M+Q GR G + +IF+
Sbjct: 868 EEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFREN 927
Query: 579 VQF------VELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPTSDSTWR 632
+ + E+ E+Y++ K++D EK A+ D Y
Sbjct: 928 MMYKAIRRVQEMPPEEYLN---KIQD---FQLQSIVEKQMKAKRDQRKTY-------KKN 974
Query: 633 PSLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHL------QGLTFSRDDRTFVEDEVSS 686
PSLI F L HK++ S +I+ M H+ Q L R++RT
Sbjct: 975 PSLITF-----LCKNCHKLICSGEDIQVIENMHHVSVKKDFQHLYHKRENRTL------Q 1023
Query: 687 DKHLGLQT 694
DKH QT
Sbjct: 1024 DKHADYQT 1031
>gi|301773535|ref|XP_002922173.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like
[Ailuropoda melanoleuca]
gi|281344530|gb|EFB20114.1| hypothetical protein PANDA_011148 [Ailuropoda melanoleuca]
Length = 684
Score = 87.4 bits (215), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 125/492 (25%), Positives = 207/492 (42%), Gaps = 62/492 (12%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIMWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVSQ 62
Query: 169 QIEACHNIVGIPQEWTID-MTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E + + W I ++G + P RA F R + T ++L+ + S
Sbjct: 63 HCEEFSRM--LDNRWAITTLSGDMGP--RAGFGHLARSHDLIICTAELLQLALASPEEEE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSK----- 270
+ LV+DE H + Y + + + +Q ++L LTA+PG+
Sbjct: 119 HVELHAFSLLVVDECHHTHKDTVYNVILSQYLQHKLQRTRPLPQVLGLTASPGTGGASTL 178
Query: 271 QQTIQHIID---NL----YISTLEYRNE----SDQDVSSY--VHNRKIELIEVEMGQEAV 317
+ + HI+ NL +S YR S Q Y H R ++ G
Sbjct: 179 EGAVDHILQLCANLDTWRIVSPQTYRRHLQEHSPQPCKQYNLCHRRSLD----PFGDTLK 234
Query: 318 EINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFG--E 375
++ +RI + ++ LS QN + Q V+L + A L Q +
Sbjct: 235 KLMDRIHDCLK--MPELSQDYGTQNYEQQV---VELSQA------AAEAGLQQRRVCALH 283
Query: 376 VEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFA-RFMSKNEDIRKVKLLMQQS 434
+ Y AL+ +R + + +R Y+ Q A R++ D K +L +
Sbjct: 284 LRRYNDALLVHDTVRAVDALDSLRDFYDRERTTKTQVLQAERWLLALFDDYKNELAHLAT 343
Query: 435 ISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VK 490
S ++PKL + ++L + F + D R IIF+ R S ++ L L ++
Sbjct: 344 CS--PENPKLEMLEQILREQFGSSDS--PRGIIFTQTRQSTHSLLLWLQQQPGLQTVDIR 399
Query: 491 ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
A IG + + +Q+ QQ V+ KFR G N++VATS+ EEGLDI + ++V+ +
Sbjct: 400 ADLLIGAGTSSQNTHMTQRDQQEVIRKFRVGTLNLLVATSVAEEGLDIPQCNVVVRYGLL 459
Query: 551 VSPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 460 TNEISMVQARGR 471
>gi|170582927|ref|XP_001896352.1| hypothetical protein Bm1_24470 [Brugia malayi]
gi|158596463|gb|EDP34802.1| hypothetical protein Bm1_24470 [Brugia malayi]
Length = 665
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 16/250 (6%)
Query: 98 AAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157
+ + YPVN+P+ YQ + +L++N L+ LP L I+AV + NF RWFP KIV
Sbjct: 43 SVRYLYYPVNMPICRYQKRLILDSLYNNLLLTLPKELDTFFISAVTMLNFHRWFPVQKIV 102
Query: 158 FAAPSRPLVMQQIEACHNIVGIP-QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKD 216
+ V + A V I I + + R + W + F T Q + D
Sbjct: 103 CICKN---VESSLNAAKRFVEITGYSHGICVYANLKKNDRYAEWMQHNIIFATAQSIVAD 159
Query: 217 IQ-----SGTCLMKYLVCLVIDEAHRA-TGNYAYCTAIRELMSVPVQLRILALTATPGSK 270
S CLM V+++AHRA +G++ IR + + RILA T K
Sbjct: 160 FTGRKELSEICLM------VVEDAHRAISGSHPVSELIRNCILQKAEFRILAYTDCKLDK 213
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+Q I+ NL I + + +++S + K+ + + + + I N + + + P
Sbjct: 214 VGELQLIVMNLQIDLIRSLSSIREEISLTFASPKMCKLYINISDDIXHIGNELLKTMEPI 273
Query: 331 TSRLSAIGLL 340
S L G+
Sbjct: 274 ASLLYESGIF 283
>gi|393906842|gb|EJD74417.1| hypothetical protein LOAG_18265 [Loa loa]
Length = 792
Score = 87.0 bits (214), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 134/330 (40%), Gaps = 52/330 (15%)
Query: 104 YPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163
YPVN+PV YQ + +L++N L+ LP L IAAVV++NF RWFP K+V +
Sbjct: 49 YPVNMPVCRYQKRLILDSLYNNMLITLPKELDTFFIAAVVMFNFHRWFPIQKVVCICKNV 108
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ----- 218
+ + I G Q I + + ++R W + + F T +VL D
Sbjct: 109 ESSLNTAKRFAEITGYSQ--GICVYANLKKSERCQKWIQQDIIFATAEVLVADFTGREEL 166
Query: 219 SGTCLM-------------------------KYLV------------CL-VIDEAHRA-T 239
S CLM K LV CL ++++AHRA +
Sbjct: 167 SKICLMIVEDAHRAISGSNPLSELIRNCILQKVLVADFTGREELSKICLMIVEDAHRAIS 226
Query: 240 GNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSY 299
G+ IR + + R+LA T K +Q I+ NL I + + +++S
Sbjct: 227 GSNPLSELIRNCILQKAKFRVLAYTDCKVDKVGQLQLIVMNLQIDLIRSLSSIREEISLV 286
Query: 300 VHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDK 359
+ +I + + ++ I + +V+ P S L G+ D + ++ N
Sbjct: 287 FASPRISKFYITINEDIRHIGKELLKVMEPIASLLCESGIFPTNDIKKIA-----NFSTS 341
Query: 360 FRQAPPPNLPQIKFGEVEAYFGALITLYHI 389
+ Q N + E+ F L++ Y I
Sbjct: 342 YLQKKVQN-GRSHLAEIYCDFFELLSAYDI 370
>gi|238497846|ref|XP_002380158.1| RNA helicase/RNAse III, putative [Aspergillus flavus NRRL3357]
gi|220693432|gb|EED49777.1| RNA helicase/RNAse III, putative [Aspergillus flavus NRRL3357]
Length = 1339
Score = 86.7 bits (213), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 121/486 (24%), Positives = 205/486 (42%), Gaps = 48/486 (9%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ+ + + +L N +VA+ TG GKT IA + I + P F P+ L +QQ
Sbjct: 17 RQYQYEMFEASLKENIIVAMDTGTGKTQIALLRIAHQLEGGGPQKLTWFLTPTVALCLQQ 76
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFW----KTKRVFFVTPQVLEKDIQSGTCLMK 225
E + + + TI ++ K W K K+V T VL + + G +
Sbjct: 77 YEVIRSHLPAVRACTITGLDKVERWKSQYIWDELLKDKQVVVSTHAVLFEALTHGFVRIS 136
Query: 226 YLVCLVIDEAHRATGNYAYCTAIRELM----------SVPVQLRILALTATP--GSKQQT 273
L L+ DEAH + + + SVP IL LTA+P SK Q
Sbjct: 137 QLGLLIFDEAHHCMRRHPANMIMLDFYHPTLRKHGRDSVPC---ILGLTASPVVRSKSQE 193
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKI-----ELIEVEMGQEAVEINNRIWEV-- 326
++ + NL S + Q++++Y H ++ + I+ G A++ W+
Sbjct: 194 MKTLESNLD-SICKTPQVHKQELTTYAHRPELLPIIYKAIDEGPGGRALQALEHAWDTAD 252
Query: 327 IRPYTSRLSAIGLLQNR--DYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI 384
I + G L N +Y+ L L + R + GE A +
Sbjct: 253 IDGDPDAIPQNGSLLNGSGEYKALMVRKTLCNEQIKRFVDRSRHIFAELGEWAADYYICT 312
Query: 385 TLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKL 444
++ +R + + +E E + + F+SK + +V+ + ++ SPKL
Sbjct: 313 SVEQLRTTIRDQSLTMDWEDEE----RAYLSNFLSKLP-VAEVQANLADP-NNFTMSPKL 366
Query: 445 SKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT---IGDLVKATEFIGQSSGK 501
+ ++ L D F DP+ S +IF R +V + L+ D + ++G S G
Sbjct: 367 AALINFL-DKFD--DPEFSG-LIFVKQRVTVSVLARLLSLHPQTRDRFRCAAYVGMSVGS 422
Query: 502 ASK-----GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
+ + K Q+ ++ FR+G N+IV TS+ EEG+D+ +V+CFD +
Sbjct: 423 CRQDMVGDWHNAKKQRGTMDDFRSGRKNLIVTTSVLEEGIDVTACRVVVCFDKPANLKSF 482
Query: 557 IQRMGR 562
IQR GR
Sbjct: 483 IQRRGR 488
>gi|390331521|ref|XP_780548.3| PREDICTED: probable ATP-dependent RNA helicase DDX58-like
[Strongylocentrotus purpuratus]
Length = 858
Score = 86.7 bits (213), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 128/529 (24%), Positives = 217/529 (41%), Gaps = 67/529 (12%)
Query: 106 VNVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIA-AVVIYNFFRWFPDG-------KI 156
V + +RDYQ + AL N +V LPTG GKT +A A++ F P G K
Sbjct: 67 VELKLRDYQEEVLTPALKGQNAMVVLPTGTGKTEVAIALISRRFLARNPVGATNHRRQKS 126
Query: 157 VFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKD 216
VF PLV QQ + C + + + + S + + +T QVL
Sbjct: 127 VFVVNKVPLVKQQKDRCLKYLRGKCKVAGVSGVESNRVPLNSVIDSNDITVLTAQVLVDA 186
Query: 217 IQSGTCLMKY--LVCLVIDEAHRATGNYAYCTAI---RELMSVPVQL---RILALTATPG 268
++ +K + LVIDE H + Y + R+L +L +IL LTA+PG
Sbjct: 187 LKDDNIKLKLSDIALLVIDECHHCQKSNPYNVLMAMYRDLKLNSPELPRPQILGLTASPG 246
Query: 269 --------SKQQTIQHIIDNL---------YISTLEYRNESDQDVSSYVHNRKIE----- 306
++ I + NL Y L R+ S Q++ R IE
Sbjct: 247 VGNSKNTVQAERYITKLCANLDCRISRPKIYADQLNARSSSPQEIPIITKGRPIEDPFFH 306
Query: 307 LIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP 366
I V MG+ I ++I E R + +R + ++ +K +Q
Sbjct: 307 EISVIMGR----IEDKIVEGGRALVEENDEFAKMVSRRGTQIYEQGVVKLEEKIQQT--- 359
Query: 367 NLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQ---GSFARFMSKNED 423
+E G + + L H I + + EK ++ GS A + +N
Sbjct: 360 ---------IENGNGIWELMTCVNYLRDLHAISYMEDYINEKEERNPSGS-ADMILRNMF 409
Query: 424 IRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALA 483
K++ L + + + +P L+++ + L + + S IIF+ R + ++ L
Sbjct: 410 RDKLETLNRNANLPASINPVLNELDKQLKKEYAENEDSSS--IIFTKTRALAKALVKWLN 467
Query: 484 TIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
DL KA FIG ++G + Q +L+ FR ++VATS+ EEGLDI
Sbjct: 468 KDPDLNHTKAEIFIGS----GNQGMTSTEQNRILQLFRDKKCRILVATSVAEEGLDITNC 523
Query: 542 DLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYV 590
++V ++ S + +Q GR +G++ I ++Q +L ++ +
Sbjct: 524 NMVFSYNYVTSDIGYVQTKGRIRADCNGKMFVIVNSDLQLQDLELKTII 572
>gi|169768544|ref|XP_001818742.1| ATP-dependent helicase dcl2 [Aspergillus oryzae RIB40]
gi|121804870|sp|Q2UNX5.1|DCL2_ASPOR RecName: Full=Dicer-like protein 2; Includes: RecName:
Full=Endoribonuclease dcl2; Includes: RecName:
Full=ATP-dependent helicase dcl2
gi|83766600|dbj|BAE56740.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391868391|gb|EIT77606.1| dsRNA-specific nuclease Dicer [Aspergillus oryzae 3.042]
Length = 1377
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 121/486 (24%), Positives = 206/486 (42%), Gaps = 48/486 (9%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV-FAAPSRPLVMQQ 169
R YQ+ + + +L N +VA+ TG GKT IA + I + K+ F P+ L +QQ
Sbjct: 17 RQYQYEMFEASLKENIIVAMDTGTGKTQIALLRIAHQLEGGGPRKLTWFLTPTVALCLQQ 76
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFW----KTKRVFFVTPQVLEKDIQSGTCLMK 225
E + + + TI ++ K W K K+V T VL + + G +
Sbjct: 77 YEVIRSHLPAVRACTITGLDKVERWKSQYIWDELLKDKQVVVSTHAVLFEALTHGFVRIS 136
Query: 226 YLVCLVIDEAHRATGNYAYCTAIRELM----------SVPVQLRILALTATP--GSKQQT 273
L L+ DEAH + + + SVP IL LTA+P SK Q
Sbjct: 137 QLGLLIFDEAHHCMRRHPANMIMLDFYHPTLRKHGRDSVPC---ILGLTASPVVRSKSQE 193
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKI-----ELIEVEMGQEAVEINNRIWEV-- 326
++ + NL S + Q++++Y H ++ + I+ G A++ W+
Sbjct: 194 MKTLESNLD-SICKTPQVHKQELTTYAHRPELLPIICKAIDEGPGGRALQALEHAWDTAD 252
Query: 327 IRPYTSRLSAIGLLQNR--DYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI 384
I + G L N +Y+ L L + R + GE A +
Sbjct: 253 IDGDPDAIPQNGSLLNGSGEYKALMVRKTLCNEQIKRFVDRSRHIFAELGEWAADYYICT 312
Query: 385 TLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKL 444
++ +R + + +E E + + F+SK + +V+ + ++ SPKL
Sbjct: 313 SVEQLRTTIRDQSLTMDWEDEE----RAYLSNFLSKLP-VAEVQANLADP-NNFTMSPKL 366
Query: 445 SKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT---IGDLVKATEFIGQSSGK 501
+ ++ L D F DP+ S +IF R +V + L+ D + ++G S G
Sbjct: 367 AALINFL-DKFD--DPEFSG-LIFVKQRVTVSVLARLLSLHPQTRDRFRCAAYVGMSVGS 422
Query: 502 ASK-----GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
+ + K Q+ ++ FR+G N+IV TS+ EEG+D+ +V+CFD +
Sbjct: 423 CRQDMVGDWHNAKKQRGTMDDFRSGRKNLIVTTSVLEEGIDVTACRVVVCFDKPANLKSF 482
Query: 557 IQRMGR 562
IQR GR
Sbjct: 483 IQRRGR 488
>gi|158706440|sp|P0C5H7.1|DCL2_EMENI RecName: Full=Dicer-like protein 2; Includes: RecName:
Full=Endoribonuclease dcl2; Includes: RecName:
Full=ATP-dependent helicase dcl2
Length = 1429
Score = 86.3 bits (212), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 116/486 (23%), Positives = 198/486 (40%), Gaps = 69/486 (14%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV-FAAPSRPLVMQQ 169
R YQ + + +L N +V + TG GKT IA + I + DGK++ F AP+ PL +QQ
Sbjct: 15 RSYQLEMFEASLKGNIIVVMGTGSGKTQIALLRIIHELE-NSDGKLIWFLAPTVPLCLQQ 73
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFW----KTKRVFFVTPQVLEKDIQSGTCLMK 225
+ + T+ + ++ + W + +V TP VL + G +
Sbjct: 74 HRVISQHIPAVKSRTLLGSDKVELWTEQAVWDAVLEGLQVIVSTPAVLHDAMTHGFVRIS 133
Query: 226 YLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-------RILALTATPGSKQQTIQHII 278
L L+ DEAH + +R +Q RIL LTA+ GS ++ +Q I
Sbjct: 134 RLGLLIFDEAHHCIRKHPTNMIMRNFYHPALQEYGPGAVPRILGLTASAGSSREGLQTIE 193
Query: 279 DNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIG 338
NL S Q++ Y H ++ + + ++ N +WE S +
Sbjct: 194 MNLN-SVCTTPQAHRQELLEYTHMPELRRV---LYTPLMKENASLWEG--------STLQ 241
Query: 339 LLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS-HG 397
L RD S G+++ + + ++ + ++ +
Sbjct: 242 KLLERDNTYCS------------------------GQMKTFVCKAVHIFQELGIWAAEYF 277
Query: 398 IRPAYEMLEEKLKQGSFARFMSKNEDIRK--VKLLMQQ---SISHGAQSPK---LSKMLE 449
IR + +EE L + + D R+ V +L + I + PK +S E
Sbjct: 278 IRAS---VEELLSHAYVHSKIDLDYDEREYLVNILSKSPVPDIDVHSTDPKDFPVSPKFE 334
Query: 450 VLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT---IGDLVKATEFIGQSSGKASKGQ 506
L+ + + + +IF R +V + L+T D + FIG S+ K
Sbjct: 335 ALISFLMSTEDINFSGLIFVEQRAAVTVMSYLLSTHPSTRDRFRTGSFIGMSNSTNRKTM 394
Query: 507 -----SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMG 561
S K+Q L+ FR G N+IVAT + +EG+D+ +VIC++ IQR G
Sbjct: 395 LGDLLSAKMQPDTLDDFRYGRKNLIVATDVLKEGIDVSACSVVICYNIPKGFESFIQRRG 454
Query: 562 RTGRKH 567
R R++
Sbjct: 455 RARRQN 460
>gi|296190081|ref|XP_002743043.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 [Callithrix
jacchus]
Length = 925
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 128/542 (23%), Positives = 237/542 (43%), Gaps = 84/542 (15%)
Query: 81 EGSSFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLI 139
E + E+ C + +E + T +Y P R YQ + A NT++ PTG GKTL+
Sbjct: 218 ECQNLSENSC---LPSEVSDTNLYSPFKP-RSYQLELALPAKKGKNTIICAPTGCGKTLV 273
Query: 140 AAVVIYNFFRWFPDG---KIVFAAPSRPLVMQQIEAC--------HNIVGIPQEWTIDMT 188
A ++ + + FP G K+VF A P+ QQ + + GI T
Sbjct: 274 ALLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERLGYRVTGIS-----GAT 328
Query: 189 GQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAYCTA 247
+ P K+ + + +TPQ+L ++++GT + ++ DE H + + Y
Sbjct: 329 AENVPVKQIV--ENNDIIILTPQILVNNLKNGTIPSLSIFTLMIFDECHNTSKQHPYNMI 386
Query: 248 IRELM-------SVPVQLRILALTATPG-----SKQQTIQHI------IDNLYIST---- 285
+ + S P+ +++ LTA+ G + + + +I +D I+T
Sbjct: 387 MFNYLDQKLGGSSGPLP-QVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVQDN 445
Query: 286 ---LEYRNESDQDVSSYVHNR---KIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGL 339
LE Q V +R K + I ++ +E + RI L +
Sbjct: 446 LKELEQVVYKPQKFFRKVESRISDKFKCIIAQLMRETEGLAKRI-------CKDLENLSQ 498
Query: 340 LQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY--HIRR-----L 392
+QNR++ T + + K + Q+ + E+ + LY H+R+ +
Sbjct: 499 IQNREFGTQKYEQWIVTVQK-----ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALI 553
Query: 393 LSSHG-IRPAYEMLEEKLKQGSFARFMSKNEDIRKV---KLLMQQSISH--GAQSPKLSK 446
+S H ++ A L++ A F +D+ + KL +SIS ++PKL
Sbjct: 554 ISEHARMKDALHYLKDFFSNVRAAGFDETEQDLTQRFEEKLQELESISRDPSNENPKLED 613
Query: 447 MLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASK 504
+ +L + + +P+ + I+F R V + N + L +K G+S +
Sbjct: 614 LCFILREEYHL-NPE-TITILFVKTRALVDALKNWIEGNSKLSFLKPGILTGRSKTNQNT 671
Query: 505 GQSQKVQQAVLEKFRA-GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
G + Q+ +L+ F+A G +N+++ATS+ +EG+DI + +LVI ++ + ++MIQ GR
Sbjct: 672 GMTLPAQKCILDSFKAHGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR- 730
Query: 564 GR 565
GR
Sbjct: 731 GR 732
>gi|302819693|ref|XP_002991516.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii]
gi|300140718|gb|EFJ07438.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii]
Length = 1719
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 121/515 (23%), Positives = 209/515 (40%), Gaps = 118/515 (22%)
Query: 113 YQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGK--IVFAAPSRPLVMQ 168
YQ + + AL N +V L TG GKT+IA ++I +F P K VF AP+ LV+Q
Sbjct: 359 YQKDVFQRALKENIIVNLGTGTGKTMIAIMLIQSFEERLSMPQEKRIAVFLAPTVNLVIQ 418
Query: 169 QIEACHNIVGIPQEWTIDMTGQISPTKRASFWK---------TKRVFFVTPQVLEKDIQS 219
Q A + +T+ G K W + +V +TPQV + +
Sbjct: 419 QARAI-------ESFTVLKVGDYYGDKGVDSWSVNQWQAEVDSHQVLVMTPQVFLNALGT 471
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV---QLRILALTATPGSKQQTIQH 276
++++ LV+DE H A N+ Y ++ V + +I +TA+P ++
Sbjct: 472 SALKLEFVEVLVMDECHHAHKNHPYALIMKTHYHVSCLKSKPKIFGMTASPVIQKGVSSS 531
Query: 277 IIDNLYISTLE-------YRNESDQDVSSYVHN-------------------RKIELIEV 310
N ++ LE Y E +V Y N ++E+++
Sbjct: 532 YDCNRKLTVLESILDAKVYTVEDKSEVEEYYPNPTQYKEYYDRPKQRFSSIQTELEILKD 591
Query: 311 EMGQEAV------EINNRIWEVI-RPYTS---RLSAIGLLQNRDYQTLSPVDLLNSRDKF 360
+ EA E+ N+I + I R + S L +GLL L V++L +R+K
Sbjct: 592 RLNSEAACNCSDYELQNKIKKSIDRLHLSINHCLVDLGLL-----PALLAVEILQNRNK- 645
Query: 361 RQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK 420
+ +H + +P + EE++K RF+
Sbjct: 646 ------------------------STFHSK-------WKPDVSLEEEEVKTSLKERFLQN 674
Query: 421 NEDIRKVKLLMQQS------ISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS 474
I + + +S ++ G SPK+ +L+VL + + + R I+F
Sbjct: 675 VSSIPRFSQVSSRSYPTLEEMTSGTLSPKVLVLLDVLE---RLRGITNMRCIVF------ 725
Query: 475 VRDIMNALATIGDLVKATEFIGQ------SSGKASKGQSQKVQQAVLEKFRAGGYNVIVA 528
V ++ A+A + L+ F+ + + + ++ QQ VL+ F G N+++A
Sbjct: 726 VERVIVAMA-LAKLISRLSFLSHLRCDYMTGVRDTDARNPTQQQEVLDAFAGGKLNLLIA 784
Query: 529 TSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
TS+ EEGLD+ VI FD + +Q GR
Sbjct: 785 TSVAEEGLDVQACCAVIRFDVCQTLRSHVQSRGRA 819
>gi|405969612|gb|EKC34573.1| Putative ATP-dependent RNA helicase DDX58 [Crassostrea gigas]
Length = 902
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 125/547 (22%), Positives = 228/547 (41%), Gaps = 107/547 (19%)
Query: 97 EAAKTWIYPVNVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGK 155
EA + +P + +R+YQ + + AL NT++ TG GKT +A + D
Sbjct: 208 EATEKETFP-TLTMRNYQLELAEIALSGRNTIICAETGTGKTYVALYLTQQHLASKNDAC 266
Query: 156 IVFAAPSRPLVMQQIEAC------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
+VF A + LV QQ E + + + + T M +++ K + +V F+T
Sbjct: 267 VVFLARTNALVEQQYEKFSRFLYKYKVYHLKTDKTAAMGRKLAMAK-----ENHQVLFMT 321
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM---------SVPVQLRI 260
PQ+L +I S ++ + L++DE H Y +++ + S+P ++
Sbjct: 322 PQILLNNINSKQISLQEVSLLILDECHHTRKREPYNNVMKQYLHLKRDSKKTSLP---QV 378
Query: 261 LALTATPGSKQQT-----IQHI------IDNLYISTLEYRN----------ESDQDVSSY 299
L LTAT G + + + HI +D L IS ++ E ++D+
Sbjct: 379 LGLTATIGVGKSSTLDGAVSHILSVCASLDVLDISMVKNNKEELEKTKKLMEKEKDLPKQ 438
Query: 300 VHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRD---YQTLSPVDLLNS 356
+ K+ELIE + + EV+ + + RD YQ + + L N
Sbjct: 439 IILEKMELIEKYVAKT---------EVVNQPKLKKQWDKKPKKRDGKQYQKWT-IHLRNR 488
Query: 357 RDKFRQAPPPNLPQIK--FGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSF 414
+ P L Q+ + Y AL Y + S+H E L++KL
Sbjct: 489 VICKLKTEPTLLRQLHAALTHLSTYNEALAVNYLMN---STH----VAEFLKQKLA---- 537
Query: 415 ARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS 474
+DI++ K+++++ S KL + E + K R +I + + +
Sbjct: 538 -------DDIKQHKVILKEKASFNDAEDKLLRYHEEVCQQLKL-----LRDVINDHLK-T 584
Query: 475 VRDIMNALAT-IGDLVKATEFI--------------------GQSSGKASKGQSQKVQQA 513
+RDI+ L T +GD VK F+ G + + ++ +
Sbjct: 585 LRDILVELRTDLGDDVKGMIFVETRATAFALAKYITEELKMMGYRAAPFTGSMLEEEKTD 644
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPH 573
L+K+R G N++VATS+G EG+D+ + + +I ++ + ++Q GR R+ + H
Sbjct: 645 TLKKYRKGEINLLVATSVGSEGIDVPDSNFIITYNYTGNEADIMQMSGR-ARRQGSTVTH 703
Query: 574 IFKPEVQ 580
I +Q
Sbjct: 704 ISDQTIQ 710
>gi|302800610|ref|XP_002982062.1| hypothetical protein SELMODRAFT_421514 [Selaginella moellendorffii]
gi|300150078|gb|EFJ16730.1| hypothetical protein SELMODRAFT_421514 [Selaginella moellendorffii]
Length = 497
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 120/462 (25%), Positives = 194/462 (41%), Gaps = 64/462 (13%)
Query: 125 NTLVALPTGLGKTLIAAVVIY---NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQ 181
NT+V L TG GKT+IA ++I + FR G VF AP+ L QQ E +
Sbjct: 2 NTIVCLETGCGKTMIAVLLIRSLSHLFRKPEKGICVFLAPTVSLCEQQAEVIERYTDLYV 61
Query: 182 EWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN 241
+ T + + + + VF +TP +L +++ ++ L+ DE H
Sbjct: 62 GTYVGGTSTMDVHWWTTHLQKQEVFVMTPAILLDNLRHRFFNPDHVELLIFDECHHCAKG 121
Query: 242 YAYCTAIRELMSVPVQL--RILALTATP-------GSKQQTIQHIIDNLYISTLEYR--N 290
+ Y + E P RIL +TA+P S Q + D L + L +
Sbjct: 122 HPYANIMSEFYHKPEAKCPRILGMTASPIVGKGKTWSGPQAFKESFDCLE-TMLRSKIIT 180
Query: 291 ESDQDVSSYVHNRKIELIE----VEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQ 346
+D++++S++ + +++ E + +I+NR + R + RL N+ Y
Sbjct: 181 FADKELTSFLPSSDMKIKEHLPDTKGKHRTTDIDNRFENLTREF--RLPEERQAVNKIYN 238
Query: 347 TLSPVDLLNSRDKFRQAPPPNLPQI--KFGEVEAYFGALITLYHIRRLLSSHGIRPAYEM 404
TL+ R+A L K + EA F +RR+L+ +
Sbjct: 239 TLNYCLFELGLFSARKAAEIMLAGCDGKGRDAEAAF--------LRRVLN---------I 281
Query: 405 LEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSR 464
LEEK A ++ IR + S K+ +L+VL ++ K + R
Sbjct: 282 LEEKAILDGTA-----DDQIRAI-------------SSKVQLLLDVLDEY---KSAQDLR 320
Query: 465 VIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN 524
I+F R ++ L V+A + + K KG + Q+ LE FRAG N
Sbjct: 321 CIVFVE-RVIAAKVLTLLLNSRPYVRA-QCVASHRNKL-KGLTLATQRNSLEDFRAGKAN 377
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
VIVAT++ EEGLDI LVI F+ + IQ GR ++
Sbjct: 378 VIVATNVAEEGLDIQSCSLVIRFNMPKTERSSIQSRGRARKQ 419
>gi|291383111|ref|XP_002708086.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I
[Oryctolagus cuniculus]
Length = 926
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 115/510 (22%), Positives = 222/510 (43%), Gaps = 76/510 (14%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R+YQ + A+ NT++ PTG GKT ++ ++ + + FP G K+VF A P+
Sbjct: 245 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKTFPQGQKGKVVFFANHVPVY 304
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ +++ GI T + P ++ + + +TPQ+L +++
Sbjct: 305 EQQKSVFSEYFERLGYSVAGIA-----GATVENVPVQQIV--ENNDIIVLTPQILVNNLK 357
Query: 219 SGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATPG-- 268
GT + ++ DE H + Y + + S P+ +++ +TA+ G
Sbjct: 358 DGTIPSLSVFTLMIFDECHNTCKQHPYNKIMFYYLDQKLGGSSDPLP-QVVGMTASVGVG 416
Query: 269 ---SKQQTIQHI------IDNLYISTLEYRNE-------SDQDVSSYVHNRKIELIEVEM 312
+ + +++I +D I+T++ E + Q +S V +R + +
Sbjct: 417 DAKNTDEAVEYICKLCASLDASVIATVKENLEELQEIVYTPQKISRRVESRTTNGFKRII 476
Query: 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVD-LLNSRDKFRQAPPPNLPQI 371
Q E + +V L + +QNR++ T ++ R P+ +
Sbjct: 477 SQLMRETESLAKDVFE----ELENLSQIQNREFGTQKYEQWIVEVHKACRTFQLPDKDE- 531
Query: 372 KFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLEEKLKQGSFARFMSKNED 423
E+ + LY H+R+ ++S H ++ A L K A F +D
Sbjct: 532 -----ESRICKALYLYTSHLRKYNDALIISEHAQMKDALNYLNNFFKDVRAAGFDETEQD 586
Query: 424 IR-----KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDI 478
+ KV+ L S+ ++PKL + +L + + +P+ ++ I+F R V I
Sbjct: 587 LTRRFEGKVQELETVSMDPSNENPKLKDLYLILQEEYHV-NPE-TKTILFVKTRALVDAI 644
Query: 479 MNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIVATSIGEEG 535
+ L +K G+ + G + Q+ VL+ FR+ G +N+++ATS+ +EG
Sbjct: 645 KKWIEENSKLSFLKPGILTGRGKTSQTTGMTLPAQKCVLDAFRSNGDHNILIATSVADEG 704
Query: 536 LDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 705 IDIAQCNLVILYEYVGNVIKMIQTRGR-GR 733
>gi|324501737|gb|ADY40770.1| ATP-dependent RNA helicase DDX58 [Ascaris suum]
Length = 1050
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 131/521 (25%), Positives = 220/521 (42%), Gaps = 67/521 (12%)
Query: 105 PVNVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDG----KIVFA 159
P + +R YQ + + A NT++ PTG GKT++A +I N + D ++
Sbjct: 301 PEPIELRPYQEELVEAACRGVNTIICAPTGSGKTIVATYIIRNHLQEKKDAGETARVAML 360
Query: 160 APSRPLVMQQIEACHNIVGIPQEWTIDMTG--QISPTKRASFWKTKRVFFVTPQV---LE 214
P+ PLV QQ A + + W ++G ++ RA F V TPQ+ L
Sbjct: 361 VPTVPLVEQQSLALNRYLR-KVFWVEGLSGSERVDEDGRAPFVLASHVTIFTPQIFINLL 419
Query: 215 KDIQSGTCL-MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-RILALTATP--GSK 270
+ I+ G L LV DE H G++ Y +R L + +++ LTA+ GS
Sbjct: 420 RSIRKGDRLYFNDFTMLVFDECHHCDGDHPYHVLMRMLHDYNGKKPQVVGLTASLPLGSG 479
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330
+ ++ +D++ + S V ++ N + + + + RP
Sbjct: 480 RANVEAALDHMMDLCAKLSAYSISTVRKHLRN---------LQEHVTPPIDEVRNARRP- 529
Query: 331 TSRLSAIGLLQN--RDYQTLSPVDLLNSRDKFRQAPPP-NLPQIKFGEVEAYFGAL---I 384
R I +QN +T +L + R + P N P E++ GAL I
Sbjct: 530 -QRNMFILAVQNCMTKIETHMRRELEDLRKTLQLRPDEVNFPPHTENRYESFIGALKSRI 588
Query: 385 T------------------LYHIRRLLSSHGIRP---AYEMLEEKLKQ---GSFARFMSK 420
T L + R L+ + P AY+ L K++ + AR S
Sbjct: 589 TTDMPGGSVKYQLIKMLDHLGYYYRALTLSDVLPDKFAYDYLANKIRNEATANDARAASI 648
Query: 421 NEDIRK-----VKLL-MQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS 474
+++++ VKL + S +S ++ ++L ++ K+P SR IIF R
Sbjct: 649 QKELKRLFEAYVKLSELHLSDDDNGESKEIIRLLHNILLKQYEKEPS-SRTIIFVTTRML 707
Query: 475 VRDI---MNALATIGDLVKATEFIGQSSGKASK-GQSQKVQQAVLEKFRAGGYNVIVATS 530
+ +N I +A F+ S+ +S GQ+ Q+ ++E F G V+VATS
Sbjct: 708 AEKLSEHLNECRIIDGGPRAIGFVTSSNQSSSFSGQTAAEQRLMIEDFNTGLRKVLVATS 767
Query: 531 IGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ EEGLDI +L+I ++ S +IQR GR K+ I
Sbjct: 768 VAEEGLDISACNLIIKYNNTGSERSLIQRRGRARAKNSRSI 808
>gi|432110823|gb|ELK34300.1| Putative ATP-dependent RNA helicase DDX58 [Myotis davidii]
Length = 883
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 121/513 (23%), Positives = 221/513 (43%), Gaps = 77/513 (15%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLV 166
R+YQ + + AL NT++ PTG GKT +A ++ + + FP GKIVF A P+
Sbjct: 197 RNYQLELARPALEGKNTIICAPTGCGKTFVALLICEHHLQKFPPGQKGKIVFFANQLPVY 256
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ + I GI + + + +TPQ+L ++
Sbjct: 257 EQQKSVILKYFERHGYKIAGIS-------GATVENISVEQIVENNDIIILTPQILVNSLK 309
Query: 219 SGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATPG-- 268
+GT + ++ DE H + + Y + + S P+ +++ LTA+ G
Sbjct: 310 NGTIPSLSVFTLMIFDECHNTSKLHPYNVIMFHYLDQKLGGSSDPLP-QVIGLTASVGVG 368
Query: 269 ---SKQQTIQHI------IDNLYISTLEYRNESDQ-----------DVSSYVHNRKIELI 308
+ + ++I +D ++T++ E + V S NR + I
Sbjct: 369 DAKNTTEATEYICKLCASLDTSVVATVKDNLEELEGIIYKPQKFFRKVKSRTTNR-FKCI 427
Query: 309 EVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNL 368
E+ +E + I+ + T L + +QNR++ T + + K + +L
Sbjct: 428 ISELMKETESLAKSIFGELG--TISLENLSQIQNRNFGTQKYEQWIVAVQK--KCAVLHL 483
Query: 369 PQIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLEEKLKQGSFARFMSK 420
P E E+ + LY H+R+ L++ H + A + L++ A F
Sbjct: 484 PD---KEKESRICTALFLYTSHLRKFNDALLINEHARTKDALDYLKDFFSNVRSAGFDEI 540
Query: 421 NEDI-----RKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
+D+ K++ L S+ ++PKL + +L + + +P+ +R I+F R V
Sbjct: 541 EQDLTRRFEEKLQELESISMDPSNENPKLKDLCFILQEEYHL-NPE-TRTILFVKTRALV 598
Query: 476 RDIMNALATIGDLVKATEFIGQSSGKASK--GQSQKVQQAVLEKFRAGG-YNVIVATSIG 532
+ + L I GK S+ G + Q+ VL+ FRA G +++ATS+
Sbjct: 599 DALKKWIEENSKLSFLKPDILTGRGKTSQNIGMTLPAQKCVLDAFRASGDKKILIATSVA 658
Query: 533 EEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
+EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 659 DEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 690
>gi|357167959|ref|XP_003581414.1| PREDICTED: endoribonuclease Dicer homolog 4-like [Brachypodium
distachyon]
Length = 1627
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 118/491 (24%), Positives = 197/491 (40%), Gaps = 68/491 (13%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY---NFFRWFPDGKIVFAAPSRPLVM 167
R YQ + K A+ N +V L TG GKT IA ++IY + R +F AP+ PLV
Sbjct: 22 RKYQLDLCKRAVEENIVVYLGTGCGKTHIAVLLIYELGHLIRKPSSDVCIFLAPTIPLVR 81
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFW----KTKRVFFVTPQVLEKDIQSGTCL 223
QQ N + G ++ W + V +TPQ+L +++
Sbjct: 82 QQAAVISNSTNFKVQ---SYYGNGKSSRDHQDWEKEMRESEVLVMTPQILLYNLRHCFIR 138
Query: 224 MKYLVCLVIDEAHRATGN--YAYCTAIRELM-SVPVQ-LRILALTATP-----GSKQQTI 274
M + L+ DE H A + + Y ++E S V+ R+ +TA+P GS +
Sbjct: 139 MSSIALLIFDECHHAQAHKRHPYAQIMKEFYDSNAVKPPRVFGMTASPVMGKGGSNKLNY 198
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL 334
I++L +H + + VE+ + ++ S L
Sbjct: 199 TKCINSL---------------EELLHAKVCSVDNVELESVIAFPDMEVYPYGPVSHSNL 243
Query: 335 SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLS 394
+ + + D + S + S F+ + Q K + G LI + ++ L S
Sbjct: 244 TVTYIKELDDLKLQSECIVRESLYDFKDS------QKKLKSLWRLHGNLI--FCLQELGS 295
Query: 395 SHGIRPAYEML---------EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGA------ 439
++ A +L +E G+ RFM + + K ++ +I G
Sbjct: 296 FGALQAARNLLSFDVDAFDKKEVDINGNSTRFM--HHYLNKAVSVLSCNILDGTHDDSFD 353
Query: 440 ----QSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIG--DLVKAT 492
+ P S VL++ + + ++ + IIF R I + + + D K
Sbjct: 354 LEMLEEPLFSNKFAVLINVLSRYRLEENMKCIIFVKRIAVARAISHIIRNLKCLDFWKCE 413
Query: 493 EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
+G SG K S+ ++EKF +G N++VATS+GEEGLDI LV+ FD +
Sbjct: 414 FLVGCHSG--LKNMSRNKMDDIVEKFSSGEVNLLVATSVGEEGLDIQTCCLVVRFDLPET 471
Query: 553 PLRMIQRMGRT 563
IQ GR
Sbjct: 472 VASFIQSRGRA 482
>gi|301106324|ref|XP_002902245.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
gi|262098865|gb|EEY56917.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
Length = 2680
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 110 VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ 169
+R YQ +T +AL NT+V LPTG GKTL+A V+ P+ +VF P+ PLV QQ
Sbjct: 198 LRRYQVELTISALLENTIVYLPTGCGKTLVAIKVLDEMKHLNPNKLVVFFVPTGPLVSQQ 257
Query: 170 IEACHNIVGIPQEWTI-DMTGQISPTKRA-----SFWKTKRVFFVTPQ-VLEKDIQSGTC 222
++ + +M+GQ T A + VTPQ L T
Sbjct: 258 AAYIRR----ESDFRVKEMSGQHGRTGAATSDPITVDGDVDALAVTPQYFLNLLFNDRTK 313
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR--ILALTATP---GSKQQTIQHI 277
+ Y V +V DEAH ATGN+ YC +++L ++ ++ R ILALTA+P G ++ + Q
Sbjct: 314 ITDYSV-MVFDEAHHATGNHPYCELLKKLATIDLRTRPHILALTASPFGEGVRETSGQTA 372
Query: 278 IDNL 281
++NL
Sbjct: 373 LNNL 376
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 462 HSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
+SR I+F R + + A+ + L + T F+G +S + + + Q+ L++FR
Sbjct: 589 NSRAIVFVRRRKTAILLAKAMEALDVLRELNPTRFVGHNSYEGMSWEEE--QRPTLDRFR 646
Query: 520 AGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
G ++VAT++ EEGLD+ E LVI FD + +IQ GR
Sbjct: 647 QGRIRLLVATNVLEEGLDVPECSLVIQFDGVIGVTSLIQSRGR 689
>gi|66802840|ref|XP_635263.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60463423|gb|EAL61608.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2403
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 121/514 (23%), Positives = 215/514 (41%), Gaps = 72/514 (14%)
Query: 106 VNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW------FPDGKIV-- 157
V + RDYQ + NTL+ LPTG+GKTL++ + + F D K +
Sbjct: 269 VEIIPRDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQDNSCGDSKRIAL 328
Query: 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR----VFFVTPQVL 213
F PLV QQ A I + + G+I+ ++ +F ++K V V V
Sbjct: 329 FLVDRVPLVTQQAGAIEAITNLK---VCKLYGEINDSRTRAFVRSKEYDVLVSTVGSLVN 385
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR--ILALTATPGSKQ 271
+++ L Y + DE H ATG + + + + + R IL LTA+ S
Sbjct: 386 LLEVRHLNILDFYFITF--DEVHHATGEHDFNKVVDYIRKTDLNFRPRILGLTASLVS-- 441
Query: 272 QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKI----------------ELIEVEM-GQ 314
I N ST++ S +D+ + +R EL+ + GQ
Sbjct: 442 ------IGN---STIDIVQRSIKDMEERMLSRVFKPTSLLTNSTQSELQPELVSFKTSGQ 492
Query: 315 EAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTL----SPVDLLNSRDKFRQAPPPNLPQ 370
E++ I I E + + L + D + S + L DK+ + Q
Sbjct: 493 ESL-IETSICEFLVSNSKELQIFLNYSDVDLDGVRGNPSFLKALERLDKYSK-------Q 544
Query: 371 IKFGEVEAYFGALITLYHIRRLLSSHG---IRPAYEMLEEKLKQGS--FARFMSKNEDIR 425
++ +E Y LI LY + +LS+ G + ++L + Q + + + + I
Sbjct: 545 LESIYIE-YTKVLIKLYELLSVLSTEGPKQVLTGLDLLMQSTNQENELYNKLLELRYYIS 603
Query: 426 KVKLLMQQSISHGA-QSPKLSKMLEVLV-DHFKTKDPKHSRVIIFSNFRGSVRDIMNALA 483
+ + G+ + KL LE + D + K R+++F R ++ + L
Sbjct: 604 GQYEDRESNFEKGSTRYRKLISSLEYAISDASDGELQKDLRILVFVETRSGASNLTSMLK 663
Query: 484 T--IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
+ + +G + G + QQ+++ KFR G +IV T++ EEG+D+ +
Sbjct: 664 KEPFQEYLHTKRLVGHN---GDDGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEGIDVQDC 720
Query: 542 DLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
++VIC+D +S +IQR GR K++ + I+
Sbjct: 721 NIVICYDGILSLKSLIQRRGRARSKNESKFIIIY 754
>gi|345571082|gb|EGX53897.1| hypothetical protein AOL_s00004g556 [Arthrobotrys oligospora ATCC
24927]
Length = 1587
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 119/499 (23%), Positives = 196/499 (39%), Gaps = 93/499 (18%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKI------------VF 158
R+YQ + + A NT+ L TG GKTLIA ++I RW + ++ VF
Sbjct: 163 REYQLELFERAKMDNTIAVLDTGSGKTLIATLLI----RWMLELELEERKSGRSPKVCVF 218
Query: 159 AAPSRPLVMQQIEACH-NIVGIPQEWTIDM-TGQISPTKRASFWKTKRVFFVTPQVLEKD 216
S LV QQ N+ ++ DM T + ++ + K+ R+ T +L
Sbjct: 219 LVNSVTLVFQQAAVLECNLDAQVGKYCGDMGTDLWTKSQWDARLKSDRIIVATADILWNC 278
Query: 217 IQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL---RILALTATPGSKQ-- 271
+ M + L+ DE H +AY +R+ + RI +TA+P +
Sbjct: 279 LTHSFIRMSDICLLIFDECHHTKKQHAYARIMRDFYETEKEENRPRIFGMTASPVDARVD 338
Query: 272 -QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQE--------AVEINNR 322
H ++ L S + S+ + RK EM E E+N++
Sbjct: 339 PVKAAHQLERLMHSRI-------CTTSNPAYMRKFLPRPEEMTLEYQGVPTPVITELNSK 391
Query: 323 IWEVIRPY--TSRLSAI-GLLQNRDYQTLSP----------VDLLNSRDKFRQAPPPNLP 369
+ PY T LS+I G + N + L P + L S + R+A +
Sbjct: 392 ----LSPYRNTKCLSSIFGFIDNVASRDLGPWCSDFIWQVTLTELESARQERRAGTNSAS 447
Query: 370 QIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKL 429
+ G F I+ + + I A+E E L GSF
Sbjct: 448 NQREGSA---FNLEDVDKEIQLIKEARAIVEAHEFQEPSLGSGSF--------------- 489
Query: 430 LMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI---- 485
SPKL +L LV F + P++ + IIF R + + I +
Sbjct: 490 -----------SPKLFILLRFLVHAFD-QHPEY-KCIIFVTRRHTAQCIQAIFKKVFIQH 536
Query: 486 --GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
L++ +G S + + + Q L +F+ G N ++AT++ EEGLD+ + +L
Sbjct: 537 GRDHLIRLGTLVGSSGQHGTDSMTFRAQTLALHRFKKGVTNCLIATAVAEEGLDVPDCNL 596
Query: 544 VICFDANVSPLRMIQRMGR 562
VI FD + ++ +Q GR
Sbjct: 597 VIRFDLYDTMIKYVQSRGR 615
>gi|449491219|ref|XP_004174726.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DHX58 [Taeniopygia guttata]
Length = 674
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 124/504 (24%), Positives = 216/504 (42%), Gaps = 84/504 (16%)
Query: 108 VPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLV 166
+ +R+YQ AL N++V LPTG GKT +A V + K+ LV
Sbjct: 1 MELREYQREAAAPALRGRNSIVWLPTGAGKTRVAVHVCRRHLQSRRGAKVAVLVNKVHLV 60
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKD---IQSGTCL 223
Q E + + +++P K + KT FF ++EK I S L
Sbjct: 61 DQHTE--------KEFHALQDAFKVTPIKDDTSHKT---FF--ADLVEKSDVVICSAQIL 107
Query: 224 MKYLV--------------CLVIDEAHRATGNYAYCTAI-----RELMSVPVQLRILALT 264
LV LVIDE H + Y + R+L ++L LT
Sbjct: 108 QNALVSTEEDVHVELTDFSLLVIDECHHTHKDAVYNKIMLRYLQRKLSGEQDLPQVLGLT 167
Query: 265 ATPGSKQQT-----IQHIID---NLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316
A+PG+ T ++HI+ NL + + Q + S+V K + ++ QE
Sbjct: 168 ASPGTGGATSFEGAVEHILQICANLDTEKITSVQDEFQHLQSHVPQPKKQY---DLCQER 224
Query: 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEV 376
V+ P+ +L + L R Q + D L RD Q + +++
Sbjct: 225 VQ---------DPFGEQLKKVML---RIQQFMEKPDFL--RDFGTQIYEQRIVELEKRAA 270
Query: 377 EAYF-GALITLYHIRR----LLSSHGIR--PAYEMLE-----EKLKQGSFARFMSKNEDI 424
E + + H+R+ LL + +R A++ L+ E+ K +F++ +
Sbjct: 271 EMFCRKTRVCALHLRKYNDALLINDTVRMVDAFQCLQQFYSAERDKNDPTEQFLTATFEE 330
Query: 425 RKVKLLMQQSIS--HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL 482
+ L Q+++ H ++P+L+K+ +L +HF+ SR I+F+ R S +++ L
Sbjct: 331 NRANL---QALAGDHRYENPRLAKLEGILREHFQPLGT--SRGIVFTKTRQSAYSLLSWL 385
Query: 483 ATIGDL----VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDI 538
T L ++A G ++ +Q QQ V+++FR G N++ +TS+ EEGLDI
Sbjct: 386 QTTATLRGQHIRAAVLTGAGYSNQTRHMTQNEQQDVIKQFRQGALNLLFSTSVAEEGLDI 445
Query: 539 MEVDLVICFDANVSPLRMIQRMGR 562
E ++V+ + + + M+Q GR
Sbjct: 446 PECNIVVRYGLMTNEIAMMQARGR 469
>gi|194224905|ref|XP_001497895.2| PREDICTED: probable ATP-dependent RNA helicase DDX58 [Equus
caballus]
Length = 920
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 116/511 (22%), Positives = 223/511 (43%), Gaps = 72/511 (14%)
Query: 108 VPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSR 163
+ +R+YQ + A NT++ PTG GKTL++ ++ + + FP G K+VF A
Sbjct: 236 LKIRNYQLELALPAKEGKNTIICAPTGCGKTLVSLLICEHHLKKFPQGRKGKVVFFAIHL 295
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRA-SFWKTKRVFFVTPQVLEKDIQSGTC 222
PL QQ ++G S + + +TPQ+L ++ GT
Sbjct: 296 PLYEQQKSVFSQYFERRGYKVAGISGATSENVVVDQIVENNDIIILTPQILVNSLKDGTI 355
Query: 223 -LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATPG-----S 269
+ ++ DE H + ++ Y + + S P+ +++ LTA+ G +
Sbjct: 356 PSLSVFTLMMFDECHNTSKHHPYNMIMFNYLDQKLGGSSDPLP-QVVGLTASVGVGDAKN 414
Query: 270 KQQTIQHI------IDNLYISTLEYRNESDQDVSSYVHN-----RKIE--------LIEV 310
+ + ++HI +D IST++ ++ Q+++ V+ RK+E I
Sbjct: 415 RDEAMEHICKLCASLDASVISTVK---DNLQELTEVVYKPEKNFRKVESRTTDGFKCIIS 471
Query: 311 EMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ 370
++ +E + I++ L + QNRD+ T + + K + Q
Sbjct: 472 QLMRETESLAKSIFD-------ELENLSRFQNRDFGTQKYEQWIIAVQK-----ACIVFQ 519
Query: 371 IKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLEEKLKQGSFARFMSKNE 422
+ E+ + LY H+R+ ++S H ++ A + L++ A F +
Sbjct: 520 LPDKAEESRICKALYLYTSHLRKYNDALIISEHARMKDALDYLKDFFNNVRAAGFDETEQ 579
Query: 423 DI-----RKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRD 477
D+ K+ L S+ ++PKL + +L + + +P+ +R I+F R V
Sbjct: 580 DLTRRFEEKLPELESVSMDPSNENPKLKDLCFILQEEYHL-NPE-TRTILFVKTRALVDA 637
Query: 478 IMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN-VIVATSIGEE 534
+ + L +K G+ + G + Q+ L+ FR G N +++ATS+ +E
Sbjct: 638 LKKWIEENPKLSFLKPGILTGRGKTTNNTGMTLPAQKCALDAFRTNGDNKILIATSVADE 697
Query: 535 GLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
G+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 698 GIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 727
>gi|449267492|gb|EMC78435.1| putative ATP-dependent RNA helicase DHX58 [Columba livia]
Length = 674
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 115/492 (23%), Positives = 209/492 (42%), Gaps = 60/492 (12%)
Query: 108 VPVRDYQF-AITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLV 166
+ +R YQ A+T N++V LPTG GKT A V G++ LV
Sbjct: 1 MELRGYQREAVTPALRGHNSIVWLPTGAGKTRAAVYVCRQHLESRRGGRVAVLVNKVHLV 60
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT----C 222
Q + N++ T + + AS K + T Q+L+ + SG
Sbjct: 61 EQHAKKEFNVLQKDFRVTAISGDRSEKSFFASVVKQSDIVICTAQILQNALVSGEEDTHV 120
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAI-----RELMSVPVQLRILALTATPGSKQQT---- 273
+ LVIDE H Y + R+L ++L LTA+PG+ T
Sbjct: 121 ELTDFSLLVIDECHHTHKEAVYNKIMLSYLQRKLCGQQDLPQVLGLTASPGTGGATSFEG 180
Query: 274 -IQHIID---NLYISTLEYRNESDQDVSSYV-HNRKIELIEVEMGQEAVEINNRIWEVIR 328
++HI+ NL + E + + +V RK + ++ QE +
Sbjct: 181 AVEHILQICANLDTEKITSAQEEVEQLQIHVPQPRK----QYDLCQERAQ---------D 227
Query: 329 PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYF-GALITLY 387
P+ RL + + Q + Y + + RD Q + +++ E + +
Sbjct: 228 PFGERLKKV-MAQIQQYMEMPTL----PRDFGTQIYEQRIVEVEKRAAETFCRKTRVCAL 282
Query: 388 HIRR----LLSSHGIR--PAYEMLE-----EKLKQGSFARFMSKNEDIRKVKLLMQQSIS 436
H+R+ LL + +R A++ L+ E+ + +F++ + + L Q+ +
Sbjct: 283 HLRKYNDALLINDTVRMIDAFQCLQQFYATERDTKDPTEQFLAATFEENRTSL---QAFA 339
Query: 437 HGA--QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL----ATIGDLVK 490
++P+L K+ ++L +HF+ SR I+F+ R S +++ L A G+ ++
Sbjct: 340 RDQRYENPRLGKLEQILQEHFQPHGT--SRGIVFTKTRQSAHSLLSWLQDTAALRGEHIR 397
Query: 491 ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
A G ++ +Q QQ V++ FR G N++ +TS+ EEGLDI E ++V+ +
Sbjct: 398 AAVLTGAGYSNQTRHMTQNEQQDVIKLFREGALNLLFSTSVAEEGLDIPECNIVVRYGLM 457
Query: 551 VSPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 458 TNEIAMVQARGR 469
>gi|168001535|ref|XP_001753470.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695349|gb|EDQ81693.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 881
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 574 IFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIFK-EKLTAAETDLIAKYFHPTSDSTWR 632
+ KP+V+ E+ IEQYV RGK K + P + ++LT E L+ KY P WR
Sbjct: 1 MVKPQVEMTEMKIEQYVPRGKN-KSVEGVAVPDSEGDELTEEEQALLRKYALPPGAEPWR 59
Query: 633 PSLIAFPHFQALPSRVHKVMHSFRT-GMLIDMMQHLQGLTF 672
PSLIAFP +Q LP+ VH V HS RT M ID+++ LQ F
Sbjct: 60 PSLIAFPKYQLLPTPVHAVKHSTRTVSMFIDVLRSLQEPGF 100
>gi|397520027|ref|XP_003830149.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 isoform 2 [Pan
paniscus]
Length = 854
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 118/527 (22%), Positives = 235/527 (44%), Gaps = 81/527 (15%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
+E + T +Y P R+YQ + A+ NT++ PTG GKT ++ ++ + + FP G
Sbjct: 159 SEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 217
Query: 155 ---KIVFAAPSRPLVMQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTK 203
K+VF A P+ QQ + + GI T + P ++ +
Sbjct: 218 QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS-----GATAENVPVEQIV--ENN 270
Query: 204 RVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVP 255
+ +TPQ+L +++ GT + ++ DE H + + Y + + S P
Sbjct: 271 DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGP 330
Query: 256 VQLRILALTATPG-----SKQQTIQHI------IDNLYISTLEYRNESDQDVS------- 297
+ +++ LTA+ G + + + +I +D I+T+++ E + V
Sbjct: 331 LP-QVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFF 389
Query: 298 SYVHNR---KIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLL 354
V +R K + I ++ ++ + RI L + +QNR++ T +
Sbjct: 390 RKVESRISDKFKYIIAQLMRDTESLAKRI-------CKDLENLSQIQNREFGTQKYEQWI 442
Query: 355 NSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLE 406
+ K + Q+ + E+ + LY H+R+ ++S H ++ A + L+
Sbjct: 443 VTVQK-----ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLK 497
Query: 407 EKLKQGSFARFMSKNEDIRKV---KLLMQQSISH--GAQSPKLSKMLEVLVDHFKTKDPK 461
+ A F +D+ + KL +S+S ++PKL + +L + + +P+
Sbjct: 498 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL-NPE 556
Query: 462 HSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
+ I+F R V + N + L +K + G+ + G + Q+ +L+ F+
Sbjct: 557 -TITILFVKTRALVDALKNWIEGNPKLSFLKPSILTGRGKTNQNTGMTLPAQKCILDAFK 615
Query: 520 AGG-YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
A G +N+++ATS+ +EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 616 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 661
>gi|397520025|ref|XP_003830148.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 isoform 1 [Pan
paniscus]
Length = 925
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 118/527 (22%), Positives = 235/527 (44%), Gaps = 81/527 (15%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
+E + T +Y P R+YQ + A+ NT++ PTG GKT ++ ++ + + FP G
Sbjct: 230 SEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 288
Query: 155 ---KIVFAAPSRPLVMQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTK 203
K+VF A P+ QQ + + GI T + P ++ +
Sbjct: 289 QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS-----GATAENVPVEQIV--ENN 341
Query: 204 RVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVP 255
+ +TPQ+L +++ GT + ++ DE H + + Y + + S P
Sbjct: 342 DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGP 401
Query: 256 VQLRILALTATPG-----SKQQTIQHI------IDNLYISTLEYRNESDQDVS------- 297
+ +++ LTA+ G + + + +I +D I+T+++ E + V
Sbjct: 402 LP-QVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFF 460
Query: 298 SYVHNR---KIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLL 354
V +R K + I ++ ++ + RI L + +QNR++ T +
Sbjct: 461 RKVESRISDKFKYIIAQLMRDTESLAKRI-------CKDLENLSQIQNREFGTQKYEQWI 513
Query: 355 NSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLE 406
+ K + Q+ + E+ + LY H+R+ ++S H ++ A + L+
Sbjct: 514 VTVQK-----ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLK 568
Query: 407 EKLKQGSFARFMSKNEDIRKV---KLLMQQSISH--GAQSPKLSKMLEVLVDHFKTKDPK 461
+ A F +D+ + KL +S+S ++PKL + +L + + +P+
Sbjct: 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL-NPE 627
Query: 462 HSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
+ I+F R V + N + L +K + G+ + G + Q+ +L+ F+
Sbjct: 628 -TITILFVKTRALVDALKNWIEGNPKLSFLKPSILTGRGKTNQNTGMTLPAQKCILDAFK 686
Query: 520 AGG-YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
A G +N+++ATS+ +EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
>gi|334322694|ref|XP_001366879.2| PREDICTED: probable ATP-dependent RNA helicase DHX58 [Monodelphis
domestica]
Length = 679
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 124/493 (25%), Positives = 210/493 (42%), Gaps = 69/493 (13%)
Query: 113 YQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIE 171
YQ+ + AL N ++ LPTG GKT AA V K+ LV Q +
Sbjct: 6 YQWEVILPALEGKNIIIWLPTGAGKTRAAAYVAKRHLDMMDGAKVAVLVNKVHLVSQHEK 65
Query: 172 ACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT----CL 223
++G PQ WTI M+G P RA F R + T ++L + S
Sbjct: 66 EFRQMLG-PQ-WTIVTMSGDRGP--RAGFGHMVRCTDLVICTAELLRLALISTEEEEHVE 121
Query: 224 MKYLVCLVIDEAHRATGNYAYCTAI-----RELMSVPVQLRILALTATP---------GS 269
+ L++DE H + Y + R+L ++L LTA+P G+
Sbjct: 122 LSAFSLLIVDECHHTQKDSVYNVILSHYLERKLQGATALPQVLGLTASPGTGGASTLEGA 181
Query: 270 KQQTIQHI--IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVI 327
K +Q +D +IS+ + E ++ SS R + ++ + + + +++
Sbjct: 182 KNHILQLCANLDTCHISSPQRYYEQLEEHSS----RPCKRYDLSQERNPDPFGDLLKKLM 237
Query: 328 RPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY 387
RL L +RD+ S++ +Q + + G ++ A+
Sbjct: 238 DEIQDRLEMPEL--SRDF---------GSQNYEQQVVELSNKAAEQGHLQRRVFAM---- 282
Query: 388 HIRRL---LSSHGIRPAYEML---------EEKLKQGSF--ARFMSKNEDIRKVKLLMQQ 433
H+RR L HG A + L E+ K G R++ + D K L +
Sbjct: 283 HLRRYNDALLIHGTVRAVDALTSLASFYTEEQMTKVGVLPAERWLLQLFDRHKEALALLA 342
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----V 489
S + ++PKL + ++L + F + DP SR IIF+ R S R ++ L L +
Sbjct: 343 SDAQ-FENPKLKDLEDILEELFSSPDP--SRGIIFARTRRSARALVLWLQEQPRLQRLGI 399
Query: 490 KATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA 549
KA G + +Q Q+ V+++FR G N++VATS+ EEGLDI + ++++ +D
Sbjct: 400 KAHVLTGAGNSSQITHMTQTEQREVIQRFREGTLNLLVATSVAEEGLDIPQCNMIVRYDL 459
Query: 550 NVSPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 460 LTNEISMMQARGR 472
>gi|297728049|ref|NP_001176388.1| Os11g0180500 [Oryza sativa Japonica Group]
gi|255679849|dbj|BAH95116.1| Os11g0180500 [Oryza sativa Japonica Group]
Length = 97
Score = 83.6 bits (205), Expect = 6e-13, Method: Composition-based stats.
Identities = 36/54 (66%), Positives = 44/54 (81%)
Query: 107 NVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160
NV VR+YQ + ALF+NTLVALPTGLGKT IAAVV+YN+FRWFP+G ++ A
Sbjct: 17 NVQVREYQKKFVEKALFTNTLVALPTGLGKTFIAAVVMYNYFRWFPEGNFLYHA 70
>gi|410108626|gb|AFP73448.2| retinoic acid inducible protein 1, partial [Anser anser]
Length = 672
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 115/492 (23%), Positives = 211/492 (42%), Gaps = 74/492 (15%)
Query: 127 LVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLVMQQIEAC--------HN 175
L+ PTG GKT +A +V + F+ P GK+VF A P+ QQ ++
Sbjct: 2 LICAPTGSGKTFVALLVCEHHFQNMPAGRKGKVVFLATKVPVYEQQKNVFKQHFERRGYS 61
Query: 176 IVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL-MKYLVCLVIDE 234
I G+ E S + + + +TPQ+L + GT + ++ DE
Sbjct: 62 IQGVSGE-------NFSNVSVENVIEDNDIIVLTPQILVNSFEDGTLTSLSVFTLMIFDE 114
Query: 235 AHRATGNYAYCTAIRELM-----SVPVQL-RILALTATPG-----SKQQTIQHI---IDN 280
H TGN+ Y + + S QL +IL LTA+ G + ++TI+HI
Sbjct: 115 CHNTTGNHPYNVLMTRYLEQKFNSPASQLSQILGLTASVGVGNAKNIEETIEHICSLCSY 174
Query: 281 LYISTLEYRNESDQDVSSYVHNRKIE--LIEVEMGQEAVEINNRIWEVIRPYTSRLSAIG 338
L I + E+ QD+ +++ +I+ L++ + I + + ++ ++G
Sbjct: 175 LDIQAISTVRENIQDLQRFMNKPEIDVRLVKRRVHNHFAVIISDLMSETEALMRKIYSVG 234
Query: 339 LL-QN--RDYQTLS----------PVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI- 384
+ QN +D+ T LL DK ++ I + Y ALI
Sbjct: 235 TVSQNSRKDFGTQKYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 294
Query: 385 --------TLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSIS 436
L ++ ++ P Y LE+ L A+F K ++ + S
Sbjct: 295 SEDAPIIDALSYLTEFFTNVKNGP-YTELEQHLT----AKFQEKEPELTAL------SKD 343
Query: 437 HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT--IGDLVKATEF 494
++PKL ++ +L D ++ +P+ +R ++F+ R V + + I +K
Sbjct: 344 ETNENPKLEELACILDDAYRY-NPQ-TRTLLFAKTRALVAALKKCMEENPILSYIKPDVL 401
Query: 495 IGQSSGKASKGQSQKVQQAVLEKFRAG-GYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
+G+ G + Q+ VL+ F+ +++ATS+ +EG+DI + +LV+ ++ + +
Sbjct: 402 MGRGRRDQKTGMTLPSQKGVLDAFKTSKDSRLLIATSVADEGIDIAQCNLVVLYEYSGNV 461
Query: 554 LRMIQRMGRTGR 565
+MIQ GR GR
Sbjct: 462 TKMIQVRGR-GR 472
>gi|153945886|ref|NP_766277.3| probable ATP-dependent RNA helicase DDX58 [Mus musculus]
gi|341940435|sp|Q6Q899.2|DDX58_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX58; AltName:
Full=DEAD box protein 58; AltName: Full=RIG-I-like
receptor 1; Short=RLR-1; AltName: Full=Retinoic
acid-inducible gene 1 protein; Short=RIG-1; AltName:
Full=Retinoic acid-inducible gene I protein; Short=RIG-I
gi|148673498|gb|EDL05445.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Mus musculus]
gi|189442795|gb|AAI67209.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [synthetic construct]
Length = 926
Score = 83.2 bits (204), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 121/523 (23%), Positives = 217/523 (41%), Gaps = 92/523 (17%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLV 166
R+YQ + A NT++ PTG GKT ++ ++ + + FP GK+VF A P+
Sbjct: 245 RNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVY 304
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ +NI I + ++ Q + + +TPQ+L ++
Sbjct: 305 EQQATVFSRYFERLGYNIASISGATSDSVSVQ-------HIIEDNDIIILTPQILVNNLN 357
Query: 219 SGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELMS---------VPVQLRILALTATPG 268
+G + ++ DE H + N+ Y + + +P +++ LTA+ G
Sbjct: 358 NGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLP---QVVGLTASVG 414
Query: 269 -----SKQQTIQHI------IDNLYIST-------LEYRNESDQDVSSYVHNRKIELIEV 310
+ ++ +QHI +D I+T LE Q +S V +R +
Sbjct: 415 VGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKC 474
Query: 311 EMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS----------PVDLLNSRDKF 360
+ Q E ++ + + L + +QNR++ T + DK
Sbjct: 475 IISQLMKETE----KLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKE 530
Query: 361 RQAPPPNLPQIKFGEVEAYFGALI---------TLYHIRRLLSSHGIR-PAYEMLEEKLK 410
++ + + Y ALI L +++ H +R A++ E +L
Sbjct: 531 EESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFF--HDVREAAFDETERELT 588
Query: 411 QGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSN 470
+ RF K E++ KV S ++PKL + VL + + K ++ I+F
Sbjct: 589 R----RFEEKLEELEKV------SRDPSNENPKLRDLYLVLQEEYHLK--PETKTILFVK 636
Query: 471 FRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIV 527
R V + + L +K G+ + G + Q+ VLE FRA G N+++
Sbjct: 637 TRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILI 696
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
ATS+ +EG+DI E +LVI ++ + ++MIQ GR GR D +
Sbjct: 697 ATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRARDSK 738
>gi|45385112|gb|AAS59532.1| DEAD/H box polypeptide RIG-I [Mus musculus]
Length = 926
Score = 83.2 bits (204), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 117/518 (22%), Positives = 221/518 (42%), Gaps = 82/518 (15%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLV 166
R+YQ + A NT++ PTG GKT ++ ++ + + FP GK+VF A P+
Sbjct: 245 RNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHRLKKFPCGQKGKVVFFANQIPVY 304
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ +NI I + ++ Q + + +TPQ+L ++
Sbjct: 305 EQQATVFSRYFERLGYNIASISGATSDSVSVQ-------HIIEDNDIIILTPQILVNNLN 357
Query: 219 SGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELMS---------VPVQLRILALTATPG 268
+G + ++ DE H + N+ Y + + +P +++ LTA+ G
Sbjct: 358 NGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLP---QVVGLTASVG 414
Query: 269 -----SKQQTIQHI------IDNLYIST-------LEYRNESDQDVSSYVHNRKIELIEV 310
+ ++ +QHI +D I+T LE Q +S V +R +
Sbjct: 415 VGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKC 474
Query: 311 EMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQ 370
+ Q E ++ + + L + +QNR++ T + K ++ Q
Sbjct: 475 IISQLMKETE----KLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHK-----ACSVFQ 525
Query: 371 IKFGEVEAYFGALITLY--HIRRLLSSHGIRPAYEMLE---------EKLKQGSFARFMS 419
+ E E+ + LY H+R+ + I +M + +++ +F +
Sbjct: 526 MADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDE--T 583
Query: 420 KNEDIRKVKLLMQQS--ISHGA--QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
+ E R+ + +++ +S G ++PKL + VL + + K ++ I+F R V
Sbjct: 584 ERELTRRFEEKLEELEKVSRGPSNENPKLRDLYLVLQEEYHLK--PETKTILFVKTRALV 641
Query: 476 RDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIVATSIG 532
+ + L +K G+ + G + Q+ VLE FRA G N+++ATS+
Sbjct: 642 DALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVA 701
Query: 533 EEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
+EG+DI E +LVI ++ + ++MIQ GR GR D +
Sbjct: 702 DEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRARDSK 738
>gi|4405795|gb|AAD19826.1| RNA helicase [Homo sapiens]
Length = 925
Score = 83.2 bits (204), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/527 (22%), Positives = 234/527 (44%), Gaps = 81/527 (15%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
+E + T +Y P R+YQ + A+ NT++ PTG GKT ++ ++ + + FP G
Sbjct: 230 SEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 288
Query: 155 ---KIVFAAPSRPLVMQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTK 203
K+VF A P+ QQ + + GI T + P ++ +
Sbjct: 289 QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS-----GATAENVPVEQIV--ENN 341
Query: 204 RVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVP 255
+ +TPQ+L +++ GT + ++ DE H + + Y + + S P
Sbjct: 342 DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGP 401
Query: 256 VQLRILALTATPG-----SKQQTIQHI------IDNLYISTLEYRNESDQDVS------- 297
+ +++ LTA+ G + + + +I +D I+T+++ E + V
Sbjct: 402 LP-QVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFF 460
Query: 298 SYVHNR---KIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLL 354
V +R K + I ++ ++ + RI L + +QNR++ T +
Sbjct: 461 RKVESRISDKFKYIIAQLMRDTESLAKRI-------CKDLENLSQIQNREFGTQKYEQWI 513
Query: 355 NSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLE 406
+ K + Q+ + E+ + LY H+R+ ++S H ++ A + L+
Sbjct: 514 VTVQK-----ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLK 568
Query: 407 EKLKQGSFARFMSKNEDIRKV---KLLMQQSISH--GAQSPKLSKMLEVLVDHFKTKDPK 461
+ A F +D+ + KL +S+S ++PKL + +L + + +P+
Sbjct: 569 DFFSNVRAAGFEEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL-NPE 627
Query: 462 HSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
+ I+F R V + N + L +K G+ + G + Q+ +L+ F+
Sbjct: 628 -TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
Query: 520 AGG-YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
A G +N+++ATS+ +EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
>gi|157059804|gb|AAI52541.1| Ddx58 protein [Mus musculus]
Length = 925
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 121/523 (23%), Positives = 217/523 (41%), Gaps = 92/523 (17%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLV 166
R+YQ + A NT++ PTG GKT ++ ++ + + FP GK+VF A P+
Sbjct: 244 RNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVY 303
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ +NI I + ++ Q + + +TPQ+L ++
Sbjct: 304 EQQATVFSRYFERLGYNIASISGATSDSVSVQ-------HIIEDNDIIILTPQILVNNLN 356
Query: 219 SGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELMS---------VPVQLRILALTATPG 268
+G + ++ DE H + N+ Y + + +P +++ LTA+ G
Sbjct: 357 NGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLP---QVVGLTASVG 413
Query: 269 -----SKQQTIQHI------IDNLYIST-------LEYRNESDQDVSSYVHNRKIELIEV 310
+ ++ +QHI +D I+T LE Q +S V +R +
Sbjct: 414 VGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKC 473
Query: 311 EMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS----------PVDLLNSRDKF 360
+ Q E ++ + + L + +QNR++ T + DK
Sbjct: 474 IISQLMKETE----KLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKE 529
Query: 361 RQAPPPNLPQIKFGEVEAYFGALI---------TLYHIRRLLSSHGIR-PAYEMLEEKLK 410
++ + + Y ALI L +++ H +R A++ E +L
Sbjct: 530 EESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFF--HDVREAAFDETERELT 587
Query: 411 QGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSN 470
+ RF K E++ KV S ++PKL + VL + + K ++ I+F
Sbjct: 588 R----RFEEKLEELEKV------SRDPSNENPKLRDLYLVLQEEYHLK--PETKTILFVK 635
Query: 471 FRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIV 527
R V + + L +K G+ + G + Q+ VLE FRA G N+++
Sbjct: 636 TRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILI 695
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
ATS+ +EG+DI E +LVI ++ + ++MIQ GR GR D +
Sbjct: 696 ATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRARDSK 737
>gi|119850851|gb|AAI27164.1| Ddx58 protein [Mus musculus]
Length = 924
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 121/523 (23%), Positives = 217/523 (41%), Gaps = 92/523 (17%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLV 166
R+YQ + A NT++ PTG GKT ++ ++ + + FP GK+VF A P+
Sbjct: 243 RNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVY 302
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ +NI I + ++ Q + + +TPQ+L ++
Sbjct: 303 EQQATVFSRYFERLGYNIASISGATSDSVSVQ-------HIIEDNDIIILTPQILVNNLN 355
Query: 219 SGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELMS---------VPVQLRILALTATPG 268
+G + ++ DE H + N+ Y + + +P +++ LTA+ G
Sbjct: 356 NGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLP---QVVGLTASVG 412
Query: 269 -----SKQQTIQHI------IDNLYIST-------LEYRNESDQDVSSYVHNRKIELIEV 310
+ ++ +QHI +D I+T LE Q +S V +R +
Sbjct: 413 VGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKC 472
Query: 311 EMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS----------PVDLLNSRDKF 360
+ Q E ++ + + L + +QNR++ T + DK
Sbjct: 473 IISQLMKETE----KLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKE 528
Query: 361 RQAPPPNLPQIKFGEVEAYFGALI---------TLYHIRRLLSSHGIR-PAYEMLEEKLK 410
++ + + Y ALI L +++ H +R A++ E +L
Sbjct: 529 EESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFF--HDVREAAFDETERELT 586
Query: 411 QGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSN 470
+ RF K E++ KV S ++PKL + VL + + K ++ I+F
Sbjct: 587 R----RFEEKLEELEKV------SRDPSNENPKLRDLYLVLQEEYHLK--PETKTILFVK 634
Query: 471 FRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIV 527
R V + + L +K G+ + G + Q+ VLE FRA G N+++
Sbjct: 635 TRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILI 694
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
ATS+ +EG+DI E +LVI ++ + ++MIQ GR GR D +
Sbjct: 695 ATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRARDSK 736
>gi|164424566|ref|XP_963538.2| hypothetical protein NCU06766 [Neurospora crassa OR74A]
gi|157070568|gb|EAA34302.2| predicted protein [Neurospora crassa OR74A]
Length = 1421
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 120/491 (24%), Positives = 204/491 (41%), Gaps = 66/491 (13%)
Query: 105 PVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164
P + R YQ + + +L N ++ + ++A ++W G+I F P+
Sbjct: 66 PAALTARAYQLEMFEASLKQNIILFS----DRVMVAD----GHWQWQDSGRIWFLTPTVA 117
Query: 165 LVMQQIEACHNIVG--IPQEWTIDMTGQ--ISPTKRASFWKTK----RVFFVTPQVLEKD 216
L QQ H ++ IP I + GQ + + W R+ T Q+L
Sbjct: 118 LARQQ----HRVLQSQIPSVKAIMLCGQDGVDSWSEQAVWDAVLLNVRIVVSTYQILFDA 173
Query: 217 IQSGTCLMKYLVCLVIDEAHRATGNY--------AYCTAIRELMSVPVQLRILALTATPG 268
+ L +VIDEAH +G++ AY A + + VP IL LTA+P
Sbjct: 174 NAHSFVRLDSLSLIVIDEAHNCSGSHPIARLMTEAYLPAKKAGLPVP---SILGLTASPL 230
Query: 269 SKQ-----QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI 323
+ ++ ++D + + +R E H + E++ V G +
Sbjct: 231 KSNNLADIEKLEQVLDAVCRTPTIHREEL------LAHVNRPEMLVVSYGDSGTDPTPT- 283
Query: 324 WEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQ--APPPNLPQIKFGEVEAYFG 381
+++ + + + ++ D L +R+K RQ L Q + V Y
Sbjct: 284 -DLMTRFLEAYHRLDISKDPDVLLLKAQRTERAREKLRQMITKKDTLAQKELRGV--YNR 340
Query: 382 ALITLYHIRRLLSSHGI-RPAYEMLEEKLKQGSFARFMSKNEDIRKVKL--LMQQSISHG 438
AL+ I + + + R ML E + A+ E +R + + + ++ I
Sbjct: 341 ALLVRREIGPWAADYYLTRTVSHMLAELERGEPPAQHRYIGEALRSIPIPAISKEPIQ-- 398
Query: 439 AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT---IGDLVKATEFI 495
SPK+ +L+VL H +DP I+F R V + + ++T D + I
Sbjct: 399 -LSPKVQTLLKVLASH--QQDPVG---IVFVKERVMVSIVTHIISTHPLTKDRYRTASMI 452
Query: 496 GQSS--GKASK--GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
G +S GKA ++K LE FR G +N++VATS+ EEG+D+ +LVICFD
Sbjct: 453 GTASVPGKARNHMDMTKKEDMTSLEGFRLGRFNLLVATSVLEEGIDVPICNLVICFDEPS 512
Query: 552 SPLRMIQRMGR 562
+ IQR GR
Sbjct: 513 NIKSFIQRRGR 523
>gi|302766077|ref|XP_002966459.1| hypothetical protein SELMODRAFT_407400 [Selaginella moellendorffii]
gi|300165879|gb|EFJ32486.1| hypothetical protein SELMODRAFT_407400 [Selaginella moellendorffii]
Length = 497
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 120/467 (25%), Positives = 195/467 (41%), Gaps = 74/467 (15%)
Query: 125 NTLVALPTGLGKTLIAAVVIY---NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQ 181
NT+V L TG GKT+IA ++I + FR G VF AP+ L QQ E +
Sbjct: 2 NTIVCLETGCGKTMIAVLLIRSLSHLFRKPEKGICVFLAPTVSLCEQQAEVIERYTDLYV 61
Query: 182 EWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN 241
+ T + + + + VF +TP +L +++ ++ L+ DE H
Sbjct: 62 GTYVGGTSTMDVHWWTTHLQKQEVFVMTPAILLDNLRHRFFNPDHVELLIFDECHHCAKG 121
Query: 242 YAYCTAIRELMSVPVQL--RILALTATP-------GSKQQTIQHIIDNLYISTLEYR--N 290
+ Y + E P RIL +TA+P S Q + D L + L +
Sbjct: 122 HPYANIMSEFYHKPEAKCPRILGMTASPIVGKGKTWSGPQAFKESFDCLE-TMLRSKIIT 180
Query: 291 ESDQDVSSYVHNRKIELIE----VEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ----- 341
+D++++S++ + +++ E + +I+NR + R + GL +
Sbjct: 181 FADEELTSFLPSSDMKIKEYLPDTKGKHRTTDIDNRFENLTREF-------GLPEERQAV 233
Query: 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQI--KFGEVEAYFGALITLYHIRRLLSSHGIR 399
N+ Y TL+ R+A L K + EA F +RR+L+
Sbjct: 234 NKIYNTLNYCLFELGLFSARKAAEIMLAGCDGKGRDAEAAF--------LRRVLN----- 280
Query: 400 PAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKD 459
+LEEK A ++ IR + S K+ +L+VL ++ K
Sbjct: 281 ----ILEEKAILDGTA-----DDQIRAI-------------SSKVQLLLDVLDEY---KS 315
Query: 460 PKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
+ R I+F R ++ L V+A + + K KG + Q+ LE FR
Sbjct: 316 AQDLRCIVFVE-RVIAAKVLTLLLNSRPYVRA-QCVASHRNKL-KGLTLATQRNSLEDFR 372
Query: 520 AGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
AG NVIVAT++ EEGLDI LVI F+ + IQ GR ++
Sbjct: 373 AGKANVIVATNVAEEGLDIQSCSLVIRFNMPKTERSSIQSRGRARKQ 419
>gi|114624054|ref|XP_001156498.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 isoform 2 [Pan
troglodytes]
gi|193785120|dbj|BAG54273.1| unnamed protein product [Homo sapiens]
Length = 854
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/527 (22%), Positives = 234/527 (44%), Gaps = 81/527 (15%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
+E + T +Y P R+YQ + A+ NT++ PTG GKT ++ ++ + + FP G
Sbjct: 159 SEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 217
Query: 155 ---KIVFAAPSRPLVMQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTK 203
K+VF A P+ QQ + + GI T + P ++ +
Sbjct: 218 QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS-----GATAENVPVEQIV--ENN 270
Query: 204 RVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVP 255
+ +TPQ+L +++ GT + ++ DE H + + Y + + S P
Sbjct: 271 DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGP 330
Query: 256 VQLRILALTATPG-----SKQQTIQHI------IDNLYISTLEYRNESDQDVS------- 297
+ +++ LTA+ G + + + +I +D I+T+++ E + V
Sbjct: 331 LP-QVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFF 389
Query: 298 SYVHNR---KIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLL 354
V +R K + I ++ ++ + RI L + +QNR++ T +
Sbjct: 390 RKVESRISDKFKYIIAQLMRDTESLAKRI-------CKDLENLSQIQNREFGTQKYEQWI 442
Query: 355 NSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLE 406
+ K + Q+ + E+ + LY H+R+ ++S H ++ A + L+
Sbjct: 443 VTVQK-----ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLK 497
Query: 407 EKLKQGSFARFMSKNEDIRKV---KLLMQQSISH--GAQSPKLSKMLEVLVDHFKTKDPK 461
+ A F +D+ + KL +S+S ++PKL + +L + + +P+
Sbjct: 498 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL-NPE 556
Query: 462 HSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
+ I+F R V + N + L +K G+ + G + Q+ +L+ F+
Sbjct: 557 -TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 615
Query: 520 AGG-YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
A G +N+++ATS+ +EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 616 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 661
>gi|355567708|gb|EHH24049.1| Putative ATP-dependent RNA helicase DDX58 [Macaca mulatta]
Length = 925
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/513 (22%), Positives = 223/513 (43%), Gaps = 80/513 (15%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPL 165
+R+YQ + A NT++ PTG GKTL+A ++ + + FP GK+VF A P+
Sbjct: 243 LRNYQLELALPAKKGKNTIICAPTGCGKTLVAVLICEHHLKKFPPGQKGKVVFFANQIPV 302
Query: 166 VMQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
QQ + + GI T + P ++ + + +TPQ+L ++
Sbjct: 303 YEQQESVFSKYFERLGYRVTGIS-----GATAENVPVEQIV--ENNDIIILTPQILVNNL 355
Query: 218 QSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATPG- 268
+ GT + ++ DE H + + Y + + S P+ +++ LTA+ G
Sbjct: 356 KKGTIPSLSVFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP-QVIGLTASVGV 414
Query: 269 ----SKQQTIQHI------IDNLYIST-------LEYRNESDQDVSSYVHNR---KIELI 308
+ + +I +D I+T LE Q V +R K + I
Sbjct: 415 GDAKDTDEALDYICKLCASLDASVIATVKDNLEELEQVVYKPQKFFRKVESRVSDKFKCI 474
Query: 309 EVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNL 368
++ ++ + RI L + +QNR++ T + + K +
Sbjct: 475 IAQLMRDTESLAKRI-------CKDLESFSQIQNREFGTQKYEQWIVTVQK-----ACMV 522
Query: 369 PQIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLEEKLKQGSFARFMSK 420
Q+ + E+ + LY H+R+ ++S H ++ A + L++ A F
Sbjct: 523 FQMSDKDEESRICKALFLYTSHLRKYNDALIISEHARLKDALDYLKDFFSNVRAAGFDET 582
Query: 421 NEDIRKV---KLLMQQSISH--GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
+D+ + KL +S+S ++PKL + +L + + +P+ + I+F R V
Sbjct: 583 EQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL-NPE-TITILFVKTRALV 640
Query: 476 RDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIVATSIG 532
+ N + L +K G+ + G + Q+ +LE F+ G +N+++ATS+
Sbjct: 641 DALKNWIEGNPKLHFLKPGILTGRGKTNQNTGMTLPAQKCILEAFKVNGDHNILIATSVA 700
Query: 533 EEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
+EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 701 DEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
>gi|355753280|gb|EHH57326.1| Putative ATP-dependent RNA helicase DDX58 [Macaca fascicularis]
Length = 925
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/513 (22%), Positives = 223/513 (43%), Gaps = 80/513 (15%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPL 165
+R+YQ + A NT++ PTG GKTL+A ++ + + FP GK+VF A P+
Sbjct: 243 LRNYQLELALPAKKGKNTIICAPTGCGKTLVAVLICEHHLKKFPPGQKGKVVFFANQIPV 302
Query: 166 VMQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
QQ + + GI T + P ++ + + +TPQ+L ++
Sbjct: 303 YEQQESVFSKYFERLGYRVTGIS-----GATAENVPVEQIV--ENNDIIILTPQILVNNL 355
Query: 218 QSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATPG- 268
+ GT + ++ DE H + + Y + + S P+ +++ LTA+ G
Sbjct: 356 KKGTIPSLSVFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP-QVIGLTASVGV 414
Query: 269 ----SKQQTIQHI------IDNLYIST-------LEYRNESDQDVSSYVHNR---KIELI 308
+ + +I +D I+T LE Q V +R K + I
Sbjct: 415 GDAKDTDEALDYICKLCASLDASVIATVKDNLEELEQVVYKPQKFFRKVESRVSDKFKCI 474
Query: 309 EVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNL 368
++ ++ + RI L + +QNR++ T + + K +
Sbjct: 475 IAQLMRDTESLAKRI-------CKDLESFSQIQNREFGTQKYEQWIVTVQK-----ACMV 522
Query: 369 PQIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLEEKLKQGSFARFMSK 420
Q+ + E+ + LY H+R+ ++S H ++ A + L++ A F
Sbjct: 523 FQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARVKDALDYLKDFFSNVRAAGFDET 582
Query: 421 NEDIRKV---KLLMQQSISH--GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
+D+ + KL +S+S ++PKL + +L + + +P+ + I+F R V
Sbjct: 583 EQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL-NPE-TITILFVKTRALV 640
Query: 476 RDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIVATSIG 532
+ N + L +K G+ + G + Q+ +LE F+ G +N+++ATS+
Sbjct: 641 DALKNWIEGNPKLHFLKPGILTGRGKTNQNTGMTLPAQKCILEAFKVNGDHNILIATSVA 700
Query: 533 EEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
+EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 701 DEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
>gi|27881482|ref|NP_055129.2| probable ATP-dependent RNA helicase DDX58 [Homo sapiens]
gi|114624048|ref|XP_001156662.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 isoform 4 [Pan
troglodytes]
gi|81170421|sp|O95786.2|DDX58_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX58; AltName:
Full=DEAD box protein 58; AltName: Full=RIG-I-like
receptor 1; Short=RLR-1; AltName: Full=Retinoic
acid-inducible gene 1 protein; Short=RIG-1; AltName:
Full=Retinoic acid-inducible gene I protein; Short=RIG-I
gi|119578952|gb|EAW58548.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58, isoform CRA_b [Homo
sapiens]
gi|124376888|gb|AAI32787.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Homo sapiens]
gi|168278056|dbj|BAG11006.1| ATP-dependent RNA helicase DDX58 [synthetic construct]
gi|187952415|gb|AAI36611.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Homo sapiens]
gi|410218244|gb|JAA06341.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Pan troglodytes]
gi|410302632|gb|JAA29916.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Pan troglodytes]
gi|410336301|gb|JAA37097.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Pan troglodytes]
Length = 925
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/527 (22%), Positives = 234/527 (44%), Gaps = 81/527 (15%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
+E + T +Y P R+YQ + A+ NT++ PTG GKT ++ ++ + + FP G
Sbjct: 230 SEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 288
Query: 155 ---KIVFAAPSRPLVMQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTK 203
K+VF A P+ QQ + + GI T + P ++ +
Sbjct: 289 QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS-----GATAENVPVEQIV--ENN 341
Query: 204 RVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVP 255
+ +TPQ+L +++ GT + ++ DE H + + Y + + S P
Sbjct: 342 DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGP 401
Query: 256 VQLRILALTATPG-----SKQQTIQHI------IDNLYISTLEYRNESDQDVS------- 297
+ +++ LTA+ G + + + +I +D I+T+++ E + V
Sbjct: 402 LP-QVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFF 460
Query: 298 SYVHNR---KIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLL 354
V +R K + I ++ ++ + RI L + +QNR++ T +
Sbjct: 461 RKVESRISDKFKYIIAQLMRDTESLAKRI-------CKDLENLSQIQNREFGTQKYEQWI 513
Query: 355 NSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLE 406
+ K + Q+ + E+ + LY H+R+ ++S H ++ A + L+
Sbjct: 514 VTVQK-----ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLK 568
Query: 407 EKLKQGSFARFMSKNEDIRKV---KLLMQQSISH--GAQSPKLSKMLEVLVDHFKTKDPK 461
+ A F +D+ + KL +S+S ++PKL + +L + + +P+
Sbjct: 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL-NPE 627
Query: 462 HSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
+ I+F R V + N + L +K G+ + G + Q+ +L+ F+
Sbjct: 628 -TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
Query: 520 AGG-YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
A G +N+++ATS+ +EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
>gi|77415358|gb|AAI06096.1| Ddx58 protein, partial [Mus musculus]
Length = 763
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 121/523 (23%), Positives = 217/523 (41%), Gaps = 92/523 (17%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLV 166
R+YQ + A NT++ PTG GKT ++ ++ + + FP GK+VF A P+
Sbjct: 245 RNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVY 304
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ +NI I + ++ Q + + +TPQ+L ++
Sbjct: 305 EQQATVFSRYFERLGYNIASISGATSDSVSVQ-------HIIEDNDIIILTPQILVNNLN 357
Query: 219 SGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELMS---------VPVQLRILALTATPG 268
+G + ++ DE H + N+ Y + + +P +++ LTA+ G
Sbjct: 358 NGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLP---QVVGLTASVG 414
Query: 269 -----SKQQTIQHI------IDNLYIST-------LEYRNESDQDVSSYVHNRKIELIEV 310
+ ++ +QHI +D I+T LE Q +S V +R +
Sbjct: 415 VGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKC 474
Query: 311 EMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS----------PVDLLNSRDKF 360
+ Q E ++ + + L + +QNR++ T + DK
Sbjct: 475 IISQLMKETE----KLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKE 530
Query: 361 RQAPPPNLPQIKFGEVEAYFGALI---------TLYHIRRLLSSHGIR-PAYEMLEEKLK 410
++ + + Y ALI L +++ H +R A++ E +L
Sbjct: 531 EESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFF--HDVREAAFDETERELT 588
Query: 411 QGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSN 470
+ RF K E++ KV S ++PKL + VL + + K ++ I+F
Sbjct: 589 R----RFEEKLEELEKV------SRDPSNENPKLRDLYLVLQEEYHLK--PETKTILFVK 636
Query: 471 FRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIV 527
R V + + L +K G+ + G + Q+ VLE FRA G N+++
Sbjct: 637 TRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILI 696
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
ATS+ +EG+DI E +LVI ++ + ++MIQ GR GR D +
Sbjct: 697 ATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRARDSK 738
>gi|403297888|ref|XP_003939778.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 [Saimiri
boliviensis boliviensis]
Length = 937
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 116/520 (22%), Positives = 222/520 (42%), Gaps = 94/520 (18%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPL 165
+R YQ + A NT++ PTG GKT +A ++ + + FP G K+VF A P+
Sbjct: 243 LRSYQLELALPAKKGKNTIICAPTGCGKTFVALLICEHHLKKFPQGQKGKVVFFANQIPV 302
Query: 166 VMQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
QQ + + GI T +P K+ + + +TPQ+L ++
Sbjct: 303 YEQQKSVFSKYFERLGYRVTGIS-----GATADNAPVKQMV--ENNDIIILTPQILVNNL 355
Query: 218 QSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATPG- 268
++GT + ++ DE H + + Y + + S P+ +++ LTA+ G
Sbjct: 356 KNGTIPSLSVFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP-QVIGLTASVGV 414
Query: 269 ----SKQQTIQHIID---NLYISTLEYRNESDQDVSSYVH-------------NRKIELI 308
S + + +I +L S + ++ +++ V+ N K + I
Sbjct: 415 GDAKSTDEALDYICKLCASLDASVIATVRDNLEELEQVVYKPQKFFRKVESRINDKFKCI 474
Query: 309 EVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS----------PVDLLNSRD 358
++ +E + RI L + +QNR++ T + D
Sbjct: 475 IAQLMRETESLAKRI-------CKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPD 527
Query: 359 KFRQAPPPNLPQIKFGEVEAYFGALI---------TLYHIRRLLSSHGIRPA-YEMLEEK 408
K ++ + + Y ALI L++++ S+ +R A ++ E+
Sbjct: 528 KDEESRICKALFLYTSHLRKYNDALIINEDARMKDALHYLKDFFSN--VRAAGFDETEQD 585
Query: 409 LKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIF 468
L Q RF K +++ V S ++PKL + +L + + +P+ + I+F
Sbjct: 586 LTQ----RFEEKLQELESV------SRDPSNENPKLEDLCFILREEYHL-NPE-TITILF 633
Query: 469 SNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRA-GGYNV 525
R V + N + L +K G+S + G + Q+ +L+ F+A G +N+
Sbjct: 634 VKTRALVDALKNWIEGNPQLSFLKPGILTGRSKTNQNTGMTLPAQKCILDSFKAHGDHNI 693
Query: 526 IVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
++ATS+ +EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 694 LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
>gi|301785794|ref|XP_002928312.1| PREDICTED: probable ATP-dependent RNA helicase DDX58-like
[Ailuropoda melanoleuca]
gi|281341395|gb|EFB16979.1| hypothetical protein PANDA_018227 [Ailuropoda melanoleuca]
Length = 928
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 114/507 (22%), Positives = 221/507 (43%), Gaps = 65/507 (12%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R+YQ + A NT++ PTG GKT ++ ++ + + FP G K+VF A P+
Sbjct: 242 RNYQLELALPAKEGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFAIQLPVY 301
Query: 167 MQQ---IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC- 222
QQ +G T +I + + + +TPQ+L ++ GT
Sbjct: 302 EQQKSVFSKYFEKLGYKVAGVSGATSEIVSVEEIV--ENYDIIILTPQILVNSLRKGTVP 359
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATPGS------ 269
+ ++ DE H ++ Y + + S P+ +++ LTA+ G+
Sbjct: 360 SLSVFTLMIFDECHNTGKHHPYNMIMFNYLDQKLGGSSDPLP-QVIGLTASVGTGDAKNT 418
Query: 270 --KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHN-----RKIEL--------IEVEMGQ 314
+ I + +L S + ++ +++ V+ RK++L I ++ +
Sbjct: 419 TEAMEYICKLCASLDTSVIATVKDNLEELEEIVYKPQKFFRKVKLRTTDRFKCIISQLMR 478
Query: 315 EAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFG 374
E + +I++ + T L + +QNR++ T + S K L Q+
Sbjct: 479 ETESLAKKIFDELSTVT--LENVFQIQNRNFGTQKYEQWILSVQK-----TCILFQLPDK 531
Query: 375 EVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLEEKLKQGSFARFMSKNEDI-- 424
E E+ + LY H+R+ +++ H ++ A + L++ A F + +
Sbjct: 532 EEESRICKALYLYTSHLRKYNDALIINEHARMKDALDYLKDFFANVRAAGFDEIEQHLTW 591
Query: 425 ---RKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNA 481
K++ L S+ G ++PKL + +L + + +P+ SR I+F R V +
Sbjct: 592 RFEEKLRELESVSMDPGNENPKLQDLSFILQEEYHL-NPE-SRTILFVKTRALVDALKKW 649
Query: 482 LATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIVATSIGEEGLDI 538
+ +L +K G+ + G + Q+ L+ FR G +++ATS+ +EG+DI
Sbjct: 650 IEENSELSFLKPGILTGRGKTNQNTGMTLPAQKCALDAFRTDGDKKILIATSVADEGIDI 709
Query: 539 MEVDLVICFDANVSPLRMIQRMGRTGR 565
+ +LVI ++ + +RMIQ GR GR
Sbjct: 710 AQCNLVILYEYVGNVIRMIQTRGR-GR 735
>gi|111154107|ref|NP_001036133.1| probable ATP-dependent RNA helicase DDX58 [Macaca mulatta]
gi|110340386|gb|ABG67971.1| retinoic acid-inducible protein I [Macaca mulatta]
gi|380811238|gb|AFE77494.1| putative ATP-dependent RNA helicase DDX58 [Macaca mulatta]
gi|383412499|gb|AFH29463.1| putative ATP-dependent RNA helicase DDX58 [Macaca mulatta]
Length = 925
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/513 (22%), Positives = 223/513 (43%), Gaps = 80/513 (15%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPL 165
+R+YQ + A NT++ PTG GKTL+A ++ + + FP GK+VF A P+
Sbjct: 243 LRNYQLELALPAKKGKNTIICAPTGCGKTLVAVLICEHHLKKFPPGQKGKVVFFANQIPV 302
Query: 166 VMQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
QQ + + GI T + P ++ + + +TPQ+L ++
Sbjct: 303 YEQQESVFSKYFERLGYRVTGIS-----GATAENVPVEQIV--ENNDIIILTPQILVNNL 355
Query: 218 QSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATPG- 268
+ GT + ++ DE H + + Y + + S P+ +++ LTA+ G
Sbjct: 356 KKGTIPSLSVFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP-QVIGLTASVGV 414
Query: 269 ----SKQQTIQHI------IDNLYIST-------LEYRNESDQDVSSYVHNR---KIELI 308
+ + +I +D I+T LE Q V +R K + I
Sbjct: 415 GDAKDTDEALDYICKLCASLDASVIATVKDNLEELEQVVYKPQKFFRKVESRVSDKFKCI 474
Query: 309 EVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNL 368
++ ++ + RI L + +QNR++ T + + K +
Sbjct: 475 IAQLMRDTESLAKRI-------CKDLESFSQIQNREFGTQKYEQWIVTVQK-----ACMV 522
Query: 369 PQIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLEEKLKQGSFARFMSK 420
Q+ + E+ + LY H+R+ ++S H ++ A + L++ A F
Sbjct: 523 FQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARLKDALDYLKDFFSNVRAAGFDET 582
Query: 421 NEDIRKV---KLLMQQSISH--GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
+D+ + KL +S+S ++PKL + +L + + +P+ + I+F R V
Sbjct: 583 EQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL-NPE-TITILFVKTRALV 640
Query: 476 RDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIVATSIG 532
+ N + L +K G+ + G + Q+ +LE F+ G +N+++ATS+
Sbjct: 641 DALKNWIEGNPKLHFLKPGILTGRGKTNQNTGMTLPAQKCILEAFKVNGDHNILIATSVA 700
Query: 533 EEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
+EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 701 DEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
>gi|426361539|ref|XP_004047964.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 [Gorilla
gorilla gorilla]
Length = 890
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 118/529 (22%), Positives = 238/529 (44%), Gaps = 76/529 (14%)
Query: 94 IDAEAAKTWIYPVNVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFP 152
++ E + T +Y P R+YQ + A+ NT++ PTG GKT ++ ++ + + FP
Sbjct: 188 VEKEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP 246
Query: 153 DG---KIVFAAPSRPLVMQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWK 201
G K+VF A P+ QQ + + GI T + P ++ +
Sbjct: 247 QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS-----GATAENVPVEQIV--E 299
Query: 202 TKRVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------S 253
+ +TPQ+L +++ GT + ++ DE H + + Y + + S
Sbjct: 300 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSS 359
Query: 254 VPVQLRILALTATPG-----SKQQTIQHI------IDNLYISTLEYRNESDQDVS----- 297
P+ +++ LTA+ G + + + +I +D I+T+++ E + V
Sbjct: 360 GPLP-QVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQK 418
Query: 298 --SYVHNR---KIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVD 352
V +R K + I ++ ++ + RI + + T L + +QNR++ T
Sbjct: 419 FFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLG--TLILENLSQIQNREFGTQKYEQ 476
Query: 353 LLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEM 404
+ + K + Q+ + E+ + LY H+R+ +++ H ++ A +
Sbjct: 477 WIVTVQK-----ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIINEHARMKDALDY 531
Query: 405 LEEKLKQGSFARFMSKNEDIRKV---KLLMQQSISH--GAQSPKLSKMLEVLVDHFKTKD 459
L++ A F +D+ + KL +S+S ++PKL + +L + + +
Sbjct: 532 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL-N 590
Query: 460 PKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEK 517
P+ + I+F R V + N + L +K G+ + G + Q+ +L+
Sbjct: 591 PE-TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 649
Query: 518 FRAGG-YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
F+A G +N+++ATS+ +EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 650 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 697
>gi|116283738|gb|AAH27369.1| Ddx58 protein [Mus musculus]
Length = 763
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 121/523 (23%), Positives = 216/523 (41%), Gaps = 92/523 (17%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLV 166
R+YQ + A NT++ PTG GKT ++ ++ + + FP GK+VF A P+
Sbjct: 245 RNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVY 304
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ +NI I + ++ Q + + +TPQ+L ++
Sbjct: 305 EQQATVFSRYFERLGYNIASISGATSDSVSVQ-------HIIEDNDIIILTPQILVNNLN 357
Query: 219 SGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELMS---------VPVQLRILALTATPG 268
+G + ++ DE H + N+ Y + + +P +++ LTA+ G
Sbjct: 358 NGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLP---QVVGLTASVG 414
Query: 269 -----SKQQTIQHI------IDNLYIST-------LEYRNESDQDVSSYVHNRKIELIEV 310
+ ++ +QHI +D I+T LE Q +S V +R +
Sbjct: 415 VGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKC 474
Query: 311 EMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS----------PVDLLNSRDKF 360
+ Q E ++ + + L + +QNR++ T + DK
Sbjct: 475 IISQLMKETE----KLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKE 530
Query: 361 RQAPPPNLPQIKFGEVEAYFGALI---------TLYHIRRLLSSHGIR-PAYEMLEEKLK 410
++ + + Y ALI L +++ H +R A++ E +L
Sbjct: 531 EESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFF--HDVREAAFDETERELT 588
Query: 411 QGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSN 470
+ RF K E++ KV S + PKL + VL + + K ++ I+F
Sbjct: 589 R----RFEEKLEELEKV------SRDPSNELPKLRDLYLVLQEEYHLK--PETKTILFVK 636
Query: 471 FRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIV 527
R V + + L +K G+ + G + Q+ VLE FRA G N+++
Sbjct: 637 TRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILI 696
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
ATS+ +EG+DI E +LVI ++ + ++MIQ GR GR D +
Sbjct: 697 ATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRARDSK 738
>gi|310798327|gb|EFQ33220.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
Length = 1532
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 115/497 (23%), Positives = 191/497 (38%), Gaps = 75/497 (15%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV--------FAAPS 162
R+YQ + + A NT+V L TG GKTLIAA+++ + + + F
Sbjct: 114 REYQIELFERAKSKNTIVVLDTGSGKTLIAALLLRHILEKEIEDRATGQQKRIAFFLVDK 173
Query: 163 RPLVMQQ--IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKD 216
LV QQ + C N+ + DM ++ + FW K V T +L+K
Sbjct: 174 VSLVFQQHAVLEC-NLEHPVARFCGDMVDEMWSRE---FWAQKFEENMVIVCTAAILQKC 229
Query: 217 IQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM----SVPVQLRILALTATPGSKQQ 272
+ M+ + L+ DEAH N+ Y I++ + RIL +TA+P Q
Sbjct: 230 LTHSYIRMEQINLLIFDEAHHTKKNHPYARIIKDFYIKEPDANKRPRILGMTASPVDAQT 289
Query: 273 TIQHIIDNL-YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYT 331
I+ I L + E S++ +S H RKI E+ + +++ I
Sbjct: 290 DIKIAIAQLECLLHSEIATVSEESLSRDSHVRKITEKEIHYSSLPMPYETELYQKINALV 349
Query: 332 SR---LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGE-VEAYFGAL---- 383
R S +L P + D+F Q + ++ + E + L
Sbjct: 350 GRNQHFSKELCFAKAATSSLGPW----AADRFWQLFLTDEAIVRLTQRTEMSYSGLGSAD 405
Query: 384 ---ITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQ 440
+ +R ++ +H +PA L++
Sbjct: 406 RETAAVQKLRDVVRTHEFKPATPTLDQV-------------------------------- 433
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS---VRDIMNALATIGDLVKATEFIGQ 497
S K+ ++ E L F T +PK+ R I+F R + + D+ + +G
Sbjct: 434 SMKVLRLWEELRPRF-TSEPKY-RCIVFVEMRLTAVLLADLFKQNHIKLSYLNPAVLVGS 491
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
S S K Q + +FR N + AT + EEGLDI + +L++ FD S ++ I
Sbjct: 492 QSDTGLANMSFKQQVLTIHRFRHAEVNCLFATQVAEEGLDIPDCNLIMRFDLYKSVIQYI 551
Query: 558 QRMGRTGRKHDGRIPHI 574
Q GR R+ I I
Sbjct: 552 QSKGRARRQDSEYISFI 568
>gi|350399948|ref|XP_003485689.1| PREDICTED: endoribonuclease Dicer-like [Bombus impatiens]
Length = 1490
Score = 81.6 bits (200), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 127/545 (23%), Positives = 227/545 (41%), Gaps = 103/545 (18%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI----YNFFRWFPDG--KIVFAAPSRP 164
R YQ + +TA N ++ LPTG GKT IA ++I + R + +G +F + P
Sbjct: 11 RPYQIDLFETACKENVIIYLPTGAGKTFIAVMLIKELSADIRRPYAEGGKHTIFIVNTVP 70
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR---------VFFVTPQVLEK 215
LV+QQ + + G+ G +S + FW + V +T Q+L
Sbjct: 71 LVIQQSDYIKRLTGLS-------CGTLSSEEGVDFWHDEEWNEHLNQHEVLVMTSQILVN 123
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV--QLRILALTAT---PGSK 270
+ G + + ++ DE HRA ++ ++ + P Q R+L L+A+ +
Sbjct: 124 ALCHGYIFLNRINLIIFDECHRAVNDHPMRQIMQLFENCPKEEQPRVLGLSASLLNSNVR 183
Query: 271 QQTIQHIIDNL------------------YISTLEYRNESDQ----DVSSYVHNRKIELI 308
+ +Q ++ +L Y S +E + DQ DV ++N I+ +
Sbjct: 184 LKKVQSVMQSLEVTFNARIATATVADKSYYASPIEEIIQFDQHIIDDVGECINN-IIKEV 242
Query: 309 EVEMGQEAVEINNRIWEV---IRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPP 365
E+ + A++ N + E RP T+ G+L+N Y L + +
Sbjct: 243 ELILNCIALKDNLKYNESSAEFRPKTTSKKLSGILRNIQYHFLR-------TGIYGASKC 295
Query: 366 PNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIR 425
L I+ ++ + TLY + L+++ + ++LE+K+K GS + E I
Sbjct: 296 VLLHLIQLEYLKKSIDDVETLYILEYLITN--VINCRKLLEDKMK-GS-----PEKERI- 346
Query: 426 KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRV---IIFSNFRGSVRDIMNAL 482
+ S ++ K+L+ L D + K H +V IIF R + + + L
Sbjct: 347 -----------YNYSSDQIRKLLKALKDFYNNK--HHDQVFCCIIFVQRRFTAKILYQIL 393
Query: 483 ATIG-----DLVKATEFIGQSSGKASKGQSQKV-----QQAVLEKFRAGGYNVIVATSIG 532
+I EF+ S K + + + VL +FR G N IVAT +
Sbjct: 394 KSISLHDEEYKFLHPEFVMGVSSNPFKNPKELLCVSERNKEVLLRFRNGLLNCIVATDVI 453
Query: 533 EEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSR 592
+EG+D+ + L+I +D P+ + RT + GR H + V ++ QY+ R
Sbjct: 454 DEGIDVPKCSLIIRYDL---PMDV-----RTYIQSKGRARHAYSRYVVLLQKDDSQYLRR 505
Query: 593 GKKVK 597
+ K
Sbjct: 506 HNEYK 510
>gi|119578951|gb|EAW58547.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58, isoform CRA_a [Homo
sapiens]
Length = 703
Score = 81.6 bits (200), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 118/527 (22%), Positives = 234/527 (44%), Gaps = 81/527 (15%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
+E + T +Y P R+YQ + A+ NT++ PTG GKT ++ ++ + + FP G
Sbjct: 185 SEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 243
Query: 155 ---KIVFAAPSRPLVMQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTK 203
K+VF A P+ QQ + + GI T + P ++ +
Sbjct: 244 QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS-----GATAENVPVEQIV--ENN 296
Query: 204 RVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVP 255
+ +TPQ+L +++ GT + ++ DE H + + Y + + S P
Sbjct: 297 DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGP 356
Query: 256 VQLRILALTATPG-----SKQQTIQHI------IDNLYISTLEYRNESDQDVS------- 297
+ +++ LTA+ G + + + +I +D I+T+++ E + V
Sbjct: 357 LP-QVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFF 415
Query: 298 SYVHNR---KIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLL 354
V +R K + I ++ ++ + RI L + +QNR++ T +
Sbjct: 416 RKVESRISDKFKYIIAQLMRDTESLAKRI-------CKDLENLSQIQNREFGTQKYEQWI 468
Query: 355 NSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLE 406
+ K + Q+ + E+ + LY H+R+ ++S H ++ A + L+
Sbjct: 469 VTVQK-----ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLK 523
Query: 407 EKLKQGSFARFMSKNEDIRKV---KLLMQQSISH--GAQSPKLSKMLEVLVDHFKTKDPK 461
+ A F +D+ + KL +S+S ++PKL + +L + + +P+
Sbjct: 524 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL-NPE 582
Query: 462 HSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
+ I+F R V + N + L +K G+ + G + Q+ +L+ F+
Sbjct: 583 -TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 641
Query: 520 AGG-YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
A G +N+++ATS+ +EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 642 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 687
>gi|57997555|emb|CAI46068.1| hypothetical protein [Homo sapiens]
Length = 703
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 118/527 (22%), Positives = 234/527 (44%), Gaps = 81/527 (15%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
+E + T +Y P R+YQ + A+ NT++ PTG GKT ++ ++ + + FP G
Sbjct: 185 SEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 243
Query: 155 ---KIVFAAPSRPLVMQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTK 203
K+VF A P+ QQ + + GI T + P ++ +
Sbjct: 244 QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS-----GATAENVPVEQIV--ENN 296
Query: 204 RVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVP 255
+ +TPQ+L +++ GT + ++ DE H + + Y + + S P
Sbjct: 297 DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGP 356
Query: 256 VQLRILALTATPG-----SKQQTIQHI------IDNLYISTLEYRNESDQDVS------- 297
+ +++ LTA+ G + + + +I +D I+T+++ E + V
Sbjct: 357 LP-QVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFF 415
Query: 298 SYVHNR---KIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLL 354
V +R K + I ++ ++ + RI L + +QNR++ T +
Sbjct: 416 RKVESRISDKFKYIIAQLMRDTESLAKRI-------CKDLENLSQIQNREFGTQKYEQWI 468
Query: 355 NSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLE 406
+ K + Q+ + E+ + LY H+R+ ++S H ++ A + L+
Sbjct: 469 VTVQK-----ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLK 523
Query: 407 EKLKQGSFARFMSKNEDIRKV---KLLMQQSISH--GAQSPKLSKMLEVLVDHFKTKDPK 461
+ A F +D+ + KL +S+S ++PKL + +L + + +P+
Sbjct: 524 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL-NPE 582
Query: 462 HSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
+ I+F R V + N + L +K G+ + G + Q+ +L+ F+
Sbjct: 583 -TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 641
Query: 520 AGG-YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
A G +N+++ATS+ +EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 642 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 687
>gi|347447734|pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 114/512 (22%), Positives = 227/512 (44%), Gaps = 80/512 (15%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R+YQ + A+ NT++ PTG GKT ++ ++ + + FP G K+VF A P+
Sbjct: 14 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 73
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ + + GI T + P ++ + + +TPQ+L +++
Sbjct: 74 EQQKSVFSKYFERHGYRVTGIS-----GATAENVPVEQIV--ENNDIIILTPQILVNNLK 126
Query: 219 SGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATPG-- 268
GT + ++ DE H + + Y + + S P+ +++ LTA+ G
Sbjct: 127 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP-QVIGLTASVGVG 185
Query: 269 ---SKQQTIQHI------IDNLYISTLEYRNESDQDVS-------SYVHNR---KIELIE 309
+ + + +I +D I+T+++ E + V V +R K + I
Sbjct: 186 DAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 245
Query: 310 VEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLP 369
++ ++ + RI L + +QNR++ T + + K +
Sbjct: 246 AQLMRDTESLAKRI-------CKDLENLSQIQNREFGTQKYEQWIVTVQK-----ACMVF 293
Query: 370 QIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLEEKLKQGSFARFMSKN 421
Q+ + E+ + LY H+R+ ++S H ++ A + L++ A F
Sbjct: 294 QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 353
Query: 422 EDIRKV---KLLMQQSISH--GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVR 476
+D+ + KL +S+S ++PKL + +L + + +P+ + I+F R V
Sbjct: 354 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL-NPE-TITILFVKTRALVD 411
Query: 477 DIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIVATSIGE 533
+ N + L +K G+ + G + Q+ +L+ F+A G +N+++ATS+ +
Sbjct: 412 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 471
Query: 534 EGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 472 EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 502
>gi|312079013|ref|XP_003141990.1| hypothetical protein LOAG_06406 [Loa loa]
Length = 744
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 127/543 (23%), Positives = 229/543 (42%), Gaps = 78/543 (14%)
Query: 91 HVQIDA-EAAKTWIYPVNVPV-RDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNF 147
H I A +AAK IY V + R YQ + + A NTL+ PTG GKT++AA + N
Sbjct: 35 HFPISASDAAKDDIYEGEVIILRKYQEELAQPAYNGRNTLICAPTGTGKTVVAASIARNH 94
Query: 148 FRWFPDG----KIVFAAPSRPLVMQQIEACHNIVGIPQEW-TIDMTGQISPTKRASFWKT 202
KI F + + QQ + VG W + ++G T A
Sbjct: 95 LIMGRKNNLHTKISFFVTNTTFLEQQTKCFEKFVG--HRWKVVFLSGITVNTPIAETIAA 152
Query: 203 KRVFFVTPQVLEKDIQSGTC--------LMKYLVCLVIDEAHRATGNYAYCTAIRELMSV 254
+ +TPQ++ + TC + + DEAH GN+ Y + +
Sbjct: 153 YDLIVITPQLIVNLL--NTCNEDNGLPFSLSSFSLMFFDEAHHTDGNHPYNVIMNNYHDM 210
Query: 255 PVQLRIL---------ALTATPG-----SKQQTIQHIID---NLYISTLEYRNESDQDVS 297
++L LTA+ G + + +++ I NL I+ L Y +E+ ++
Sbjct: 211 KHAGKVLDGKRLPQVVGLTASLGIGNAQNTSEAVEYFIKICANLDITVLSYVHENIDELR 270
Query: 298 SY--VHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLN 355
++ + + +L+ + +V + I ++ R + L I R + +
Sbjct: 271 AFTSIAADETKLVASNVTTYSVAVG--ILDLFRRFEGILDRIA----RSVSISDKIHEPS 324
Query: 356 SRDKFRQAPPPNLPQIKFGEV-EAYFGALIT-------------------LYHIRRLLSS 395
+++ R+ P P KF +V E +F L+ L I L S
Sbjct: 325 NQEMLRRLQNP--PHDKFSKVYETWFSQLLVKFVPVAKLEKENRFLIMTCLQFIGILFRS 382
Query: 396 --HGIR-PAYEMLEEKLKQGSFARFMSKNEDIRKVKLL-MQQSISHGAQSPKLSKMLEVL 451
H I P+Y + + + R + E + ++ ++ + + A + +++L L
Sbjct: 383 LEHYIHFPSYVAKKYFENEFNLVRHTANQELVDIMQACPLKTVVGNNADNELYNELLREL 442
Query: 452 VDHFKTKDPKHSRVIIF---SNFRGSVRDIMNALATIGDLVKATEFI-GQSSGKASKGQS 507
F + K R I+F +F G + + +N ++ L ++FI G ++ + GQS
Sbjct: 443 HGQFAKQ--KDGRAIVFVATRDFAGQLSEELNKDESLQMLDIKSDFITGINASGENGGQS 500
Query: 508 QKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH 567
Q+ +L +F +G ++ ATS+ EEG+DI + +LVI +D + + +QR GR GR
Sbjct: 501 INQQRDILARFTSGDIKILCATSVAEEGIDIQKCNLVIKYDYVTNEIAHVQRRGR-GRAA 559
Query: 568 DGR 570
+ R
Sbjct: 560 NSR 562
>gi|452988240|gb|EME87995.1| hypothetical protein MYCFIDRAFT_104430, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 1360
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 129/512 (25%), Positives = 213/512 (41%), Gaps = 83/512 (16%)
Query: 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIA-AVVIYNFFRWFPDGKIVFAAPSRPLV 166
+ +R YQ + + ++ N +VA+ TG GKT IA A + R D + F PS+ L
Sbjct: 1 IKLRSYQTEMLEASVQKNIIVAMDTGSGKTHIALARIRVELER--NDKLVWFLTPSKTLA 58
Query: 167 MQQIEACHNIVG--IPQEWTIDMTGQISPTKRA--SFWKTK----RVFFVTPQVLEKDIQ 218
QQ H ++ + T +TG + K + W R+ TP +L +
Sbjct: 59 EQQ----HQVLSAELSGYGTRLLTGADACDKWSDQGLWTAALTNVRLVVATPAILLDALT 114
Query: 219 SGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR------ILALTATP----- 267
M L V DEAH T + +I +L P + R IL L+A+P
Sbjct: 115 HAFMHMTRLALCVFDEAHHCTKKHPM-NSIMQLFYRPARERGESVPHILGLSASPHLPEA 173
Query: 268 ---GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM---GQEAVEINN 321
++TI+ ++ + ++ ++R E D ++VH ++ I G ++
Sbjct: 174 AAADHVRRTIESNLNAITVTPKQHRRELD----TFVHPPDVQNIVYTAPSGGALPGRLST 229
Query: 322 RIWEVIRPY-----------------TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAP 364
+ + R Y SR + R L + L+ R F
Sbjct: 230 ALAYLTRTYDLSTDPYVLELTEQDDERSRKQLQKTMMKRKTYCLDQLRALDIRAGFL--- 286
Query: 365 PPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDI 424
L Q+ + Y A I + L+S + P L EK +Q AR + I
Sbjct: 287 ---LEQLGASMADWYVAACIRRFRAG-LMSECIVLPD---LSEKERQ-HLARIFDR---I 335
Query: 425 RKVKLLMQQSISHGAQ-SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFR---GSVRDIMN 480
R+ L ++G+ + K +++LE+L+ H DP R IIF R ++ + +
Sbjct: 336 RE--LAPATPDTNGSDITAKATELLELLLKH---ADPS-LRGIIFVEQRVLVTALAEWLR 389
Query: 481 ALATIGDLVKATEFIGQSSGKASKGQSQKV-----QQAVLEKFRAGGYNVIVATSIGEEG 535
L + D + F+G S+ K + Q LE FR G N++VAT++ EEG
Sbjct: 390 GLPQLNDQYQIAAFVGTSTSTNRKISVADLVTLQDQARDLEAFRRGEKNLMVATNVLEEG 449
Query: 536 LDIMEVDLVICFDANVSPLRMIQRMGRTGRKH 567
+DI +LVICFD + + +QR GR ++H
Sbjct: 450 IDISACNLVICFDPPQNLVSFVQRRGRARQQH 481
>gi|403304470|ref|XP_003942819.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 1
[Saimiri boliviensis boliviensis]
Length = 678
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 125/519 (24%), Positives = 204/519 (39%), Gaps = 116/519 (22%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQREVITPALEGKNIIIWLPTGAGKTRAAAYVARQHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + WT+ ++G + P RA F R + T Q+L+ + S
Sbjct: 63 HGEEFSRM--LDGRWTMTTLSGDVGP--RAGFGHLARCHDLLICTAQLLQMALTSPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSKQQT-- 273
+ +V+DE H + Y + + + +Q ++L LTA+PG+ +
Sbjct: 119 HVELTAFSLIVVDECHHTHKDTVYNVIMSRYLELKLQRARPLPQVLGLTASPGTGGASKL 178
Query: 274 ---IQHIID---NL----------YISTLEYRNES-----------DQDVSSYVHNRKIE 306
I H++ NL Y L+ ++ QD + + ++
Sbjct: 179 DGAINHVLQLCANLDTWCIMSPQNYFPQLQEHSQQPCKQYDLCQRRSQDPFGDLLKKLMD 238
Query: 307 LI--EVEMGQEAVEINNRIWEVIRPYTSRLSAI-GLLQNRDY--------------QTLS 349
I +EM + + + + +E S +A+ GLL+ R Y T+
Sbjct: 239 QIHDHLEMPELSRDFGKQTYEQQVVKLSETAALAGLLEQRVYALHLRRYNDALLIHDTVR 298
Query: 350 PVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY-HIRRLLSSHGIR-PAYEMLEE 407
VD L + F Q QI E + AL + ++ L++HG+ P EMLE
Sbjct: 299 AVDALAALQSFYQREHATKTQILCA--ERWLLALFNDHKNVLAHLATHGLENPKLEMLE- 355
Query: 408 KLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467
K+L +Q F++ D R II
Sbjct: 356 --------------------KILQKQ---------------------FRSSDS--PRGII 372
Query: 468 FSNFRGSVRDIMNALATIGDL----VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGY 523
F+ R S ++ L L ++A IG + S +QK QQ V+ FR+G
Sbjct: 373 FTRTRQSAHSLLLWLQQQPGLRTVDIRAQLLIGSGNSSQSTHMTQKDQQEVIRNFRSGTL 432
Query: 524 NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
N++VATS+ EEGLDI + ++V+ + + + M+Q GR
Sbjct: 433 NLLVATSVAEEGLDIPQCNVVVRYGLLTNEISMVQARGR 471
>gi|213408108|ref|XP_002174825.1| dicer [Schizosaccharomyces japonicus yFS275]
gi|212002872|gb|EEB08532.1| dicer [Schizosaccharomyces japonicus yFS275]
Length = 1384
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 112/489 (22%), Positives = 203/489 (41%), Gaps = 79/489 (16%)
Query: 110 VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW------FPDGKI-VFAAPS 162
+R+YQ A+ NTL+ + TG GKTL+A +I +I +F P
Sbjct: 20 LRNYQEVAYNIAIKQNTLLVMNTGAGKTLLAIKLIEYVLEQENSTCEKTSKRISIFLVPK 79
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQ 218
PLV QQ + + P G+IS + + K V VT +L + +
Sbjct: 80 VPLVEQQADYVQTQLNRP---VGRFCGEISNLYHDNVFAEKFMKNDVVVVTGGLLFECLS 136
Query: 219 SGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP-------VQLRILALTATP--GS 269
G + + L+ DE H A+ + Y ++ P + R+ +TA+P G+
Sbjct: 137 KGFIKLSDVNLLIFDECHHASKDDVYVRIMKYFYHEPLREHPETIMPRVFGMTASPLMGN 196
Query: 270 KQQTIQHI--IDNLYISTLEYRNESDQDVSSYVHNRKIELIE--VEMGQEAVEINNRIWE 325
K + ++++Y S L +D+D+ + + K +++ +E ++++R W+
Sbjct: 197 KWALEKEFNKLEDIYDSKLCII--TDEDLGKELRSPKTFILQYSIEDFSTQSKVSDRFWK 254
Query: 326 VIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALIT 385
+ + D+ +Q + + E+ +FG
Sbjct: 255 LTENF---------------------------DRLKQIITRVVTET--VELGLWFGDYSW 285
Query: 386 LYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLS 445
+ +R L + R + ++ + F + E++RK LL + S + PKL+
Sbjct: 286 QFFLRHALKKYDAR---RLRGAEVPKEEVLAFEALQEEVRKANLL---TTSKQLRKPKLN 339
Query: 446 K---------MLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEF 494
+ + L + F T +RVIIF R ++ D ++
Sbjct: 340 GIDVTNKVIILYKFLRNLFATNST--ARVIIFVE-RKVTAFLLKLFFDKIDFEGIRVESL 396
Query: 495 IGQSSGKASKGQ-SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
+G S +A Q S K+Q+ V+ +F+ G NV+VAT+I EEGLDI D+V F +
Sbjct: 397 VGNGSNQAGDEQMSYKLQKEVIRRFKHGSANVLVATAIAEEGLDIPSCDVVFRFSLCKTA 456
Query: 554 LRMIQRMGR 562
+++IQ GR
Sbjct: 457 IQLIQSKGR 465
>gi|363992266|gb|AEW46678.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Pteropus alecto]
Length = 929
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 110/492 (22%), Positives = 218/492 (44%), Gaps = 64/492 (13%)
Query: 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLVMQQIEACHNIVGIPQ 181
NT++ PTG GKT ++ ++ + + FP G K+VF A P+ QQ
Sbjct: 258 NTIICAPTGCGKTFVSLLICEHHLQKFPQGQKGKVVFFAVQVPVYEQQKSVFSKYFERRG 317
Query: 182 EWTIDMTGQISPTKRA-SFWKTKRVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRAT 239
++G + + + +TPQ+L +++GT + ++ DE H +
Sbjct: 318 YKVSGISGATAENVSVEQIIEDNDIIILTPQILVNSLKNGTVPSLSVFTLMIFDECHNTS 377
Query: 240 GNYAYCTAIRELM---------SVPVQLRILALTATPG-----SKQQTIQHIID---NLY 282
++ Y + + S+P +++ LTA+ G S + +++I +L
Sbjct: 378 KHHPYNMIMFNYLDQKLGGSSDSLP---QVVGLTASVGVGDAKSTGEALEYICKLCASLD 434
Query: 283 ISTLEYRNESDQDVSSYVHN-----RKIE--------LIEVEMGQEAVEINNRIWEVIRP 329
IS + ++ +++ V+ RK+E I ++ +EA + I++ +
Sbjct: 435 ISVVATVKDNLEELEEVVYKPQKFFRKVESRTTDRFKCIISQLMKEAESLAKSIFDTLGT 494
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY-- 387
T L +QNR++ T + + K + +P + E+ + LY
Sbjct: 495 IT--LGNFSQIQNRNFGTQKYEQWIVAVQK--KCMVLKMPD---KDEESRICKALFLYTS 547
Query: 388 HIRR-----LLSSHG-IRPAYEMLEEKLKQGSFARFMSKNEDI-----RKVKLLMQQSIS 436
H+R+ ++S H ++ A + L++ + A F +D+ K++ L S+
Sbjct: 548 HLRKFNDALIISEHARMKDALDYLKDFFRNVRTAGFDETEQDLTRRFEEKLQELESISMD 607
Query: 437 HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEF 494
++PKL + VL + + +P+ +R I+F R V + + L +K
Sbjct: 608 PSNENPKLKDLCFVLQEEYHL-NPE-TRTILFVKTRALVDALKKWIEENPKLSFLKPGIS 665
Query: 495 IGQSSGKASKGQSQKVQQAVLEKFRAGGYN-VIVATSIGEEGLDIMEVDLVICFDANVSP 553
G+ K + G + Q+ VL F+ G N +++ATS+ +EG+DI + +LVI ++ +
Sbjct: 666 TGRGRTKQNIGMTLPAQKDVLHTFKTSGDNKILIATSVADEGIDIAQCNLVILYEYVGNV 725
Query: 554 LRMIQRMGRTGR 565
++MIQ GR GR
Sbjct: 726 IKMIQTRGR-GR 736
>gi|297684253|ref|XP_002819761.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 isoform 2
[Pongo abelii]
Length = 925
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 113/512 (22%), Positives = 226/512 (44%), Gaps = 80/512 (15%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R+YQ + A+ NT++ PTG GKT ++ ++ + + FP G K+VF A P+
Sbjct: 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ + + GI T + P ++ + + +TPQ+L +++
Sbjct: 304 EQQKSVFSKYFERHGYRVTGIS-----GATAENVPVEQIV--ENNDIIILTPQILVNNLK 356
Query: 219 SGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATPG-- 268
GT + ++ DE H + + Y + + S P+ +++ LTA+ G
Sbjct: 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP-QVIGLTASVGVG 415
Query: 269 ---SKQQTIQHI------IDNLYISTLEYRNESDQDVSSYVHN--RKIE--------LIE 309
+ + + +I +D I+T+++ E + V RK+E I
Sbjct: 416 DAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDTFKYII 475
Query: 310 VEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLP 369
++ ++ + RI L + +QNR++ T + + K +
Sbjct: 476 AQLMRDTESLAKRI-------CKDLENLSQIQNREFGTQKYEQWIVTVQK-----ACMVF 523
Query: 370 QIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLEEKLKQGSFARFMSKN 421
Q+ + E+ + LY H+R+ +++ H ++ A + L++ A F
Sbjct: 524 QMPDKDEESRICKALFLYTSHLRKYNDALIINEHARMKDALDYLKDFFSNVRAAGFDEIE 583
Query: 422 EDIRKV---KLLMQQSISH--GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVR 476
+D+ + KL +S+S ++PKL + +L + + +P+ + I+F R V
Sbjct: 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL-NPE-TITILFVKTRALVD 641
Query: 477 DIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIVATSIGE 533
+ N + L +K G+ + G + Q+ +L+ F+A G +N+++ATS+ +
Sbjct: 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKANGNHNILIATSVAD 701
Query: 534 EGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 702 EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
>gi|393909534|gb|EFO22079.2| hypothetical protein LOAG_06406 [Loa loa]
Length = 989
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 127/543 (23%), Positives = 229/543 (42%), Gaps = 78/543 (14%)
Query: 91 HVQIDA-EAAKTWIYPVNVPV-RDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNF 147
H I A +AAK IY V + R YQ + + A NTL+ PTG GKT++AA + N
Sbjct: 243 HFPISASDAAKDDIYEGEVIILRKYQEELAQPAYNGRNTLICAPTGTGKTVVAASIARNH 302
Query: 148 FRWFPDG----KIVFAAPSRPLVMQQIEACHNIVGIPQEW-TIDMTGQISPTKRASFWKT 202
KI F + + QQ + VG W + ++G T A
Sbjct: 303 LIMGRKNNLHTKISFFVTNTTFLEQQTKCFEKFVG--HRWKVVFLSGITVNTPIAETIAA 360
Query: 203 KRVFFVTPQVLEKDIQSGTC--------LMKYLVCLVIDEAHRATGNYAYCTAIRELMSV 254
+ +TPQ++ + TC + + DEAH GN+ Y + +
Sbjct: 361 YDLIVITPQLIVNLL--NTCNEDNGLPFSLSSFSLMFFDEAHHTDGNHPYNVIMNNYHDM 418
Query: 255 PVQLRIL---------ALTATPG-----SKQQTIQHIID---NLYISTLEYRNESDQDVS 297
++L LTA+ G + + +++ I NL I+ L Y +E+ ++
Sbjct: 419 KHAGKVLDGKRLPQVVGLTASLGIGNAQNTSEAVEYFIKICANLDITVLSYVHENIDELR 478
Query: 298 SY--VHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLN 355
++ + + +L+ + +V + I ++ R + L I R + +
Sbjct: 479 AFTSIAADETKLVASNVTTYSVAVG--ILDLFRRFEGILDRIA----RSVSISDKIHEPS 532
Query: 356 SRDKFRQAPPPNLPQIKFGEV-EAYFGALIT-------------------LYHIRRLLSS 395
+++ R+ P P KF +V E +F L+ L I L S
Sbjct: 533 NQEMLRRLQNP--PHDKFSKVYETWFSQLLVKFVPVAKLEKENRFLIMTCLQFIGILFRS 590
Query: 396 --HGIR-PAYEMLEEKLKQGSFARFMSKNEDIRKVKLL-MQQSISHGAQSPKLSKMLEVL 451
H I P+Y + + + R + E + ++ ++ + + A + +++L L
Sbjct: 591 LEHYIHFPSYVAKKYFENEFNLVRHTANQELVDIMQACPLKTVVGNNADNELYNELLREL 650
Query: 452 VDHFKTKDPKHSRVIIF---SNFRGSVRDIMNALATIGDLVKATEFI-GQSSGKASKGQS 507
F + K R I+F +F G + + +N ++ L ++FI G ++ + GQS
Sbjct: 651 HGQFAKQ--KDGRAIVFVATRDFAGQLSEELNKDESLQMLDIKSDFITGINASGENGGQS 708
Query: 508 QKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH 567
Q+ +L +F +G ++ ATS+ EEG+DI + +LVI +D + + +QR GR GR
Sbjct: 709 INQQRDILARFTSGDIKILCATSVAEEGIDIQKCNLVIKYDYVTNEIAHVQRRGR-GRAA 767
Query: 568 DGR 570
+ R
Sbjct: 768 NSR 770
>gi|74215044|dbj|BAE33508.1| unnamed protein product [Mus musculus]
Length = 733
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 118/517 (22%), Positives = 214/517 (41%), Gaps = 91/517 (17%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLV 166
R+YQ + A NT++ PTG GKT ++ ++ + + FP GK+VF A P+
Sbjct: 245 RNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVY 304
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ +NI I + ++ Q + + +TPQ+L ++
Sbjct: 305 EQQATVFSRYFERLGYNIASISGATSDSVSVQ-------HIIEDNDIIILTPQILVNNLN 357
Query: 219 SGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELMS---------VPVQLRILALTATPG 268
+G + ++ DE H + N+ Y + + +P +++ LTA+ G
Sbjct: 358 NGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLP---QVVGLTASVG 414
Query: 269 -----SKQQTIQHI------IDNLYIST-------LEYRNESDQDVSSYVHNRKIELIEV 310
+ ++ +QHI +D I+T LE Q +S V +R +
Sbjct: 415 VGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKC 474
Query: 311 EMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS----------PVDLLNSRDKF 360
+ Q E ++ + + L + +QNR++ T + DK
Sbjct: 475 IISQLMKETE----KLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKE 530
Query: 361 RQAPPPNLPQIKFGEVEAYFGALI---------TLYHIRRLLSSHGIR-PAYEMLEEKLK 410
++ + + Y ALI L +++ H +R A++ E +L
Sbjct: 531 EESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFF--HDVREAAFDETERELT 588
Query: 411 QGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSN 470
+ RF K E++ KV S ++PKL + VL + + K ++ I+F
Sbjct: 589 R----RFEEKLEELEKV------SRDPSNENPKLRDLYLVLQEEYHLK--PETKTILFVK 636
Query: 471 FRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIV 527
R V + + L +K G+ + G + Q+ VLE FRA G N+++
Sbjct: 637 TRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILI 696
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTG 564
ATS+ +EG+DI E +LVI ++ + ++MIQ G +G
Sbjct: 697 ATSVADEGIDIAECNLVILYEYVGTVIKMIQTRGESG 733
>gi|358380675|gb|EHK18352.1| hypothetical protein TRIVIDRAFT_47151 [Trichoderma virens Gv29-8]
Length = 1386
Score = 80.5 bits (197), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 136/558 (24%), Positives = 215/558 (38%), Gaps = 116/558 (20%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV-FAAPSRPLVMQQ 169
R YQ + + +L N +VA+ TG GKT +A + I + KIV F AP+ L QQ
Sbjct: 4 RAYQIEMLEQSLERNVIVAMDTGSGKTQVAVLRIKSELESCDPKKIVWFMAPTVSLCTQQ 63
Query: 170 IEACH-NIVGIPQEWTIDMTG--QISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKY 226
+ I +P + P + T RV TPQVL + M +
Sbjct: 64 KDVLKLQIPAVPMTLLAGNSAINAWGPEIWHTLLGTTRVVVSTPQVLLDALDHAYITMNH 123
Query: 227 LVCLVIDE--------------AHRATG----------NYAYCTAIRELMSVPVQLRILA 262
L LV DE AH G +Y C + SVP IL
Sbjct: 124 LALLVFDEGKNKTADTVCLIYIAHNCIGKNPGGRVMLNHYHPCKQVGG--SVP---SILG 178
Query: 263 LTATPG--------------------------------SKQQTIQHIIDNLYISTLEYRN 290
LTATP K+ TI+H+I N
Sbjct: 179 LTATPSIQSQPEDLEALELLLDATCISPTLHRDELLKCVKRPTIRHVI----------YN 228
Query: 291 ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSP 350
+DV + R + + +E+ ++ + I ++R T R Y T +
Sbjct: 229 PGREDVMTPTM-RSLNQVYLELD---IKEDPYIHYLLRDPTERNKRALAEAIEKYDTYTQ 284
Query: 351 VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410
N FR Q+ + Y I+ H+ R+ H + + + EEK
Sbjct: 285 ----NQMKSFRTRSKQICKQLGPWAADLYIEKAISA-HLNRVEGDHELPNQWWIDEEKKY 339
Query: 411 QGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSN 470
G R ++ V+ L + + S K+ K+L ++ ++P IIF
Sbjct: 340 LGQVYRRVN-------VQPLPKTPQTFDDISDKVDKLL---IELLSAEEPTVG--IIFVE 387
Query: 471 FRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEK--------FRAGG 522
R +V ++ L + + A IG G A+ +K +K FR G
Sbjct: 388 ERATV-TMLAELLRVNQAIMAKYKIGTMFGTAAYATRRKAMYEFGDKTDYKDLLNFRHGK 446
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFV 582
N+++ATS+ EEG+D+ +LVICFD + IQR GR RK D ++ V F
Sbjct: 447 INLLIATSVLEEGIDVPACNLVICFDTPTTSKSFIQRRGR-ARKRDSKL-------VIFF 498
Query: 583 EL---SIEQYVSRGKKVK 597
EL ++E+++++ +++K
Sbjct: 499 ELESPALEKWITKEEEMK 516
>gi|431902875|gb|ELK09090.1| Putative ATP-dependent RNA helicase DDX58 [Pteropus alecto]
Length = 929
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 109/492 (22%), Positives = 217/492 (44%), Gaps = 64/492 (13%)
Query: 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLVMQQIEACHNIVGIPQ 181
NT++ PTG GKT ++ ++ + + FP G K+VF A P+ QQ
Sbjct: 258 NTIICAPTGCGKTFVSLLICEHHLQKFPQGQKGKVVFFAVQVPVYEQQKSVFSKYFERRG 317
Query: 182 EWTIDMTGQISPTKRA-SFWKTKRVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRAT 239
++G + + + +TPQ+L +++GT + ++ DE H +
Sbjct: 318 YKVSGISGATAENVSVEQIIEDNDIIILTPQILVNSLKNGTVPSLSVFTLMIFDECHNTS 377
Query: 240 GNYAYCTAIRELM---------SVPVQLRILALTATPG-----SKQQTIQHIID---NLY 282
++ Y + + S+P +++ LTA+ G S + +++I +L
Sbjct: 378 KHHPYNMIMFNYLDQKLGGSSDSLP---QVVGLTASVGVGDAKSTGEALEYICKLCASLD 434
Query: 283 ISTLEYRNESDQDVSSYVHN-----RKIE--------LIEVEMGQEAVEINNRIWEVIRP 329
IS + ++ +++ V+ RK+E I ++ +E + I++ +
Sbjct: 435 ISVVATVKDNLEELEEVVYKPQKFFRKVESRTTDRFKCIISQLMKETESLAKSIFDTLGT 494
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY-- 387
T L +QNR++ T + + K + +P + E+ + LY
Sbjct: 495 IT--LGNFSQIQNRNFGTQKYEQWIVAVQK--KCMVLKMPD---KDEESRICKALFLYTS 547
Query: 388 HIRR-----LLSSHG-IRPAYEMLEEKLKQGSFARFMSKNEDI-----RKVKLLMQQSIS 436
H+R+ ++S H ++ A + L++ + A F +D+ K++ L S+
Sbjct: 548 HLRKFNDALIISEHARMKDALDYLKDFFRNVRTAGFDETEQDLTRRFEEKLQELESISMD 607
Query: 437 HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEF 494
++PKL + VL + + +P+ +R I+F R V + + L +K
Sbjct: 608 PSNENPKLKDLCFVLQEEYHL-NPE-TRTILFVKTRALVDALKKWIEENPKLSFLKPGIL 665
Query: 495 IGQSSGKASKGQSQKVQQAVLEKFRAGGYN-VIVATSIGEEGLDIMEVDLVICFDANVSP 553
G+ K + G + Q+ VL F+ G N +++ATS+ +EG+DI + +LVI ++ +
Sbjct: 666 TGRGRTKQNIGMTLPAQKDVLHTFKTSGDNKILIATSVADEGIDIAQCNLVILYEYVGNV 725
Query: 554 LRMIQRMGRTGR 565
++MIQ GR GR
Sbjct: 726 IKMIQTRGR-GR 736
>gi|406356427|gb|AFS34610.1| LGP2 [Ictalurus punctatus]
Length = 677
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 120/510 (23%), Positives = 215/510 (42%), Gaps = 82/510 (16%)
Query: 106 VNVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164
+ + +R YQ + + AL N+++ LPTG GKT A V P+GK+
Sbjct: 1 MEISLRPYQQEVVQVALRGENSIIWLPTGGGKTRAAVYVAKRHLETHPNGKVAVLVNKVH 60
Query: 165 LVMQQIEACHNIVGIPQEW------TIDMTGQISPTKRASFW----KTKRVFFVTPQVLE 214
LV Q + +E+ ++ M + F+ + + T Q+LE
Sbjct: 61 LVDQHFQ---------KEFRPHLGSSVKMVPISGDSNEKDFFGCVVRDSSLVICTAQILE 111
Query: 215 KDI----QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTA 265
+ +S + L+IDE H Y + + ++ +IL LTA
Sbjct: 112 NALINTEESKHVELTDFTLLIIDECHHTHKEGVYNKIMARYVRKKIERVKGLPQILGLTA 171
Query: 266 TPG-----SKQQTIQHII------DNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQ 314
+PG S I H++ D++ +ST Y E + V + N I
Sbjct: 172 SPGTGGAKSLDGAITHVLEICANLDSVIVSTKNYEAELKEAVPRPMKNYDI--------- 222
Query: 315 EAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFG 374
++ R W+ P+ L + L + ++ L L R+ Q ++ +++
Sbjct: 223 ----VDERYWD---PFGDHLKMMMKLIH-EFMMLDRKFTL--REMGTQEYEADVVELEKK 272
Query: 375 EVEAYFGALI-TLYHIRR----LLSSHGIR--PAYEMLEEKLKQGS------FARFMSKN 421
V+ L H+R+ LL + +R A +LEE + F++
Sbjct: 273 GVQEQNRLLARCALHLRKFNDALLINDTVRMVDALRLLEEFYTTETRNVLDITDEFLTGL 332
Query: 422 EDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNA 481
+ KV+LL Q + ++PKL ++ LVD FK ++ SR IIF+ R R + +
Sbjct: 333 FNENKVELL-QLASEASNENPKLERLQRTLVDQFKDEN---SRGIIFAKTREITRCLYDW 388
Query: 482 LATIGDL----VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLD 537
+ T +L ++A +G +G + +Q+ Q+ ++ FR G N++++TS+ EEGLD
Sbjct: 389 VRTNPELRRANIRAANLVG--AGTGATHMTQREQRDTIKTFREGELNLLISTSVAEEGLD 446
Query: 538 IMEVDLVICFDANVSPLRMIQRMGRTGRKH 567
I E ++VI + + + Q GR K+
Sbjct: 447 IPECNVVIRYGLLTNEIAQQQASGRARAKN 476
>gi|354459477|pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 117/527 (22%), Positives = 233/527 (44%), Gaps = 81/527 (15%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
+E + T +Y P R+YQ + A+ NT++ PTG GKT ++ ++ + + FP G
Sbjct: 1 SEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 59
Query: 155 ---KIVFAAPSRPLVMQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTK 203
K+VF A P+ Q + + GI T + P ++ +
Sbjct: 60 QKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGIS-----GATAENVPVEQIV--ENN 112
Query: 204 RVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVP 255
+ +TPQ+L +++ GT + ++ DE H + + Y + + S P
Sbjct: 113 DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGP 172
Query: 256 VQLRILALTATPG-----SKQQTIQHI------IDNLYISTLEYRNESDQDVS------- 297
+ +++ LTA+ G + + + +I +D I+T+++ E + V
Sbjct: 173 LP-QVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFF 231
Query: 298 SYVHNR---KIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLL 354
V +R K + I ++ ++ + RI L + +QNR++ T +
Sbjct: 232 RKVESRISDKFKYIIAQLMRDTESLAKRI-------CKDLENLSQIQNREFGTQKYEQWI 284
Query: 355 NSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLE 406
+ K + Q+ + E+ + LY H+R+ ++S H ++ A + L+
Sbjct: 285 VTVQK-----ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLK 339
Query: 407 EKLKQGSFARFMSKNEDIRKV---KLLMQQSISH--GAQSPKLSKMLEVLVDHFKTKDPK 461
+ A F +D+ + KL +S+S ++PKL + +L + + +P+
Sbjct: 340 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL-NPE 398
Query: 462 HSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
+ I+F R V + N + L +K G+ + G + Q+ +L+ F+
Sbjct: 399 -TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457
Query: 520 AGG-YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
A G +N+++ATS+ +EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 458 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 503
>gi|170064010|ref|XP_001867348.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167881455|gb|EDS44838.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 1122
Score = 79.7 bits (195), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 47/65 (72%)
Query: 507 SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
SQK Q A + FR+G N +VAT + EEG+D+ EVDL++CFD +P R +QR+GRTGR+
Sbjct: 16 SQKEQIATMRDFRSGLCNTLVATCVAEEGIDVGEVDLIVCFDIVKNPTRFVQRIGRTGRQ 75
Query: 567 HDGRI 571
GR+
Sbjct: 76 AVGRV 80
>gi|410978420|ref|XP_003995589.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 [Felis catus]
Length = 924
Score = 79.7 bits (195), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 110/505 (21%), Positives = 218/505 (43%), Gaps = 60/505 (11%)
Query: 108 VPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSR 163
V R+YQ + A NT++ PTG GKT ++ ++ + + FP G K+VF A
Sbjct: 240 VKPRNYQLELALPAKEGKNTIICAPTGCGKTFVSLLICEHHLKNFPQGQKGKVVFFAVQL 299
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRA-SFWKTKRVFFVTPQVLEKDIQSGTC 222
P+ QQ N ++G S + + +TPQ+L +++GT
Sbjct: 300 PVYEQQKSVFSNYFERLGYKVAGVSGATSENVSVKQIVENNDIIILTPQILVNSLKNGTI 359
Query: 223 -LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATPG-----S 269
+ ++ DE H ++ Y + + S P+ +++ LTA+ G S
Sbjct: 360 PSLSVFTLMIFDECHNTGKHHPYNMIMFNYLDQKLGGSSDPLP-QVIGLTASVGIGDAKS 418
Query: 270 KQQTIQHI------IDNLYISTLEYRNESDQDVS-------SYVHNRKIELIEVEMGQEA 316
+ +++I +D I+T++ E +++ V +R + + + Q
Sbjct: 419 TAEAVEYICRLCASLDTSVIATVKDNLEELEEIVYKPQKFFRKVESRTTDRFKCIISQLM 478
Query: 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEV 376
E + + + + I ++NR++ T + + K + Q+ +
Sbjct: 479 RETES----LAKSIFDEIEGISQIRNREFGTQKYEQWIVTVQK-----ACTVFQLPDKDE 529
Query: 377 EAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLEEKLKQGSFARFMSKNEDI---- 424
E+ + LY H+R+ +++ H ++ A + L++ A F +D+
Sbjct: 530 ESRICKALFLYTSHLRKYNDALIINEHARMKDALDYLKDFFTNVRAAGFDEIEQDLTRRF 589
Query: 425 -RKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALA 483
K++ L S+ ++PKL + +L + + +P+ SR I+F R V + +
Sbjct: 590 EEKLQKLESVSMDPSNENPKLKDLCFILQEEYHL-NPE-SRTILFVKTRALVDALKKWIE 647
Query: 484 TIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIVATSIGEEGLDIME 540
+L +K G+ + G + Q+ L+ FR G +++ATS+ +EG+DI E
Sbjct: 648 ENSELSFLKPGILTGRGKTNQNTGMTLPAQKCALDAFRTNGDKKILIATSVADEGIDIAE 707
Query: 541 VDLVICFDANVSPLRMIQRMGRTGR 565
+LVI ++ + ++MIQ GR GR
Sbjct: 708 CNLVILYEYVGNVIKMIQTRGR-GR 731
>gi|367035818|ref|XP_003667191.1| hypothetical protein MYCTH_2312762 [Myceliophthora thermophila ATCC
42464]
gi|347014464|gb|AEO61946.1| hypothetical protein MYCTH_2312762 [Myceliophthora thermophila ATCC
42464]
Length = 1475
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 125/502 (24%), Positives = 206/502 (41%), Gaps = 72/502 (14%)
Query: 106 VNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPL 165
V + R YQ + + +L N +VA+ TG GKT +A + I D F AP+ L
Sbjct: 77 VTMTARAYQLEMLEESLKKNVIVAMDTGSGKTQVAIMRIQAELE-RGDKIAWFLAPTVSL 135
Query: 166 VMQQIEACH-NIVGIPQEWTIDMTGQISPTKRASFWKT----KRVFFVTPQVLEKDIQSG 220
QQ E I G+ + + + + W R+ T Q+L +
Sbjct: 136 AEQQFETIRAQIPGVQSRLILGSDNVEAWSSKPGVWDAVLFNTRIIVSTYQILFDAVTHA 195
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR------ILALTATP-----GS 269
+ L +V+DEAH + GN +RE VP + R IL LTA+P +
Sbjct: 196 LVPLASLGIIVVDEAHHSKGNNPVARLMRE-HYVPNKARGLPVPHILGLTASPLMTSNLN 254
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA------------V 317
+ ++ +D + + ++R E V+ E+ + G A +
Sbjct: 255 DLEVLERTLDAVCKTPSKHREELMAQVN------HPEMKTISYGGAASLDDAAQPTPAML 308
Query: 318 EINNRIWEV-IR--PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFG 374
+ N E+ IR P+ L + R +TL V L +++ + ++ + +
Sbjct: 309 RLRNTCLELDIRQDPFVRHLLTDNTARGR--ETLKKV--LLTKETYSRSQMETFCR-RAW 363
Query: 375 EVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQS 434
EV FG Y+I R++SS +R + ++ + E RK+
Sbjct: 364 EVWKTFGPWAADYYIYRVISSF-LRGSDNPPSQEGDSLGDQEWAYLAEAFRKLD------ 416
Query: 435 ISHGAQSP-----KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT----- 484
AQ P +LS + L+D ++ + + IIF R SV + + LA
Sbjct: 417 ----AQPPPETPTELSPKVHALLDALESHE-GNPIGIIFVKERASVAVLSHILAVHPKTS 471
Query: 485 ----IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIME 540
+G +V + G+ + SQK L+ FR G N++VATS+ EEG+D+
Sbjct: 472 RRYRVGSMVGTSRVPGRR--RDILDLSQKDYLLALQAFRKGAINLLVATSVLEEGIDVPA 529
Query: 541 VDLVICFDANVSPLRMIQRMGR 562
+LVICFD + IQR GR
Sbjct: 530 CNLVICFDKLDNLKSFIQRRGR 551
>gi|339892124|gb|AEK21509.1| LGP2 [Gallus gallus]
Length = 674
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 6/127 (4%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL----ATIGDLVKATEFI 495
++P+LSK+ E+L +HF+ P SR I+F+ R S +++ L G ++A
Sbjct: 345 ENPRLSKLEEILQEHFQP--PGSSRGIVFTKTRQSAHSLLSWLQDTAGLCGQHIRAAVLT 402
Query: 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
G +KG +Q QQ V+ FR G N++ +TS+ EEGLDI E ++V+ + + +
Sbjct: 403 GSGHSNQAKGMTQNEQQDVITLFRYGELNLLFSTSVAEEGLDIPECNIVVRYGLMTNEIA 462
Query: 556 MIQRMGR 562
M+Q GR
Sbjct: 463 MVQAQGR 469
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 85/210 (40%), Gaps = 26/210 (12%)
Query: 113 YQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIE 171
YQ AL N++V LPTG GKT A V G++ LV Q +E
Sbjct: 6 YQLEAVAPALRGRNSIVWLPTGAGKTRAAVHVCRRHLEGRRGGRVAVLVNKVHLVQQHLE 65
Query: 172 ACHNIVGIPQEWTIDMTGQISPTKRASFW----KTKRVFFVTPQVLEKDIQSG----TCL 223
+++ +T + F+ K V T Q+L+ + SG
Sbjct: 66 KEFHVL----RDAFKVTAVSGDSSHKCFFGQLAKGSDVVICTAQILQNALLSGEEEARVE 121
Query: 224 MKYLVCLVIDEAHR----ATGNYAYCTAIRELMSVPVQL-RILALTATPGSKQQT----- 273
+ LVIDE H A N + +++ +S L +IL LTA+PG+ +T
Sbjct: 122 LTDFSLLVIDECHHTQKEAVYNKIMLSYLQKKLSGQRDLPQILGLTASPGTGGETSFEGA 181
Query: 274 IQHIID---NLYISTLEYRNESDQDVSSYV 300
++HI+ NL + E Q + S+V
Sbjct: 182 VEHILQICANLDTEVIASAQEHAQHLQSHV 211
>gi|363743602|ref|XP_003642879.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 [Gallus
gallus]
Length = 674
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 6/127 (4%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL----ATIGDLVKATEFI 495
++P+LSK+ E+L +HF+ P SR I+F+ R S +++ L G ++A
Sbjct: 345 ENPRLSKLEEILQEHFQP--PGSSRGIVFTKTRQSAHSLLSWLQDTAGLCGQHIRAAVLT 402
Query: 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
G +KG +Q QQ V+ FR G N++ +TS+ EEGLDI E ++V+ + + +
Sbjct: 403 GSGHSNQAKGMTQNEQQDVITLFRYGELNLLFSTSVAEEGLDIPECNIVVRYGLMTNEIA 462
Query: 556 MIQRMGR 562
M+Q GR
Sbjct: 463 MVQAQGR 469
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 85/210 (40%), Gaps = 26/210 (12%)
Query: 113 YQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIE 171
YQ AL N++V LPTG GKT A V G++ LV Q +E
Sbjct: 6 YQLEAVAPALRGRNSIVWLPTGAGKTRAAVHVCRRHLEGRRGGRVAVLVNKVHLVQQHLE 65
Query: 172 ACHNIVGIPQEWTIDMTGQISPTKRASFW----KTKRVFFVTPQVLEKDIQSGT----CL 223
+++ +T + F+ K V T Q+L+ + SG
Sbjct: 66 KEFHVL----RDAFKVTAVSGDSSHKCFFGQLAKGSDVVICTAQILQNALLSGEEEARVE 121
Query: 224 MKYLVCLVIDEAHR----ATGNYAYCTAIRELMSVPVQL-RILALTATPGSKQQT----- 273
+ LVIDE H A N + +++ +S L +IL LTA+PG+ +T
Sbjct: 122 LTDFSLLVIDECHHTQKEAVYNKIMLSYLQKKLSGQRDLPQILGLTASPGTGGETSFEGA 181
Query: 274 IQHIID---NLYISTLEYRNESDQDVSSYV 300
++HI+ NL + E Q + S+V
Sbjct: 182 VEHILQICANLDTEVIASAQEHAQHLQSHV 211
>gi|400595165|gb|EJP62972.1| RNase3 domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 1465
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/497 (23%), Positives = 196/497 (39%), Gaps = 63/497 (12%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK 155
+AA + + R+YQ + + A NT+V L TG GKTLIA +++ + + +
Sbjct: 49 GDAAAAEVSALMATPREYQNELFERAKSKNTIVVLDTGSGKTLIAIMLLRHVLEQELEDR 108
Query: 156 I--------VFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRA-SFWKTK--- 203
F L MQQ + H + G++ P +++ + W +
Sbjct: 109 ANGGTRKTAFFVVDKVALCMQQYQVIHATLPFS---VTKFYGELQPLEQSQTHWDAQFDE 165
Query: 204 -RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP--VQLRI 260
+ T Q+L + G M+ + L+ DE H A + Y ++ V+ RI
Sbjct: 166 NMIIVCTAQMLLDCLSHGFINMRQINLLIFDEVHHAKKEHPYAAIMKRYYPRDNNVKPRI 225
Query: 261 LALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEIN 320
L LTA+P +D TL+ +E +E M E ++
Sbjct: 226 LGLTASP----------VDT---GTLDIET-------------AVEKLESLMCSEIATVS 259
Query: 321 NRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVD-----LLNSRDKFRQAPPPNLPQIKF-G 374
+ + E +T R + R Y+ L V L D+F Q P ++F
Sbjct: 260 DAVLEA--GWTKREQKEKV---RLYKPLKDVKDCYTKLARDIDEFAQHVPQLAASVQFSA 314
Query: 375 EVEAYFGALITLYHIRRLLSSHGIR-PAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQ 433
++ + G + LL+ +R A ++ + K S+ R+ + + + ++ ++
Sbjct: 315 KIGSALGPWCADRFWQILLTDDLMRNMAVQLGKGKKTNFSYDRYDAASGALESLRPIIDH 374
Query: 434 ------SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV-RDIMNALATIG 486
S A S KL + E L F+ + V + F + D + T
Sbjct: 375 HRFAPASTDEDAISSKLVVLRETLCAAFEEESETKCLVFVDEQFMAMILADYFSQPGTAP 434
Query: 487 DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
+ A IG + A S + + L F+ G N + ATS+ EEGLDI DLVI
Sbjct: 435 QGMIADFMIGLAKSFAHANLSLRERMQKLNDFKHGNTNCLFATSVAEEGLDIPACDLVIR 494
Query: 547 FDANVSPLRMIQRMGRT 563
FD +S ++ IQ GR
Sbjct: 495 FDMCISAIQYIQSRGRA 511
>gi|402897212|ref|XP_003911664.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 [Papio anubis]
Length = 925
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/513 (22%), Positives = 223/513 (43%), Gaps = 80/513 (15%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPL 165
+R+YQ + A NT++ PTG GKTL++ ++ + + FP GK+VF A P+
Sbjct: 243 LRNYQLELALPAKKGKNTIICAPTGCGKTLVSVLICEHHLKKFPPGQKGKVVFFANQIPV 302
Query: 166 VMQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
QQ + + GI T + P ++ + + +TPQ+L ++
Sbjct: 303 YEQQESVFSKYFERLGYRVTGIS-----GATAENVPVEQIV--ENNDIIILTPQILVNNL 355
Query: 218 QSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATPG- 268
+ GT + ++ DE H + + Y + + S P+ +++ LTA+ G
Sbjct: 356 KKGTIPSLSVFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP-QVIGLTASVGV 414
Query: 269 ----SKQQTIQHI------IDNLYIST-------LEYRNESDQDVSSYVHNR---KIELI 308
+ + +I +D I+T LE Q V +R K + I
Sbjct: 415 GDAKDTDEALDYICKLCASLDASVIATVKDNLEELEQVVYKPQKFFRKVESRVSDKFKCI 474
Query: 309 EVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNL 368
++ ++ + RI L + +QNR++ T + + K +
Sbjct: 475 IAQLMRDTESLAKRI-------CKDLESFSQIQNREFGTQKYEQWIVTVQK-----ACMV 522
Query: 369 PQIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLEEKLKQGSFARFMSK 420
Q+ + E+ + LY H+R+ ++S H ++ A + L++ A F
Sbjct: 523 FQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARVKDALDYLKDFFSNVRAAGFDET 582
Query: 421 NEDIRKV---KLLMQQSISH--GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
+D+ + KL +S+S ++PKL + +L + + +P+ + I+F R V
Sbjct: 583 EQDLTQRFEEKLQELESVSRDPSNENPKLEDLRFILQEEYHL-NPE-TITILFVKTRALV 640
Query: 476 RDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIVATSIG 532
+ N + L +K G+ + G + Q+ +L+ F+ G +N+++ATS+
Sbjct: 641 DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKVNGDHNILIATSVA 700
Query: 533 EEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
+EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 701 DEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
>gi|407943766|pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/512 (22%), Positives = 226/512 (44%), Gaps = 80/512 (15%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R+YQ + A+ NT++ PTG GKT ++ ++ + + FP G K+VF A P+
Sbjct: 6 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 65
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
Q + + GI T + P ++ + + +TPQ+L +++
Sbjct: 66 EQNKSVFSKYFERHGYRVTGIS-----GATAENVPVEQIV--ENNDIIILTPQILVNNLK 118
Query: 219 SGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATPG-- 268
GT + ++ DE H + + Y + + S P+ +++ LTA+ G
Sbjct: 119 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP-QVIGLTASVGVG 177
Query: 269 ---SKQQTIQHI------IDNLYISTLEYRNESDQDVS-------SYVHNR---KIELIE 309
+ + + +I +D I+T+++ E + V V +R K + I
Sbjct: 178 DAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 237
Query: 310 VEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLP 369
++ ++ + RI L + +QNR++ T + + K +
Sbjct: 238 AQLMRDTESLAKRI-------CKDLENLSQIQNREFGTQKYEQWIVTVQK-----ACMVF 285
Query: 370 QIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLEEKLKQGSFARFMSKN 421
Q+ + E+ + LY H+R+ ++S H ++ A + L++ A F
Sbjct: 286 QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 345
Query: 422 EDIRKV---KLLMQQSISH--GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVR 476
+D+ + KL +S+S ++PKL + +L + + +P+ + I+F R V
Sbjct: 346 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL-NPE-TITILFVKTRALVD 403
Query: 477 DIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIVATSIGE 533
+ N + L +K G+ + G + Q+ +L+ F+A G +N+++ATS+ +
Sbjct: 404 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 463
Query: 534 EGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 464 EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 494
>gi|254692316|emb|CAY86112.1| retinoic acid-inducible gene-I [Cyprinidae sp. EPC]
Length = 940
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/507 (22%), Positives = 219/507 (43%), Gaps = 61/507 (12%)
Query: 110 VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD-GKIVFAAPSRPLVMQ 168
+R+YQ +T A NT++ PTG GKT++A + N + P KIVF A + Q
Sbjct: 256 LREYQKELTDAAEGQNTIICAPTGCGKTIVAVAICENHLKKRPGRAKIVFLATKVDVYEQ 315
Query: 169 QIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC-LMK 225
Q + H P M G ++ + R +T + +T Q+L +QSG +
Sbjct: 316 QYKLFKEHFSFTDPNIKVTGMCGDMALSVRL-LIETHDIVVLTAQILVNALQSGEVPSLD 374
Query: 226 YLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL------RILALTATPG--------SKQ 271
L +++DE H TG + Y + + + +I+ LTA+ G +
Sbjct: 375 MLSLILLDECHNTTGKHPYNNIMTRYLDTKLSSSTHSLPQIVGLTASVGIGTFKDRTEAE 434
Query: 272 QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQ-----EAVEINNRIWEV 326
I + NL + + ++ ++VH + E +V +E R E
Sbjct: 435 NNILQLCANLDTRVIATVTKHLDELRTFVHTPEKEFFDVPRHTCDPFIRIIENIMRNIEH 494
Query: 327 IRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITL 386
+ T + ++ +QN +Y + + S K + +K + E +
Sbjct: 495 LAKNTYNIESLSNIQNCEYGSQKYEQWIVSVQK-----SCRVIAMKNTDEERRICRDLYN 549
Query: 387 Y--HIRR----LLSSHGIRP--AYEMLE---EKLKQGSF---ARFMSKNEDIRKVKLLMQ 432
Y H+R+ L+ + R + + L+ E+++ F R ++ D ++ +LL
Sbjct: 550 YTEHLRKYNDALIINEDARTKDSLDFLDGFFEQVRNAGFDETERRLTALYDSQRPQLLFL 609
Query: 433 QSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKAT 492
+ G Q+PKL ++ +L + + D +R ++F R + +A+ D +
Sbjct: 610 A--TEGQQNPKLEELRFILEEEYHNND--QTRTVLFVRTRA----LADAMKKWIDDTDSL 661
Query: 493 EFI--GQSSGKASKGQ------SQKVQQAVLEKFRAGGYN-VIVATSIGEEGLDIMEVDL 543
+F+ G GK K + ++ VL+ F++ + +++ATS+ +EG+DI + +L
Sbjct: 662 KFLMPGVLIGKGRKSNFNGSVMTPTNKKGVLDSFKSSDQSKILIATSVADEGIDIPQCNL 721
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGR 570
V+ ++ + ++M+Q GR GR R
Sbjct: 722 VLMYEYVGNVVKMVQVRGR-GRAQGSR 747
>gi|390331517|ref|XP_003723297.1| PREDICTED: probable ATP-dependent RNA helicase DDX58-like
[Strongylocentrotus purpuratus]
Length = 1116
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 118/519 (22%), Positives = 211/519 (40%), Gaps = 45/519 (8%)
Query: 112 DYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFF--RWFPDG------KIVFAAPS 162
DYQ + A N +V LPTG GKT +A +I F R+ K VF
Sbjct: 394 DYQEEVLTPAWKGQNAMVVLPTGTGKTEVAIALINRLFSARYHVGATNHRRQKSVFVVNK 453
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
PLV QQ + C + E +++ S T + +T QVL ++
Sbjct: 454 VPLVKQQKDRCLKYLRGKCEVAGTSGEELNDASLDSIIDTNDITVLTAQVLINALKDKNT 513
Query: 223 LMKY--LVCLVIDEAHRATGNYAYCTAI---RELMSVPVQL---RILALTATPG------ 268
++ + LV+DE H + Y + R+L +L +IL LTA+PG
Sbjct: 514 KLQLSDIALLVLDECHHCQKSDPYNVLMAMYRDLKLNSPKLPRPQILGLTASPGVGDSKN 573
Query: 269 --SKQQTIQHIIDNL---------YISTLEYRNESDQDVSSYVHNRKIE---LIEVEMGQ 314
++ I + NL Y L R+ S Q++ + R +E E+ +
Sbjct: 574 IVEAERYITKLCANLDCRISRPKIYADQLNARSNSPQEILIIMKGRPLEDPFFREINVIM 633
Query: 315 EAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFG 374
E +E ++ E R L +R +LN + K +Q + +
Sbjct: 634 ERIEAKIKLSEAGRALMKENDEFTKLVSRRGTQSYEQGVLNLKKKIQQKIENRDNRRELM 693
Query: 375 EVEAYFGALI-TLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQ 433
Y +L+ R +S I + ++E+ + S ++ ++K+ +
Sbjct: 694 TCVNYLREYNNSLFINRDARTSDAISYMEDYIKEEERSNPSG---SADKSLKKMFRDNLE 750
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKH--SRVIIFSNFRGSVRDIMNALATIGDLVKA 491
+++ A ++ +L L K ++ S IIF+ R S + + + DL
Sbjct: 751 TLNRIANLHAINPVLNELGRQLKKAYARNEESLSIIFTKTRASAKALEKWINEDPDLNHI 810
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
G+ +G ++G + Q L+ F+ Y ++VATS+ EEGLDI E ++V ++
Sbjct: 811 NA--GKLTGGGNQGMTSTEQNRNLQLFKDKKYRILVATSVAEEGLDITECNMVFRYNYVT 868
Query: 552 SPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYV 590
S + +Q GR+ K G+I I ++Q + ++ +
Sbjct: 869 SDIGYVQTKGRSRSKFSGKIFVIVNSDLQLQDRELKNII 907
>gi|242039323|ref|XP_002467056.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor]
gi|241920910|gb|EER94054.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor]
Length = 1586
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 116/482 (24%), Positives = 189/482 (39%), Gaps = 120/482 (24%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK-----IVFAAPSRPL 165
R YQ + AL NT+ L TG GKT++A ++ G+ +VF AP+ L
Sbjct: 27 RGYQVEVFAAALRGNTIAVLDTGSGKTMVAIMLAREHVLRARAGETPRRIVVFLAPTVHL 86
Query: 166 VMQQIEA-----------CHNIVGIPQEWTIDMTGQISPTKRASFWK----TKRVFFVTP 210
V QQ E CH G+ +W A WK +K + +TP
Sbjct: 87 VHQQFEVIREYTDLDAVECHGASGVG-DWN------------AKRWKEAIGSKEIVVMTP 133
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR--ILALTATPG 268
Q+L ++ M + L+ DE HRA GN+ Y ++E + + R I +TA+P
Sbjct: 134 QILLDALRHAFLTMCVMSLLIFDECHRACGNHPYSRIMKEFY-IDSEWRPAIFGMTASPV 192
Query: 269 SKQ--QTIQ---------HIIDNLYISTLEYRNESDQ-DVSSYVHNRKIELIEVEMGQEA 316
SK+ TI+ ++ N + +E RNE + + + N+ + ++
Sbjct: 193 SKRGASTIEDCEAQIAQLELVLNAKVYIVEDRNELESFSTGAKIVNKYYDPYLFDLDDLE 252
Query: 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEV 376
++ EV++ Y ++ +G +S D NL Q+
Sbjct: 253 SKLQMLFEEVVKIYNESINTVG----------------DSEDCLFSKASLNL-QV----- 290
Query: 377 EAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSIS 436
+YF + A ++EE L QG + M +S S
Sbjct: 291 -SYF------------------KEALFLIEEFLPQG-YGELM--------------KSES 316
Query: 437 HGAQSPK---LSKMLEVLVDHFKT-KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKAT 492
A+ K +S ++ L++ FK+ + +IF V IM A A +
Sbjct: 317 GSAELTKRGYVSSKVQTLINIFKSFGSSEEVLCMIF------VERIMTAKAVERFMRGNV 370
Query: 493 EFIGQSSGKASKGQSQK------VQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
F S + G + K VQ+ L+ FRAG N++ T + EEG+D+ VI
Sbjct: 371 NFSRFSISYLTGGSTSKDSLSPAVQRFTLDLFRAGKVNLLFTTDVTEEGIDVPNCSCVIR 430
Query: 547 FD 548
FD
Sbjct: 431 FD 432
>gi|290988185|ref|XP_002676802.1| predicted protein [Naegleria gruberi]
gi|284090406|gb|EFC44058.1| predicted protein [Naegleria gruberi]
Length = 649
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 103/468 (22%), Positives = 192/468 (41%), Gaps = 63/468 (13%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
RDYQ + +LF+N+L+ LPTGLGKTL++ +++ P+ + F PL QQ
Sbjct: 200 RDYQVEMYFQSLFTNSLICLPTGLGKTLVSVLLMKKMSVLNPEKLVAFVVNKIPLAFQQS 259
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTK--RVFFVTPQVLEKDIQSGTCLMKYLV 228
+ + ++ ++ + Q + + + +V F T +L ++ +
Sbjct: 260 DY---YITETEDKSLVLCSQTRTAESIERLRKREVQVCFFTDGLLLNLFENRMLRPEDFS 316
Query: 229 CLVIDEAHRATG-NYAYCTAIRELMSVPVQLRILALTATPGSKQQT-IQHIIDNLYISTL 286
+V DE H N Y + +++I LTA+P QQ + ID++ L
Sbjct: 317 MVVFDEIHHGISPNSRYNLLGAAFRNSQSRVKITGLTASPLDFQQLEVSFKIDSVSYPFL 376
Query: 287 EYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQ 346
+ + ++ RK M QE +++ ++ E
Sbjct: 377 TREKMREMENTASTKIRK-----TSMKQEQIQLISKFKE--------------------- 410
Query: 347 TLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLE 406
V LLN + L + K + +FG+ I++ RL I P YE +
Sbjct: 411 ---EVCLLNEQ----------LLEYKINNL-WHFGSFISIIGYLRL----HIPPQYESIS 452
Query: 407 EKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF--------KTK 458
+K+ + M+ ++ ++ S K S + + F KTK
Sbjct: 453 QKMLKFIGLMEMTNILGTKEALEYLESSKDLEYSKEKFSNITRSFSERFGVLESILNKTK 512
Query: 459 DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518
D SR+++F + + L +GQ +++ Q+ ++E+F
Sbjct: 513 DD--SRILVFVKTKEMSFRLTRMLERKFKQFYPQRIVGQYGAGGMNYENE--QRVLIEEF 568
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
+ ++V+TS+ EEG+DI + ++V+ FD N+S R+IQ GR +K
Sbjct: 569 KNHECKLLVSTSVLEEGIDISDCNIVVLFDGNLSLRRIIQARGRARQK 616
>gi|395855808|ref|XP_003800341.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 isoform 1
[Otolemur garnettii]
Length = 926
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 110/509 (21%), Positives = 222/509 (43%), Gaps = 74/509 (14%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R+YQ + A NT++ PTG GKT ++ ++ + + F G K+VF A P+
Sbjct: 245 RNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEDHLKKFSQGQRRKVVFFANQIPVY 304
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ + + GI T + +P ++ + + F+TPQ+L +++
Sbjct: 305 EQQKSVFSKYFERLGYKVAGIS-----GATAENAPVEQIV--ENNDIIFLTPQILVNNLK 357
Query: 219 SGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATPG-- 268
+GT + ++ DE H + + Y + + S P+ +++ +TA+ G
Sbjct: 358 NGTIPSLSVFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSDPLP-QVIGMTASVGVG 416
Query: 269 ------SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHN-----RKIELIEVEMGQEAV 317
I + +L +S + ++ +++ V+ RK+E + + +
Sbjct: 417 DAKNTDEAMDYICRLCASLDVSEIVTVKDNLEELEQIVYKPQKYFRKVESRTTDPFKCII 476
Query: 318 -EINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDK----FRQAPPPNLPQIK 372
E+ + + L + +QNR++ T +++ K FR LP
Sbjct: 477 SELMRETESLAKSICGELETLSPIQNREFGTQKYEQWISTVQKACTVFR------LPD-- 528
Query: 373 FGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLEEKLKQGSFARFMSKNEDI 424
+ E+ + LY H+R+ +++ H ++ A + L++ A F +D+
Sbjct: 529 -RDEESRICKALFLYTSHLRKYNDALIINEHARMKDALDYLKDFFSNVRAAGFDETEQDL 587
Query: 425 -----RKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM 479
K++ L S+ ++PKL + +L + + +P+ +R I+F R V +
Sbjct: 588 TRRFEEKLQELETISVDPNNENPKLEDLCFILQEEYHL-NPE-TRTILFVKTRALVDALK 645
Query: 480 NALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRA-GGYNVIVATSIGEEGL 536
+ L +K G+ + G + Q+ VL F G N+++ATS+ +EG+
Sbjct: 646 KWIEGNSRLNFLKPDILTGRCKTNQNIGMTLPAQKCVLNTFGTNGANNILIATSVADEGI 705
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGR 565
DI++ +LVI ++ + ++MIQ GR GR
Sbjct: 706 DIVQCNLVILYEYVGNVIKMIQTRGR-GR 733
>gi|351713047|gb|EHB15966.1| Putative ATP-dependent RNA helicase DDX58 [Heterocephalus glaber]
Length = 925
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 118/523 (22%), Positives = 224/523 (42%), Gaps = 74/523 (14%)
Query: 96 AEAAKTWIYPVNVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
+E + T +Y P R YQ + A NT++ PTG GKT ++ ++ + + F G
Sbjct: 231 SEVSHTNLYSPLKP-RSYQLELALPAKEGKNTIIYAPTGCGKTFVSLLICEHHLQKFSQG 289
Query: 155 ---KIVFAAPSRPLVMQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTK 203
K+VF A P+ QQ + + GI T + P A ++
Sbjct: 290 RKGKVVFFANQVPVYEQQKTVFSRYFERLGYRVTGIS-----GATAENVPV--AQTIESN 342
Query: 204 RVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVP 255
+ +TPQ+L ++++GT + ++ DE H + ++ Y + + S P
Sbjct: 343 DIIILTPQILLNNLKNGTVPSLSIFTLMIFDECHNTSKHHPYNMIMFNYLEQKLGGSSDP 402
Query: 256 VQLRILALTATPG-----SKQQTIQHI------IDNLYIST-------LEYRNESDQDVS 297
+ +++ LTA+ G + ++ I +I +D I+T LE Q +S
Sbjct: 403 LP-QVIGLTASVGVGDAKNTEEAIAYICKLCASLDASVIATVKENLEELEQVVYKPQKIS 461
Query: 298 SYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSR 357
V R ++ + Q E + + + + L + +Q+R + T +
Sbjct: 462 RKVKPRTTNRFKLIISQLMKETEH----MAKIISEELGYLFEIQDRVFGTQKYEQWIVEV 517
Query: 358 DKFRQAPPPNLPQIKFGEVEAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLEEKL 409
K + Q+ E E+ + LY H+R+ ++S ++ + L++
Sbjct: 518 HK-----ACRVFQLPDKEEESRICKAMYLYTSHLRKYNDTLIISEDAQMKAGLDYLKDFF 572
Query: 410 KQGSFARFMSKNEDI-----RKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSR 464
A F +D+ K+ L S+ ++PKL + +L + + +PK +R
Sbjct: 573 NNVRAAAFDEIEQDLTRRFEEKLPELENVSMDPSNENPKLKDLHLILQEEYHV-NPK-TR 630
Query: 465 VIIFSNFRGSVRDIMNALA--TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG 522
I+F R V + + + + +K G+ G + Q+ VL+ FRA G
Sbjct: 631 TILFVKTRALVDALKKWIEENSALNFLKPGILTGRGRTSNKTGMTLPAQKCVLDSFRANG 690
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
N+++ATS+ +EG+DI + +LVI ++ + ++MIQ GR GR
Sbjct: 691 DNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQSRGR-GR 732
>gi|340712553|ref|XP_003394821.1| PREDICTED: endoribonuclease Dicer-like [Bombus terrestris]
Length = 1488
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 118/523 (22%), Positives = 214/523 (40%), Gaps = 59/523 (11%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI----YNFFRWFPDG--KIVFAAPSRP 164
R YQ + + A N ++ LPTG GKT IA ++I + R + +G +F + P
Sbjct: 11 RPYQIDLFEIACKENVIIYLPTGAGKTFIAVMLIKELSADIRRPYAEGGKHTIFIVNTVP 70
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW---------KTKRVFFVTPQVLEK 215
LV+QQ + + G+ G +S + FW V +T Q+L
Sbjct: 71 LVIQQSDYIKRLTGLS-------CGTLSSEEGVDFWHDEEWNEHLNNHEVLVMTSQILVN 123
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV--QLRILALTAT---PGSK 270
+ G + + ++ DE HRA ++ ++ + P Q R+L L+A+ +
Sbjct: 124 ALCHGYMFLNRINLIIFDECHRAVNDHPMRQIMQLFENCPKEEQPRVLGLSASLLNANVR 183
Query: 271 QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVE-INNRIWEVIRP 329
+ +Q ++ +L + T R + + IE I ++ Q ++ + I +I+
Sbjct: 184 LEKVQSVMQSLEV-TFNARIATATVADKSYYASPIEEI-IQFDQHVIDNVGECINNIIKE 241
Query: 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHI 389
S L+ L N Y S + K N+ Q F Y + L H+
Sbjct: 242 VESILNCAVLKDNLKYNESSAEFRPKTISKKLSCILRNI-QYHFLRTGIYGASKCVLLHL 300
Query: 390 RRL----LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLS 445
+L S + Y +LE + + R + ++ K+K ++ + S ++
Sbjct: 301 IQLEYLKKSIDDVETLY-ILEYLITKVINCRKLLED----KMKGSPEKERIYNYSSDQIQ 355
Query: 446 KMLEVLVDHFKTKDPKHSRV-IIFSNFRGSVRDIMNALATIGDLVKATEF------IGQS 498
K+ +VL D + K IIF R + + + L ++ + +F IG S
Sbjct: 356 KLFKVLKDFYNNKHSDQVFCCIIFVQRRFTAKILYQILKSVSIYDEECKFLHPEFVIGVS 415
Query: 499 SGKASKGQS----QKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
S + + + VL +FR G N IVAT + +EG+D+ + L+I +D P+
Sbjct: 416 SNPFRNSKELLCVSERNKEVLLRFRNGSLNCIVATDVIDEGIDVPKCSLIIRYDL---PM 472
Query: 555 RMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVK 597
+ RT + GR H + V ++ QY+ R + K
Sbjct: 473 DV-----RTYIQSKGRARHAYSRYVVLLQSDDSQYLRRHNEYK 510
>gi|405973602|gb|EKC38304.1| Interferon-induced helicase C domain-containing protein 1
[Crassostrea gigas]
Length = 1260
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 77/133 (57%), Gaps = 5/133 (3%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQ 497
++PKL + ++ D+FK ++P +RVI+F R V+ I + +L + +F+G
Sbjct: 929 RNPKLMALRHMIGDYFK-ENP-DARVIVFVKTRELVKAIETYMKETEELRILNPIQFVGV 986
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
+ K S G ++ Q +LE F+ G + VI+ATS+ EEGLDI + LV+ +D + + M+
Sbjct: 987 QANKESGGMTKVEQDEILELFKEGNHKVIIATSVAEEGLDIQKCSLVVRYDHVTNEIAMV 1046
Query: 558 QRMGRTGRKHDGR 570
Q GR GR D +
Sbjct: 1047 QSRGR-GRAEDSK 1058
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 105/237 (44%), Gaps = 28/237 (11%)
Query: 95 DAEAAKTWIYPVN-VPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFF---R 149
D++ + I PV + +R YQ + + +L N+++ PTG GKT +A +I + +
Sbjct: 477 DSDDEEESIGPVKELELRSYQMELARPSLEGKNSVIVAPTGSGKTHVALYIIKHHMESIK 536
Query: 150 WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
K++F L QQ + C +P + + +TG+ +R + + VT
Sbjct: 537 SIRHPKVIFLVEQSALAEQQGKQC--TTYLPCKVKV-ITGESQRNERMK----RDLLVVT 589
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR--------IL 261
Q+L ++ G + +V DE H N++Y + + + +Q R I+
Sbjct: 590 AQILLNALRDGIVSVTDFSLMVFDECHHTNDNHSYNMIMNRYLDIKLQDRERAKTLPMIV 649
Query: 262 ALTATPGSKQQT--------IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEV 310
+TA+ G + T I+ ++ N+ + E+ ++ YV+ K +L +V
Sbjct: 650 GMTASVGVGKATEDTKAKKHIEKVLANMDAEMIVTVTENIMELKKYVNIPKQKLYKV 706
>gi|409046535|gb|EKM56015.1| hypothetical protein PHACADRAFT_122116 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1496
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 124/515 (24%), Positives = 198/515 (38%), Gaps = 108/515 (20%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD-----GKI-VFAAPSRP 164
R YQ I A N + AL TG GKT I+ ++I +W GKI VF P
Sbjct: 14 RRYQEEIFSRAQERNVIAALDTGSGKTYISTLLI----KWIAARDAGLGKIIVFLVPKVA 69
Query: 165 LVMQQ-----------IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL 213
LV QQ + C+ I DMT + K V +T Q+
Sbjct: 70 LVEQQGDFIARETPLRVSKCYGATAI------DMTDRRGWRKEIEL---HDVLVMTAQIF 120
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR--ILALTATPGSKQ 271
+ M + +V DE H N+AY +RE + R + +TA+P
Sbjct: 121 LNILTHSHWTMDKVSLMVFDECHHTRKNHAYNGIMREYFQWTSEKRPKVFGMTASP---- 176
Query: 272 QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEV-EMGQEAVEINNRIWEVIRPY 330
+ ++ + +++ N ++I V E +E + + R EV+R Y
Sbjct: 177 --------------IWNPRDAVESLATLERNLDAKVIAVREHVEELADHSPRPQEVLREY 222
Query: 331 TS------RLSAIGLLQNRDYQTLSP---VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFG 381
+ A L +L P + + R +F ++ + + Y G
Sbjct: 223 QASPITYPHYPATNLWARLALDSLPPSFDIPVEKVRTRF---------EVTYHSLGPY-G 272
Query: 382 ALITLYH-----IRRLLSS------------------HGIRPAYEMLEEKLKQGSFARFM 418
A + LYH I + +S GI+ E+ +L F+ F
Sbjct: 273 AELFLYHDIKHRIAQFISQAEDHMEYMNTTHLDGVQPEGIQLPPELAHMELVLQQFSDFF 332
Query: 419 SKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDI 478
+D V + I SPK+ + ++L +++K ++ + IIF R +
Sbjct: 333 DNEDDPDTVPI----RIDLKWCSPKVVLLSQLLFEYYK----QNFQGIIFVEQRHVAACL 384
Query: 479 MNALATIGDL---VKATEFIGQSSGKASK----GQSQKVQQAVLEKFRAGGYNVIVATSI 531
L I L K+ + IG + K G + K QQ ++ FR G N++VATS+
Sbjct: 385 SKMLPRIPPLELYFKSAQLIGHGASSVQKSQVRGMALKSQQEAVKMFRDGECNLLVATSV 444
Query: 532 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
EEGLD +LV+ FD + IQ GR +K
Sbjct: 445 AEEGLDFPACELVVRFDPIQHMVGYIQSRGRARQK 479
>gi|260809268|ref|XP_002599428.1| hypothetical protein BRAFLDRAFT_249510 [Branchiostoma floridae]
gi|229284706|gb|EEN55440.1| hypothetical protein BRAFLDRAFT_249510 [Branchiostoma floridae]
Length = 613
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 112/506 (22%), Positives = 206/506 (40%), Gaps = 73/506 (14%)
Query: 107 NVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPD----GKIVFAAP 161
++P+R YQ + + AL NT++ PTG GKT +A + + ++VF
Sbjct: 18 DIPMRGYQMELAEPALEGRNTIICAPTGSGKTRVAIKITRDHLEVGAGVEARRRVVFLVN 77
Query: 162 SRPLVMQQIEAC-------HNIVGIPQEWTIDM-TGQISPTKRASFWKTKRVFFVTPQVL 213
PLV QQ A ++I+ + E T D+ G+ P V +T QVL
Sbjct: 78 KMPLVEQQCNAFREYLSPKYDILPLSGETTADIPVGETLPDYD--------VIILTAQVL 129
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR-------ILALTAT 266
E ++ + L+ DE H N Y + + V+ + I+ LTA+
Sbjct: 130 ENALRDELITLDTFSMLIFDECHHCQKNDPYNAIMTRYIKQKVERKSSISLPQIIGLTAS 189
Query: 267 PG-----SKQQTIQHII------DNLYISTL--------EYRNESDQDVSSYVHNRKIEL 307
G +++ ++HI+ D +IS + +Y + D++V +
Sbjct: 190 LGVGKAKGQKEAVEHILRACANLDAEWISQVVEHKEELQKYNQKPDEEVKPVSGRSEDPF 249
Query: 308 IE-VEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP 366
+ + M E +E I ++P + R + + Y+ V+L R
Sbjct: 250 ADMINMIMEDIEKTLAIEADLKPPSQR-------EKQAYEQWV-VNLARKGATLRDKKVS 301
Query: 367 NLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRK 426
+ YF AL R + A + LE+ + F + D+ K
Sbjct: 302 RAIHAATTHLRKYFDALAINADAR-------TKDALQYLEKFVTGLQKEGFDGTDVDLVK 354
Query: 427 ----VKLLMQQSISHGAQS-PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNA 481
K +Q+ + S PKL ++ +++ ++ K SR ++F R ++
Sbjct: 355 HFTEAKERLQECAADPKYSNPKLDQLKYMILQAYEEK--PDSRCLLFCKTRALTIALLTW 412
Query: 482 LATIGDLVKAT--EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIM 539
+ L K +G + +++ G +Q Q +LE F GG+ ++++TS+ EEG+DI
Sbjct: 413 MQEDQALRKLNPGRLVGAGASESTGGMTQNQQVELLELFTTGGHKIVISTSVAEEGIDIA 472
Query: 540 EVDLVICFDANVSPLRMIQRMGRTGR 565
+ + V +D + + +Q GR GR
Sbjct: 473 KCNFVFRYDYVGNEIGKVQTRGR-GR 497
>gi|449543396|gb|EMD34372.1| hypothetical protein CERSUDRAFT_55073 [Ceriporiopsis subvermispora
B]
Length = 1702
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 129/520 (24%), Positives = 205/520 (39%), Gaps = 115/520 (22%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP-----DGKI-VFAAPSRP 164
R YQ I A N + AL TG GKT I+ ++I RW GKI VF P
Sbjct: 16 RRYQEEIFSRAQEGNVIAALDTGSGKTYISTLLI----RWISVRDAGQGKIIVFLVPKVA 71
Query: 165 LVMQQIE--ACHNIVGIPQ---EWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS 219
LV QQ + A H + + + IDM + K + V +T Q+ +
Sbjct: 72 LVDQQGDFIAKHTPLRVSKFCGATAIDMADRPGWLKEL---ENVDVLVMTAQLFLNILTH 128
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR--ILALTAT----PGSKQQT 273
G + + +VIDE H N+AY +RE +P + R I +TA+ P Q++
Sbjct: 129 GHWGLDKVSLMVIDECHHTRKNHAYNGIMREYFQLPTRKRPKIFGMTASPVWNPRDAQES 188
Query: 274 IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAV--EINNRIWEVIRPYT 331
+ + NL + R D+ + ++ K + E E +WE
Sbjct: 189 LLTLERNLDAKVMAVRQHVDE-LKAHAPKPKEWVHEYPPSPEVYLEYPTCTLWE------ 241
Query: 332 SRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRR 391
RLSAI + + D PV+ + +R ++ + Y L +R+
Sbjct: 242 -RLSAITIPPDVDI----PVEKIRARY-----------EVTLQSLGPYGADLFLYTDLRQ 285
Query: 392 LLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQS------PKLS 445
++ +++E+ M N D +K Q + A + P
Sbjct: 286 RIA--------QLIEQT---------MEGNLDTLAIKQYYQDGDVYMAPAFADVLLPPQV 328
Query: 446 KMLEVLVD-------------------HFKTKDPKHSRVII-------FSNFRGSV---- 475
+ LEV++D H K PK R++I S F+G +
Sbjct: 329 QELEVILDDFRELFEDSANPDVVPVTVHLKWCSPK-VRILIDILFDQYTSTFQGIIFVEQ 387
Query: 476 RDIMNALA-------TIGDLVKATEFIGQSSGKA-----SKGQSQKVQQAVLEKFRAGGY 523
R + LA + L+++ + IG +G + KG + + QQ V++ FR
Sbjct: 388 RHVAACLAKMLPRVPQLSHLIRSAQLIGHGTGNSMYKIRGKGMAVRNQQDVVKLFREKQI 447
Query: 524 NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
N++VATS+ EEGLD DLVI FD + +Q GR
Sbjct: 448 NLLVATSVAEEGLDFPACDLVIRFDPLQHMVGYLQSRGRA 487
>gi|255933596|ref|XP_002558177.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582796|emb|CAP80997.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1393
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 119/515 (23%), Positives = 200/515 (38%), Gaps = 90/515 (17%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAA--------VVIYNFFRWF----------- 151
R YQ + + + N +VA+ TG GKT + V + FF
Sbjct: 16 RGYQLEMLEASRKENIIVAMDTGSGKTHMHVSSFTFCRHVFLTVFFSAILRIIDELENSD 75
Query: 152 -PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW----KTKRVF 206
PD I F AP+ L +QQ E + + + + + W K RV
Sbjct: 76 SPDKLIWFLAPTVALSLQQHEVITSQILSVKTKILTGLDNVDRWTDQGIWDKVLKDIRVV 135
Query: 207 FVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG---------NYAYCTAIREL-MSVPV 256
T VL + G M L LV DEAH T N+ + T +R +VP
Sbjct: 136 VSTYAVLADALGHGFVRMSRLALLVFDEAHHCTKRHPANKIMQNHYHPTLLRSGPNAVP- 194
Query: 257 QLRILALTATPGSKQ-----QTIQ---------------HIIDNLYISTLEYRNESDQDV 296
RIL LTA+P + +TI+ +++N + LE N D
Sbjct: 195 --RILGLTASPVVRSSQNELETIESNLNAICKTPRVHRTELLENTHRPHLERVNYISFDE 252
Query: 297 SSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNS 356
+ Y ++ L +E + A I + W + L+++D+ T+ L +
Sbjct: 253 AHYGSGSRLLLPLIECCR-AYNIEDDPW------------VESLRSKDH-TVELTKALTT 298
Query: 357 RDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFAR 416
F N E G + + I + + L+ ++ S
Sbjct: 299 GKTFCSEQLRNFQARSCHIYEELGGWAVDFF----------ISASIDQLQRSMQDASEMS 348
Query: 417 FMSKNEDIRKVKLLMQQSISHGAQ-SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
+ + E I ++LL+ A+ S +S LE+L++ + D ++F+ R +V
Sbjct: 349 HLDQMERIYLLELLLAMPAPVSAEESNHVSVKLEMLLNFLEKMDRPGFSGLLFAKQRATV 408
Query: 476 RDIMNALAT---IGDLVKATEFIGQSSGKASKG-----QSQKVQQAVLEKFRAGGYNVIV 527
+ L+ D + ++G SS + KG + +Q+ L++F+ G N+IV
Sbjct: 409 SVLARILSIHPKTRDRFQCAAYVGWSSDRNRKGCLGDLLHRDMQRDTLDEFKVGRKNLIV 468
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
T + EEG+D+ LVIC+D + +QR GR
Sbjct: 469 TTDVLEEGIDVSACSLVICYDKPANLKSFVQRRGR 503
>gi|154282055|ref|XP_001541840.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150412019|gb|EDN07407.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1437
Score = 77.8 bits (190), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 116/489 (23%), Positives = 208/489 (42%), Gaps = 75/489 (15%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV-FAAPSRPLVMQQ 169
R YQ + + +L N ++A+ TG GKT +A + I + K V F P+ L QQ
Sbjct: 48 RAYQLEMLEASLRENIIIAMDTGSGKTQVAILRIRHELETCAAHKFVWFLTPTVALAEQQ 107
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK----------RVFFVTPQVLEKDIQS 219
+ I Q+ + T + + ++W TK R+ TPQVL +
Sbjct: 108 HK------NISQQLSAYETRLLLGSDNVNYWSTKKIWDDILLNIRIVVSTPQVLLDAMTH 161
Query: 220 GTCLMKYLVCLVIDEAHRAT-GNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHII 278
G M + LV DE + G Y YCT+ + ++ L A TP ++ + +
Sbjct: 162 GFVTMPQIALLVFDEGMFPSHGCYMYCTSANWISAIEDNLN--ARCETPRIHREELMRYV 219
Query: 279 DNLYISTLEYRNESDQDVSSYVHNRKIELIE-VEMGQEAVEINNRIWEVIRPYTSRLSAI 337
+ T+ + + D + S + E+++ V+M Q+ P+ L
Sbjct: 220 HRPELCTVNF--QEDYSLGSDILRSLYEILQAVDMEQD-------------PWIKNLR-- 262
Query: 338 GLLQNRDYQTLSPVDLLNSRDK---FRQAPPPNLPQ--IKFGEVEAYFGALITLYHIRRL 392
Q +D + S +LLN+ +K F A L + + E + A + + +
Sbjct: 263 ---QQKDQR--SQKNLLNALEKRKTFCMAQMSKLLRQAVSIHEDLGQWAADAFISEVLKR 317
Query: 393 LSSHGIRPAYEMLEE-KLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQS-----PKLSK 446
L + R ++L+ + K+ +F + L Q I G Q ++S
Sbjct: 318 LETKRARQPTDILDTLERKEANFV-----------FETLSQLPIQPGKQYWDSEPDRVSG 366
Query: 447 MLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL---VKATEFIGQS--SGK 501
+L+D + + I+F+ R +V + + ++ L + F+G S +G+
Sbjct: 367 KANLLIDLLEREYTSDFTGIVFAQQRSTVTMLAHLISRHPRLKHKFVSGAFLGDSGYAGR 426
Query: 502 AS---KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR-MI 557
S + K Q+ ++ R+G N+++ATS+ EEG+D+ LV+CFD +S LR I
Sbjct: 427 TSTIIELHDLKTQKGSIDDLRSGKKNLLIATSVLEEGIDVSACHLVVCFD-TISNLRSFI 485
Query: 558 QRMGRTGRK 566
QR GR ++
Sbjct: 486 QRRGRARKE 494
>gi|296417821|ref|XP_002838549.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634492|emb|CAZ82740.1| unnamed protein product [Tuber melanosporum]
Length = 1490
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 104/414 (25%), Positives = 175/414 (42%), Gaps = 77/414 (18%)
Query: 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYA--------YCTAIRELMSVPV 256
V T QVL + G M+ + +V DEAH G + Y +R+ + VP
Sbjct: 71 VVVSTHQVLLDALTHGFVRMEGIGLIVFDEAHHCVGQHPANRIMQEFYHPRVRKGLEVPA 130
Query: 257 QLRILALTATPGSKQ--QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQ 314
+L LTA+P K ++H+ +I L +++V+ R IE + +
Sbjct: 131 ---VLGLTASPVVKSTPDQLRHVSPKFWIGVL----------ANWVYVRVIETNLNAISR 177
Query: 315 EAVEINNRIWEVIR----PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAP------ 364
V NR E++R P R+ G+ + L + L + RQ P
Sbjct: 178 TPV--RNRE-ELLRHVHPPVLKRIQ--GVATDNVPSALDSLQLAWATMDIRQDPYIKALQ 232
Query: 365 ---PPNLPQIK--------FGEVEAYFGALITLYHIRRLLSS--------HGIRPAYEML 405
PP+L +I+ + +V+ G L +H+R+ + H I+ A +
Sbjct: 233 SANPPDLGRIETTISKRNTYCQVQMR-GLLNKAFHLRKEFGAWSVDCYLKHAIQKAIKFA 291
Query: 406 EEKLKQGSFARFMSKNEDIRKVKLLMQQSIS-------HGAQSPKLSKMLEVLVDHFKTK 458
+E+ + + + NE+ R +K ++ + G S K+ K++EVL+ K
Sbjct: 292 DEEDPESMWMEW--NNEEKRYLKSILSKIAVPRDIGPIEGRLSDKVEKLIEVLLGEHKDD 349
Query: 459 DPKHSRVIIFSNFRGSVRDIMNALAT---------IGDLVKATEFIGQSSGKASKGQSQK 509
K + +IF R V + L T +G +V +E G++ + + K
Sbjct: 350 GGKFAG-LIFVEQRVGVSILAEILKTDSRTKDIFRVGTVVGVSEGNGRTRKAIYELVNLK 408
Query: 510 VQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
Q +E FRAG N++V+TS+ EEG+DI LV+CF + IQR GR
Sbjct: 409 GQYETIEDFRAGKKNLVVSTSVVEEGMDIPACRLVVCFSLPPNLKSFIQRRGRA 462
>gi|356509849|ref|XP_003523657.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Glycine max]
Length = 1671
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 122/498 (24%), Positives = 201/498 (40%), Gaps = 70/498 (14%)
Query: 107 NVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK----IVFAAPS 162
N+ R YQ + + A NT+ L TG GKTLIA +++ + I+F AP+
Sbjct: 63 NMNPRRYQIEVYEVARRRNTIAVLDTGSGKTLIAVMLMKEVGQAIKTSGVKKLIIFLAPT 122
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQ 218
LV QQ + + E G + T + W+ + V +TPQ+L ++
Sbjct: 123 VHLVNQQFKNIKFLTDFQVEEYYGAKGVDTWTLKT--WEKEISNNDVLVMTPQILLDALR 180
Query: 219 SGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLRILALTATPGSKQQTIQHI 277
M+ + +VIDE HR GN+ Y ++E + +I +TA+P K+ +
Sbjct: 181 KAFLRMEMICLIVIDECHRTIGNHPYTKIMKEFYHQANEKPKIFGMTASPVGKKGVSSTM 240
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIE-VEMGQEAVEINNRIWEVIRPYTSRLSA 336
IS L ES D Y + E+ V +E+ ++ +R SA
Sbjct: 241 DCEDQISEL----ESILDSQRYTVEDRTEMDRCVPSAKESCRYYDQ---------ARFSA 287
Query: 337 IGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALIT-----LYHIRR 391
+ L + + KF N Q + +VE F L L I
Sbjct: 288 LSLKPKIEALSF----------KFDALLSEN--QSNYKDVENKFKTLSQRMSNELAKILH 335
Query: 392 LLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKL----LMQQSISHGAQSPKLS-- 445
L GI AYE + K+ +F++ + E RK L +++ I +S L+
Sbjct: 336 CLEDLGILCAYEAV--KICHENFSKSEGECEIYRKGYLQCITFLEEVIKLIEESLHLADK 393
Query: 446 KMLEVLVDHFKTKD-----PKHSRVI-IFSNFRGSVR-------DIMNALATIGDLVKAT 492
K+LEV ++ + +D PK +I +F +F S + D + I K
Sbjct: 394 KILEVDFNYSQAEDLGYISPKLIELIKLFQSFGESSQVLCLIFVDRIITAKVIQRFAKTV 453
Query: 493 EFIGQSSGKASKGQSQKV-------QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
I + G + V Q+ +L+ FR+G N++ T + EEG+ + VI
Sbjct: 454 PNISHFTVSYLTGNNTSVDALAPKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVI 513
Query: 546 CFDANVSPLRMIQRMGRT 563
FD + +Q GR+
Sbjct: 514 RFDLPKTVRSYVQSRGRS 531
>gi|291333650|gb|ADD93341.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S11-C441]
Length = 270
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
Query: 456 KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVL 515
+ K SR+I+F+N+R +V + AL + + +KA +FIGQSS S G + K Q + L
Sbjct: 47 RVKRDAESRIIVFANYRDTVEALEKALDGL-EGIKAIQFIGQSSRSGSGGLTPKQQISRL 105
Query: 516 EKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558
E+FR+GG NV+VATS+GEEGLDI DLV+ ++ S +R IQ
Sbjct: 106 EEFRSGGANVLVATSVGEEGLDIPSADLVVFYEPVSSEIRTIQ 148
>gi|255550219|ref|XP_002516160.1| Ribonuclease III, putative [Ricinus communis]
gi|223544646|gb|EEF46162.1| Ribonuclease III, putative [Ricinus communis]
Length = 1660
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 119/513 (23%), Positives = 207/513 (40%), Gaps = 92/513 (17%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK----IVFAAPSRPLV 166
R YQ + + A+ NT+ L TG GKT+IA ++I + I+F AP+ LV
Sbjct: 63 RSYQVKVFEVAMKRNTIAVLETGAGKTMIAVMLIREIGQAIKSNDFKKLIIFLAPTVHLV 122
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK---------RVFFVTPQVLEKDI 217
QQ E + ++ T G+ K W K V +TPQ+L +
Sbjct: 123 NQQYE-------VIKDNTNFKVGEYYGAKGIDGWSMKVWEKEINEHDVLVMTPQILLDAL 175
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLRILALTATPGSKQQT--- 273
+ ++ + ++IDE HR TGN+ ++E + + +I +TA+P ++
Sbjct: 176 RKAFLNLEMVSLMIIDECHRTTGNHPCTKIMKEFYHKLSNKPKIFGMTASPVVQKGVSSA 235
Query: 274 ---------IQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
++ I+D+ I T+E R E D V S R+I + +I ++I
Sbjct: 236 VDCEDQISELETILDS-QIYTIEDRTEMDVHVPS---AREICKFYDIAQLYSSDIKSKIE 291
Query: 325 EVIRPY-TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGAL 383
+ S LS G +Q+ Y+ ++ D+++ L Q + + L
Sbjct: 292 ASWSKFDASLLSLQGSIQS-SYK--------DADDRYK-----TLQQRLYNDYSKILNCL 337
Query: 384 ITLYHIRRLLSSHGIRPAYEMLEEKLKQG-SFARFMSKNEDIRKVKLLMQQSIS------ 436
L G+ AYE ++ L+ S A F E K K +++ +S
Sbjct: 338 EEL----------GLICAYEAVKICLENSPSTAAFDIYREISLKCKYFLEEVLSIIGTYL 387
Query: 437 -HGAQ------------------SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRD 477
HG SPKL ++L+V + K+ +IF + + +
Sbjct: 388 PHGDSYLLDLGFDYLKAVRLSYISPKLYELLQVFLSFGVDKE---VLCLIFVDRIITAKV 444
Query: 478 IMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLD 537
I + + LV T S + + K Q+ + FR+G N++ +T + EG+
Sbjct: 445 IERFVKKVAALVHFTVSYVTGSNTSVDALTPKTQRETMYAFRSGKVNLLFSTDVLREGIH 504
Query: 538 IMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
+ VICFD + Q GR R++D +
Sbjct: 505 VPNCSCVICFDLPKTVCCYAQSRGR-ARQNDSQ 536
>gi|449453061|ref|XP_004144277.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Cucumis sativus]
Length = 1359
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 114/512 (22%), Positives = 203/512 (39%), Gaps = 102/512 (19%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK----IVFAAPSRPLV 166
R YQ + + + NT+ L TG GKT+IA ++I + I+F AP+ LV
Sbjct: 40 RRYQMEVFEVGMRRNTIAVLGTGSGKTMIAVMLIKEIGKAMKSSSDKKLIIFLAPTVHLV 99
Query: 167 MQQIEACHNIVGIPQEWTI-DMTGQISPTK-RASFWKT----KRVFFVTPQVLEKDIQSG 220
QQ N++ ++ + + G + + W+ + V +TPQ+L ++
Sbjct: 100 HQQF----NVIKDHTDFEVAEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKA 155
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELM----SVPVQLRILALTATPGSKQQTIQH 276
+ + ++IDE HRATGN+ Y ++E S P +I +TA+P ++
Sbjct: 156 YFRLGTICLMIIDECHRATGNHPYTKIMKEFYHKSDSKP---KIFGMTASPVIRKGVSSS 212
Query: 277 IIDNLYISTLE-------YRNESDQDVSSYVHNRKIELIEVEMGQ-EAVEINNRIWEVIR 328
+ I+ LE Y E ++V YV + K I E + +E+ +I +
Sbjct: 213 VDCECQIADLESILDAQVYAIEDKKEVEIYVPSAKEICIFYEPAMPQTMELKAKIEALWF 272
Query: 329 PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYH 388
+ + LS NS++ Q + +V++ AL
Sbjct: 273 KFDASLS-------------------NSQEAM---------QGHYKDVDSKLKAL----- 299
Query: 389 IRRLLSSH----------GIRPAYEML------------EEKLKQGSFARFMS------- 419
+RL S H GI AYE + E + + SF ++
Sbjct: 300 KKRLSSDHLKITYCLDELGIMCAYEAIKVLFENVSVPNEESDVYRESFLQYKHFLEEALL 359
Query: 420 --------KNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNF 471
+NE++ + + +++ G SPKL ++L+ L + F + +IF
Sbjct: 360 VIGESLSLENENVPTLGFDLWKAVELGYISPKLFELLQ-LFESFGVS--RQVLCLIFVER 416
Query: 472 RGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSI 531
+ I + + +L T + + KVQ+ LE F G N++ +T +
Sbjct: 417 IIAANVIERIVKKVENLSHFTVSYVTGCNASVGALAPKVQKETLELFCHGKLNLLFSTDV 476
Query: 532 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
EEGL + V+ FD + +Q GR
Sbjct: 477 VEEGLHVPNCSFVVRFDLPKTVRSYVQSRGRA 508
>gi|15220291|ref|NP_174833.1| uncharacterized protein [Arabidopsis thaliana]
gi|12324717|gb|AAG52320.1|AC021666_9 hypothetical protein; 40626-41047 [Arabidopsis thaliana]
gi|332193717|gb|AEE31838.1| uncharacterized protein [Arabidopsis thaliana]
Length = 116
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 63/108 (58%), Gaps = 18/108 (16%)
Query: 3 ANKIPIEINGDDDDEFDWEAAVREIDTAC----QSSKPSTSNSTNFNLCSKANKKPSTCK 58
+++PIE ++D EFDWEAAV+EID AC + P T N T KP +
Sbjct: 12 GSRVPIE-TIEEDGEFDWEAAVKEIDLACLKTTNAHPPITENLT----------KPPAKR 60
Query: 59 QSTLDKFFGNLGPKPQGTEEFNE--GSSFDESLCHVQIDAEAAKTWIY 104
QSTLDKF G PKP+ + +E G+ D SL V+ID EAAKTWIY
Sbjct: 61 QSTLDKFIGRTEPKPENHQVVSECGGNDNDNSLL-VEIDPEAAKTWIY 107
>gi|405958477|gb|EKC24604.1| Interferon-induced helicase C domain-containing protein 1
[Crassostrea gigas]
Length = 676
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 82/146 (56%), Gaps = 7/146 (4%)
Query: 430 LMQQSISHG--AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD 487
L ++ HG +++P L K+ E+++ + ++P + R I+F R ++N + +
Sbjct: 312 LEASALDHGRTSENPLLEKLKEIIISTY-AEEP-NMRAIVFVRTRIMTECLVNWMEDTEE 369
Query: 488 L--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
L +KA ++ G + + G + Q + LE FR G Y VI+AT++ EEGLDI E +LV+
Sbjct: 370 LQHIKAQKYTGAKASISEGGMERHEQVSALELFRDGEYKVIMATTVAEEGLDIKECNLVV 429
Query: 546 CFDANVSPLRMIQRMGRTGRKHDGRI 571
+D SP+ M+Q GR GR + R
Sbjct: 430 RYDYAGSPVAMMQARGR-GRAKNSRF 454
>gi|348562460|ref|XP_003467028.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like [Cavia
porcellus]
Length = 678
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 6/136 (4%)
Query: 431 MQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL-- 488
+ Q +HG ++PKL + ++L K KDP + R IIF+ R S + ++ L L
Sbjct: 338 LTQLATHGPENPKLETLEQIL--RVKFKDPANPRGIIFTRTRQSTQSLLLWLQQQPSLQL 395
Query: 489 --VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
++A IG + S +Q+ QQ V++KFR G N++VATS+ EEGLDI + +V+
Sbjct: 396 VDIRAQMLIGAGNSSQSAHMTQRNQQEVIQKFRMGSLNLLVATSVAEEGLDIAKCSVVVR 455
Query: 547 FDANVSPLRMIQRMGR 562
+ + + M+Q GR
Sbjct: 456 YGLLTNEISMVQARGR 471
Score = 47.0 bits (110), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E ++G W + ++G + RA F T R + T ++L+ + S
Sbjct: 63 HAEEFSLVLG--GRWAMTTLSGDMGA--RAGFGHTARKHDLLICTAELLQMALNSTEEEE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS 269
+ +V+DE H + Y + + + +Q ++L LTA+PG+
Sbjct: 119 HMELTAFSLIVVDECHHTHKDTVYNVILSQYLEHKLQSPRRLPQVLGLTASPGT 172
>gi|341898470|gb|EGT54405.1| hypothetical protein CAEBREN_20187 [Caenorhabditis brenneri]
Length = 1148
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 128/538 (23%), Positives = 221/538 (41%), Gaps = 107/538 (19%)
Query: 107 NVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFR----WFPDGKIVFAAP 161
N+ +R YQ + + AL N ++ PTG GKT +A N R G++ P
Sbjct: 363 NLVLRVYQEELVQPALEGKNCVIVGPTGCGKTEVAIYAALNHLRERQAAGQTGRVAMLVP 422
Query: 162 SRPLVMQQ----IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
PLV QQ ++ C + + + + S R + +TPQ+L +
Sbjct: 423 KIPLVTQQKERFLQYCRGSFTVNGFFGSEKSD--SGEGRKDDVIESHIVVMTPQILINML 480
Query: 218 QSGTCLMKYLVC----LVIDEAHRATGNYAYC---------------------------T 246
QS + V ++ DE H+ATGN+ Y T
Sbjct: 481 QSVRVNERLYVADFSMMIFDEVHKATGNHPYVIINQIVQEWEHDKPQIIGLTASLNVSST 540
Query: 247 AIRELMSVPVQLR-ILALTATPGSKQQTIQHIIDNL--YISTLEYRNESDQDVSSYVHNR 303
A ++L + + +LAL P +Q ID L ++S + E Q ++ + N
Sbjct: 541 AQKDLSQMLFSIHTMLALLNAPYLSTIKLQASIDELNKHVSKPDDSVEVCQPTATALRN- 599
Query: 304 KIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN--RDYQTLSPVDLLNSRDKFR 361
IE +G +++ + + + S+L N R ++ LSP KF
Sbjct: 600 ---YIETYLGTAHIKLCHELESL-----SKLRHNCFPSNSYRRFKKLSP--------KFY 643
Query: 362 QAPPPNLPQI-----KFGEVEAYFGALITLYHIRRLLSSHGI------RPAYEMLEEKLK 410
+ NL I K E A+ + +IR + + G+ R +E +E +++
Sbjct: 644 EIYESNLQNINQDLKKLNTAEKTI-AVTWMKYIRLYVEARGMVDLMPARLVFEFMEARIR 702
Query: 411 Q--------GSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462
+ F+ F K + ++ + + ++K+ + L+ FK
Sbjct: 703 ELDTGHKLGDQFSDFFKKYSGL--------EANAKSDEPMIVTKLKDTLITQFKV--TPD 752
Query: 463 SRVIIFSNFRGSVRDIMNAL--ATIGDLVK------ATEFIGQSSGKASKGQS----QKV 510
SRVIIF R + + I + L + I D + E +G G ++G + Q+
Sbjct: 753 SRVIIFVTQRATAQRISDFLNKSHIMDQFRDPDDDGYDEMVGFVLGTNNQGGAVQQSQQE 812
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV-SPLRMIQRMGRTGRKH 567
QQ VL +F G VIVATS+ EEGLD+ +L+I ++ + S ++++QR GR K+
Sbjct: 813 QQKVLSRFNNGKMKVIVATSVVEEGLDVTSCNLIIKYNCSSGSAIQLVQRRGRARAKN 870
>gi|341890882|gb|EGT46817.1| hypothetical protein CAEBREN_28255 [Caenorhabditis brenneri]
Length = 1015
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 128/538 (23%), Positives = 221/538 (41%), Gaps = 107/538 (19%)
Query: 107 NVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFR----WFPDGKIVFAAP 161
N+ +R YQ + + AL N ++ PTG GKT +A N R G++ P
Sbjct: 230 NLVLRVYQEELVQPALEGKNCVIVGPTGCGKTEVAIYAALNHLRERQAAGQTGRVAMLVP 289
Query: 162 SRPLVMQQ----IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
PLV QQ ++ C + + + + S R + +TPQ+L +
Sbjct: 290 KIPLVTQQKERFLQYCRGSFTVNGFFGSEKSD--SGEGRKDDVIESHIVVMTPQILINML 347
Query: 218 QSGTCLMKYLVC----LVIDEAHRATGNYAYC---------------------------T 246
QS + V ++ DE H+ATGN+ Y T
Sbjct: 348 QSVRANERLYVADFSMMIFDEVHKATGNHPYVIINQIVQEWEYDKPQIIGLTASLNVSST 407
Query: 247 AIRELMSVPVQLR-ILALTATPGSKQQTIQHIIDNL--YISTLEYRNESDQDVSSYVHNR 303
A ++L + + +LAL P +Q ID L ++S + E Q ++ + N
Sbjct: 408 AQKDLSQMLFSIHTMLALLNAPYLSTIKLQASIDELNKHVSKPDDSVEVCQPTATALRN- 466
Query: 304 KIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQN--RDYQTLSPVDLLNSRDKFR 361
IE +G +++ + + + S+L N R ++ LSP KF
Sbjct: 467 ---YIETYLGTAHIKLCHELESL-----SKLRHNCFPSNSYRRFKKLSP--------KFY 510
Query: 362 QAPPPNLPQI-----KFGEVEAYFGALITLYHIRRLLSSHGI------RPAYEMLEEKLK 410
+ NL I K E A+ + +IR + + G+ R +E +E +++
Sbjct: 511 EIYESNLQNINQDLKKLNTAEKTI-AVTWMKYIRLYVEARGMVDLMPARLVFEFMEARIR 569
Query: 411 Q--------GSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462
+ F+ F K + ++ + + ++K+ + L+ FK
Sbjct: 570 ELDKGHKLGDQFSDFFKKYSGL--------EANAKSDEPMIVTKLKDTLITQFKV--TPD 619
Query: 463 SRVIIFSNFRGSVRDIMNAL--ATIGDLVK------ATEFIGQSSGKASKGQS----QKV 510
SRVIIF R + + I + L + I D + E +G G ++G + Q+
Sbjct: 620 SRVIIFVTQRATAQRISDFLNKSHIMDQFRDPDDDGYDEMVGFVLGTNNQGGAVQQSQQE 679
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV-SPLRMIQRMGRTGRKH 567
QQ VL +F G VIVATS+ EEGLD+ +L+I ++ + S ++++QR GR K+
Sbjct: 680 QQKVLSRFNNGKMKVIVATSVVEEGLDVTSCNLIIKYNCSSGSAIQLVQRRGRARAKN 737
>gi|260814153|ref|XP_002601780.1| hypothetical protein BRAFLDRAFT_76000 [Branchiostoma floridae]
gi|229287082|gb|EEN57792.1| hypothetical protein BRAFLDRAFT_76000 [Branchiostoma floridae]
Length = 1211
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 117/513 (22%), Positives = 220/513 (42%), Gaps = 77/513 (15%)
Query: 104 YPVNVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVF 158
Y V +R+YQ + ++AL N ++ TG GKTL++A+V + R K +F
Sbjct: 534 YSGKVALREYQKELARSALLGKNAIITCATGSGKTLVSALVAERAWSEAKRKDLPFKALF 593
Query: 159 AAPSRPLVMQQIEACHNI--VGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKD 216
P R L QQ + + +G+ QE I T ++S T K + + +T Q++
Sbjct: 594 IVPIRNLTKQQKDQFEMLFPLGVVQE--IGDTEELSET-----LKKRDIVMLTAQIVVNS 646
Query: 217 IQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----------RILALTA 265
+++G+ + L L++DE H T ++ Y +R + +L +++ LTA
Sbjct: 647 LKAGSLDLTDLDQLILDECHHTTLDHPYNQIMRYYLLKKAELALANPHQKSLPQVIGLTA 706
Query: 266 T--PGSKQQTIQHIID---NLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEIN 320
+ G +QH+I+ +L S +++ E+ ++ +V + I + GQ +
Sbjct: 707 SLGVGGSGNALQHLIELSASLDASRVDHVKENKDELRRHVFTP--DAIHILSGQPRKPHD 764
Query: 321 NRIWEVIRPYTSRL-SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAY 379
P+++ L S + L+++ + P D +Q + ++K E +
Sbjct: 765 --------PFSTALDSLMQRLESKVFPDTCPYD-----RGTQQCENWIVERVKEAEAKTM 811
Query: 380 FGALITLYHI------RRLLSSHGIRPAYEMLEEKLKQGS----------FARFMSKNED 423
LI ++ RL + A L+EK+ Q +F + D
Sbjct: 812 RNELIVAQYLFDFNRALRLFTKLRAADAIAFLDEKMYQSRAELKGPPKLPIDKFCYQQFD 871
Query: 424 -IRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL 482
IR+ + + +P L ++ +L+ F + S I+ + R I+ +
Sbjct: 872 QIREELCVYAEEEETQFPNPMLQQLRSLLIQKFNEPE---SYGIVLTQQRRETEAIVQYV 928
Query: 483 A---TIGDLVKATEFIGQSSGK-ASKGQSQKVQQAVLEKFRAG-----GYNVIVATSIGE 533
+ ++A +GQ GK K + Q AVL+ FR G G N++VAT + +
Sbjct: 929 EEQDVLQGKMRAKRLVGQ--GKLEDKAITDAQQMAVLKSFRKGLSSEDGCNLLVATDVAQ 986
Query: 534 EGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
EGLD+ + + VI +D + + +Q GR K
Sbjct: 987 EGLDMPKCNFVIRYDFVSNEIGSVQARGRARAK 1019
>gi|224135607|ref|XP_002327260.1| predicted protein [Populus trichocarpa]
gi|222835630|gb|EEE74065.1| predicted protein [Populus trichocarpa]
Length = 116
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 61/112 (54%), Gaps = 27/112 (24%)
Query: 17 EFDWEAAVREIDTACQ-SSKPSTS-----NSTNF--------NLCSKANKKPSTCKQSTL 62
EFDWEAAVREID +C+ ++ PS++ +S+NF N + K TCKQSTL
Sbjct: 1 EFDWEAAVREIDASCERANNPSSTTINQASSSNFTPPVNILNNSSYSSCTKTGTCKQSTL 60
Query: 63 DKFFGNLGP---------KPQGTEEFNEGSSFDESLCHVQIDAEAAKTWIYP 105
DKF G P PQG N D C V+IDAEAAKTWI+P
Sbjct: 61 DKFIGRANPPVKPTVEVRHPQGNGIINS----DGRSCCVEIDAEAAKTWIFP 108
>gi|158706448|sp|Q0UI93.2|DCL1_PHANO RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease DCL1; Includes: RecName:
Full=ATP-dependent helicase DCL1
Length = 1522
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 137/603 (22%), Positives = 231/603 (38%), Gaps = 114/603 (18%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKI--------VFAAPS 162
RDYQ + A NT+ L TG GKT IA +++ + + + F S
Sbjct: 70 RDYQMELFLRAKMQNTIAVLDTGTGKTHIATLLLRHVLEEELENRAKGCAHKMAFFLVDS 129
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRA--SFWKTKRVFFVTPQVLEKDIQSG 220
LV QQ + E GQ K+ + V T QVL +
Sbjct: 130 VNLVFQQANVLRCGLDQGVEGISGAMGQSLFQKQTWDKLFAVNMVIVCTAQVLVDCMMHS 189
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIREL----MSVPVQLRILALTATP-GSKQQTIQ 275
+ + L+ DEAH A N+ Y +++ + + RI A+TA+P K Q+ +
Sbjct: 190 FMSISRMNLLIFDEAHHAKSNHPYARVMKDYYAHELDTSKRPRIFAMTASPVDVKGQSAE 249
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335
H+ E+ +++ + +H+R + + + ++ R E + YT RL
Sbjct: 250 HV------------REAARELETLLHSRIATTSDSALARNSI---TRPEEEVAVYT-RL- 292
Query: 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395
R++F + P + K+G+V + IT +L +S
Sbjct: 293 ---------------------RNEF-ETPLHQKVKAKYGDVAPFRKLFITA----KLHAS 326
Query: 396 HGIRPAYEM---------------LEEKLKQGSFARFMSKNE------DIRKVKLLMQQ- 433
R A +M + E+LK R S E +++ +QQ
Sbjct: 327 ELGRWASDMYWSFAFADEQSRKLQIREELKYNRSKRDWSAAELDAQMARLKEATAFVQQY 386
Query: 434 -----SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL 488
++S S K+ K+ L +++ +R I+F R + + + IG
Sbjct: 387 EIGAPTLSEQDLSSKVMKLQYWLNLYYERTTL--ARCIVFVEKRHTAQLLKLIFDHIGGP 444
Query: 489 -VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
+ +G ++ + S + Q L+KFR G N + ATS+ EEGLDI + +LV+ F
Sbjct: 445 NLHCDVLVGINNRAGEENVSLRSQILTLQKFRRGELNCLFATSVAEEGLDIPQCNLVVRF 504
Query: 548 DANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIF 607
D + + +Q GR R + + H+ + E + ++ R + D I
Sbjct: 505 DLYRTMIGYVQSRGR-ARHRNSKYLHMLEAENK-------EHTERLMNARHDENIMREFC 556
Query: 608 KE---------------KLTAAETDLIAKYFHPTSDS--TWRPSLIAFPHFQA-LPSRVH 649
K+ +L A E L Y S + T+R SL HF A PS H
Sbjct: 557 KDLTHDRQLGDVEQEKAELIALEDKLFPSYTDEKSGAKLTYRSSLSILSHFVATYPSPDH 616
Query: 650 KVM 652
M
Sbjct: 617 NTM 619
>gi|426222380|ref|XP_004005372.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 [Ovis aries]
Length = 943
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 111/499 (22%), Positives = 210/499 (42%), Gaps = 78/499 (15%)
Query: 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPD---GKIVFAAPSRPLVMQQIEACHNIVGIPQ 181
NT++ PTG GKT +A ++ + + FP GK+VF A PL QQ A
Sbjct: 258 NTIICAPTGCGKTFVALLICEHHLKQFPQGRKGKVVFFAVQLPLYEQQKSAFSEYFERLG 317
Query: 182 EWTIDMTGQISPTKRA-SFWKTKRVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRAT 239
++G+I+ + + + +TPQ+L ++ GT + ++ DE H
Sbjct: 318 YKVSGISGEIADSVSVEQIVENNDIIILTPQILVNSLKDGTIPSLSIFTLMIFDECHNTN 377
Query: 240 GNYAYCTAIRELM---------SVPVQLRILALTATPG-----SKQQTIQHI------ID 279
N+ Y + + S+P +++ LTA+ G ++ + ++I +D
Sbjct: 378 KNHPYNMIMFNYLDQKLGGSSDSLP---QVVGLTASVGVGDAKNEAEATEYICRLCASLD 434
Query: 280 NLYIST-------LEYRNESDQDVSSYVHNR---KIELIEVEMGQEAVEINNRIWEVIRP 329
++T LE Q + V +R K + + ++ E + I+E +
Sbjct: 435 TSVLTTVRDNLEELEEVFYKPQKLFRKVESRTTDKFKCVISQLMAETEALAKSIFEELGT 494
Query: 330 YTSRLSAIGLLQNRDYQT----------LSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAY 379
T L + +QNR++ T + DK ++ + + Y
Sbjct: 495 VT--LENLSRIQNRNFGTQKYEQWIIAVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 552
Query: 380 FGALI---------TLYHIRRLLSSHGIRPA-YEMLEEKLKQGSFARFMSKNEDIRKVKL 429
ALI L +++ S+ +R A ++ +E+ L Q F + + EDI
Sbjct: 553 NDALIISEDARMKDALNYLKNFFSN--VRAAGFDAIEQDLTQ-RFEEKLVELEDI----- 604
Query: 430 LMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT--IGD 487
S+ ++PKL + +L + + +P+ +R I+F R V + +
Sbjct: 605 ----SVDPSNENPKLKDLCFILQEEYHL-NPE-TRTILFVKTRALVDALKKWIEENPKLS 658
Query: 488 LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG-GYNVIVATSIGEEGLDIMEVDLVIC 546
L+K G+ + G + Q+ L+ FR +++ATS+ +EG+DI + +LVI
Sbjct: 659 LLKPCILTGRGRTNQTMGMTLPAQKCALDAFRTNRDSKILIATSVADEGIDIAQCNLVIL 718
Query: 547 FDANVSPLRMIQRMGRTGR 565
++ + ++MIQ GR GR
Sbjct: 719 YEYVGNVIKMIQTRGR-GR 736
>gi|158706449|sp|A2R345.2|DCL21_ASPNC RecName: Full=Dicer-like protein 2-1; Includes: RecName:
Full=Endoribonuclease dcl2-1; Includes: RecName:
Full=ATP-dependent helicase dcl2-1
Length = 1387
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 115/498 (23%), Positives = 197/498 (39%), Gaps = 71/498 (14%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + + +L N +V + TG GKT IA + I P I F P+ L +QQ
Sbjct: 20 RSYQVEMFEASLKENIIVTMGTGSGKTHIALLRIIKELESNPHKLIWFLTPTVALCLQQF 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFW----KTKRVFFVTPQVLEKDIQSGTCLMKY 226
+ + + + T+ ++ W K +V T VL + G +
Sbjct: 80 KFLSDNIPAVRARTLTSLDKVELWTEQPVWDAILKEMQVVVSTHAVLADAMSHGFVKITQ 139
Query: 227 LVCLVIDEAHRATGNYAYCTAIRELM----------SVPVQLRILALTATP--GSKQQTI 274
L ++ DEAH + +++ +VP +IL LTA+P S +Q +
Sbjct: 140 LGLMIFDEAHHCMRRHPANKIMQDFYHPALERHGAEAVP---KILGLTASPVVRSNRQEL 196
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELI--------EVEMGQEAVEINNRIWEV 326
I NL R + + ++ H ++ I ++++G + ++ W
Sbjct: 197 LKIESNLDAVCKTPRTHRSE-LMTHTHRPHLQQILFTPVLLDDLQVGSKTLKALVSAWTS 255
Query: 327 IR----PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK-FGEVEA-YF 380
+R PY +L L R Q + D+ ++ +L + GE A YF
Sbjct: 256 LRLEDDPYIKKLRK-SPLDGRALQKVLESGKTYCNDQLKRFATRSLHIFEELGEWAADYF 314
Query: 381 GALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKL-----LMQQSI 435
I + E L K + G+ A M ++ + L L +I
Sbjct: 315 -----------------IHASIEQL--KARAGNSADTMGWTDEEKAYLLDIVSKLPIPNI 355
Query: 436 SHGAQSPK---LSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK-- 490
P +S L++ TK + +IF+ R +V +M L +I + K
Sbjct: 356 DLTHSDPDRIPISSKFRSLLEFLDTKGEPNFSGLIFAKQRATV-SVMEKLLSIHPVTKHR 414
Query: 491 --ATEFIGQSSGKASKGQSQ----KVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
F+G S G + + ++Q+ L +FR G N+I+AT + EEG+DI +V
Sbjct: 415 FRCASFVGWSGGGSKDVLGELLDARMQRDTLSEFRTGQKNLIIATDVLEEGIDISACSVV 474
Query: 545 ICFDANVSPLRMIQRMGR 562
+CFD + +QR GR
Sbjct: 475 VCFDKPPNLKSFVQRRGR 492
>gi|336367926|gb|EGN96270.1| hypothetical protein SERLA73DRAFT_112480 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1460
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 115/510 (22%), Positives = 204/510 (40%), Gaps = 83/510 (16%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF------PDGKIVFAAPSRP 164
R YQ I + A SN + AL TG GKT I+ ++I +W IVF P
Sbjct: 18 RRYQEEIFRRAQNSNVIAALDTGSGKTFISILLI----KWIVLQEKAKRKVIVFLVPKVA 73
Query: 165 LVMQQIE--ACHNIVGIPQ-EWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
LV QQ + A H + + ++D+ + SF ++ V +T Q+ +
Sbjct: 74 LVKQQADSIAAHTPLRVKMFHGSLDLDLTDRANWKKSFEQSD-VVVMTAQIFLNILTHSH 132
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRE-LMSVPV-QLRILALTATP--------GSKQ 271
++ + L+ DE H N+AY + E ++P + ++ +TA+P GS
Sbjct: 133 WSVEKVSLLIFDECHHTRKNHAYNGIMHEYFQTIPSDRPKVFGMTASPIWNPKDAEGS-L 191
Query: 272 QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIE-------------------VEM 312
T++ +D I+ E+ E ++ R +E+I+ + +
Sbjct: 192 ATLEKNLDATVIAVREHVEELQENSP-----RPVEVIKEFSPPSDTYDYLYPTLWDCLSL 246
Query: 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK 372
AVEIN + ++ Y +++G DL D + + +++
Sbjct: 247 FTNAVEINIPVDKLHMKYQMTRNSLGAFS---------ADLFLYTD-IKTRLIHFIDELE 296
Query: 373 FGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQ-----GSFARFMSKNEDIRKV 427
+ E + G +HI SS + + + L+Q F F ++ V
Sbjct: 297 SSQNETFLGLDGFDHHIDVDESSESAQSQFPAISPDLEQIDAILSEFRPFFDSGTEVPAV 356
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD 487
+ + +PK++ ++EVL++H+ I+F R + L I +
Sbjct: 357 PI----PVPLAWCTPKVNALVEVLLEHYSPT----FHAIVFVEQRQVAACLAKILPCIPE 408
Query: 488 L---VKATEFIGQSSGKA--------SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGL 536
L V+ E +G + ++G QQ +E FR G N++VATS+ EEGL
Sbjct: 409 LRGYVRCAELVGHGANHGHGPVVNSNARGMGLARQQDTVELFRQGKLNLLVATSVAEEGL 468
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
D+V+ FD + +Q GR K
Sbjct: 469 HFPACDIVVRFDPIQHMVGYVQSRGRARTK 498
>gi|354459713|pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 122/520 (23%), Positives = 213/520 (40%), Gaps = 86/520 (16%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLV 166
R+YQ + A NT++ PTG GKT ++ ++ + + FP GK+VF A P+
Sbjct: 6 RNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVY 65
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218
QQ +NI I + ++ Q + + +TPQ+L ++
Sbjct: 66 EQQATVFSRYFERLGYNIASISGATSDSVSVQ-------HIIEDNDIIILTPQILVNNLN 118
Query: 219 SGTC-LMKYLVCLVIDEAHRATGNYAYC-TAIRELMSVPVQLR-----ILALTATPG--- 268
+G + + DE H + N+ Y R L + R ++ LTA+ G
Sbjct: 119 NGAIPSLSVFTLXIFDECHNTSKNHPYNQIXFRYLDHKLGESRDPLPQVVGLTASVGVGD 178
Query: 269 --SKQQTIQHI------IDNLYIST-------LEYRNESDQDVSSYVHNRKIELIEVEMG 313
+ ++ QHI +D I+T LE Q +S V +R + +
Sbjct: 179 AKTAEEAXQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238
Query: 314 QEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLS----------PVDLLNSRDKFRQA 363
Q E ++ + + L + +QNR++ T + DK ++
Sbjct: 239 QLXKETE----KLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQXADKEEES 294
Query: 364 PPPNLPQIKFGEVEAYFGALI---------TLYHIRRLLSSHGIR-PAYEMLEEKLKQGS 413
+ + Y ALI L +++ H +R A++ E +L +
Sbjct: 295 RVCKALFLYTSHLRKYNDALIISEDAQXTDALNYLKAFF--HDVREAAFDETERELTR-- 350
Query: 414 FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRG 473
RF K E++ KV S ++PKL + VL + + K ++ I+F R
Sbjct: 351 --RFEEKLEELEKV------SRDPSNENPKLRDLYLVLQEEYHLK--PETKTILFVKTRA 400
Query: 474 SVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIVATS 530
V + + L +K G+ + G + Q+ VLE FRA G N+++ATS
Sbjct: 401 LVDALKKWIEENPALSFLKPGILTGRGRTNRATGXTLPAQKCVLEAFRASGDNNILIATS 460
Query: 531 IGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
+ +EG+DI E +LVI ++ + ++ IQ GR GR D +
Sbjct: 461 VADEGIDIAECNLVILYEYVGNVIKXIQTRGR-GRARDSK 499
>gi|224135595|ref|XP_002327257.1| predicted protein [Populus trichocarpa]
gi|222835627|gb|EEE74062.1| predicted protein [Populus trichocarpa]
Length = 119
Score = 76.3 bits (186), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/99 (48%), Positives = 58/99 (58%), Gaps = 14/99 (14%)
Query: 17 EFDWEAAVREIDTACQSSKPSTS-----NSTNFNLCSKANKKPSTCKQSTLDKFFGNLGP 71
EFDWEAAVREID + SS T N++++ C+K TCKQSTLDKF G P
Sbjct: 1 EFDWEAAVREIDASSSSSSNFTPPVNILNNSSYYSCTKT----GTCKQSTLDKFIGRANP 56
Query: 72 KPQGTEEF--NEGSSF---DESLCHVQIDAEAAKTWIYP 105
T E ++G+ D C V+IDAEAAKTWIYP
Sbjct: 57 PVNPTVEVRHHQGNGIINSDGRPCCVEIDAEAAKTWIYP 95
>gi|111226989|ref|XP_001134628.1| hypothetical protein DDB_G0294407 [Dictyostelium discoideum AX4]
gi|90971302|gb|EAS66962.1| hypothetical protein DDB_G0294407 [Dictyostelium discoideum AX4]
Length = 837
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 11/206 (5%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
RDYQ + + ++ + + LPTGLGKTLI+ +VI + P +IVF PLV+QQ
Sbjct: 233 RDYQCELYRKSMEKDIICCLPTGLGKTLISCLVIKKMKQLNPSKQIVFIVDRIPLVIQQS 292
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230
+ G+ ++ K + V V + K + +G + +
Sbjct: 293 DVIETETGLKV-----LSAHGETFKPVQLKQRFDVLVVIGDLFNKLLSNGDLNILSFCLI 347
Query: 231 VIDEAHRATGNYAYCTAIRE-LMSVP--VQLRILALTATPGSKQQTIQHIIDNLYISTL- 286
VIDEAH +++ +R+ L ++P +IL LTA+P K+ ++ IS +
Sbjct: 348 VIDEAHHIVKEHSFAKLLRDKLNTIPEICHPKILGLTASPAGKKDFFNTLLSLKLISKVS 407
Query: 287 --EYRNESDQDVSSYVHNRKIELIEV 310
E ++Q + Y++ + I++I +
Sbjct: 408 RCEIIKPTNQSIIPYINQKNIKIIPI 433
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI--GD---LVKATEFIGQ 497
KL L++L D K+ D K IIF R + + + L + GD +K +G
Sbjct: 566 KLEIALQIL-DEKKSDDLK---AIIFVKTRDVAKKVYSLLDQLRMGDRFSFIKPNLVVGH 621
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
S G S Q+ +E+FR+ NVIVATS+ EEG D+ E ++VI D + I
Sbjct: 622 GS---IGGMSISSQKKAIEEFRSDQCNVIVATSVVEEGFDVPECNIVIRLDPPTTVTANI 678
Query: 558 QRMGRTGRKHDGRIPHIFK 576
Q GR R D I K
Sbjct: 679 QSRGRL-RNRDSYFYGIVK 696
>gi|296202916|ref|XP_002748669.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 1
[Callithrix jacchus]
Length = 678
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 125/524 (23%), Positives = 204/524 (38%), Gaps = 124/524 (23%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQQEVITPALEGKNIIIWLPTGAGKTRAAAYVARQHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + WT+ ++G + P RA+F R + T ++L+ + S
Sbjct: 63 HGEEFSRM--LDGRWTMTTLSGDMGP--RAAFGHLARCHDLLICTAKLLQMALTSPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSKQQT-- 273
+ +V+DE H + Y + + + + +Q ++L LTA+PG+ +
Sbjct: 119 HVELTAFSLIVVDECHHTHKDTVYNIIMSQYLELKLQRARPLPQVLGLTASPGTGGASKL 178
Query: 274 ---IQHI------IDNLYIST-------LEYRNES-----------DQDVSSYVHNRKIE 306
I H+ +D I++ L+ N+ QD + + ++
Sbjct: 179 DGAINHVLQLCANLDTWCITSPQNCFPQLQEHNQQPCKQYDLCQRRSQDPFGDLLKKLMD 238
Query: 307 LI--EVEMGQEAVEINNRIWEVIRPYTSRLSAI-GLLQNRDY--------------QTLS 349
I +EM + + + + +E S +A+ GLL+ R Y T+
Sbjct: 239 QIHDHLEMPELSRDFGKQTYEQQVVKLSETAALAGLLEQRVYALHLRRYNDALLIHDTVR 298
Query: 350 PVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALIT-----LYHIRRLLSSHGIR-PAYE 403
VD L + F Q QI E + AL L H L++HG+ P E
Sbjct: 299 AVDALAALQNFYQREHATKTQILCA--ERWLLALFNDHKDMLAH----LATHGLENPKLE 352
Query: 404 MLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHS 463
MLE K+L +Q F++ D
Sbjct: 353 MLE---------------------KILQKQ---------------------FRSSDS--P 368
Query: 464 RVIIFSNFRGSVRDIMNALATIGDL----VKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519
R IIF+ R S ++ L L ++ IG + +QK QQ V+ KFR
Sbjct: 369 RGIIFTRTRQSAHSLLLWLQQQPGLQTVDIRPQLLIGSGNSSQRTHMTQKDQQEVIRKFR 428
Query: 520 AGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
G N++VATS+ EEGLDI + ++V+ + + + M+Q GR
Sbjct: 429 DGTLNLLVATSVAEEGLDIPQCNVVVRYGLLTNEISMVQARGRA 472
>gi|317035030|ref|XP_001400925.2| ATP-dependent helicase dcl2 [Aspergillus niger CBS 513.88]
Length = 1407
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 115/498 (23%), Positives = 197/498 (39%), Gaps = 71/498 (14%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + + +L N +V + TG GKT IA + I P I F P+ L +QQ
Sbjct: 20 RSYQVEMFEASLKENIIVTMGTGSGKTHIALLRIIKELESNPHKLIWFLTPTVALCLQQF 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFW----KTKRVFFVTPQVLEKDIQSGTCLMKY 226
+ + + + T+ ++ W K +V T VL + G +
Sbjct: 80 KFLSDNIPAVRARTLTSLDKVELWTEQPVWDAILKEMQVVVSTHAVLADAMSHGFVKITQ 139
Query: 227 LVCLVIDEAHRATGNYAYCTAIRELM----------SVPVQLRILALTATP--GSKQQTI 274
L ++ DEAH + +++ +VP +IL LTA+P S +Q +
Sbjct: 140 LGLMIFDEAHHCMRRHPANKIMQDFYHPALERHGAEAVP---KILGLTASPVVRSNRQEL 196
Query: 275 QHIIDNLYISTLEYRNESDQDVSSYVHNRKIELI--------EVEMGQEAVEINNRIWEV 326
I NL R + + ++ H ++ I ++++G + ++ W
Sbjct: 197 LKIESNLDAVCKTPRTHRSE-LMTHTHRPHLQQILFTPVLLDDLQVGSKTLKALVSAWTS 255
Query: 327 IR----PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK-FGEVEA-YF 380
+R PY +L L R Q + D+ ++ +L + GE A YF
Sbjct: 256 LRLEDDPYIKKLRK-SPLDGRALQKVLESGKTYCNDQLKRFATRSLHIFEELGEWAADYF 314
Query: 381 GALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKL-----LMQQSI 435
I + E L K + G+ A M ++ + L L +I
Sbjct: 315 -----------------IHASIEQL--KARAGNSADTMGWTDEEKAYLLDIVSKLPIPNI 355
Query: 436 SHGAQSPK---LSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK-- 490
P +S L++ TK + +IF+ R +V +M L +I + K
Sbjct: 356 DLTHSDPDRIPISSKFRSLLEFLDTKGEPNFSGLIFAKQRATV-SVMEKLLSIHPVTKHR 414
Query: 491 --ATEFIGQSSGKASKGQSQ----KVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
F+G S G + + ++Q+ L +FR G N+I+AT + EEG+DI +V
Sbjct: 415 FRCASFVGWSGGGSKDVLGELLDARMQRDTLSEFRTGQKNLIIATDVLEEGIDISACSVV 474
Query: 545 ICFDANVSPLRMIQRMGR 562
+CFD + +QR GR
Sbjct: 475 VCFDKPPNLKSFVQRRGR 492
>gi|380481939|emb|CCF41547.1| RNase3 domain-containing protein [Colletotrichum higginsianum]
Length = 1588
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 122/487 (25%), Positives = 198/487 (40%), Gaps = 71/487 (14%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF-RWFPD---GKI----VFAAPS 162
R+YQ + + A NT+V L TG GKTLIA +++ + + D GK+ F
Sbjct: 170 REYQIELFEKAKKKNTIVVLNTGSGKTLIAGLLLRHILEKEIEDRAAGKLKRIAFFLVDK 229
Query: 163 RPLVMQQIEACHNIVGIPQEWTI-----DMTGQISPTKRASFWKTK----RVFFVTPQVL 213
LV QQ H ++ E + DM ++ + FW + V T +L
Sbjct: 230 VSLVFQQ----HAVLDCNLEHPVGRFCGDMVDEMWSRE---FWAQQFEENMVIVCTAAIL 282
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIREL-MSVP---VQLRILALTATPGS 269
+K + M + LV DEAH N+ Y I++ + VP ++ RIL +TA+P
Sbjct: 283 QKCLTHSYIRMNQINLLVFDEAHHTKKNHPYARIIKDFYIKVPAKEMRPRILGMTASPVD 342
Query: 270 KQQTIQHIIDNLYISTL---EYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEV 326
Q ++ I + L E S++ + S R I IEV V
Sbjct: 343 AQTDVK--IATAQLECLLHSEIATVSEESLYSNSTARNITEIEVHYSSLPV--------- 391
Query: 327 IRPYTSRLSAIGLLQNRDYQTLSPVDLLN---SRD-KFRQAPPPNLPQIKFGEVEAYFGA 382
PY ++L YQ +S + N S++ F +A +L + ++
Sbjct: 392 --PYETKL----------YQKVSALVGCNPHFSKELSFAKAATSSLGP---WAADRFWQL 436
Query: 383 LITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSP 442
+T I RL + Y L+ K+ + + K D+ + + + S
Sbjct: 437 FLTDETILRLAQRTDM--TYSGLKSNDKETAAVQ---KLRDVIQGHEFNSATPTLDQLSI 491
Query: 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS---VRDIMNALATIGDLVKATEFIGQSS 499
K+ ++ E L F T P + R I+F R + + D+ + +G +
Sbjct: 492 KVLRLWEELKLRF-TNGPGY-RCIVFVEMRLTAVLLADLFKQEGIKLPYLSPAMLVGSQA 549
Query: 500 GKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQR 559
S K Q + KFR N + AT + EEGLDI + +LV+ FD S ++ IQ
Sbjct: 550 ATGLANMSFKQQVLTIHKFRQAEVNCLFATQVAEEGLDIPDCNLVMRFDLYKSVIQYIQS 609
Query: 560 MGRTGRK 566
GR R+
Sbjct: 610 KGRARRQ 616
>gi|157272171|gb|ABV26717.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide [Sus scrofa]
Length = 943
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 116/508 (22%), Positives = 218/508 (42%), Gaps = 67/508 (13%)
Query: 111 RDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R+YQ + A NT++ PTG GKT ++ ++ + + FP G K+VF A P+
Sbjct: 243 RNYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGRKGKVVFFAIQLPVY 302
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRA-SFWKTKRVFFVTPQVLEKDI 217
QQ + + GI +G S T + + +TPQ+L +
Sbjct: 303 EQQKSVFSKHFERLGYKVAGI--------SGATSDTVCVEQIVENNDIIILTPQILVNCL 354
Query: 218 QSGTC-LMKYLVCLVIDEAHRATGNYAYCTAI-----RELMSVPVQL-RILALTATPG-- 268
+GT + ++ DE H + + Y + R+L L +++ LTA+ G
Sbjct: 355 TNGTIPSLSVFTLMIFDECHNTSKQHPYNVIMFNYLDRKLGGSSDSLPQVIGLTASVGVG 414
Query: 269 ---SKQQTIQHI------IDNLYISTLEYRNESDQDVSSYVHN--RKIEL--------IE 309
+K + ++I +D I+T+ E ++V RK+EL I
Sbjct: 415 DAKNKAEATEYICKLCASLDTSVIATVRDNLEELEEVVYKPQKFFRKVELRTTDRFKCII 474
Query: 310 VEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDK---FRQAPPP 366
++ E + I+E + T L + +QN ++ T + K Q P
Sbjct: 475 SQLMMEIESLAKSIFEELGTIT--LGGLFQIQNSNFGTQKYEQWIVKVQKECAVFQMPDK 532
Query: 367 NLPQIKFGEVEAYFGALITLYHIRRLLSSHG-IRPAYEMLEEKLKQGSFARFMSKNEDI- 424
+ + +Y L +Y+ +++ H ++ A + L++ + A F +D+
Sbjct: 533 DKESRICKALFSYMSHL-RIYNDALIINEHARMKDALDYLKDFFRNIRAAGFDEIEQDLT 591
Query: 425 ----RKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMN 480
K++ L SI ++PKL + +L + + +P+ +R I+F R V +
Sbjct: 592 QRFEEKLQELESISIDPSNENPKLRDLCFILQEEYHL-NPE-TRTILFVKTRALVDALKK 649
Query: 481 ALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN-VIVATSIGEEGLD 537
+ L +K + G+ + G + Q+ VL+ FR N +++ TS+ +EG+D
Sbjct: 650 WIKENPKLSFLKPSILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADEGID 709
Query: 538 IMEVDLVICFDANVSPLRMIQRMGRTGR 565
I + +LVI ++ + ++MIQ GR GR
Sbjct: 710 IAQCNLVILYEYVGNVIKMIQTRGR-GR 736
>gi|356460981|ref|NP_998969.2| probable ATP-dependent RNA helicase DDX58 [Sus scrofa]
gi|224176124|dbj|BAH23574.1| DEAD box polypeptide 58 [Sus scrofa]
Length = 943
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 116/508 (22%), Positives = 218/508 (42%), Gaps = 67/508 (13%)
Query: 111 RDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R+YQ + A NT++ PTG GKT ++ ++ + + FP G K+VF A P+
Sbjct: 243 RNYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGRKGKVVFFAIQLPVY 302
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRA-SFWKTKRVFFVTPQVLEKDI 217
QQ + + GI +G S T + + +TPQ+L +
Sbjct: 303 EQQKSVFSKHFERLGYKVAGI--------SGATSDTVCVEQIVENSDIIILTPQILVNCL 354
Query: 218 QSGTC-LMKYLVCLVIDEAHRATGNYAYCTAI-----RELMSVPVQL-RILALTATPG-- 268
+GT + ++ DE H + + Y + R+L L +++ LTA+ G
Sbjct: 355 TNGTIPSLSVFTLMIFDECHNTSKQHPYNVIMFSYLDRKLGGSSDSLPQVIGLTASVGVG 414
Query: 269 ---SKQQTIQHI------IDNLYISTLEYRNESDQDVSSYVHN--RKIEL--------IE 309
+K + ++I +D I+T+ E ++V RK+EL I
Sbjct: 415 DAKNKAEATEYICKLCASLDTSVIATVRDNLEELEEVVYKPQKFFRKVELRTTDRFKCII 474
Query: 310 VEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDK---FRQAPPP 366
++ E + I+E + T L + +QN ++ T + K Q P
Sbjct: 475 SQLMMEIESLAKSIFEELGTIT--LGGLFQIQNSNFGTQKYEQWIVKVQKECAVFQMPDK 532
Query: 367 NLPQIKFGEVEAYFGALITLYHIRRLLSSHG-IRPAYEMLEEKLKQGSFARFMSKNEDI- 424
+ + +Y L +Y+ +++ H ++ A + L++ + A F +D+
Sbjct: 533 DKESRICKALFSYMSHL-RIYNDALIINEHARMKDALDYLKDFFRNIRAAGFDEIEQDLT 591
Query: 425 ----RKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMN 480
K++ L SI ++PKL + +L + + +P+ +R I+F R V +
Sbjct: 592 QRFEEKLQELESISIDPSNENPKLRDLCFILQEEYHL-NPE-TRTILFVKTRALVDALKK 649
Query: 481 ALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN-VIVATSIGEEGLD 537
+ L +K + G+ + G + Q+ VL+ FR N +++ TS+ +EG+D
Sbjct: 650 WIKENPKLSFLKPSILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADEGID 709
Query: 538 IMEVDLVICFDANVSPLRMIQRMGRTGR 565
I + +LVI ++ + ++MIQ GR GR
Sbjct: 710 IAQCNLVILYEYVGNVIKMIQTRGR-GR 736
>gi|409076508|gb|EKM76879.1| hypothetical protein AGABI1DRAFT_77978 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1528
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 121/533 (22%), Positives = 216/533 (40%), Gaps = 99/533 (18%)
Query: 107 NVPV-RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPL 165
N+P R YQ + + ++ N ++A+ TG GKT IA + I + P F AP+ L
Sbjct: 11 NIPTTRGYQQEMLEESIKHNIIIAMDTGSGKTHIAVLRIKHEVEREPSKAAWFFAPTVAL 70
Query: 166 VMQQ--IEACHNIVGIPQEWTIDMTGQISP--TKRASFWK----TKRVFFVTPQVLEKDI 217
QQ + H V + ++G + P K A W+ T RV TPQV +
Sbjct: 71 CAQQKAVIQTHLPVSVGL-----VSGALEPDQWKSAELWERVLNTHRVIVSTPQVFLDAL 125
Query: 218 QSGTC-LMKYLVCLVIDEAHRATGNYAYCTAI---RELMSVPVQLR-----------ILA 262
+ L K + LV DEAH ATG++ Y + + P LR +L
Sbjct: 126 RHAYIDLGKDISLLVFDEAHHATGDHPYARIMDFYHRIEERPANLRLYGISQVSRPYVLG 185
Query: 263 LTATP---GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEI 319
LTA+P G ++ + NL + + +++ +VH + + E +A
Sbjct: 186 LTASPIYGGDVVKSFNMLEKNL-DCIIRAPRRTRAELAQFVHRPIFQHVMYEQWPDA--- 241
Query: 320 NNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAY 379
P+++ L+ I + R Q +++ R K A P + +
Sbjct: 242 ---------PFSTNLTVISNIV-RSLQIEKDPYVISLRQKLATAKPLTSEYFRLDQ---- 287
Query: 380 FGALITLYHIRRLLSSHGI----RPAYEML---------------EEKLKQGS--FARFM 418
L ++ G+ R A ++L EK ++ + F M
Sbjct: 288 --KLSITIRTQKTFVFKGLRDFERAASDILLDLGPWAADWYVWRIAEKAREAANPFNNIM 345
Query: 419 SKNEDIRKVKLL------MQQSISHGAQ------SPKLSKMLEVLVDHFKTKDPKHSRV- 465
+ +D K LL + +S+G + S KL +++E L++ K + K V
Sbjct: 346 ASWKDTEKSHLLKLLDSAVLTPVSYGEEDIMCDCSDKLQRLIETLLNE-KMETEKRDEVY 404
Query: 466 --IIFSNFRGSV---RDIMNALATIGDLVKATEFIGQSSGK-------ASKGQSQKVQQA 513
++F R +V +++N ++ + +G S S+ +++ Q+
Sbjct: 405 SGLVFVQRRDTVIALAEVLNNHPFTKNIFRIGFLLGTSDSSRRHSFLDISRKLARETQEE 464
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
+ +FR+G N+I+AT++ EEG+DI VI +D + Q GR ++
Sbjct: 465 TMAEFRSGDLNLIIATAVAEEGIDIQACGSVIRWDLPQNMASWAQSRGRARKR 517
>gi|403304472|ref|XP_003942820.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 2
[Saimiri boliviensis boliviensis]
Length = 578
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F++ D R IIF+ R S ++ L L ++A
Sbjct: 336 THGLENPKLEMLEKILQKQFRSSDS--PRGIIFTRTRQSAHSLLLWLQQQPGLRTVDIRA 393
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +QK QQ V+ FR+G N++VATS+ EEGLDI + ++V+ +
Sbjct: 394 QLLIGSGNSSQSTHMTQKDQQEVIRNFRSGTLNLLVATSVAEEGLDIPQCNVVVRYGLLT 453
Query: 552 SPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 454 NEISMVQARGR 464
>gi|317039132|gb|ADU87114.1| melanoma differentiation-associated protein 5 [Paralichthys
olivaceus]
gi|321265893|gb|ADW78349.1| melanoma differentiation-associated protein 5 [Paralichthys
olivaceus]
Length = 988
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 125/521 (23%), Positives = 212/521 (40%), Gaps = 84/521 (16%)
Query: 107 NVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFF-RWFPDG---KIVFAAP 161
++ +RDYQ + + AL + N ++ LPTG GKT +A + R +G K+V
Sbjct: 287 DICLRDYQMEVARPALEAKNIIICLPTGSGKTRVAVYITKEHLDRRRAEGQPGKVVMLVN 346
Query: 162 SRPLVMQQIEACHNIVGIPQEWTIDMTG----QISPTKRASFWKTKRVFFVTPQVLEKDI 217
PLV Q A P+ ++G +IS T+ K V T Q+LE +
Sbjct: 347 KVPLVEQHYSAEFLPFLKPKYKVERVSGDCQLKISFTE---ILKKNDVIICTAQILENHL 403
Query: 218 QSGT------CLMKYLVCLVIDEAHRATGNYAYCTAI-----------------RELMSV 254
+ + L ++IDE H Y + RE M +
Sbjct: 404 ERSNKEEDEGVKLSDLTLIIIDECHHTQKGEVYNHIMMRYLKQKHKNIKWKKEQREPMPL 463
Query: 255 PVQLRILALTATPG-----SKQQTIQHIID---NLYISTLEYRNESDQDVSSYVHNRKIE 306
P +IL LTA+PG + ++ ++HI+ NL S++ + D N+
Sbjct: 464 P---QILGLTASPGVGGAKNMKKAVEHILRICANLDASSIMTSSLGDYKKQP---NKTTL 517
Query: 307 LIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP 366
+E + ++ +I I + + L R Q + + R+A
Sbjct: 518 AVEDRIEDPFGDVIKKIMNAIHAHAKLSTNCDLGSQRYEQWIVETE--------REAAAK 569
Query: 367 NLPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEE----------KLKQGSFA 415
+++ E + + L +I R+ + G Y E+ K++
Sbjct: 570 EDHKVRVCAEYLRQYSEGLNLSNIIRMHDAFGFLNEYYEKEKNKKMNPDEEHKIQITDTE 629
Query: 416 RFMSKNEDIRKVKLLMQQSISHGAQ--SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRG 473
RF+ K +L QS++ Q + LSK+ ++ F +++ +R IIF+ R
Sbjct: 630 RFLFNVFKENKEEL---QSLAGNPQYENDSLSKLRCKILHEFSSRE--EARGIIFTKTRR 684
Query: 474 SVRDIMNAL------ATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
S + + + A IG VKA+ IG K + Q+ VL+ F G N+++
Sbjct: 685 SAIALSHWIQENSKFADIG--VKASYVIGGGDQSVVKPMTPAEQKDVLKNFHNGDVNLLI 742
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD 568
AT++ EEGLDI + VI + + + MIQ GR GR D
Sbjct: 743 ATTVAEEGLDIPACNFVIRYGLVTNEISMIQAEGR-GRAED 782
>gi|297273051|ref|XP_002800519.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like isoform 2
[Macaca mulatta]
Length = 661
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F++ D R IIF+ R S ++ L L ++A
Sbjct: 326 THGPENPKLEMLEKILQRQFRSSDS--PRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIRA 383
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V+ KFR G N++VATS+ EEGLDI + ++V+ +
Sbjct: 384 QLLIGAGNSSQSTHMTQRDQQEVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVVRYGLLT 443
Query: 552 SPLRMIQRMGRT 563
+ + M+Q GR
Sbjct: 444 NEISMVQARGRA 455
>gi|402900290|ref|XP_003913111.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 [Papio anubis]
Length = 578
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F++ D R IIF+ R S ++ L L ++A
Sbjct: 336 THGPENPKLEMLEKILQRQFRSSDS--PRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIRA 393
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V+ KFR G N++VATS+ EEGLDI + ++V+ +
Sbjct: 394 QLLIGAGNSSQSTHMTQRDQQEVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVVRYGLLT 453
Query: 552 SPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 454 NEISMVQARGR 464
>gi|383412907|gb|AFH29667.1| putative ATP-dependent RNA helicase DHX58 [Macaca mulatta]
Length = 678
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F++ D R IIF+ R S ++ L L ++A
Sbjct: 343 THGPENPKLEMLEKILQRQFRSSDS--PRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIRA 400
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V+ KFR G N++VATS+ EEGLDI + ++V+ +
Sbjct: 401 QLLIGAGNSSQSTHMTQRDQQEVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVVRYGLLT 460
Query: 552 SPLRMIQRMGRT 563
+ + M+Q GR
Sbjct: 461 NEISMVQARGRA 472
Score = 48.1 bits (113), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + WT+ ++G + P RA F R + T ++L+ + S
Sbjct: 63 HGEEFRRM--LDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS 269
+ +V+DE H + Y + + + +Q ++L LTA+PG+
Sbjct: 119 HVELTAFSLIVVDECHHTHKDTVYNVIMSRYLELKLQRARPLPQVLGLTASPGT 172
>gi|109115463|ref|XP_001108799.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like isoform 1
[Macaca mulatta]
gi|355568695|gb|EHH24976.1| Putative ATP-dependent RNA helicase DHX58 [Macaca mulatta]
Length = 678
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F++ D R IIF+ R S ++ L L ++A
Sbjct: 343 THGPENPKLEMLEKILQRQFRSSDS--PRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIRA 400
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V+ KFR G N++VATS+ EEGLDI + ++V+ +
Sbjct: 401 QLLIGAGNSSQSTHMTQRDQQEVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVVRYGLLT 460
Query: 552 SPLRMIQRMGRT 563
+ + M+Q GR
Sbjct: 461 NEISMVQARGRA 472
Score = 48.1 bits (113), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + WT+ ++G + P RA F R + T ++L+ + S
Sbjct: 63 HGEEFRRM--LDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS 269
+ +V+DE H + Y + + + +Q ++L LTA+PG+
Sbjct: 119 HVELTAFSLIVVDECHHTHKDTVYNVIMSRYLELKLQRARPLPQVLGLTASPGT 172
>gi|355754175|gb|EHH58140.1| Putative ATP-dependent RNA helicase DHX58 [Macaca fascicularis]
Length = 678
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F++ D R IIF+ R S ++ L L ++A
Sbjct: 343 THGPENPKLEMLEKILQRQFRSSDS--PRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIRA 400
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V+ KFR G N++VATS+ EEGLDI + ++V+ +
Sbjct: 401 QLLIGAGNSSQSTHMTQRDQQEVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVVRYGLLT 460
Query: 552 SPLRMIQRMGRT 563
+ + M+Q GR
Sbjct: 461 NEISMVQARGRA 472
Score = 47.4 bits (111), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + WT+ ++G + P RA F R + T ++L+ + S
Sbjct: 63 HGEEFRRM--LDGRWTMTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS 269
+ +V+DE H + Y + + + +Q ++L LTA+PG+
Sbjct: 119 HVELTAFSLIVVDECHHTHKDTVYNVIMSRYLELKLQRARPLPQVLGLTASPGT 172
>gi|75050051|sp|Q9GLV6.1|DDX58_PIG RecName: Full=Probable ATP-dependent RNA helicase DDX58; AltName:
Full=DEAD box protein 58; AltName: Full=RHIV-1; AltName:
Full=RIG-I-like receptor 1; Short=RLR-1; AltName:
Full=RNA helicase induced by virus; AltName:
Full=Retinoic acid-inducible gene 1 protein;
Short=RIG-1; AltName: Full=Retinoic acid-inducible gene
I protein; Short=RIG-I
gi|9957597|gb|AAG09428.1|AF181119_1 RNA helicase [Sus scrofa]
Length = 940
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 116/508 (22%), Positives = 217/508 (42%), Gaps = 67/508 (13%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLV 166
R YQ + A NT++ PTG GKT ++ ++ + + FP GK+VF A P+
Sbjct: 242 RKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKFPRGRKGKVVFFAIQLPVY 301
Query: 167 MQQIEAC--------HNIVGIPQEWTIDMTGQISPTKRA-SFWKTKRVFFVTPQVLEKDI 217
QQ + + GI +G S T + + +TPQ+L +
Sbjct: 302 EQQKSVFSKHFERLGYKVAGI--------SGATSDTVCVEQIVENSDIIILTPQILVNCL 353
Query: 218 QSGTC-LMKYLVCLVIDEAHRATGNYAYCTAI-----RELMSVPVQL-RILALTATPG-- 268
+GT + ++ DE H + + Y + R+L L +++ LTA+ G
Sbjct: 354 TNGTIPSLSVFTLMIFDECHNTSKQHPYNVIMFSYLDRKLGGSSDSLPQVIGLTASVGVG 413
Query: 269 ---SKQQTIQHI------IDNLYISTLEYRNESDQDVSSYVHN--RKIEL--------IE 309
+K + ++I +D I+T+ E ++V RK+EL I
Sbjct: 414 DAKNKAEATEYICKLCASLDTSVIATVRDNLEELEEVVYKPQKFFRKVELRTTDRFKCII 473
Query: 310 VEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDK---FRQAPPP 366
++ E + I+E + T L + +QN ++ T + K Q P
Sbjct: 474 SQLMMEIESLAKSIFEELGTIT--LGGLFQIQNSNFGTQKYEQWIVKVQKECAVFQMPDK 531
Query: 367 NLPQIKFGEVEAYFGALITLYHIRRLLSSHG-IRPAYEMLEEKLKQGSFARFMSKNEDI- 424
+ + +Y L +Y+ +++ H ++ A + L++ + A F +D+
Sbjct: 532 DKESRICKALFSYMSHL-RIYNDALIINEHARMKDALDYLKDFFRNIRAAGFDEIEQDLT 590
Query: 425 ----RKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMN 480
K++ L SI ++PKL + +L + + +P+ +R I+F R V +
Sbjct: 591 QRFEEKLQELESISIDPSNENPKLRDLCFILQEEYHL-NPE-TRTILFVKTRALVDALKK 648
Query: 481 ALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN-VIVATSIGEEGLD 537
+ L +K + G+ + G + Q+ VL+ FR N +++ TS+ +EG+D
Sbjct: 649 WIKENPKLSFLKPSILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADEGID 708
Query: 538 IMEVDLVICFDANVSPLRMIQRMGRTGR 565
I + +LVI ++ + ++MIQ GR GR
Sbjct: 709 IAQCNLVILYEYVGNVIKMIQTRGR-GR 735
>gi|148670597|gb|EDL02544.1| DNA segment, Chr 11, Lothar Hennighausen 2, expressed, isoform
CRA_c [Mus musculus]
Length = 533
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM------NA 481
K ++ Q + G ++PKL + +L+ F + P H+R IIF+ R + ++
Sbjct: 335 KNVLGQLAARGPENPKLEMLERILLKQFGS--PGHTRGIIFTRTRQTASSLLLWLRQQPC 392
Query: 482 LATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
L T+G +K IG + S +QK QQ V+++FR G +++VATS+ EEGLDI +
Sbjct: 393 LQTVG--IKPQMLIGAGNTSQSTHMTQKDQQEVIQEFRDGILSLLVATSVAEEGLDIAQC 450
Query: 542 DLVICFDANVSPLRMIQRMGR 562
++V+ + + + M+Q GR
Sbjct: 451 NVVVRYGLLTNEISMVQARGR 471
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V GK+V LV Q
Sbjct: 3 LRPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGKVVVLVNRVHLVSQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E + + + WT+ ++G + RA F R + T ++L+ + S
Sbjct: 63 HAEEFRRM--LDKHWTVTTLSGDMG--SRAGFGLMARSHDLLICTAELLQLALNSSEEDE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSKQQT-I 274
++ +V+DE H + Y T + + ++ ++L LTA+PG+ T +
Sbjct: 119 HVELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKKAEPLPQVLGLTASPGTGGATKL 178
Query: 275 QHIIDNL 281
Q ID++
Sbjct: 179 QGAIDHI 185
>gi|449489290|ref|XP_004158269.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog
3a-like [Cucumis sativus]
Length = 1639
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 120/519 (23%), Positives = 208/519 (40%), Gaps = 116/519 (22%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK----IVFAAPSRPLV 166
R YQ + + + NT+ L TG GKT+IA ++I + I+F AP+ LV
Sbjct: 40 RRYQMEVFEVGMRRNTIAVLGTGSGKTMIAVMLIKEIGKAMKSSSDKKLIIFLAPTVHLV 99
Query: 167 MQQIEACHNIVGIPQEWTI-DMTGQISPTK-RASFWKT----KRVFFVTPQVLEKDIQSG 220
QQ N++ ++ + + G + + W+ + V +TPQ+L ++
Sbjct: 100 HQQF----NVIKDHTDFEVAEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKA 155
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELM----SVPVQLRILALTATPGSKQQTIQH 276
+ + ++IDE HRATGN+ Y ++E S P + +TA+P ++
Sbjct: 156 YFRLGTICLMIIDECHRATGNHPYTKIMKEFYHKSDSKP---KXFGMTASPVIRKGVSSS 212
Query: 277 IIDNLYISTLE-------YRNESDQDVSSYVHNRKIELIEVEMGQ-EAVEINNRIWEVIR 328
+ I+ LE Y E ++V YV + K I E + +E+ +I +
Sbjct: 213 VDCECQIADLESILDAQVYAIEDKKEVEIYVPSAKEICIFYEPAMPQTMELKAKIEALWF 272
Query: 329 PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYH 388
+ + LS NS++ Q + +V++ AL
Sbjct: 273 KFDASLS-------------------NSQEAM---------QGHYKDVDSKLKAL----- 299
Query: 389 IRRLLSSH----------GIRPAYEML------------EEKLKQGSFARFMS------- 419
+RL S H GI AYE + E + + SF ++
Sbjct: 300 KKRLSSDHLKITYCLDELGIMCAYEAIKVLFENVSVPNEESDVYRESFLQYKHFLEEALL 359
Query: 420 --------KNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNF 471
+NE++ + + +++ G SPKL ++L+ L + F + +IF
Sbjct: 360 VIGESLSLENENVPTLGFDLWKAVELGYISPKLFELLQ-LFESFGVS--RQVLCLIF--- 413
Query: 472 RGSVRDIMNALATIGDLVKATEFIGQ------SSGKASKGQ-SQKVQQAVLEKFRAGGYN 524
V I+ A I +VK E + + AS G + KVQ+ LE F G N
Sbjct: 414 ---VERIIAA-NVIERIVKKVENLSHFTVSYVTGCDASVGALAPKVQKETLELFCHGKLN 469
Query: 525 VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
++ +T + EEGL + V+ FD + +Q GR
Sbjct: 470 LLFSTDVVEEGLHVPNCSFVVRFDLPKTVRSYVQSRGRA 508
>gi|90076976|dbj|BAE88168.1| unnamed protein product [Macaca fascicularis]
Length = 488
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F++ D R IIF+ R S ++ L L ++A
Sbjct: 252 THGPENPKLEMLEKILQRQFRSSDS--PRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIRA 309
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V+ KFR G N++VATS+ EEGLDI + ++V+ +
Sbjct: 310 QLLIGAGNSSQSTHMTQRDQQEVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVVRYGLLT 369
Query: 552 SPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 370 NEISMVQARGR 380
Score = 47.8 bits (112), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKQHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + WT+ ++G + P RA F R + T ++L+ + S
Sbjct: 63 HGEEFRRM--LDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS 269
+ +V+DE H + Y + + + +Q ++L LTA+PG+
Sbjct: 119 HVELTAFSLIVVDECHHTHKDTVYNVIMSRYLELKLQRARPLPQVLGLTASPGT 172
>gi|260809266|ref|XP_002599427.1| hypothetical protein BRAFLDRAFT_249506 [Branchiostoma floridae]
gi|229284705|gb|EEN55439.1| hypothetical protein BRAFLDRAFT_249506 [Branchiostoma floridae]
Length = 672
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 113/516 (21%), Positives = 209/516 (40%), Gaps = 96/516 (18%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIVFAAPSRPLVM 167
+R YQ + + AL NT++ PTG GKT +A + + ++VF PLV
Sbjct: 1 MRGYQMELAEQALQGRNTIICAPTGSGKTRVAIKITRDHLEDVDARRRVVFLVNKVPLVE 60
Query: 168 QQIEAC-------HNIVGIPQEWTIDM-TGQISPTKRASFWKTKRVFFVTPQVLEKDIQS 219
QQ +A ++I+ + E D+ G+ P V +T QVLE ++
Sbjct: 61 QQYKAFSEYLSPKYDILPLSGETAADIPVGETLPDYD--------VIILTAQVLENALRD 112
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR-------ILALTATPG---- 268
+ L+ DE H N Y + + V+++ I+ LTA+ G
Sbjct: 113 ELISLDTFSMLIFDECHHCQKNDPYNAIMTRYIKQKVEMKSSISLPQIIGLTASLGVGKA 172
Query: 269 -SKQQTIQHII------DNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINN 321
+++ ++HI+ D +IS + VE E + N
Sbjct: 173 KGQKEAVEHILGACANLDAAWISQV-----------------------VEHKDELRKYNQ 209
Query: 322 RIWEVIRPYTSR-----LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQI----- 371
+ E ++P + R I ++ TL+ +L R + +QA + +
Sbjct: 210 KPDEEVKPVSGRSEDPFADMINMIMEDIEGTLAIEELKPPRQREKQAYEQWVVTLARKGA 269
Query: 372 --KFGEVEAYFGALITLYHIRRLLSSHGI------RPAYEMLEEKLKQGSFARFMSKNED 423
K V A T H+R+ + I + A + L++ + A F +ED
Sbjct: 270 ILKNKRVSRAIHAATT--HLRKYFDALAINADARTKDALQYLDKFVTGLQEAGFDETDED 327
Query: 424 IRK-----VKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDI 478
+ K + L + + +PKL ++ +++ ++ K SR ++F R +
Sbjct: 328 LVKHFTEAKERLQEYAADEKYSNPKLDQLKYMILQAYEEK--PDSRCLLFCKTRALTIAL 385
Query: 479 MNALATIGDLVKAT--EFIGQSSGKASKGQ-------SQKVQQAVLEKFRAGGYNVIVAT 529
+ + DL K +G + +++ G+ +Q Q +LE F GG ++++T
Sbjct: 386 LTWMQEDPDLRKLNPGRLVGAGASESTGGEQLVNHCMTQNQQVELLEMFTTGGNKIVIST 445
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
S+ EEG+DI + + V +D + + +Q GR GR
Sbjct: 446 SVAEEGIDIAKCNFVFRYDYVGNEIGKVQTRGR-GR 480
>gi|148670595|gb|EDL02542.1| DNA segment, Chr 11, Lothar Hennighausen 2, expressed, isoform
CRA_a [Mus musculus]
Length = 609
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM------NA 481
K ++ Q + G ++PKL + +L+ F + P H+R IIF+ R + ++
Sbjct: 266 KNVLGQLAARGPENPKLEMLERILLKQFGS--PGHTRGIIFTRTRQTASSLLLWLRQQPC 323
Query: 482 LATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
L T+G +K IG + S +QK QQ V+++FR G +++VATS+ EEGLDI +
Sbjct: 324 LQTVG--IKPQMLIGAGNTSQSTHMTQKDQQEVIQEFRDGILSLLVATSVAEEGLDIAQC 381
Query: 542 DLVICFDANVSPLRMIQRMGR 562
++V+ + + + M+Q GR
Sbjct: 382 NVVVRYGLLTNEISMVQARGR 402
>gi|74142314|dbj|BAE31919.1| unnamed protein product [Mus musculus]
Length = 672
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM------NA 481
K ++ Q + G ++PKL + +L+ F + P H+R IIF+ R + ++
Sbjct: 335 KNVLGQLAARGPENPKLEMLERILLKQFGS--PGHTRGIIFTRTRQTASSLLLWLRQQPC 392
Query: 482 LATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
L T+G +K IG + S +QK QQ V+++FR G +++VATS+ EEGLDI +
Sbjct: 393 LQTVG--IKPQMLIGAGNTSQSTHMTQKDQQEVIQEFRDGILSLLVATSVAEEGLDIAQC 450
Query: 542 DLVICFDANVSPLRMIQRMGR 562
++V+ + + + M+Q GR
Sbjct: 451 NVVVRYGLLTNEISMVQARGR 471
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V GK+V LV Q
Sbjct: 3 LRPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGKVVVLVNRVHLVSQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E + + + WT+ ++G + RA F R + T ++L+ + S
Sbjct: 63 HAEEFRRM--LDKHWTVTTLSGDMG--SRAGFGLMARSHDLLICTAELLQLALNSSEEDE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSKQQT-I 274
++ +V+DE H + Y T + + ++ ++L LTA+PG+ T +
Sbjct: 119 HVELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKKAEPLPQVLGLTASPGTGGATKL 178
Query: 275 QHIIDNL 281
Q ID++
Sbjct: 179 QGAIDHI 185
>gi|70608133|ref|NP_084426.2| probable ATP-dependent RNA helicase DHX58 [Mus musculus]
gi|341940441|sp|Q99J87.2|DHX58_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DHX58; AltName:
Full=Probable ATP-dependent helicase LGP2; AltName:
Full=Protein D11Lgp2; AltName: Full=RIG-I-like receptor
3; Short=RLR-3; AltName: Full=RIG-I-like receptor Lgp2;
Short=RLR
Length = 678
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM------NA 481
K ++ Q + G ++PKL + +L+ F + P H+R IIF+ R + ++
Sbjct: 335 KNVLGQLAARGPENPKLEMLERILLKQFGS--PGHTRGIIFTRTRQTASSLLLWLRQQPC 392
Query: 482 LATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
L T+G +K IG + S +QK QQ V+++FR G +++VATS+ EEGLDI +
Sbjct: 393 LQTVG--IKPQMLIGAGNTSQSTHMTQKDQQEVIQEFRDGILSLLVATSVAEEGLDIAQC 450
Query: 542 DLVICFDANVSPLRMIQRMGR 562
++V+ + + + M+Q GR
Sbjct: 451 NVVVRYGLLTNEISMVQARGR 471
Score = 49.7 bits (117), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V GK+V LV Q
Sbjct: 3 LRPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGKVVVLVNRVHLVSQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E + + + WT+ ++G + RA F R + T ++L+ + S
Sbjct: 63 HAEEFRRM--LDKHWTVTTLSGDMG--SRAGFGLMARSHDLLICTAELLQLALNSSEEDE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSKQQT-I 274
++ +V+DE H + Y T + + ++ ++L LTA+PG+ T +
Sbjct: 119 HVELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKKAEPLPQVLGLTASPGTGGATKL 178
Query: 275 QHIIDNL 281
Q ID++
Sbjct: 179 QGAIDHI 185
>gi|13194586|gb|AAK15474.1| unknown [Mus musculus]
gi|13194588|gb|AAK15475.1| unknown [Mus musculus]
gi|20809730|gb|AAH29209.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Mus musculus]
gi|148670596|gb|EDL02543.1| DNA segment, Chr 11, Lothar Hennighausen 2, expressed, isoform
CRA_b [Mus musculus]
Length = 678
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM------NA 481
K ++ Q + G ++PKL + +L+ F + P H+R IIF+ R + ++
Sbjct: 335 KNVLGQLAARGPENPKLEMLERILLKQFGS--PGHTRGIIFTRTRQTASSLLLWLRQQPC 392
Query: 482 LATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
L T+G +K IG + S +QK QQ V+++FR G +++VATS+ EEGLDI +
Sbjct: 393 LQTVG--IKPQMLIGAGNTSQSTHMTQKDQQEVIQEFRDGILSLLVATSVAEEGLDIAQC 450
Query: 542 DLVICFDANVSPLRMIQRMGR 562
++V+ + + + M+Q GR
Sbjct: 451 NVVVRYGLLTNEISMVQARGR 471
Score = 49.7 bits (117), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V GK+V LV Q
Sbjct: 3 LRPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGKVVVLVNRVHLVSQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E + + + WT+ ++G + RA F R + T ++L+ + S
Sbjct: 63 HAEEFRRM--LDKHWTVTTLSGDMG--SRAGFGLMARSHDLLICTAELLQLALNSSEEDE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSKQQT-I 274
++ +V+DE H + Y T + + ++ ++L LTA+PG+ T +
Sbjct: 119 HVELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKKAEPLPQVLGLTASPGTGGATKL 178
Query: 275 QHIIDNL 281
Q ID++
Sbjct: 179 QGAIDHI 185
>gi|403171941|ref|XP_003331118.2| hypothetical protein PGTG_13081 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169641|gb|EFP86699.2| hypothetical protein PGTG_13081 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1431
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 115/496 (23%), Positives = 197/496 (39%), Gaps = 83/496 (16%)
Query: 106 VNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP--------DGKI- 156
+ +P R YQ + + A N ++ TG GKT++A N W + +I
Sbjct: 18 IKIP-RLYQTELLEEAKKRNIIIRADTGTGKTIVAV----NLIAWTAVKTKANNKNHQIQ 72
Query: 157 VFAAPSRPLVMQQIEACHNIVGIPQEWTIDM---TGQISPTKRASFWKTKR--------- 204
F P+RPL QQ E I + T+ + TG + P W ++
Sbjct: 73 AFLVPTRPLAHQQAEY------IQKHCTLRIKAYTGDLQP----ELWNIRKWHSELNEVD 122
Query: 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRE-----LMSVPVQL- 258
V T Q+ I G ++ + L+ DEAH N+ Y +R V+L
Sbjct: 123 VLVSTAQIFYDLISKGYWKLEDVSLLIFDEAHHCRKNHVYNQIMRSHYHRLAKDSTVRLP 182
Query: 259 RILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVE 318
+IL LTA+P I + +++ D+ + ++ EV+ E V
Sbjct: 183 KILGLTASP---------------IWNFKDLEKAESDIKNLQSALAAQIYEVKKHTEDVC 227
Query: 319 INNRIWEVIRPYTSRLSAIGLLQNRDYQTLS--PVDLLNSRDKFRQAPPPNLPQIKFGEV 376
+N + + D+Q LS P D +N A P + I+ +
Sbjct: 228 RHN--------FKPNEQVVYFEPAPDFQQLSHPPWDQINKLLSL-HASPKMIAAIQSVSL 278
Query: 377 E--AYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFA-RFMSKNEDIRKVKLLMQQ 433
+ Y +L L ++ LL+ G + +++ +L ++ R S +++ KL+
Sbjct: 279 DLGTYAYSLAVLDWLKSLLTIGG---SNQLMSGRLVDPNYQERIQSLIKEVE--KLVDID 333
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL---ATIGDLVK 490
I S K+ + ++LV++ + D + I+F R + + L + D ++
Sbjct: 334 DIPENQLSSKVIALYKILVNYKEKDDHNNFLCIVFVERRQHAQLLPILLERNVQLKDFLR 393
Query: 491 ATEFIGQSSGKASK----GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
G SG + K Q + KFR G +N+ +ATS+ EEGLD +VI
Sbjct: 394 PAALTGHGSGNENDLIGIKMDSKTQNRTVAKFRTGEHNLTIATSVAEEGLDFRSCRVVIR 453
Query: 547 FDANVSPLRMIQRMGR 562
FD + IQ GR
Sbjct: 454 FDLITTWKGYIQSRGR 469
>gi|197098648|ref|NP_001124599.1| probable ATP-dependent RNA helicase DHX58 [Pongo abelii]
gi|55725102|emb|CAH89418.1| hypothetical protein [Pongo abelii]
Length = 678
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F++ D R IIF+ R S ++ L L ++A
Sbjct: 343 THGPENPKLEMLEKILQRQFRSSDS--PRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIRA 400
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V+ KFR G N++VATS+ EEGLDI ++V+ +
Sbjct: 401 QLLIGAGNSSQSTHMTQRDQQEVIRKFRDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460
Query: 552 SPLRMIQRMGRT 563
+ + M+Q GR
Sbjct: 461 NEISMVQARGRA 472
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V GK+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGGKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + WT+ ++G + P RA F R + T ++L+ + S
Sbjct: 63 HGEEFRRM--LDGRWTMTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS 269
+ +V+DE H + Y + + + + +Q ++L LTA+PG+
Sbjct: 119 HLELTAFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172
>gi|149408137|ref|NP_001092258.1| probable ATP-dependent RNA helicase DHX58 [Rattus norvegicus]
Length = 678
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 10/138 (7%)
Query: 431 MQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM------NALAT 484
+ Q + G ++PKL + +L+ F + P H+R IIF+ R + ++ L T
Sbjct: 338 LAQFAAQGPENPKLEMLEGILLKQFGS--PDHTRGIIFTRTRQTASSLLLWLRQQPCLQT 395
Query: 485 IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
+ +K IG + S +QK QQ V+++FR G N++VATS+ EEGLDI + ++V
Sbjct: 396 VN--IKPQMLIGAGNTGQSTHMTQKDQQEVIQEFRDGKLNLLVATSVAEEGLDIAQCNVV 453
Query: 545 ICFDANVSPLRMIQRMGR 562
+ + + + M+Q GR
Sbjct: 454 VRYGLLTNEISMVQARGR 471
Score = 47.8 bits (112), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V GK+V LV Q
Sbjct: 3 LRPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGKVVVLVNRVHLVNQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E + + ++WT+ ++G + RA F R + T ++L ++S
Sbjct: 63 HAEEFRRM--LDKQWTVTTLSGDMG--SRAGFGLLARSHDLLICTAELLHLALKSSEEDE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSKQQT-I 274
+ +V+DE H + Y T + + ++ ++L LTA+PG+ T +
Sbjct: 119 HVELTEFSLIVVDECHHTHKDTIYNTILSRYLEHKLKKAKPLPQVLGLTASPGTGGATKL 178
Query: 275 QHIIDNL 281
Q ID++
Sbjct: 179 QGAIDHI 185
>gi|359320815|ref|XP_003639433.1| PREDICTED: probable ATP-dependent RNA helicase DDX58-like [Canis
lupus familiaris]
Length = 923
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 111/511 (21%), Positives = 218/511 (42%), Gaps = 78/511 (15%)
Query: 111 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLV 166
R+YQ + A NT++ PTG GKT +A ++ + + FP G KIVF A P+
Sbjct: 242 RNYQLELALPAKEGKNTIICAPTGCGKTFVALLICEHHLKKFPQGQKGKIVFFAIQIPVY 301
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRA-SFWKTKRVFFVTPQVLEKDIQSGTC-LM 224
QQ ++G S + + +TPQ+L +++GT +
Sbjct: 302 EQQNSVFSKYFERLGYKVAGISGATSENISVEQIVENNDIIVLTPQILVNCLRNGTIPSL 361
Query: 225 KYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATPG--------S 269
++ DE H + ++ Y + + S P+ +++ LTA+ G
Sbjct: 362 SVFTLMIFDECHNTSKHHPYNMIMFNYLDQKLGGSSDPLP-QVVGLTASVGIGDAKNTME 420
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHN-----RKIE--------LIEVEMGQEA 316
+ I + +L S + ++ +++ V+ RK+E I ++ +E
Sbjct: 421 AMEYICKLCASLDTSVIATVKDNLEELEEIVYKPQKFFRKVESRTTDRFKCIISQLMRET 480
Query: 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEV 376
+ I++ L + +QNR++ T + S K + Q+ +
Sbjct: 481 ESLAKNIFD-------ELENVSQIQNRNFGTQKYEQWIVSVQK-----ACMVFQLPNKDE 528
Query: 377 EAYFGALITLY--HIRR-----LLSSHG-IRPAYEMLEE-----------KLKQGSFARF 417
E+ + LY H+R+ +++ H ++ A + L++ +++Q RF
Sbjct: 529 ESRICKALFLYTSHLRKYNDALIINEHARMKDALDYLKDFFTDVRAAGFDEIEQHLTYRF 588
Query: 418 MSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRD 477
K +++ + S+ ++PKL + +L + + +P+ SR I+F R V
Sbjct: 589 EEKLQELESI------SMDLSNENPKLKDLSFILQEEYHL-NPE-SRTILFVKTRALVDA 640
Query: 478 IMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIVATSIGEE 534
+ + +L +K G+ + G + Q+ L+ FR G +++ATS+ +E
Sbjct: 641 LKKWIEENSELSFLKPGILTGRGKTNHNTGMTLPAQKCALDAFRTDGDKKILIATSVADE 700
Query: 535 GLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
G+DI + +LVI ++ + +RMIQ GR GR
Sbjct: 701 GIDIAQCNLVILYEYVGNVIRMIQTRGR-GR 730
>gi|334187796|ref|NP_001190348.1| dicer-like protein 4 [Arabidopsis thaliana]
gi|332005448|gb|AED92831.1| dicer-like protein 4 [Arabidopsis thaliana]
Length = 1688
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 123/490 (25%), Positives = 203/490 (41%), Gaps = 76/490 (15%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK---IVFAAPSRPLVM 167
R YQ + K A N +V L TG GKT IA ++IY K +F AP+ LV
Sbjct: 125 RRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSPKKSVCIFLAPTVALVE 184
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT-CLMKY 226
QQ + + V + I G+ K S W E++I + C +K
Sbjct: 185 QQAKVIADSVNF--KVAIHCGGK-RIVKSHSEW-------------EREIAANEHCFIKM 228
Query: 227 --LVCLVIDEAHRAT--GNYAYCTAIR-----ELMSVPVQLRILALTATPGSKQQTIQHI 277
+ L+ DE H A N+ Y ++ E + P RI +TA+P + + Q
Sbjct: 229 ECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQRP---RIFGMTASPVVGKGSFQSE 285
Query: 278 IDNLYISTLE-------YRNESDQDVSSYVHNRKIELIEV-----EMGQEAVEINNRIWE 325
+ I++LE Y ES+ + +V + +++ + Q + N + +
Sbjct: 286 NLSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSALSDASQSTIRYENMLED 345
Query: 326 VIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNL--PQIKFGEVEAYFGAL 383
+ + + L L+ QTL + L R NL + G A A
Sbjct: 346 IKQRCLASLKL--LIDTHQTQTLLSMKRLLKRSH------DNLIYTLLNLGLWGAIQAAK 397
Query: 384 ITLYHIRRLLSSHGIR-------PAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSIS 436
I +L S H ++ P ++ + L + A +D LL ++
Sbjct: 398 I------QLNSDHNVQDEPVGKNPKSKICDTYLSMAAEALSSGVAKDENASDLLSLAALK 451
Query: 437 HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRD---IMNALATIGDLVKATE 493
S KL +++++L F+ + H + IIF N + R I+N L + K+
Sbjct: 452 EPLFSRKLVQLIKIL-SVFRLE--PHMKCIIFVNRIVTARTLSCILNNLELLRSW-KSDF 507
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
+G SSG K S++ + +L++F++ N++VAT +GEEGLDI LVI +D +
Sbjct: 508 LVGLSSGL--KSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETV 565
Query: 554 LRMIQRMGRT 563
IQ GR
Sbjct: 566 TSFIQSRGRA 575
>gi|158705946|sp|Q0UL22.2|DCL2_PHANO RecName: Full=Dicer-like protein 2; Includes: RecName:
Full=Endoribonuclease DCL2; Includes: RecName:
Full=ATP-dependent helicase DCL2
Length = 1399
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 435 ISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT---IGDLVKA 491
+S G+ S KL +++ LV K DP+ + ++F R V I LA DL++
Sbjct: 356 MSLGSMSHKLQLLIKFLVAEAK-HDPEFT-CLVFVEQRVWVACIAEVLAIHPETRDLLRV 413
Query: 492 TEFIGQSSGKASKGQSQKV-----QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
F+G+S K + QQA LE FRAG N+I+ATS+ EEG+D+ LV+C
Sbjct: 414 GTFVGESENSKRKANIASISEPRNQQATLENFRAGKLNLILATSVLEEGIDVSSCHLVVC 473
Query: 547 FDANVSPLRMIQRMGRTGRKHDGRIPHIFKPE 578
F++ + +QR GR ++ + IF P+
Sbjct: 474 FESPKNLKSFVQRRGRARKEESKYV--IFVPQ 503
>gi|169608916|ref|XP_001797877.1| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15]
gi|160701743|gb|EAT85008.2| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15]
Length = 1017
Score = 73.9 bits (180), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 12/152 (7%)
Query: 435 ISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT---IGDLVKA 491
+S G+ S KL +++ LV K DP+ + ++F R V I LA DL++
Sbjct: 124 MSLGSMSHKLQLLIKFLVAEAK-HDPEFT-CLVFVEQRVWVACIAEVLAIHPETRDLLRV 181
Query: 492 TEFIGQSSGKASKGQSQKV-----QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
F+G+S K + QQA LE FRAG N+I+ATS+ EEG+D+ LV+C
Sbjct: 182 GTFVGESENSKRKANIASISEPRNQQATLENFRAGKLNLILATSVLEEGIDVSSCHLVVC 241
Query: 547 FDANVSPLRMIQRMGRTGRKHDGRIPHIFKPE 578
F++ + +QR GR RK + + IF P+
Sbjct: 242 FESPKNLKSFVQRRGR-ARKEESKYV-IFVPQ 271
>gi|426194802|gb|EKV44733.1| hypothetical protein AGABI2DRAFT_209093 [Agaricus bisporus var.
bisporus H97]
Length = 1524
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 120/533 (22%), Positives = 215/533 (40%), Gaps = 99/533 (18%)
Query: 107 NVPV-RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPL 165
N+P R YQ + + ++ N ++A+ TG GKT IA + I + P F AP+ L
Sbjct: 11 NIPTTRGYQQEMLEESIKHNIIIAMDTGSGKTHIAVLRIKHEVEREPSKAAWFFAPTVAL 70
Query: 166 VMQQ--IEACHNIVGIPQEWTIDMTGQISP--TKRASFWK----TKRVFFVTPQVLEKDI 217
QQ + H V + ++G + P K A W+ T RV TPQV +
Sbjct: 71 CAQQKAVIQTHLPVSVGL-----VSGALEPDQWKSAELWERVLNTHRVIVSTPQVFLDAL 125
Query: 218 QSGTC-LMKYLVCLVIDEAHRATGNYAYCTAI---RELMSVPVQLR-----------ILA 262
+ L K + LV DEAH ATG++ Y + + P LR +L
Sbjct: 126 RHAYIDLGKDISLLVFDEAHHATGDHPYARIMDFYHRIEERPANLRLYGISQVSRPYVLG 185
Query: 263 LTATP---GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEI 319
LTA+P G ++ + NL + + +++ +VH + + E +A
Sbjct: 186 LTASPIYGGDVVKSFNMLEKNL-DCIIRAPRRTRAELAQFVHRPIFQHVMYEQWPDA--- 241
Query: 320 NNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAY 379
P+++ L+ I + R Q +++ R K P + +
Sbjct: 242 ---------PFSTNLTVISNIV-RSLQIEKDPYVISLRQKLATVKPLTSEYFRLDQ---- 287
Query: 380 FGALITLYHIRRLLSSHGI----RPAYEML---------------EEKLKQGS--FARFM 418
L ++ G+ R A ++L EK ++ + F M
Sbjct: 288 --KLSITIRTQKTFVFKGLRDFERAASDILLDLGPWAADWYVWRIAEKAREAANPFNNIM 345
Query: 419 SKNEDIRKVKLL------MQQSISHGAQ------SPKLSKMLEVLVDHFKTKDPKHSRV- 465
+ +D K LL + +S+G + S KL +++E L++ K + K V
Sbjct: 346 ASWKDTEKSHLLKLLDSAVLTPVSYGEEDIMGDCSDKLQRLIETLLNE-KMETEKRDEVY 404
Query: 466 --IIFSNFRGSV---RDIMNALATIGDLVKATEFIGQSSGK-------ASKGQSQKVQQA 513
++F R +V +++N ++ + +G S S+ +++ Q+
Sbjct: 405 SGLVFVQRRDTVIALAEVLNNHPFTKNIFRIGFLLGTSDSSRRHSFLDISRKLARETQEE 464
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
+ +FR+G N+I+AT++ EEG+DI VI +D + Q GR ++
Sbjct: 465 TMAEFRSGDLNLIIATAVAEEGIDIQACGSVIRWDLPQNMASWAQSRGRARKR 517
>gi|385776498|ref|YP_005649066.1| SSL2, DNA or RNA helicase, superfamily II [Sulfolobus islandicus
REY15A]
gi|323475246|gb|ADX85852.1| SSL2, DNA or RNA helicase, superfamily II [Sulfolobus islandicus
REY15A]
Length = 469
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 107/450 (23%), Positives = 182/450 (40%), Gaps = 102/450 (22%)
Query: 127 LVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID 186
+V++PTG GKTL+ + Y F+ + IV P+R L Q V Q+ ++
Sbjct: 40 VVSMPTGSGKTLVELYIAYYLFKNVNN--IVILEPTRLLCDQMYHRFWRRV-FGQDVGME 96
Query: 187 MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCT 246
G SF + K++ TP + + S + ++DE H A G+ Y
Sbjct: 97 YEGDCK-----SFEEGKKIVVSTPFTTSECLSSADLI-------IVDEVHHAFGDIRYQE 144
Query: 247 AIRELMSVPVQLRILALTAT-PGSKQQTIQH----IIDNLYISTLEYRNESDQDVSSYVH 301
+ +L P L + TA P K+ I H I+ L T +++ S D + +
Sbjct: 145 TLVDLE--PKYL--IGFTALLPSYKKYLIDHRLIQILGELEFLTYDFKALSKIDPTFKLP 200
Query: 302 NRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFR 361
++ + E + L++ Y+ L F+
Sbjct: 201 KAIADIFDSEFSK-------------------------LEDTAYKAL-----------FK 224
Query: 362 QAPPPNLPQIKFGEVEAY-FGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK 420
+ N IKF E+ Y +G RRL+ P ++M+ E
Sbjct: 225 GSIKGNKETIKFLEITLYTYGKEAFCESYRRLIGKVEENPYFDMICE------------- 271
Query: 421 NEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMN 480
+ +SH A++ L +++ +K +D K V+IF++ + +
Sbjct: 272 -----------SKDLSHKARA------LRDVLNAYKVEDFKP--VLIFTSKKSTAYKFEK 312
Query: 481 ALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIME 540
A I DL K + +G +S+ + K+ Q+V R G +VI++T +GEEG+DI E
Sbjct: 313 A---ISDLAKGK--VKVLTGDSSRYERLKIVQSV----RKGDIDVIISTLVGEEGIDIPE 363
Query: 541 VDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
L+I D SPLR QR+GR R + +
Sbjct: 364 AKLLIMTDVPQSPLRFYQRLGRLIRGKESK 393
>gi|149054239|gb|EDM06056.1| similar to hypothetical protein FLJ11354 (predicted), isoform CRA_a
[Rattus norvegicus]
gi|149054240|gb|EDM06057.1| similar to hypothetical protein FLJ11354 (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 374
Score = 73.6 bits (179), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 10/138 (7%)
Query: 431 MQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM------NALAT 484
+ Q + G ++PKL + +L+ F + P H+R IIF+ R + ++ L T
Sbjct: 34 LAQFAAQGPENPKLEMLEGILLKQFGS--PDHTRGIIFTRTRQTASSLLLWLRQQPCLQT 91
Query: 485 IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
+ +K IG + S +QK QQ V+++FR G N++VATS+ EEGLDI + ++V
Sbjct: 92 VN--IKPQMLIGAGNTGQSTHMTQKDQQEVIQEFRDGKLNLLVATSVAEEGLDIAQCNVV 149
Query: 545 ICFDANVSPLRMIQRMGR 562
+ + + + M+Q GR
Sbjct: 150 VRYGLLTNEISMVQARGR 167
>gi|159126799|gb|EDP51915.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163]
Length = 1546
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 131/560 (23%), Positives = 226/560 (40%), Gaps = 93/560 (16%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI------------------YNFFRWF- 151
R+YQ + + A NT+ L TG GKTLIA +++ +FF F
Sbjct: 127 REYQIELFERAKTQNTIAVLDTGSGKTLIAVLLLRHTILNELDDRANGKTHRVSFFLVFV 186
Query: 152 --PDGKIVFA---APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW----KT 202
G+ + S L QQ N + G KR W +
Sbjct: 187 LLALGRCILTWCKVDSVTLAYQQAAVVRNNIDQNVAHFFGAMGTDLWDKRT--WDKHLQR 244
Query: 203 KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRE--LMSVPVQL-R 259
V T ++L + + + M + L+ DEAH A ++ Y IR+ + P Q R
Sbjct: 245 NMVIVCTAEILNQCLLNSYVRMDQINLLIFDEAHHAKKDHPYARIIRDSYFKAQPSQRPR 304
Query: 260 ILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEI 319
+ +TA+P + I + LE +S +S KI L+ E+ +E
Sbjct: 305 VFGMTASPIDTKGDITEAATYVLSRRLETFLDSRIATTS-----KITLLR-EVVSRPIE- 357
Query: 320 NNRIWEVIR---PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEV 376
++W R P+ + L + + + + L V +R A + K+
Sbjct: 358 --KVWAYNRLEPPFATELYKLMDTRYGNIKVLEGV--------YRFAWNASSELGKWCSD 407
Query: 377 EAYFGALITLY------HIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLL 430
A++ AL +I +L+ S+ ++ + + + + + A KN +L
Sbjct: 408 RAWWHALADDVLPKLEGNINKLIESNTMKAEHGAVFKDIIRIREASETVKNYFFTDPEL- 466
Query: 431 MQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL-- 488
G SPK+ ++ L HF D ++ I+F+ R + + I+N L T+ ++
Sbjct: 467 ------PGELSPKVQRLRMELSKHFN--DTTGTKCIVFTQKRYTAK-ILNELFTVLNIPN 517
Query: 489 VKATEFIGQSSGKASKGQSQKVQQAV-LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
++ IG G QQ + L KFR G N + ATS+ EEGLDI + +LVI F
Sbjct: 518 LRPGVLIGVRPGDIGGMNITFRQQFLALVKFRTGEINCLFATSVAEEGLDIPDCNLVIRF 577
Query: 548 DANVSPLRMIQRMGRT--------------GRKHDGRIPHIFKPE---VQFVELSIEQYV 590
D + ++ +Q GR +H+GR+ I + E +F E+ E +
Sbjct: 578 DLYRTLIQYVQSRGRARHCTSTYAIMVEKDNAEHEGRLKEIREAENIMRRFCEILPEDRI 637
Query: 591 SRGKKVKDDHAITTPIFKEK 610
G +DH + + + +E+
Sbjct: 638 LHG----NDHDLDSFLQEEE 653
>gi|158706522|sp|Q4WVE3.3|DCL1_ASPFU RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl1; Includes: RecName:
Full=ATP-dependent helicase dcl1
Length = 1537
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 125/547 (22%), Positives = 221/547 (40%), Gaps = 88/547 (16%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVV----IYNFFRWFPDGKI----VFAAPS 162
R+YQ + + A NT+ L TG GKTLIA ++ I N +GK F S
Sbjct: 127 REYQIELFERAKTQNTIAVLDTGSGKTLIAVLLLRHTILNELDDRANGKTHRVSFFLVDS 186
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW----KTKRVFFVTPQVLEKDIQ 218
L QQ N + G KR W + V T ++L + +
Sbjct: 187 VTLAYQQAAVLRNNIDQNVAHFFGAMGTDLWDKRT--WDKHLQRNMVIVCTAEILNQCLL 244
Query: 219 SGTCLMKYLVCLVIDEAHRATGNYAYCTAIRE--LMSVPVQL-RILALTATPGSKQQTIQ 275
+ M + L+ DEAH A ++ Y IR+ + P Q R+ +TA+P + I
Sbjct: 245 NSYVRMDQINLLIFDEAHHAKKDHPYARIIRDSYFKAQPSQRPRVFGMTASPIDTKGDI- 303
Query: 276 HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEIN-NRIWEVIR---PYT 331
E+ + +++ +R ++ + +E V ++W R P+
Sbjct: 304 --------------TEAATRLETFLDSRIATTSKITLLREVVSRPIEKVWAYNRLEPPFA 349
Query: 332 SRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRR 391
+ L + + + + L V +R A + K+ A++ AL
Sbjct: 350 TELYKLMDTRYGNIKVLEGV--------YRFAWNASSELGKWCSDRAWWHAL-------- 393
Query: 392 LLSSHGIRPAYEMLEEKLKQGSF--ARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLE 449
+ + P E KL + + A + +DI +++ + ++ P+L L
Sbjct: 394 ---ADDVLPKLEGNINKLIESNTMKAEHGAVFKDIIRIREASETVKNYFFTDPELPGELS 450
Query: 450 VLVDHFKTKDPKH------SRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGK 501
V + + KH ++ I+F+ R + + I+N L T+ ++ ++ IG G
Sbjct: 451 PKVQRLRMELSKHFNDTTGTKCIVFTQKRYTAK-ILNELFTVLNIPNLRPGVLIGVRPGD 509
Query: 502 ASKGQSQKVQQAV-LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
QQ + L KFR G N + ATS+ EEGLDI + +LVI FD + ++ +Q
Sbjct: 510 IGGMNITFRQQFLALVKFRTGEINCLFATSVAEEGLDIPDCNLVIRFDLYRTLIQYVQSR 569
Query: 561 GRT--------------GRKHDGRIPHIFKPE---VQFVELSIEQYVSRGKKVKDDHAIT 603
GR +H+GR+ I + E +F E+ E + G +DH +
Sbjct: 570 GRARHCTSTYAIMVEKDNAEHEGRLKEIREAENIMRRFCEILPEDRILHG----NDHDLD 625
Query: 604 TPIFKEK 610
+ + +E+
Sbjct: 626 SFLQEEE 632
>gi|441677777|ref|XP_004092765.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DHX58 [Nomascus leucogenys]
Length = 609
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F++ D R IIF+ R S ++ L L ++A
Sbjct: 274 THGPENPKLEVLEKILQRQFRSSDS--PRGIIFTRTRQSTHSLLLWLQQQPGLKTLDIRA 331
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V+ KFR G N++VATS+ EEGLDI ++V+ +
Sbjct: 332 QLLIGAGNSSQSTHMTQRDQQEVIWKFRNGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 391
Query: 552 SPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 392 NEISMVQARGR 402
Score = 44.7 bits (104), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQKEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + WT+ ++G + P RA F R + T ++L+ + S
Sbjct: 63 HGEEFRRM--LDGRWTMTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS 269
+ +V+DE H + Y + + + + Q ++L LTA+PG+
Sbjct: 119 HVELTAFSLIVVDECHHTHKDTVYNVIMSQYLELKFQRAQPLPQVLGLTASPGT 172
>gi|146324173|ref|XP_753471.2| RNA helicase/RNAse III [Aspergillus fumigatus Af293]
gi|129558032|gb|EAL91433.2| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293]
Length = 1546
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 131/560 (23%), Positives = 226/560 (40%), Gaps = 93/560 (16%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI------------------YNFFRWF- 151
R+YQ + + A NT+ L TG GKTLIA +++ +FF F
Sbjct: 127 REYQIELFERAKTQNTIAVLDTGSGKTLIAVLLLRHTILNELDDRANGKTHRVSFFLVFV 186
Query: 152 --PDGKIVFA---APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW----KT 202
G+ + S L QQ N + G KR W +
Sbjct: 187 LLALGRCILTWCKVDSVTLAYQQAAVLRNNIDQNVAHFFGAMGTDLWDKRT--WDKHLQR 244
Query: 203 KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRE--LMSVPVQL-R 259
V T ++L + + + M + L+ DEAH A ++ Y IR+ + P Q R
Sbjct: 245 NMVIVCTAEILNQCLLNSYVRMDQINLLIFDEAHHAKKDHPYARIIRDSYFKAQPSQRPR 304
Query: 260 ILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEI 319
+ +TA+P + I + LE +S +S KI L+ E+ +E
Sbjct: 305 VFGMTASPIDTKGDITEAATYVLSRRLETFLDSRIATTS-----KITLLR-EVVSRPIE- 357
Query: 320 NNRIWEVIR---PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEV 376
++W R P+ + L + + + + L V +R A + K+
Sbjct: 358 --KVWAYNRLEPPFATELYKLMDTRYGNIKVLEGV--------YRFAWNASSELGKWCSD 407
Query: 377 EAYFGALITLY------HIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLL 430
A++ AL +I +L+ S+ ++ + + + + + A KN +L
Sbjct: 408 RAWWHALADDVLPKLEGNINKLIESNTMKAEHGAVFKDIIRIREASETVKNYFFTDPEL- 466
Query: 431 MQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL-- 488
G SPK+ ++ L HF D ++ I+F+ R + + I+N L T+ ++
Sbjct: 467 ------PGELSPKVQRLRMELSKHFN--DTTGTKCIVFTQKRYTAK-ILNELFTVLNIPN 517
Query: 489 VKATEFIGQSSGKASKGQSQKVQQAV-LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
++ IG G QQ + L KFR G N + ATS+ EEGLDI + +LVI F
Sbjct: 518 LRPGVLIGVRPGDIGGMNITFRQQFLALVKFRTGEINCLFATSVAEEGLDIPDCNLVIRF 577
Query: 548 DANVSPLRMIQRMGRT--------------GRKHDGRIPHIFKPE---VQFVELSIEQYV 590
D + ++ +Q GR +H+GR+ I + E +F E+ E +
Sbjct: 578 DLYRTLIQYVQSRGRARHCTSTYAIMVEKDNAEHEGRLKEIREAENIMRRFCEILPEDRI 637
Query: 591 SRGKKVKDDHAITTPIFKEK 610
G +DH + + + +E+
Sbjct: 638 LHG----NDHDLDSFLQEEE 653
>gi|336468520|gb|EGO56683.1| hypothetical protein NEUTE1DRAFT_123167 [Neurospora tetrasperma
FGSC 2508]
Length = 1529
Score = 73.2 bits (178), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 118/490 (24%), Positives = 196/490 (40%), Gaps = 78/490 (15%)
Query: 105 PVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164
P + R YQ + + +L N +VA +I F P+
Sbjct: 71 PAALTARAYQLEMFEASLKQNIIVA-------------------------RIWFLTPTVA 105
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQ--ISPTKRASFWKTK----RVFFVTPQVLEKDIQ 218
L QQ + + IP I + GQ + + W R+ T Q+L
Sbjct: 106 LARQQHQVLQS--QIPSVKAIMLCGQDGVDSWSEQAVWDAVLLNVRIVVSTYQILFDANA 163
Query: 219 SGTCLMKYLVCLVIDEAHRATGNY--------AYCTAIRELMSVPVQLRILALTATPGSK 270
+ L +VIDEAH +G++ AY A + + VP IL LTA+P
Sbjct: 164 HSFVRLDSLSLIVIDEAHNCSGSHPIARLMTEAYLPAKKAGLPVP---SILGLTASPLKS 220
Query: 271 Q-----QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMG-QEAVEINNRIW 324
+ ++ ++D + + +R E H + E++ V G +
Sbjct: 221 NNLADIEKLEQVLDAVCRTPTIHREEL------LAHVNRPEMLVVSYGDSKGPGTEPTPT 274
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQ--APPPNLPQIKFGEVEAYFGA 382
+++ + + + ++ D L +R+K RQ L Q + V Y A
Sbjct: 275 DLMTRFLEAYHRLDISKDPDVLLLKAQRTERAREKLRQMVTKKDTLAQKELRGV--YNRA 332
Query: 383 LITLYHIRRLLSSHGI-RPAYEMLEEKLKQGSFARFMSKNEDIRKVKL--LMQQSISHGA 439
L+ I + + + R ML E + A+ E +R + + + ++ I
Sbjct: 333 LLVRREIGPWAADYYLTRTVSHMLAELERGEPPAQHRYIGEALRSIPIPAISKEPIQ--- 389
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT---IGDLVKATEFIG 496
SPK+ +L+VL H +DP I+F R V + + ++T D + IG
Sbjct: 390 LSPKVQTLLKVLASH--QQDPVG---IVFVKERVMVSIVTHIISTHPLTKDRYRTASMIG 444
Query: 497 QSS--GKASK--GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
+S GKA ++K LE FR G +N++VATS+ EEG+D+ +LVICFD +
Sbjct: 445 TASVPGKARNHMDMTKKEDMTSLEGFRRGRFNLLVATSVLEEGIDVPICNLVICFDEPSN 504
Query: 553 PLRMIQRMGR 562
IQR GR
Sbjct: 505 IKSFIQRRGR 514
>gi|312284067|ref|NP_001186061.1| probable ATP-dependent RNA helicase DHX58 [Sus scrofa]
gi|229473596|gb|ACQ73327.1| LGP2 [Sus scrofa]
Length = 681
Score = 73.2 bits (178), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 9/132 (6%)
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKATE 493
G ++PKL + E+L FK PK R IIF+ R S ++ L L ++A
Sbjct: 345 GPENPKLEVLKEILQKQFK--GPKSPRGIIFTRTRQSAHSLLLWLQQQPSLQTVDIRAQL 402
Query: 494 FIGQSSGKASK---GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
IG + S +Q+ QQ V++KFR G N++VATS+ EEGLDI + ++V+ +
Sbjct: 403 LIGAGNSSQSTPMTQMTQRDQQEVIQKFRTGALNLLVATSVAEEGLDIPQCNVVVRYGLL 462
Query: 551 VSPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 463 TNEISMVQARGR 474
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 19/187 (10%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGRNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGTCL- 223
E + + + W I ++G + P RA F R + T ++L+K + S
Sbjct: 63 HCEEFSRM--LDRRWAITTLSGDMGP--RAGFGHLARSHDLLICTAELLQKALTSEEEEE 118
Query: 224 ---MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS-KQQTI 274
+ LV+DE H + Y + + + Q ++L LTA+PG+ + T+
Sbjct: 119 HVELNVFSLLVVDECHHTHKDTVYNIILSQYLKHKFQRTKPLPQVLGLTASPGTGRASTL 178
Query: 275 QHIIDNL 281
ID++
Sbjct: 179 DGAIDHI 185
>gi|154147577|ref|NP_001093664.1| interferon-induced helicase C domain-containing protein 1 [Sus
scrofa]
gi|152148442|gb|ABS29718.1| melanoma differentiation associated protein-5 [Sus scrofa]
Length = 1023
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 9/145 (6%)
Query: 424 IRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL- 482
+R K+L + + + ++ KL+K+ +++HF T+ + +R IIF+ R S + +
Sbjct: 678 LRNKKILKKLAENPEYENEKLTKLRNTIMEHF-TRTEESARGIIFTKTRQSAYALSQWIT 736
Query: 483 -----ATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLD 537
A +G VKA IG K +Q Q+ V+ KFR G N+++AT++ EEGLD
Sbjct: 737 DNKKFAEVG--VKAHHLIGAGHSSEFKPMTQNEQREVISKFRTGKINLLIATTVAEEGLD 794
Query: 538 IMEVDLVICFDANVSPLRMIQRMGR 562
I E ++VI + + + M+Q GR
Sbjct: 795 IKECNIVIRYGLVTNEIAMVQARGR 819
>gi|198428257|ref|XP_002120168.1| PREDICTED: similar to Ddx58 protein [Ciona intestinalis]
Length = 926
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 115/244 (47%), Gaps = 23/244 (9%)
Query: 108 VPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLV 166
+ +R+YQ + + AL +N+L+ PTG GKTL+A + R P+ KIVF P LV
Sbjct: 259 LKLRNYQLELAEQALQGNNSLIVAPTGTGKTLVAQHICTEHLRRNPNSKIVFLVPRVVLV 318
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-KTKRVFFVTPQVLEKDIQSGTCLMK 225
QQ +A + + Q ++ + + +F ++ F+TPQ+L ++ +
Sbjct: 319 EQQHDAFDSQMKYEQGMLCKISSENTTNAAPNFLIMGHKITFMTPQILFNYLEKDCDFIN 378
Query: 226 YLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-------RILALTATPG-----SKQQT 273
L L+ DE H A Y + ++ + +++ +TA+PG S Q
Sbjct: 379 ELGLLIYDECHHAMKGDPYNSIMKVYHDNLTKYNGAKPLPQVIGMTASPGVGGAKSVQAA 438
Query: 274 IQHI---IDNLYIST-----LEYRNESDQDVS-SYVHNRKIELIEVEMGQEAVEINNRIW 324
QHI + NL ++T +E + E + + + R+I+ + + + V + N+IW
Sbjct: 439 TQHIKRLLANLNVTTAPVEVIENKKELGKHTTETTCEIRRIDRKKTQFQENMVTLINKIW 498
Query: 325 EVIR 328
E ++
Sbjct: 499 ENLK 502
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG 500
SP L K+ E+L F D S+ IIF R + ++ L +K + G +
Sbjct: 611 SPILRKLFEILTAEFV--DFPESKCIIFVRTRCIAKALVTCLMEDFYDLKPKQLTGVGAS 668
Query: 501 KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
G ++ Q+ + FR G +IVATS+ EEG DI +LVI ++ + + + +QR
Sbjct: 669 AGDGGMTRVEQEDTISSFRDGSTKIIVATSVAEEGFDIPACNLVIAYNYSTNEIGHVQRQ 728
Query: 561 GRTGRKHDGRI 571
GR GR + ++
Sbjct: 729 GR-GRAKESKM 738
>gi|405963457|gb|EKC29027.1| Putative ATP-dependent RNA helicase DDX58 [Crassostrea gigas]
Length = 459
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 9/171 (5%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R+YQ + + A+ NT+V TG GKT +A +I + + P+GK+V AP+ PLV Q
Sbjct: 94 LRNYQEELAENAIQGENTIVCSGTGTGKTRVAFAIIDDHIKKHPEGKVVVMAPTVPLVNQ 153
Query: 169 QIEACHNIVGIPQEWTIDMTGQISPTKRAS-FWKTKRVFFVTPQVLEKDI--QSGTCLMK 225
+++ E T+ +TG+ +++ F +VF +TP +LE I + ++
Sbjct: 154 HYMVLRHLLPHLVEKTLKITGESERSEQLHMFVGEYQVFLLTPAILENAIHPEKDELILS 213
Query: 226 YLVCLVIDEAHRATGNYAYCTAIRE--LMSVPVQLR---ILALTATPGSKQ 271
++ DE H A + Y + + LM + + I+ LTAT G+ +
Sbjct: 214 KFSLMIFDECHHACKGHTYKQIMLKYHLMKSDGKTKLPQIVGLTATLGTNK 264
>gi|291236967|ref|XP_002738409.1| PREDICTED: Dicer Related Helicase family member (drh-1)-like
[Saccoglossus kowalevskii]
Length = 877
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQ 497
++PKL ++ L + TK+ SR IIF+ R S + +++ + DL +K G
Sbjct: 542 ENPKLKRLQSQLEKEYSTKEG--SRGIIFTKTRESTKALVSWIKNTPDLNFLKVDRLTGT 599
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
SK +QK QQ ++ KF G N +VAT++ EEGLDI E ++VI ++ + + M+
Sbjct: 600 GPNSTSKSMTQKDQQDIILKFHKGDLNCLVATTVAEEGLDIPECNVVIRYNLVTNEIAMV 659
Query: 558 QRMGRTGRK 566
Q GR K
Sbjct: 660 QARGRARAK 668
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 16/187 (8%)
Query: 108 VPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLV 166
+ +R YQ + K ++F N +V+ PTG GKT IAA + N + + K++ PLV
Sbjct: 185 IELRPYQAELVKPSIFGHNVIVSAPTGSGKTRIAAFITLNHLKQRENAKVLLLVNKVPLV 244
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG----TC 222
Q + ++ + + + + V +T Q+LE + +G
Sbjct: 245 EQHYKKEFKLLTSKYKVSKICGESAARVSLKHLVEKNDVVILTAQILENALNNGEDNEKL 304
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR------ILALTATPG-----SKQ 271
+ L+ DE H Y + E + + ++ + IL LTA+ G ++
Sbjct: 305 ELTDFSLLIFDECHHTQKGEVYNNIMHEYLKLKIEEKVYQLPQILGLTASLGVGGARTEY 364
Query: 272 QTIQHII 278
+ + HI+
Sbjct: 365 KAVTHIL 371
>gi|441494712|gb|AGC51036.1| melanoma-differentiation-associated 5 [Anser anser]
Length = 1004
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 125/282 (44%), Gaps = 50/282 (17%)
Query: 440 QSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSV----RDIMN--ALATIGDLVKAT 492
++ KL K+ L++ F KTK+P R IIF+ R S + IM+ +G +KA
Sbjct: 675 ENEKLIKLRNTLMEEFTKTKEP---RGIIFTKTRQSAFALFQWIMDNPKFEEVG--IKAH 729
Query: 493 EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
IG +K +Q Q+ V++KFR G ++++AT++ EEGLDI E ++VI + +
Sbjct: 730 YLIGAGHNSETKPMTQNEQREVIDKFRGGSVDLLIATTVAEEGLDIKECNIVIRYGLVTN 789
Query: 553 PLRMIQRMGR----------TGRKHDGRIP----HIFKPEVQFVELSIEQYVSRGKKVKD 598
+ M+Q GR G + +IF+ ++ + + Q + + + +
Sbjct: 790 EIAMLQARGRARADESTYALVASSGSGAVEREDVNIFREKMMYKAIQRVQRMPQEEYLNK 849
Query: 599 DHAITTPIFKEKLTAAETDLIAKYFHPTSDSTWRPSLIAFPHFQALPSRVHKVMHSFRTG 658
+ EK A+ D Y PSLI F L HK++ S
Sbjct: 850 IESFQLQSIMEKQMKAKRDQRKTY-------KKNPSLITF-----LCKNCHKLICSGEDI 897
Query: 659 MLIDMMQHL------QGLTFSRDDRTFVEDEVSSDKHLGLQT 694
+I+ M H+ Q L +R+++T DKH QT
Sbjct: 898 QVIENMHHVSVKKDFQHLYHTRENKTL------QDKHADYQT 933
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 74/187 (39%), Gaps = 30/187 (16%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPSRP 164
+RDYQ + K AL N ++ LPTG GKT +A + + R GK++ P
Sbjct: 303 LRDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKKRASEPGKVIVLVNKVP 362
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT 221
LV Q + N I ++G + SF + R V T Q+LE + + T
Sbjct: 363 LVEQHLRKEFNPFLKRWYQVIGLSG--DSQLKISFPEVVRRYDVIISTAQILENSLLNAT 420
Query: 222 ------CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR--------------IL 261
+ ++IDE H Y +R + ++ R IL
Sbjct: 421 EEDEEGVHLSDFSLIIIDECHHTQKEGVYNNIMRRYVKEKMKNRKLAKENKPLIPQPQIL 480
Query: 262 ALTATPG 268
LTA+PG
Sbjct: 481 GLTASPG 487
>gi|327272183|ref|XP_003220865.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like [Anolis
carolinensis]
Length = 680
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 10/130 (7%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMN------ALATIGDLVKATE 493
++PKL K+ +VL D F+ + K SR I+F+ R S + AL +G +KA
Sbjct: 348 ENPKLEKLQQVLQDQFQ--ELKSSRGIVFTRTRQSAHSLHQWLQDNRALCELG--IKAAV 403
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
G K +Q+ QQ V++ FR G N++ +TS+ EEGLD+ E ++V+ + +
Sbjct: 404 LTGAGYSNQIKHMTQQEQQNVIQNFRKGALNLLFSTSVAEEGLDVPECNIVVRYGLMTNE 463
Query: 554 LRMIQRMGRT 563
+ M+Q GR
Sbjct: 464 IAMMQARGRA 473
>gi|296202918|ref|XP_002748670.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 2
[Callithrix jacchus]
Length = 661
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 6/132 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F++ D R IIF+ R S ++ L L ++
Sbjct: 326 THGLENPKLEMLEKILQKQFRSSDS--PRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIRP 383
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + +QK QQ V+ KFR G N++VATS+ EEGLDI + ++V+ +
Sbjct: 384 QLLIGSGNSSQRTHMTQKDQQEVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVVRYGLLT 443
Query: 552 SPLRMIQRMGRT 563
+ + M+Q GR
Sbjct: 444 NEISMVQARGRA 455
>gi|330944921|ref|XP_003306459.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1]
gi|311316023|gb|EFQ85435.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1]
Length = 1448
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 120/491 (24%), Positives = 211/491 (42%), Gaps = 72/491 (14%)
Query: 110 VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF----PDGKIV-FAAPSRP 164
+R YQ + + ++ +N +V + TG GKT IA P KIV F AP+
Sbjct: 62 LRAYQAEMVEESMRANIIVVMDTGSGKTQIAIERTRAELETCQPDKPTRKIVWFLAPTVS 121
Query: 165 LVMQQIEA-CHNIVGIPQEWTI---DMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
L QQ E N+ G + D+ + + S R+ T QVL + + G
Sbjct: 122 LCEQQHEVFMSNLPGFGHQILCGRDDIEFWTTQRQWDSILTNVRIVVSTHQVLFEALTHG 181
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELM---------SVPVQLRILALTATPGSK- 270
+ L L+ DEAH T N+ + + S+P ++L LTA+P K
Sbjct: 182 FVTLTKLALLIFDEAHHCTLNHPANQLMTKFYMPQLHCNSTSLP---KVLGLTASPVMKA 238
Query: 271 ---QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM-----GQEAVEINNR 322
+Q ++ I NLY +T + ++ YVH + EL+++ G ++
Sbjct: 239 VATRQGLELIEQNLY-ATAKTPKLHRSELMRYVH--QPELVQIAYPSAPPGTHHSQLLLA 295
Query: 323 IWEVIRPYTSRLS--AIGLL--QNRDYQTLSPVD-LLNSRDKFRQAPPPNLPQIKFGEVE 377
+ + + Y + I LL ++ Y +D L +SR + L Q+K + E
Sbjct: 296 LQDAYQTYDLQKDPYLIALLDQHSKGYDVSRQLDRLWSSRKTYCY---DQLKQLK-NKAE 351
Query: 378 AY---FGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQS 434
A G + +++R+ +++ +E + Q +S NE + +
Sbjct: 352 AMADELGTSVMEFYLRQCIAT------FENMTGIFDQQLLD--LSTNERQHLLNVFKSLP 403
Query: 435 ISHGAQSP-----KLSKMLEVLVDHFKTK---DPKHSRVIIFSN--FRGSVRDIMNALAT 484
+++ P LS+ + +LVD + +P + ++ + S+ +I+
Sbjct: 404 LNNPTSVPDGILDNLSQKVNILVDTLVAEVEGNPDFTGLVFVEQRVWVASLAEILTCHPR 463
Query: 485 IGDLVKATEFIGQSSGKASKGQSQ-------KVQQAVLEKFRAGGYNVIVATSIGEEGLD 537
L++ F+G S K+SK +S K QQ L+ FRAG N+++ATS+ EEG+D
Sbjct: 464 TKHLLRVGTFVGTS--KSSKRKSNISVFAEPKNQQTTLDDFRAGIINLVLATSVLEEGID 521
Query: 538 IMEVDLVICFD 548
+ LVICF+
Sbjct: 522 VSSCHLVICFE 532
>gi|444714076|gb|ELW54964.1| putative ATP-dependent RNA helicase DHX58 [Tupaia chinensis]
Length = 680
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Query: 438 GAQSPKLSKMLEVLVDHFKTKD-PKHSRVIIFSNFRGSVRDIMNALA---TIGDLVKATE 493
G ++PKL + ++L + F + + P R IIF+ R S ++ L ++ V+A
Sbjct: 345 GPENPKLEMLEQILRNQFGSPNSPSSPRGIIFTRTRLSTHSLLLWLQEQPSLQAAVRAQV 404
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
G S + +Q+ QQ V+ KFR G N++VATS+ EEGLDI + ++V+ + +
Sbjct: 405 LTGAGSSSQNTHMTQRDQQEVIRKFRVGTLNLLVATSVAEEGLDIPQCNVVVRYGLLTNE 464
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 465 ISMVQARGR 473
Score = 44.7 bits (104), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 23/188 (12%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDRAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E + + WT+ ++G + P RA F R + T ++L+ + S
Sbjct: 63 HAEEFGRM--LDGRWTMATLSGDMGP--RAGFGYLARQNDLLICTAKLLQMALTSPEEDE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSKQQT-- 273
+ +V+DE H + Y + + + ++ ++L LTA+PG+ + T
Sbjct: 119 HVELTAFSLIVVDECHHTHKDTTYNIILSQYLEHKLRRTRPLPQVLGLTASPGTGRATKL 178
Query: 274 ---IQHII 278
+ HI+
Sbjct: 179 DGAVDHIL 186
>gi|390463706|ref|XP_003733083.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 [Callithrix
jacchus]
Length = 578
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F++ D R IIF+ R S ++ L L ++
Sbjct: 336 THGLENPKLEMLEKILQKQFRSSDS--PRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIRP 393
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + +QK QQ V+ KFR G N++VATS+ EEGLDI + ++V+ +
Sbjct: 394 QLLIGSGNSSQRTHMTQKDQQEVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVVRYGLLT 453
Query: 552 SPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 454 NEISMVQARGR 464
>gi|302318908|ref|NP_001180543.1| dicer-2 [Bombyx mori]
gi|300669733|dbj|BAJ11655.1| DICER-2 [Bombyx mori]
Length = 1677
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 129/521 (24%), Positives = 213/521 (40%), Gaps = 95/521 (18%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR-----WFPDGK-IVFAAPSRP 164
R YQ + + A NT++ LPTG GKT IA +I F W GK F + P
Sbjct: 15 RPYQAILEEIASSKNTIIHLPTGSGKTFIAQRLIKKFRNQLKKPWGEGGKRSFFLVNTVP 74
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT---------KRVFFVTPQVLEK 215
LV QQ N+ I +D G S +WK +V +T Q+L
Sbjct: 75 LVNQQ----KNV--IEMMCPVDGVGAYSSEDGVDYWKKADWDSELARNQVIVMTSQILSD 128
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV--QLRILALTATPGSKQQT 273
+ ++ + ++ DE H A ++ ++ ++ Q R+L LTAT + +
Sbjct: 129 MLTHAYIRIEDINLIIFDECHHAVEDHPMRVIMKHFLNCKAHEQPRVLGLTATLLNGNVS 188
Query: 274 IQHI------IDNLYISTLEYRNESDQDVSSYVHNRKIELIEV----EMGQEAVEINNRI 323
I I ++N + +T+ ++ + V +Y N + E I+ +M + A E
Sbjct: 189 ISKIEETLKQLENTFHATIATVDDLGE-VMTYSTNPQ-EFIQYFRKPQMSEAAKE----- 241
Query: 324 WEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPP----PNLPQIKFGEVEAY 379
+S + LQN PV L S+D F++ P N P V+
Sbjct: 242 ---------AISLLNTLQNLVMSVKLPVSL-PSKD-FKKTPCQRDISNDPNKIVKAVKNL 290
Query: 380 FGALIT-LYHIRRLLSSHGIRPAYEMLEEKLKQGS--------FARFMSKNEDIRKVKL- 429
+IT L + S GI AY +L E+LK+ + ++ ++ + + R + L
Sbjct: 291 IVGMITNLEEMGLYGGSLGIL-AYIVLLERLKRKASTKEENLLYSTVITHSTEARMILLD 349
Query: 430 LMQQSISHGAQSPKLSKMLEVLVDHFKTKDP------------KHSRV----IIFSNFRG 473
M+ + S+ + L+D K +P HSR IIF+ R
Sbjct: 350 AMENETGYDKIIKHSSEKILQLIDLLKEYNPLILEKPGELLKVNHSRKPLCGIIFTKQRF 409
Query: 474 SVRDIMNALATIG-------DLVKATEFIGQS-----SGKASKGQSQKVQQAVLEKFRAG 521
+ + + N L + + +K +G S S + + Q+A+L F G
Sbjct: 410 TSKILYNILMDLKKARPDEFEFLKHDFVVGFSINPFKSTREEHYLKKSSQKAIL-GFNNG 468
Query: 522 GYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
N +++TS+ EEGLDI + LV+ +DA IQ GR
Sbjct: 469 DLNCLISTSVIEEGLDIPQCALVVRYDAPTEYRSYIQSKGR 509
>gi|414871006|tpg|DAA49563.1| TPA: hypothetical protein ZEAMMB73_299457, partial [Zea mays]
Length = 1517
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 36/183 (19%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK-----IVFAAPSRPL 165
R YQ + AL NT+ L TG GKT++A ++ G+ +VF AP+ L
Sbjct: 34 RGYQVEVFAAALRGNTIAVLDTGSGKTMVAIMLAREHVLRARAGEALRRIVVFLAPTVHL 93
Query: 166 VMQQIEA-----------CHNIVGIPQEWTIDMTGQISPTKRASFWK----TKRVFFVTP 210
V QQ E CH G+ W A WK TK + +TP
Sbjct: 94 VHQQFEVIREYTDLDAVECHGASGVGH-WN------------AKRWKEAIGTKEIVVMTP 140
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR--ILALTATPG 268
Q+L ++ M+ + L+ DE HRA GN+ Y ++E + + R I +TA+P
Sbjct: 141 QILLDALRHAFLTMRVMSLLIFDECHRACGNHPYSLIMKEFY-IDSEWRPAIFGMTASPV 199
Query: 269 SKQ 271
SK+
Sbjct: 200 SKK 202
Score = 41.2 bits (95), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 498 SSGKASK-GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
+ G SK S VQ+ L+ FRAG N++ T + EEG+D+ VI FD +
Sbjct: 388 TGGSTSKDALSPAVQRFTLDLFRAGKVNLLFTTDVTEEGIDVPNCSCVIRFDLPRTVCSY 447
Query: 557 IQRMGR 562
+Q GR
Sbjct: 448 VQSRGR 453
>gi|414871005|tpg|DAA49562.1| TPA: hypothetical protein ZEAMMB73_299457 [Zea mays]
Length = 1440
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 36/183 (19%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK-----IVFAAPSRPL 165
R YQ + AL NT+ L TG GKT++A ++ G+ +VF AP+ L
Sbjct: 34 RGYQVEVFAAALRGNTIAVLDTGSGKTMVAIMLAREHVLRARAGEALRRIVVFLAPTVHL 93
Query: 166 VMQQIEA-----------CHNIVGIPQEWTIDMTGQISPTKRASFWK----TKRVFFVTP 210
V QQ E CH G+ W A WK TK + +TP
Sbjct: 94 VHQQFEVIREYTDLDAVECHGASGVGH-WN------------AKRWKEAIGTKEIVVMTP 140
Query: 211 QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR--ILALTATPG 268
Q+L ++ M+ + L+ DE HRA GN+ Y ++E + + R I +TA+P
Sbjct: 141 QILLDALRHAFLTMRVMSLLIFDECHRACGNHPYSLIMKEFY-IDSEWRPAIFGMTASPV 199
Query: 269 SKQ 271
SK+
Sbjct: 200 SKK 202
Score = 41.2 bits (95), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 498 SSGKASK-GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
+ G SK S VQ+ L+ FRAG N++ T + EEG+D+ VI FD +
Sbjct: 388 TGGSTSKDALSPAVQRFTLDLFRAGKVNLLFTTDVTEEGIDVPNCSCVIRFDLPRTVCSY 447
Query: 557 IQRMGR 562
+Q GR
Sbjct: 448 VQSRGR 453
>gi|336380656|gb|EGO21809.1| hypothetical protein SERLADRAFT_441040 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1460
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 113/510 (22%), Positives = 202/510 (39%), Gaps = 83/510 (16%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF------PDGKIVFAAPSRP 164
R YQ I + A SN + AL TG GKT I+ ++I +W IVF P
Sbjct: 18 RRYQEEIFRRAQNSNVIAALDTGSGKTFISILLI----KWIVLQEKAKRKVIVFLVPKVA 73
Query: 165 LVMQQIE--ACHNIVGIPQ-EWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
LV QQ + A H + + ++D+ + SF ++ + Q+ +
Sbjct: 74 LVKQQADSIAAHTPLRVKMFHGSLDLDLTDRANWKKSFEQSD-LTVAAAQIFLNILTHSH 132
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRE-LMSVPV-QLRILALTATP--------GSKQ 271
++ + L+ DE H N+AY + E ++P + ++ +TA+P GS
Sbjct: 133 WSVEKVSLLIFDECHHTRKNHAYNGIMHEYFQTIPSDRPKVFGMTASPIWNPKDAEGS-L 191
Query: 272 QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIE-------------------VEM 312
T++ +D I+ E+ E ++ R +E+I+ + +
Sbjct: 192 ATLEKNLDATVIAVREHVEELQENSP-----RPVEVIKEFSPPSDTYDYLYPTLWDCLSL 246
Query: 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK 372
AVEIN + ++ Y +++G DL D + + +++
Sbjct: 247 FTNAVEINIPVDKLHMKYQMTRNSLGAFS---------ADLFLYTD-IKTRLIHFIDELE 296
Query: 373 FGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQ-----GSFARFMSKNEDIRKV 427
+ E + G +HI SS + + + L+Q F F ++ V
Sbjct: 297 SSQNETFLGLDGFDHHIDVDESSESAQSQFPAISPDLEQIDAILSEFRPFFDSGTEVPAV 356
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD 487
+ + +PK++ ++EVL++H+ I+F R + L I +
Sbjct: 357 PI----PVPLAWCTPKVNALVEVLLEHYSPT----FHAIVFVEQRQVAACLAKILPCIPE 408
Query: 488 L---VKATEFIGQSSGKA--------SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGL 536
L V+ E +G + ++G QQ +E FR G N++VATS+ EEGL
Sbjct: 409 LRGYVRCAELVGHGANHGHGPVVNSNARGMGLARQQDTVELFRQGKLNLLVATSVAEEGL 468
Query: 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
D+V+ FD + +Q GR K
Sbjct: 469 HFPACDIVVRFDPIQHMVGYVQSRGRARTK 498
>gi|359475987|ref|XP_002280293.2| PREDICTED: endoribonuclease Dicer homolog 3a-like [Vitis vinifera]
Length = 1648
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 11/166 (6%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGK---IVFAAPSRPLV 166
R YQ+ + + A NT+ L TG GKT+IA ++I + DG+ I+F AP+ LV
Sbjct: 47 RSYQWKVFEVAKRRNTIAVLDTGTGKTMIALMLIREIGQAVKADGRKLFIIFLAPTVHLV 106
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQSGTC 222
QQ + + G E G + ++ W+ + V +TPQ+L ++
Sbjct: 107 NQQFKVIKDSTGFEVEEYYGAKGVDEWSAKS--WEKEISEHDVLVMTPQILLDALRKAFL 164
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV-QLRILALTATP 267
++ + +++DE HRATGN+ Y ++E V + +I +TA+P
Sbjct: 165 SLETVCLMIVDECHRATGNHPYTKIMKEFYHKSVDKPKIFGMTASP 210
>gi|307638596|gb|ACY78116.2| RNA helicase LGP2 [Ctenopharyngodon idella]
Length = 680
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 111/488 (22%), Positives = 205/488 (42%), Gaps = 47/488 (9%)
Query: 106 VNVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164
+ + +R YQ + + AL N+++ LPTG GKT A V + K+
Sbjct: 1 MEITLRSYQEEVVQAALKGENSIIWLPTGGGKTRAAVYVAKKHLETTRNAKVAVLVNKVH 60
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKR--ASFWKTKRVFFVTPQVLEKDIQSGT- 221
LV Q N + + + + S K K + T Q+LE + S
Sbjct: 61 LVDQHFNNEFNPY-LGKAYRVKAISGDSSDKDLFGRLVKDSDLIICTAQILENALNSSEE 119
Query: 222 ---CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSK--- 270
+ L+IDE H Y + + V+ ++L LTA+PG+
Sbjct: 120 EKHVELTDFSLLIIDECHHTQKESVYNKIMGRYVEKKVRKERKLPQVLGLTASPGTGGNK 179
Query: 271 --QQTIQHII------DNLYISTLEYRNESDQDVSSYVHNRKIELIEVE----MGQEAVE 318
+ ++H++ D++ +ST Y ++ + V ++ +++E G
Sbjct: 180 TLAKAVEHVLQICANLDSVIVSTKNYASKLKEVVPR--PRKQYDIVEKRALDPFGDHLKL 237
Query: 319 INNRIWEVIRPYTSR-LSAIGLLQNRDYQT-LSPVDLLNSRDKFRQAPPPNLPQIKFGEV 376
+ + I E + SR L +G +DY+ + ++ +++ R L +
Sbjct: 238 MMSLIHEFMPSTVSRSLREVG---TQDYEADVVELEKTGVKEENRLITQCAL------HL 288
Query: 377 EAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSIS 436
Y AL+ +R + + + + Y KL G+ F+ D +V+L Q ++
Sbjct: 289 RQYNDALLIHDTVRMVDAFNVLDEFYNSRSNKLLDGT-DFFLQGLFDENRVEL-KQLALD 346
Query: 437 HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEF 494
++PKL+++ L+ FK + K SR IIFS R + + + +L VK +
Sbjct: 347 ARYENPKLAQLQRTLLKEFK--ENKMSRGIIFSKTRRGTHCLYDWVNANHELQKVKISAG 404
Query: 495 IGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
I +G +Q Q+ ++ FR G N++++TS+ EEGLDI E +LV+ + + +
Sbjct: 405 ILTGTGTGVNHMNQNKQKNTIKDFRLGHLNLLISTSVAEEGLDIAECNLVVRYGLLTNEI 464
Query: 555 RMIQRMGR 562
Q GR
Sbjct: 465 AQQQASGR 472
>gi|284161462|ref|YP_003400085.1| type III restriction protein res subunit [Archaeoglobus profundus
DSM 5631]
gi|284011459|gb|ADB57412.1| type III restriction protein res subunit [Archaeoglobus profundus
DSM 5631]
Length = 554
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 21/218 (9%)
Query: 108 VPVRDYQFAITKTALFS--NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPL 165
+ +RDYQ + AL + +TLV LPTG GKT+I A + F K + P+R L
Sbjct: 2 IELRDYQKEAIEHALKAKRSTLV-LPTGTGKTVIGAFFLKKLFESGKIKKAIVLVPTRIL 60
Query: 166 VMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMK 225
V +Q + +G+ E + G S RA WK R+ TP+ + D+ ++
Sbjct: 61 V-EQTHNFYRSLGLNSE---KIYGIFSKDVRAEVWKKARIAISTPETVYNDLD----VIG 112
Query: 226 YLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYIST 285
+ +V+DE H A G+ AY +RE + + R+ P +++ I+ +I
Sbjct: 113 KVDAVVVDECHHAVGDDAYAKVLRE---IDCEYRLGLSAFIPRRRRKEIEELIG------ 163
Query: 286 LEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI 323
E R S + + YV E+ E + ++ +EI + I
Sbjct: 164 -EMREWSVESLRGYVAEWIGEVFETKFNKKEMEIYDEI 200
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 20/166 (12%)
Query: 407 EKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF-KTKDPKHSRV 465
+KL S +F +K+ L +++S+S + KLSK+LE L D K +D
Sbjct: 211 DKLVYTSALKFFAKDG-----ALALKESLS---RETKLSKLLEDLNDEIMKLRDLHKLNY 262
Query: 466 I-----IFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA 520
+ ++ F S+ + + K E + + A +K ++ LE RA
Sbjct: 263 LFRALELYEGFEKSIVFVERVIVA----KKLFEILSKDFDTALIVGRKKRREEDLE--RA 316
Query: 521 GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
V+V+TS GEEG+D+ DL+I + SPLR IQR GR RK
Sbjct: 317 KEAKVVVSTSAGEEGVDLPTADLLINWSNTSSPLRFIQRHGRIMRK 362
>gi|344313229|gb|AEN04474.1| probable ATP-dependent helicase LGP2 [Carassius auratus]
Length = 680
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 111/488 (22%), Positives = 205/488 (42%), Gaps = 47/488 (9%)
Query: 106 VNVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164
+ + +R YQ + + AL N+++ LPTG GKT A V + K+
Sbjct: 1 MEITLRSYQEEVVQAALKGENSIIWLPTGGGKTRAAVYVAKKHLETTRNAKVAVLVNKVH 60
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKR--ASFWKTKRVFFVTPQVLEKDIQSGT- 221
LV Q N + + + + S K K + T Q+LE + S
Sbjct: 61 LVDQHFNNEFNPY-LGKAYRVKAISGDSSDKDLFGRLVKDSDLIICTAQILENALNSSEE 119
Query: 222 ---CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSK--- 270
+ L+IDE H Y + + V+ ++L LTA+PG+
Sbjct: 120 EKHVELTDFSLLIIDECHHTQKESVYNKIMGRYVEKKVRKERKLPQVLGLTASPGTGGNK 179
Query: 271 --QQTIQHII------DNLYISTLEYRNESDQDVSSYVHNRKIELIEVE----MGQEAVE 318
+ ++H++ D++ +ST Y ++ + V ++ +++E G
Sbjct: 180 TLAKAVEHVLQICANLDSVIVSTKNYASKLKEVVPR--PRKQYDIVEKRALDPFGDHLKL 237
Query: 319 INNRIWEVIRPYTSR-LSAIGLLQNRDYQT-LSPVDLLNSRDKFRQAPPPNLPQIKFGEV 376
+ + I E + SR L +G +DY+ + ++ +++ R L +
Sbjct: 238 MMSLIHEFMPSTVSRSLREVG---TQDYEADVVELEKTGVKEENRLITQCAL------HL 288
Query: 377 EAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSIS 436
Y AL+ +R + + + + Y KL G+ F+ D +V+L Q ++
Sbjct: 289 RQYNDALLIHDTVRMVDAFNVLDEFYNSRSNKLLDGT-DFFLQGLFDENRVEL-KQLALD 346
Query: 437 HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEF 494
++PKL+++ L+ FK + K SR IIFS R + + + +L VK +
Sbjct: 347 ARYENPKLAQLQRTLLKEFK--ENKMSRGIIFSKTRRGTHCLYDWVNANHELQKVKISAG 404
Query: 495 IGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
I +G +Q Q+ ++ FR G N++++TS+ EEGLDI E +LV+ + + +
Sbjct: 405 ILTGTGTGVNHMNQNKQKNTIKDFRLGHLNLLISTSVAEEGLDIAECNLVVRYGLLTNEI 464
Query: 555 RMIQRMGR 562
Q GR
Sbjct: 465 AQQQASGR 472
>gi|119478976|ref|XP_001259517.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
gi|158706438|sp|A1DE13.1|DCL1_NEOFI RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl1; Includes: RecName:
Full=ATP-dependent helicase dcl1
gi|119407671|gb|EAW17620.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
Length = 1538
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 122/509 (23%), Positives = 204/509 (40%), Gaps = 75/509 (14%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVV----IYNFFRWFPDGK----IVFAAPS 162
R+YQ + + A NT+ L TG GKTLIA ++ I N +GK F S
Sbjct: 128 REYQIELFERAKTQNTIAVLDTGSGKTLIAVLLLRHTILNELDNRANGKPHRVSFFLVDS 187
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR--VFFVTPQVLEKDIQSG 220
L QQ N + G KR +R V T ++L + + +
Sbjct: 188 VTLAYQQAAVLRNNIDQNVAHFFGAMGTDLWDKRTWDEHLQRNMVIVCTAEILNQCLLNS 247
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRE--LMSVPVQL-RILALTATPGSKQQTIQHI 277
M + L+ DEAH A ++ Y IR+ + P Q R+ +TA+P + I
Sbjct: 248 YVKMDQINLLIFDEAHHAKKDHPYARIIRDSYFKAQPSQRPRVFGMTASPIDTKGDITEA 307
Query: 278 IDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIR---PYTSRL 334
L E+ D S KI L+ E+ +E ++W R P+ + L
Sbjct: 308 ATRL---------ETLLD-SRIATTSKITLLR-EVVSRPIE---KVWAYNRLESPFATEL 353
Query: 335 SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLS 394
+ + + + L V +R A + K+ A++ AL
Sbjct: 354 YKLMDTRYGNIKVLEGV--------YRFAWHASSELGKWCSDRAWWHAL----------- 394
Query: 395 SHGIRPAYEMLEEKLKQGSF--ARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLV 452
+ + P E KL + + A + +DI +++ + ++ P+L L V
Sbjct: 395 ADDVLPKLEGNISKLVESNTLNAEHGAVFKDIIRIREASETVKNYSFADPELPGELSPKV 454
Query: 453 DHFKTKDPKH------SRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASK 504
+ + KH ++ I+F+ R + + I+N L T+ ++ ++ IG G
Sbjct: 455 QLLRMELSKHFSDTTGTKCIVFTQKRYTAK-ILNELFTVLNIPHLRPGVLIGVRPGDIGG 513
Query: 505 GQSQKVQQAV-LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
QQ + L KFR G N + ATS+ EEGLDI + +LV+ FD + ++ +Q GR
Sbjct: 514 MNVTFRQQFLALVKFRTGEINCLFATSVAEEGLDIPDCNLVVRFDLYRTLIQYVQSRGRA 573
Query: 564 --------------GRKHDGRIPHIFKPE 578
+H+GR+ I + E
Sbjct: 574 RHCTSTYAIMVEKDNAEHEGRLKEIREAE 602
>gi|344313225|gb|AEN04472.1| retinoic acid-inducible protein I [Carassius auratus]
Length = 947
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 117/519 (22%), Positives = 225/519 (43%), Gaps = 76/519 (14%)
Query: 108 VPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFP-DGKIVFAAPSRPL 165
+ +R+YQ +T A+ NT++ PTG GKT++A + + P KIVF A +
Sbjct: 255 IKLREYQKELTAAAVQGQNTIICAPTGCGKTIVALAICEYHLKQSPRRAKIVFLATKVDV 314
Query: 166 VMQQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFW--KTKRVFFVTPQVLEKDIQSGT 221
QQ + H P + M G + + + W + + +T Q+L +QSG
Sbjct: 315 YEQQYKLFMKHFSRTDPSIRVMGMCGDMDLSVQ---WLIENHDIVVMTAQILVNALQSGE 371
Query: 222 C-LMKYLVCLVIDEAHRATGNYAYCTAIRELM---------SVPVQLRILALTATPG--- 268
++ L +++DE H TG + Y + + S+P +I+ LTA+ G
Sbjct: 372 VPSLELLSLILLDECHNTTGKHPYNNIMTRYLDTKLSSSTHSLP---QIVGLTASVGIGS 428
Query: 269 -----SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEV--EMGQEAVEINN 321
+ I + NL + + ++ +YVH + E EV + I
Sbjct: 429 FKNRLEAENNILQLCANLDTRVITTVKKQLDELKTYVHTPEKEFFEVSKHTYDPFIRIIK 488
Query: 322 RIWEVIRPYTSR---LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEA 378
I I + + ++ +QNR+Y + + S K R+ + Q+K E
Sbjct: 489 NIMSNIEQLAQKAFNIESLSNIQNREYGSQKYEQWIVSVQKSRR-----VIQMKDTNEER 543
Query: 379 YFGALITLY--HIRR----LLSSHGIRP--AYEMLE---EKLKQGSF---ARFMSKNEDI 424
+ Y H+R+ L+ + R A + L+ E+++ + R ++ D
Sbjct: 544 RICRELYNYTEHLRKYNDALIINEDARTKDALDYLDGFFEQVRNAGYDETERKLTALYDS 603
Query: 425 RKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT 484
++ +LL S G Q+PKL ++ +L + ++ D + +++ R + +A+
Sbjct: 604 QRPQLL--HLASEGQQNPKLEELKFILEEEYQNNDETRTVLLV------KTRALADAMKK 655
Query: 485 IGDLVKATEFI--GQSSGKASKGQ------SQKVQQAVLEKFRAGGYN-----VIVATSI 531
D + +F+ G GK K + ++ VL+ F++ N +++ATS+
Sbjct: 656 WIDDTDSLKFLKPGVLIGKGRKSNFTGSVMTLTSKKGVLDSFKSTDQNSDQSKILIATSV 715
Query: 532 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
+EG+DI + +LV+ ++ + ++M+Q GR GR R
Sbjct: 716 ADEGIDIPQCNLVLMYEYVGNVVKMVQVRGR-GRAQGSR 753
>gi|348585927|ref|XP_003478722.1| PREDICTED: interferon-induced helicase C domain-containing protein
1-like [Cavia porcellus]
Length = 1022
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALA---TIGDL-VKATEFI 495
++ KLSK+ +++ F T+ K +R IIF+ R S + +A D+ +KA I
Sbjct: 694 ENEKLSKLRNTILEQF-TRTEKPTRGIIFTKTRQSAYALSQWIAENEKFADVGIKAHHLI 752
Query: 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
G K +Q Q+ V+ KFR G N+++AT++ EEGLDI E +++I + + +
Sbjct: 753 GAGHSSEFKHMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIIIRYSLVTNEIA 812
Query: 556 MIQRMGR 562
M+Q GR
Sbjct: 813 MVQARGR 819
>gi|403179645|ref|XP_003337958.2| hypothetical protein PGTG_19535 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165150|gb|EFP93539.2| hypothetical protein PGTG_19535 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1431
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 113/496 (22%), Positives = 196/496 (39%), Gaps = 83/496 (16%)
Query: 106 VNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP--------DGKI- 156
+ +P R YQ + + A N ++ TG GKT++A N W + +I
Sbjct: 18 IKIP-RLYQTELLEEAKKRNIIIRADTGTGKTIVAV----NLIAWTAVKTKAKNKNHQIQ 72
Query: 157 VFAAPSRPLVMQQIEACHNIVGIPQEWTIDM---TGQISPTKRASFWKTKR--------- 204
F P+RPL QQ E I + T+ + TG + P W ++
Sbjct: 73 AFLVPTRPLAHQQAEY------IQKHCTLRIKAYTGDLQP----ELWNIRKWHSELNEVD 122
Query: 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRE-----LMSVPVQL- 258
V T Q+ I G ++ + L+ DEAH N+ Y +R V+L
Sbjct: 123 VLVSTAQIFYDLISKGYWKLEDVSLLIFDEAHHCRKNHVYNQIMRSHYHRLAKDSTVRLP 182
Query: 259 RILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVE 318
+IL LTA+P I + +++ D+ S ++ EV+ E V
Sbjct: 183 KILGLTASP---------------IWNFKDLEKAESDIKSLQSALAAQIYEVKKHTEDVC 227
Query: 319 INNRIWEVIRPYTSRLSAIGLLQNRDYQTL--SPVDLLNSRDKFRQAPPPNLPQIKFGEV 376
+N + + D+Q L P D +N A P + ++ +
Sbjct: 228 RHN--------FKPNEQVVYFEPAPDFQQLPHPPWDQINKLLSL-HASPKMIAAVESVSL 278
Query: 377 E--AYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFA-RFMSKNEDIRKVKLLMQQ 433
+ Y +L L ++ LL+ G + +++ +L ++ R S +++ KL+
Sbjct: 279 DLGTYAYSLAVLDWLKSLLTIGG---SNQLMSGRLVDPNYQERIQSLIKEVE--KLVDID 333
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL---ATIGDLVK 490
I S K+ + ++LV++ + D + I+F R + + L + D ++
Sbjct: 334 DIPENQLSSKVIALYKILVNYKEKDDHNNFLCIVFVERRQHAQLLPILLERNVQLKDFLR 393
Query: 491 ATEFIGQSSGKASK----GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
G SG + + Q + KFR G +N+ +ATS+ EEGLD +VI
Sbjct: 394 PAALTGHGSGNENDLIGIKMDSRTQNRTVAKFRTGEHNLTIATSVAEEGLDFRSCRVVIR 453
Query: 547 FDANVSPLRMIQRMGR 562
FD + IQ GR
Sbjct: 454 FDLITTWKGYIQSRGR 469
>gi|389749088|gb|EIM90265.1| hypothetical protein STEHIDRAFT_93138 [Stereum hirsutum FP-91666
SS1]
Length = 1500
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 117/497 (23%), Positives = 205/497 (41%), Gaps = 60/497 (12%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW--FPDGKIV-FAAPSRPLVM 167
R YQ I A SN + L TG GKT I+ ++I + GKIV F P PLV
Sbjct: 15 RQYQEEIFIRARHSNVIAVLGTGSGKTYISILLIKSITSQSHLSAGKIVVFLVPKVPLVE 74
Query: 168 QQ---IEACHNIVGIPQEWTIDMTG--QISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC 222
QQ IE + + + D ++ + F+ + + +T QV +
Sbjct: 75 QQSVFIEKQLPSLRVRKVHGGDALAGDMLNRAEWKKFFDSADIVVMTAQVFVNALTHSHW 134
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELM--SVPVQL-RILALTAT----PGSKQQTIQ 275
+ + L+ DE H N+ Y +R+ P Q +I +TA+ P Q+ +Q
Sbjct: 135 SIDKVSLLIFDECHHTRLNHPYNVIMRDSYKHCSPSQRPKIFGMTASVVWRPSRAQEDLQ 194
Query: 276 HIIDN---------LYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNR---- 322
+ N ++ L + + ++V + +++R +E+ G A+ +
Sbjct: 195 ELEANLVAKAITVQMHHEELGHHSPKPKEVCAPIYDR-LEIDIKAAGSYALPVAPLDDPA 253
Query: 323 -IWEVIRP-YTSRLSAIG--LLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEA 378
W ++ YT+ L +G + Y+ LS D+ RQ P+ + + +
Sbjct: 254 IPWAIVDARYTTALRNLGPYAAETFLYKDLS--------DRLRQFIQPSQAD-EMSRLRS 304
Query: 379 YFGALITLYHI-RRLLSSHGIRPAYEMLEE-----KLKQGSFARFMSKNEDIRKVKLLMQ 432
A+ T +LL +R Y+++ E ++ + +E+ +
Sbjct: 305 QLQAMHTESSTPEQLLRDPEMRQIYDLITEYSPLFEMPGPVHGSSIPSSENQFPPGWVFD 364
Query: 433 QSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL---V 489
S SPK+ ++EVL + F S+ I+F R + L+ + +L V
Sbjct: 365 LSWC----SPKVHVLVEVLRNQFTPA----SQGIVFVEQRHVASGLARLLSKVDELKGVV 416
Query: 490 KATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA 549
+ EF+G +S +G Q VLE FR N+++AT + EEGLD D+V+ FD+
Sbjct: 417 RCAEFVGHAS-DTGEGMKAGEQNRVLESFRKRSINLLIATQVAEEGLDFPACDVVVRFDS 475
Query: 550 NVSPLRMIQRMGRTGRK 566
+ +Q GR K
Sbjct: 476 IQHLVGFVQSRGRARHK 492
>gi|377643882|gb|ADC81089.2| retinoic acid-inducible protein I [Ctenopharyngodon idella]
Length = 947
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 116/513 (22%), Positives = 220/513 (42%), Gaps = 64/513 (12%)
Query: 108 VPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFP-DGKIVFAAPSRPL 165
+ +R+YQ +T A+ NT++ PTG GKT++A + + P KIVF A +
Sbjct: 255 IKLREYQKELTAAAVQGQNTIICAPTGCGKTIVALAICEYHLKQSPRRAKIVFLATKVDV 314
Query: 166 VMQQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFW--KTKRVFFVTPQVLEKDIQSGT 221
QQ + H P + M G + + + W + + +T Q+L +QSG
Sbjct: 315 YEQQYKLFMKHFSRTDPSIRVMGMCGDMDLSVQ---WLIENHDIVVMTAQILVNALQSGE 371
Query: 222 C-LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL------RILALTATPG------ 268
++ L +++DE H TG + Y + + + +I+ LTA+ G
Sbjct: 372 VPSLELLSLILLDECHNTTGKHPYNNIMTRYLDTKLSSSTHSLPQIVGLTASVGIGSFKN 431
Query: 269 --SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEV--EMGQEAVEINNRIW 324
+ I + NL + + ++ +YVH + E EV + I I
Sbjct: 432 RLEAENNILQLCANLDTRVITTVKKQLDELKTYVHTPEKEFFEVSKHTYDPFIRIIKNIM 491
Query: 325 EVIRPYTSR---LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFG 381
I + + ++ +QNR+Y + + S K + Q+K E
Sbjct: 492 SNIEQLAQKAFNIESLSNIQNREYGSQKYEQWIVSVQK-----SCRVIQMKDTNEERRIC 546
Query: 382 ALITLY--HIRR----LLSSHGIRP--AYEMLE---EKLKQGSF---ARFMSKNEDIRKV 427
+ Y H+R+ L+ + R A + L+ E+++ + R ++ D ++
Sbjct: 547 RELYNYTEHLRKYNDALIINEDARTKDALDYLDGFFEQVRNAGYDETERKLTALYDSQRP 606
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD 487
+LL S G Q+PKL ++ +L + ++ D +R ++F R ++ D M D
Sbjct: 607 QLL--HLASEGQQNPKLEELKFILEEEYQNND--ETRTVLFVKTR-ALADAMKKWIDDTD 661
Query: 488 ---LVKATEFIGQSSGKASKGQSQKV--QQAVLEKFRAGGYN-----VIVATSIGEEGLD 537
+K IG+ G + ++ VL+ F++ N +++ATS+ +EG+D
Sbjct: 662 SLKFLKPGVLIGKGRKSNFTGSVMTLTSKKGVLDSFKSTDQNSDQSKILIATSVADEGID 721
Query: 538 IMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
I + +LV+ ++ + ++M+Q GR GR R
Sbjct: 722 IPQCNLVLMYEYVGNVVKMVQVRGR-GRAQGSR 753
>gi|156401322|ref|XP_001639240.1| predicted protein [Nematostella vectensis]
gi|156226367|gb|EDO47177.1| predicted protein [Nematostella vectensis]
Length = 689
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 15/159 (9%)
Query: 425 RKVKLLMQQSISHGAQ------SPKLSKMLEVLVDHFKTKDPK---HSRVIIFSNFRGSV 475
RK+K + +++I+ Q +PKL K+ E+L+D+ K + H++ I+FS R S
Sbjct: 334 RKLKKIYEKAITEAIQLHGEPRNPKLVKLQELLLDYHKGETESGLDHAKGILFSKTREST 393
Query: 476 RDIMNALATIGDL---VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIVATSI 531
+ + +L + +G S G+ G +Q+ Q+ V+ KFRAG N+I+AT++
Sbjct: 394 IALEKWIKETPELSQELMPLRLVGNSDGRG--GMTQREQEEVIAKFRAGSECNIIIATTV 451
Query: 532 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
EEGLDI + VI +D + + +Q GR K G+
Sbjct: 452 AEEGLDIDDCSYVIRYDMMGNEISSVQSRGRVRTKTGGQ 490
>gi|63054443|ref|NP_588215.2| dicer [Schizosaccharomyces pombe 972h-]
gi|1351642|sp|Q09884.1|DCR1_SCHPO RecName: Full=Protein Dicer; AltName: Full=Cell cycle control
protein dcr1; AltName: Full=RNA interference pathway
protein dcr1; Includes: RecName: Full=Endoribonuclease
dcr1; Includes: RecName: Full=ATP-dependent helicase
dcr1
gi|157310516|emb|CAB41233.2| dicer [Schizosaccharomyces pombe]
Length = 1374
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 115/498 (23%), Positives = 204/498 (40%), Gaps = 91/498 (18%)
Query: 110 VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW--------FPDGKI-VFAA 160
+R YQ + A NTL+ + TG GKTL+A +I KI VF
Sbjct: 12 LRKYQQDVYNIASKQNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVFLV 71
Query: 161 PSRPLVMQQIEACHN----IVGIPQ-EWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEK 215
PLV QQ E + VG+ E +I+M+ Q+ + V +T +
Sbjct: 72 NKVPLVFQQAEYIRSQLPAKVGMFYGELSIEMSEQLLTNIILKY----NVIVITADLFYL 127
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIREL------------MSVPVQLRILAL 263
+ G + L ++ DE H A GN AY + + ++P RI +
Sbjct: 128 FLARGFLSINDLNLIIFDECHHAIGNDAYARIMNDFYHRAKAVLSKKHFTLP---RIFGM 184
Query: 264 TATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI 323
TA+P + ++ NLY ++ D N + + + V +N++
Sbjct: 185 TASPFTGKK------GNLYHRLYQWEQLFDSKAHVVSENELADYFCLP-EESYVMYSNKL 237
Query: 324 WEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGAL 383
V+ P S + +TL L++ R I G +FG
Sbjct: 238 --VVPPSDSIIKKCE-------ETLQGCKLIS-----RAVKTALAETIDMG---LWFGEQ 280
Query: 384 ITLYHIRRLLSSHGIRPAYEMLEEK-LKQGSFARFMSKNED--IRKVKLLMQ-----QSI 435
+ LY + + +E K LK+ + + +S +E+ I ++K+ ++ +
Sbjct: 281 VWLYLV-------------DFVETKRLKKKALGKQLSDDEELAIDRLKIFVEDWKNNKYS 327
Query: 436 SHGAQSP---------KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG 486
+G + P K+ K+LE+L ++ D R +IF + + + + T+
Sbjct: 328 DNGPRIPVFDSTDVTDKVFKLLELLKATYRKSDS--VRTVIFVERKATAFTLSLFMKTLN 385
Query: 487 -DLVKATEFIGQS-SGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
++A FIG S + + + Q+ L KF+ G YNV++AT++ EEG+D+ +LV
Sbjct: 386 LPNIRAHSFIGHGPSDQGEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLV 445
Query: 545 ICFDANVSPLRMIQRMGR 562
I F+ + + +Q GR
Sbjct: 446 IRFNICRTVTQYVQSRGR 463
>gi|349605522|gb|AEQ00731.1| Interferon-induced helicase C domain-containing protein 1-like
protein, partial [Equus caballus]
Length = 530
Score = 71.2 bits (173), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 9/130 (6%)
Query: 439 AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMN------ALATIGDLVKAT 492
++ KL+K+ +++H+ T+ + +R IIF+ R S + A +G VKA
Sbjct: 200 CENEKLTKLRNTIMEHY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAH 256
Query: 493 EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 257 HLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTN 316
Query: 553 PLRMIQRMGR 562
+ M+Q GR
Sbjct: 317 EIAMVQARGR 326
>gi|149730873|ref|XP_001494380.1| PREDICTED: interferon-induced helicase C domain-containing protein
1 [Equus caballus]
Length = 1022
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 9/130 (6%)
Query: 439 AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKAT 492
++ KL+K+ +++H+ T+ + +R IIF+ R S + + A +G VKA
Sbjct: 692 CENEKLTKLRNTIMEHY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAH 748
Query: 493 EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 749 HLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTN 808
Query: 553 PLRMIQRMGR 562
+ M+Q GR
Sbjct: 809 EIAMVQARGR 818
>gi|395519645|ref|XP_003763953.1| PREDICTED: interferon-induced helicase C domain-containing protein
1 [Sarcophilus harrisii]
Length = 1027
Score = 70.9 bits (172), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 10/130 (7%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS-------VRDIMNALATIGDLVKAT 492
++ KL+K+ +++ F D +R IIF+ R S ++DI A +G VKA
Sbjct: 697 ENEKLTKLRNTILEEFTKTDGSVARGIIFTKTRQSAFALSQWIKDI-EKFAEVG--VKAH 753
Query: 493 EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
IG + K +Q Q+ V+ FR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 754 HLIGAGNCSEFKPMTQNEQKEVINNFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTN 813
Query: 553 PLRMIQRMGR 562
+ M+Q GR
Sbjct: 814 EIAMLQARGR 823
Score = 41.6 bits (96), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 87/219 (39%), Gaps = 50/219 (22%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPSRP 164
+R YQ + K AL N ++ LPTG GKT +A + + + GK++ P
Sbjct: 316 LRSYQMEVAKPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVMVLVNKVP 375
Query: 165 LVMQQ--------IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKD 216
LV Q ++ + ++G+ + + ++ + V T Q+LE
Sbjct: 376 LVEQHYRKEFKPFLKNWYRVIGVSGDSQLKISF-------PEVVMSNDVIISTAQILENS 428
Query: 217 I-------QSGTCLMKYLVCLVIDEAHRATGNYAY--------------CTAIRELMSVP 255
+ G L + + ++IDE H Y C +E V
Sbjct: 429 LLNSENGDDDGVQLSDFSL-IIIDECHHTHKEAVYNNIMTRYLKQKMKNCRFKKENKPVV 487
Query: 256 VQLRILALTATP---GSKQQT-----IQHIIDNLYISTL 286
Q +IL LTA+P G+K+Q+ I I NL ST+
Sbjct: 488 PQPQILGLTASPGVGGAKKQSKAEEHILKICANLDASTI 526
>gi|363992270|gb|AEW46680.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Pteropus alecto]
Length = 678
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 75/133 (56%), Gaps = 10/133 (7%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+ G ++PKL + ++L F +P + R I+F+ R S ++ L L ++A
Sbjct: 343 TQGPENPKLEMLEQILKKQFG--NPGNPRGIVFTCTRQSAHSLLLWLRQQPGLQTVDIRA 400
Query: 492 TEFIGQSSGKASKG--QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA 549
IG +G +S+G +Q+ QQ V+ KFR G N++VATS+ EEGLDI + ++V+ +
Sbjct: 401 QLLIG--AGNSSRGTTMTQRDQQEVIRKFRVGTLNLLVATSVAEEGLDIPQCNVVVHYGL 458
Query: 550 NVSPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 459 LTNEISMVQARGR 471
Score = 43.9 bits (102), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 77/189 (40%), Gaps = 25/189 (13%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVAKRHLETVDRAKVVVLVNRVHLVTQ 62
Query: 169 QIEA-CHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS---- 219
E H + G W I + G + P R F R + T ++L+ + S
Sbjct: 63 HYEEFSHMLDG---RWAITTLRGDMGP--RPGFGHLARKNDLLICTAELLQMALVSTEEE 117
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSKQQT- 273
+ LV+DE H + Y + + +Q ++L LTA+PG+ + T
Sbjct: 118 EHVELNEFSLLVVDECHHTHKDTVYNIILSRYLQHKLQRMWPLPQVLGLTASPGTGRATN 177
Query: 274 ----IQHII 278
I HI+
Sbjct: 178 LDGAIDHIL 186
>gi|410981129|ref|XP_003996925.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 [Felis catus]
Length = 667
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 6/128 (4%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKATEFI 495
++PKL + ++L + F + D + R I+F+ R S ++ L L ++A I
Sbjct: 336 ENPKLEMLEQILQEQFGSSDGR--RGILFTQTRQSAHSLLLWLQQQPGLQILDIRADLLI 393
Query: 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
G + + +Q+ QQ V+ KFRAG N++VATS+ EEGLDI + ++V+ + + +
Sbjct: 394 GAGNNSQNTHMTQRDQQEVIRKFRAGILNLLVATSVAEEGLDIPQCNVVVRYGLLTNEIS 453
Query: 556 MIQRMGRT 563
M+Q GR
Sbjct: 454 MVQARGRA 461
Score = 44.3 bits (103), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 17/158 (10%)
Query: 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWT 184
N ++ LPTG GKT AA V K+V LV Q E + + + W
Sbjct: 8 NIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHCEEFSRM--LDKRWA 65
Query: 185 I-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----GTCLMKYLVCLVIDEAH 236
I ++G + P RA F R + T ++L+ + S + LV+DE H
Sbjct: 66 ITTLSGDMGP--RAGFGHLARSHDLLICTAELLQMALTSPEEEEHVELNAFSLLVVDECH 123
Query: 237 RATGNYAYCTAIRELMSVPVQL-----RILALTATPGS 269
+ Y + + +Q ++L LTA+PG+
Sbjct: 124 HTHKDTVYNIILSRYLQHKLQRTRPLPQVLGLTASPGT 161
>gi|431890614|gb|ELK01493.1| Putative ATP-dependent RNA helicase DHX58 [Pteropus alecto]
Length = 678
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 75/133 (56%), Gaps = 10/133 (7%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+ G ++PKL + ++L F +P + R I+F+ R S ++ L L ++A
Sbjct: 343 TQGPENPKLEMLEQILKKQFG--NPGNPRGIVFTCTRQSAHSLLLWLWQQPGLQTVDIRA 400
Query: 492 TEFIGQSSGKASKG--QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA 549
IG +G +S+G +Q+ QQ V+ KFR G N++VATS+ EEGLDI + ++V+ +
Sbjct: 401 QLLIG--AGNSSRGTTMTQRDQQEVIRKFRVGTLNLLVATSVAEEGLDIPQCNVVVRYGL 458
Query: 550 NVSPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 459 LTNEISMVQARGR 471
Score = 43.5 bits (101), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 77/188 (40%), Gaps = 23/188 (12%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVAKRHLETVDRAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E ++ + W I + G + P R F R + T ++L+ + S
Sbjct: 63 HYEEFSHM--LDGRWAITTLRGDMGP--RPGFGHLARKNDLLICTAELLQMALVSTEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSKQQT-- 273
+ LV+DE H + Y + + +Q ++L LTA+PG+ + T
Sbjct: 119 HVELNEFSLLVVDECHHTHKDTVYNIILSRYLQHKLQRTWPLPQVLGLTASPGTGRATNL 178
Query: 274 ---IQHII 278
I HI+
Sbjct: 179 DGAIDHIL 186
>gi|354493094|ref|XP_003508679.1| PREDICTED: interferon-induced helicase C domain-containing protein
1 isoform 1 [Cricetulus griseus]
gi|344245797|gb|EGW01901.1| Interferon-induced helicase C domain-containing protein 1
[Cricetulus griseus]
Length = 1022
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL K+ + +++ F TK + SR IIF+ R S + + A +G VKA
Sbjct: 694 ENEKLIKLRKTILEQF-TKTEESSRGIIFTKTRQSTYALSQWITENEKFAEVG--VKAHH 750
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 751 LIGAGHSSEVKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 810
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 811 IAMVQARGR 819
>gi|395826382|ref|XP_003786397.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 2
[Otolemur garnettii]
Length = 665
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + +L + F P R IIF+ R S ++ L L +KA
Sbjct: 330 THGPENPKLEVLERILQEQFG--KPNSPRGIIFTRTRQSAHSLLLWLQQQPGLQMVDIKA 387
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + +Q+ QQ V++KFR G N++V+TS+ EEG+DI ++V+ +
Sbjct: 388 QMLIGSRNSGQRAHMTQRNQQEVIQKFRIGILNLLVSTSVAEEGMDIPHCNVVVRYGLLT 447
Query: 552 SPLRMIQRMGRT 563
+ + M+Q GR
Sbjct: 448 NEISMVQARGRA 459
>gi|328865213|gb|EGG13599.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 760
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 19/164 (11%)
Query: 415 ARFMSKNEDIRKVKLLMQQSISHGAQSP------KLSKMLEVLVDH--FKTKDPKHS--R 464
A+F++ +++K +L QSI+H + + KL K LE+L +H DP R
Sbjct: 464 AKFLTP--EVKKEVVLQIQSITHSSDNENSTNICKLDKALEILEEHNALHQADPSKDQFR 521
Query: 465 VIIFSNFRGSVRDIMNALATIGD------LVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518
I+F R S + L I + K +G S G S Q+ V+E F
Sbjct: 522 AILFVKTRDSAHQLGEILNNISNKSTRYSFTKCVTVVGHGSN-TDGGMSTSKQKEVVEAF 580
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
R G NV+V T++ EEGLD+ E +LVI DA + +IQ GR
Sbjct: 581 RTGKANVVVTTNVLEEGLDVPECNLVIRIDAPSTVTALIQSRGR 624
>gi|157285013|gb|ABV31246.1| dicer-like 4 [Physcomitrella patens]
Length = 1445
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 438 GAQSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEF-- 494
A LS +++L++ + +D R IIF + + R + + L++I L A F
Sbjct: 376 AANIQNLSSKVQLLINVLERCRDTNEMRCIIFVERKITTRVLASLLSSIEVLSPAFRFQS 435
Query: 495 -IGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
G++SG S + K QQ V+E FR G NV+V+T++ EEGLDI LVI FD +P
Sbjct: 436 LAGKNSG--SNDMNHKHQQNVVESFRNGEVNVLVSTNVAEEGLDIQNCHLVIRFDLPNTP 493
Query: 554 LRMIQRMGR 562
+IQ GR
Sbjct: 494 CSLIQSRGR 502
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKI-VFAAPSRPLVM 167
R YQ + A + +V L TG GKT +A +++ + P +I VF PS PLV
Sbjct: 32 RGYQIEALERAKKEDIIVYLETGCGKTHVAVMLLQHIADLIRKPSTRIAVFLCPSVPLVQ 91
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK---------RVFFVTPQVLEKDIQ 218
QQ + + +T G+ + W +K +F +TP +L ++
Sbjct: 92 QQAR-------VVKRYTNFKVGEYYGEVNNNAWNSKAWEAELENTEIFVMTPAILLHNLH 144
Query: 219 SGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL----RILALTATP 267
M + L+ DE H A ++ Y ++E L RIL +TA+P
Sbjct: 145 HCFMRMDCIELLIFDECHHAHSHHPYANIMQEFYHGKEDLYRLPRILGMTASP 197
>gi|395826380|ref|XP_003786396.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 1
[Otolemur garnettii]
Length = 678
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + +L + F P R IIF+ R S ++ L L +KA
Sbjct: 343 THGPENPKLEVLERILQEQFG--KPNSPRGIIFTRTRQSAHSLLLWLQQQPGLQMVDIKA 400
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + +Q+ QQ V++KFR G N++V+TS+ EEG+DI ++V+ +
Sbjct: 401 QMLIGSRNSGQRAHMTQRNQQEVIQKFRIGILNLLVSTSVAEEGMDIPHCNVVVRYGLLT 460
Query: 552 SPLRMIQRMGRT 563
+ + M+Q GR
Sbjct: 461 NEISMVQARGRA 472
Score = 43.9 bits (102), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 18/174 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDRAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWT-IDMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + W+ + ++G + RA F R + T ++L+ + S
Sbjct: 63 HGEEFRRM--LDGRWSMVTLSGDMG--SRAGFGHLARSHDLLICTAELLQTAMTSPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAI-----RELMSVPVQLRILALTATPGS 269
+ LV+DE H + Y + +L P ++L LTA+PG+
Sbjct: 119 HVELTAFSLLVVDECHHTHKDTVYNVILSRYLEHKLQRAPSLPQVLGLTASPGT 172
>gi|354493096|ref|XP_003508680.1| PREDICTED: interferon-induced helicase C domain-containing protein
1 isoform 2 [Cricetulus griseus]
Length = 973
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL K+ + +++ F TK + SR IIF+ R S + + A +G VKA
Sbjct: 645 ENEKLIKLRKTILEQF-TKTEESSRGIIFTKTRQSTYALSQWITENEKFAEVG--VKAHH 701
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 702 LIGAGHSSEVKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 761
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 762 IAMVQARGR 770
>gi|395826384|ref|XP_003786398.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 3
[Otolemur garnettii]
Length = 578
Score = 70.1 bits (170), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + +L + F P R IIF+ R S ++ L L +KA
Sbjct: 336 THGPENPKLEVLERILQEQFG--KPNSPRGIIFTRTRQSAHSLLLWLQQQPGLQMVDIKA 393
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + +Q+ QQ V++KFR G N++V+TS+ EEG+DI ++V+ +
Sbjct: 394 QMLIGSRNSGQRAHMTQRNQQEVIQKFRIGILNLLVSTSVAEEGMDIPHCNVVVRYGLLT 453
Query: 552 SPLRMIQRMGRT 563
+ + M+Q GR
Sbjct: 454 NEISMVQARGRA 465
>gi|402590938|gb|EJW84868.1| hypothetical protein WUBG_04220 [Wuchereria bancrofti]
Length = 596
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 5/137 (3%)
Query: 439 AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIG-- 496
+ ++ KML ++ DP SR IIF R + + + L T+ + + + +G
Sbjct: 222 GEEKEILKMLHTILREQYVSDPA-SRTIIFVTTRKLAQYLSHHLNTVKIVDRTSRAVGFI 280
Query: 497 QSSGKAS--KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
SS ++S GQ+ + Q+ V+E F G V+VATS+ EEGLDI +L+I ++ S
Sbjct: 281 TSSNRSSALNGQTAEEQRTVIENFNQGTLKVLVATSVAEEGLDISACNLIIKYNNTGSER 340
Query: 555 RMIQRMGRTGRKHDGRI 571
+IQR GR KH I
Sbjct: 341 SLIQRRGRARAKHSKSI 357
>gi|351699900|gb|EHB02819.1| Putative ATP-dependent RNA helicase DHX58 [Heterocephalus glaber]
Length = 678
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Query: 436 SHGAQSPKLSKMLEVLVDHFK-TKDPKHSRVIIFSNFRGSVRDIMNAL----ATIGDLVK 490
+HG ++PKL + ++L F + +P R I+F+ R S ++ L G ++
Sbjct: 343 THGPENPKLDMLEQILQTQFGGSANP---RGIVFTRTRQSAHSLLLWLQQQPGLRGMDIR 399
Query: 491 ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
A IG + +Q+ QQ V+ KFR G N++VATS+ EEGLDI + +V+ +
Sbjct: 400 AQMLIGAGNSSQCTHMTQRDQQEVIRKFRVGTLNLLVATSVAEEGLDIAKCSVVVRYGLL 459
Query: 551 VSPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 460 TNEISMVQARGR 471
Score = 44.7 bits (104), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 23/188 (12%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGRNVIIWLPTGTGKTRAAAYVAKRHLETVDRAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E ++G W + ++G + RA F R + T ++L+ + S
Sbjct: 63 HAEEFSLMLG--GRWAMTTLSGDMGA--RAGFGHGARSHDLLICTAELLQMALSSTQEEE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSK----- 270
+ +V+DE H + Y + + + ++ ++L LTA+PG+
Sbjct: 119 HVELTAFSLIVVDECHHTHKDTVYNVILSQYLEHKLRQQWPLPQVLGLTASPGTGGNSKL 178
Query: 271 QQTIQHII 278
Q I+HI+
Sbjct: 179 QGAIEHIL 186
>gi|115441737|ref|NP_001045148.1| Os01g0909200 [Oryza sativa Japonica Group]
gi|75321191|sp|Q5N870.1|DCL3A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3a; AltName:
Full=Dicer-like protein 3a; Short=OsDCL3a
gi|56785369|dbj|BAD82327.1| putative Endoribonuclease Dicer homolog [Oryza sativa Japonica
Group]
gi|113534679|dbj|BAF07062.1| Os01g0909200 [Oryza sativa Japonica Group]
Length = 1651
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 7/174 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF---RWFPDGK-IVFAAPSRPLV 166
R YQ + + A+ NT+ L TG GKT+IA ++I F R GK I+F AP+ LV
Sbjct: 33 RRYQLDVYEVAMRRNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPTVQLV 92
Query: 167 MQQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM 224
QQ E H + Q + Q + + +V +TPQV + +++ ++
Sbjct: 93 TQQCEVIEIHTDFEVEQYYGAKGVDQWTGPRWQEQISKYQVMVMTPQVFLQALRNAFLIL 152
Query: 225 KYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLRILALTATPGSKQQTIQHI 277
+ ++ DE H ATGN+ Y ++E + + +TA+P ++ H+
Sbjct: 153 DMVSLMIFDECHHATGNHPYTRIMKEFYHKSEHKPSVFGMTASPVIRKGISSHL 206
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 12/170 (7%)
Query: 401 AYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDP 460
A +++++L+QG S++ + K G SPKL +++++ +
Sbjct: 365 ALHLIDKRLQQGIDMLLNSESGCVEAAKT--------GYISPKLYELIQIF---HSFSNS 413
Query: 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA 520
+H+R +IF + + + R I + IG L T + + K+Q+ L+ FR+
Sbjct: 414 RHARCLIFVDRKITARVIDRMIKKIGHLAHFTVSFLTGGRSSVDALTPKMQKDTLDSFRS 473
Query: 521 GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570
G N++ T + EEG+ + E VI FD + +Q GR R+ D +
Sbjct: 474 GKVNLLFTTDVAEEGIHVPECSCVIRFDLPRTTRSYVQSRGR-ARQEDSQ 522
>gi|157285011|gb|ABV31245.1| dicer-like 3 [Physcomitrella patens]
Length = 1641
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF---RWFPDGK-IVFAAPSRPLV 166
R YQ + AL NT++ L TG GKTL+A ++I + R D + IVF AP+ LV
Sbjct: 69 RRYQQQAFEAALNKNTILYLETGCGKTLVAVLLIKSLAKNTRLENDKRLIVFLAPTVILV 128
Query: 167 MQQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQSG 220
QQ H + + + + + + RA W+T+ V +TPQV ++Q G
Sbjct: 129 QQQARVIRIHTDLNVGEYYG---SKNVDTWSRAE-WQTQIAEVEVMVMTPQVFLNNLQHG 184
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL----RILALTATPGSKQ 271
M + L+ DE H A N+AY ++ V V RI +TA+P +K+
Sbjct: 185 FLKMNIVELLIFDECHHAHKNHAYAQIMKGFYHVNVDKGRLPRIFGMTASPVTKK 239
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 431 MQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS---VRDIMNALATIGD 487
+Q ++S G +PK+ ++ VL KD K IIF R + + ++N L + +
Sbjct: 411 LQDAVSKGYLTPKVYHLIGVLFHKRSMKDVKR---IIFVERRMAAVVLAYLVNDLQCLRE 467
Query: 488 LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
++ G S G + +++ QQ + F G N++VAT + EEG+D+ VI F
Sbjct: 468 NFRSESICGASIGPHT---TRREQQCTMTAFNKGEINLLVATELAEEGIDVKNCGEVIRF 524
Query: 548 DANVSPLRMIQRMGRTGR 565
+ + IQ GR R
Sbjct: 525 NLPKTLRSNIQSRGRARR 542
>gi|351694555|gb|EHA97473.1| Interferon-induced helicase C domain-containing protein 1
[Heterocephalus glaber]
Length = 1026
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 440 QSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKATEF 494
++ KL+K+ +++ + KT+ P H IIF+ R S + + G VKA
Sbjct: 698 ENEKLTKLRNTILEQYTKTEKPAHG--IIFTKTRQSAYALSQWITENGKFAEVGVKAHHL 755
Query: 495 IGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E +++I + + +
Sbjct: 756 IGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIIIRYGLVTNEI 815
Query: 555 RMIQRMGR 562
M+Q GR
Sbjct: 816 AMVQARGR 823
>gi|19343863|gb|AAH25508.1| Ifih1 protein [Mus musculus]
Length = 467
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV----RDIM-NA-LATIGDLVKATE 493
++ KL K+ +++ F T+ + SR IIF+ R S + IM NA A +G VKA
Sbjct: 139 ENEKLIKLRNTILEQF-TRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVG--VKAHH 195
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 196 LIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNE 255
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 256 IAMVQARGR 264
>gi|13278456|gb|AAH04031.1| Ifih1 protein, partial [Mus musculus]
Length = 514
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV----RDIM-NA-LATIGDLVKATE 493
++ KL K+ +++ F T+ + SR IIF+ R S + IM NA A +G VKA
Sbjct: 186 ENEKLIKLRNTILEQF-TRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVG--VKAHH 242
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 243 LIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNE 302
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 303 IAMVQARGR 311
>gi|74142317|dbj|BAE31920.1| unnamed protein product [Mus musculus]
Length = 444
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV----RDIM-NA-LATIGDLVKATE 493
++ KL K+ +++ F T+ + SR IIF+ R S + IM NA A +G VKA
Sbjct: 116 ENEKLIKLRNTILEQF-TRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVG--VKAHH 172
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 173 LIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNE 232
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 233 IAMVQARGR 241
>gi|74225485|dbj|BAE31652.1| unnamed protein product [Mus musculus]
Length = 1025
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM-----NA- 481
K+L + + + ++ KL K+ +++ F T+ + SR IIF+ R S + NA
Sbjct: 685 KMLKKLAENPKYENEKLIKLRNTILEQF-TRSEESSRGIIFTKTRQSTYALSQWIMENAK 743
Query: 482 LATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
A +G VKA IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E
Sbjct: 744 FAEVG--VKAHHLIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKEC 801
Query: 542 DLVICFDANVSPLRMIQRMGR 562
++VI + + + M+Q GR
Sbjct: 802 NIVIRYGLVTNEIAMVQARGR 822
>gi|157822253|ref|NP_001102669.1| interferon-induced helicase C domain-containing protein 1 [Rattus
norvegicus]
gi|149022117|gb|EDL79011.1| similar to HELICARD (predicted) [Rattus norvegicus]
Length = 1027
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL K+ +++ F T+ + SR IIF+ R S + + A +G VKA
Sbjct: 699 ENEKLIKLRNTILEQF-TRSEESSRGIIFTKTRQSTYALSQWIMENEKFAEVG--VKAHH 755
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 756 LIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNE 815
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 816 IAMVQARGR 824
>gi|257096036|ref|NP_082111.2| interferon-induced helicase C domain-containing protein 1 isoform 1
[Mus musculus]
gi|62510931|sp|Q8R5F7.1|IFIH1_MOUSE RecName: Full=Interferon-induced helicase C domain-containing
protein 1; AltName: Full=Helicase with 2 CARD domains;
Short=Helicard; AltName: Full=Interferon induced with
helicase C domain protein 1; AltName: Full=Melanoma
differentiation-associated protein 5; Short=MDA-5;
AltName: Full=RIG-I-like receptor 2; Short=RLR-2
gi|18698981|gb|AAL77205.1| HELICARD [Mus musculus]
gi|132252386|gb|ABO33313.1| melanoma differentiation-associated protein 5 [Mus musculus]
Length = 1025
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM-----NA- 481
K+L + + + ++ KL K+ +++ F T+ + SR IIF+ R S + NA
Sbjct: 685 KMLKKLAENPKYENEKLIKLRNTILEQF-TRSEESSRGIIFTKTRQSTYALSQWIMENAK 743
Query: 482 LATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
A +G VKA IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E
Sbjct: 744 FAEVG--VKAHHLIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKEC 801
Query: 542 DLVICFDANVSPLRMIQRMGR 562
++VI + + + M+Q GR
Sbjct: 802 NIVIRYGLVTNEIAMVQARGR 822
>gi|148695044|gb|EDL26991.1| interferon induced with helicase C domain 1 [Mus musculus]
Length = 1025
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 428 KLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM-----NA- 481
K+L + + + ++ KL K+ +++ F T+ + SR IIF+ R S + NA
Sbjct: 685 KMLKKLAENPKYENEKLIKLRNTILEQF-TRSEESSRGIIFTKTRQSTYALSQWIMENAK 743
Query: 482 LATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
A +G VKA IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E
Sbjct: 744 FAEVG--VKAHHLIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKEC 801
Query: 542 DLVICFDANVSPLRMIQRMGR 562
++VI + + + M+Q GR
Sbjct: 802 NIVIRYGLVTNEIAMVQARGR 822
>gi|432867922|ref|XP_004071339.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like [Oryzias
latipes]
Length = 681
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 116/498 (23%), Positives = 208/498 (41%), Gaps = 79/498 (15%)
Query: 113 YQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ-- 169
YQ + + AL N ++ LPTG GKT A V + K+V LV Q
Sbjct: 9 YQEEVVERALKGENIIIWLPTGGGKTRAAVYVAKRHLETTANAKVVVLVNMVHLVDQHYS 68
Query: 170 ------IEACHNIV---GIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI--- 217
+ + +N++ G+ +E D G++ + V T Q+L +
Sbjct: 69 KEFKPHLGSLYNLIKVSGVSEE--KDFFGKVV--------QRNDVIICTAQILYNALIDK 118
Query: 218 -QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV----QL-RILALTATPGSK- 270
++ + + L+IDE H Y +R M + QL +IL LTA+PG+
Sbjct: 119 EEAKHVELSDITLLIIDECHHTHKEAVYNKVMRCYMEKKLKGERQLPQILGLTASPGTGG 178
Query: 271 ----QQTIQHII------DNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEIN 320
+ ++H++ D+ +ST Y E + V R ++ ++ + A +
Sbjct: 179 ARILEDAVEHVLEICANLDSAIVSTKNYEPELMKKVP-----RPVKTFDIVEKRHADPLG 233
Query: 321 NRI-WEVIR-------PYTSRLSAIGLLQNRDYQT-LSPVDLLNSRDKFRQAPPPNLPQI 371
+ + W +++ P +RL G ++Y+ + ++ R+ R L
Sbjct: 234 DHLKWMMLQIHDFMNLPRDARLRQCG---TQEYEADVVILEQRGVRENNRLVAQCAL--- 287
Query: 372 KFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLM 431
+ Y AL+ +R + + + Y+ G+ + E+ +V+L
Sbjct: 288 ---HLRQYNDALLINDTLRMMDAYRSLEEFYDSKTTTAMDGTDFFLLGLFEE-NQVELRK 343
Query: 432 QQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMN------ALATI 485
+ SH ++P ++K+ VL+ F SR I+FS R S R + + AL T
Sbjct: 344 LAADSH-FENPNMAKLESVLLQQFGP--SVKSRGILFSKTRQSTRCLFDWVLKSRALQTA 400
Query: 486 GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
G VKA G +G Q++ Q + +FR G N++++TS+ EEGLDI E +LV+
Sbjct: 401 G--VKAAILTGAGNGITYMTQNE--QAETIRRFRQGDLNLLISTSVAEEGLDIPECNLVV 456
Query: 546 CFDANVSPLRMIQRMGRT 563
+ + + Q GR
Sbjct: 457 RYGLLTNEIAQQQASGRA 474
>gi|20385628|gb|AAM21359.1| melanoma differentiation associated gene 5-like protein [Mus
musculus]
Length = 1025
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM-----NA-LATIGDLVKATE 493
++ KL K+ +++ F T+ + SR IIF+ R S + NA A +G VKA
Sbjct: 697 ENEKLIKLRNTILEQF-TRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVG--VKAHH 753
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 754 LIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNE 813
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 814 IAMVQARGR 822
>gi|132252411|gb|ABO33314.1| melanoma differentiation-associated protein 5 [Mus musculus]
gi|158699346|gb|ABW76702.1| melanoma differentiation-associated protein 5 [Mus musculus]
Length = 1025
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM-----NA-LATIGDLVKATE 493
++ KL K+ +++ F T+ + SR IIF+ R S + NA A +G VKA
Sbjct: 697 ENEKLIKLRNTILEQF-TRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVG--VKAHH 753
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 754 LIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNE 813
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 814 IAMVQARGR 822
>gi|167234451|ref|NP_001107840.1| Dicer-2 [Tribolium castaneum]
gi|270002830|gb|EEZ99277.1| hypothetical protein TcasGA2_TC001108 [Tribolium castaneum]
Length = 1623
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 108/490 (22%), Positives = 205/490 (41%), Gaps = 52/490 (10%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNF----FRWFPD-GKI-VFAAPSRP 164
R+YQ + + A+ NT++ LPTG GKT IA +V+ R + D GKI V S
Sbjct: 10 RNYQVNLMEIAIRENTIIYLPTGSGKTFIAIMVLKQLCAPILRPYSDGGKISVILVNSVA 69
Query: 165 LVMQQIE-----ACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS 219
LV Q + A ++ E +D + ++ + +V +T Q++ I +
Sbjct: 70 LVDQHGKYVRDHATFSVGTYTGEMNVDFWSEAEWEQQ---FNKYQVVIMTSQIMVNLINN 126
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIID 279
+ + ++ DE H + ++ S + R+L LTAT + + ++D
Sbjct: 127 RFIDLGKVNLMIFDECHHGVEDQPMRQIMKHFHSCTDKPRVLGLTATLLNGNCKLSKVMD 186
Query: 280 NLYISTLEYRN-----ESDQDVSSYVHNRKIELIEV----EMGQEAVEINNRIWEVIRPY 330
+ + + + E V Y N + EL +V + +A ++ N + ++I
Sbjct: 187 EIRSLEVTFHSKVATVEGLDVVVGYSTNPQ-ELFKVCQPGALSLDAKQVLNNLRQLINDL 245
Query: 331 -----TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQI-KFGEVEAYFGALI 384
+++ LLQ+ + L P D+L S ++ + FG A +I
Sbjct: 246 EHINIKDEQNSVNLLQSETLKPLEPSDVLKSLRNLISDLMIHIEMLGAFGGHIACVAHMI 305
Query: 385 TLYHIRRLLSSHG--IRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSP 442
+ I++ +H I Y M + M+ E + K++ S
Sbjct: 306 QIERIKKHCQNHQLFIVLNYVMTIMGTTKLLLEETMAGYEPLEKIRKF---------SSD 356
Query: 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL------VKATEFIG 496
K+ K+ E+L D +KTK + ++F+ R + + + + + + +K+ +G
Sbjct: 357 KVLKVFEIL-DEYKTKSDEELCCLVFTKRRFTAKVLHHIIDKASQVDPKFYHIKSNFVVG 415
Query: 497 QSSGKASKGQSQ----KVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
+ + + K + VL F + NV+V++++ EEG+DI + LVI FD +
Sbjct: 416 NKNNPYNDTRENLYITKKNREVLNSFVSKEINVLVSSNVLEEGVDIPKCTLVIKFDKSED 475
Query: 553 PLRMIQRMGR 562
IQ GR
Sbjct: 476 YRSYIQSKGR 485
>gi|257096038|ref|NP_001157949.1| interferon-induced helicase C domain-containing protein 1 isoform 2
[Mus musculus]
Length = 976
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV----RDIM-NA-LATIGDLVKATE 493
++ KL K+ +++ F T+ + SR IIF+ R S + IM NA A +G VKA
Sbjct: 648 ENEKLIKLRNTILEQF-TRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVG--VKAHH 704
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 705 LIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNE 764
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 765 IAMVQARGR 773
>gi|432934592|ref|XP_004081944.1| PREDICTED: interferon-induced helicase C domain-containing protein
1-like [Oryzias latipes]
Length = 974
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 125/519 (24%), Positives = 208/519 (40%), Gaps = 82/519 (15%)
Query: 108 VPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPD----GKIVFAAPS 162
+ + DYQ + K AL N ++ LPTG GKT +A + GK+V
Sbjct: 273 ISLWDYQMEVAKPALEGKNIIICLPTGSGKTRVAVYITKEHLDLRRAEGKLGKVVVLVNK 332
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS 219
PLV Q + + ++ S K SF K + + T Q+LE ++
Sbjct: 333 VPLVEQHYTKEFTPY-LKHSYKVERVSGDSQLK-ISFAKIVQRNDIIICTAQILENYLER 390
Query: 220 GT------CLMKYLVCLVIDEAHRATGNYAYCTAI-----------------RELMSVPV 256
T + L ++IDE H AY + +E++ +P
Sbjct: 391 ATSGVDEGVKLSDLSLMIIDECHHTQKGEAYNHIMMRYLKQKHKNKKLKKEQKEIVPLP- 449
Query: 257 QLRILALTATPG--------SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELI 308
+IL LTA+PG ++ I I NL S + R+ D + I+ +
Sbjct: 450 --QILGLTASPGVGRAARLEKAKEHILQICANLDASQIMTRSLRDFKREP---RKSIQTV 504
Query: 309 EVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNL 368
E + ++ RI I + + L+ G L + Y+ S K RQA
Sbjct: 505 EDKKQDPFGDVIKRIMHEIHRH-AELNPTGDLGTQVYEQWSV-------QKERQAAREGD 556
Query: 369 PQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKV 427
+++ E + + L + R+ + + Y EE+ K+ S A +N I
Sbjct: 557 QKVRVCAEYLRQYNNGLILRNTIRMHDALSLLNNY--YEEQYKKKS-APDEEQNIQITDT 613
Query: 428 KLLM-------QQSISHGAQSPK-----LSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475
+ + ++ + A++P+ LSK+ ++ F ++ K +R IIF+ R S
Sbjct: 614 ERFLFNLFKENKKELESLAKNPEYENESLSKLRTEILKEFSSR--KQARGIIFTKTRHSA 671
Query: 476 RDIMNALAT------IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529
+ + IG +K IG K + Q+ VL+KF G N++VAT
Sbjct: 672 ITLNQWIQENPKFDDIG--IKPAYVIGGGDQSDVKPMTAAEQKDVLKKFSTGEVNLLVAT 729
Query: 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD 568
++ EEGLDI + VI + + + MIQ GR GR D
Sbjct: 730 TVAEEGLDIPACNFVIRYGHVTNEIAMIQSQGR-GRAED 767
>gi|51329784|gb|AAH80200.1| Ifih1 protein [Mus musculus]
Length = 976
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM-----NA-LATIGDLVKATE 493
++ KL K+ +++ F T+ + SR IIF+ R S + NA A +G VKA
Sbjct: 648 ENEKLIKLRNTILEQF-TRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVG--VKAHH 704
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 705 LIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNE 764
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 765 IAMVQARGR 773
>gi|348519875|ref|XP_003447455.1| PREDICTED: interferon-induced helicase C domain-containing protein
1-like [Oreochromis niloticus]
Length = 914
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 125/521 (23%), Positives = 211/521 (40%), Gaps = 86/521 (16%)
Query: 108 VPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFF-RWFPDGK---IVFAAPS 162
+ +RDYQ + AL N +V LPTG GKT +A + R +GK ++
Sbjct: 212 IILRDYQMEVAGPALEGKNIIVCLPTGSGKTRVAVYITKEHLDRRKAEGKPRKVIVLVNK 271
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRA--SFWKTKRVFFVTPQVLEKDIQSG 220
PLV Q A + + ++ ++ S K + K + T Q+LE ++
Sbjct: 272 VPLVEQHYSA-EFLPFLKNKYKVERVSGDSQLKISFTEIVKKNDIIICTAQILENYLERA 330
Query: 221 T------CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV-------------PVQL-RI 260
+ L ++IDE H Y + + PV L +I
Sbjct: 331 NGGEDEGVNLSDLTLIIIDECHHTQKGGVYNHIMMRYLKQKHKNKRLIKEQKEPVPLPQI 390
Query: 261 LALTATPG--------SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM 312
L LTA+PG ++ I I NL S + R+ + RKI ++ VE
Sbjct: 391 LGLTASPGVGGATKMEKAEEHILRICANLDASRIMTRSHEE----FKKEQRKI-IVSVED 445
Query: 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRD-------KFRQAPP 365
+E + +VI+ ++AI ++ L+P L S++ K RQA
Sbjct: 446 RRE-----DPFGDVIKKI---MTAI-----HNHAELTPTCDLGSQNYEQWVVQKERQAAK 492
Query: 366 PNLPQIKF-GEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDI 424
+++ E + + L + R+ + Y EE++K+ + K +
Sbjct: 493 DENQKVRVCAEHLRQYSESLNLSNTIRMQDAFSFLNKY--YEEEMKKKTAPEEEHKIQIT 550
Query: 425 RKVKLLM------QQSISHGAQSPK-----LSKMLEVLVDHFKTKDPKHSRVIIFSNFRG 473
+ L ++ + A++P+ LSK+ ++ F ++D +R I+F R
Sbjct: 551 DTERFLFNLFKDNKKELETLAKNPEYENDSLSKLRTKILHEFSSRD--EARGIVFIKTRR 608
Query: 474 SVRDIMN------ALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIV 527
S + A IG VK+ IG K + Q+ VL+KF G N+++
Sbjct: 609 SAIALNQWIQENPKFADIG--VKSAYVIGGGDQSVVKPMTSAEQKDVLKKFGKGQVNLLI 666
Query: 528 ATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD 568
AT++ EEGLDI + VI + + + MIQ GR GR D
Sbjct: 667 ATTVAEEGLDIPACNFVIRYGLVTNEIAMIQAQGR-GRAED 706
>gi|296081735|emb|CBI20740.3| unnamed protein product [Vitis vinifera]
Length = 1688
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 21/175 (12%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGK---IVFAAPSRPLV 166
R YQ+ + + A NT+ L TG GKT+IA ++I + DG+ I+F AP+ LV
Sbjct: 47 RSYQWKVFEVAKRRNTIAVLDTGTGKTMIALMLIREIGQAVKADGRKLFIIFLAPTVHLV 106
Query: 167 MQQIEACHNIVGIPQEWTIDMTG----QISPTKRASFWKTKR---------VFFVTPQVL 213
Q AC + + D TG + K W K V +TPQ+L
Sbjct: 107 NQ---ACFFFIFSQFKVIKDSTGFEVEEYYGAKGVDEWSAKSWEKEISEHDVLVMTPQIL 163
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV-QLRILALTATP 267
++ ++ + +++DE HRATGN+ Y ++E V + +I +TA+P
Sbjct: 164 LDALRKAFLSLETVCLMIVDECHRATGNHPYTKIMKEFYHKSVDKPKIFGMTASP 218
>gi|397485572|ref|XP_003813917.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 2 [Pan
paniscus]
Length = 578
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F + + SR IIF+ R S ++ L L ++A
Sbjct: 336 THGPENPKLEMLEKILQRQFSSSNS--SRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 393
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V++KF+ G N++VATS+ EEGLDI ++V+ +
Sbjct: 394 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 453
Query: 552 SPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 454 NEISMVQARGR 464
>gi|197246579|gb|AAI68680.1| Ifih1 protein [Rattus norvegicus]
Length = 775
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMN------ALATIGDLVKATE 493
++ KL K+ +++ F T+ + SR IIF+ R S + A +G VKA
Sbjct: 447 ENEKLIKLRNTILEQF-TRSEESSRGIIFTKTRQSTYALSQWIMENEKFAEVG--VKAHH 503
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 504 LIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNE 563
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 564 IAMVQARGR 572
>gi|346318518|gb|EGX88121.1| RNase3 domain protein [Cordyceps militaris CM01]
Length = 1455
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 132/562 (23%), Positives = 210/562 (37%), Gaps = 110/562 (19%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK--------IVFAAPS 162
R+YQ + + A NT+V L TG GKTLIA +++ + + + F
Sbjct: 64 REYQNELFERAKKKNTIVVLDTGSGKTLIAIMLLRHVLEQELEDRSNGCHRKTAFFIVDK 123
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRA-SFW----KTKRVFFVTPQVLEKDI 217
L +QQ + + + P G + P ++ S W + T Q+L +
Sbjct: 124 VALCVQQYQVVKSNLPFP---ITKCYGDLQPIEQVQSHWDELFDKNMIVVCTAQMLLDCL 180
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM--SVPVQLRILALTATP-------- 267
G MK + L+ DE H A + Y ++ + + RIL LTA+P
Sbjct: 181 SHGFINMKQINLLIFDEVHHAKKEHPYAAIMKRYYPRNDDAKPRILGLTASPIDTGTLDM 240
Query: 268 -GSKQQTIQHIIDNLYISTLE------YRNESDQDVSSY-----VHNRKIELI------- 308
S QQ + + + E + E + V Y + N EL
Sbjct: 241 DASVQQLESLLCSEIATVSDEVLEAGWVKREQQEKVCFYQPPQPIQNAYTELTAMVADYA 300
Query: 309 -EVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPN 367
+ AV ++ V+ P+ + L+ + +T++ ++R F
Sbjct: 301 RHIPQLSSAVHCAAKMGSVLGPWCAHRFWQLLMTDNTMRTMTLQSARSNRVYFSYD---- 356
Query: 368 LPQIKFGEVEAYF---GALITLYHIRRLLSSHGIRPA-YEMLEEKLKQGSFARFMSKNED 423
++ V A F G L+ + + L + G + +L E L KN
Sbjct: 357 ----RYDAVSAAFESLGPLVNHHQLTTLPTDEGATSSKLTVLRETLCVA-----FEKNRA 407
Query: 424 IRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALA 483
+ + + +Q ++ VL D+F+ S G V D M L
Sbjct: 408 TKCLVFVDEQYVA------------LVLADYFQQPGTAPS---------GMVADFMIGL- 445
Query: 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDL 543
S A SQ+ Q L F+ G N + ATS+ EEGLDI DL
Sbjct: 446 --------------SRASAFSNVSQRQQIMKLNNFKFGDTNCLFATSVAEEGLDIPACDL 491
Query: 544 VICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKDDHAIT 603
VI FD VS ++ IQ GR RK +F + +E Q++SR + V D A++
Sbjct: 492 VIRFDMCVSAIQYIQSRGR-ARKASS----VF---ITMMEQDNNQHMSRFQNVNID-ALS 542
Query: 604 TPIFKEKLTAAETDLIAKYFHP 625
F + L A I KY P
Sbjct: 543 LRRFCQSLPADRK--IEKYERP 562
>gi|397485570|ref|XP_003813916.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 1 [Pan
paniscus]
Length = 678
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F + + SR IIF+ R S ++ L L ++A
Sbjct: 343 THGPENPKLEMLEKILQRQFSSSNS--SRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V++KF+ G N++VATS+ EEGLDI ++V+ +
Sbjct: 401 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460
Query: 552 SPLRMIQRMGRT 563
+ + M+Q GR
Sbjct: 461 NEISMVQARGRA 472
Score = 48.1 bits (113), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + WT+ ++G + P RA F R + T ++L+ + S
Sbjct: 63 HGEEFRRM--LDGRWTMTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS 269
+ +V+DE H + Y + + + + +Q ++L LTA+PG+
Sbjct: 119 HVELTAFSLIVVDECHHTHKDTIYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172
>gi|114667313|ref|XP_001167051.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 5 [Pan
troglodytes]
gi|410209926|gb|JAA02182.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Pan troglodytes]
gi|410259426|gb|JAA17679.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Pan troglodytes]
gi|410297276|gb|JAA27238.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Pan troglodytes]
gi|410330751|gb|JAA34322.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Pan troglodytes]
Length = 678
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F + + SR IIF+ R S ++ L L ++A
Sbjct: 343 THGPENPKLEMLEKILQRQFSSSNS--SRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V++KF+ G N++VATS+ EEGLDI ++V+ +
Sbjct: 401 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460
Query: 552 SPLRMIQRMGRT 563
+ + M+Q GR
Sbjct: 461 NEISMVQARGRA 472
Score = 48.5 bits (114), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + WT+ ++G + P RA F R + T ++L+ + S
Sbjct: 63 HGEEFRRM--LDGRWTMTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS 269
+ +V+DE H + Y + + + + +Q ++L LTA+PG+
Sbjct: 119 HVELTAFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172
>gi|62988819|gb|AAY24206.1| unknown [Homo sapiens]
Length = 589
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMN------ALATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + A +G VKA
Sbjct: 261 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 317
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 318 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 377
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 378 IAMVQARGR 386
>gi|170099920|ref|XP_001881178.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643857|gb|EDR08108.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1469
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 29/223 (13%)
Query: 105 PVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164
P R YQ + + +L N ++AL TG GKTLIA + + + P F AP+
Sbjct: 8 PSTPATRGYQQEMLEESLRKNIIIALDTGSGKTLIAVLRLKHEIHREPTKVCWFFAPTVA 67
Query: 165 LVMQQIEACHNI----VGIPQEWTIDMTGQISP--TKRASFW----KTKRVFFVTPQVLE 214
L QQ VG+ ++G + P + A+ W +T RV TPQV
Sbjct: 68 LCEQQKSVIQTYLPVSVGL-------ISGSLEPDQWRNAALWEKVIRTHRVMVSTPQVFL 120
Query: 215 KDIQSGTCLMKYLVC-LVIDEAHRATGNYAYCTAIREL-MSVPVQ----LR--ILALTAT 266
++ G ++ +C LV DEAH A N+ Y ++E +P+Q +R +L LTA+
Sbjct: 121 DALRHGYLVLGRDICLLVFDEAHHAVDNHPYNRIMQEFYFDLPIQGSDFVRPAVLGLTAS 180
Query: 267 P---GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIE 306
P G+ + Q I NL ST+ +++ +V+ K +
Sbjct: 181 PIYGGNVVKAFQTIEANL-DSTIRAPRRHRAELAQFVYKPKFK 222
>gi|355695573|gb|AES00054.1| interferon induced with helicase C domain 1 [Mustela putorius furo]
Length = 1020
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 692 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENKKFAEVG--VKAHH 748
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 749 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 808
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 809 IAMVQARGR 817
>gi|355564928|gb|EHH21417.1| hypothetical protein EGK_04479 [Macaca mulatta]
Length = 1025
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 697 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 753
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 754 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 813
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 814 IAMVQARGR 822
>gi|16551654|dbj|BAB71141.1| unnamed protein product [Homo sapiens]
Length = 468
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 140 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 196
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 197 LIGAGHSSEFKPMTQNEQKEVISKFRTGRINLLIATTVAEEGLDIKECNIVIRYGLVTNE 256
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 257 IAMVQARGR 265
>gi|114052719|ref|NP_001040588.1| interferon-induced helicase C domain-containing protein 1 [Macaca
mulatta]
gi|113201795|gb|ABI33114.1| melanoma differentiation associated protein-5 [Macaca mulatta]
gi|355750574|gb|EHH54901.1| hypothetical protein EGM_04004 [Macaca fascicularis]
gi|383412295|gb|AFH29361.1| interferon-induced helicase C domain-containing protein 1 [Macaca
mulatta]
gi|387540852|gb|AFJ71053.1| interferon-induced helicase C domain-containing protein 1 [Macaca
mulatta]
Length = 1025
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 697 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 753
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 754 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 813
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 814 IAMVQARGR 822
>gi|426337537|ref|XP_004032759.1| PREDICTED: interferon-induced helicase C domain-containing protein
1 [Gorilla gorilla gorilla]
Length = 1025
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 697 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 753
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 754 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 813
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 814 IAMVQARGR 822
>gi|84627487|gb|AAI11751.1| Interferon induced with helicase C domain 1 [Homo sapiens]
gi|119631757|gb|EAX11352.1| interferon induced with helicase C domain 1 [Homo sapiens]
Length = 1025
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 697 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 753
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 754 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 813
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 814 IAMVQARGR 822
>gi|397500570|ref|XP_003820983.1| PREDICTED: interferon-induced helicase C domain-containing protein
1 [Pan paniscus]
Length = 1025
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 697 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 753
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 754 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 813
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 814 IAMVQARGR 822
>gi|297668722|ref|XP_002812573.1| PREDICTED: LOW QUALITY PROTEIN: interferon-induced helicase C
domain-containing protein 1 [Pongo abelii]
Length = 1025
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 697 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 753
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 754 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 813
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 814 IAMVQARGR 822
>gi|410220348|gb|JAA07393.1| interferon induced with helicase C domain 1 [Pan troglodytes]
Length = 1025
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 697 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 753
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 754 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 813
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 814 IAMVQARGR 822
>gi|393220706|gb|EJD06192.1| hypothetical protein FOMMEDRAFT_145449 [Fomitiporia mediterranea
MF3/22]
Length = 1473
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 118/499 (23%), Positives = 197/499 (39%), Gaps = 71/499 (14%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF------PDGKIVFAAPSRP 164
R YQ I + A N + AL TG GKT IAA++I +W K VF P P
Sbjct: 13 RAYQEEIFEQAQNGNVIAALDTGSGKTFIAALLI----KWVMSQPSQAGKKTVFLVPKVP 68
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV----FFVTPQVLEKDIQSG 220
LV QQ + + + G + K W+ + + +T Q+ + + G
Sbjct: 69 LVDQQRDVLSKQTPLIVRGYVGAMGVDAWDK--GRWELEFLQSDCLVMTAQIFKNILVHG 126
Query: 221 TCLMKYLVCLVIDEAHRATGNYAY-CTAIRELMSVPVQLRILALTATPGSKQ-------Q 272
+ + L+ DE H A + Y + S + +I +TA+P + +
Sbjct: 127 YWSLDQVALLIFDECHHARKYHPYNAIMVDHYRSSEWKPKIFGMTASPIWNREKPLESIE 186
Query: 273 TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332
T+Q+ + + I+ ++ + DQ V NR IELI V N E Y
Sbjct: 187 TLQNNLCSKVIAVRQHMDLLDQHV-----NRPIELI--------VRYQNPSDEHYDTYYK 233
Query: 333 RLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392
++ + D Q +SP+ L RD + ++ V L H
Sbjct: 234 --PSLWDYLHSDEQVISPI--LAIRDAEVRY------KVTLNAVGPAGADYFLLKHAIHA 283
Query: 393 LSSHGIRPAY-EMLEEKLKQGSFARFM----SKNED---------IRKVKL-LMQQSISH 437
+ + +R E+ K+ SF +N+D +R L ++ +S
Sbjct: 284 VEEYELRAMMPEISSRSRKKASFTSDTISDSGRNDDNELAIGLEKLRSAVLSFRRRLLSD 343
Query: 438 GAQSPK--LSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD---LVKAT 492
G P LS L VD + + IIF N R + + L + + ++
Sbjct: 344 GRTLPPEWLSPKLRAAVDILVKHRSESFQGIIFVNQRQVAKALSWILGRVLETKTWLRCG 403
Query: 493 EFIGQSSGKASKGQSQ----KVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD 548
E IG S + K Q+ +++ FR+G N+++AT +GEEGLD LVI +D
Sbjct: 404 ELIGHGESSKSSSSGKGMDIKRQRDIVQSFRSGNLNLLIATDVGEEGLDFPACALVIRYD 463
Query: 549 ANVSPLRMIQRMGRTGRKH 567
+ + +Q GR +++
Sbjct: 464 SVKHMVGYVQSRGRARQQN 482
>gi|27886568|ref|NP_071451.2| interferon-induced helicase C domain-containing protein 1 [Homo
sapiens]
gi|134047802|sp|Q9BYX4.3|IFIH1_HUMAN RecName: Full=Interferon-induced helicase C domain-containing
protein 1; AltName: Full=Clinically amyopathic
dermatomyositis autoantigen 140 kDa; Short=CADM-140
autoantigen; AltName: Full=Helicase with 2 CARD domains;
Short=Helicard; AltName: Full=Interferon-induced with
helicase C domain protein 1; AltName: Full=Melanoma
differentiation-associated protein 5; Short=MDA-5;
AltName: Full=Murabutide down-regulated protein;
AltName: Full=RIG-I-like receptor 2; Short=RLR-2;
AltName: Full=RNA helicase-DEAD box protein 116
Length = 1025
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 697 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 753
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 754 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 813
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 814 IAMVQARGR 822
>gi|410968747|ref|XP_003990861.1| PREDICTED: interferon-induced helicase C domain-containing protein
1 [Felis catus]
Length = 1018
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMN------ALATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + A +G VKA
Sbjct: 689 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENKKFAEVG--VKAHH 745
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 746 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 805
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 806 IAMVQARGR 814
Score = 41.6 bits (96), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 77/191 (40%), Gaps = 38/191 (19%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPSRP 164
+R YQ + + AL N ++ LPTG GKT +A + + + GK++ P
Sbjct: 300 LRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVP 359
Query: 165 LVMQQIEACHNIVGIPQEW--TIDMTGQISPTKRASF---WKTKRVFFVTPQVLEKDI-- 217
LV Q ++W TI ++G + SF KT V T Q+LE +
Sbjct: 360 LVEQLFR--KEFEPFLKKWYHTIGLSGDTQL--KISFPEVVKTYDVIISTAQILENSLLN 415
Query: 218 -----QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS---------------VPVQ 257
G L + + +VIDE H Y +R + +P+
Sbjct: 416 SEIGEDDGVQLSDFSL-IVIDECHHTNKEAVYNNIMRRYLKQKLKNNKLKKECKPVIPLP 474
Query: 258 LRILALTATPG 268
+IL LTA+PG
Sbjct: 475 -QILGLTASPG 484
>gi|11344594|gb|AAG34368.1|AF095844_1 melanoma differentiation associated protein-5 [Homo sapiens]
Length = 1025
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 697 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 753
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 754 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 813
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 814 IAMVQARGR 822
>gi|426238043|ref|XP_004012967.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 [Ovis aries]
Length = 680
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 9/132 (6%)
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM------NALATIGDLVKA 491
G ++PKL + +L F++ P R IIF+ R S ++ L T+G +
Sbjct: 345 GPENPKLEVLEAILQKQFRS--PDSPRGIIFTRTRQSAHSLLLWLQQQPGLQTVGIRPQV 402
Query: 492 TEFIGQSSGKASKGQ-SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
G +S K Q +Q+ QQ V++KFR G N++VATS+ EEGLDI + ++V+ +
Sbjct: 403 LIGAGNNSQKTQMIQMTQRDQQEVIQKFRTGTLNLLVATSVAEEGLDIPQCNVVVRYGLL 462
Query: 551 VSPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 463 TNEISMVQARGR 474
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + + WTI ++G + P RA F R + T ++L+K + S
Sbjct: 63 HYEEFSRM--LDRRWTITTLSGDMGP--RAGFGHMARRHDLLICTAELLQKALASPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS-KQQTI 274
+ LV+DE H + Y + + + +Q ++L LTA+PG+ T+
Sbjct: 119 HVELNAFSLLVVDECHHTHKDTVYNIILSRYLELKLQRTRPLPQVLGLTASPGTGGASTL 178
Query: 275 QHIIDNL 281
+ ID++
Sbjct: 179 KGAIDHV 185
>gi|330370549|gb|AEC12444.1| ribonuclease III family protein DCL3 [Gossypium hirsutum]
Length = 1655
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 38/214 (17%)
Query: 113 YQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK----IVFAAPSRPLVMQ 168
YQ + + A N + L TG+GKT+IA ++I +F + + I+F AP+ LV Q
Sbjct: 48 YQLQVYEVAKRRNIIALLDTGVGKTMIAVMLIKDFGQAIESTESKKLIIFLAPTVHLVNQ 107
Query: 169 -----------QIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
++E + G+ EWT+D + + K V +TPQ+L +
Sbjct: 108 VCFLIRESLNLEVEQYYGAKGV-DEWTLDCWEKET--------KEHDVLVMTPQILLDAL 158
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP-VQLRILALTATP--------- 267
+ + + ++IDE HRATGN+ Y ++E + +I +TA+P
Sbjct: 159 RKAFLSLDMVSLMIIDECHRATGNHPYAKIMKEFYHKSNNKPKIFGMTASPVVSKGVLSS 218
Query: 268 ---GSKQQTIQHIIDNLYISTLEYRNESDQDVSS 298
+ ++ ++D+L I T+E R E + V S
Sbjct: 219 NNCDGQMSELECVLDSL-IYTIEDRTEMEACVPS 251
>gi|332234337|ref|XP_003266368.1| PREDICTED: interferon-induced helicase C domain-containing protein
1 [Nomascus leucogenys]
Length = 976
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 648 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 704
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 705 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 764
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 765 IAMVQARGR 773
>gi|158259343|dbj|BAF85630.1| unnamed protein product [Homo sapiens]
Length = 1025
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 697 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 753
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 754 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 813
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 814 IAMVQARGR 822
>gi|403258897|ref|XP_003921978.1| PREDICTED: interferon-induced helicase C domain-containing protein
1 [Saimiri boliviensis boliviensis]
Length = 1025
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 697 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 753
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 754 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNVVIRYGLVTNE 813
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 814 IAMVQARGR 822
>gi|332814684|ref|XP_003309348.1| PREDICTED: interferon-induced helicase C domain-containing protein
1 [Pan troglodytes]
Length = 1024
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 696 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 752
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 753 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 812
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 813 IAMVQARGR 821
>gi|402888490|ref|XP_003907593.1| PREDICTED: interferon-induced helicase C domain-containing protein
1-like [Papio anubis]
Length = 837
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 509 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 565
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 566 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 625
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 626 IAMVQARGR 634
>gi|431894856|gb|ELK04649.1| Interferon-induced helicase C domain-containing protein 1 [Pteropus
alecto]
Length = 932
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 603 ENEKLTKLRNTIMEQY-TRTAEAARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 659
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E +++I + +
Sbjct: 660 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIIIRYGLVTNE 719
Query: 554 LRMIQRMGR 562
+ MIQ GR
Sbjct: 720 IAMIQARGR 728
Score = 43.5 bits (101), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 44/194 (22%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPSRP 164
+R YQ + + AL N ++ LPTG GKT +A + + R GK++ P
Sbjct: 307 LRPYQMEVAQPALEGKNVIICLPTGSGKTRVAVKIAKDHLDKKKRASEPGKVIVLVNKVP 366
Query: 165 LVMQQ--------IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKD 216
LV Q ++ +N++G+ + D +IS K K+ V T Q+LE
Sbjct: 367 LVEQLFRKEFQPFLKKWYNVMGL----SGDTQLKISFPKVV---KSHDVIISTAQILENS 419
Query: 217 I-------QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS---------------V 254
+ G L + + +VIDE H Y +R + +
Sbjct: 420 LLNSEKGEDDGVQLSDFSL-IVIDECHHTNKEAVYNNIMRRYLKQKLRNNKLKKENKPVI 478
Query: 255 PVQLRILALTATPG 268
P+ +IL LTA+PG
Sbjct: 479 PLP-QILGLTASPG 491
>gi|12621066|gb|AAG54076.1| RNA helicase-DEAD box protein RH116 [Homo sapiens]
Length = 1025
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 697 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 753
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 754 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 813
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 814 IAMVQARGR 822
>gi|73965821|ref|XP_860532.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 3
[Canis lupus familiaris]
Length = 678
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 6/128 (4%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKATEFI 495
++PKL + ++L + F D R IIF+ R S ++ L L ++A I
Sbjct: 347 ENPKLEMLEQILREQFGHSDS--PRGIIFTQTRQSTHSLLLWLQQQPGLQTVDIRADLLI 404
Query: 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
G + + +Q+ QQ V+ KFR G N++VATS+ EEGLDI + ++V+ + + +
Sbjct: 405 GAGNSSQNTHMTQRDQQEVIRKFRVGTLNLLVATSVAEEGLDIPQCNVVVRYGLLSNEIS 464
Query: 556 MIQRMGRT 563
M+Q GR
Sbjct: 465 MVQARGRA 472
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N +V LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIVWLPTGAGKTRAAAYVAKRHLETVDQAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWT-IDMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E ++G + W I ++G + P RA F R + T ++L+ + S
Sbjct: 63 HCEEFSRMLG--KRWAIITLSGDMGP--RAGFGHLARSHDLIICTAELLQMALTSPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS 269
+ LV+DE H + Y + + +Q ++L LTA+PG+
Sbjct: 119 HVELNAFSLLVVDECHHTHKDTVYNLILSRYLEHKLQRTRPLPQVLGLTASPGT 172
>gi|74004732|ref|XP_545493.2| PREDICTED: interferon-induced helicase C domain-containing protein
1 [Canis lupus familiaris]
Length = 1029
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 16/137 (11%)
Query: 439 AQSPK-----LSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIG 486
AQ+PK L K+ +++ F +T++P +R IIF+ R S + + A +G
Sbjct: 694 AQNPKHENEKLIKLRNTIMEQFTRTEEP--ARGIIFTKTRQSAFALSQWITENKKFAEVG 751
Query: 487 DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
VKA IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI
Sbjct: 752 --VKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIR 809
Query: 547 FDANVSPLRMIQRMGRT 563
+ + + M+Q GR
Sbjct: 810 YGLVTNEIAMVQARGRA 826
Score = 42.0 bits (97), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 83/216 (38%), Gaps = 44/216 (20%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPSRP 164
+R YQ + + AL N ++ LPTG GKT +A + + + GK++ P
Sbjct: 309 LRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVP 368
Query: 165 LVMQQIEACHNIVGIPQEW--TIDMTGQISPTKRASF---WKTKRVFFVTPQVLEKDI-- 217
LV Q ++W TI ++G + SF KT V T Q+LE +
Sbjct: 369 LVEQLFR--EEFEPFLKKWYHTIGLSGDTQL--KISFPEIVKTYDVIISTAQILENSLLN 424
Query: 218 ----QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS---------------VPVQL 258
+ ++IDE H Y +R + +P+
Sbjct: 425 SEKGEDDGVQFSDFTLIIIDECHHTNKEAVYNNIMRRYLKQKLKNNKLKKEYKPVIPLP- 483
Query: 259 RILALTATPGSK--------QQTIQHIIDNLYISTL 286
+IL LTA+PG + QQ I I NL T+
Sbjct: 484 QILGLTASPGVRGAKRQAEAQQHILKICANLDACTI 519
>gi|189908862|gb|ACE60552.1| dicer-like protein 2 [Brassica rapa]
Length = 1392
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 21/173 (12%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNF---FRWFPDGKIVFAAPSRPLVM 167
R YQ + A+ NT+V L TG GKTLIA +++ ++ FR VF P LV
Sbjct: 24 RSYQVEALEKAMKRNTIVYLETGSGKTLIAIMLLRSYAYLFRKPSPCFSVFLVPQVVLVT 83
Query: 168 QQIEAC--HNIVGIPQEW-TIDMTGQISPTKRASFWK----TKRVFFVTPQVLEKDIQSG 220
QQ EA H + + W ++ + +PT WK T V +TP +L ++
Sbjct: 84 QQAEALKRHTDLKVGMYWGSMGVDFWDAPT-----WKQEVDTYEVLVMTPAILLSALRHS 138
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELM------SVPVQLRILALTATP 267
+ + L+ DE H A GN+AY ++E + + RI +TA+P
Sbjct: 139 FLSLNMIKVLIFDECHHARGNHAYACILKEFYHKELKSATSLVPRIFGMTASP 191
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
G +SG S Q++K Q +E FR G N+IV+TSI EEGLD+ +LV+ FD +
Sbjct: 423 GNNSGLQS--QTRKKQNETVEDFRKGLVNIIVSTSILEEGLDVQSCNLVVGFDPASNICS 480
Query: 556 MIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKDD 599
IQ GR + + + + +++ + + Y+S GK++++D
Sbjct: 481 FIQSQGRARMPNSDYLMMVERGDME-TKSRLMTYISGGKRMRED 523
>gi|440690962|pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
gi|440690963|pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 379 ENEKLTKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 435
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 436 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 495
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 496 IAMVQARGR 504
>gi|168027292|ref|XP_001766164.1| dsRNA-specific nuclease dicer and related ribonuclease
[Physcomitrella patens subsp. patens]
gi|162682596|gb|EDQ69013.1| dsRNA-specific nuclease dicer and related ribonuclease
[Physcomitrella patens subsp. patens]
Length = 1460
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 84/173 (48%), Gaps = 18/173 (10%)
Query: 113 YQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF---RWFPDGK-IVFAAPSRPLVMQ 168
YQ + AL NT++ L TG GKTL+A ++I + R D + IVF AP+ LV Q
Sbjct: 4 YQQQAFEAALNKNTILYLETGCGKTLVAVLLIKSLAKNTRLENDKRLIVFLAPTVILVQQ 63
Query: 169 QIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQSGTC 222
Q H + + + + + + RA W+T+ V +TPQV ++Q G
Sbjct: 64 QARVIRIHTDLNVGEYYG---SKNVDTWSRAE-WQTQIAEVEVMVMTPQVFLNNLQHGFL 119
Query: 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL----RILALTATPGSKQ 271
M + L+ DE H A N+AY ++ V V RI +TA+P +K+
Sbjct: 120 KMNIVELLIFDECHHAHKNHAYAQIMKGFYHVNVDKGRLPRIFGMTASPVTKK 172
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 9/144 (6%)
Query: 425 RKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS---VRDIMNA 481
R VK +Q ++S G +PK+ ++ VL KD K IIF R + + ++N
Sbjct: 337 RLVKKELQDAVSKGYLTPKVYHLIGVLFHKRSMKDVKR---IIFVERRMAAVVLAYLVND 393
Query: 482 LATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
L + + ++ G S G + +++ QQ + F G N++VAT + EEG+D+
Sbjct: 394 LQCLRENFRSESICGASIGPHT---TRREQQCTMTAFNKGEINLLVATELAEEGIDVKNC 450
Query: 542 DLVICFDANVSPLRMIQRMGRTGR 565
VI F+ + IQ GR R
Sbjct: 451 GEVIRFNLPKTLRSNIQSRGRARR 474
>gi|296204692|ref|XP_002749435.1| PREDICTED: interferon-induced helicase C domain-containing protein
1 [Callithrix jacchus]
Length = 1025
Score = 67.0 bits (162), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ +R IIF+ R S + + A +G VKA
Sbjct: 697 ENEKLAKLRNTIMEQY-TRTEGSARGIIFTKTRQSAYALSQWITENEKFAQVG--VKAHH 753
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 754 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 813
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 814 IAMVQARGR 822
>gi|395844909|ref|XP_003795191.1| PREDICTED: interferon-induced helicase C domain-containing protein
1 [Otolemur garnettii]
Length = 1024
Score = 67.0 bits (162), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T + +R IIF+ R S + + A +G VKA
Sbjct: 696 ENQKLTKLRNTIMEQY-TSTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 752
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 753 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 812
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 813 IAMVQARGR 821
>gi|432098359|gb|ELK28159.1| Interferon-induced helicase C domain-containing protein 1 [Myotis
davidii]
Length = 952
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL+K+ +++ + T+ +R IIF+ R S + + A +G VKA
Sbjct: 623 ENEKLTKLRNTIMEQY-TRTAGSARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 679
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 680 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIEECNIVIRYGLVTNE 739
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 740 IAMVQARGR 748
>gi|291406113|ref|XP_002719437.1| PREDICTED: DEXH (Asp-Glu-X-His) box polypeptide 58-like
[Oryctolagus cuniculus]
Length = 678
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 10/129 (7%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM------NALATIGDLVKATE 493
++PKL + +L F++ P R IIF+ R S R ++ L T+ ++
Sbjct: 347 ENPKLEMLENILRTQFRS--PDSPRGIIFTRTRQSARSLLLWVQQQPGLQTVD--IRPQM 402
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG S S +Q+ Q+ V+ +FRAG N++VATS+ EEG+DI ++V+ + +
Sbjct: 403 LIGAGSSSQSTHMTQRDQEEVIRRFRAGMLNLLVATSVVEEGMDIPHCNVVVRYGLLTNE 462
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 463 ISMVQARGR 471
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V P K+V LV Q
Sbjct: 3 LRPYQWEVIVPALEGKNIIIWLPTGTGKTRAAAYVAKRHLETVPGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E + + WT+ + G + P RA F R + T ++L+ + S
Sbjct: 63 HSEEFGRM--LDGHWTMTTLRGDMGP--RAGFGHLARGHDLLICTAELLQMALTSTEEEE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS 269
+ LV+DE H + Y + + + V ++L LTA+PG+
Sbjct: 119 HVELTAFTLLVVDECHHTHKDTVYNVILSRYLELKVHRTQPLPQVLGLTASPGT 172
>gi|189199432|ref|XP_001936053.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983152|gb|EDU48640.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1439
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 120/510 (23%), Positives = 209/510 (40%), Gaps = 73/510 (14%)
Query: 92 VQIDAEAAKTWIYPV-NVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW 150
+ +D+ A + P +R YQ + + ++ +N +V + TG GKT IA
Sbjct: 5 MHVDSTATASGASPCETFQLRAYQAEMVEESMKANIIVVMDTGSGKTHIAIERTRAELET 64
Query: 151 F----PDGKIV-FAAPSRPLVMQQIEA-CHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204
P KIV F AP+ L QQ E N+ G + + FW T+R
Sbjct: 65 CQPDKPTWKIVWFLAPTVSLCEQQHEVFLSNLPGFGHQ-------ILCGRDDIEFWTTQR 117
Query: 205 ----------VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-- 252
+ T QVL + + G + L L+ DEAH T N+ +
Sbjct: 118 HWDSILTNVRIVVSTHQVLLEALTHGFVKLTKLALLIFDEAHHCTLNHPANQLMTNFYMP 177
Query: 253 -------SVPVQLRILALTATPGSK----QQTIQHIIDNLYISTLEYRNESDQDVSSYVH 301
S+P ++L LTA+P K +Q ++ I NL+ +T + ++ YVH
Sbjct: 178 QLHDNRNSLP---KVLGLTASPVMKAVATRQGLELIEQNLH-ATAKTPKLHRSELMRYVH 233
Query: 302 NRKIELIEVEM-----GQEAVEINNRIWEVIRPYTSRLS--AIGLL--QNRDYQTLSPVD 352
+ EL+++ G ++ + E Y + I LL ++ Y ++
Sbjct: 234 --QPELVQIAYPSSPAGTHYSQLLLALQEAYETYNLQRDPYVIALLDQHSKGYDVSRQLN 291
Query: 353 -LLNSRDKFRQAPPPNLPQIKFGEVEAY---FGALITLYHIRRLLSSHGIRPAYEMLEEK 408
L +SR + L Q+K + EA G + ++R+ +++ + +++
Sbjct: 292 KLWSSRKTYCY---DQLKQLK-NKAEAMADELGTSVMEGYLRQCIAT--FEKMAGIFDQQ 345
Query: 409 LKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTK---DPKHSRV 465
L S ++ L S+S G LS+ + +LVD + +P + +
Sbjct: 346 LLDLSTNERQHLLNVFKRFPLHNPSSVSDGILD-NLSQKVNILVDTLVAEAEGNPDFTGL 404
Query: 466 IIFSN--FRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQ-----SQKVQQAVLEKF 518
+ + S+ +I+ L++ F+G S K K QQ L+ F
Sbjct: 405 VFVEQRVWVASLAEILTCHPRTKHLLRVGTFVGTSQSSKRKSNISVFAEPKNQQTTLDDF 464
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFD 548
RAG N+++ATS+ EEG+D+ LVICF+
Sbjct: 465 RAGIINLVLATSVLEEGIDVSSCHLVICFE 494
>gi|281201329|gb|EFA75541.1| hypothetical protein PPL_11046 [Polysphondylium pallidum PN500]
Length = 1128
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 80/192 (41%), Gaps = 23/192 (11%)
Query: 95 DAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154
DAE T P R YQ K A+ N + +PTGLGKT IAA+VI P
Sbjct: 191 DAEIPATLHQP-----RKYQKYFYKKAMEDNIICCIPTGLGKTQIAAMVISKMKEMNPKK 245
Query: 155 KIVFAAPSRPLVMQQIEACH-----NIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVT 209
+I+F PLV+Q H N++G+ + +ID A V
Sbjct: 246 RILFLVERIPLVLQLENYIHDQTGLNVIGVHGDMSID----------AKLNDHHDVLVSI 295
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIR---ELMSVPVQLRILALTAT 266
++ +M +V DEAH + ++ ++ + M V+ +++ LTA+
Sbjct: 296 SSFFLNLLKFNKVVMGQYSLIVFDEAHHMVKDNSFSMLLKNHYKAMKEDVKPKVMGLTAS 355
Query: 267 PGSKQQTIQHII 278
PG K I I
Sbjct: 356 PGGKSSWIDTFI 367
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 490 KATEFIGQSSGKASK---GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546
KA F G+ SG S GQS K Q+ +EKFR+G YNVIVAT++ EEGLD+ + ++VI
Sbjct: 543 KAILFPGKVSGHGSTKSGGQSTKSQKDNVEKFRSGQYNVIVATAVLEEGLDVPKCNVVIR 602
Query: 547 FDA 549
D+
Sbjct: 603 IDS 605
>gi|390341546|ref|XP_797737.3| PREDICTED: probable ATP-dependent RNA helicase DDX58-like
[Strongylocentrotus purpuratus]
Length = 783
Score = 66.6 bits (161), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 126/543 (23%), Positives = 218/543 (40%), Gaps = 88/543 (16%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+ DYQ + K AL NT V PTG GKT +A V R P K++F V+
Sbjct: 85 LEDYQVELAKPALRGHNTCVVAPTGSGKTYVAVAVAQEVLRKSPGKKVIF-------VVN 137
Query: 169 QIEACHNIVGIPQEWTIDMT------GQ--ISPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
Q+ + + +++ D+ GQ I+ K V +T Q+L + G
Sbjct: 138 QVSLVYKRSTVFKKYINDVAYICGDHGQPEITRLPLDEVLKKNDVVVLTAQILVDALTKG 197
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR-----ILALTATPG-----SK 270
+ +++DE H Y + + M + + IL +TA+ G S
Sbjct: 198 QVSFNQIGLIILDECHETKKESQYNAIMAKYMEQKLTNKEPLPQILGMTASLGVGNARSD 257
Query: 271 QQTIQHII------DNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQE----AVEIN 320
+ IQ+++ D + +ST++ ES + V N E + V + A EI
Sbjct: 258 KNAIQYMLKMCANMDVVKLSTVQKHKESLEKVV----NEPDEGLHVVTSRTEDSFAEEIQ 313
Query: 321 NRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLN-SRDKFRQAPPPNLPQI--KFGEVE 377
+ +++V + S + L N + LS + N SR+ F +I F +
Sbjct: 314 DLMYQVFKYINSSTGSSVL--NTTVEKLSSLRSSNHSRENFSHVLCTLKKEIIENFQSSD 371
Query: 378 AYFGALITLYHIRRLLSSHGI------RPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLM 431
+ +++ S+ I + A E L+E +++ S S E K+L+
Sbjct: 372 LQLSLMTCAQYLKEYSSALAIHETARTKDALEYLQEFIREKSNKAATSNTE-----KMLI 426
Query: 432 ------QQSISHGAQSPK---------LSKMLEVLVDHFKTKDPKHS-RVIIFSNFRGSV 475
QQ + + SPK L ++E + +T++ R I+F+ S
Sbjct: 427 RTFQDKQQELERISMSPKSPNNPALDELQSLIEGDIVTCQTQENNGPFRAILFTQTIAST 486
Query: 476 RDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEG 535
+ N + L + G + G + + Q+ VL+ FR G + +++ATS ++G
Sbjct: 487 WALKNWVMETDSLKDLHPEV--LVGCRNPGMNLRHQKDVLDNFRDGVHKLLIATSAMQQG 544
Query: 536 LDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKK 595
+DI + V ++ + IQ GRT RK GR +L + Y RG
Sbjct: 545 IDIPACNFVYRYNYITDAVARIQARGRT-RKPGGRF-----------DLVVHGY--RGLD 590
Query: 596 VKD 598
VKD
Sbjct: 591 VKD 593
>gi|422349727|ref|ZP_16430616.1| hypothetical protein HMPREF9465_01506 [Sutterella wadsworthensis
2_1_59BFAA]
gi|404657936|gb|EKB30816.1| hypothetical protein HMPREF9465_01506 [Sutterella wadsworthensis
2_1_59BFAA]
Length = 483
Score = 66.6 bits (161), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 449 EVLVDHFKTKDPKHS---RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKG 505
+VL+D KT+ P++ +VI+F +NA T L + E +G ++
Sbjct: 238 DVLIDILKTRGPENKPLEQVIVF----------VNAKITCRRLARTLERVGINADAIHGD 287
Query: 506 QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
++Q+ +QA L+ F++G +V+VAT + GLDI E+ VI +D S + R+GRTGR
Sbjct: 288 KTQEERQAALDGFKSGAIHVLVATDVAARGLDIKELPCVINYDVPFSAEDYVHRIGRTGR 347
>gi|158706443|sp|Q0CEI2.2|DCL2_ASPTN RecName: Full=Dicer-like protein 2; Includes: RecName:
Full=Endoribonuclease dcl2; Includes: RecName:
Full=ATP-dependent helicase dcl2
Length = 1377
Score = 66.6 bits (161), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 12/134 (8%)
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT---IGDLVKATEFIGQ 497
SPKL E L+ + D +IF+ R +V + L+ D + F+G
Sbjct: 365 SPKL----EALISFLSSTDDSTFSGLIFAKQRATVTVLATLLSVHPLTKDRFRCAAFVGW 420
Query: 498 SSGKASK---GQ--SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
S G K G+ S ++Q+ L +FR+G N+IVAT + EEG+DI +VIC+D +
Sbjct: 421 SGGGNRKDLIGELLSMQMQRDTLSEFRSGQKNLIVATDVLEEGIDISACSVVICYDKPAN 480
Query: 553 PLRMIQRMGRTGRK 566
+QR GR RK
Sbjct: 481 VKSFVQRRGRARRK 494
Score = 47.0 bits (110), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 26/176 (14%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW-FPDGKIVFAAPSRPLVMQQ 169
R+YQ + + +L N +VA+ TG GKT +A + I N P I F AP+ L QQ
Sbjct: 17 RNYQTEMFEASLQENIIVAMDTGSGKTHVALLRIMNELETRRPQKLIWFLAPTVALCFQQ 76
Query: 170 IEACHNIV--GIPQEWTIDMTGQ--ISPTKRASFW----KTKRVFFVTPQVLEKDIQSGT 221
H+++ +P + +TGQ + + W K +V T VL + +G
Sbjct: 77 ----HDVITKNLPAVKSRTLTGQDKVELWTEQAIWDAILKDMQVVVSTHAVLADAMSNGF 132
Query: 222 CLMKYLVCLVIDEAH---------RATGNYAYCTAIRELM-SVPVQLRILALTATP 267
+ L L+ DEAH R ++ + T +++ +VP IL LTA+P
Sbjct: 133 VRVSQLGLLIFDEAHHCMRRHPANRIMQDFYHPTLVKQGPDAVP---GILGLTASP 185
>gi|257064977|ref|YP_003144649.1| DNA/RNA helicase [Slackia heliotrinireducens DSM 20476]
gi|256792630|gb|ACV23300.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM
20476]
Length = 657
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 11/129 (8%)
Query: 464 RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGY 523
RVI+F+ +G + L IG IG + A + Q+Q+ Q LE+FR G
Sbjct: 249 RVIVFTKTKGGADNCTRRLCKIG--------IGAEAIHADRSQAQR--QRALERFREGKT 298
Query: 524 NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFV 582
+VIVAT + G+D+ EVD V+ +D + P + R+GRTGR G P+ + +
Sbjct: 299 HVIVATDVLARGIDVPEVDYVVNYDLPMMPEDYVHRIGRTGRAGVAGYAVSFVTPDTKNL 358
Query: 583 ELSIEQYVS 591
SI++++
Sbjct: 359 LRSIQKFIG 367
>gi|405958476|gb|EKC24603.1| Putative ATP-dependent RNA helicase DDX58 [Crassostrea gigas]
Length = 1198
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 7/133 (5%)
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQS 498
+PKL ++ +++ F + SR IIF R V+ I + DL +K F G +
Sbjct: 866 NPKLMELRRLILQAFG--NDADSRGIIFVRTRDLVKAIHRWMMETDDLRHLKPVMFTG-A 922
Query: 499 SGKASKGQSQKVQQA-VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
K+S G KVQQ L F+ G + +++ATS+ EEGLDI + +LVI + + + M+
Sbjct: 923 QAKSSAGGMTKVQQIDALSLFKEGRHKIVIATSVAEEGLDIQKCNLVIRYSYVSNEIAMV 982
Query: 558 QRMGRTGRKHDGR 570
Q GR GR+ +G+
Sbjct: 983 QARGR-GRRENGK 994
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 13/175 (7%)
Query: 105 PVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNF---FRWFPDGKIVFAA 160
P+N+ R YQ + + AL N ++ PTG GKT +A +I N R K+ F
Sbjct: 501 PLNL--RSYQMELAQAALQDKNCIIVAPTGSGKTHVAMKIIQNHREKRRRLNIPKVAFLV 558
Query: 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR-VFFVTPQVLEKDIQS 219
L QQ + C +G + + + S W K+ V +T Q+L + +
Sbjct: 559 EQSALAEQQGKVCKEYLGCKVKVITGEKQRTESLQSLSCWIQKKDVLVITAQILVNALAT 618
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV-----QL-RILALTATPG 268
G ++ +V DE H + + Y + + + + QL +I+ LTA+ G
Sbjct: 619 GDIQIEAFSLIVFDECHHSHAKHPYNQIMAYYLDLKLEDKHKQLPQIVGLTASVG 673
>gi|358383044|gb|EHK20713.1| hypothetical protein TRIVIDRAFT_171147, partial [Trichoderma virens
Gv29-8]
Length = 1373
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 12/153 (7%)
Query: 424 IRKVKLLMQQSISHGAQ--SPKLSK----MLEVLVDHFKTKDPKHSRVIIFSNFRGSVRD 477
I KVK +++ + Q SP+LS + EVL D F + K R I+F R +
Sbjct: 250 IAKVKGIIRDHVFGPIQAGSPELSSKVKTLYEVLEDAFCKRQAK--RCIVFVEARSTAFL 307
Query: 478 IMNALATIGDLV---KATEFIGQSSGKASKG-QSQKVQQAVLEKFRAGGYNVIVATSIGE 533
+ + G + KA IG + AS S + Q L+KFR G N + ATS+ E
Sbjct: 308 LADLFQQPGMEIPGMKAAYMIGSHTSTASAAYMSYRDQIMSLQKFRYGETNCLFATSVAE 367
Query: 534 EGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
EG+DI E D++I FD S ++ IQ GR +K
Sbjct: 368 EGIDIPECDVIIRFDLYTSAIQYIQSKGRARQK 400
>gi|301778989|ref|XP_002924913.1| PREDICTED: interferon-induced helicase C domain-containing protein
1-like [Ailuropoda melanoleuca]
gi|281343300|gb|EFB18884.1| hypothetical protein PANDA_014321 [Ailuropoda melanoleuca]
Length = 1019
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 690 ENEKLIKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENKKFAEVG--VKAHH 746
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 747 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 806
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 807 IAMVQARGR 815
Score = 40.0 bits (92), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 76/191 (39%), Gaps = 38/191 (19%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPSRP 164
+R YQ + + AL N ++ LPTG GKT +A + + + GK++ P
Sbjct: 301 LRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVP 360
Query: 165 LVMQQIEACHNIVGIPQEW--TIDMTGQISPTKRASF---WKTKRVFFVTPQVLEKDI-- 217
LV Q ++W TI ++G + SF KT V T Q+LE +
Sbjct: 361 LVEQLFRK--EFEPFLKKWYHTIGLSGDTQL--KISFPEVVKTYDVIISTAQILENSLLN 416
Query: 218 -----QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS---------------VPVQ 257
G + + +VIDE H Y +R + +P+
Sbjct: 417 SEKGEDDGVQFSDFSL-IVIDECHHTNKEAVYNNIMRRYLKQKLKNNKLKKECKPVIPLP 475
Query: 258 LRILALTATPG 268
+IL LTA+PG
Sbjct: 476 -QILGLTASPG 485
>gi|119581203|gb|EAW60799.1| likely ortholog of mouse D11lgp2, isoform CRA_c [Homo sapiens]
Length = 379
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F + + R IIF+ R S ++ L L ++A
Sbjct: 198 THGPENPKLEMLEKILQRQFSSSNS--PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 255
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V++KF+ G N++VATS+ EEGLDI ++V+ +
Sbjct: 256 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 315
Query: 552 SPLRMIQRMGRT 563
+ + M+Q GR
Sbjct: 316 NEISMVQARGRA 327
>gi|194374847|dbj|BAG62538.1| unnamed protein product [Homo sapiens]
Length = 661
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F + + R IIF+ R S ++ L L ++A
Sbjct: 326 THGPENPKLEMLEKILQRQFSSSNS--PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 383
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V++KF+ G N++VATS+ EEGLDI ++V+ +
Sbjct: 384 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 443
Query: 552 SPLRMIQRMGRT 563
+ + M+Q GR
Sbjct: 444 NEISMVQARGRA 455
>gi|426348251|ref|XP_004041751.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 [Gorilla
gorilla gorilla]
Length = 678
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F + + R IIF+ R S ++ L L ++A
Sbjct: 343 THGPENPKLEMLEKILQRQFSSSNS--PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V++KF+ G N++VATS+ EEGLDI ++V+ +
Sbjct: 401 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460
Query: 552 SPLRMIQRMGRT 563
+ + M+Q GR
Sbjct: 461 NEISMVQARGRA 472
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + WT+ ++G + P RA F R + T ++L+ + S
Sbjct: 63 HGEEFRRV--LDGRWTMTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS 269
+ +V+DE H + Y + + + + +Q ++L LTA+PG+
Sbjct: 119 HVELTAFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172
>gi|407923675|gb|EKG16741.1| Ribonuclease III [Macrophomina phaseolina MS6]
Length = 1533
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 445 SKMLEV---LVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD-LVKATEFIGQSSG 500
SK+LE+ L+ +F+ + +SR I+F R + R + A+IG +K+ IG SS
Sbjct: 415 SKVLELHTWLLRYFERQ--TNSRCIVFVQRRHTARILHQVFASIGGPYLKSGMIIGNSSR 472
Query: 501 KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
+ S + Q L +F+ G N + ATS+ EEGLDI ++VI FD + ++ +Q
Sbjct: 473 ASGLNISFREQVMTLLRFKKGELNCLFATSVAEEGLDIPNCNIVIRFDLYKTMIQYVQSR 532
Query: 561 GRTGRKHDGRIPHI 574
GR R + R H+
Sbjct: 533 GR-ARHKNSRYLHM 545
Score = 40.0 bits (92), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 21/164 (12%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R+YQ + + A N + L TG GKTLIA +++ + + + + P ++
Sbjct: 110 REYQLELFERAKQENVIAVLDTGSGKTLIAVLLLKHVIEKELEDRALGKTPRISFFLKVE 169
Query: 171 EACHNI---VGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYL 227
C + + Q W A + V T +VL + + M+ +
Sbjct: 170 RFCGAMQCDLWSKQTW-------------AKHFIQNMVIVCTAEVLAQCLMHSFINMEQI 216
Query: 228 VCLVIDEAHRATGNYAYCTAIRELMSVPVQ----LRILALTATP 267
LV DEAH A ++Y I + +P + ++ +TA+P
Sbjct: 217 NLLVFDEAHHAKKGHSYAKIISDYY-IPTEDSKRPKVFGMTASP 259
>gi|268567267|ref|XP_002639934.1| C. briggsae CBR-DRH-3 protein [Caenorhabditis briggsae]
Length = 846
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 75/146 (51%), Gaps = 18/146 (12%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIF----------SNFRGSVRDIMNALATI 485
S + P + K+ + L+ F T SRVIIF S+F ++M L++
Sbjct: 438 SENVEPPIVQKLKDTLITQFAT--IPDSRVIIFVVQRSTAQRVSDFLNRSEEVMKQLSSS 495
Query: 486 GDLVKATEFIGQSSGKASKG---QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVD 542
GD K + IG G +G QS Q+ VL +F G VIVATS+ EEGLD+ +
Sbjct: 496 GD--KREDMIGYVLGTNKQGAVQQSPDEQKTVLGRFNTGKLKVIVATSVVEEGLDVAACN 553
Query: 543 LVICFDANV-SPLRMIQRMGRTGRKH 567
L+I ++ + S +++IQ+ GR K+
Sbjct: 554 LIIKYNCSSGSAIQLIQQRGRARAKN 579
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 22/176 (12%)
Query: 108 VPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPD----GKIVFAAPS 162
+ +R YQ + + AL N +V PTG GKT +A N + + ++V P
Sbjct: 73 LKLRTYQEELVQPALEGKNCVVVAPTGAGKTEVAIYAALNHIKERHNQEKAARVVLLVPK 132
Query: 163 RPLVMQQ----IEAC---HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEK 215
PLV QQ ++ C +++ GI D TG+ +R + + +TPQ+L
Sbjct: 133 IPLVSQQKERFLKYCAGQYHVCGIHGSEKSD-TGE---GRRDDVLQA-HIVVMTPQILIN 187
Query: 216 DIQSGTCLMKYLVC----LVIDEAHRATGNYAYCTAIRELMSVPVQL-RILALTAT 266
+QS + V +V DE H+ +GN+ Y R + + +I+ LTA+
Sbjct: 188 MLQSVRRNERLYVSDFSMMVFDEVHKTSGNHPYVLINRLVQEWDYEKPQIIGLTAS 243
>gi|149408122|ref|NP_077024.2| probable ATP-dependent RNA helicase DHX58 [Homo sapiens]
gi|50401123|sp|Q96C10.1|DHX58_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DHX58; AltName:
Full=Probable ATP-dependent helicase LGP2; AltName:
Full=Protein D11Lgp2 homolog; AltName: Full=RIG-I-like
receptor 3; Short=RLR-3; AltName: Full=RIG-I-like
receptor LGP2; Short=RLR
gi|15928965|gb|AAH14949.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Homo sapiens]
gi|119581201|gb|EAW60797.1| likely ortholog of mouse D11lgp2, isoform CRA_b [Homo sapiens]
gi|119581202|gb|EAW60798.1| likely ortholog of mouse D11lgp2, isoform CRA_b [Homo sapiens]
gi|325463123|gb|ADZ15332.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [synthetic construct]
Length = 678
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F + + R IIF+ R S ++ L L ++A
Sbjct: 343 THGPENPKLEMLEKILQRQFSSSNS--PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V++KF+ G N++VATS+ EEGLDI ++V+ +
Sbjct: 401 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460
Query: 552 SPLRMIQRMGRT 563
+ + M+Q GR
Sbjct: 461 NEISMVQARGRA 472
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + WT+ ++G + P RA F R + T ++L+ + S
Sbjct: 63 HGEEFRRM--LDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS 269
+ +V+DE H + Y + + + + +Q ++L LTA+PG+
Sbjct: 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172
>gi|380422390|ref|NP_001244086.1| probable ATP-dependent RNA helicase DHX58 [Danio rerio]
gi|344313235|gb|AEN04477.1| probable ATP-dependent helicase LGP2 [Danio rerio]
Length = 679
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 113/485 (23%), Positives = 203/485 (41%), Gaps = 50/485 (10%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ + + AL N+++ LPTG GKT A V + K+ LV Q
Sbjct: 5 LRPYQEEVVQAALRGENSIIWLPTGGGKTRAAVYVAEKHLETKANAKVAVLVNKVHLVDQ 64
Query: 169 QI--EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV---FFVTPQVLEKDI----QS 219
E H + ++ I S +++ F + RV T Q+LE + +
Sbjct: 65 HYMKEFGHYL---RHKYRIKAISGDS-SEKDFFGRLVRVSDLVICTAQILENALNNMDED 120
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPG-----S 269
+ LVIDE H Y + + V+ +IL LTA+PG S
Sbjct: 121 KHVEITDFTLLVIDECHHTNKESVYNKIMWRYVEKKVRKEGRLPQILGLTASPGTGGNKS 180
Query: 270 KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHN------RKIELIEVE----MGQEAVEI 319
+ ++H++ + L+ + S ++ + + N ++ +++E G +
Sbjct: 181 LDKAVEHVLQ--ICANLDSKIVSTKNYTPMLQNFVPKPKKEYDIVERRDKDPFGDHLKSM 238
Query: 320 NNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAY 379
I E + P SR + L ++Y+ D++ + + Q + Y
Sbjct: 239 MLMIHEFMPPTVSR--GLRELGTQEYEA----DVVELEKAGVKVNNRLIAQCAL-HLRKY 291
Query: 380 FGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGA 439
AL+ IR + + + Y KL G+ F+ D ++L S +
Sbjct: 292 NDALLINDTIRMVDAFRVLEEFYNSRSSKLLDGTDI-FLQGLFDENSLELKHLASDAR-Y 349
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQ 497
++PKL+++ L++ F+ + SR IIFS R + + + T +L V T I
Sbjct: 350 ENPKLAQLQSRLLEEFQDTN---SRGIIFSKTRRGTHCLNDWVKTNRELQRVNITAGILT 406
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
+G + +Q Q++V+ FR G N++++TS+ EEGLDI E +LV+ + + +
Sbjct: 407 GAGNGANNMTQTEQKSVISHFRQGYLNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQ 466
Query: 558 QRMGR 562
Q GR
Sbjct: 467 QASGR 471
>gi|297624335|ref|YP_003705769.1| DEAD/DEAH box helicase [Truepera radiovictrix DSM 17093]
gi|297165515|gb|ADI15226.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
17093]
Length = 526
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 19/155 (12%)
Query: 444 LSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKAS 503
L+ L VL D S I+F+ + V ++ AL ++G L +A
Sbjct: 221 LASRLGVLSDVLHVHGTGAS--IVFTRTKAEVDELAKALTSLGHLAEAVH---------- 268
Query: 504 KGQSQKVQ-QAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
G +VQ + VLE+FRA V+VAT + GLDI EVDLV+ + P R R GR
Sbjct: 269 -GDLNQVQRERVLERFRASQVTVLVATDVAARGLDIPEVDLVVHYRFPEQPERYQHRSGR 327
Query: 563 TGRK-HDGRIPHIFKP----EVQFVELSIEQYVSR 592
TGR G + ++ P E+ +E +I + + R
Sbjct: 328 TGRAGRAGTVVLLYSPRERRELALLERAIARRIER 362
>gi|10432595|dbj|BAB13818.1| unnamed protein product [Homo sapiens]
Length = 678
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F + + R IIF+ R S ++ L L ++A
Sbjct: 343 THGPENPKLEMLEKILQRQFSSSNS--PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V++KF+ G N++VATS+ EEGLDI ++V+ +
Sbjct: 401 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460
Query: 552 SPLRMIQRMGRT 563
+ + M+Q GR
Sbjct: 461 NEISMVQARGRA 472
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + WT+ ++G + P RA F R + T ++L+ + S
Sbjct: 63 HGEEFRRM--LDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS 269
+ +V+DE H + Y + + + + +Q ++L LTA+PG+
Sbjct: 119 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 172
>gi|115401870|ref|XP_001216523.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114190464|gb|EAU32164.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1635
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 12/134 (8%)
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT---IGDLVKATEFIGQ 497
SPKL E L+ + D +IF+ R +V + L+ D + F+G
Sbjct: 339 SPKL----EALISFLSSTDDSTFSGLIFAKQRATVTVLATLLSVHPLTKDRFRCAAFVGW 394
Query: 498 SSGKASK---GQ--SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
S G K G+ S ++Q+ L +FR+G N+IVAT + EEG+DI +VIC+D +
Sbjct: 395 SGGGNRKDLIGELLSMQMQRDTLSEFRSGQKNLIVATDVLEEGIDISACSVVICYDKPAN 454
Query: 553 PLRMIQRMGRTGRK 566
+QR GR RK
Sbjct: 455 VKSFVQRRGRARRK 468
>gi|299754132|ref|XP_002911949.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
gi|298410618|gb|EFI28455.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
Length = 1457
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 83/195 (42%), Gaps = 34/195 (17%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF------PDGKIVFAAPSRP 164
R YQ I + A N + L TGLGKTLI+ +++ RW D I+F P
Sbjct: 20 RKYQEEIFRQAQKGNVIAYLRTGLGKTLISVLLM----RWMCTQEKAKDKAIIFLVPKVA 75
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASF-----WKTK----RVFFVTPQVLEK 215
LV QQ H G+ T +I SF WK + VF TPQ+ +
Sbjct: 76 LVEQQANYIHKQTGL-------RTCKIHGALNLSFADRDGWKKRFADHDVFVTTPQMFLE 128
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV-PVQLR--ILALTATPGSKQQ 272
I ++ ++ DE H A N+ Y +RE V P+ R I +TA+P Q+
Sbjct: 129 AITHAVWKIEQCSLIIFDECHHARKNHPYNGIMREYFQVQPLNARPKIFGMTASPYWNQK 188
Query: 273 TIQHIIDNLYISTLE 287
L +STLE
Sbjct: 189 N-----PALSLSTLE 198
Score = 47.4 bits (111), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG 500
+PKL M+ ++ H ++IIF R + + L I +L K G G
Sbjct: 368 TPKLRIMVNIIRSHLANP----IQMIIFVEQRQTAACLAQVLEVIPEL-KGLAKCGYLMG 422
Query: 501 KASKG------QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
+ G + +K + ++ FR N+++ATS+ EEGLD +LVI FD +
Sbjct: 423 HGTAGDITRRDEERKSKADPIKLFREKEINILIATSVAEEGLDFPACELVIRFDPPKHLV 482
Query: 555 RMIQRMGRTGRK 566
+Q GR K
Sbjct: 483 GYVQSRGRARSK 494
>gi|398392319|ref|XP_003849619.1| dsRNA-specific nuclease [Zymoseptoria tritici IPO323]
gi|339469496|gb|EGP84595.1| dsRNA-specific nuclease [Zymoseptoria tritici IPO323]
Length = 1537
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 460 PKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEF-IGQSSGKASKGQSQKVQQA-VLEK 517
P + R I+F + R + R + IG ++F IG SG A +G QQ L K
Sbjct: 445 PSNHRCIVFVDQRYTARLLTRLFQKIGTKHLHSQFLIGHGSGNADEGSFTFRQQVWTLLK 504
Query: 518 FRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
FR G +N + ATS+ EEGLD+ + +LV+ FD + ++ +Q GR
Sbjct: 505 FRKGVFNCLFATSVAEEGLDVPDCNLVVRFDMYKTMIQYVQSRGR 549
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 28/178 (15%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP------ 164
R+YQ + + A NT+ L TG GKTLIA +++ RW D ++ A +P
Sbjct: 94 REYQIELFERAKKENTIAVLDTGSGKTLIAVLLL----RWMIDNELEDRAAGKPSRVSFF 149
Query: 165 ------LVMQQ--IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKD 216
LV QQ + C+ + + D + + + + +V T ++L +
Sbjct: 150 LVSSVTLVYQQHSVLECNLDHKVARLCGADNVDRFNKSSWEKLFYENKVIVCTAEILFQC 209
Query: 217 IQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATP 267
+ MK + L+ DEAH A N+ + +++ S P R+ +TA+P
Sbjct: 210 LSRSYITMKQINLLIFDEAHHAKQNHPFARIVKDFYLTEPDATSCP---RVFGMTASP 264
>gi|449507056|ref|XP_002194080.2| PREDICTED: interferon-induced helicase C domain-containing protein
1-like [Taeniopygia guttata]
Length = 1033
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 12/130 (9%)
Query: 440 QSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMN------ALATIGDLVKAT 492
++ KL K+ L++ F KT++P R I+F+ R S + +G +KA
Sbjct: 703 ENEKLMKLRNTLMEEFTKTEEP---RGIVFTKTRLSAFALFQWIKDNPKFEEVG--IKAH 757
Query: 493 EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
IG K +Q Q+ V++KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 758 YLIGSGHKSEMKPMTQNEQREVIDKFRCGNVNLLIATTVAEEGLDIKECNIVIRYGLVTN 817
Query: 553 PLRMIQRMGR 562
+ M+Q GR
Sbjct: 818 EIAMVQARGR 827
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 34/192 (17%)
Query: 107 NVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAP 161
++ +RDYQ + K AL N ++ LPTG GKT +A + + R GK++
Sbjct: 324 DLTLRDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKKRASEPGKVIVLVN 383
Query: 162 SRPLVMQQIEACHNIVGIPQEW--TIDMTGQISPTKRASFWKTKR---VFFVTPQVLEKD 216
PLV Q ++ + W I ++G + SF + R V T Q+LE
Sbjct: 384 KVPLVEQHLKT--EFSPFLKRWYQVIGLSG--DSQLKISFPEVVRRNDVIISTAQILENS 439
Query: 217 IQSG------TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR----------- 259
+ + + + ++IDE H Y +R + ++ R
Sbjct: 440 LLNASKEDEESVHLSDFSLIIIDECHHTQKEGVYNNIMRRYLKEKMKNRKLAKENKPLIP 499
Query: 260 ---ILALTATPG 268
IL LTA+PG
Sbjct: 500 QPQILGLTASPG 511
>gi|291419805|gb|ADE05310.1| interferon-induced helicase C domain-containing protein 1 [Anas
platyrhynchos]
Length = 458
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 12/126 (9%)
Query: 440 QSPKLSKMLEVLVDHF-KTKDPKHSRVIIFSNFRGSVRDIMNALA------TIGDLVKAT 492
++ KL K+ L++ F KTK+P R IIF+ R S + + +G +KA
Sbjct: 337 ENEKLVKLRNTLMEEFTKTKEP---RGIIFTKTRQSAFALFQWIKDNPKFEEVG--IKAH 391
Query: 493 EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
IG +K +Q Q+ V++KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 392 YLIGAGHNSETKPMTQNEQREVIDKFRGGSVNLLIATTVAEEGLDIKECNIVIRYGLVTN 451
Query: 553 PLRMIQ 558
+ M+Q
Sbjct: 452 EIAMLQ 457
>gi|193783596|dbj|BAG53507.1| unnamed protein product [Homo sapiens]
Length = 487
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F + + R IIF+ R S ++ L L ++A
Sbjct: 306 THGPENPKLEMLEKILQRQFSSSNS--PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 363
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V++KF+ G N++VATS+ EEGLDI ++V+ +
Sbjct: 364 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 423
Query: 552 SPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 424 NEISMVQARGR 434
>gi|363992268|gb|AEW46679.1| interferon induced with helicase C domain 1 [Pteropus alecto]
Length = 1024
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMN------ALATIGDLVKATE 493
++ KL+K+ +++ + T+ + +R IIF+ R S + A +G VKA
Sbjct: 695 ENEKLTKLRNTIMEQY-TRTAEAARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 751
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G ++++AT++ EEGLDI E +++I + +
Sbjct: 752 LIGAGHSSEFKPMTQNEQKEVISKFRTGKISLLIATTVAEEGLDIKECNIIIRYGLVTNE 811
Query: 554 LRMIQRMGR 562
+ MIQ GR
Sbjct: 812 IAMIQARGR 820
Score = 43.5 bits (101), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 44/194 (22%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPSRP 164
+R YQ + + AL N ++ LPTG GKT +A + + R GK++ P
Sbjct: 307 LRPYQMEVAQPALEGKNVIICLPTGSGKTRVAVKIAKDHLDKKKRASEPGKVIVLVNKVP 366
Query: 165 LVMQQ--------IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKD 216
LV Q ++ +N++G+ + D +IS K K+ V T Q+LE
Sbjct: 367 LVEQLFRKEFQPFLKKWYNVMGL----SGDTQLKISFPKVV---KSHDVIISTAQILENS 419
Query: 217 I-------QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS---------------V 254
+ G L + + +VIDE H Y +R + +
Sbjct: 420 LLNSEKGEDDGVQLSDFSL-IVIDECHHTNKEAVYNNIMRRYLKQKLRNNKLKKENKPVI 478
Query: 255 PVQLRILALTATPG 268
P+ +IL LTA+PG
Sbjct: 479 PLP-QILGLTASPG 491
>gi|154301554|ref|XP_001551189.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10]
Length = 1842
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI---GDLVKATEFIGQ 497
S K+ +L +L D F+ P + + I+F R + R + + L+T +KA +G
Sbjct: 725 STKVVALLSILKDRFQR--PTNDKCIVFVKERYTARLLASLLSTPEAGTPFLKAAPLVGT 782
Query: 498 SSGKASKGQ-SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
+S A + + + Q + FR G N ++ATS+ EEGLDI + +LV+ FD + ++
Sbjct: 783 TSASAGEMHITFRSQTLTMHNFRNGKINCLIATSVAEEGLDIPDCNLVVRFDLYNTVIQY 842
Query: 557 IQRMGRTGRKHDGRIPHI 574
IQ GR R + R H+
Sbjct: 843 IQSRGR-ARHINSRYYHM 859
>gi|444302288|pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 9/130 (6%)
Query: 424 IRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMN--- 480
+R K+L + + + ++ KL+K+ + +HF T+ + +R IIF+ R S +
Sbjct: 113 LRNKKILKKLAENPEYENEKLTKLRNTIXEHF-TRTEESARGIIFTKTRQSAYALSQWIT 171
Query: 481 ---ALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLD 537
A +G VKA IG K +Q Q+ V+ KFR G N+++AT++ EEGLD
Sbjct: 172 DNKKFAEVG--VKAHHLIGAGHSSEFKPXTQNEQREVISKFRTGKINLLIATTVAEEGLD 229
Query: 538 IMEVDLVICF 547
I E ++VI +
Sbjct: 230 IKECNIVIRY 239
>gi|291391627|ref|XP_002712267.1| PREDICTED: interferon induced with helicase C domain 1 [Oryctolagus
cuniculus]
Length = 1022
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGDLVKATE 493
++ KL K+ +++ + T+ + +R IIF+ R S + + A +G VKA
Sbjct: 694 ENEKLIKLRNTIMEQY-TRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHH 750
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E +++I + +
Sbjct: 751 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNVIIRYGLVTNE 810
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 811 IAMVQARGR 819
Score = 42.0 bits (97), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 76/192 (39%), Gaps = 36/192 (18%)
Query: 108 VPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPS 162
+ +R YQ + + AL N ++ LPTG GKT +A + + + GK++
Sbjct: 306 LQLRSYQMEVAQPALEGKNIIICLPTGSGKTRVAVFIAKDHLDKKKKESNPGKVIVLVNK 365
Query: 163 RPLVMQQIEACHNIVGIPQEW--TIDMTGQISPTKRASF---WKTKRVFFVTPQVLEKDI 217
PLV Q ++W I ++G + SF K+ V T Q+LE +
Sbjct: 366 VPLVEQLFRK--EFKPFLKKWYRVIGLSGDTQL--KISFPEVVKSHDVIISTAQILENSL 421
Query: 218 -------QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS--------------VPV 256
+G L + + L+IDE H Y +R + V
Sbjct: 422 LNFENGEDAGVQLSDFSL-LIIDECHHTNKEAVYNNIMRRYLKQKLKNNRLKKENKPVIA 480
Query: 257 QLRILALTATPG 268
+IL LTA+PG
Sbjct: 481 LPQILGLTASPG 492
>gi|319941925|ref|ZP_08016246.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
[Sutterella wadsworthensis 3_1_45B]
gi|319804578|gb|EFW01448.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
[Sutterella wadsworthensis 3_1_45B]
Length = 503
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 13/120 (10%)
Query: 449 EVLVDHFKTKDPKHS---RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKG 505
+VL+D KT+ P+ + +V++F +NA T L + E +G ++
Sbjct: 264 DVLIDMLKTRGPEGTPLTQVLVF----------VNAKITCRRLARTLERVGINADAIHGD 313
Query: 506 QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
++Q+ +Q LE F+ G +V+VAT + GLDI E+ VI +D S + R+GRTGR
Sbjct: 314 KTQEERQVALEGFKNGAIHVLVATDVAARGLDIKELPFVINYDVPYSAEDYVHRIGRTGR 373
>gi|440903247|gb|ELR53934.1| Putative ATP-dependent RNA helicase DHX58 [Bos grunniens mutus]
Length = 677
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 6/129 (4%)
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKATE 493
G ++PKL + +L F++ P R IIF+ R S ++ L L ++
Sbjct: 345 GPENPKLEVLEAILQKQFRS--PDSPRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIRPQV 402
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
G + Q QQ V++KFR G N++VATS+ EEGLDI + ++V+ + +
Sbjct: 403 LTGAGNNSQKTQMIQMTQQEVIQKFRTGTLNLLVATSVAEEGLDIPQCNVVVRYGLLTNE 462
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 463 ISMVQARGR 471
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 19/187 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVARRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT--- 221
E + + + WTI ++G + P RA F R + T ++L+K + S
Sbjct: 63 HCEEFSRM--LERRWTITTLSGDMGP--RAGFGHVARRHDLLICTAELLQKALASPEEEE 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS-KQQTI 274
+ LV+DE H + Y + + + + +Q ++L LTA+PG+ T+
Sbjct: 119 HVELNAFSLLVVDECHHTHKDTVYNIILSQYLELKLQRTRPLPQVLGLTASPGTGGASTL 178
Query: 275 QHIIDNL 281
+ ID++
Sbjct: 179 EGAIDHV 185
>gi|62751389|ref|NP_001015545.1| probable ATP-dependent RNA helicase DHX58 [Bos taurus]
gi|59858269|gb|AAX08969.1| hypothetical protein FLJ11354 [Bos taurus]
gi|296476327|tpg|DAA18442.1| TPA: RNA helicase LGP2 [Bos taurus]
Length = 680
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM------NALATIGDLVKA 491
G ++PKL + +L F++ P R IIF+ R S ++ L T+ +
Sbjct: 345 GPENPKLEVLEAILQRQFRS--PDSPRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIRPQV 402
Query: 492 TEFIGQSSGKASKGQ-SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
G +S K Q +Q+ QQ V++KFR G N++VATS+ EEGLDI + ++V+ +
Sbjct: 403 LTGAGNNSQKTQMIQMTQRDQQEVIQKFRTGTLNLLVATSVAEEGLDIPQCNVVVRYGLL 462
Query: 551 VSPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 463 TNEISMVQARGR 474
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 19/187 (10%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+V LV Q
Sbjct: 3 LRPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVARRHLETVDGAKVVVLVNRVHLVTQ 62
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + + WTI ++G + P RA F R + T ++L+K + S
Sbjct: 63 HCEEFSRM--LERRWTITTLSGDMGP--RAGFGHVARRHDLLICTAELLQKALASPEEEE 118
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGSKQ-QTI 274
+ LV+DE H + Y + + + + +Q ++L LTA+PG+ T+
Sbjct: 119 HVELNAFSLLVVDECHHTHKDTVYNIILSQYLELKLQRTRPLPQVLGLTASPGTGGVSTL 178
Query: 275 QHIIDNL 281
+ ID++
Sbjct: 179 EGAIDHV 185
>gi|379987678|gb|AFD22619.1| dicer-like 2 protein [Nicotiana attenuata]
Length = 1403
Score = 65.1 bits (157), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 112/231 (48%), Gaps = 36/231 (15%)
Query: 431 MQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS---VRDIMNALATIGD 487
+ ++ G + K++ ++E L+++ +D K R IIF + +R + N L + D
Sbjct: 358 IHANVDAGYLTSKVNSLIESLLEY---RDLKDLRCIIFVERIITAIVLRSLXNEL--LPD 412
Query: 488 LVK-ATEFIGQSSGKAS--KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
L TE+ ++G +S + QS+ VQ ++E+FR G N+IVATSI EEGLD+ +LV
Sbjct: 413 LSGWKTEY---TAGHSSLLQSQSRNVQNKIVEEFRKGVVNIIVATSILEEGLDVQSCNLV 469
Query: 545 ICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVK------- 597
I FD + + IQ GR ++ I + + + ++ Y+ G+ ++
Sbjct: 470 IRFDPSATVCSFIQSRGRARMQNSHFILMVGSGDASTLT-RMQNYMQSGEIMRQESLRHA 528
Query: 598 -------DDHAITTPIFKEKLTAAETDLIAK----YFHPT---SDSTWRPS 634
DD P +K + T A L + YF+ + SD ++PS
Sbjct: 529 SIPCSPLDDELHDEPYYKVETTGAVVTLSSSVSLLYFYCSRLPSDGYYKPS 579
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 22/180 (12%)
Query: 105 PVNVP-VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI--YNFFRWFPDGKI-VFAA 160
P ++P R YQ +TAL NT+V L TG GKTLIA +++ Y + P I VF
Sbjct: 16 PDSLPFARSYQLEALETALKRNTIVYLETGSGKTLIAIMLLRSYAYLLRKPSPYIAVFLV 75
Query: 161 PSRPLVMQQIEAC--HNIVGIPQEWTIDMTGQISPTKR-ASFWKTK----RVFFVTPQVL 213
P+ LV QQ +A H + + + W G++ A+ W+ + V +TP +L
Sbjct: 76 PTVVLVAQQGDALIMHTDLKVGKYW-----GEMGVDYWDAATWQKQVVDHEVLVMTPAIL 130
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL------RILALTATP 267
++ ++ + L+ DE H A G + Y ++E + L RI +TA+P
Sbjct: 131 LAALRHSFLKIEMIKVLIFDECHNARGKHPYACIMKEFYHRQLTLESAQLPRIFGMTASP 190
>gi|357140713|ref|XP_003571908.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog
3b-like [Brachypodium distachyon]
Length = 1414
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 11/141 (7%)
Query: 113 YQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK-----IVFAAPSRPLVM 167
YQ + + AL NT+ L TG GKT++A ++ R G+ +VF AP+ LV
Sbjct: 23 YQVEVFEAALVGNTIAVLDTGSGKTMVAVMLAREHVRRVRAGEAPRRTVVFLAPTVHLVH 82
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK----TKRVFFVTPQVLEKDIQSGTCL 223
QQ E + +G + A WK +K + +TPQ+L ++
Sbjct: 83 QQFEVISEYTDLDATECYGASGVGGWS--AEHWKEEVGSKEIAVMTPQILLDALRHAFVT 140
Query: 224 MKYLVCLVIDEAHRATGNYAY 244
M + L++DE HRA GN+ Y
Sbjct: 141 MSVVSLLILDECHRACGNHPY 161
Score = 42.0 bits (97), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 498 SSGKASK-GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
+ G SK S VQQ L+ FRAG N++ T + EEG+D+ VI FD +
Sbjct: 380 TGGSTSKDALSPAVQQFTLDLFRAGKVNLLFTTDVTEEGIDVPNCSCVIRFDLPRTVSSY 439
Query: 557 IQRMGR 562
+Q GR
Sbjct: 440 VQSRGR 445
>gi|72391252|ref|XP_845920.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62175291|gb|AAX69436.1| hypothetical protein Tb927.7.2970 [Trypanosoma brucei]
gi|70802456|gb|AAZ12361.1| hypothetical protein Tb927.7.2970 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 824
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 12/137 (8%)
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRV--IIFSNFRGSVRDIMNALA---TIGDLVKATEFI 495
S ++ +L++L K + H V IIF + R SV I A+ T+ L K +
Sbjct: 392 SSRVQFLLQLLSWIGKHVEANHVEVAGIIFCDTRASVFRITEAIEKIPTLSSLYKPRALV 451
Query: 496 GQSSGKA-----SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
G+ GK KG + Q+ V+++FR G ++VATS+ EEGLDI + +LVI +D+
Sbjct: 452 GK--GKTLVDGEEKGMTDAQQRDVIDEFRKGNTRLLVATSLAEEGLDIAQCNLVIRYDSC 509
Query: 551 VSPLRMIQRMGRTGRKH 567
VS +Q GR R++
Sbjct: 510 VSLRSFVQSRGRARRRN 526
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 23/144 (15%)
Query: 110 VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ 169
+R YQ + + A+ ++++ LPTG GKT++AA I ++ R + +IVF PLV QQ
Sbjct: 20 LRPYQQELFEKAIRGDSIIYLPTGGGKTVVAA-AIAHYMRRKHEKRIVFVVNRVPLVAQQ 78
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWK------------TKRVFFVTPQVLEKDI 217
+ +++G G+ K W T +F K I
Sbjct: 79 AKVLESVLGKGSRVATVRGGK----KSVKSWSVLVDEGCDGVVITDSIFHEWIIGSPKAI 134
Query: 218 QSGTCLMKYLVCLVIDEAHRATGN 241
TCL +VIDE H ATG
Sbjct: 135 TEDTCL------VVIDEVHNATGG 152
>gi|255547506|ref|XP_002514810.1| ATP binding protein, putative [Ricinus communis]
gi|223545861|gb|EEF47364.1| ATP binding protein, putative [Ricinus communis]
Length = 1388
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 75/134 (55%), Gaps = 13/134 (9%)
Query: 435 ISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK---- 490
I G + K+ +++ L+D+ +D + R IIF N R ++ L +G+L+
Sbjct: 350 IEAGLLTTKIFCLIDSLLDY---RDIRDLRCIIFVN-RVIAAIVLQTL--LGELLPRYNS 403
Query: 491 --ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD 548
T++I ++ + + QS+K Q ++E+FR G N+IVATSI EEGLD+ +LV+ FD
Sbjct: 404 GWKTQYIAGNNFRL-QSQSRKTQNEIVEEFREGKVNIIVATSILEEGLDVQSCNLVVRFD 462
Query: 549 ANVSPLRMIQRMGR 562
+ + IQ GR
Sbjct: 463 PSTTVSSFIQSRGR 476
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 24/182 (13%)
Query: 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKI-VF 158
WI V + YQ + A+ NT+V L TG GKTLIA +++ ++ P I VF
Sbjct: 4 WIVAV---LCSYQLEALEKAIQQNTIVFLETGSGKTLIAIMLLRSYAHLLRKPSPFIAVF 60
Query: 159 AAPSRPLVMQQIEAC--HNIVGIPQEWTIDMTGQISPT-KRASFWKTK----RVFFVTPQ 211
P LV QQ EA H + + + W G++ A WK + V +TPQ
Sbjct: 61 LVPQVVLVKQQAEAVETHTDLTVGKYW-----GEMGVDFWDAGSWKQQIEQYEVLVMTPQ 115
Query: 212 VLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL------RILALTA 265
+L ++ + + L+ DE H A G + Y + E + RI +TA
Sbjct: 116 ILLDGLRHSFFKLDCIKVLIFDECHHARGKHPYACILTEFYHRQLTYRDSALPRIFGMTA 175
Query: 266 TP 267
+P
Sbjct: 176 SP 177
>gi|449442659|ref|XP_004139098.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Cucumis sativus]
Length = 1393
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 20/150 (13%)
Query: 431 MQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK 490
++ ++ G +PK+ ++ L+++ +D R I+F V I++A+A L
Sbjct: 358 LEADMAAGLMTPKVVCLIASLLEYRSIED---IRCIVF------VERIVSAVALQTLLSL 408
Query: 491 A--------TEFI-GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
T++I G +SG + QS+K Q ++E+FR G N+IVATSI EEGLD+
Sbjct: 409 LLPKYTCWKTKYIAGSTSGLQT--QSKKKQNEIVEEFRCGKVNIIVATSILEEGLDVQSC 466
Query: 542 DLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+LVI FD + + IQ GR K+ I
Sbjct: 467 NLVIRFDPSSTVCSFIQSRGRARMKNSDYI 496
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 19/172 (11%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKI-VFAAPSRPLVM 167
R YQ + AL NT+V L TG GKTLIA +++ +F P + VF P LV
Sbjct: 21 RSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQLRKPSPFVAVFLVPQVVLVT 80
Query: 168 QQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQSGT 221
QQ EA H + + + DM + WK + V +TP +L ++
Sbjct: 81 QQAEALKMHTDLSVGLYYG-DMGVDFWD---GAIWKREIEKHEVLVMTPAILLNGLRHSF 136
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL------RILALTATP 267
+ + L++DE H A G + Y + E + L RI +TA+P
Sbjct: 137 FRLSMIKVLILDECHHARGKHPYACIMTEFYHQQLSLGKSDLPRIFGMTASP 188
>gi|395532380|ref|XP_003768248.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 [Sarcophilus
harrisii]
Length = 675
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Query: 439 AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALA---TIGDL-VKATEF 494
+++PKL + ++L + F P SR I+F+ R S ++ L T+ L +KA
Sbjct: 347 SENPKLEDLEQILEEQFSAPGP--SRGIVFTQTRQSAHALLLWLQERPTLRQLGIKAQVL 404
Query: 495 IGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
G +Q Q V+++FRAG N++VATS+ EEGLDI + ++V+ + + +
Sbjct: 405 TGAGHNSQITHMTQTEQLEVIQRFRAGTVNLLVATSVAEEGLDIPQCNVVVRYGLLTNEI 464
Query: 555 RMIQRMGR 562
M+Q GR
Sbjct: 465 SMMQARGR 472
>gi|383856609|ref|XP_003703800.1| PREDICTED: endoribonuclease Dicer-like [Megachile rotundata]
Length = 1441
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 32/181 (17%)
Query: 107 NVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI----YNFFRWFPDGK--IVFAA 160
N R YQ + + AL NT+V LPTG GKT IA +I + R + +GK +F
Sbjct: 7 NFIARTYQVDLLEVALRQNTIVYLPTGAGKTFIAVKLIEELSADIRRPYNEGKKHTIFVV 66
Query: 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK---------RVFFVTPQ 211
+ PLV+QQ E + G+ + +S FWK + +V +T Q
Sbjct: 67 NTVPLVVQQSEYIGRLTGL-------LCSPLSGDCNVDFWKDQEWNQQLEKYQVLVMTAQ 119
Query: 212 VLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM------SVPVQLRILALTA 265
+L + G ++ + ++ DE HRA ++ +R++M S Q ++LAL+A
Sbjct: 120 ILVDALSHGYIYLRNINLIIFDECHRAVNDH----PMRQIMQFFERCSNNEQPKVLALSA 175
Query: 266 T 266
+
Sbjct: 176 S 176
>gi|261329404|emb|CBH12385.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 824
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 10/110 (9%)
Query: 466 IIFSNFRGSVRDIMNALA---TIGDLVKATEFIGQSSGKA-----SKGQSQKVQQAVLEK 517
IIF + R SV I A+ T+ L K +G+ GK KG + Q+ V+++
Sbjct: 419 IIFCDTRASVFRITEAIEKIPTLSSLYKPRALVGK--GKTLVDGEEKGMTDAQQRDVIDE 476
Query: 518 FRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH 567
FR G ++VATS+ EEGLDI + +LVI +D+ VS IQ GR R++
Sbjct: 477 FRKGNTRLLVATSLAEEGLDIAQCNLVIRYDSCVSLRSFIQSRGRARRRN 526
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 23/144 (15%)
Query: 110 VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ 169
+R YQ + + A+ ++++ LPTG GKT++AA I ++ R + +IVF PLV QQ
Sbjct: 20 LRPYQQELFEKAIRGDSIIYLPTGGGKTVVAA-AIAHYMRRKHEKRIVFVVNRVPLVAQQ 78
Query: 170 IEACHNIVGIPQEWTIDMTGQISPTKRASFWK------------TKRVFFVTPQVLEKDI 217
+ +++G G+ K W T +F K I
Sbjct: 79 AKVLESVLGKGSRVATVRGGK----KSVKSWSVLMDEGYDGVVITDSIFHEWIIGSPKAI 134
Query: 218 QSGTCLMKYLVCLVIDEAHRATGN 241
TCL +VIDE H ATG
Sbjct: 135 TEDTCL------VVIDEVHNATGG 152
>gi|449478272|ref|XP_004155270.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog
1-like [Cucumis sativus]
Length = 1987
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 23/198 (11%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK----IVFAAPSRPLV 166
R YQ + + A NT+ L TG GKTLIA ++I + + VF P PLV
Sbjct: 329 RQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYNDLQTQNKKMLAVFLVPKVPLV 388
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW---------KTKRVFFVTPQVLEKDI 217
QQ E + +E T G FW +TK+V +T Q+L +
Sbjct: 389 YQQAE-------VIRERTGYQVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNIL 441
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLR--ILALTATPGSKQQTI 274
+ M+ + L++DE H A + Y + E + P + R + +TA+P + +
Sbjct: 442 RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKERRPSVFGMTASPVNLKGVS 501
Query: 275 QHIIDNLYISTLEYRNES 292
I + I LE + +S
Sbjct: 502 NQIDCAIKIRNLESKLDS 519
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 427 VKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG 486
V ++ +++ G +PK+ ++++L+ + T+D R IIF S + A +
Sbjct: 715 VDEIIGAAVADGKVTPKVQSLVKILLKYQYTED---FRAIIFVERVVSALVLPKVFAELP 771
Query: 487 DL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
L +K+ IG ++ S+ Q + KFR G ++VATS+ EEGLDI + ++V
Sbjct: 772 SLSFIKSASLIGHNN---SQDMRTCQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVV 828
Query: 545 ICFDANVSPLRMIQRMGRT 563
+ FD + L IQ GR
Sbjct: 829 MRFDLAKTVLAYIQSRGRA 847
>gi|449432976|ref|XP_004134274.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Cucumis sativus]
Length = 1986
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 23/198 (11%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK----IVFAAPSRPLV 166
R YQ + + A NT+ L TG GKTLIA ++I + + VF P PLV
Sbjct: 328 RQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYNDLQTQNKKMLAVFLVPKVPLV 387
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW---------KTKRVFFVTPQVLEKDI 217
QQ E + +E T G FW +TK+V +T Q+L +
Sbjct: 388 YQQAE-------VIRERTGYQVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNIL 440
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLR--ILALTATPGSKQQTI 274
+ M+ + L++DE H A + Y + E + P + R + +TA+P + +
Sbjct: 441 RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKERRPSVFGMTASPVNLKGVS 500
Query: 275 QHIIDNLYISTLEYRNES 292
I + I LE + +S
Sbjct: 501 NQIDCAIKIRNLESKLDS 518
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 427 VKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG 486
V ++ +++ G +PK+ ++++L+ + T+D R IIF S + A +
Sbjct: 714 VDEIIGAAVADGKVTPKVQSLVKILLKYQYTED---FRAIIFVERVVSALVLPKVFAELP 770
Query: 487 DL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
L +K+ IG ++ S+ Q + KFR G ++VATS+ EEGLDI + ++V
Sbjct: 771 SLSFIKSASLIGHNN---SQDMRTCQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVV 827
Query: 545 ICFDANVSPLRMIQRMGRT 563
+ FD + L IQ GR
Sbjct: 828 MRFDLAKTVLAYIQSRGRA 846
>gi|357977206|ref|ZP_09141177.1| DEAD/DEAH box helicase [Sphingomonas sp. KC8]
Length = 465
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 17/149 (11%)
Query: 449 EVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQ 508
+VL D + +D H+ IIFSN + +VRD+ AL G+ +AT+ G QS+
Sbjct: 231 DVLRDLLRAED-MHT-AIIFSNRKTTVRDLSTALK--GNGFRATQIHGDME------QSE 280
Query: 509 KVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH- 567
+V++ L++F++G N++VA+ + GLD+ V V FD P + R+GRTGR
Sbjct: 281 RVRE--LDRFKSGEINILVASDVAARGLDVKGVSHVFNFDVPWHPDDYVHRIGRTGRAGA 338
Query: 568 DGRIPHIFKPE----VQFVELSIEQYVSR 592
G+ + PE V+ +E +Q + R
Sbjct: 339 TGKAYTLVTPEDAEAVENIEKLTQQKIPR 367
>gi|119487463|ref|XP_001262524.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181]
gi|158705692|sp|A1D9Z6.1|DCL2_NEOFI RecName: Full=Dicer-like protein 2; Includes: RecName:
Full=Endoribonuclease dcl2; Includes: RecName:
Full=ATP-dependent helicase dcl2
gi|119410681|gb|EAW20627.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181]
Length = 1388
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT---IGDLVKATEFIGQ 497
S ++S E L++ + D + +IF R +V + + L+ + + ++G
Sbjct: 362 SFRISPKFESLLNFLDSLDEREFSGLIFVKQRATVSAMTSLLSVHPCTRERFRCAAYVGW 421
Query: 498 SSGKASKG-----QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
S+G ASK + ++Q+ L+ FR+G N+I+AT + EEG+DI +V+C+D +
Sbjct: 422 SNGSASKDILGDLLNMQLQRDTLDDFRSGRKNLIIATDVLEEGIDISACSVVVCYDKPPN 481
Query: 553 PLRMIQRMGRTGRK 566
+QR GR RK
Sbjct: 482 LKSFVQRRGRARRK 495
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 85/192 (44%), Gaps = 28/192 (14%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV-FAAPSRPLVMQQ 169
R+YQ + + ++ N +VA+ TG GKT IA + I P K+V F AP+ L +QQ
Sbjct: 17 RNYQLEMLEASMKENIIVAMDTGSGKTHIAVLRIKAELDICPPDKLVWFLAPTVALCIQQ 76
Query: 170 IEACHNIVG--IPQEWTIDMTG--QISPTKRASFWKT----KRVFFVTPQVLEKDIQSGT 221
H ++ +P T +TG ++ S W RV T VL + G
Sbjct: 77 ----HEVIASNLPAVRTRTLTGLDKVELWTEQSIWDAVLNGYRVIVSTHAVLADALSHGF 132
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELM----------SVPVQLRILALTATP--GS 269
M L L+ DEAH T +A +R+ +VP RI+ LTA+P S
Sbjct: 133 VKMSRLALLIFDEAHHCTRRHAANKIMRDFYHPTLTKSGPGAVP---RIMGLTASPVVRS 189
Query: 270 KQQTIQHIIDNL 281
Q + + NL
Sbjct: 190 NHQELLTVESNL 201
>gi|344268047|ref|XP_003405875.1| PREDICTED: interferon-induced helicase C domain-containing protein
1 [Loxodonta africana]
Length = 1025
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 9/129 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM------NALATIGDLVKATE 493
++ KL K+ +++ + T+ +R IIF+ R S + + A +G VKA
Sbjct: 697 ENEKLEKLRNTIMEQY-TRTEGSARGIIFTKTRQSAFALSQWITENDKFAEVG--VKAHH 753
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
IG +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI + +
Sbjct: 754 LIGAGHSSEFTHMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNE 813
Query: 554 LRMIQRMGR 562
+ M+Q GR
Sbjct: 814 IAMVQARGR 822
Score = 43.1 bits (100), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 42/229 (18%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPSRP 164
+R YQ + K AL N ++ LPTG GKT +A + + + GK++ P
Sbjct: 308 LRSYQMEVAKPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKSSEPGKVIVLVNKVP 367
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASF---WKTKRVFFVTPQVLEKDI---- 217
LV Q ++W M + SF K+ V T Q+LE +
Sbjct: 368 LVEQLFRK--EFKPFLKKWYRTMGLSGDTQLKISFPEVVKSCDVIISTAQILENSLLNSE 425
Query: 218 ---QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS---------------VPVQLR 259
+G L + + +VIDE H Y +R + +P+ +
Sbjct: 426 KGEDAGVQLSDFSL-IVIDECHHTNKEAVYNNIMRRYLEQKLKNNRLKKQNKPVIPLP-Q 483
Query: 260 ILALTATP---GSKQQT-----IQHIIDNLYISTLEYRNESDQDVSSYV 300
IL LTA+P G+++Q I I NL ST++ E+ ++ ++
Sbjct: 484 ILGLTASPGVGGARKQAKADEHILKICANLDASTIKTVKENVGELREHI 532
>gi|406864416|gb|EKD17461.1| putative Dicer-like protein 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1827
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 439 AQSPKLSKMLEVLVDHFKTK--DPKHSRVIIFSNFRGSVRDIMNALA--TIGD-LVKATE 493
A S LS + +LV + + + P + IIF N R + R + + IG ++
Sbjct: 713 AGSNNLSSKVVLLVRYLRERFERPTDDKAIIFVNQRYTARLLAKLFSQPNIGTPHLRCGT 772
Query: 494 FIGQSSGKASK-GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
+G SG A QS + Q + FR G N + ATS+ EEGLD+ + +LV+ FD +
Sbjct: 773 LVGTRSGDAGDLNQSFRDQVLTMGNFRKGNINCLFATSVAEEGLDVPDCNLVVRFDLYTT 832
Query: 553 PLRMIQRMGRTGRKHDGRIPHIFK 576
++ IQ GR R + R H+++
Sbjct: 833 LIQYIQSRGR-ARHQNSRYIHMYE 855
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 22/175 (12%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF--------RWFPDGKIVFAAPS 162
R YQ + A+ N + L TG GKTLIA +++ + F + P F S
Sbjct: 389 RQYQTELFNEAINKNVIAVLDTGSGKTLIAVLLLRHIFAQELEDRAKGLPKRISFFLVDS 448
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK---TKRVFFVTPQVLEKDIQS 219
LV QQ + P E G I K++++ K V T +VL +
Sbjct: 449 VQLVFQQHAVLKANLDQPMEMFCGDMG-IDLWKKSTWEKHLDKNMVIVCTAEVLRHCLHH 507
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-------SVPVQLRILALTATP 267
M + L+ DEAH A ++AY I++ ++P +I +TA+P
Sbjct: 508 SFLSMAQINLLIFDEAHHAKKDHAYARIIKDFYVTHEDKHTLP---KIFGMTASP 559
>gi|257783884|ref|YP_003179101.1| DEAD/DEAH box helicase [Atopobium parvulum DSM 20469]
gi|257472391|gb|ACV50510.1| DEAD/DEAH box helicase domain protein [Atopobium parvulum DSM
20469]
Length = 450
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
S++ G Q P+L L+ L+D F DP RV++F + V I L G V
Sbjct: 255 SVTQG-QKPQL---LKALIDSF---DPAPERVLVFCRTKSRVDSIYKNLKAAGLKVDVMH 307
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
+ QK + L++FR+ ++VAT + G+DI +D+VI FD + P
Sbjct: 308 ----------ADRPQKARAKALDRFRSASIQILVATDVMSRGIDIQGIDVVINFDVPLDP 357
Query: 554 LRMIQRMGRTGR 565
+ R+GRTGR
Sbjct: 358 EDYVHRIGRTGR 369
>gi|391348645|ref|XP_003748555.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
Length = 1461
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR-----WF------PDGK-IVF 158
R YQ + + A NT+V L TG GKT I+ +++ +F W P GK VF
Sbjct: 27 RSYQIELFEFAKKHNTIVCLGTGTGKTFISVLLVKHFEHEVAGPWIEGSYGEPIGKRTVF 86
Query: 159 AAPSRPLVMQQ--IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKD 216
APS PLV QQ + A H V + T + S + V +TP+V
Sbjct: 87 LAPSVPLVEQQSAVLAQHMTVKVASYVGSMDTDRWSSENWNREFNENGVLVMTPEVCRIA 146
Query: 217 IQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV---PVQLRILALTAT 266
I G M+ + LV+DE HRATG+ Y + ++ + RIL LTA+
Sbjct: 147 IDHGFLPMENINLLVLDECHRATGDDPYVKIMENYANLGDKSRRPRILGLTAS 199
Score = 48.5 bits (114), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 442 PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG------DLVKATEFI 495
P+++++LEV+ KT + ++F R + N + + ++ + +
Sbjct: 346 PRMTRLLEVIRRFEKT----NLSAVVFVKERLVAYVLYNWMRQLSVEDSSFAFIRCSFIV 401
Query: 496 GQSSGKASK-------GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD 548
GQ+ ++ + K Q V++ FR G YN++ ATS+ EEG+D+ +L+I FD
Sbjct: 402 GQAQINYAREIDPESLKMNSKAQNKVMKNFRNGEYNLMFATSVIEEGMDVPACNLIIRFD 461
Query: 549 ANVSPLRMIQRMGRTGRK 566
+ Q GR K
Sbjct: 462 PPMDVRSYTQSKGRARAK 479
>gi|218888141|ref|YP_002437462.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218759095|gb|ACL09994.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 577
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 454 HFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513
HF +P V++F R R + LA+ G +G GK SQ+ +QA
Sbjct: 317 HFGEDEPLAGAVLVFVRTRHGARRLWQQLASTG------LRVGCLQGK----LSQRRRQA 366
Query: 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
L+ FR G Y V+VAT + GLDI V V+ +D + I R+GRTGR
Sbjct: 367 TLDGFRTGRYAVLVATDVAARGLDISRVTHVVNYDVPATADAYIHRIGRTGR 418
>gi|327283103|ref|XP_003226281.1| PREDICTED: interferon-induced helicase C domain-containing protein
1-like [Anolis carolinensis]
Length = 1006
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKATEFI 495
++ KL + E L+ F TK P+ +R IIF+ R S + + VKA I
Sbjct: 675 ENEKLKLLRETLMTEF-TKKPE-ARGIIFTKTRQSAFALYEWIKENPKFEEAGVKAHYLI 732
Query: 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
G K +Q Q+ V+EKFR G N+++AT++ EEGLDI E ++VI + + +
Sbjct: 733 GAGHNSEFKPMTQNEQKDVIEKFRIGKINLLIATTVAEEGLDIPECNIVIRYGLVTNEIA 792
Query: 556 MIQRMGRT 563
M+Q GR
Sbjct: 793 MVQARGRA 800
Score = 48.9 bits (115), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 74/187 (39%), Gaps = 30/187 (16%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPD----GKIVFAAPSRP 164
+RDYQ + + AL N L+ LPTG GKT +A + + D GK++ P
Sbjct: 301 LRDYQMEVAQPALEGKNILLCLPTGSGKTRVAVYIAKDHLDKKKDAGEEGKVIVLVNKVP 360
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQSGT 221
LV Q + I ++G + SF K + V T Q+LE +Q+
Sbjct: 361 LVEQHFRKEFHPYLKHSYKVIGLSGMTQL--KISFPKVVKDNHVIICTAQILENALQNAE 418
Query: 222 ------CLMKYLVCLVIDEAHRATGNYAYCTAIREL------------MSVPV--QLRIL 261
+ ++IDE H Y +R M P+ Q +IL
Sbjct: 419 QDEEEGVQLSVFSLIIIDECHHTQKEAVYNNIMRRYLKQKMQNEKRRKMGKPLVPQPQIL 478
Query: 262 ALTATPG 268
LTA+PG
Sbjct: 479 GLTASPG 485
>gi|449457995|ref|XP_004146733.1| PREDICTED: dicer-like protein 4-like [Cucumis sativus]
Length = 1657
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 27/211 (12%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY---NFFRWFPDGKIVFAAPSRPLVM 167
R YQ + K AL N +V L TG GKT IA ++IY + R +G VF AP+ LV
Sbjct: 54 RKYQLELCKKALEENIIVYLGTGCGKTHIAILLIYELSHLIRSSQNGICVFLAPTVALVQ 113
Query: 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASF-WKTK----RVFFVTPQVLEKDIQSGTC 222
QQ + + + ++ + + S + + W+ + VF +TP++ +++
Sbjct: 114 QQAKVIEDSL----DFKVRVYCGGSKILNSHYDWEREMEEYEVFVMTPEIFLRNLYHCYI 169
Query: 223 LMKYLVCLVIDEAHRA--TGNYAYCTAIRELMSV--PVQLRILALTATP-----GSKQQT 273
M + L+ DE H A +++Y +R P + RI +TA+P QQ
Sbjct: 170 KMDCVELLIFDECHHAQVKSDHSYAEIMRVFYKANDPKRPRIFGMTASPVVGKGACHQQN 229
Query: 274 IQHIIDNL------YISTLEYRNESDQDVSS 298
+ I++L + ++E R E VSS
Sbjct: 230 LSRSINSLEKLLDAKVYSVENREELHAFVSS 260
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 440 QSPKLSKMLEVLVDHFKT-KDPKHSRVIIFSNFRGSVRDIMNALATIGDLV--KATEFIG 496
+ P SK L L+ + + + + IIF N R + L + L K +G
Sbjct: 396 EDPFFSKKLLRLIGILSSFRQQLNMKCIIFVNRIVIARSLSYILQNLNFLAYWKCDFLVG 455
Query: 497 QSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
S + S+K +L KFR+G N+++AT +GEEGLDI LVI FD +
Sbjct: 456 VHS--KLRSMSRKTMNHILTKFRSGELNLLIATKVGEEGLDIQTCCLVIRFDLPETVSSF 513
Query: 557 IQRMGRT 563
IQ GR
Sbjct: 514 IQSRGRA 520
>gi|340516882|gb|EGR47129.1| predicted protein [Trichoderma reesei QM6a]
Length = 1376
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 474 SVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGE 533
SV + + IG +V + + G+ KA QK L+ FR+G N+++ATS+ E
Sbjct: 392 SVNHTITSRYRIGTMVGTSNYAGRR--KAVYDFDQKTDYKDLQSFRSGKINLLIATSVLE 449
Query: 534 EGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
EG+D+ +LVICFD +P IQR GR K
Sbjct: 450 EGIDVPACNLVICFDTPTTPKSFIQRRGRARSK 482
Score = 46.2 bits (108), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 86/203 (42%), Gaps = 28/203 (13%)
Query: 110 VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV-FAAPSRPLVMQ 168
+R YQ + +L N +VA+ TG GKT +A + I KI+ F AP+ L Q
Sbjct: 1 MRAYQIEMLDKSLKQNVIVAMDTGSGKTQVAVLRIKKELEICDASKIIWFIAPTVSLCHQ 60
Query: 169 QIEACHNIVG--IPQEWTIDMTGQ-----ISPTKRASFWKTKRVFFVTPQVLEKDIQSGT 221
Q H+++ IP + + G P A T R+ TPQVL +
Sbjct: 61 Q----HDVLKLQIPAVPMMTLAGNSNIDAWGPDIWAILLDTVRIVISTPQVLLDALDHAY 116
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAI------RELM--SVPVQLRILALTATPGSKQQ- 272
+ L LV DE H G + R+L SVP +L LTATP + +
Sbjct: 117 LNLGLLALLVFDEVHNCIGRSPGGKIMLHHYHPRKLAGESVPA---VLGLTATPSIQSEL 173
Query: 273 ----TIQHIIDNLYISTLEYRNE 291
++ ++D +S +R+E
Sbjct: 174 ADIDALEWLMDARCVSPTLHRDE 196
>gi|225453660|ref|XP_002268369.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Vitis vinifera]
Length = 1971
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 84/198 (42%), Gaps = 23/198 (11%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK----IVFAAPSRPLV 166
R YQ + + A NT+ L TG GKTLIA ++I + F VF P PLV
Sbjct: 313 RQYQLDVLEQAKKRNTIAFLETGAGKTLIAVLLIRSVFNDLQGQNKKLLAVFLVPKVPLV 372
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW---------KTKRVFFVTPQVLEKDI 217
QQ E + +E T G FW +TK V +T Q+L +
Sbjct: 373 YQQAE-------VIRERTGYQVGHYCGEMGQDFWDARRWQREFETKHVLVMTAQILLNIL 425
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLR--ILALTATPGSKQQTI 274
+ M+ + L++DE H A + Y + E + P + R + +TA+P + +
Sbjct: 426 RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVS 485
Query: 275 QHIIDNLYISTLEYRNES 292
+ + I LE + +S
Sbjct: 486 SQVDCAIKIRNLESKLDS 503
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 72/139 (51%), Gaps = 8/139 (5%)
Query: 427 VKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG 486
V +++ +++ G +PK+ ++++L+ + +T+D R IIF + + A +
Sbjct: 699 VDVIIGAAVADGKVTPKVQSLVKILLKYQQTED---FRAIIFVERVVAALVLPKVFAELP 755
Query: 487 DL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
L +K IG ++ + + Q + KFR G ++VATS+ EEGLDI + ++V
Sbjct: 756 SLSFIKCASLIGHNNSQEMRTCQM---QDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVV 812
Query: 545 ICFDANVSPLRMIQRMGRT 563
I FD + L IQ GR
Sbjct: 813 IRFDLAKTVLAYIQSRGRA 831
>gi|359476600|ref|XP_002269915.2| PREDICTED: endoribonuclease Dicer homolog 2-like [Vitis vinifera]
Length = 1394
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 496 GQSSGKASKGQSQ--KVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
G +G AS+ QSQ +VQ A++E+FR G NVIV+TSI EEGLD+ +LVI FD + +
Sbjct: 421 GYIAGNASQLQSQSRRVQNALVEEFRKGMVNVIVSTSILEEGLDVQSCNLVIRFDPSATV 480
Query: 554 LRMIQRMGR 562
IQ GR
Sbjct: 481 CSFIQSRGR 489
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 19/172 (11%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI--YNFFRWFPDGKI-VFAAPSRPLVM 167
R YQ + A+ NT+V L TG GKTLIA +++ Y P I VF P LV
Sbjct: 25 RSYQIEALEKAIKQNTIVFLETGSGKTLIAIMLLRYYAHLLRKPSPFIAVFLVPKVVLVP 84
Query: 168 QQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTKR----VFFVTPQVLEKDIQSGT 221
QQ EA H + + W DM A+ W+ ++ V +TP +L ++
Sbjct: 85 QQAEAVKMHTDLKVGTYWG-DMGVDFWD---AATWRKEQDKHEVLVMTPAILLNGLRHSF 140
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL------RILALTATP 267
+ + L+ DE H A G Y ++E V+ RI +TA+P
Sbjct: 141 FKLDMIKVLIFDECHHARGKDPYACIMKEFYHEQVRSNNSNLPRIFGMTASP 192
>gi|297735235|emb|CBI17597.3| unnamed protein product [Vitis vinifera]
Length = 1340
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 496 GQSSGKASKGQSQ--KVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
G +G AS+ QSQ +VQ A++E+FR G NVIV+TSI EEGLD+ +LVI FD + +
Sbjct: 367 GYIAGNASQLQSQSRRVQNALVEEFRKGMVNVIVSTSILEEGLDVQSCNLVIRFDPSATV 426
Query: 554 LRMIQRMGR 562
IQ GR
Sbjct: 427 CSFIQSRGR 435
>gi|340514590|gb|EGR44851.1| predicted protein [Trichoderma reesei QM6a]
Length = 1416
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 441 SPKLS---KML-EVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATE--- 493
SP+LS K+L EVL D F + K R I+F R + + + G L+
Sbjct: 322 SPELSSKVKLLHEVLEDAFCKRQTK--RCIVFVQARSTAFILADLFQQPGMLIPGMTVGY 379
Query: 494 FIG-QSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
IG QS+ ++ S + Q L+KFR G N + ATS+ EEG+D+ E D+++ FD S
Sbjct: 380 MIGSQSTSSSAAYMSYREQIVSLQKFRYGETNCLFATSVAEEGIDVPECDVIVRFDLYSS 439
Query: 553 PLRMIQRMGRTGRK 566
++ IQ GR +K
Sbjct: 440 AIQYIQSKGRARQK 453
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 26/176 (14%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNF----FRWFPDGK----IVFAAPS 162
R+YQ + + A NT+V L TG GKTLIAA+++ + ++ DG F
Sbjct: 3 REYQVDLYERAKQENTIVVLDTGSGKTLIAALLMRHILQRELQYRADGHKHQYAFFLVEK 62
Query: 163 RPLVMQQIEACHNIVGIPQEWTI-----DMTGQISPTKRASFWKTK----RVFFVTPQVL 213
L QQ H ++ E+ I +MTG I + +W + F T Q+L
Sbjct: 63 VALCFQQ----HAVLTCNLEFPIGKFYGEMTGII---RTQEYWDKQFAEHMAFVCTAQIL 115
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRE--LMSVPVQLRILALTATP 267
+ G M + +V DEAH A ++ Y I++ L + + RIL +TA+P
Sbjct: 116 LDLLACGFISMSQINLIVFDEAHHAKKSHPYARIIKDHYLRAGNERPRILGMTASP 171
>gi|325190800|emb|CCA25291.1| RNAdependent RNA Polymerase1 (RDR1) putative [Albugo laibachii
Nc14]
Length = 768
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 58/130 (44%), Gaps = 31/130 (23%)
Query: 81 EGSSFDESLCHVQ--IDAEAAKT-------WIYPVNVP-------------------VRD 112
E FD S +Q ID E T IYP+ VP +RD
Sbjct: 174 EDKGFDVSKTTLQELIDQEGGITKRGDIERIIYPLQVPGVESIEARGADLMTCKMSQLRD 233
Query: 113 YQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEA 172
YQ + AL NTL+ LPTG GKTLIA V+ F P +VF P+RPLV QQ +
Sbjct: 234 YQVELVVGALVVNTLIYLPTGCGKTLIAIKVMEEFAALNPKRIVVFLVPTRPLVSQQAQY 293
Query: 173 CH---NIVGI 179
N+V I
Sbjct: 294 VRRESNLVAI 303
Score = 47.8 bits (112), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG 522
S+V + SN ++ + NA A+ G + T QS+ + +++ Q+ +LEKFR G
Sbjct: 485 SKVDMISNL---IQKMHNAYASRGIVFVRTR---QSARLIATWENE--QRPILEKFRQGQ 536
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH 567
+++AT++ EEG+D+ E VI FD +IQ GR K+
Sbjct: 537 IRLLIATNVLEEGIDVPECSFVIRFDGVAGVKSLIQSRGRARCKY 581
>gi|378823723|ref|ZP_09846322.1| putative ATP-dependent RNA helicase RhlE [Sutterella parvirubra YIT
11816]
gi|378597462|gb|EHY30751.1| putative ATP-dependent RNA helicase RhlE [Sutterella parvirubra YIT
11816]
Length = 639
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 13/120 (10%)
Query: 449 EVLVDHFKTKDPKH---SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKG 505
+VL+D +T+ P+ ++V++F +NA T L + E +G ++
Sbjct: 238 DVLIDMLRTRGPEGGPLTQVLVF----------VNAKITCRRLARTLERVGINADAIHGD 287
Query: 506 QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
++Q+ +Q L+ F++G +V+VAT + GLDI E+ VI +D S + R+GRTGR
Sbjct: 288 KTQEERQVALDGFKSGAIHVLVATDVAARGLDIKELPFVINYDVPYSAEDYVHRIGRTGR 347
>gi|147833654|emb|CAN77284.1| hypothetical protein VITISV_043738 [Vitis vinifera]
Length = 1296
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 496 GQSSGKASKGQSQ--KVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
G +G AS+ QSQ +VQ A++E+FR G NVIV+TSI EEGLD+ +LVI FD + +
Sbjct: 323 GYIAGNASQLQSQSRRVQNALVEEFRKGMVNVIVSTSILEEGLDVQSCNLVIRFDPSATV 382
Query: 554 LRMIQRMGR 562
IQ GR
Sbjct: 383 CSFIQSRGR 391
>gi|224109196|ref|XP_002315119.1| dicer-like protein [Populus trichocarpa]
gi|222864159|gb|EEF01290.1| dicer-like protein [Populus trichocarpa]
Length = 1408
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKI-VFAAPSRPLVM 167
R YQ + AL NT+V L TG GKTLIA +++ ++ P I VF P LV
Sbjct: 23 RSYQLEALEQALKQNTIVFLETGSGKTLIATMLLRSYAHLLRKPSRFIAVFLVPEVFLVR 82
Query: 168 QQ--IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQSGT 221
QQ + H + + W DM S A+ WK + V +T Q+L ++ G
Sbjct: 83 QQAGVVRMHTDLNVGMYWG-DMGIDFS---HAATWKQEIDKHEVLVMTHQILLNGLRQGY 138
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAI-----RELMSVPVQL-RILALTAT 266
+ ++ L+ DE H A GN+ Y + REL S L RI +TA+
Sbjct: 139 FKLDFIKVLIFDECHHARGNHPYACIMTEFFHRELRSGHHDLPRIFGMTAS 189
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 492 TEFI-GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
T++I G +SG S Q++++Q ++E+FR G N+IVATSI EEGLD+ +LVI FD
Sbjct: 419 TKYIAGNNSGLQS--QTRQMQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPP 476
Query: 551 VSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVS 591
S IQ GR R + + K E +E Y+S
Sbjct: 477 SSVSSFIQSRGR-ARMQNSDYLLMVKTEDSTTHSRLENYLS 516
>gi|301607421|ref|XP_002933320.1| PREDICTED: interferon-induced helicase C domain-containing protein
1-like [Xenopus (Silurana) tropicalis]
Length = 998
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 125/525 (23%), Positives = 215/525 (40%), Gaps = 96/525 (18%)
Query: 108 VPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIY-NFFRWFPDGKI---VFAAPS 162
+ +R+YQ + K AL N ++ LPTG GKT +A + + + +G++ +
Sbjct: 295 ITLRNYQMEVAKPALEGKNIIICLPTGSGKTRVAVYITREHLCKRREEGRLAKAIVLVNK 354
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK-------RASFWKTKR---VFFVTPQV 212
PLV Q +E+ + TK + SF K + V T Q+
Sbjct: 355 VPLVEQHYR---------REFYPFLKDHYQVTKISGDSQLKNSFHKVVQEHDVVICTAQI 405
Query: 213 LE-------KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR------ 259
LE +D + G L + + ++IDE H + Y + + +Q +
Sbjct: 406 LENSLIQAAEDEEEGVQLSDFSL-IIIDECHHTQKDAVYNNIMIRYIKKKMQNKRNSKME 464
Query: 260 --------ILALTATPG-----SKQQTIQHII------DNLYISTLEYRNES-DQDVSSY 299
IL LTA+PG + +++ +HI+ D I T++ E + V
Sbjct: 465 KAQVPLPQILGLTASPGVGGAKNIKKSEEHILRICANMDAFKIMTVQENAEQLRKQVKDP 524
Query: 300 VHNRKI--ELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSR 357
KI E + G + EI +I E + Y + D+ + S +
Sbjct: 525 YKEVKISDEKKKNPFGDKLKEIMGKIEEYSKLYPTS----------DHGSQSYEQWVIQT 574
Query: 358 DKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEK-----LKQG 412
DK + + Y AL IR S +R YE EEK L +G
Sbjct: 575 DKTAAKEGKRKEHVCAEHLRKYNDALQINDTIRMTDSLIHLRKFYE--EEKKRKILLNEG 632
Query: 413 S--FARFMSKNEDIRKVKLLM--QQSISHGAQSPK-----LSKMLEVLVDHFKTKDPKHS 463
S A + D + L ++ ++ A++PK L + L++ F T++ + +
Sbjct: 633 SEHVAPLNIEETDRFLIDLFYDNEKELTAIAKNPKYENENLYALRSSLLEEF-TRNGQ-A 690
Query: 464 RVIIFSNFRGSVRDIMNALA------TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEK 517
R IIF+ R S + ++ +G ++++ IG K +Q Q+ ++ K
Sbjct: 691 RGIIFTKTRQSAVALNQWISDNEKFTEVG--IRSSYLIGAGHNSDFKPMTQNEQKQIIHK 748
Query: 518 FRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
F G N++VATS+ EEGLDI E ++VI + + + M+Q GR
Sbjct: 749 FSTGELNLLVATSVAEEGLDIKECNVVIRYGLVTNEIAMVQARGR 793
>gi|224101241|ref|XP_002312197.1| dicer-like protein [Populus trichocarpa]
gi|222852017|gb|EEE89564.1| dicer-like protein [Populus trichocarpa]
Length = 1468
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 17/127 (13%)
Query: 445 SKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKA--------TEFI- 495
SK+L ++ + +D K R I+F V ++ A+ L K T++I
Sbjct: 421 SKILCLVESLLQYRDLKEIRCIVF------VERVITAIVLESLLSKLLPKHGSWKTKYIA 474
Query: 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
G +SG S Q++K+Q ++E+FR G N+IVATSI EEGLD+ +LVI FD + +
Sbjct: 475 GNNSGLQS--QTRKIQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPSATVSS 532
Query: 556 MIQRMGR 562
IQ GR
Sbjct: 533 FIQSRGR 539
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI--YNFFRWFPDGKI-VFAAPSRPLVM 167
R YQ + AL NT+V L TG GKTLIA +++ Y + P I VF P LV
Sbjct: 23 RSYQLEALEKALKHNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSRFIAVFLVPQVVLVR 82
Query: 168 QQIEAC--HNIVGIPQEWTIDMTGQIS-PTKRASFWKTK----RVFFVTPQVLEKDIQSG 220
QQ A H + + W G++ A+ WK + V +TPQ+L ++
Sbjct: 83 QQAGAVEMHTDLKVGMYW-----GEMGVDFWNAATWKKEIEKHEVLVMTPQILLNGLRHS 137
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL------RILALTATP 267
+ + +++DE H G + Y + + E ++ RI +TA+P
Sbjct: 138 FFKLDLIKVMIVDECHHTRGKHPYASIMTEFFHCELKSGHHDLPRIFGMTASP 190
>gi|391345092|ref|XP_003746827.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
Length = 1446
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 109 PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYN-FFRWFPDG---KIVFAAPSRP 164
P RDYQ + A+ N ++ L TG GKT ++ ++I + PDG + VF AP+ P
Sbjct: 24 PARDYQIELLLKAVERNIIICLGTGTGKTFVSVLLIKELLYETRPDGGNRRSVFLAPTVP 83
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQSG 220
LV QQ + + E G + S W+ + V + PQV +
Sbjct: 84 LVKQQAAVIK--IHVDAEVGCYFGGDTVDNWQESEWRREIEKNNVLVMVPQVFSNILNQN 141
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRE---LMSVPVQLRILALTATPGSKQ 271
+ + +V DE H ATG Y ++ M + RIL LTA+ +K+
Sbjct: 142 FINLDQINLMVFDECHAATGQSCYVQIMQNHYVKMGPEKRPRILGLTASVLNKK 195
Score = 43.9 bits (102), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
+ + LE FR G +NV+VATS+ EEG+D+ + +L++ + +++ +Q GR K
Sbjct: 438 EGSTLENFRTGVHNVLVATSVIEEGVDVPQCNLIVRMNGDMNFRSYVQGRGRARAK 493
>gi|268536796|ref|XP_002633533.1| C. briggsae CBR-DRH-1 protein [Caenorhabditis briggsae]
Length = 1043
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 6/135 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV-RDIMNALATIGDLVKATEF 494
S A++P + K+ + +VD + + S + + + + ++ +I+N T+ L +E+
Sbjct: 681 SGTAENPMIEKVEQFIVDQNEQRGDSRSIIFVRTRYEATILNEILNKRETLERLGIKSEW 740
Query: 495 IG----QSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
I +S A S++ Q L KF G V+VATS+ EEGLD+ E +LVI ++
Sbjct: 741 ISGLNKSTSSSADISASKQKQMEKLRKFATGEIRVLVATSVAEEGLDVAECNLVIKYNYA 800
Query: 551 VSPLRMIQRMGRTGR 565
+ + +QR GR GR
Sbjct: 801 TNEIAHVQRRGR-GR 814
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 20/163 (12%)
Query: 110 VRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPSRP 164
+R YQ + + AL NT+V PTG GKT+IAA +I N F R K +F P+
Sbjct: 293 LRRYQLELCQVALRGENTIVTAPTGSGKTVIAANIIKNHFETRDRNGQRFKALFMTPNSM 352
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL----------- 213
++ QQ ++ + + + I P + A +TK + TPQ++
Sbjct: 353 ILKQQSDSISSYLDHSYQVQIVQGADNLPVRNAV--QTKDLIVATPQMIVNLCNEHRDVL 410
Query: 214 --EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV 254
E +I + + DE H N Y +RE ++
Sbjct: 411 KTENEIGIEQFFLSTFTIIFFDECHNTMKNTPYANIMREYHTL 453
>gi|358396694|gb|EHK46075.1| hypothetical protein TRIATDRAFT_292263 [Trichoderma atroviride IMI
206040]
Length = 1456
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLV---KATEFIGQ 497
SPK+ + ++L + F + K R I+F R + + + G + + IG
Sbjct: 350 SPKVKTLHQILGNAFSQRLSK--RCIVFVEQRTTAFLLADLFKQPGMSIPGMRTAYMIGS 407
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
++ + S K Q L+KF+ G +N + ATS+ EEG+D+ E D+++ FD VS ++ I
Sbjct: 408 NATSGAANMSLKDQVVSLQKFKRGEFNCLFATSVAEEGIDVPECDVIVRFDLCVSAIQYI 467
Query: 558 QRMGR 562
Q GR
Sbjct: 468 QSKGR 472
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 73/174 (41%), Gaps = 23/174 (13%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVV--------IYNFFRWFPDGKIVFAAPS 162
R+YQ + + A NT+V L TG GKTLIAA++ I N + + F
Sbjct: 50 REYQIDLYERAKNENTIVVLDTGTGKTLIAALLLRRVLEVEIENREKGYTPKSAFFIVEK 109
Query: 163 RPLVMQQIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTK----RVFFVTPQVLEKDI 217
L QQ + + P DM G I + FW+ + F T Q L
Sbjct: 110 VALCFQQYAVLTSNLEFPIGKIFGDMNGDIGDPE---FWRQQFSENMAFVCTAQTLLSMF 166
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV----QLRILALTATP 267
+G M + LV DEAH N+AY R + P + RIL +TA+P
Sbjct: 167 GAGFISMDRVNLLVFDEAHHTKKNHAYA---RIMEYYPRWENERPRILGMTASP 217
>gi|296089027|emb|CBI38730.3| unnamed protein product [Vitis vinifera]
Length = 1474
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK----IVFAAPSRPLV 166
R YQ + + A NT+ L TG GKTLIA ++I + F VF P PLV
Sbjct: 254 RQYQLDVLEQAKKRNTIAFLETGAGKTLIAVLLIRSVFNDLQGQNKKLLAVFLVPKVPLV 313
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW---------KTKRVFFVTPQVLEKDI 217
QQ E + +E T G FW +TK V +T Q+L +
Sbjct: 314 YQQAE-------VIRERTGYQVGHYCGEMGQDFWDARRWQREFETKHVLVMTAQILLNIL 366
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLR--ILALTATP 267
+ M+ + L++DE H A + Y + E + P + R + +TA+P
Sbjct: 367 RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASP 419
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 72/139 (51%), Gaps = 8/139 (5%)
Query: 427 VKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG 486
V +++ +++ G +PK+ ++++L+ + +T+D R IIF + + A +
Sbjct: 640 VDVIIGAAVADGKVTPKVQSLVKILLKYQQTED---FRAIIFVERVVAALVLPKVFAELP 696
Query: 487 DL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
L +K IG ++ + + Q + KFR G ++VATS+ EEGLDI + ++V
Sbjct: 697 SLSFIKCASLIGHNNSQEMRTCQM---QDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVV 753
Query: 545 ICFDANVSPLRMIQRMGRT 563
I FD + L IQ GR
Sbjct: 754 IRFDLAKTVLAYIQSRGRA 772
>gi|90085300|dbj|BAE91391.1| unnamed protein product [Macaca fascicularis]
Length = 406
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Query: 447 MLE-VLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKATEFIGQSSGK 501
MLE +L F++ D R IIF+ R S ++ L L ++A IG +
Sbjct: 1 MLEKILQRQFRSSDS--PRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIRAQLLIGAGNSS 58
Query: 502 ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMG 561
S +Q+ QQ V+ KFR G N++VATS+ EEGLDI + ++V+ + + + M+Q G
Sbjct: 59 QSTHMTQRDQQEVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVVRYGLLTNEISMVQARG 118
Query: 562 RT 563
R
Sbjct: 119 RA 120
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 483 ATIGDLVKA--TEFIGQSSGKASKG--QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDI 538
A I DL +A T+ Q++ + S+ +Q+ QQ V+ KFR G N++VATS+ EEGLDI
Sbjct: 168 AKIQDLQQAALTKRAAQAAQRESQSTHMTQRDQQEVIRKFRDGTLNLLVATSVAEEGLDI 227
Query: 539 MEVDLVICFDANVSPLRMIQRMGRT 563
+ ++V+ + + + M+Q GR
Sbjct: 228 PQCNVVVRYGLLTNEISMVQARGRA 252
>gi|322700444|gb|EFY92199.1| Dicer-like protein 2 [Metarhizium acridum CQMa 102]
Length = 1441
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
+E IGQSS Q A L+ FR+G N+++ATS+ EEG+D+ ++VICFD
Sbjct: 488 SELIGQSSD----------QMAALQSFRSGKINILIATSVLEEGIDVPACNMVICFDHPA 537
Query: 552 SPLRMIQRMGRTGRKHDGRI 571
+P +QR GR K I
Sbjct: 538 TPKSFVQRRGRARMKESKLI 557
Score = 41.2 bits (95), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 77/195 (39%), Gaps = 19/195 (9%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQ 169
R YQ + +L N +V + TG GKT +A + I R PD I F AP+ L QQ
Sbjct: 85 RAYQLEMLDQSLKQNVIVVMDTGSGKTQVAVLRIKAELDRSAPDKIIWFLAPTVALCGQQ 144
Query: 170 IEACH-NIVGIPQEWTIDMTGQISPTKRASFWKT----KRVFFVTPQVLEKDIQSGTCLM 224
+ +P + I Q+ T A W T RV T QVL + +
Sbjct: 145 FDVIRLQAASVPMK-LITGNDQVD-TWSADTWDTILDGVRVVVSTYQVLLDALCHAFINI 202
Query: 225 KYLVCLVIDEAHRATGNYA---YCTAIRELMSVPVQLRILALTATPGSKQ-----QTIQH 276
L ++ DE Y S+P IL +TATP + + ++
Sbjct: 203 DRLSLIIFDEGKHPGSKIMTDFYHRNKHTAESIP---NILGITATPSMTEDLENMEILEA 259
Query: 277 IIDNLYISTLEYRNE 291
++D IS +R E
Sbjct: 260 VLDAKCISPTRHREE 274
>gi|357448551|ref|XP_003594551.1| Endoribonuclease Dicer [Medicago truncatula]
gi|355483599|gb|AES64802.1| Endoribonuclease Dicer [Medicago truncatula]
Length = 1418
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 9/172 (5%)
Query: 431 MQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSN--FRGSVRDIM-NALATIGD 487
M ++ G + K+ ++E L+++ + R I+F V +++ NAL +
Sbjct: 397 MNSNLEMGLLTSKVCCLIECLLEY---RGLTEMRCIVFVERVIAAIVLEVLLNALLPKYN 453
Query: 488 LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
+A +FI +G + Q++K+Q ++E+FR G N+IVATSI EEGLD+ +LVI F
Sbjct: 454 SWRA-KFIA-GTGSKLQNQTRKIQNEIVEEFRKGLVNIIVATSILEEGLDVQSCNLVIRF 511
Query: 548 DANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKDD 599
D + + +Q GR ++ I + K +E+Y+ G+ ++ +
Sbjct: 512 DPSPTVCSFVQSRGRARMRNSDYILMV-KSGDAVTRSRLEKYLDGGQMMRKE 562
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 81/181 (44%), Gaps = 20/181 (11%)
Query: 103 IYPVNVP-VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI--YNFFRWFPDGKI-VF 158
I P +P R YQ + A+ NT+V L TG GKTLIA +++ Y + P I VF
Sbjct: 55 IRPNALPFARSYQLEALEKAIRENTIVYLETGSGKTLIAIMLLRSYAYHLRKPSPYIAVF 114
Query: 159 AAPSRPLVMQQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQV 212
P LV QQ EA H + I W DM WK + V +TP +
Sbjct: 115 LVPKVVLVSQQAEALRNHTDLKIGMYWG-DMGVDYWD---GDVWKGEMEKHEVLVMTPAI 170
Query: 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRE-----LMSVPVQL-RILALTAT 266
L ++ + + L++DE H A G + Y + E L S +L RI +TA+
Sbjct: 171 LLSCLRHSFIKLSMIKVLIMDECHHAAGRHPYACIMTEFYHHQLRSGITELPRIFGMTAS 230
Query: 267 P 267
P
Sbjct: 231 P 231
>gi|340373457|ref|XP_003385258.1| PREDICTED: endoribonuclease Dicer-like [Amphimedon queenslandica]
Length = 1520
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 16/143 (11%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS---VRDIMNALATIGDLVKATEFIG 496
SPK SK+LE+L++ ++ + I+F R + + I+ + G ++ + +G
Sbjct: 339 HSPKFSKLLEILLN-LRSSQAEDFCGIVFVEQRMTAMCLSQIITEIKLPG--IRCSFIVG 395
Query: 497 Q--SSGK-------ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
SSGK S G + K QQ VL+KFR+G N+++ATS+ EEGLD+ + ++VI +
Sbjct: 396 HASSSGKIMEKKVSGSGGMNAKKQQEVLKKFRSGTLNLLIATSVVEEGLDVRKCNVVIRY 455
Query: 548 DANVSPLRMIQRMGRTGRKHDGR 570
D + +Q GR R D R
Sbjct: 456 DFPKTFQSHVQSKGR-ARAKDSR 477
Score = 47.8 bits (112), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 72/175 (41%), Gaps = 25/175 (14%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNF-------FRWFPDGK-IVFAAPS 162
R YQ + +A+ NT+V L TG GKT IA ++I F FR P+ K +F +
Sbjct: 7 RSYQLELLDSAIEKNTIVLLGTGAGKTFIAVLLIKQFSHEILDSFRDNPNSKRTIFLVTT 66
Query: 163 RPLVMQQIEACH-----NIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217
LV QQ N+ E +D TK S + + +T Q+ +
Sbjct: 67 VALVTQQANYIRTHIDLNVGTYYGEMGVD---AWRLTKWNSELECNHILVMTRQIFLDML 123
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAI------RELMSVPVQLRILALTAT 266
G M + ++ DE H A N Y + R + + P IL LTA+
Sbjct: 124 SHGFISMSRVNLIIFDECHHAVKNDPYVQIMKHYNDERYMCNKP---HILGLTAS 175
>gi|281338729|gb|EFB14313.1| hypothetical protein PANDA_020687 [Ailuropoda melanoleuca]
Length = 499
Score = 63.2 bits (152), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 9/142 (6%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKATEFI 495
++PKL + ++L + F +KD R IIF+ R S ++ L L ++A I
Sbjct: 338 ENPKLEMLEQILREQFGSKD--SPRGIIFTQTRQSTHSLLLWLQQQPGLQTMDIRADLLI 395
Query: 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
G + + +Q+ QQ V+ KFR G +++VA+ + EEG D+ + ++V+C+ ++ +
Sbjct: 396 GAGTSSQNTHMTQRDQQEVIRKFRVGTLHLLVASRVAEEGPDVPQCNVVVCYGL-LTEIS 454
Query: 556 MIQRMGRTGRKHDGRIPHIFKP 577
+Q G + G + IF P
Sbjct: 455 TVQARAVPGLEKSGYL--IFAP 474
>gi|156032684|ref|XP_001585179.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980]
gi|154699150|gb|EDN98888.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1867
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI---GDLVKATEFIGQ 497
S K+ +L +L D F+ P + + I+F R + R + + L+T +K +G
Sbjct: 759 STKVVALLSILKDRFQR--PTNDKCIVFVRERYTARLLASLLSTPEAGTPFLKVAPLVGT 816
Query: 498 SSGKASKGQ-SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
+S A + + + Q + FR G N ++ATS+ EEGLDI + +LV+ FD + ++
Sbjct: 817 TSTSAGEMHITFRSQTLTMHDFRNGKINCLIATSVAEEGLDIPDCNLVVRFDLYSTVIQY 876
Query: 557 IQRMGRTGRKHDGRIPHI 574
IQ GR R + R H+
Sbjct: 877 IQSRGR-ARHVNSRYYHM 893
>gi|340501985|gb|EGR28708.1| snrnp protein, putative [Ichthyophthirius multifiliis]
Length = 756
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 17/145 (11%)
Query: 431 MQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK 490
++Q + A+ K S++ +L D K P +IIF+N + +V L K
Sbjct: 575 IEQIVEFIAEGQKKSRLQNILKDQ---KPP----IIIFANEKNAVEK----------LQK 617
Query: 491 ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
E G +S G++Q+ ++A ++ F+ G Y+++VAT +G GL + V +VI FDA
Sbjct: 618 ILEKWGWNSVIYHGGRTQQQREAAVDGFKKGKYDILVATDLGSRGLHVDGVKMVINFDAP 677
Query: 551 VSPLRMIQRMGRTGRKHDGRIPHIF 575
+ + R GRTGR I + F
Sbjct: 678 KNIKDFVHRTGRTGRAGKRGIAYTF 702
>gi|426221009|ref|XP_004004704.1| PREDICTED: interferon-induced helicase C domain-containing protein
1 [Ovis aries]
Length = 1023
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Query: 439 AQSP-----KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGD 487
AQ+P KL K+ +++ + ++ +R IIF+ R S + + + +G
Sbjct: 688 AQNPEHENEKLIKLRNTIMEQY-SRTEGSARGIIFTKTRQSAYALSQWITENEKFSEVG- 745
Query: 488 LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
VKA IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI +
Sbjct: 746 -VKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRY 804
Query: 548 DANVSPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 805 GLVTNEIAMVQARGR 819
>gi|76609700|ref|XP_615590.2| PREDICTED: interferon-induced helicase C domain-containing protein
1 [Bos taurus]
gi|297471684|ref|XP_002685384.1| PREDICTED: interferon-induced helicase C domain-containing protein
1 [Bos taurus]
gi|296490601|tpg|DAA32714.1| TPA: interferon induced with helicase C domain 1-like [Bos taurus]
Length = 1021
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Query: 439 AQSP-----KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNAL------ATIGD 487
AQ+P KL K+ +++ + ++ +R IIF+ R S + + + +G
Sbjct: 686 AQNPEHENEKLIKLRNTIMEQY-SRTEGSARGIIFTKTRQSAYALSQWIIENEKFSEVG- 743
Query: 488 LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
VKA IG K +Q Q+ V+ KFR G N+++AT++ EEGLDI E ++VI +
Sbjct: 744 -VKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRY 802
Query: 548 DANVSPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 803 GLVTNEIAMVQARGR 817
>gi|281422527|ref|ZP_06253526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
DSM 18205]
gi|281403351|gb|EFB34031.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
DSM 18205]
Length = 568
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 13/149 (8%)
Query: 445 SKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASK 504
++ + ++ D FK D K RVI+FS + V+ + +L + IG + G
Sbjct: 230 TQKMTIIKDIFKAGDLK--RVIVFSGSKFKVKQLAASL----------QQIGVNCGAMHS 277
Query: 505 GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTG 564
Q + V+ KF++G Y+V+VAT I G+DI ++++VI +D + R+GRT
Sbjct: 278 DLEQAERDDVMFKFKSGQYDVLVATDIVARGIDIDDIEMVINYDVPHDTEDYVHRIGRTA 337
Query: 565 RKH-DGRIPHIFKPEVQFVELSIEQYVSR 592
R + DGR E Q+ IE+++ +
Sbjct: 338 RANRDGRAITFVSEEDQYWFQQIEKFLEK 366
>gi|407917735|gb|EKG11039.1| Ribonuclease III [Macrophomina phaseolina MS6]
Length = 1216
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 432 QQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT---IGDL 488
Q+ I H SPK+ ++++L+ ++ I+F R +V + + L+ + DL
Sbjct: 78 QKDILHQNLSPKMQYLIDLLLAEWREGFTG----IVFVEQRATVAAMDHVLSNHPQLRDL 133
Query: 489 VKATEFIGQSSG---KASKGQSQKV----QQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541
F+G S K+ G V QQ L++FR G N+IVATS+ EEG+D+
Sbjct: 134 FNIGTFVGTSVTVRRKSHLGIGDLVEVRHQQQTLDEFRDGKKNLIVATSVLEEGIDVSNC 193
Query: 542 DLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+VICF+ + IQR GR RK D +
Sbjct: 194 HIVICFEPPKNLKSFIQRRGR-ARKQDSKF 222
>gi|83772763|dbj|BAE62891.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391869364|gb|EIT78563.1| dsRNA-specific nuclease Dicer [Aspergillus oryzae 3.042]
Length = 1374
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG-DLVKATEFIG 496
G SPK+ + + L+ +F+ P ++ I+F+ R + + + + +T+ ++ IG
Sbjct: 344 GELSPKVQLLRQKLIKYFE--HPTKTKCIVFTQKRYTAKMLFDLFSTLEIPYLRPGVLIG 401
Query: 497 QSSGK-ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
SG S + Q L KFR+G N + ATS+ EEGLDI + +LV+ FD + ++
Sbjct: 402 VRSGDIVGMNVSFRQQFLALVKFRSGEINCLFATSVAEEGLDIPDCNLVVRFDLYNTLIQ 461
Query: 556 MIQRMGR 562
+Q GR
Sbjct: 462 YVQSRGR 468
>gi|295697398|ref|YP_003590636.1| helicase domain-containing protein [Kyrpidia tusciae DSM 2912]
gi|295413000|gb|ADG07492.1| helicase domain protein [Kyrpidia tusciae DSM 2912]
Length = 1314
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 18/145 (12%)
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSR---VIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ 497
S K+ ++L +L KDP R +IF+ F ++RDI++ L ++ IG
Sbjct: 771 SSKMKRLLGILNGR---KDPVSGRFRQTVIFTRFYDTLRDILSHLRQAAPRMR----IGT 823
Query: 498 SSGKASK-------GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
SGK ++ G+ + ++ + E+F G ++++ T EGL++ D++I FD
Sbjct: 824 YSGKGAEWFAPDAGGRGEADREEIKERFLQGEIDILLCTDAAAEGLNLQTADMLINFDLG 883
Query: 551 VSPLRMIQRMGRTGRKHDGRIPHIF 575
+P+++ QR+GR R R P IF
Sbjct: 884 WNPMKIEQRIGRIDRIGQ-RHPEIF 907
>gi|221041528|dbj|BAH12441.1| unnamed protein product [Homo sapiens]
Length = 578
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VKA 491
+HG ++PKL + ++L F + + R IIF+ R S ++ L L ++A
Sbjct: 336 THGPENPKLEMLEKILQRQFSSSNS--PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 393
Query: 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551
IG + S +Q+ QQ V++KF+ N++VATS+ EEGLDI ++V+ +
Sbjct: 394 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDRTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 453
Query: 552 SPLRMIQRMGR 562
+ + M+Q GR
Sbjct: 454 NEISMVQARGR 464
Score = 45.1 bits (105), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 25/174 (14%)
Query: 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168
+R YQ+ + AL N ++ LPTG GKT AA V K+ LV Q
Sbjct: 3 LRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKV-------HLVTQ 55
Query: 169 QIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKTKR---VFFVTPQVLEKDIQS----G 220
E + + WT+ ++G + P RA F R + T ++L+ + S
Sbjct: 56 HGEEFRRM--LDGRWTVTTLSGDMGP--RAGFGHLARCHDLLICTAELLQMALTSPEEEE 111
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPGS 269
+ +V+DE H + Y + + + + +Q ++L LTA+PG+
Sbjct: 112 HVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGT 165
>gi|156393452|ref|XP_001636342.1| predicted protein [Nematostella vectensis]
gi|156223444|gb|EDO44279.1| predicted protein [Nematostella vectensis]
Length = 672
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 113/482 (23%), Positives = 210/482 (43%), Gaps = 57/482 (11%)
Query: 108 VPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPD-GKIVFAAPSRPL 165
+ +R YQ + + A+ NT++ PT GKT +A + D K++F ++ L
Sbjct: 1 LKLRKYQEELAEPAIQGYNTVICAPTNSGKTFVAMEIAKQHLDKHSDHAKVIFIVSTQNL 60
Query: 166 VMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-KTKRVFFVTPQVLEKDIQSGT--- 221
V+QQ + + D++G S F K V +T Q+L +Q+
Sbjct: 61 VLQQRQRFE--AYLSNYAVCDISGVNSTEIPLKFLLKANDVVVLTAQILLNALQNKNELS 118
Query: 222 -CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL-----RILALTATPG-SKQQTI 274
+ L L+ DE H N++Y + + + + ++ +++ LTA+ G K T+
Sbjct: 119 SISLSDLSLLIFDECHHTNKNHSYNKIMHQYIDLKLKKHKGLPQVVGLTASLGVGKSNTV 178
Query: 275 Q----HII------DNLYISTL-EYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRI 323
+ HI+ D I+T+ E NE V+ V RK+ M + +
Sbjct: 179 ENAHKHILQICANMDAQKINTVRENVNELKDCVTGGVPERKV------MDKIEKAAKKSL 232
Query: 324 WEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK--FGEVEAYFG 381
++ +P +R+S Q R + +++++ +QA L Q+ ++ Y
Sbjct: 233 PDLQQPPCNRVSQ----QYRQW-----IEVIS-----KQACALGLRQLTTYIEQLRQYHL 278
Query: 382 ALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQS 441
AL+T +R + ++ ++ L+E +F ++ + + +I HG
Sbjct: 279 ALLTNDTVRMKDALTCLKEYFDTLDE-------TKFTENDKLLHNLYHKNHVAI-HGETP 330
Query: 442 PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLV-KATEFIGQSSG 500
+ L+ L+ F D K S+ I+F+ RGS ++ + DL K G
Sbjct: 331 NPKLEELKKLLLGFHENDSKESKGILFTVTRGSTVGLVEWIKESEDLKHKFRPKALVGGG 390
Query: 501 KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560
G SQ+ Q+ ++E+F+ G N+++ATS+ EEGLDI + VI +D + + Q
Sbjct: 391 DGVVGMSQQEQELIIEEFKKGVVNILIATSVAEEGLDIKDCSFVIRYDTYGNEISSTQAR 450
Query: 561 GR 562
GR
Sbjct: 451 GR 452
>gi|390331519|ref|XP_780474.2| PREDICTED: probable ATP-dependent RNA helicase DDX58-like
[Strongylocentrotus purpuratus]
Length = 710
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 114/496 (22%), Positives = 203/496 (40%), Gaps = 47/496 (9%)
Query: 127 LVALPTGLGKTLIA-AVVIYNFFRWFPDG-------KIVFAAPSRPLVMQQIEACHNIVG 178
+V LPTG GKT +A A++ F P G K VF PLV QQ + C +
Sbjct: 1 MVVLPTGTGKTEVAIALISRRFLARNPVGATNHRKQKSVFVVNKVPLVKQQKDRCLKYLR 60
Query: 179 IPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKY--LVCLVIDEAH 236
E +++ + +T QVL ++ ++ + LV+DE H
Sbjct: 61 GMCEVAGASGEELNHVPLDIVIDANDITVLTAQVLVNALKDENIKLELSDIALLVLDECH 120
Query: 237 RATGNYAYCTAI---REL-MSVPVQLR--ILALTATPG---SKQQT-----IQHIIDNL- 281
+ Y + R+L ++ P R IL +TA+PG SK I + NL
Sbjct: 121 HCQKSNPYNVLMAMYRDLKLNTPKLPRPQILGMTASPGVGDSKNMVQAECYITKLCANLD 180
Query: 282 --------YISTLEYRNESDQDVSSYVHNRKIE---LIEVEMGQEAVEINNRIWEVIRPY 330
Y L+ ++ S ++ V R +E E+ + E +E ++ E R
Sbjct: 181 CIISRPKIYADKLKAKSNSPKETQIIVKGRPLEDPYFREISVIMERIEDKIKLVEAGRAL 240
Query: 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI-TLYHI 389
+ +R ++N + K ++ + + +Y +L+
Sbjct: 241 VEGNDEFTKMVSRRGAQSYEQGVVNLKKKIQETIENEDDRRELMACVSYLREYNNSLFIN 300
Query: 390 RRLLSSHGIRPAYEML--EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKM 447
R +S I + + EE+ A + K K++ L + + H + +P L+++
Sbjct: 301 RDARTSDAISYMEDYINEEERSSPSGPADMILKKMFRDKLQTLNRIANLHMSINPVLNEL 360
Query: 448 LEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKG 505
+ L + + S IIF+ R S + ++ L DL +KA IG ++G
Sbjct: 361 GKQLKKAYAENEESLS--IIFTKTRASAKALVKWLNEDPDLNGIKADMLIGS----GNQG 414
Query: 506 QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
+ Q L+ F+ ++V TS+ EEGLDI E ++V ++ S + +Q GR+
Sbjct: 415 MTSTEQNRNLQLFKDKKCRILVTTSVAEEGLDIRECNMVFRYNYVTSDIGHVQTKGRSRA 474
Query: 566 KHDGRIPHIFKPEVQF 581
K +G+I I ++Q
Sbjct: 475 KFNGKIFVIVNSDLQL 490
>gi|224088236|ref|XP_002308384.1| dicer-like protein [Populus trichocarpa]
gi|222854360|gb|EEE91907.1| dicer-like protein [Populus trichocarpa]
Length = 1588
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLV--KATEFIGQS 498
S KL +++E+L + D K I+F N + R + + L + L K +G
Sbjct: 413 SRKLLRLIEILSNFRLQPDMK---CIVFVNRIVTARSLSHILQNLKFLTSWKCDFLVGVH 469
Query: 499 SGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558
SG K S+K +LE+FR G N+++AT +GEEGLDI LVI FD + IQ
Sbjct: 470 SGL--KSMSRKTMNVILERFRTGKLNLLLATKVGEEGLDIQTCCLVIRFDLPETVASFIQ 527
Query: 559 RMGR 562
GR
Sbjct: 528 SRGR 531
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 84/190 (44%), Gaps = 26/190 (13%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY---NFFRWFPDGKIVFAAPSRPLVM 167
R YQ + K AL N +V L TG GKT IA ++IY + R VF AP+ LV
Sbjct: 50 RKYQLELCKKALEENIIVYLGTGCGKTHIAVLLIYEMGHLIRQPQKSACVFLAPTVALVH 109
Query: 168 QQIEACHNI----VGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQS 219
QQ + + VGI G+ + K S W+ + V +TPQ+L ++
Sbjct: 110 QQAKVIEDSTDFKVGI-------YCGKSNRLKTHSSWEKEIEQNEVLVMTPQILLYNLSH 162
Query: 220 GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQ------LRILALTATPGSKQQT 273
M + L+ DE H A + A ++M V + RI +TA+P ++
Sbjct: 163 SFIKMDLIALLIFDECHHAQVKSGHPYA--QIMKVFYKNNDGKLPRIFGMTASPVVGKEK 220
Query: 274 IQHIIDNLYI 283
+ + +L I
Sbjct: 221 YRERVTSLEI 230
>gi|169610828|ref|XP_001798832.1| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
gi|160702165|gb|EAT83689.2| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
Length = 1443
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 112/499 (22%), Positives = 195/499 (39%), Gaps = 104/499 (20%)
Query: 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIREL----MSVPVQLRI 260
V T QVL + + + L+ DEAH A N+ Y +++ + + RI
Sbjct: 102 VIVCTAQVLVDCMMHSFMSISRMNLLIFDEAHHAKSNHPYARVMKDYYAHELDTSKRPRI 161
Query: 261 LALTATP-GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEI 319
A+TA+P K Q+ +H+ E+ +++ + +H+R + + + ++
Sbjct: 162 FAMTASPVDVKGQSAEHV------------REAARELETLLHSRIATTSDSALARNSI-- 207
Query: 320 NNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAY 379
R E + YT RL R++F + P + K+G+V +
Sbjct: 208 -TRPEEEVAVYT-RL----------------------RNEF-ETPLHQKVKAKYGDVAPF 242
Query: 380 FGALITLYHIRRLLSSHGIRPAYEM---------------LEEKLKQGSFARFMSKNE-- 422
IT +L +S R A +M + E+LK R S E
Sbjct: 243 RKLFITA----KLHASELGRWASDMYWSFAFADEQSRKLQIREELKYNRSKRDWSAAELD 298
Query: 423 ----DIRKVKLLMQQ------SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFR 472
+++ +QQ ++S S K+ K+ L +++ +R I+F R
Sbjct: 299 AQMARLKEATAFVQQYEIGAPTLSEQDLSSKVMKLQYWLNLYYERT--TLARCIVFVEKR 356
Query: 473 GSVRDIMNALATIGDL-VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSI 531
+ + + IG + +G ++ + S + Q L+KFR G N + ATS+
Sbjct: 357 HTAQLLKLIFDHIGGPNLHCDVLVGINNRAGEENVSLRSQILTLQKFRRGELNCLFATSV 416
Query: 532 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVS 591
EEGLDI + +LV+ FD + + +Q GR R + + H+ + E + ++
Sbjct: 417 AEEGLDIPQCNLVVRFDLYRTMIGYVQSRGR-ARHRNSKYLHMLEAENK-------EHTE 468
Query: 592 RGKKVKDDHAITTPIFKE---------------KLTAAETDLIAKYFHPTSDS--TWRPS 634
R + D I K+ +L A E L Y S + T+R S
Sbjct: 469 RLMNARHDENIMREFCKDLTHDRQLGDVEQEKAELIALEDKLFPSYTDEKSGAKLTYRSS 528
Query: 635 LIAFPHFQA-LPSRVHKVM 652
L HF A PS H M
Sbjct: 529 LSILSHFVATYPSPDHNTM 547
>gi|317150438|ref|XP_001824024.2| dicer-like protein 1 [Aspergillus oryzae RIB40]
gi|158706453|sp|Q2U6C4.2|DCL1_ASPOR RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl1; Includes: RecName:
Full=ATP-dependent helicase dcl1
Length = 1523
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG-DLVKATEFIG 496
G SPK+ + + L+ +F+ P ++ I+F+ R + + + + +T+ ++ IG
Sbjct: 436 GELSPKVQLLRQKLIKYFE--HPTKTKCIVFTQKRYTAKMLFDLFSTLEIPYLRPGVLIG 493
Query: 497 QSSGK-ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
SG S + Q L KFR+G N + ATS+ EEGLDI + +LV+ FD + ++
Sbjct: 494 VRSGDIVGMNVSFRQQFLALVKFRSGEINCLFATSVAEEGLDIPDCNLVVRFDLYNTLIQ 553
Query: 556 MIQRMGR 562
+Q GR
Sbjct: 554 YVQSRGR 560
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 13/170 (7%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAV----VIYNFFRWFPDGK----IVFAAPS 162
R+YQ + + A NT+ L TG GKTLIA + +I N +GK F S
Sbjct: 117 REYQVELFERAKSQNTIAVLDTGSGKTLIAVLLLKHIIQNELIDRANGKPPRISFFLVDS 176
Query: 163 RPLVMQQIEACHNIV--GIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
L QQ N + + Q + T S ++ V T ++L + + +
Sbjct: 177 VTLAFQQAAVLRNNLDQNVAQFFGAMGTDLWSKQTWDHQFENNMVIVCTAEILNQCLLNS 236
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRE--LMSVPVQL-RILALTATP 267
M + L+ DEAH ++ Y IRE L + P + RI +TA+P
Sbjct: 237 YIRMDQINLLIFDEAHHTKKDHPYARIIRESYLKADPTKRPRIFGMTASP 286
>gi|332667550|ref|YP_004450338.1| DEAD/DEAH box helicase [Haliscomenobacter hydrossis DSM 1100]
gi|332336364|gb|AEE53465.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
DSM 1100]
Length = 516
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 464 RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQ-SQKVQQAVLEKFRAGG 522
RVI+F+N + +V D+ L +G S KA G +Q + AVL FR G
Sbjct: 245 RVIVFANMKKTVDDLTEGLNLLG-----------ISAKAIHGDLNQNQRNAVLTAFRGGA 293
Query: 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
NV+VAT + G+D+ VD V +D + R+GRTGR
Sbjct: 294 VNVLVATDVAARGIDVSSVDGVFNYDLPYDAEYYVHRIGRTGR 336
>gi|312084868|ref|XP_003144451.1| hypothetical protein LOAG_08872 [Loa loa]
Length = 154
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 104 YPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163
YPVN+PV YQ + +L++N L+ LP L IAAVV++NF RWFP K+V +
Sbjct: 49 YPVNMPVCRYQKRLILDSLYNNMLITLPKELDTFFIAAVVMFNFHRWFPIQKVVCICKNV 108
Query: 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQ 211
+ + I G Q I + + ++R W + + F T +
Sbjct: 109 ESSLNTAKRFAEITGYSQ--GICVYANLKKSERCQKWIQQDIIFATAE 154
>gi|238499727|ref|XP_002381098.1| Dicer-like protein [Aspergillus flavus NRRL3357]
gi|220692851|gb|EED49197.1| Dicer-like protein [Aspergillus flavus NRRL3357]
Length = 694
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG-DLVKATEFIG 496
G SPK+ + + L+ +F+ P ++ I+F+ R + + + + +T+ ++ IG
Sbjct: 424 GELSPKVQLLRQKLIKYFE--HPTETKCIVFTQKRYTAKMLFDLFSTLEIPYLRPGVLIG 481
Query: 497 QSSGK-ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
SG S + Q L KFR+G N + ATS+ EEGLDI + +LVI FD + ++
Sbjct: 482 VRSGDIVGMNVSFRQQFLALVKFRSGEINCLFATSVAEEGLDIPDCNLVIRFDLYNTLIQ 541
Query: 556 MIQRMGR 562
+Q GR
Sbjct: 542 YVQSRGR 548
Score = 45.8 bits (107), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 13/170 (7%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAV----VIYNFFRWFPDGK----IVFAAPS 162
R+YQ + + A NT+ L TG GKTLIA + +I N +GK F S
Sbjct: 105 REYQVELFERAKSQNTIAVLDTGSGKTLIAVLLLKHIIQNELIDRANGKPPRISFFLVDS 164
Query: 163 RPLVMQQIEACHNIV--GIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG 220
L QQ N + + Q + T S ++ V T ++L + + +
Sbjct: 165 VTLAFQQAAVLRNNLDQNVVQFFGAMGTDLWSKQTWDHQFENNMVIVCTAEILNQCLLNS 224
Query: 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRE--LMSVPVQL-RILALTATP 267
M + L+ DEAH ++ Y IRE L + P + RI +TA+P
Sbjct: 225 YIRMDQINLLIFDEAHHTKKDHPYARIIRESYLKADPTKRPRIFGMTASP 274
>gi|87240866|gb|ABD32724.1| Helicase, C-terminal; Argonaute and Dicer protein, PAZ;
Ribonuclease III, bacterial [Medicago truncatula]
Length = 1939
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 28/181 (15%)
Query: 108 VPV-----RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR--WFPDGKI--VF 158
VPV R YQ + + A NT+ L TG GKTLIA ++I + + K+ VF
Sbjct: 213 VPVPEEKARQYQLDVLEQAKTRNTIAFLETGAGKTLIAVLLIKSIHETLHLQNKKMLAVF 272
Query: 159 AAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW---------KTKRVFFVT 209
P PLV QQ E + +E T G FW TK V +T
Sbjct: 273 LVPKVPLVYQQAE-------VIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMT 325
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLR--ILALTAT 266
Q+L ++ M+ + L++DE H A + Y + E + P + R + +TA+
Sbjct: 326 AQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTAS 385
Query: 267 P 267
P
Sbjct: 386 P 386
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 8/139 (5%)
Query: 427 VKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG 486
V +++ +++ G +PK+ ++++L+ + T D R IIF S + A +
Sbjct: 608 VDVIIGAAVADGKVTPKVQALIKILLKYQNTDD---FRAIIFVERVVSALVLPKVFAELP 664
Query: 487 DL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
L VK IG ++ + + + KFR G ++VATS+ EEGLDI + ++V
Sbjct: 665 SLSFVKCASLIGHNNSQEMRTHQM---HDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVV 721
Query: 545 ICFDANVSPLRMIQRMGRT 563
I FD + L IQ GR
Sbjct: 722 IRFDLAKTVLAYIQSRGRA 740
>gi|288799847|ref|ZP_06405306.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
F0039]
gi|288333095|gb|EFC71574.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
F0039]
Length = 445
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 11/130 (8%)
Query: 464 RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGY 523
RVIIFS + V+DI AL L K +SG SQ + V+ KF+AG
Sbjct: 229 RVIIFSGKKDKVKDINKAL-----LSKKI-----NSGAMHSDLSQAERDEVMFKFKAGQI 278
Query: 524 NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK-HDGRIPHIFKPEVQFV 582
+V+VAT I G+DI ++ +VI +D I R+GRT R DG+ + E F
Sbjct: 279 DVLVATDIVSRGIDIDDIRMVINYDVPHDVEDYIHRIGRTARADRDGKAITLVSDEDMFY 338
Query: 583 ELSIEQYVSR 592
IEQ++ +
Sbjct: 339 FQQIEQFLEK 348
>gi|340054649|emb|CCC48949.1| putative ATP-dependent DEAD/H RNA helicase [Trypanosoma vivax Y486]
Length = 824
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 4/142 (2%)
Query: 113 YQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEA 172
YQ + + A+ + ++ LPTG GKT++AA V+ + +PD K+VF PLVMQQ +
Sbjct: 13 YQRELYEKAVNEDAIIFLPTGAGKTVLAASVMSSKLEHYPDKKVVFVVSRVPLVMQQAKT 72
Query: 173 CHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV-FFVTPQVLEKDIQSGTCLMKYLVCL- 230
+G + + S T ++F ++ V + + + +Q +K + L
Sbjct: 73 LQRAMGFGRAVATVCGAKRSLTTWSAFMESSCVGLVIIDSIFYRWMQEFPSAIKNNISLI 132
Query: 231 VIDEAHRATGNYAYCTAIRELM 252
VIDE H A G YC I E +
Sbjct: 133 VIDEVHNALG--GYCKMIVEYI 152
Score = 47.8 bits (112), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%)
Query: 511 QQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH 567
Q+A+L+ F+AG ++VATS+ EEGLD+ + VI +D+ ++ IQ GR +++
Sbjct: 463 QRAILDDFKAGATKLLVATSLLEEGLDVGRCNFVIRYDSCLTLRSFIQSRGRARKRN 519
>gi|71026577|ref|XP_762954.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
gi|68349906|gb|EAN30671.1| ATP-dependent RNA helicase, putative [Theileria parva]
Length = 707
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 21/188 (11%)
Query: 388 HIRRLLSSHGIRPAYEML--------EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGA 439
IR+++ IRP + L E K F + S + ++L +I
Sbjct: 485 QIRKIVGQ--IRPDRQTLMFSATWPSEIKRLASEFCKANSIYIQVGDLELTANPNIRQNV 542
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSS 499
+ P ++ + L D F P +V+IFS+ + + +AL + F +S
Sbjct: 543 EFPNSYEVRDKLFD-FLGSIPPEKKVLIFSDLKSFADQLTSAL-------RYRRF-KSAS 593
Query: 500 GKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQR 559
+K Q+Q+ + +L FR+G NV+VAT + GLDI ++D VI D S L I R
Sbjct: 594 LHGNKTQAQR--ERILNMFRSGDVNVLVATDVAARGLDIKDIDYVINLDVPKSLLDYIHR 651
Query: 560 MGRTGRKH 567
+GRTGR +
Sbjct: 652 IGRTGRGN 659
>gi|344313227|gb|AEN04473.1| melanoma differentiation-associated protein 5 [Carassius auratus]
Length = 984
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 444 LSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMN------ALATIGDLVKATEFIGQ 497
L+++ +++ F T++ +R IIF+ R S + +G V A+ IG
Sbjct: 653 LAQLKTIILKEFSTREV--ARGIIFTRTRLSAIALCQWIQENPKFEEVG--VSASYLIGG 708
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
K + Q+ VL++FR G N+++AT++ EEGLDI E ++VI + + + MI
Sbjct: 709 GDQSVVKPMTAAEQKDVLQRFRKGEINLLIATTVAEEGLDIAECNVVIRYCLVTNEVAMI 768
Query: 558 QRMGRTGRKHDG 569
Q GR GR DG
Sbjct: 769 QARGR-GRAEDG 779
Score = 48.9 bits (115), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 37/205 (18%)
Query: 108 VPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKIVFAAPS 162
+ +RDYQ + + AL N ++ LPTG GKT +A + + GK+V
Sbjct: 283 IVLRDYQMEVARPALEEKNIIICLPTGSGKTRVAVYITKEHLERKKQMGQPGKVVVLVNK 342
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRA--SFWKTKRVFFVTPQVLEKDI--- 217
PLV Q +A + +++++ S K + + + T Q+LE
Sbjct: 343 VPLVEQHYKAEFGRF-LKHQYSVERVSGASQLKISLPQIIEQNDIIICTAQILENSFAKA 401
Query: 218 ----QSGTCLMKYLVCLVIDEAHRA-TGNYAYCTAIRELMS--------------VPVQL 258
+ G L ++ + +VIDE H G+ IR L VP+
Sbjct: 402 KNGDEDGIKLSQFTL-MVIDECHHTKKGDVYNHIMIRYLRQKHKNQLLKKQDKSPVPIP- 459
Query: 259 RILALTATPG-----SKQQTIQHII 278
+IL LTA+PG S+Q QHI+
Sbjct: 460 QILGLTASPGVGGAMSQQMAEQHIL 484
>gi|346970337|gb|EGY13789.1| RNase3 domain-containing protein [Verticillium dahliae VdLs.17]
Length = 1563
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 460 PKHSRVIIFSNFRGSVRDIMNALAT--IGDL-VKATEFIGQSSGKASKGQSQKVQQAVLE 516
P + IIF R + + + L+ IG L +K +G S + S K Q +
Sbjct: 485 PTDHKCIIFVEKRNTAMILAHLLSLPGIGPLYLKPAALVGNPSDNSPLAMSYKEQVMTIT 544
Query: 517 KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
KFR G YN ++ATS+ EEG+DI + ++VI FD S ++ IQ GR
Sbjct: 545 KFRRGEYNCLLATSVAEEGIDIADCNIVIRFDLFNSVIQYIQSKGRA 591
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR--------WFPDGKIVFAAPS 162
R+YQ + + A N + LPTG GKTLIAA+++ + P F
Sbjct: 148 REYQIELFERAKRKNIIAVLPTGSGKTLIAALLLRHTLEQETADRRAGKPKRIAFFLVEK 207
Query: 163 RPLVMQQIEACHNIVGIPQEWTID-MTGQI--------SPTKRASFWKTKRVFFVTPQVL 213
L +QQ H ++ E+ ID + G + S KR W V T +L
Sbjct: 208 VALALQQ----HAVLECNLEFPIDRVCGDMVRSDWIKESWMKR---WDDNMVMVCTAAIL 260
Query: 214 EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRE-LMSVPVQLR---ILALTATP 267
++ + M + LV DEAH A GN+ Y I++ ++ P + R I +TA+P
Sbjct: 261 QQCLARSFIRMDQINLLVFDEAHHAKGNHPYARIIKDYYITEPDKERRPKIFGMTASP 318
>gi|378727578|gb|EHY54037.1| RNA helicase/RNAse III [Exophiala dermatitidis NIH/UT8656]
Length = 1629
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 6/128 (4%)
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQS 498
SPK++ + + L + + + ++R I+F R + + + L + DL V+ +G S
Sbjct: 421 SPKVAYLRQRLKERYSSF--PNTRAIVFVEQRLTAFALCD-LFRVLDLPNVRPGLLVGIS 477
Query: 499 SGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558
K S K Q+ LEKFR G N+I ATS+ EEG+DI + +LV+ FD +P++ +Q
Sbjct: 478 Q-KGIDSSSWKDQEVALEKFRVGTINLIFATSVAEEGIDIPQCNLVVRFDLYKTPIQYMQ 536
Query: 559 RMGRTGRK 566
GR K
Sbjct: 537 SRGRARMK 544
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 20/205 (9%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF--------RWFPDGKIVFAAPS 162
R+YQ + + A N + L TG GKTLIAA++I +F + P I F S
Sbjct: 95 REYQEELFERAKDENVIAVLDTGSGKTLIAALLIRHFLQQELIDRSQGKPPKTIFFLVNS 154
Query: 163 RPLVMQQIEACHNIVGIPQEWTIDMTG--QISPTKRASFWKT---KRVFFVTPQVLEKDI 217
PL QQ + +PQ+ I + G ++ +RA + + V T VL++ +
Sbjct: 155 VPLANQQARFLN--ANLPQK-VIALYGDSKVDLWRRAEWNRICAENNVVVCTAPVLDQCL 211
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRE--LMSVPVQLRILALTATP-GSKQQTI 274
G M + +V DEAH N+ Y IR+ L + RI +TA+P ++ I
Sbjct: 212 MHGYLNMGQISLIVFDEAHHCKKNHPYSRIIRDYYLKWQDNRPRIFGMTASPVDESRKDI 271
Query: 275 QHIIDNLYISTLEYRNESDQDVSSY 299
+ ++ +L S L+ + + D+S +
Sbjct: 272 KQVVADLE-SMLQSKIITTNDLSVF 295
>gi|403417815|emb|CCM04515.1| predicted protein [Fibroporia radiculosa]
Length = 1463
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 27/137 (19%)
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV----RDIMNALAT-------IGDLV 489
SPK+ +++++L H+ S F+G V R + LAT + L+
Sbjct: 360 SPKVRELIDILFGHYT------------STFQGIVFVEQRHVAACLATMLSRVPQLSHLI 407
Query: 490 KATEFIGQSSGKASK----GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545
K+ + IG + +K G + K QQ +++ FR N+++ATS+ EEGLD DLVI
Sbjct: 408 KSEQLIGHGASTLAKSQMKGMALKTQQDIVKMFRERKINLLIATSVAEEGLDFPACDLVI 467
Query: 546 CFDANVSPLRMIQRMGR 562
FD + +Q GR
Sbjct: 468 RFDPLQHMVGYLQSRGR 484
Score = 43.9 bits (102), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 28/174 (16%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKI------VFAAPSRP 164
R YQ I A N + AL TG GKT I+ ++I +W I VF P
Sbjct: 15 RRYQEEIFARAQRGNVIAALDTGSGKTYISTLLI----KWISARHIGLRKIIVFLVPKVA 70
Query: 165 LVMQQIEACHN-----IVGIPQEWTIDMTGQISPTKRASFWKTKR----VFFVTPQVLEK 215
LV QQ + ++ +D++ + WK + V +T Q+
Sbjct: 71 LVDQQGDFIAKQTPLRVIKCCGATAVDLSDR-------QGWKKELDRADVLVMTAQIFLN 123
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR--ILALTATP 267
+ + + +V DE H N+AY +RE P Q R I +TA+P
Sbjct: 124 LLTHSHWSLDKVSLMVFDECHHTRKNHAYNGIMREYFQCPTQDRPKIFGMTASP 177
>gi|374259480|gb|AEZ02176.1| Dicer [Arabidopsis thaliana]
Length = 1033
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 84/198 (42%), Gaps = 23/198 (11%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKI--VFAAPSRPLV 166
R YQ + + A NT+ L TG GKTLIA ++I + + + K+ VF P PLV
Sbjct: 250 RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLV 309
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR---------VFFVTPQVLEKDI 217
QQ E N T G FW ++R V +T Q+L +
Sbjct: 310 YQQAEVIRN-------QTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNIL 362
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLR--ILALTATPGSKQQTI 274
+ M+ + L++DE H A + Y + E + P R I +TA+P + +
Sbjct: 363 RHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVS 422
Query: 275 QHIIDNLYISTLEYRNES 292
+ + I LE + +S
Sbjct: 423 SQVDCAIKIRNLETKLDS 440
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 430 LMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL- 488
++ +++ G +PK+ ++++L+ + T D R I+F + + A + L
Sbjct: 635 VIGAAVADGKVTPKVQSLIKLLLKYQHTAD---FRAIVFVERVVAALVLPKVFAELPSLS 691
Query: 489 -VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
++ IG ++ + K Q + KFR G ++VATS+ EEGLDI + ++V+ F
Sbjct: 692 FIRCASMIGHNNSQEMKSSQM---QDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRF 748
Query: 548 DANVSPLRMIQRMGRT 563
D + L IQ GR
Sbjct: 749 DLAKTVLAYIQSRGRA 764
>gi|302502160|ref|XP_003013071.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371]
gi|291176633|gb|EFE32431.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371]
Length = 1490
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 107/456 (23%), Positives = 185/456 (40%), Gaps = 64/456 (14%)
Query: 145 YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRAS------ 198
Y R D + F AP PL QQ A +P T +TG + + ++
Sbjct: 143 YELERCSNDKLVWFLAPRVPLAEQQYRAISE--QLPAYQTKILTGADNLERWSTQQIWDA 200
Query: 199 FWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL 258
F R+ TPQ+L + +G ++ + LV DE + N +P
Sbjct: 201 FLLNTRIVVSTPQILLDVLSNGFITLRRIALLVFDEDQLSETN-----------DLP--- 246
Query: 259 RILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVE 318
IL LTA+P SK I D+L S L + +Q++ ++ I E+ E
Sbjct: 247 SILGLTASPTSKL-----IEDSL--SLLMESRQLEQNLDAFCKTPAIHREEMMQYVHIPE 299
Query: 319 INNRIWE--VIRPYTSRLSAIGLLQNRD------YQTLSPVDLLNSRDKFRQA---PPPN 367
+ ++ I P+ + + +L + D +Q S +K +A P
Sbjct: 300 LRRISYQKDSIIPHNMEMKFLHMLDDIDIESDPFFQRHKGKTDSKSTEKCLRALARKTPC 359
Query: 368 LPQIK--FGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEK---LKQGSFARFMSKNE 422
L Q+K F ++ +G L SS I Y EK L S++ + +
Sbjct: 360 LDQLKRCFTKISHMYGEL------GHWASSAFISEIYRRTREKRAKLVDHSWSEWDRDDS 413
Query: 423 D-----IRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRD 477
+ V +M + + +S+ +E L+D ++ SR IIF R +
Sbjct: 414 SFMCNALEPVVAIMGER-CWNSTPDAVSQKVEHLIDLLSSELTGSSRGIIFVEQRATAVM 472
Query: 478 IMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQA-----VLEKFRAGGYNVIVATS 530
+ + ++ +L +K+ F+G S+ K ++ + + ++G N++VATS
Sbjct: 473 LSHLISHYPELTHIKSDYFLGNSAFSDRKADLTELSKPGDMKNSIADLKSGKKNLLVATS 532
Query: 531 IGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566
+ EEG+D+ DLV+CFD +QR GR +K
Sbjct: 533 VLEEGIDVSACDLVVCFDPPKQLRSFVQRRGRARKK 568
>gi|26340014|dbj|BAC33670.1| unnamed protein product [Mus musculus]
Length = 472
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFI---- 495
++PKL + VL + + K ++ I+F R +++AL + A F+
Sbjct: 154 ENPKLRDLYLVLQEEYHLKP--ETKTILFVKTRA----LVDALKKWIEENPALSFLKPGI 207
Query: 496 --GQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIVATSIGEEGLDIMEVDLVICFDANVS 552
G+ + G + Q+ VLE FRA G N+++ATS+ +EG+DI E +LVI ++ +
Sbjct: 208 LTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGN 267
Query: 553 PLRMIQRMGRTGRKHDGR 570
++MIQ GR GR D +
Sbjct: 268 VIKMIQTRGR-GRARDSK 284
>gi|357512663|ref|XP_003626620.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
gi|355501635|gb|AES82838.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
Length = 1965
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 28/181 (15%)
Query: 108 VPV-----RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR--WFPDGKI--VF 158
VPV R YQ + + A NT+ L TG GKTLIA ++I + + K+ VF
Sbjct: 213 VPVPEEKARQYQLDVLEQAKTRNTIAFLETGAGKTLIAVLLIKSIHETLHLQNKKMLAVF 272
Query: 159 AAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW---------KTKRVFFVT 209
P PLV QQ E + +E T G FW TK V +T
Sbjct: 273 LVPKVPLVYQQAE-------VIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMT 325
Query: 210 PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLR--ILALTAT 266
Q+L ++ M+ + L++DE H A + Y + E + P + R + +TA+
Sbjct: 326 AQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTAS 385
Query: 267 P 267
P
Sbjct: 386 P 386
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 8/139 (5%)
Query: 427 VKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG 486
V +++ +++ G +PK+ ++++L+ + T D R IIF S + A +
Sbjct: 608 VDVIIGAAVADGKVTPKVQALIKILLKYQNTDD---FRAIIFVERVVSALVLPKVFAELP 664
Query: 487 DL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
L VK IG ++ + + + KFR G ++VATS+ EEGLDI + ++V
Sbjct: 665 SLSFVKCASLIGHNNSQEMRTHQM---HDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVV 721
Query: 545 ICFDANVSPLRMIQRMGRT 563
I FD + L IQ GR
Sbjct: 722 IRFDLAKTVLAYIQSRGRA 740
>gi|258565145|ref|XP_002583317.1| predicted protein [Uncinocarpus reesii 1704]
gi|237907018|gb|EEP81419.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1194
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 451 LVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT------IGDLVKATEFIGQSSGKASK 504
L+D + + S IIF+ R +V + + L+ IG + F+G SS + K
Sbjct: 162 LIDFLENEHVNGSIGIIFARERSTVVMLTHLLSLHPRTKHIGTIA----FLGSSSFASRK 217
Query: 505 G-----QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQR 559
+ K Q L+ R G N+I+ATS+ EEG+D+ DLVICFD + IQR
Sbjct: 218 SDITELHNTKAQMTALDDLRNGKKNLIIATSVLEEGIDVPACDLVICFDFPQNLRSFIQR 277
Query: 560 MGRTGRK 566
GR +K
Sbjct: 278 RGRARKK 284
>gi|443925066|gb|ELU43989.1| type III restriction enzyme [Rhizoctonia solani AG-1 IA]
Length = 1442
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 444 LSKMLEVLVDHFKTKDPKHSRVIIFSNFR---GSVRDIMNALATIGDLVKATEFIGQSSG 500
L+ L++L+ + +IF R ++ ++ + + D VKA +G G
Sbjct: 371 LTPKLKILISILEANRADDFSALIFVEQRQVASALAWLLPLVPELRDWVKAAALVGHGDG 430
Query: 501 KAS----KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
+ G + Q++ + FR+G N+++ATS+ EEGLD LV+ DA + +
Sbjct: 431 SRAGFEGSGMAHAAQRSTVRNFRSGSINLVIATSVAEEGLDFQACKLVVRLDAPQTMVGY 490
Query: 557 IQRMGRTGRKHDGRIPHIFKPE 578
+Q GR RKHD + PE
Sbjct: 491 LQSRGR-ARKHDSAYVVLTDPE 511
>gi|334343993|ref|YP_004552545.1| DEAD/DEAH box helicase [Sphingobium chlorophenolicum L-1]
gi|334100615|gb|AEG48039.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
L-1]
Length = 454
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 466 IIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNV 525
+IF N + +VRD L K+ + G SG+ Q + A LE+FRAG N+
Sbjct: 246 VIFCNRKTTVRD----------LNKSLQRHGFKSGEIHGDIDQSARIAELERFRAGSVNI 295
Query: 526 IVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
+VA+ + GLDI V V FDA P + R+GRTGR + + F
Sbjct: 296 LVASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTF 345
>gi|444705708|gb|ELW47101.1| Interferon-induced helicase C domain-containing protein 1 [Tupaia
chinensis]
Length = 879
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 473 GSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIG 532
G+ R +++ +G VKA IG K +Q Q+ V+ KFR G N+++AT++
Sbjct: 590 GTDRFLIDLFFEVG--VKAHHLIGAGHSSEFKPMTQNEQREVISKFRTGKINLLIATTVA 647
Query: 533 EEGLDIMEVDLVICFDANVSPLRMIQRMGR 562
EEGLDI E ++VI + + + M+Q GR
Sbjct: 648 EEGLDIKECNIVIRYGLVTNEIAMVQARGR 677
>gi|110520367|gb|ABG74922.1| Dicer-like 1b protein [Physcomitrella patens]
Length = 1695
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 409 LKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIF 468
+++GSF +S E + ++ + +++ G +PK+ +++VL+ + T D R IIF
Sbjct: 391 VEEGSFLTLVSVGEHLDEI---LGAAVADGKVTPKVQSLIKVLIGYQHTDD---FRAIIF 444
Query: 469 SNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVI 526
+ +L + L VK IG ++ ++ + Q + KFR G ++
Sbjct: 445 VERVWVGVTLCRSLQSCPSLKFVKCASLIGHNN---NQDMPTRQMQETISKFRDGRVTLL 501
Query: 527 VATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
VATS+ EGLDI + ++VI FD + L IQ GR
Sbjct: 502 VATSVAAEGLDIRQCNVVIRFDLAKTVLAYIQSRGRA 538
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 23/173 (13%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVI---YNFFRWFPDGKI-VFAAPSRPLV 166
R YQ + A T+ L TG GKTLIA +++ + R + + +F P PLV
Sbjct: 24 RTYQLEVLAQAKVKITVAFLDTGAGKTLIAILLMKHKHQVLREYDKRMLALFLVPKVPLV 83
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK---------TKRVFFVTPQVLEKDI 217
QQ + N T G + FW TK VF +T Q+L +
Sbjct: 84 YQQADVIRN-------GTKFSVGHYCGEMGSRFWDARGWQREFDTKDVFVMTAQILLNIL 136
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIREL-MSVPVQLR--ILALTATP 267
+ M+ + L++DE H A + Y + E + P R + + A+P
Sbjct: 137 RHSIVKMEAIHLLILDECHHAVKKHPYSLVMSEFYLMTPKDKRPCVFGMIASP 189
>gi|256829787|ref|YP_003158515.1| DEAD/DEAH box helicase [Desulfomicrobium baculatum DSM 4028]
gi|256578963|gb|ACU90099.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
DSM 4028]
Length = 545
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 17/161 (10%)
Query: 431 MQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK 490
+QQ + H + KL +L ++ K R+++F+ R + + LA G V
Sbjct: 217 VQQKVHHVNKDNKLPLLLHLIEKQ------KQDRILVFARTRTWANRLTDKLAAHGISVA 270
Query: 491 ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550
A +SQ +++ LE+F+ G +++VAT + GLDI + LV+ +D
Sbjct: 271 ALH----------GSKSQSLRKRTLEEFKDGKIHILVATDVAARGLDISNLPLVVNYDIP 320
Query: 551 VSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVELSIEQYV 590
SP + R+GRTGR G + PE + + L+IE +
Sbjct: 321 NSPEDYVHRIGRTGRAGVSGIAVSLVSPEERNLLLAIEDLL 361
>gi|405966016|gb|EKC31344.1| Putative ATP-dependent RNA helicase DDX58 [Crassostrea gigas]
Length = 1018
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQ 497
++P L K+ E++++ + + + R I+F R I + + +L +KA ++ G
Sbjct: 684 ENPLLMKLKEIILETHR--EESNMRGIVFVRTRVVADIIASWMKETDELKQIKARKYTGA 741
Query: 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557
+ G ++ Q+ +E F G + VIVAT+I EEGLDI E +LV+ +D + + I
Sbjct: 742 QARGTDGGSTKSKQRETIELFTKGDFKVIVATTIAEEGLDIEECNLVVKYDYAGNLISQI 801
Query: 558 QRMGRTGRKHDGR 570
Q GR GR + R
Sbjct: 802 QAKGR-GRAVNSR 813
>gi|242050992|ref|XP_002463240.1| hypothetical protein SORBIDRAFT_02g040380 [Sorghum bicolor]
gi|241926617|gb|EER99761.1| hypothetical protein SORBIDRAFT_02g040380 [Sorghum bicolor]
Length = 502
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 23/211 (10%)
Query: 412 GSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNF 471
G+ + F E + V+ L QQ I Q +L + + K +DP S ++ S
Sbjct: 274 GNKSYFFEAYEGFKTVETLKQQYIHVPPQGKELHLWYLLSIMKEKKEDPIRSAIVFVS-- 331
Query: 472 RGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSI 531
+ +V ++ L E +G + + +SQ + L +F++G ++++T +
Sbjct: 332 KCNVCQYLDLL---------LEELGYPAVALNSHKSQAQRLLALNRFKSGQVPILISTDV 382
Query: 532 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVEL------- 584
G GLDI VDLVI +D +SP I R+GRT R G + F + L
Sbjct: 383 GSRGLDIQTVDLVINYDMPMSPRDYIHRVGRTARASRGGLAISFVTQKDICLLHEIEDVV 442
Query: 585 --SIEQYVSRGKKVKDDHAITTPIFKEKLTA 613
+E Y K+V D T +FK + A
Sbjct: 443 GKQLEAYECNDKEVTKD---ITKVFKARRLA 470
>gi|391348710|ref|XP_003748587.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
Length = 1732
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 86/196 (43%), Gaps = 25/196 (12%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR-----WF------PDGK-IVF 158
R YQ + + A NT+V L TG GKT I+ ++I W P GK +F
Sbjct: 116 RSYQVELFEYAKKHNTIVCLGTGTGKTFISVLLIKYLEHQVTGPWLDESGRTPVGKRTIF 175
Query: 159 AAPSRPLVMQQ--IEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKD 216
AP+ PLV QQ + ACH V + T + + + V +TP+V
Sbjct: 176 LAPNVPLVEQQSAVLACHMTVKVGTYVGSMNTDRWTSEHWNKELQEHGVLVMTPEVCRIA 235
Query: 217 IQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV--QLRILALTATPGSKQQTI 274
+ G ++ + LV+DE HRATG Y + ++ + RIL LTA+ + Q I
Sbjct: 236 VDHGFIPLENINLLVLDECHRATGVDPYVKIMENYKNLNANDRPRILGLTASVVNAQVPI 295
Query: 275 Q---------HIIDNL 281
H+ID L
Sbjct: 296 SIRSCDATSAHLIDIL 311
Score = 49.3 bits (116), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 488 LVKATEFIGQSSGKASKGQSQ-------KVQQAVLEKFRAGGYNVIVATSIGEEGLDIME 540
V + +GQ+ G + Q K Q+ V+ FR G YN++ ATS+ EEG+D+
Sbjct: 500 FVNCSFIVGQNQGAYGRDVDQESMKMNAKAQKKVMRDFRGGIYNLMFATSVIEEGMDVPA 559
Query: 541 VDLVICFDANVSPLRMIQRMGRTGRK 566
+L++ FD + Q GR K
Sbjct: 560 CNLIVRFDPPMDVRSYTQSKGRARAK 585
>gi|371486408|gb|AEX31249.1| Dicer 2 [Aedes albopictus]
Length = 1625
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 125/563 (22%), Positives = 229/563 (40%), Gaps = 95/563 (16%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR----WFPDG--KIVFAAPSRP 164
RDYQ ++ + NT++ LPTG GKT IA + I R +G + F +
Sbjct: 14 RDYQRSMKLICMQKNTIIYLPTGAGKTHIALMAIKEMGRDLDKPLTEGGKRTFFVVNTVA 73
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR---------VFFVTPQVLEK 215
L QQ E + + T D T + + WK + V T Q+L
Sbjct: 74 LAKQQAEF------LSRNLTYD-TSIYTSDRNVDTWKQDKWLDEFAKFQVVVCTCQILLD 126
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV--QLRILALTATPGSKQ-Q 272
++ G +K++ L+ DE H G + + + + VP R++ L+ KQ +
Sbjct: 127 VLKHGYLSIKHINLLIFDECHHGVGEHPMHGIMEQFLRVPKSDHPRVIGLSGMLLYKQIK 186
Query: 273 TIQHI------IDNLYISTLEYRNESD--QDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
T+ + ++N + ST+ D +V + N K E+ + +++ ++ +
Sbjct: 187 TVDQVSPELERLENTFNSTIATVGSYDAFTEVCRFSTNPK----ELLVSYDSLRLSPVMV 242
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK--FGEV------ 376
+++R + I Y LN + P L +IK F E+
Sbjct: 243 DIVRSIEAFSQTINDFHLPKY--------LNQNKALMKDRPKPLKEIKKLFTELVYQLGD 294
Query: 377 EAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKN-----EDIR-KVKLL 430
FG I L G+ +E L+++ S R ++ E +R +++ L
Sbjct: 295 TGLFGCSIALL---------GLIVQFE-LDKRQSDSSMLRLALRSCITFCESLRHQIEKL 344
Query: 431 M-----QQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI 485
M ++ ++ + S K+ +++ L ++ K ++ ++F R S + + + L
Sbjct: 345 MSGLDIKEKLTRFS-SLKIRQLINELEKMYERNRDKKAKTLVFVQRRFSAKVLYHVLKIY 403
Query: 486 ------GDLVKATEFIGQSSGKASKGQSQ----KVQQAVLEKFRAGGYNVIVATSIGEEG 535
DL+ +F+ S+G + Q K + V+E+F+ NVIV T++ EEG
Sbjct: 404 FSQTEDADLI-LPDFMVGSNGSMPESIEQILSAKKDRRVIERFKRNETNVIVTTNVLEEG 462
Query: 536 LDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQ-FVE-----LSIEQY 589
+D+ + VI +D + Q GR K + + E Q F+E SIEQ
Sbjct: 463 IDLQMCNTVIKYDHPQTFASYQQSKGRARMKDSQYMVMLNNEERQKFLEKYRLYKSIEQE 522
Query: 590 VSR---GKKVKDDHAITTPIFKE 609
+ R GK + + + KE
Sbjct: 523 LQRCLIGKTINRPDPLDADVHKE 545
>gi|302896162|ref|XP_003046961.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI
77-13-4]
gi|256727889|gb|EEU41248.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI
77-13-4]
Length = 1452
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 7/134 (5%)
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK---ATEFIG- 496
SPK+ K+ E+L+ F K R I+F R + + + G + A IG
Sbjct: 363 SPKMKKLHEILLHAFTRDSTK--RCIVFVEKRHTAWLLSDLYQQQGMRIPGMVAYYMIGS 420
Query: 497 QSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556
QS+ S + Q L+KF+ G N + AT++ EEG+D+ + DLVI FD S ++
Sbjct: 421 QSASSTHSNMSHRDQVVTLQKFKRGSINCLFATTVAEEGIDVPDCDLVIRFDLYNSVIQY 480
Query: 557 IQRMGRTGRKHDGR 570
+Q GR R+ + R
Sbjct: 481 LQSKGR-ARQSNSR 493
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 26/202 (12%)
Query: 87 ESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYN 146
+S+ H+ +E+ K P R+YQ + + A NT+V LPTG GKTLIAA+++ +
Sbjct: 41 QSVAHLIKTSESRKIIATP-----REYQIELFERAKQKNTIVVLPTGTGKTLIAALLLRH 95
Query: 147 FFRWFPDGKIV--------FAAPSRPLVMQQIEACHNIVG---IPQEWTIDMTGQISPTK 195
+ + + + F L QQ + +G I + W +M G + +
Sbjct: 96 YLEQEMEDRAIGKPKKVAFFLVEKVALCYQQYAVLNCNLGEHPITKFWG-NMKGMV---R 151
Query: 196 RASFWKTK----RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRE- 250
+ +W + V T Q+L + G M + L+ DEAH A ++ Y +R
Sbjct: 152 KKQYWDQQFSENMVVVCTAQILVDCLNDGFIKMSQINLLIFDEAHHAKKDHPYARIMRNH 211
Query: 251 -LMSVPVQLRILALTATPGSKQ 271
+ + RIL +TA+P Q
Sbjct: 212 YIRYQGERPRILGMTASPVDSQ 233
>gi|14475571|emb|CAC41975.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
Length = 1964
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 461 KHSRVIIFSNFRGSVRDIMNALAT--IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518
K R+++F R ++ + L + + +G + G + QQ+++ KF
Sbjct: 198 KDLRILVFVETRSGASNLTSMLKKEPFQEYLHTKRLVGHN---GDDGMDSEKQQSIIRKF 254
Query: 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575
R G +IV T++ EEG+D+ + ++VIC+D +S +IQR GR K++ + I+
Sbjct: 255 RDGKCRLIVTTNVLEEGIDVQDCNIVICYDGILSLKSLIQRRGRARSKNESKFIIIY 311
>gi|328872313|gb|EGG20680.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
Length = 2876
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 451 LVDHFKTKDPKHS-----RVIIFSNFRGSVRDIMNALA--TIGDLVKATEFIGQSSGKAS 503
LVD K K HS R IIF R + + L + IG ++G
Sbjct: 729 LVDLLKKK---HSSDIEFRGIIFVQMRSTAMQLTKMLQKESFHKDYNINFLIGHNAGV-- 783
Query: 504 KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563
G Q ++E+F+ G ++VAT++ EEGLD+ E +LVICF+++ S MIQR GR
Sbjct: 784 -GMDTIDQHRIIEQFKLGHCKLLVATNVLEEGLDVSECNLVICFESDFSMRSMIQRRGR- 841
Query: 564 GRKHDGRIPHI 574
R +G ++
Sbjct: 842 ARSENGNFMYL 852
Score = 46.6 bits (109), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 40/172 (23%)
Query: 125 NTLVALPTGLGKTLIAAVVIYNFF----RWFPDGKI-----VFAAPSRPLVMQQIEACH- 174
N+++ +PTG GKTLI+ ++I + D K+ +F PLV QQ +A
Sbjct: 358 NSIIVIPTGYGKTLISIMLINAMHELNGKKSADPKVAKRMSLFLVTKIPLVAQQAKAIEF 417
Query: 175 -----NIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT--CLMKYL 227
N+ G + +F +L D+ T C + +L
Sbjct: 418 YSPHLNLAVASGGGGGGGVGSNGNSTSLNF-----------DMLRPDVVVCTVDCAVNWL 466
Query: 228 V----------CLVIDEAHRATGNYAYCTAIR--ELMSVPVQLRILALTATP 267
++ DEAH ATG+++YCT +R +L Q RIL LTA+P
Sbjct: 467 GNMKIAVEDFHTIIFDEAHHATGDHSYCTMVRRVQLADRANQPRILGLTASP 518
>gi|371486404|gb|AEX31247.1| Dicer 2 isoform A [Aedes albopictus]
gi|371486406|gb|AEX31248.1| Dicer 2 isoform B [Aedes albopictus]
Length = 1659
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 125/563 (22%), Positives = 229/563 (40%), Gaps = 95/563 (16%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR----WFPDG--KIVFAAPSRP 164
RDYQ ++ + NT++ LPTG GKT IA + I R +G + F +
Sbjct: 14 RDYQRSMKLICMQKNTIIYLPTGAGKTHIALMAIKEMGRDLDKPLTEGGKRTFFVVNTVA 73
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR---------VFFVTPQVLEK 215
L QQ E + + T D T + + WK + V T Q+L
Sbjct: 74 LAKQQAEF------LSRNLTYD-TSIYTSDRNVDTWKQDKWLDEFAKFQVVVCTCQILLD 126
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV--QLRILALTATPGSKQ-Q 272
++ G +K++ L+ DE H G + + + + VP R++ L+ KQ +
Sbjct: 127 VLKHGYLSIKHINLLIFDECHHGVGEHPMHGIMEQFLRVPKSDHPRVIGLSGMLLYKQIK 186
Query: 273 TIQHI------IDNLYISTLEYRNESD--QDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
T+ + ++N + ST+ D +V + N K E+ + +++ ++ +
Sbjct: 187 TVDQVSPELERLENTFNSTIATVGSYDAFTEVCRFSTNPK----ELLVSYDSLRLSPVMV 242
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK--FGEV------ 376
+++R + I Y LN + P L +IK F E+
Sbjct: 243 DIVRSIEAFSQTINDFHLPKY--------LNQNKALMKDRPKPLKEIKKLFTELVYQLGD 294
Query: 377 EAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKN-----EDIR-KVKLL 430
FG I L G+ +E L+++ S R ++ E +R +++ L
Sbjct: 295 TGLFGCSIALL---------GLIVQFE-LDKRQSDSSMLRLALRSCITFCESLRHQIEKL 344
Query: 431 M-----QQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI 485
M ++ ++ + S K+ +++ L ++ K ++ ++F R S + + + L
Sbjct: 345 MSGLDIKEKLTRFS-SLKIRQLINELEKMYERNRDKKAKTLVFVQRRFSAKVLYHVLKIY 403
Query: 486 ------GDLVKATEFIGQSSGKASKGQSQ----KVQQAVLEKFRAGGYNVIVATSIGEEG 535
DL+ +F+ S+G + Q K + V+E+F+ NVIV T++ EEG
Sbjct: 404 FSQTEDADLI-LPDFMVGSNGSMPESIEQILSAKKDRRVIERFKKNETNVIVTTNVLEEG 462
Query: 536 LDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQ-FVE-----LSIEQY 589
+D+ + VI +D + Q GR K + + E Q F+E SIEQ
Sbjct: 463 IDLQMCNTVIKYDHPQTFASYQQSKGRARMKDSQYMVMLNNEERQKFLEKYRLYKSIEQE 522
Query: 590 VSR---GKKVKDDHAITTPIFKE 609
+ R GK + + + KE
Sbjct: 523 LQRCLIGKTINRPDPLDADVHKE 545
>gi|371486410|gb|AEX31250.1| Dicer 2 [Aedes albopictus]
Length = 1659
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 125/563 (22%), Positives = 229/563 (40%), Gaps = 95/563 (16%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR----WFPDG--KIVFAAPSRP 164
RDYQ ++ + NT++ LPTG GKT IA + I R +G + F +
Sbjct: 14 RDYQRSMKLICMQKNTIIYLPTGAGKTHIALMAIKEMGRDLDKPLTEGGKRTFFVVNTVA 73
Query: 165 LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR---------VFFVTPQVLEK 215
L QQ E + + T D T + + WK + V T Q+L
Sbjct: 74 LAKQQAEF------LSRNLTYD-TSIYTSDRNVDTWKQDKWLDEFAKFQVVVCTCQILLD 126
Query: 216 DIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV--QLRILALTATPGSKQ-Q 272
++ G +K++ L+ DE H G + + + + VP R++ L+ KQ +
Sbjct: 127 VLKHGYLSIKHINLLIFDECHHGVGEHPMHGIMEQFLRVPKSDHPRVIGLSGMLLYKQIK 186
Query: 273 TIQHI------IDNLYISTLEYRNESD--QDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324
T+ + ++N + ST+ D +V + N K E+ + +++ ++ +
Sbjct: 187 TVDQVSPELERLENTFNSTIATVGSYDAFTEVCRFSTNPK----ELLVSYDSLRLSPVMV 242
Query: 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK--FGEV------ 376
+++R + I Y LN + P L +IK F E+
Sbjct: 243 DIVRSIEAFSQTINDFHLPKY--------LNQNKALMKDRPKPLKEIKKLFTELVYQLGD 294
Query: 377 EAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKN-----EDIR-KVKLL 430
FG I L G+ +E L+++ S R ++ E +R +++ L
Sbjct: 295 TGLFGCSIALL---------GLIVQFE-LDKRQSDSSMLRLALRSCITFCESLRHQIEKL 344
Query: 431 M-----QQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI 485
M ++ ++ + S K+ +++ L ++ K ++ ++F R S + + + L
Sbjct: 345 MSGLDIKEKLTRFS-SLKIRQLINELEKMYERNRDKKAKTLVFVQRRFSAKVLYHVLKIY 403
Query: 486 ------GDLVKATEFIGQSSGKASKGQSQ----KVQQAVLEKFRAGGYNVIVATSIGEEG 535
DL+ +F+ S+G + Q K + V+E+F+ NVIV T++ EEG
Sbjct: 404 FSQTEDADLI-LPDFMVGSNGSMPESIEQILSAKKDRRVIERFKKNETNVIVTTNVLEEG 462
Query: 536 LDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQ-FVE-----LSIEQY 589
+D+ + VI +D + Q GR K + + E Q F+E SIEQ
Sbjct: 463 IDLQMCNTVIKYDHPQTFASYQQSKGRARMKDSQYMVMLNNEERQKFLEKYRLYKSIEQE 522
Query: 590 VSR---GKKVKDDHAITTPIFKE 609
+ R GK + + + KE
Sbjct: 523 LQRCLIGKTINRPDPLDADVHKE 545
>gi|334182203|ref|NP_001184881.1| endoribonuclease Dicer [Arabidopsis thaliana]
gi|332189100|gb|AEE27221.1| endoribonuclease Dicer [Arabidopsis thaliana]
Length = 1910
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 84/198 (42%), Gaps = 23/198 (11%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKI--VFAAPSRPLV 166
R YQ + + A NT+ L TG GKTLIA ++I + + + K+ VF P PLV
Sbjct: 250 RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLV 309
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR---------VFFVTPQVLEKDI 217
QQ E N T G FW ++R V +T Q+L +
Sbjct: 310 YQQAEVIRN-------QTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNIL 362
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLR--ILALTATPGSKQQTI 274
+ M+ + L++DE H A + Y + E + P R I +TA+P + +
Sbjct: 363 RHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVS 422
Query: 275 QHIIDNLYISTLEYRNES 292
+ + I LE + +S
Sbjct: 423 SQVDCAIKIRNLETKLDS 440
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 430 LMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL- 488
++ +++ G +PK+ ++++L+ + T D R I+F + + A + L
Sbjct: 635 VIGAAVADGKVTPKVQSLIKLLLKYQHTAD---FRAIVFVERVVAALVLPKVFAELPSLS 691
Query: 489 -VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
++ IG ++ + K Q + KFR G ++VATS+ EEGLDI + ++V+ F
Sbjct: 692 FIRCASMIGHNNSQEMKSSQM---QDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRF 748
Query: 548 DANVSPLRMIQRMGRT 563
D + L IQ GR
Sbjct: 749 DLAKTVLAYIQSRGRA 764
>gi|15223286|ref|NP_171612.1| endoribonuclease Dicer [Arabidopsis thaliana]
gi|34922211|sp|Q9SP32.2|DCL1_ARATH RecName: Full=Endoribonuclease Dicer homolog 1; AltName:
Full=Dicer-like protein 1; Short=AtDCL1; AltName:
Full=Protein ABNORMAL SUSPENSOR 1; AltName: Full=Protein
CARPEL FACTORY; AltName: Full=Protein SHORT INTEGUMENTS
1; AltName: Full=Protein SUSPENSOR 1
gi|11559645|gb|AAG38019.1|AF292940_1 short integuments 1 [Arabidopsis thaliana]
gi|11559647|gb|AAG38020.1|AF292941_1 short integuments 1 [Arabidopsis thaliana]
gi|332189099|gb|AEE27220.1| endoribonuclease Dicer [Arabidopsis thaliana]
Length = 1909
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 84/198 (42%), Gaps = 23/198 (11%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKI--VFAAPSRPLV 166
R YQ + + A NT+ L TG GKTLIA ++I + + + K+ VF P PLV
Sbjct: 250 RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLV 309
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR---------VFFVTPQVLEKDI 217
QQ E N T G FW ++R V +T Q+L +
Sbjct: 310 YQQAEVIRN-------QTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNIL 362
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLR--ILALTATPGSKQQTI 274
+ M+ + L++DE H A + Y + E + P R I +TA+P + +
Sbjct: 363 RHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVS 422
Query: 275 QHIIDNLYISTLEYRNES 292
+ + I LE + +S
Sbjct: 423 SQVDCAIKIRNLETKLDS 440
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 430 LMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL- 488
++ +++ G +PK+ ++++L+ + T D R I+F + + A + L
Sbjct: 635 VIGAAVADGKVTPKVQSLIKLLLKYQHTAD---FRAIVFVERVVAALVLPKVFAELPSLS 691
Query: 489 -VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
++ IG ++ + K Q + KFR G ++VATS+ EEGLDI + ++V+ F
Sbjct: 692 FIRCASMIGHNNSQEMKSSQM---QDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRF 748
Query: 548 DANVSPLRMIQRMGRT 563
D + L IQ GR
Sbjct: 749 DLAKTVLAYIQSRGRA 764
>gi|6102610|gb|AAF03534.1|AF187317_1 CAF protein [Arabidopsis thaliana]
Length = 1909
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 84/198 (42%), Gaps = 23/198 (11%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKI--VFAAPSRPLV 166
R YQ + + A NT+ L TG GKTLIA ++I + + + K+ VF P PLV
Sbjct: 250 RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLV 309
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR---------VFFVTPQVLEKDI 217
QQ E N T G FW ++R V +T Q+L +
Sbjct: 310 YQQAEVIRN-------QTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNIL 362
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLR--ILALTATPGSKQQTI 274
+ M+ + L++DE H A + Y + E + P R I +TA+P + +
Sbjct: 363 RHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVS 422
Query: 275 QHIIDNLYISTLEYRNES 292
+ + I LE + +S
Sbjct: 423 SQVDCAIKIRNLETKLDS 440
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 430 LMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL- 488
++ +++ G +PK+ ++++L+ + T D R I+F + + A + L
Sbjct: 635 VIGAAVADGKVTPKVQSLIKLLLKYQHTAD---FRAIVFVERVVAALVLPKVFAELPSLS 691
Query: 489 -VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
++ IG ++ + K Q + KFR G ++VATS+ EEGLDI + ++V+ F
Sbjct: 692 FIRCASMIGHNNSQEMKSSQM---QDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRF 748
Query: 548 DANVSPLRMIQRMGRT 563
D + L IQ GR
Sbjct: 749 DLAKTVLAYIQSRGRA 764
>gi|374259482|gb|AEZ02177.1| Dicer [Arabidopsis thaliana]
Length = 1886
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 84/198 (42%), Gaps = 23/198 (11%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKI--VFAAPSRPLV 166
R YQ + + A NT+ L TG GKTLIA ++I + + + K+ VF P PLV
Sbjct: 250 RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLV 309
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR---------VFFVTPQVLEKDI 217
QQ E N T G FW ++R V +T Q+L +
Sbjct: 310 YQQAEVIRN-------QTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNIL 362
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLR--ILALTATPGSKQQTI 274
+ M+ + L++DE H A + Y + E + P R I +TA+P + +
Sbjct: 363 RHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVS 422
Query: 275 QHIIDNLYISTLEYRNES 292
+ + I LE + +S
Sbjct: 423 SQVDCAIKIRNLETKLDS 440
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 430 LMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL- 488
++ +++ G +PK+ ++++L+ + T D R I+F + + A + L
Sbjct: 635 VIGAAVADGKVTPKVQSLIKLLLKYQHTAD---FRAIVFVERVVAALVLPKVFAELPSLS 691
Query: 489 -VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
++ IG ++ + K Q + KFR G ++VATS+ EEGLDI + ++V+ F
Sbjct: 692 FIRCASMIGHNNSQEMKSSQM---QDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRF 748
Query: 548 DANVSPLRMIQRMGRT 563
D + L IQ GR
Sbjct: 749 DLAKTVLAYIQSRGRA 764
>gi|171690380|ref|XP_001910115.1| hypothetical protein [Podospora anserina S mat+]
gi|170945138|emb|CAP71249.1| unnamed protein product [Podospora anserina S mat+]
Length = 1568
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY--------NFFRWFPDGKIVFAAPS 162
RDYQ + + A NT+ L TG GKTLIAA+++ N F+ P F
Sbjct: 125 RDYQLELFERAKTQNTIAVLDTGSGKTLIAALLLRWTIQNELENRFQGQPKRIAFFLVDK 184
Query: 163 RPLVMQQIEACHNIVGIPQEWTI-DMTGQISPTKRASFWKT----KRVFFVTPQVLEKDI 217
LV QQ H ++ ++++ GQ+ A FW+T T ++L + +
Sbjct: 185 VALVFQQ----HAVLTCNLDYSVAKFCGQMLDRSSAEFWETTFQENMAIVCTSEILYQCL 240
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM----SVPVQLRILALTATPGSKQ 271
M + L+ DE H N+ Y I++ + RIL +TA+P Q
Sbjct: 241 HHSYIRMDQINLLIFDECHHTKKNHPYARIIKDFYIQNEDNEARPRILGMTASPVDAQ 298
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 22/183 (12%)
Query: 409 LKQGSFARFMSKNED-IRKVKLLMQQSISHGAQSPKL------SKMLEV---LVDHFKTK 458
L+QG+F++ M +++ +R+ L++ +H + P L SK++E+ L D F ++
Sbjct: 409 LRQGAFSQLMGLDKNRVREAHELVK---NHEFEQPILDTRLFSSKVIELWKTLHDQFSSQ 465
Query: 459 DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATE---FIG----QSSGKASKGQSQKVQ 511
D R I+F R + +++ L + E IG SS ++SK S + Q
Sbjct: 466 DLVR-RCIVFVKQRNTANILVDLLKQPELKIPGLEPGILIGGGRNDSSWESSK-TSYRDQ 523
Query: 512 QAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571
+ KF+ G N I ATS+ EEGLDI + +++I FD + ++ IQ GR ++ I
Sbjct: 524 VLTIIKFKKGELNCIFATSVAEEGLDIPDCNIIIRFDLYDTLIQYIQSRGRARQEKSTYI 583
Query: 572 PHI 574
I
Sbjct: 584 HMI 586
>gi|393719361|ref|ZP_10339288.1| putative helicase [Sphingomonas echinoides ATCC 14820]
Length = 486
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 22/170 (12%)
Query: 445 SKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASK 504
+K + L+ +++D + IIFSN + +VRD L KA + G +SG+
Sbjct: 227 AKKRDTLISLLRSEDVQTG--IIFSNRKTTVRD----------LNKALQRAGFASGEIHG 274
Query: 505 GQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTG 564
Q + A L++F+ G ++VA+ + G+DI V V +DA P + R+GRTG
Sbjct: 275 DMEQAQRIAELDRFKKGEIKILVASDVAARGIDIKGVSHVFNYDAPWHPDDYVHRIGRTG 334
Query: 565 RKHDGRIPHIFK-PE----VQFVE----LSIEQYVSRGKKVKDDHAITTP 605
R I F P+ +Q +E L IE+Y + G V DD P
Sbjct: 335 RAGATGIAFTFATPDDAENIQNIEKLTGLKIERYET-GAPVADDDTPEAP 383
>gi|224068194|ref|XP_002302679.1| dicer-like protein [Populus trichocarpa]
gi|222844405|gb|EEE81952.1| dicer-like protein [Populus trichocarpa]
Length = 1817
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 8/165 (4%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKI--VFAAPSRPLV 166
R YQ + A NT+ L TG GKTLIA ++I + + KI VF P PLV
Sbjct: 289 RQYQLDVLDQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKILAVFLVPKVPLV 348
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASF-WKTKRVFFVTPQVLEKDIQSGTCLMK 225
QQ E + +M T+R ++TK+V +T Q+L ++ M+
Sbjct: 349 YQQAEVIRERGYQVGHYCGEMGQDFWDTRRWQREFETKQVLVMTAQILLNILRHSIIKME 408
Query: 226 YLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLR--ILALTATP 267
+ L++DE H A + Y + E + P + R + +TA+P
Sbjct: 409 AINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASP 453
>gi|402828050|ref|ZP_10876941.1| putative ATP-dependent RNA helicase RhlE [Slackia sp. CM382]
gi|402286651|gb|EJU35113.1| putative ATP-dependent RNA helicase RhlE [Slackia sp. CM382]
Length = 721
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 464 RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGY 523
RVI+F+ +G + L IG ATE I A + Q+Q+ + L+ FR G
Sbjct: 266 RVIVFTRTKGGADNCTKRLRKIG---IATEAI-----HADRSQAQRAR--ALDNFREGKT 315
Query: 524 NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFV 582
+V+VAT + G+D+ EVD VI +D + P + R+GRTGR G P+ + +
Sbjct: 316 HVLVATDVLSRGIDVPEVDYVINYDLPMMPEDYVHRIGRTGRAGARGYAVSFVTPDTRNL 375
Query: 583 ELSIEQYV 590
SI++++
Sbjct: 376 LKSIQKFI 383
>gi|356504203|ref|XP_003520888.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Glycine max]
Length = 1944
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 427 VKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG 486
V +++ +++ G +PK+ ++++L+ + T+D R IIF S + A +
Sbjct: 675 VDVIIGAAVADGKVTPKVQALIKILLKYQHTED---FRAIIFVERVVSALVLPKVFAELP 731
Query: 487 DL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
L VK IG ++ + + Q + KFR G ++VATS+ EEGLDI + ++V
Sbjct: 732 SLSFVKCASLIGHNNSQEMRTYQM---QDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVV 788
Query: 545 ICFDANVSPLRMIQRMGRT 563
I FD + L IQ GR
Sbjct: 789 IRFDLAKTVLAYIQSRGRA 807
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 23/198 (11%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK----IVFAAPSRPLV 166
R YQ + + + NT+ L TG GKTLIA ++I + VF P PLV
Sbjct: 289 RQYQLDVLEQSKRKNTIAFLETGAGKTLIAVLLIKSIQDSLQKQNKKMLAVFLVPKVPLV 348
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW---------KTKRVFFVTPQVLEKDI 217
QQ E + +E T G FW TK V +T Q+L +
Sbjct: 349 YQQAE-------VIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNIL 401
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLR--ILALTATPGSKQQTI 274
+ M+ + L++DE H A + Y + E + P + R + +TA+P + +
Sbjct: 402 RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKENRPSVFGMTASPVNLKGVS 461
Query: 275 QHIIDNLYISTLEYRNES 292
+ + I LE + +S
Sbjct: 462 SQVDCAIKIRNLESKLDS 479
>gi|269217166|ref|ZP_06161020.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
700122]
gi|269129303|gb|EEZ60388.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
700122]
Length = 721
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 464 RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGY 523
RVI+F+ +G + L IG ATE I A + Q+Q+ + L+ FR G
Sbjct: 266 RVIVFTRTKGGADNCTKRLRKIG---IATEAI-----HADRSQAQRAR--ALDNFREGKT 315
Query: 524 NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFV 582
+V+VAT + G+D+ EVD VI +D + P + R+GRTGR G P+ + +
Sbjct: 316 HVLVATDVLSRGIDVPEVDYVINYDLPMMPEDYVHRIGRTGRAGARGYAVSFVTPDTRNL 375
Query: 583 ELSIEQYV 590
SI++++
Sbjct: 376 LKSIQKFI 383
>gi|347734241|ref|ZP_08867292.1| DEAD/DEAH box helicase family protein [Desulfovibrio sp. A2]
gi|347517110|gb|EGY24304.1| DEAD/DEAH box helicase family protein [Desulfovibrio sp. A2]
Length = 555
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 455 FKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAV 514
F P V++F R R + LA+ G +G GK SQ+ +QA
Sbjct: 300 FVGDGPLAGAVLVFVRTRHGARRLWQQLASTG------LRVGCLQGK----LSQRRRQAT 349
Query: 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565
LE FR G Y V+VAT + GLDI V V+ +D + I R+GRTGR
Sbjct: 350 LEGFRTGRYAVLVATDVAARGLDISRVTHVVNYDVPATADAYIHRIGRTGR 400
>gi|146181280|ref|XP_001022468.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|146144241|gb|EAS02223.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 749
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 20/141 (14%)
Query: 435 ISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEF 494
+S G + +L K+LE K P +IIF+N + +V L K +
Sbjct: 574 MSEGQKKSRLQKILET------AKPP----IIIFANEKTAVEK----------LSKILDR 613
Query: 495 IGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554
G + G++Q+ ++A ++ F+ G Y+++VAT +G GL + V +VI FDA +
Sbjct: 614 WGWQNVIYHGGKTQQQREAAVDGFKKGKYDILVATDLGARGLHVDGVKMVINFDAPKNIK 673
Query: 555 RMIQRMGRTGRKHDGRIPHIF 575
I R GRTGR I + F
Sbjct: 674 DFIHRTGRTGRAGKRGIAYTF 694
>gi|358370394|dbj|GAA87005.1| dicer-like protein 2-1 [Aspergillus kawachii IFO 4308]
Length = 1396
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK----ATEFIG 496
SPK +LE L TK + +IF+ R +V +M L +I + K F+G
Sbjct: 368 SPKFRSLLEFL----DTKGEPNFSGLIFAKQRATV-SVMEKLLSIHPVTKHRFRCASFVG 422
Query: 497 QSSGKASKGQSQ----KVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
S G + + ++Q+ L +FR G N+I+AT + EEG+DI +V+C+D +
Sbjct: 423 WSGGGSKDVLGELLDARMQRDTLSEFRTGQKNLIIATDVLEEGIDISACSVVVCYDKPPN 482
Query: 553 PLRMIQRMGR 562
+QR GR
Sbjct: 483 LKSFVQRRGR 492
Score = 43.9 bits (102), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 19/187 (10%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170
R YQ + + +L N +V + TG GKT IA + I P I F P+ L +QQ
Sbjct: 20 RSYQVEMFEASLKENIIVTMGTGSGKTHIALLRIMKELESNPHKLIWFLTPTVALCLQQF 79
Query: 171 EACHNIVGIPQEWTIDMTGQISPTKRASFW----KTKRVFFVTPQVLEKDIQSGTCLMKY 226
+ + + + T+ ++ W K +V T VL + G +
Sbjct: 80 KFISDNIPAVRARTLTSLDKVELWTEQPIWDAILKEMQVVVSTHAVLADAMSHGFVKITQ 139
Query: 227 LVCLVIDEAHRATGNYAYCTAIRELM----------SVPVQLRILALTATP--GSKQQTI 274
L ++ DEAH + + + +VP +IL LTA+P S +Q +
Sbjct: 140 LGLIIFDEAHHCMRRHPANKIMEDFYHPALERHGAEAVP---KILGLTASPVVRSNKQEL 196
Query: 275 QHIIDNL 281
+ NL
Sbjct: 197 LKVESNL 203
>gi|307105763|gb|EFN54011.1| hypothetical protein CHLNCDRAFT_58365 [Chlorella variabilis]
Length = 1346
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 16/223 (7%)
Query: 103 IYPVNVPVRDYQ-FAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161
+ P +R YQ A+T A N +V TG GKT+IA + P + VF AP
Sbjct: 676 VGPAPQALRGYQQRAVTLAATGRNMIVVGDTGSGKTVIAVARAVDMTLADPSARTVFLAP 735
Query: 162 SRPLVMQQIEACHNIVGIPQ--EWTIDMTGQ-----ISPTKRASFWKTKRVFFVTPQVLE 214
+ LV QQ + P + TG+ ++P + V +TPQ+
Sbjct: 736 TVQLVQQQTAV---FLSYPSFSSGALRATGRTSDNPVAPRDWQRLLEDNHVVVMTPQLFL 792
Query: 215 KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQ-- 272
+ +G + LV+DE H A ++ +R S ++L LTA+P S+
Sbjct: 793 NMLNAGAAHFHQISLLVVDECHHAQADHPVNKVMRHNRSSARTTQVLGLTASPASRDSLD 852
Query: 273 -TIQ--HIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM 312
T+Q H ++ + L +ESD+++ + V + E + V++
Sbjct: 853 ATLQALHQLELNLDAQLYVVDESDEELRAAVPEVQGEEVLVDL 895
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 21/160 (13%)
Query: 442 PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATE------ 493
PK + + L++ ++ D H I+F R +VR + ++ DL V+A+
Sbjct: 1030 PKFEALRDFLLE-YRGADTFHG--IVFCRTREAVRSLARLISDTPDLQFVEASRALLVYR 1086
Query: 494 FIGQSSGKASKG------QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547
F+G + + + + K Q+A +E FR G ++V+TS GEEG+D+ + V+ +
Sbjct: 1087 FMGHGNRRGAGSGGGGGGMTSKEQRAAMEAFRQPGCRLLVSTSAGEEGIDVPRCEFVVRY 1146
Query: 548 DANVSPLRMIQRMGRTGRKHDGRIPHIFK---PEVQFVEL 584
A + +Q GR RK R I + PE+Q EL
Sbjct: 1147 SAAQTGRERVQSAGRA-RKLGSRFVEIVERSPPELQAAEL 1185
>gi|451823243|ref|YP_007459517.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
gi|451776043|gb|AGF47084.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
Length = 458
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 22/159 (13%)
Query: 442 PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGK 501
P +K+L +L F + VIIF+N + LATI K + F+ + K
Sbjct: 249 PNQNKLLAIL---FILQSKPLESVIIFTNTK---------LATI----KLSSFLFSKNIK 292
Query: 502 ASK--GQSQKVQQAV-LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558
G ++ + + LE FR G NV+VAT + GLD++ V VI FD +P +
Sbjct: 293 CDSIHGDKNQIDRTIALENFRNGSLNVLVATDVAARGLDVVGVSYVINFDVPFNPEDYVH 352
Query: 559 RMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVSRGKKV 596
R+GRTGR ++ G + E + L+IE++ G K+
Sbjct: 353 RIGRTGRANNKGSAISLCSYEEETCLLNIEKFT--GSKI 389
>gi|147899364|ref|NP_001082035.1| RNA helicase II/Gu [Xenopus laevis]
gi|16975508|gb|AAG22819.2|AF302423_1 RNA helicase II/Gu [Xenopus laevis]
Length = 759
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
++ H A S+ VL D + H + IIF + + + + ++
Sbjct: 403 TVEHLAIECTRSQKAAVLGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSL-------- 454
Query: 494 FIGQSSGKASKGQ-SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
+ S K+ G QK ++ VL+ FR G + V++AT++ GLDI EVDLV+ + A
Sbjct: 455 ---KQSAKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKE 511
Query: 553 PLRMIQRMGRTGR 565
+ R GRTGR
Sbjct: 512 ADAYVHRSGRTGR 524
>gi|356571277|ref|XP_003553805.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Glycine max]
Length = 1942
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 427 VKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG 486
V +++ +++ G +PK+ ++++L+ + T+D R IIF S + A +
Sbjct: 673 VDVIIGAAVADGKVTPKVQALIKILLKYQHTED---FRAIIFVERVVSALVLPKVFAELP 729
Query: 487 DL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544
L VK IG ++ + + Q + KFR G ++VATS+ EEGLDI + ++V
Sbjct: 730 SLSFVKCASLIGHNNSQEMRTYQM---QDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVV 786
Query: 545 ICFDANVSPLRMIQRMGRT 563
I FD + L IQ GR
Sbjct: 787 IRFDLAKTVLAYIQSRGRA 805
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 23/198 (11%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY----NFFRWFPDGKIVFAAPSRPLV 166
R YQ + + A NT+ L TG GKTLIA ++I + + VF P PLV
Sbjct: 287 RQYQLDVLEQAKRKNTIAFLETGAGKTLIAVLLIKSIQESLHKQNKKMLAVFLVPKVPLV 346
Query: 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW---------KTKRVFFVTPQVLEKDI 217
QQ E + +E T G FW TK V +T Q+L +
Sbjct: 347 YQQAE-------VIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNIL 399
Query: 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLR--ILALTATPGSKQQTI 274
+ M+ + L++DE H A + Y + E + P + R + +TA+P + +
Sbjct: 400 RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKENRPSVFGMTASPVNLKGVS 459
Query: 275 QHIIDNLYISTLEYRNES 292
+ + I LE + +S
Sbjct: 460 SQVDCAIKIRNLESKLDS 477
>gi|121945885|dbj|BAF44661.1| RNA helicase [Neobenedenia girellae]
Length = 634
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
++ +G + KL ++L+ +D++K + ++I+F R + + + +AL+ + V A E
Sbjct: 441 AVPNGDKHDKLLELLKTDIDNYKQNNVL-KKIIVFVERRRTAQQVASALSM--EEVPAVE 497
Query: 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553
G+ SQ + + +FR G V+VAT+I GLDI+ VD VI +D
Sbjct: 498 LQGE--------LSQMERDESMHRFRYGDAFVLVATAIAARGLDIVGVDHVINYDLPSHI 549
Query: 554 LRMIQRMGRTGR-KHDGRIPHIF 575
+ R+GRTGR H GR F
Sbjct: 550 YEYVHRIGRTGRVGHLGRATSFF 572
>gi|94450854|gb|ABF19797.1| dicer-like 2 spliceform 1 [Arabidopsis thaliana]
Length = 1386
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 78/174 (44%), Gaps = 25/174 (14%)
Query: 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNF---FRWFPDGKIVFAAPSRPLVM 167
R YQ + A+ NT+V L TG GKTLIA +++ ++ FR VF P LV
Sbjct: 23 RSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYLFRKPSPCFCVFLVPQVVLVT 82
Query: 168 QQIEAC--HNIVGIPQEWTIDMTGQISPTKRASFWKTK----RVFFVTPQVLEKDIQSGT 221
QQ EA H + + W DM + S WK + V +TP +L ++
Sbjct: 83 QQAEALKMHTDLKVGMYWG-DMGVDFWDS---STWKQEVDKYEVLVMTPAILLDALRHSF 138
Query: 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELM---------SVPVQLRILALTAT 266
+ + L++DE H A G + Y +RE +VP RI +TA+
Sbjct: 139 LSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVP---RIFGMTAS 189
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 23/159 (14%)
Query: 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555
G +SG + Q++K Q ++E FR G N+IVATSI EEGLD+ +LVI FD +
Sbjct: 422 GNNSGL--QNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICS 479
Query: 556 MIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVKD---DHAIT--------- 603
IQ GR ++ + + ++ S+ +Y+S GK++++ DH++
Sbjct: 480 FIQSRGRARMQNSDYLMMVESGDLLTQSRSM-KYLSGGKRMREESLDHSLVPCPPLPDDS 538
Query: 604 -TPIFKEKLTAAETDL---IAKYFHPT----SDSTWRPS 634
P+F+ + T A L ++ +H SD ++P+
Sbjct: 539 DEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPA 577
>gi|49119283|gb|AAH73332.1| LOC398189 protein [Xenopus laevis]
Length = 727
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493
++ H A S+ VL D + H + IIF + + + + ++
Sbjct: 371 TVEHLAIECTRSQKAAVLGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSL-------- 422
Query: 494 FIGQSSGKASKGQ-SQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552
+ S K+ G QK ++ VL+ FR G + V++AT++ GLDI EVDLV+ + A
Sbjct: 423 ---KQSAKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKE 479
Query: 553 PLRMIQRMGRTGR 565
+ R GRTGR
Sbjct: 480 ADAYVHRSGRTGR 492
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,200,359,714
Number of Sequences: 23463169
Number of extensions: 786630321
Number of successful extensions: 2921449
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 15420
Number of HSP's successfully gapped in prelim test: 8052
Number of HSP's that attempted gapping in prelim test: 2887535
Number of HSP's gapped (non-prelim): 37133
length of query: 1165
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 1011
effective length of database: 8,745,867,341
effective search space: 8842071881751
effective search space used: 8842071881751
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 83 (36.6 bits)