Query 037446
Match_columns 1165
No_of_seqs 535 out of 3509
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 12:20:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1111 MPH1 ERCC4-like helica 100.0 7.7E-60 1.7E-64 534.3 45.8 470 99-578 5-481 (542)
2 KOG0354 DEAD-box like helicase 100.0 1.4E-51 3.1E-56 491.9 40.6 467 97-577 50-528 (746)
3 KOG0330 ATP-dependent RNA heli 100.0 2.4E-48 5.2E-53 425.6 29.1 361 79-594 57-423 (476)
4 KOG0331 ATP-dependent RNA heli 100.0 1.3E-47 2.9E-52 446.8 33.5 357 84-590 92-460 (519)
5 KOG0338 ATP-dependent RNA heli 100.0 2.2E-46 4.7E-51 420.1 26.6 347 83-582 181-537 (691)
6 PTZ00110 helicase; Provisional 100.0 1.6E-44 3.5E-49 440.7 36.7 367 75-592 122-498 (545)
7 COG0513 SrmB Superfamily II DN 100.0 7.1E-45 1.5E-49 440.0 32.0 358 83-593 29-396 (513)
8 PRK13766 Hef nuclease; Provisi 100.0 4.8E-43 1E-47 447.3 50.0 466 100-577 6-478 (773)
9 PRK04837 ATP-dependent RNA hel 100.0 5.7E-44 1.2E-48 425.6 32.7 357 81-592 6-376 (423)
10 PLN00206 DEAD-box ATP-dependen 100.0 8.6E-44 1.9E-48 432.9 34.0 376 63-591 101-488 (518)
11 KOG0342 ATP-dependent RNA heli 100.0 1.8E-44 3.9E-49 406.2 24.9 354 83-587 82-446 (543)
12 PRK10590 ATP-dependent RNA hel 100.0 2.2E-43 4.8E-48 423.8 34.6 353 83-591 1-365 (456)
13 KOG0333 U5 snRNP-like RNA heli 100.0 1E-43 2.3E-48 400.3 27.0 366 70-590 232-636 (673)
14 PRK11776 ATP-dependent RNA hel 100.0 8.8E-43 1.9E-47 419.7 35.4 352 83-591 4-362 (460)
15 PRK11192 ATP-dependent RNA hel 100.0 1.9E-42 4.2E-47 413.9 36.8 354 84-591 2-365 (434)
16 TIGR03817 DECH_helic helicase/ 100.0 2.8E-42 6.2E-47 432.4 38.6 522 84-761 16-585 (742)
17 KOG0343 RNA Helicase [RNA proc 100.0 2.2E-43 4.7E-48 398.9 25.6 357 81-588 67-433 (758)
18 KOG0340 ATP-dependent RNA heli 100.0 6.9E-43 1.5E-47 378.8 27.9 397 82-628 6-415 (442)
19 PRK01297 ATP-dependent RNA hel 100.0 1.2E-41 2.7E-46 411.1 40.0 356 82-593 86-457 (475)
20 PRK04537 ATP-dependent RNA hel 100.0 3.6E-42 7.8E-47 421.5 34.6 354 83-591 9-377 (572)
21 PRK11634 ATP-dependent RNA hel 100.0 6.8E-42 1.5E-46 421.4 34.7 352 83-590 6-364 (629)
22 KOG0348 ATP-dependent RNA heli 100.0 9E-43 1.9E-47 393.2 23.9 394 80-590 133-566 (708)
23 KOG0328 Predicted ATP-dependen 100.0 7.2E-42 1.6E-46 360.3 22.8 358 80-591 24-386 (400)
24 KOG0345 ATP-dependent RNA heli 100.0 6.6E-41 1.4E-45 374.5 27.3 346 83-580 4-366 (567)
25 KOG0326 ATP-dependent RNA heli 100.0 2E-41 4.3E-46 362.0 18.5 360 77-593 79-444 (459)
26 PTZ00424 helicase 45; Provisio 100.0 1.3E-39 2.9E-44 385.5 35.6 353 83-590 28-386 (401)
27 KOG0335 ATP-dependent RNA heli 100.0 9.7E-41 2.1E-45 383.1 23.4 372 74-592 65-458 (482)
28 KOG0347 RNA helicase [RNA proc 100.0 4.7E-41 1E-45 380.3 17.8 380 83-595 181-587 (731)
29 KOG0336 ATP-dependent RNA heli 100.0 9.9E-40 2.2E-44 357.7 24.1 353 77-583 213-577 (629)
30 KOG0341 DEAD-box protein abstr 100.0 2.1E-40 4.5E-45 360.8 16.2 370 65-590 152-541 (610)
31 KOG0346 RNA helicase [RNA proc 100.0 1E-39 2.2E-44 361.7 21.0 357 83-592 19-424 (569)
32 PLN03137 ATP-dependent DNA hel 100.0 1.4E-37 3E-42 387.0 37.3 327 88-579 443-788 (1195)
33 KOG0339 ATP-dependent RNA heli 100.0 4.3E-38 9.3E-43 352.8 27.6 364 74-590 214-587 (731)
34 TIGR00614 recQ_fam ATP-depende 100.0 1.1E-37 2.4E-42 375.8 32.6 357 109-626 11-382 (470)
35 KOG0332 ATP-dependent RNA heli 100.0 9.2E-38 2E-42 340.6 22.6 362 75-592 82-458 (477)
36 KOG0350 DEAD-box ATP-dependent 100.0 1E-36 2.2E-41 342.7 24.0 376 89-580 144-542 (620)
37 PRK11057 ATP-dependent DNA hel 100.0 8.2E-36 1.8E-40 368.9 33.6 354 109-628 25-394 (607)
38 KOG4284 DEAD box protein [Tran 100.0 1.2E-36 2.6E-41 348.4 18.7 357 75-578 17-379 (980)
39 TIGR01389 recQ ATP-dependent D 100.0 4.9E-35 1.1E-39 362.5 33.9 353 109-627 13-382 (591)
40 PRK02362 ski2-like helicase; P 100.0 8.3E-35 1.8E-39 368.3 31.4 364 83-590 1-408 (737)
41 PLN03142 Probable chromatin-re 100.0 4.6E-34 1E-38 360.8 35.3 406 109-576 169-594 (1033)
42 PRK13767 ATP-dependent helicas 100.0 4.5E-34 9.7E-39 365.2 35.7 342 88-567 17-385 (876)
43 KOG0385 Chromatin remodeling c 100.0 3.7E-34 8.1E-39 334.6 31.1 405 108-576 166-594 (971)
44 PRK04914 ATP-dependent helicas 100.0 7.3E-34 1.6E-38 358.2 34.9 437 106-593 149-618 (956)
45 TIGR00603 rad25 DNA repair hel 100.0 8.6E-34 1.9E-38 346.7 33.8 323 108-570 254-591 (732)
46 KOG0334 RNA helicase [RNA proc 100.0 2E-34 4.3E-39 350.7 26.5 363 74-590 356-732 (997)
47 KOG0327 Translation initiation 100.0 9.6E-35 2.1E-39 320.8 19.8 350 84-590 27-382 (397)
48 KOG0337 ATP-dependent RNA heli 100.0 3.2E-35 7E-40 325.0 15.6 355 82-590 20-380 (529)
49 PHA02558 uvsW UvsW helicase; P 100.0 2.7E-33 6E-38 339.6 33.0 329 107-570 112-443 (501)
50 KOG0344 ATP-dependent RNA heli 100.0 1.1E-33 2.4E-38 326.2 24.9 367 71-590 120-507 (593)
51 KOG0392 SNF2 family DNA-depend 100.0 1.6E-32 3.5E-37 332.4 33.2 465 88-594 938-1464(1549)
52 COG0514 RecQ Superfamily II DN 100.0 4.3E-33 9.4E-38 331.0 26.9 357 109-627 17-388 (590)
53 PRK00254 ski2-like helicase; P 100.0 5.7E-33 1.2E-37 350.7 29.1 349 84-578 2-388 (720)
54 PRK10917 ATP-dependent DNA hel 100.0 1.3E-32 2.8E-37 344.0 31.0 307 107-576 259-587 (681)
55 TIGR00580 mfd transcription-re 100.0 1.8E-32 3.8E-37 347.2 30.2 306 108-577 450-769 (926)
56 KOG0387 Transcription-coupled 100.0 1.3E-32 2.7E-37 323.8 26.3 415 102-576 196-653 (923)
57 TIGR00643 recG ATP-dependent D 100.0 6.2E-32 1.3E-36 335.8 32.0 308 108-575 234-563 (630)
58 PRK01172 ski2-like helicase; P 100.0 3.9E-32 8.5E-37 341.5 30.6 341 84-575 2-375 (674)
59 KOG0384 Chromodomain-helicase 100.0 2.5E-32 5.4E-37 332.8 24.8 406 108-576 369-806 (1373)
60 COG1061 SSL2 DNA or RNA helica 100.0 2.3E-31 4.9E-36 317.2 30.6 340 104-568 31-378 (442)
61 PRK10689 transcription-repair 100.0 4.6E-31 1E-35 340.9 32.9 306 108-577 599-918 (1147)
62 KOG4150 Predicted ATP-dependen 100.0 2.4E-32 5.1E-37 308.6 16.5 494 109-759 286-840 (1034)
63 COG1201 Lhr Lhr-like helicases 100.0 3.2E-31 7E-36 325.3 27.1 328 88-567 7-349 (814)
64 COG1205 Distinct helicase fami 100.0 3.7E-31 8E-36 333.4 26.7 349 85-575 51-418 (851)
65 PRK09751 putative ATP-dependen 100.0 1.2E-30 2.6E-35 338.0 27.8 318 128-567 1-372 (1490)
66 KOG0389 SNF2 family DNA-depend 100.0 1.7E-30 3.6E-35 305.5 25.4 422 107-576 397-883 (941)
67 TIGR02621 cas3_GSU0051 CRISPR- 100.0 9.9E-30 2.1E-34 313.9 26.2 303 110-568 16-379 (844)
68 KOG1002 Nucleotide excision re 100.0 1.3E-28 2.8E-33 275.5 32.4 487 102-619 175-788 (791)
69 TIGR01587 cas3_core CRISPR-ass 100.0 9.4E-29 2E-33 288.6 27.3 290 125-568 1-321 (358)
70 KOG0390 DNA repair protein, SN 100.0 5.7E-28 1.2E-32 293.0 33.6 423 109-576 238-702 (776)
71 COG1204 Superfamily II helicas 100.0 2.1E-28 4.5E-33 304.6 30.1 344 89-575 16-405 (766)
72 PHA02653 RNA helicase NPH-II; 100.0 1.6E-28 3.5E-33 302.0 26.9 321 108-579 159-515 (675)
73 KOG0329 ATP-dependent RNA heli 100.0 2.5E-29 5.4E-34 262.1 15.6 183 84-270 43-230 (387)
74 COG1202 Superfamily II helicas 100.0 1.9E-28 4.1E-33 279.2 23.9 344 83-582 194-557 (830)
75 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.2E-27 4.7E-32 298.3 32.0 310 112-580 5-338 (819)
76 PRK11664 ATP-dependent RNA hel 100.0 1E-27 2.2E-32 302.0 28.1 313 109-580 5-341 (812)
77 PRK09401 reverse gyrase; Revie 100.0 1.1E-27 2.3E-32 310.4 26.9 294 108-566 79-431 (1176)
78 PRK09200 preprotein translocas 100.0 6.3E-27 1.4E-31 289.2 31.3 422 109-583 78-546 (790)
79 KOG0391 SNF2 family DNA-depend 100.0 4.1E-27 9E-32 281.9 28.2 219 109-340 615-844 (1958)
80 TIGR03714 secA2 accessory Sec 100.0 5.8E-27 1.3E-31 286.9 30.4 421 110-583 69-542 (762)
81 KOG0351 ATP-dependent DNA heli 100.0 7.9E-28 1.7E-32 301.0 22.1 356 109-626 264-644 (941)
82 TIGR03158 cas3_cyano CRISPR-as 100.0 1.1E-26 2.4E-31 270.4 30.3 312 113-564 1-357 (357)
83 PRK12898 secA preprotein trans 100.0 3.6E-27 7.7E-32 285.8 26.3 423 109-583 103-591 (656)
84 PRK11448 hsdR type I restricti 100.0 1.4E-26 3E-31 298.5 30.6 357 107-570 411-806 (1123)
85 KOG4439 RNA polymerase II tran 100.0 1.5E-26 3.2E-31 269.1 26.3 446 108-576 324-853 (901)
86 TIGR00963 secA preprotein tran 99.9 3.6E-27 7.8E-32 286.9 22.2 423 111-583 58-522 (745)
87 KOG0352 ATP-dependent DNA heli 99.9 7.9E-27 1.7E-31 258.0 21.6 313 113-577 24-361 (641)
88 PRK14701 reverse gyrase; Provi 99.9 2.2E-26 4.8E-31 303.7 27.8 296 110-568 80-445 (1638)
89 KOG0386 Chromatin remodeling c 99.9 9E-27 1.9E-31 279.9 19.5 418 109-575 394-832 (1157)
90 KOG0388 SNF2 family DNA-depend 99.9 7E-26 1.5E-30 261.7 20.3 442 108-576 566-1149(1185)
91 PRK11131 ATP-dependent RNA hel 99.9 6.7E-25 1.4E-29 280.4 29.5 321 101-579 66-412 (1294)
92 TIGR01054 rgy reverse gyrase. 99.9 8.6E-25 1.9E-29 284.0 28.5 279 109-552 78-410 (1171)
93 KOG0353 ATP-dependent DNA heli 99.9 4E-25 8.8E-30 240.6 21.2 308 88-558 77-403 (695)
94 COG1200 RecG RecG-like helicas 99.9 8.2E-25 1.8E-29 259.5 25.5 310 107-579 260-592 (677)
95 PRK05580 primosome assembly pr 99.9 5.8E-24 1.3E-28 265.5 34.5 150 107-268 142-305 (679)
96 KOG0952 DNA/RNA helicase MER3/ 99.9 2.2E-24 4.8E-29 260.6 27.7 337 109-578 110-491 (1230)
97 TIGR00595 priA primosomal prot 99.9 4.1E-23 8.9E-28 249.5 27.0 130 127-268 1-140 (505)
98 TIGR01967 DEAH_box_HrpA ATP-de 99.9 6.1E-23 1.3E-27 263.6 29.1 324 102-579 60-405 (1283)
99 KOG0349 Putative DEAD-box RNA 99.9 2.7E-24 6E-29 237.7 13.5 310 155-574 288-611 (725)
100 PRK13104 secA preprotein trans 99.9 7.6E-23 1.7E-27 252.3 25.7 426 109-583 82-592 (896)
101 TIGR00348 hsdR type I site-spe 99.9 4.7E-22 1E-26 248.2 31.4 367 107-570 236-639 (667)
102 KOG1000 Chromatin remodeling p 99.9 8.4E-22 1.8E-26 222.1 27.9 391 110-574 199-596 (689)
103 KOG0948 Nuclear exosomal RNA h 99.9 1.3E-23 2.8E-28 245.6 13.4 367 107-577 127-538 (1041)
104 COG4096 HsdR Type I site-speci 99.9 1.1E-22 2.4E-27 243.6 19.5 345 106-567 162-526 (875)
105 PRK12904 preprotein translocas 99.9 5.1E-22 1.1E-26 245.0 25.5 421 109-582 81-577 (830)
106 COG0553 HepA Superfamily II DN 99.9 2.6E-21 5.7E-26 250.9 32.8 426 108-577 337-818 (866)
107 PRK09694 helicase Cas3; Provis 99.9 2.8E-21 6E-26 243.4 30.6 334 107-568 284-664 (878)
108 PRK12906 secA preprotein trans 99.9 5.5E-22 1.2E-26 243.9 22.7 423 108-582 79-557 (796)
109 KOG0947 Cytoplasmic exosomal R 99.9 7.1E-22 1.5E-26 236.2 18.4 376 108-578 296-723 (1248)
110 PRK12899 secA preprotein trans 99.9 3.2E-20 6.8E-25 228.6 32.5 148 88-240 68-229 (970)
111 COG1197 Mfd Transcription-repa 99.9 1.1E-20 2.5E-25 235.3 28.4 307 109-580 594-915 (1139)
112 COG4581 Superfamily II RNA hel 99.9 5.4E-21 1.2E-25 238.3 23.9 375 106-578 116-537 (1041)
113 KOG0951 RNA helicase BRR2, DEA 99.9 7E-21 1.5E-25 232.4 23.9 320 109-567 309-688 (1674)
114 cd00268 DEADc DEAD-box helicas 99.9 8.5E-21 1.8E-25 203.6 22.2 181 85-271 1-188 (203)
115 PRK13107 preprotein translocas 99.9 4.3E-20 9.3E-25 227.3 29.2 411 123-583 95-596 (908)
116 COG4098 comFA Superfamily II D 99.9 2E-19 4.4E-24 196.1 29.1 316 109-587 97-425 (441)
117 KOG1015 Transcription regulato 99.9 3.9E-20 8.5E-25 219.6 24.1 134 439-576 1123-1272(1567)
118 KOG1123 RNA polymerase II tran 99.8 5.1E-20 1.1E-24 207.6 15.3 321 108-568 301-636 (776)
119 PF00270 DEAD: DEAD/DEAH box h 99.8 1.8E-19 3.9E-24 186.9 18.2 157 112-269 2-164 (169)
120 PRK12900 secA preprotein trans 99.8 3.2E-18 7E-23 211.5 25.4 129 439-583 579-716 (1025)
121 KOG0950 DNA polymerase theta/e 99.8 1E-18 2.2E-23 211.6 20.4 343 109-579 223-612 (1008)
122 TIGR00596 rad1 DNA repair prot 99.8 3.9E-17 8.4E-22 204.4 28.8 372 197-577 2-513 (814)
123 KOG0949 Predicted helicase, DE 99.8 1.3E-17 2.8E-22 200.3 20.9 168 108-279 510-682 (1330)
124 TIGR00631 uvrb excinuclease AB 99.8 9.7E-17 2.1E-21 198.8 29.2 136 440-589 424-564 (655)
125 COG1198 PriA Primosomal protei 99.8 7.6E-17 1.7E-21 198.0 25.1 169 88-268 160-360 (730)
126 COG1643 HrpA HrpA-like helicas 99.7 1.3E-16 2.7E-21 198.8 25.3 316 106-579 47-388 (845)
127 PRK05298 excinuclease ABC subu 99.7 8.1E-16 1.8E-20 191.9 31.5 123 442-578 430-557 (652)
128 KOG0922 DEAH-box RNA helicase 99.7 1.7E-16 3.8E-21 187.3 22.4 317 108-578 50-390 (674)
129 PRK13103 secA preprotein trans 99.7 2.3E-15 5.1E-20 186.0 30.9 427 109-582 82-595 (913)
130 COG1203 CRISPR-associated heli 99.7 2.6E-16 5.6E-21 198.9 22.7 317 101-567 187-536 (733)
131 smart00487 DEXDc DEAD-like hel 99.7 6.7E-16 1.5E-20 162.3 19.3 166 108-274 7-177 (201)
132 PRK12326 preprotein translocas 99.7 3.9E-15 8.4E-20 180.1 27.5 423 108-582 77-551 (764)
133 PF04851 ResIII: Type III rest 99.7 1.5E-16 3.2E-21 166.8 12.9 152 108-269 2-184 (184)
134 KOG1001 Helicase-like transcri 99.7 5.8E-16 1.3E-20 190.2 18.6 135 440-590 520-656 (674)
135 COG4889 Predicted helicase [Ge 99.7 4.1E-16 8.9E-21 184.9 16.3 156 108-268 160-351 (1518)
136 TIGR01407 dinG_rel DnaQ family 99.7 1.8E-14 3.9E-19 185.7 31.0 100 462-570 674-805 (850)
137 KOG0923 mRNA splicing factor A 99.6 4E-15 8.7E-20 173.5 18.9 315 108-578 264-606 (902)
138 KOG0920 ATP-dependent RNA heli 99.6 1.7E-14 3.7E-19 179.1 25.1 353 106-578 170-544 (924)
139 COG0556 UvrB Helicase subunit 99.6 1.4E-13 3.1E-18 158.3 29.5 136 441-590 429-569 (663)
140 COG1110 Reverse gyrase [DNA re 99.6 1.9E-14 4.1E-19 175.7 23.5 132 104-240 77-217 (1187)
141 cd00046 DEXDc DEAD-like helica 99.6 6.7E-15 1.5E-19 145.7 16.1 143 124-267 1-144 (144)
142 PRK12903 secA preprotein trans 99.6 3.8E-14 8.2E-19 173.6 25.0 128 439-583 407-544 (925)
143 KOG1016 Predicted DNA helicase 99.6 6.5E-14 1.4E-18 164.5 21.9 483 125-627 284-895 (1387)
144 cd00079 HELICc Helicase superf 99.6 1.1E-14 2.4E-19 144.0 12.5 116 442-571 12-128 (131)
145 PF00176 SNF2_N: SNF2 family N 99.6 1.5E-14 3.2E-19 164.1 14.0 167 113-285 1-191 (299)
146 KOG0924 mRNA splicing factor A 99.6 8.2E-14 1.8E-18 162.7 20.0 309 110-578 357-697 (1042)
147 PF00271 Helicase_C: Helicase 99.5 1.7E-14 3.6E-19 130.8 8.0 77 481-567 2-78 (78)
148 CHL00122 secA preprotein trans 99.5 7.7E-13 1.7E-17 163.4 23.5 127 110-240 77-210 (870)
149 KOG0926 DEAH-box RNA helicase 99.5 4.6E-13 9.9E-18 158.9 18.5 145 114-267 261-424 (1172)
150 PRK12902 secA preprotein trans 99.5 1.7E-12 3.7E-17 160.0 23.1 128 109-240 85-219 (939)
151 COG0610 Type I site-specific r 99.5 2.9E-12 6.2E-17 165.3 26.0 137 124-268 274-414 (962)
152 PRK07246 bifunctional ATP-depe 99.5 1.4E-11 2.9E-16 157.4 28.6 103 461-576 646-781 (820)
153 PRK12901 secA preprotein trans 99.4 1.1E-10 2.4E-15 145.4 28.1 128 439-582 609-745 (1112)
154 TIGR03117 cas_csf4 CRISPR-asso 99.4 2.4E-10 5.1E-15 140.4 29.7 54 124-177 17-70 (636)
155 smart00490 HELICc helicase sup 99.4 2.1E-12 4.6E-17 116.7 8.9 81 477-567 2-82 (82)
156 KOG0925 mRNA splicing factor A 99.4 8.4E-12 1.8E-16 141.8 15.4 325 84-578 26-387 (699)
157 PRK08074 bifunctional ATP-depe 99.4 1.8E-10 4E-15 149.6 29.6 96 445-551 738-835 (928)
158 KOG0953 Mitochondrial RNA heli 99.3 2E-11 4.4E-16 141.1 15.5 115 461-587 357-486 (700)
159 PRK14873 primosome assembly pr 99.3 3.6E-10 7.7E-15 140.5 25.2 131 127-268 164-304 (665)
160 KOG0383 Predicted helicase [Ge 99.2 2.1E-12 4.6E-17 157.1 0.4 361 109-535 295-696 (696)
161 TIGR02562 cas3_yersinia CRISPR 99.2 2.9E-09 6.2E-14 133.7 25.7 168 101-270 400-637 (1110)
162 COG1199 DinG Rad3-related DNA 99.1 2.8E-09 6E-14 134.9 22.4 113 443-570 463-608 (654)
163 KOG0951 RNA helicase BRR2, DEA 99.1 9.4E-10 2E-14 136.6 16.1 148 112-270 1146-1302(1674)
164 PRK11747 dinG ATP-dependent DN 99.1 5.8E-09 1.3E-13 131.8 22.2 92 443-551 519-616 (697)
165 COG0653 SecA Preprotein transl 99.0 4.1E-08 8.8E-13 121.7 24.2 126 439-580 410-547 (822)
166 PF02399 Herpes_ori_bp: Origin 98.9 3.7E-08 8E-13 121.3 20.1 135 125-270 51-193 (824)
167 TIGR00604 rad3 DNA repair heli 98.9 6.2E-08 1.4E-12 123.2 20.7 67 110-176 11-83 (705)
168 smart00489 DEXDc3 DEAD-like he 98.8 2.9E-08 6.2E-13 112.8 13.9 71 106-176 5-84 (289)
169 smart00488 DEXDc2 DEAD-like he 98.8 2.9E-08 6.2E-13 112.8 13.9 71 106-176 5-84 (289)
170 PF07652 Flavi_DEAD: Flaviviru 98.8 1.3E-08 2.8E-13 101.7 8.6 132 125-270 6-139 (148)
171 KOG0921 Dosage compensation co 98.5 1.5E-06 3.3E-11 105.7 16.8 159 105-269 374-537 (1282)
172 PRK15483 type III restriction- 98.5 8.4E-07 1.8E-11 112.5 14.4 141 125-269 61-240 (986)
173 COG3587 Restriction endonuclea 98.4 3E-06 6.4E-11 103.6 15.8 140 125-270 76-245 (985)
174 PF06862 DUF1253: Protein of u 98.3 0.00018 4E-09 85.2 26.1 98 460-567 298-397 (442)
175 PF07517 SecA_DEAD: SecA DEAD- 98.2 1.2E-05 2.6E-10 89.7 12.5 129 107-239 75-210 (266)
176 PF13872 AAA_34: P-loop contai 98.1 1.7E-05 3.6E-10 88.9 12.5 142 124-270 63-223 (303)
177 PF13086 AAA_11: AAA domain; P 98.1 1.3E-05 2.9E-10 87.1 10.9 67 109-175 1-75 (236)
178 KOG0298 DEAD box-containing he 98.0 7.8E-06 1.7E-10 103.5 7.5 157 124-285 375-568 (1394)
179 KOG0952 DNA/RNA helicase MER3/ 97.9 3.6E-06 7.8E-11 104.6 1.8 143 124-270 944-1096(1230)
180 PF09848 DUF2075: Uncharacteri 97.9 5.2E-05 1.1E-09 88.9 10.4 108 126-254 4-117 (352)
181 KOG2340 Uncharacterized conser 97.8 0.0024 5.2E-08 75.1 22.5 119 438-568 530-653 (698)
182 KOG1513 Nuclear helicase MOP-3 97.6 0.0051 1.1E-07 75.1 20.5 155 110-268 265-455 (1300)
183 KOG0442 Structure-specific end 97.5 0.027 5.8E-07 70.2 26.6 363 110-484 14-400 (892)
184 PF13307 Helicase_C_2: Helicas 97.5 0.00018 3.8E-09 75.4 6.3 81 461-551 8-92 (167)
185 PF12340 DUF3638: Protein of u 97.4 0.00058 1.3E-08 74.2 9.8 133 106-240 20-186 (229)
186 PF02562 PhoH: PhoH-like prote 97.4 0.00048 1E-08 74.2 9.1 56 110-165 5-61 (205)
187 KOG1802 RNA helicase nonsense 97.4 0.00072 1.6E-08 81.1 10.0 72 104-176 405-477 (935)
188 KOG1803 DNA helicase [Replicat 97.3 0.00066 1.4E-08 81.3 9.2 66 106-173 182-249 (649)
189 PF13604 AAA_30: AAA domain; P 97.2 0.002 4.4E-08 69.3 11.2 62 109-172 1-65 (196)
190 TIGR00376 DNA helicase, putati 97.2 0.0021 4.6E-08 80.9 12.5 65 109-175 157-223 (637)
191 KOG1132 Helicase of the DEAD s 97.0 0.0031 6.8E-08 78.4 11.3 45 101-145 13-62 (945)
192 COG3421 Uncharacterized protei 97.0 0.0024 5.2E-08 76.2 9.4 139 128-268 2-166 (812)
193 PF13401 AAA_22: AAA domain; P 96.9 0.0017 3.6E-08 64.4 6.6 117 124-267 5-125 (131)
194 PRK10536 hypothetical protein; 96.9 0.017 3.6E-07 64.2 14.6 55 110-164 60-115 (262)
195 PF13245 AAA_19: Part of AAA d 96.8 0.0038 8.3E-08 56.5 7.2 49 125-173 12-62 (76)
196 TIGR01447 recD exodeoxyribonuc 96.7 0.015 3.2E-07 72.7 13.5 64 112-175 148-215 (586)
197 PRK10875 recD exonuclease V su 96.5 0.017 3.8E-07 72.2 12.7 65 111-175 154-221 (615)
198 TIGR01448 recD_rel helicase, p 96.5 0.025 5.4E-07 72.5 14.0 60 107-167 321-382 (720)
199 PRK12723 flagellar biosynthesi 96.4 0.039 8.4E-07 65.4 13.9 127 125-280 176-308 (388)
200 KOG0701 dsRNA-specific nucleas 96.4 0.0018 3.9E-08 86.2 3.1 106 462-568 292-400 (1606)
201 PF13871 Helicase_C_4: Helicas 96.4 0.012 2.5E-07 66.2 8.8 79 513-591 52-143 (278)
202 PTZ00112 origin recognition co 96.4 0.04 8.6E-07 69.7 14.0 43 105-147 754-805 (1164)
203 PRK14722 flhF flagellar biosyn 96.3 0.057 1.2E-06 63.5 14.2 156 88-270 87-260 (374)
204 PRK12727 flagellar biosynthesi 96.1 0.11 2.3E-06 63.4 15.7 118 124-268 351-470 (559)
205 KOG1131 RNA polymerase II tran 96.1 0.031 6.7E-07 66.0 10.6 66 111-176 18-90 (755)
206 PRK04296 thymidine kinase; Pro 96.0 0.022 4.7E-07 61.0 8.3 35 126-162 5-39 (190)
207 PRK06526 transposase; Provisio 95.9 0.031 6.7E-07 62.7 9.5 37 124-162 99-135 (254)
208 PF00580 UvrD-helicase: UvrD/R 95.9 0.014 2.9E-07 66.7 6.9 120 111-236 2-125 (315)
209 KOG0298 DEAD box-containing he 95.9 0.0094 2E-07 76.7 5.8 122 439-576 1200-1321(1394)
210 PRK05703 flhF flagellar biosyn 95.9 0.14 3E-06 61.7 15.4 118 125-269 223-344 (424)
211 PHA02533 17 large terminase pr 95.8 0.089 1.9E-06 65.0 13.7 126 106-240 56-183 (534)
212 cd00009 AAA The AAA+ (ATPases 95.7 0.12 2.5E-06 51.0 11.7 37 124-162 20-56 (151)
213 smart00382 AAA ATPases associa 95.6 0.023 4.9E-07 55.6 6.3 40 124-165 3-42 (148)
214 PRK00149 dnaA chromosomal repl 95.5 0.53 1.2E-05 57.3 18.7 49 124-173 149-197 (450)
215 COG1419 FlhF Flagellar GTP-bin 95.5 0.19 4E-06 59.2 13.8 129 124-281 204-335 (407)
216 COG1474 CDC6 Cdc6-related prot 95.5 0.12 2.5E-06 61.0 12.5 123 105-253 16-148 (366)
217 PRK11889 flhF flagellar biosyn 95.5 0.16 3.4E-06 59.9 13.0 118 125-269 243-364 (436)
218 smart00492 HELICc3 helicase su 95.4 0.064 1.4E-06 54.6 8.7 46 506-551 31-79 (141)
219 TIGR02768 TraA_Ti Ti-type conj 95.4 0.12 2.6E-06 66.5 13.0 101 108-240 351-453 (744)
220 PF00448 SRP54: SRP54-type pro 95.3 0.14 3E-06 55.2 11.3 120 126-269 4-127 (196)
221 PRK00411 cdc6 cell division co 95.3 0.21 4.6E-06 59.5 14.0 36 124-159 56-91 (394)
222 PRK14086 dnaA chromosomal repl 95.3 0.5 1.1E-05 58.9 17.4 48 125-173 316-363 (617)
223 TIGR02928 orc1/cdc6 family rep 95.1 0.18 3.9E-06 59.3 12.6 43 105-147 14-64 (365)
224 PLN03025 replication factor C 95.0 0.12 2.6E-06 59.9 10.6 24 124-147 35-58 (319)
225 KOG1805 DNA replication helica 95.0 0.077 1.7E-06 67.1 9.2 121 109-240 669-810 (1100)
226 COG1875 NYN ribonuclease and A 95.0 0.05 1.1E-06 62.4 7.0 57 110-166 229-289 (436)
227 smart00491 HELICc2 helicase su 95.0 0.076 1.7E-06 54.2 7.7 42 510-551 32-80 (142)
228 PRK08181 transposase; Validate 94.8 0.12 2.5E-06 58.5 9.5 43 124-169 107-149 (269)
229 PRK07003 DNA polymerase III su 94.8 0.13 2.9E-06 64.8 10.5 39 225-264 118-156 (830)
230 PRK12323 DNA polymerase III su 94.7 0.16 3.4E-06 63.3 10.8 122 125-267 40-164 (700)
231 PRK14974 cell division protein 94.7 0.5 1.1E-05 55.1 14.4 120 126-270 143-267 (336)
232 PRK08727 hypothetical protein; 94.7 0.24 5.2E-06 54.8 11.3 34 125-160 43-76 (233)
233 PF05876 Terminase_GpA: Phage 94.7 0.088 1.9E-06 65.5 8.6 162 108-278 15-191 (557)
234 PF03354 Terminase_1: Phage Te 94.6 0.09 1.9E-06 64.5 8.4 68 112-179 1-80 (477)
235 PRK14087 dnaA chromosomal repl 94.5 0.22 4.8E-06 60.5 11.4 50 124-174 142-191 (450)
236 PRK07952 DNA replication prote 94.5 0.3 6.4E-06 54.5 11.5 102 124-265 100-203 (244)
237 PRK13889 conjugal transfer rel 94.5 0.2 4.4E-06 65.7 11.7 55 107-163 344-400 (988)
238 TIGR01547 phage_term_2 phage t 94.4 0.19 4.2E-06 60.0 10.7 137 126-271 4-144 (396)
239 PRK08084 DNA replication initi 94.4 0.16 3.6E-06 56.2 9.3 36 124-161 46-81 (235)
240 PF00308 Bac_DnaA: Bacterial d 94.3 0.25 5.3E-06 54.2 10.3 106 125-270 36-143 (219)
241 PRK14949 DNA polymerase III su 94.2 0.34 7.3E-06 62.4 12.3 38 225-263 118-155 (944)
242 KOG0989 Replication factor C, 94.2 0.18 4E-06 56.8 8.7 45 223-269 126-171 (346)
243 PRK12377 putative replication 94.2 0.35 7.5E-06 54.0 11.1 46 124-172 102-147 (248)
244 PRK06893 DNA replication initi 94.1 0.14 3.1E-06 56.4 8.1 34 125-160 41-74 (229)
245 PF13177 DNA_pol3_delta2: DNA 94.1 0.2 4.3E-06 52.2 8.6 120 125-268 21-143 (162)
246 PRK06835 DNA replication prote 94.1 0.45 9.8E-06 55.4 12.3 58 109-169 160-226 (329)
247 cd01120 RecA-like_NTPases RecA 94.0 0.29 6.2E-06 49.7 9.6 39 126-166 2-40 (165)
248 PRK05707 DNA polymerase III su 94.0 0.22 4.7E-06 58.0 9.5 136 111-268 5-147 (328)
249 PRK05642 DNA replication initi 94.0 0.15 3.2E-06 56.5 7.8 36 124-161 46-81 (234)
250 PRK14088 dnaA chromosomal repl 93.9 0.32 7E-06 58.9 11.1 45 124-169 131-175 (440)
251 COG4626 Phage terminase-like p 93.9 0.61 1.3E-05 56.7 13.0 153 104-271 56-229 (546)
252 PRK13826 Dtr system oriT relax 93.8 0.69 1.5E-05 61.4 14.5 121 108-263 380-502 (1102)
253 TIGR00362 DnaA chromosomal rep 93.8 0.32 6.9E-06 58.4 10.8 43 125-168 138-180 (405)
254 PF05970 PIF1: PIF1-like helic 93.6 0.17 3.7E-06 59.8 7.9 107 109-240 1-116 (364)
255 PRK11773 uvrD DNA-dependent he 93.6 0.16 3.6E-06 65.4 8.3 107 109-237 9-119 (721)
256 PRK10919 ATP-dependent DNA hel 93.5 0.25 5.4E-06 63.2 9.7 107 110-237 3-113 (672)
257 PRK14958 DNA polymerase III su 93.5 0.3 6.5E-06 60.2 10.0 39 225-264 118-156 (509)
258 PRK14951 DNA polymerase III su 93.5 0.25 5.4E-06 61.9 9.4 23 126-148 41-63 (618)
259 TIGR01075 uvrD DNA helicase II 93.5 0.17 3.6E-06 65.3 8.2 106 109-237 4-114 (715)
260 PRK14723 flhF flagellar biosyn 93.5 0.57 1.2E-05 59.8 12.5 124 126-278 188-314 (767)
261 PRK07764 DNA polymerase III su 93.5 0.36 7.9E-06 62.6 11.0 115 125-264 39-157 (824)
262 PRK12402 replication factor C 93.4 0.33 7.1E-06 56.3 9.8 23 125-147 38-60 (337)
263 TIGR03015 pepcterm_ATPase puta 93.4 0.39 8.3E-06 53.9 10.0 20 125-144 45-64 (269)
264 PRK08691 DNA polymerase III su 93.4 0.52 1.1E-05 59.4 11.8 23 125-147 40-62 (709)
265 PRK12724 flagellar biosynthesi 93.3 0.86 1.9E-05 54.4 12.9 115 126-269 226-346 (432)
266 PRK14960 DNA polymerase III su 93.3 0.32 6.9E-06 60.8 9.6 115 125-264 39-155 (702)
267 PRK14964 DNA polymerase III su 93.1 0.38 8.3E-06 58.7 9.9 114 124-263 36-152 (491)
268 PRK14956 DNA polymerase III su 93.1 0.24 5.3E-06 60.0 8.1 22 126-147 43-64 (484)
269 PRK08116 hypothetical protein; 93.1 0.5 1.1E-05 53.5 10.2 45 125-172 116-160 (268)
270 PRK08769 DNA polymerase III su 92.9 0.55 1.2E-05 54.4 10.4 141 109-268 4-154 (319)
271 cd01124 KaiC KaiC is a circadi 92.8 0.46 9.9E-06 50.0 9.0 48 126-176 2-49 (187)
272 PRK09111 DNA polymerase III su 92.8 0.3 6.5E-06 61.2 8.5 120 124-264 47-169 (598)
273 TIGR02881 spore_V_K stage V sp 92.7 0.52 1.1E-05 53.0 9.7 24 124-147 43-66 (261)
274 PRK07994 DNA polymerase III su 92.7 0.58 1.3E-05 58.9 11.0 38 225-263 118-155 (647)
275 PRK06645 DNA polymerase III su 92.7 0.51 1.1E-05 58.0 10.2 25 124-148 44-68 (507)
276 KOG0991 Replication factor C, 92.6 0.21 4.6E-06 54.1 5.9 31 222-254 109-139 (333)
277 TIGR01074 rep ATP-dependent DN 92.6 0.45 9.8E-06 60.9 10.1 88 110-218 2-91 (664)
278 PRK06964 DNA polymerase III su 92.6 0.54 1.2E-05 55.0 9.8 44 224-268 130-173 (342)
279 PRK14963 DNA polymerase III su 92.5 0.48 1E-05 58.4 9.7 23 126-148 39-61 (504)
280 PRK11054 helD DNA helicase IV; 92.5 0.25 5.3E-06 63.0 7.4 86 108-217 195-282 (684)
281 PRK14969 DNA polymerase III su 92.5 0.83 1.8E-05 56.7 11.8 40 224-264 117-156 (527)
282 TIGR00580 mfd transcription-re 92.3 1.7 3.7E-05 57.3 14.8 101 434-546 476-579 (926)
283 COG2256 MGS1 ATPase related to 92.3 0.55 1.2E-05 54.9 9.1 95 124-270 49-143 (436)
284 PRK14961 DNA polymerase III su 92.3 0.73 1.6E-05 54.5 10.6 22 126-147 41-62 (363)
285 PF05621 TniB: Bacterial TniB 92.2 0.45 9.7E-06 54.2 8.1 94 124-241 62-160 (302)
286 COG1484 DnaC DNA replication p 92.1 0.45 9.7E-06 53.4 8.2 49 124-175 106-154 (254)
287 PRK10689 transcription-repair 91.9 2 4.3E-05 58.0 15.1 161 374-546 559-728 (1147)
288 TIGR03499 FlhF flagellar biosy 91.9 0.79 1.7E-05 52.2 9.9 36 125-160 196-231 (282)
289 PRK14721 flhF flagellar biosyn 91.9 1.5 3.2E-05 52.7 12.5 118 125-269 193-313 (420)
290 PRK14952 DNA polymerase III su 91.9 0.56 1.2E-05 58.6 9.3 40 224-264 116-155 (584)
291 PRK14959 DNA polymerase III su 91.9 0.62 1.3E-05 58.3 9.6 25 124-148 39-63 (624)
292 PRK14955 DNA polymerase III su 91.8 0.62 1.3E-05 55.8 9.4 24 125-148 40-63 (397)
293 PRK09112 DNA polymerase III su 91.7 0.66 1.4E-05 54.6 9.2 44 224-268 139-182 (351)
294 TIGR03420 DnaA_homol_Hda DnaA 91.6 0.64 1.4E-05 50.6 8.6 24 124-147 39-62 (226)
295 PF00004 AAA: ATPase family as 91.6 0.81 1.7E-05 44.9 8.5 32 126-162 1-32 (132)
296 PRK05563 DNA polymerase III su 91.6 1.4 3E-05 55.2 12.3 23 125-147 40-62 (559)
297 PRK00771 signal recognition pa 91.5 1.2 2.6E-05 53.8 11.3 118 125-268 97-218 (437)
298 PRK14948 DNA polymerase III su 91.4 1 2.2E-05 56.9 11.0 25 124-148 39-63 (620)
299 PRK14962 DNA polymerase III su 91.3 0.73 1.6E-05 56.3 9.4 23 125-147 38-60 (472)
300 PF02456 Adeno_IVa2: Adenoviru 91.3 0.22 4.8E-06 56.0 4.4 42 126-167 90-131 (369)
301 PRK14954 DNA polymerase III su 91.2 0.9 2E-05 57.2 10.1 24 125-148 40-63 (620)
302 PRK12422 chromosomal replicati 91.1 0.98 2.1E-05 54.8 10.2 43 124-169 142-184 (445)
303 PHA03368 DNA packaging termina 91.1 1.5 3.2E-05 54.8 11.5 133 124-268 255-391 (738)
304 PF13173 AAA_14: AAA domain 91.0 1.1 2.4E-05 44.5 8.8 38 226-267 61-98 (128)
305 PRK06871 DNA polymerase III su 90.9 1.1 2.5E-05 51.9 10.0 122 124-268 25-148 (325)
306 PRK00440 rfc replication facto 90.9 2.6 5.6E-05 48.4 13.0 23 125-147 40-62 (319)
307 PRK06995 flhF flagellar biosyn 90.8 2.3 5E-05 51.9 12.9 54 126-179 259-314 (484)
308 PRK06090 DNA polymerase III su 90.7 1.6 3.4E-05 50.7 10.8 135 110-269 4-150 (319)
309 PRK07940 DNA polymerase III su 90.6 1.6 3.4E-05 52.2 11.1 25 124-148 37-61 (394)
310 PHA03333 putative ATPase subun 90.6 2.6 5.7E-05 52.8 13.0 57 121-178 185-241 (752)
311 COG0470 HolB ATPase involved i 90.4 1.1 2.4E-05 51.5 9.4 119 126-266 27-147 (325)
312 PRK13342 recombination factor 90.4 1.7 3.6E-05 52.4 11.2 22 124-145 37-58 (413)
313 PRK14957 DNA polymerase III su 90.4 1.3 2.8E-05 55.0 10.3 40 224-264 117-156 (546)
314 PRK07471 DNA polymerase III su 90.3 0.99 2.2E-05 53.4 8.9 128 125-268 43-182 (365)
315 PF14617 CMS1: U3-containing 9 90.2 0.59 1.3E-05 52.1 6.6 84 153-237 126-212 (252)
316 PRK06921 hypothetical protein; 90.2 0.55 1.2E-05 53.1 6.5 43 124-168 118-160 (266)
317 PRK05896 DNA polymerase III su 90.1 0.99 2.1E-05 56.3 9.0 24 125-148 40-63 (605)
318 PHA02544 44 clamp loader, smal 90.1 1.6 3.4E-05 50.4 10.3 39 226-266 100-139 (316)
319 PRK06731 flhF flagellar biosyn 90.1 2.4 5.2E-05 48.0 11.4 117 124-268 76-197 (270)
320 KOG1133 Helicase of the DEAD s 90.0 0.32 7E-06 59.8 4.6 48 103-150 9-61 (821)
321 PRK07133 DNA polymerase III su 89.9 1.6 3.5E-05 55.6 10.8 23 125-147 42-64 (725)
322 PRK08451 DNA polymerase III su 89.8 1.8 3.9E-05 53.5 10.9 40 224-264 115-154 (535)
323 PF05496 RuvB_N: Holliday junc 89.8 0.49 1.1E-05 51.7 5.4 22 125-146 52-73 (233)
324 PRK14965 DNA polymerase III su 89.8 1.4 3E-05 55.4 10.1 116 125-264 40-156 (576)
325 PRK08903 DnaA regulatory inact 89.7 1.1 2.5E-05 49.0 8.4 36 124-161 43-78 (227)
326 PRK08939 primosomal protein Dn 89.7 1.3 2.9E-05 51.0 9.2 44 124-170 157-200 (306)
327 TIGR01073 pcrA ATP-dependent D 89.7 1.1 2.4E-05 57.9 9.5 107 109-237 4-114 (726)
328 PTZ00293 thymidine kinase; Pro 89.6 2.5 5.4E-05 46.0 10.6 109 126-267 7-115 (211)
329 COG3973 Superfamily I DNA and 89.4 1.1 2.4E-05 54.7 8.3 88 88-175 189-282 (747)
330 PF03237 Terminase_6: Terminas 89.2 1 2.2E-05 52.3 8.0 140 127-278 1-147 (384)
331 COG0593 DnaA ATPase involved i 88.9 1.6 3.5E-05 51.9 9.3 39 124-162 114-152 (408)
332 PRK10917 ATP-dependent DNA hel 88.9 1.8 3.9E-05 55.6 10.5 100 435-546 287-389 (681)
333 CHL00181 cbbX CbbX; Provisiona 88.7 2.1 4.6E-05 48.9 9.9 23 125-147 61-83 (287)
334 PRK05580 primosome assembly pr 88.7 2.7 5.8E-05 54.0 11.7 96 438-548 170-266 (679)
335 PRK14950 DNA polymerase III su 88.6 1.9 4.1E-05 54.3 10.2 22 126-147 41-62 (585)
336 PRK12726 flagellar biosynthesi 88.5 5.6 0.00012 47.1 13.1 125 125-278 208-336 (407)
337 COG1197 Mfd Transcription-repa 88.3 8.4 0.00018 51.0 15.7 163 372-546 551-722 (1139)
338 cd00984 DnaB_C DnaB helicase C 88.0 2.5 5.4E-05 46.6 9.6 37 125-162 15-51 (242)
339 TIGR00678 holB DNA polymerase 88.0 3.4 7.4E-05 43.8 10.3 25 124-148 15-39 (188)
340 COG2805 PilT Tfp pilus assembl 87.9 0.74 1.6E-05 52.0 5.2 75 126-208 128-204 (353)
341 PRK09183 transposase/IS protei 87.8 2.9 6.3E-05 47.1 10.1 42 124-168 103-144 (259)
342 PRK14712 conjugal transfer nic 87.7 2.4 5.2E-05 58.3 10.8 58 109-166 835-897 (1623)
343 TIGR02880 cbbX_cfxQ probable R 87.7 2.5 5.4E-05 48.3 9.5 23 125-147 60-82 (284)
344 TIGR00595 priA primosomal prot 87.7 3.1 6.7E-05 51.5 11.0 96 438-547 5-100 (505)
345 TIGR01425 SRP54_euk signal rec 87.3 7.8 0.00017 46.8 13.7 131 125-278 102-235 (429)
346 PF05127 Helicase_RecD: Helica 87.2 0.16 3.4E-06 53.7 -0.5 120 127-267 1-123 (177)
347 PRK14971 DNA polymerase III su 87.2 3.5 7.7E-05 52.1 11.3 23 125-147 41-63 (614)
348 PRK14953 DNA polymerase III su 87.1 2.5 5.4E-05 51.9 9.7 22 126-147 41-62 (486)
349 PRK13341 recombination factor 87.1 1.5 3.2E-05 56.4 7.9 22 124-145 53-74 (725)
350 PRK07993 DNA polymerase III su 87.0 2.1 4.5E-05 50.1 8.6 25 124-148 25-49 (334)
351 TIGR02785 addA_Gpos recombinat 86.8 1.6 3.5E-05 59.7 8.5 120 111-237 3-126 (1232)
352 PRK06647 DNA polymerase III su 86.6 3.9 8.4E-05 51.2 11.1 24 125-148 40-63 (563)
353 COG1435 Tdk Thymidine kinase [ 86.6 4.6 0.0001 43.2 9.9 101 126-253 7-107 (201)
354 PRK07399 DNA polymerase III su 86.6 5 0.00011 46.5 11.3 25 124-148 27-51 (314)
355 TIGR02397 dnaX_nterm DNA polym 86.4 3.1 6.8E-05 48.6 9.8 23 125-147 38-60 (355)
356 PRK10416 signal recognition pa 86.4 10 0.00022 44.2 13.6 121 125-269 116-246 (318)
357 PRK04195 replication factor C 86.3 4.3 9.4E-05 49.9 11.3 23 124-146 40-62 (482)
358 TIGR02760 TraI_TIGR conjugativ 86.3 2.1 4.6E-05 60.8 9.5 60 108-169 428-490 (1960)
359 PF01695 IstB_IS21: IstB-like 86.3 1.4 3E-05 46.7 6.1 43 124-169 48-90 (178)
360 cd01121 Sms Sms (bacterial rad 86.3 2.4 5.2E-05 50.3 8.7 88 125-239 84-171 (372)
361 PRK13894 conjugal transfer ATP 85.9 1.4 3.1E-05 51.1 6.4 65 94-165 124-190 (319)
362 TIGR00064 ftsY signal recognit 85.8 8.7 0.00019 43.6 12.5 120 125-268 74-203 (272)
363 PRK06904 replicative DNA helic 85.8 5.6 0.00012 48.8 11.7 111 126-240 224-348 (472)
364 PRK08699 DNA polymerase III su 85.7 5.6 0.00012 46.4 11.2 25 124-148 22-46 (325)
365 PF06733 DEAD_2: DEAD_2; Inte 85.6 0.48 1E-05 49.8 2.2 42 199-240 116-159 (174)
366 PRK06305 DNA polymerase III su 85.3 3 6.5E-05 50.8 9.1 24 125-148 41-64 (451)
367 cd01122 GP4d_helicase GP4d_hel 85.3 9.1 0.0002 43.0 12.5 113 124-240 31-154 (271)
368 PRK13833 conjugal transfer pro 85.2 1.7 3.6E-05 50.6 6.5 54 113-166 132-187 (323)
369 PRK13709 conjugal transfer nic 85.2 4.3 9.4E-05 56.6 11.4 60 108-167 966-1030(1747)
370 TIGR02639 ClpA ATP-dependent C 84.7 4.4 9.6E-05 52.5 10.7 25 124-148 204-228 (731)
371 PRK08506 replicative DNA helic 84.5 5.7 0.00012 48.7 11.0 110 126-240 195-316 (472)
372 PRK10263 DNA translocase FtsK; 84.4 2.5 5.5E-05 56.4 8.2 38 125-162 1012-1051(1355)
373 TIGR00643 recG ATP-dependent D 84.3 4.4 9.5E-05 51.6 10.3 100 435-546 261-363 (630)
374 PRK11331 5-methylcytosine-spec 84.2 3.9 8.5E-05 49.4 9.1 31 116-146 186-217 (459)
375 PRK11823 DNA repair protein Ra 84.2 3.1 6.7E-05 50.7 8.4 89 125-240 82-170 (446)
376 PRK08058 DNA polymerase III su 84.1 5.1 0.00011 46.8 9.9 23 126-148 31-53 (329)
377 PRK06067 flagellar accessory p 84.1 14 0.0003 40.7 12.9 48 125-175 27-74 (234)
378 PF01443 Viral_helicase1: Vira 84.0 1.1 2.4E-05 48.9 4.3 16 225-240 61-76 (234)
379 TIGR02012 tigrfam_recA protein 84.0 2.6 5.6E-05 48.9 7.3 42 125-168 57-98 (321)
380 PRK08533 flagellar accessory p 83.7 8.3 0.00018 42.6 10.9 49 124-175 25-73 (230)
381 TIGR02688 conserved hypothetic 83.5 5.1 0.00011 47.9 9.5 22 124-145 210-231 (449)
382 PRK11034 clpA ATP-dependent Cl 83.4 2.7 5.8E-05 54.3 7.8 24 124-147 208-231 (758)
383 PHA00012 I assembly protein 82.7 6.5 0.00014 45.4 9.6 26 126-151 4-29 (361)
384 PRK03992 proteasome-activating 82.7 4.3 9.3E-05 48.5 8.8 23 124-146 166-188 (389)
385 cd03115 SRP The signal recogni 82.7 11 0.00023 39.4 10.8 33 126-160 3-35 (173)
386 COG3972 Superfamily I DNA and 82.5 8.7 0.00019 46.2 10.7 51 127-177 180-230 (660)
387 COG1219 ClpX ATP-dependent pro 82.5 1 2.2E-05 51.1 3.1 24 124-147 98-121 (408)
388 TIGR02782 TrbB_P P-type conjug 82.4 2.7 5.9E-05 48.4 6.7 51 114-165 121-174 (299)
389 COG2255 RuvB Holliday junction 82.4 4.2 9.1E-05 45.9 7.7 24 124-147 53-76 (332)
390 CHL00095 clpC Clp protease ATP 82.2 7.7 0.00017 51.0 11.6 24 124-147 201-224 (821)
391 COG2812 DnaX DNA polymerase II 82.1 2.4 5.2E-05 52.0 6.3 116 124-264 39-156 (515)
392 PF05729 NACHT: NACHT domain 82.0 7.3 0.00016 39.6 9.2 43 126-168 3-48 (166)
393 PF00265 TK: Thymidine kinase; 81.9 5.4 0.00012 42.3 8.2 111 126-267 4-115 (176)
394 PF01935 DUF87: Domain of unkn 81.6 2.2 4.8E-05 46.8 5.4 43 119-162 19-61 (229)
395 PRK14873 primosome assembly pr 81.1 10 0.00022 48.5 11.6 97 440-549 170-266 (665)
396 cd00983 recA RecA is a bacter 81.0 3.2 7E-05 48.2 6.6 43 125-169 57-99 (325)
397 PRK09354 recA recombinase A; P 80.7 4.1 8.8E-05 47.8 7.3 42 125-168 62-103 (349)
398 KOG2028 ATPase related to the 80.5 5.3 0.00012 46.2 7.8 49 124-174 163-211 (554)
399 TIGR00959 ffh signal recogniti 80.2 25 0.00053 42.6 13.9 55 125-180 101-157 (428)
400 TIGR03345 VI_ClpV1 type VI sec 80.0 7.2 0.00016 51.3 10.1 22 126-147 599-620 (852)
401 PRK00080 ruvB Holliday junctio 79.6 3.9 8.4E-05 47.6 6.8 23 124-146 52-74 (328)
402 PF03796 DnaB_C: DnaB-like hel 78.9 6 0.00013 44.3 7.9 112 126-240 22-144 (259)
403 TIGR02760 TraI_TIGR conjugativ 78.6 7.2 0.00016 55.7 10.0 58 108-166 1018-1081(1960)
404 cd01393 recA_like RecA is a b 78.5 6.8 0.00015 42.7 8.0 40 125-164 21-64 (226)
405 COG1444 Predicted P-loop ATPas 78.5 7.4 0.00016 49.7 9.0 132 114-267 219-356 (758)
406 PTZ00454 26S protease regulato 78.2 8.3 0.00018 46.3 9.1 22 124-145 180-201 (398)
407 TIGR03600 phage_DnaB phage rep 78.2 8.8 0.00019 46.3 9.5 111 125-239 196-318 (421)
408 PRK14970 DNA polymerase III su 78.2 12 0.00025 44.4 10.3 23 124-146 40-62 (367)
409 TIGR00635 ruvB Holliday juncti 78.1 2.1 4.6E-05 49.1 4.0 21 124-144 31-51 (305)
410 TIGR03689 pup_AAA proteasome A 78.1 6.2 0.00014 48.7 8.1 23 124-146 217-239 (512)
411 KOG0739 AAA+-type ATPase [Post 77.9 9.6 0.00021 43.2 8.6 47 124-176 167-213 (439)
412 COG1198 PriA Primosomal protei 77.9 6.7 0.00015 50.2 8.5 97 436-546 223-319 (730)
413 TIGR01243 CDC48 AAA family ATP 77.7 6.1 0.00013 51.3 8.4 23 124-146 488-510 (733)
414 PRK09165 replicative DNA helic 77.6 13 0.00028 46.0 10.8 110 126-239 220-354 (497)
415 COG1200 RecG RecG-like helicas 77.5 15 0.00033 46.1 11.1 98 434-546 287-390 (677)
416 cd01125 repA Hexameric Replica 77.4 9.1 0.0002 42.4 8.6 36 126-161 4-49 (239)
417 COG1110 Reverse gyrase [DNA re 77.3 4.5 9.8E-05 52.4 6.7 68 461-532 124-191 (1187)
418 PRK04132 replication factor C 77.3 10 0.00022 49.5 10.1 39 226-267 630-669 (846)
419 TIGR03346 chaperone_ClpB ATP-d 76.9 12 0.00026 49.5 10.8 24 124-147 195-218 (852)
420 PF11942 Spt5_N: Spt5 transcri 76.8 1.1 2.4E-05 42.7 1.0 35 1087-1121 1-35 (97)
421 TIGR00767 rho transcription te 76.7 7 0.00015 46.6 7.7 20 124-143 169-188 (415)
422 TIGR01242 26Sp45 26S proteasom 76.5 9.6 0.00021 45.1 9.0 23 124-146 157-179 (364)
423 PRK10867 signal recognition pa 76.2 27 0.00059 42.4 12.7 35 125-160 102-136 (433)
424 PHA00350 putative assembly pro 76.0 11 0.00023 45.1 9.1 29 126-157 4-33 (399)
425 PRK09376 rho transcription ter 75.8 8.9 0.00019 45.6 8.2 20 123-142 169-188 (416)
426 PF12846 AAA_10: AAA-like doma 75.8 3.4 7.4E-05 46.6 4.8 37 124-162 2-38 (304)
427 PRK05917 DNA polymerase III su 75.7 21 0.00046 40.9 11.0 43 225-268 94-136 (290)
428 COG1221 PspF Transcriptional r 75.5 9.9 0.00021 45.3 8.5 86 124-240 102-187 (403)
429 cd01123 Rad51_DMC1_radA Rad51_ 75.1 7.7 0.00017 42.5 7.3 39 125-163 21-63 (235)
430 COG3267 ExeA Type II secretory 75.0 8.7 0.00019 42.8 7.3 41 125-168 53-93 (269)
431 KOG4156 Claspin, protein media 74.8 0.63 1.4E-05 55.9 -1.5 89 1044-1135 1010-1100(1329)
432 PF06745 KaiC: KaiC; InterPro 74.6 4.7 0.0001 44.1 5.3 51 124-176 20-70 (226)
433 PRK08006 replicative DNA helic 74.5 16 0.00035 44.8 10.4 110 126-239 227-349 (471)
434 PRK08760 replicative DNA helic 74.3 15 0.00034 45.1 10.2 109 126-239 232-352 (476)
435 TIGR01241 FtsH_fam ATP-depende 74.0 8.1 0.00018 47.7 7.8 23 124-146 89-111 (495)
436 PHA03372 DNA packaging termina 73.8 26 0.00055 43.8 11.5 125 125-267 204-337 (668)
437 PRK05748 replicative DNA helic 73.8 13 0.00028 45.4 9.3 110 126-239 206-327 (448)
438 PF08423 Rad51: Rad51; InterP 73.7 6.7 0.00015 44.1 6.4 107 117-238 26-145 (256)
439 CHL00176 ftsH cell division pr 73.6 12 0.00026 47.7 9.2 23 124-146 217-239 (638)
440 TIGR02655 circ_KaiC circadian 73.2 14 0.0003 45.6 9.5 58 116-176 250-313 (484)
441 COG0552 FtsY Signal recognitio 73.0 27 0.00057 40.6 10.8 122 126-271 142-273 (340)
442 cd00544 CobU Adenosylcobinamid 72.6 18 0.0004 38.0 8.9 45 126-175 2-46 (169)
443 COG0513 SrmB Superfamily II DN 72.6 15 0.00032 45.7 9.6 70 465-546 102-180 (513)
444 TIGR00665 DnaB replicative DNA 72.5 16 0.00035 44.2 9.8 109 126-239 198-318 (434)
445 PRK10865 protein disaggregatio 72.5 13 0.00028 49.2 9.4 24 124-147 200-223 (857)
446 PRK07004 replicative DNA helic 72.4 19 0.00041 44.1 10.3 111 126-240 216-338 (460)
447 TIGR02639 ClpA ATP-dependent C 72.1 14 0.0003 48.0 9.5 22 126-147 487-508 (731)
448 TIGR03877 thermo_KaiC_1 KaiC d 71.3 8.1 0.00018 42.8 6.3 49 124-175 22-70 (237)
449 PRK05973 replicative DNA helic 71.2 7.8 0.00017 43.1 6.0 49 125-176 66-114 (237)
450 KOG0344 ATP-dependent RNA heli 71.1 13 0.00028 45.6 8.2 100 130-238 364-468 (593)
451 KOG1133 Helicase of the DEAD s 70.8 30 0.00066 43.4 11.2 85 462-552 629-721 (821)
452 PRK05986 cob(I)alamin adenolsy 70.7 40 0.00086 36.3 10.9 132 124-267 23-157 (191)
453 COG0464 SpoVK ATPases of the A 70.3 12 0.00026 46.2 8.1 46 124-175 277-322 (494)
454 TIGR03345 VI_ClpV1 type VI sec 70.3 15 0.00034 48.3 9.4 24 124-147 209-232 (852)
455 PF01637 Arch_ATPase: Archaeal 70.0 11 0.00023 40.6 6.8 17 124-140 21-37 (234)
456 cd01128 rho_factor Transcripti 69.6 18 0.0004 40.5 8.6 19 122-140 15-33 (249)
457 PRK05636 replicative DNA helic 69.3 31 0.00067 42.8 11.2 109 126-239 268-388 (505)
458 TIGR02238 recomb_DMC1 meiotic 69.2 12 0.00026 43.4 7.3 40 126-165 99-142 (313)
459 COG0467 RAD55 RecA-superfamily 69.1 9.7 0.00021 42.7 6.4 49 124-175 24-72 (260)
460 TIGR00416 sms DNA repair prote 69.1 13 0.00028 45.4 7.9 88 125-239 96-183 (454)
461 PRK05564 DNA polymerase III su 69.0 32 0.00069 39.8 10.8 23 125-147 28-50 (313)
462 CHL00095 clpC Clp protease ATP 68.9 14 0.0003 48.7 8.6 22 126-147 542-563 (821)
463 PRK11034 clpA ATP-dependent Cl 68.8 11 0.00024 48.9 7.5 22 125-146 490-511 (758)
464 cd01131 PilT Pilus retraction 68.8 5.7 0.00012 42.8 4.2 39 126-165 4-42 (198)
465 KOG0740 AAA+-type ATPase [Post 68.7 10 0.00023 45.4 6.7 41 124-170 187-227 (428)
466 PF09444 MRC1: MRC1-like domai 68.5 1.5 3.4E-05 44.5 -0.2 38 1083-1121 5-47 (145)
467 TIGR02525 plasmid_TraJ plasmid 68.5 8.3 0.00018 45.8 5.9 41 124-164 150-190 (372)
468 PRK06321 replicative DNA helic 68.4 24 0.00051 43.4 9.9 109 126-239 229-349 (472)
469 KOG1807 Helicases [Replication 68.3 8.1 0.00017 48.6 5.7 68 108-175 377-449 (1025)
470 TIGR01243 CDC48 AAA family ATP 68.2 15 0.00032 47.9 8.6 22 124-145 213-234 (733)
471 PRK08840 replicative DNA helic 68.2 26 0.00056 43.0 10.1 110 126-239 220-342 (464)
472 TIGR03880 KaiC_arch_3 KaiC dom 67.5 11 0.00024 41.1 6.3 49 124-175 17-65 (224)
473 PF13481 AAA_25: AAA domain; P 67.3 12 0.00026 39.5 6.4 53 125-178 34-94 (193)
474 KOG1806 DEAD box containing he 67.3 7.7 0.00017 50.2 5.4 68 108-175 737-805 (1320)
475 KOG2228 Origin recognition com 67.2 32 0.0007 39.9 9.7 55 212-267 123-181 (408)
476 PHA03311 helicase-primase subu 67.1 28 0.0006 44.3 10.0 60 124-190 72-142 (828)
477 PF06309 Torsin: Torsin; Inte 66.5 13 0.00029 37.1 5.9 50 128-177 58-113 (127)
478 cd01129 PulE-GspE PulE/GspE Th 66.3 9.9 0.00022 42.9 5.7 47 114-162 68-117 (264)
479 PF02534 T4SS-DNA_transf: Type 66.2 4.8 0.0001 49.2 3.5 49 124-176 45-93 (469)
480 KOG0331 ATP-dependent RNA heli 65.2 22 0.00048 43.7 8.6 95 459-565 162-272 (519)
481 KOG0729 26S proteasome regulat 65.2 49 0.0011 37.0 10.3 20 124-143 212-231 (435)
482 PF13479 AAA_24: AAA domain 65.1 8.5 0.00018 41.9 4.7 78 125-240 5-82 (213)
483 PRK04328 hypothetical protein; 64.8 12 0.00026 41.8 6.0 49 124-175 24-72 (249)
484 TIGR02640 gas_vesic_GvpN gas v 64.8 12 0.00026 42.2 6.0 22 124-145 22-43 (262)
485 TIGR03878 thermo_KaiC_2 KaiC d 64.7 8.4 0.00018 43.3 4.8 35 125-161 38-72 (259)
486 COG0541 Ffh Signal recognition 64.6 63 0.0014 38.9 11.8 123 126-271 103-228 (451)
487 cd01126 TraG_VirD4 The TraG/Tr 64.2 3.6 7.7E-05 49.0 1.7 47 125-175 1-47 (384)
488 TIGR02868 CydC thiol reductant 64.0 12 0.00026 46.5 6.4 50 124-178 362-411 (529)
489 KOG2227 Pre-initiation complex 63.9 29 0.00064 41.8 9.0 58 105-162 149-214 (529)
490 PRK13851 type IV secretion sys 63.6 9.7 0.00021 44.7 5.1 40 124-166 163-202 (344)
491 PRK04301 radA DNA repair and r 63.6 29 0.00064 40.2 9.1 39 125-163 104-146 (317)
492 KOG0738 AAA+-type ATPase [Post 63.6 11 0.00023 44.4 5.2 47 124-176 246-292 (491)
493 PF01745 IPT: Isopentenyl tran 63.5 9 0.00019 41.7 4.3 32 126-163 4-35 (233)
494 PRK10865 protein disaggregatio 63.4 23 0.00049 46.9 9.0 23 125-147 600-622 (857)
495 TIGR03881 KaiC_arch_4 KaiC dom 63.2 16 0.00034 40.0 6.5 49 124-175 21-69 (229)
496 cd00561 CobA_CobO_BtuR ATP:cor 63.2 70 0.0015 33.4 10.8 32 126-159 5-36 (159)
497 PLN03187 meiotic recombination 63.2 28 0.0006 41.0 8.7 39 126-164 129-171 (344)
498 COG2874 FlaH Predicted ATPases 63.1 73 0.0016 34.9 11.0 135 126-279 31-179 (235)
499 TIGR01054 rgy reverse gyrase. 63.1 21 0.00046 48.7 8.7 100 438-546 101-205 (1171)
500 KOG2170 ATPase of the AAA+ sup 63.1 40 0.00087 38.6 9.4 42 227-270 179-228 (344)
No 1
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.7e-60 Score=534.29 Aligned_cols=470 Identities=40% Similarity=0.661 Sum_probs=410.2
Q ss_pred HCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhC
Q 037446 99 AKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVG 178 (1165)
Q Consensus 99 ~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g 178 (1165)
...|.+|..+++|.||..+...++.+|+|++.|||+|||+++++.|..++.+.++ ++||++||+.|+.|+++.|++.+|
T Consensus 5 ~~~~i~p~~ie~R~YQ~~i~a~al~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 5 AHPLIKPNTIEPRLYQLNIAAKALFKNTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred hccccccccccHHHHHHHHHHHHhhcCeEEEecCCccHHHHHHHHHHHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhC
Confidence 4568899999999999999999999999999999999999999999999999877 999999999999999999999999
Q ss_pred CCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCC
Q 037446 179 IPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL 258 (1165)
Q Consensus 179 ~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~ 258 (1165)
.+...++.++|.....+|...|...+|+|+|||++.+++..+.+.+.++.+||||||||..+++.|..+++.+++..+++
T Consensus 84 ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred CChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred eEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhc
Q 037446 259 RILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIG 338 (1165)
Q Consensus 259 riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~ 338 (1165)
++|||||||+...+.++.++++|+|+.+..+++.++++..|+....++.+.+.+..+..++...+...+++.+..|...|
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCchhhhhhhh-hhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccc---
Q 037446 339 LLQNRDYQTLSPVDLLNSR-DKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSF--- 414 (1165)
Q Consensus 339 vl~~~~~~~l~p~~l~~~~-~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~--- 414 (1165)
+...... +....+..+. .+.... ... ......+-..++.+..+.++.+++..+|+.+++..+.+.......
T Consensus 244 ~~~~~~~--~~~kdl~~~~~~~~~~a--~~~-~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~s 318 (542)
T COG1111 244 VIESSSP--VSKKDLLELRQIRLIMA--KNE-DSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGS 318 (542)
T ss_pred ceeccCc--ccHhHHHHHHHHHHHhc--cCc-cHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccch
Confidence 8765443 3344444433 222222 111 333444555677888999999999999999999888765443221
Q ss_pred ---hhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccc
Q 037446 415 ---ARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKA 491 (1165)
Q Consensus 415 ---~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~ 491 (1165)
..++.. ..+......+.........++|+..+.+++.+.++ ...+.|+|||+++|++++.+...|...|....
T Consensus 319 k~a~~l~~d-~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~--k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~- 394 (542)
T COG1111 319 KAAKSLLAD-PYFKRALRLLIRADESGVEHPKLEKLREILKEQLE--KNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR- 394 (542)
T ss_pred HHHHHHhcC-hhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHh--cCCCceEEEEehhHhHHHHHHHHHHhcCCcce-
Confidence 222222 23333333333446677889999999999999985 34569999999999999999999999995444
Q ss_pred eeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCcc
Q 037446 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRI 571 (1165)
Q Consensus 492 ~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGki 571 (1165)
..|.|+.......||+|+++.++++.|+.|+++|||||+++++|||||++|.||+|++..|++.++||+||+||...|++
T Consensus 395 ~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r~Grv 474 (542)
T COG1111 395 VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKRKGRV 474 (542)
T ss_pred eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccCCCCeE
Confidence 59999988777789999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ceecChh
Q 037446 572 PHIFKPE 578 (1165)
Q Consensus 572 v~v~~~d 578 (1165)
++++..+
T Consensus 475 ~vLvt~g 481 (542)
T COG1111 475 VVLVTEG 481 (542)
T ss_pred EEEEecC
Confidence 8777654
No 2
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.4e-51 Score=491.93 Aligned_cols=467 Identities=39% Similarity=0.557 Sum_probs=388.3
Q ss_pred HHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHH
Q 037446 97 EAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNI 176 (1165)
Q Consensus 97 L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl 176 (1165)
-....|.+|+.+++|.||.+++..++++|+||++|||+|||++|+..|+++++|.+.+++||++|++.|+.|+...+..
T Consensus 50 s~~~~~~~p~~~~lR~YQ~eivq~ALgkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~- 128 (746)
T KOG0354|consen 50 SAAQRWIYPTNLELRNYQEELVQPALGKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSI- 128 (746)
T ss_pred hhhccccccCcccccHHHHHHhHHhhcCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhh-
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999999955554
Q ss_pred hCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCC-CCccEEEEcccccccCccchHHHHHHHHcCC
Q 037446 177 VGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM-KYLVCLVIDEAHRATGNYAYCTAIRELMSVP 255 (1165)
Q Consensus 177 ~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l-~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~ 255 (1165)
.+.+...++.+.|......+..+|...+|+|+|||.|.+.+..+...- ..|.++||||||+..+++.|..+++.++...
T Consensus 129 ~~~~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k 208 (746)
T KOG0354|consen 129 YLIPYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLK 208 (746)
T ss_pred ccCcccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhh
Confidence 566655566666667777788999999999999999999998766554 8899999999999999999999999998765
Q ss_pred CCC-eEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHH
Q 037446 256 VQL-RILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL 334 (1165)
Q Consensus 256 ~~~-riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl 334 (1165)
... |+|||||||+++...+++.+.+|.++ +..+.+... +..|...+....+.+++..........+..++.+++.++
T Consensus 209 ~~~~qILgLTASpG~~~~~v~~~I~~L~as-ldvr~~ssi-~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l 286 (746)
T KOG0354|consen 209 NQGNQILGLTASPGSKLEQVQNVIDNLCAS-LDVRTESSI-KSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQL 286 (746)
T ss_pred hccccEEEEecCCCccHHHHHHHHHhhhee-cccchhhhh-hhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHH
Confidence 555 99999999999999999999999999 888888777 889999999999999988888999999999999999999
Q ss_pred hhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCch--HHHHHHHHHHhhc
Q 037446 335 SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIR--PAYEMLEEKLKQG 412 (1165)
Q Consensus 335 ~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~--~~~~~L~~~~~~~ 412 (1165)
+..++....+............... ..++.+...... |..+...++...++..+|++ +++..+.+...+.
T Consensus 287 ~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~q~~~----f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~ 358 (746)
T KOG0354|consen 287 QEEGLIEISDKSTSYEQWVVQAEKA----AAPNGPENQRNC----FYALHLRKYNLALLISDGIRFVDALDYLEDFYEEV 358 (746)
T ss_pred HhcCccccccccccccchhhhhhhh----hccCCCccchhh----HHHHHHHHHHHHHHhhcchhhHHHHhhhhhhcccc
Confidence 9888765554443333222222222 223333333322 77888888888899999998 7777777776665
Q ss_pred cchh--cccc-hhhHHHHHHHHH--hhhc--cCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHH-h
Q 037446 413 SFAR--FMSK-NEDIRKVKLLMQ--QSIS--HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALA-T 484 (1165)
Q Consensus 413 ~~~~--ll~~-~~~~~~v~~~l~--~~~~--~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~-~ 484 (1165)
..+. .+.. ...+......+. ..+. ....++|+..|.++|.+++. ..+..++||||.+|+.|..|...|. .
T Consensus 359 ~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~--~~~dsR~IIFve~R~sa~~l~~~l~~~ 436 (746)
T KOG0354|consen 359 ALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFE--QNPDSRTIIFVETRESALALKKWLLQL 436 (746)
T ss_pred chhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhh--cCCCccEEEEEehHHHHHHHHHHHHhh
Confidence 5543 1111 112222222222 1122 23569999999999999986 6678999999999999999999998 4
Q ss_pred cCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcC
Q 037446 485 IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTG 564 (1165)
Q Consensus 485 ~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRag 564 (1165)
....+++..+.|++.+....||+++++.++++.|++|++++||||++++|||||+.|+.||.||...|+...+||+|| |
T Consensus 437 ~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-g 515 (746)
T KOG0354|consen 437 HELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-G 515 (746)
T ss_pred hhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-c
Confidence 444489999999998888889999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCCCCccceecCh
Q 037446 565 RKHDGRIPHIFKP 577 (1165)
Q Consensus 565 R~GqGkiv~v~~~ 577 (1165)
|+.+|++++++.+
T Consensus 516 Ra~ns~~vll~t~ 528 (746)
T KOG0354|consen 516 RARNSKCVLLTTG 528 (746)
T ss_pred cccCCeEEEEEcc
Confidence 9999999999984
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-48 Score=425.63 Aligned_cols=361 Identities=22% Similarity=0.251 Sum_probs=293.1
Q ss_pred CCCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCC-CeE
Q 037446 79 FNEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPD-GKI 156 (1165)
Q Consensus 79 ~~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~-~rv 156 (1165)
.....+|.+ ++.+.|++++...+|..||+|| +..++..+.++++|..+.||||||.+|++||++.|...+. .++
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ----~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~ 132 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQ----SEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFA 132 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhh----hhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceE
Confidence 344568889 9999999999999999999999 6666666667999999999999999999999998866544 479
Q ss_pred EEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHH-HHhhcCCccEEEEcHHHHHHHHH-cCccCCCCccEEEEcc
Q 037446 157 VFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQ-SGTCLMKYLVCLVIDE 234 (1165)
Q Consensus 157 LILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l~-~~~~~l~~~~lVVIDE 234 (1165)
||++|||+|+.|+.+.|..+....++.+..+.||.+... ...+.+.++|+|+||++|.+++. .+.+.+..++++|+||
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 999999999999999999987667788999999988754 45777889999999999999998 5778899999999999
Q ss_pred cccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccc
Q 037446 235 AHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMG 313 (1165)
Q Consensus 235 AHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~ 313 (1165)
||+++++ .|...+..|++ ++..+|++++|||.+.++..++... +.. +..+.+..
T Consensus 213 ADrlLd~-dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~ras---------------------l~~--p~~v~~s~- 267 (476)
T KOG0330|consen 213 ADRLLDM-DFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRAS---------------------LDN--PVKVAVSS- 267 (476)
T ss_pred HHhhhhh-hhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhc---------------------cCC--CeEEeccc-
Confidence 9999996 89998888886 6778999999999987765444210 001 01111100
Q ss_pred hhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 037446 314 QEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393 (1165)
Q Consensus 314 ~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll 393 (1165)
.|.+
T Consensus 268 ------------------------------ky~t---------------------------------------------- 271 (476)
T KOG0330|consen 268 ------------------------------KYQT---------------------------------------------- 271 (476)
T ss_pred ------------------------------hhcc----------------------------------------------
Confidence 0000
Q ss_pred hhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchH
Q 037446 394 SSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRG 473 (1165)
Q Consensus 394 ~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~ 473 (1165)
-..+.+.+-......|-.+|+.+|.+. .+..+||||++..
T Consensus 272 ----------------------------------v~~lkQ~ylfv~~k~K~~yLV~ll~e~------~g~s~iVF~~t~~ 311 (476)
T KOG0330|consen 272 ----------------------------------VDHLKQTYLFVPGKDKDTYLVYLLNEL------AGNSVIVFCNTCN 311 (476)
T ss_pred ----------------------------------hHHhhhheEeccccccchhHHHHHHhh------cCCcEEEEEeccc
Confidence 000111111122245667788888654 3689999999999
Q ss_pred HHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCH
Q 037446 474 SVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553 (1165)
Q Consensus 474 ~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~ 553 (1165)
.++.++-.|+..| +.+..+|| .|++..|..+++.|++|.+.||||||+++||+|||.|++|||||.|.+.
T Consensus 312 tt~~la~~L~~lg--~~a~~LhG--------qmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~s 381 (476)
T KOG0330|consen 312 TTRFLALLLRNLG--FQAIPLHG--------QMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHS 381 (476)
T ss_pred hHHHHHHHHHhcC--cceecccc--------hhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcH
Confidence 9999999999999 88888887 6999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCC-CCccceecChhHHHHHHHHHHHHhcCC
Q 037446 554 LRMIQRMGRTGRKH-DGRIPHIFKPEVQFVELSIEQYVSRGK 594 (1165)
Q Consensus 554 ~~yiQriGRagR~G-qGkiv~v~~~d~~~~~~~Ie~~l~~~~ 594 (1165)
.+|+||+||++|.| +|+.+.+++.-+......||..+.++-
T Consensus 382 kDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 382 KDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred HHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 99999999999999 688777776655555568888776543
No 4
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-47 Score=446.77 Aligned_cols=357 Identities=22% Similarity=0.286 Sum_probs=287.8
Q ss_pred CCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHh-------CCCCe
Q 037446 84 SFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW-------FPDGK 155 (1165)
Q Consensus 84 sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~-------~~~~r 155 (1165)
.|.+ +|++.+..++..++|..||+|| .+.+.-.+.+++++.++.|||||||+|++|++.++.. ...++
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQ----aq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~ 167 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQ----AQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPI 167 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhh----hcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCe
Confidence 6888 9999999999999999999999 3444455566999999999999999999999998864 23457
Q ss_pred EEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHH-HHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcc
Q 037446 156 IVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDE 234 (1165)
Q Consensus 156 vLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDE 234 (1165)
+|||+|||+||.|+.+++.++.......+..++|+.+... ...+.++.+|+|+||++|.+++..+.+.+.++.|+|+||
T Consensus 168 vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 168 VLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDE 247 (519)
T ss_pred EEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEecc
Confidence 9999999999999999999987766677888888887654 456677899999999999999999999999999999999
Q ss_pred cccccCccchHHHHHHHHc-C-CCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEecc
Q 037446 235 AHRATGNYAYCTAIRELMS-V-PVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM 312 (1165)
Q Consensus 235 AHrl~~~~~~~~~l~~L~~-~-~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~ 312 (1165)
||+|+++ +|...++.|+. + ++.+|+|++|||.+..+..+..- |+.++ +.+..
T Consensus 248 ADrMldm-GFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~---------------------fl~~~----~~i~i 301 (519)
T KOG0331|consen 248 ADRMLDM-GFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAED---------------------FLNNP----IQINV 301 (519)
T ss_pred HHhhhcc-ccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHH---------------------HhcCc----eEEEe
Confidence 9999996 89999999885 5 44457999999987654433221 22211 11110
Q ss_pred chhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 037446 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392 (1165)
Q Consensus 313 ~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~l 392 (1165)
.....
T Consensus 302 g~~~~--------------------------------------------------------------------------- 306 (519)
T KOG0331|consen 302 GNKKE--------------------------------------------------------------------------- 306 (519)
T ss_pred cchhh---------------------------------------------------------------------------
Confidence 00000
Q ss_pred HhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCch
Q 037446 393 LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFR 472 (1165)
Q Consensus 393 l~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr 472 (1165)
......+.+.+.......|...|.++|.++. .....|+||||+++
T Consensus 307 --------------------------------~~a~~~i~qive~~~~~~K~~~l~~lL~~~~---~~~~~KvIIFc~tk 351 (519)
T KOG0331|consen 307 --------------------------------LKANHNIRQIVEVCDETAKLRKLGKLLEDIS---SDSEGKVIIFCETK 351 (519)
T ss_pred --------------------------------hhhhcchhhhhhhcCHHHHHHHHHHHHHHHh---ccCCCcEEEEecch
Confidence 0000011111122234567788888887775 34678999999999
Q ss_pred HHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCC
Q 037446 473 GSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552 (1165)
Q Consensus 473 ~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S 552 (1165)
+.|+.|+..|+..+ +++..+|| +.+|.+|..+++.|++|++.||||||+++||||||+|++|||||+|.+
T Consensus 352 r~~~~l~~~l~~~~--~~a~~iHG--------d~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~ 421 (519)
T KOG0331|consen 352 RTCDELARNLRRKG--WPAVAIHG--------DKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNN 421 (519)
T ss_pred hhHHHHHHHHHhcC--cceeeecc--------cccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCC
Confidence 99999999999988 88888887 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHH
Q 037446 553 PLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 553 ~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
.+.|+||+||+||.|+ |...+++..+.......+.+.+
T Consensus 422 vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 422 VEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred HHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 9999999999999985 8888888887776666666665
No 5
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-46 Score=420.15 Aligned_cols=347 Identities=20% Similarity=0.311 Sum_probs=279.6
Q ss_pred CCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCC----eEE
Q 037446 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG----KIV 157 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~----rvL 157 (1165)
.+|.+ +|+.++++++..+||.+||+|| +..++-++++++++.++.||||||.+|++|++++|...|.+ |||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ----~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVL 256 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQ----VATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVL 256 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchh----hhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEE
Confidence 48999 9999999999999999999999 88888899999999999999999999999999998665543 899
Q ss_pred EEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHH-hhcCCccEEEEcHHHHHHHHHc-CccCCCCccEEEEccc
Q 037446 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRA-SFWKTKRVFFVTPQVLEKDIQS-GTCLMKYLVCLVIDEA 235 (1165)
Q Consensus 158 ILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~-~l~~~~dIlVaTpq~L~~~l~~-~~~~l~~~~lVVIDEA 235 (1165)
||||||+|+.|.....+++..+..+.+++..||.+-..+. .++..+||+|+||++|.+++.+ ..+.+.++.++|+|||
T Consensus 257 VL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 257 VLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA 336 (691)
T ss_pred EEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechH
Confidence 9999999999999999999988889999999999976654 5566799999999999999976 6778999999999999
Q ss_pred ccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccc-
Q 037446 236 HRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMG- 313 (1165)
Q Consensus 236 Hrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~- 313 (1165)
+||+.. +|+..+.+|.+ ++..+|.++||||+...++++..+- +.+| +. +.+..+
T Consensus 337 DRMLee-gFademnEii~lcpk~RQTmLFSATMteeVkdL~slS---------------------L~kP-vr-ifvd~~~ 392 (691)
T KOG0338|consen 337 DRMLEE-GFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLS---------------------LNKP-VR-IFVDPNK 392 (691)
T ss_pred HHHHHH-HHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhh---------------------cCCC-eE-EEeCCcc
Confidence 999985 99999999987 6778999999999987666555442 1111 11 111111
Q ss_pred hhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 037446 314 QEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393 (1165)
Q Consensus 314 ~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll 393 (1165)
.....+.+.+ +|+
T Consensus 393 ~~a~~LtQEF--------iRI----------------------------------------------------------- 405 (691)
T KOG0338|consen 393 DTAPKLTQEF--------IRI----------------------------------------------------------- 405 (691)
T ss_pred ccchhhhHHH--------hee-----------------------------------------------------------
Confidence 1111000000 000
Q ss_pred hhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchH
Q 037446 394 SSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRG 473 (1165)
Q Consensus 394 ~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~ 473 (1165)
.......|-.-|..++.+.+ ..++|||+.+++
T Consensus 406 ------------------------------------------R~~re~dRea~l~~l~~rtf------~~~~ivFv~tKk 437 (691)
T KOG0338|consen 406 ------------------------------------------RPKREGDREAMLASLITRTF------QDRTIVFVRTKK 437 (691)
T ss_pred ------------------------------------------ccccccccHHHHHHHHHHhc------ccceEEEEehHH
Confidence 00011122333445555554 479999999999
Q ss_pred HHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCH
Q 037446 474 SVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553 (1165)
Q Consensus 474 ~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~ 553 (1165)
.|..|.-.|--.| +++..+|| +++|.+|.+.+++|++++++||||||+++|||||++|.+||||++|.+.
T Consensus 438 ~AHRl~IllGLlg--l~agElHG--------sLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~ 507 (691)
T KOG0338|consen 438 QAHRLRILLGLLG--LKAGELHG--------SLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTI 507 (691)
T ss_pred HHHHHHHHHHHhh--chhhhhcc--------cccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhH
Confidence 9999999888777 66655555 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCC-CCccceecChhHHHH
Q 037446 554 LRMIQRMGRTGRKH-DGRIPHIFKPEVQFV 582 (1165)
Q Consensus 554 ~~yiQriGRagR~G-qGkiv~v~~~d~~~~ 582 (1165)
..|+||+||++|.| .|+.+.++..++..+
T Consensus 508 e~Y~HRVGRTARAGRaGrsVtlvgE~dRkl 537 (691)
T KOG0338|consen 508 EHYLHRVGRTARAGRAGRSVTLVGESDRKL 537 (691)
T ss_pred HHHHHHhhhhhhcccCcceEEEeccccHHH
Confidence 99999999999999 488777666544433
No 6
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.6e-44 Score=440.71 Aligned_cols=367 Identities=20% Similarity=0.241 Sum_probs=281.4
Q ss_pred CCCCCCCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhC--
Q 037446 75 GTEEFNEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF-- 151 (1165)
Q Consensus 75 ~~~~~~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~-- 151 (1165)
+...+.+..+|++ ++++.++++|...+|..||++| +..+...+.++++|++++||||||++|++|++..+...
T Consensus 122 g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ----~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~ 197 (545)
T PTZ00110 122 GENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQ----VQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL 197 (545)
T ss_pred CCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHH----HHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc
Confidence 4556667789999 9999999999999999998877 44444444559999999999999999999998776432
Q ss_pred ----CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChH-HHHhhcCCccEEEEcHHHHHHHHHcCccCCCC
Q 037446 152 ----PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPT-KRASFWKTKRVFFVTPQVLEKDIQSGTCLMKY 226 (1165)
Q Consensus 152 ----~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~-~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~ 226 (1165)
....+|||+||++|+.|+.+++.++.......+..++|+.... +...+..+++|+|+||++|.+++..+...+.+
T Consensus 198 ~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~ 277 (545)
T PTZ00110 198 LRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRR 277 (545)
T ss_pred ccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhh
Confidence 2457999999999999999999998766666777788877654 34556678999999999999999988888999
Q ss_pred ccEEEEcccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCce
Q 037446 227 LVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKI 305 (1165)
Q Consensus 227 ~~lVVIDEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~ 305 (1165)
+++|||||||++.+. +|...++.++. +....|++++|||++.... .+...+. ....
T Consensus 278 v~~lViDEAd~mld~-gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~---~l~~~l~------------------~~~~- 334 (545)
T PTZ00110 278 VTYLVLDEADRMLDM-GFEPQIRKIVSQIRPDRQTLMWSATWPKEVQ---SLARDLC------------------KEEP- 334 (545)
T ss_pred CcEEEeehHHhhhhc-chHHHHHHHHHhCCCCCeEEEEEeCCCHHHH---HHHHHHh------------------ccCC-
Confidence 999999999999985 78888777775 5567899999999865433 2222110 0000
Q ss_pred EEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHH
Q 037446 306 ELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALIT 385 (1165)
Q Consensus 306 ~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~ 385 (1165)
..+.+.... +.. ...+
T Consensus 335 v~i~vg~~~---------------------------------l~~--------------~~~i----------------- 350 (545)
T PTZ00110 335 VHVNVGSLD---------------------------------LTA--------------CHNI----------------- 350 (545)
T ss_pred EEEEECCCc---------------------------------ccc--------------CCCe-----------------
Confidence 000000000 000 0000
Q ss_pred HHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeE
Q 037446 386 LYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRV 465 (1165)
Q Consensus 386 l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kv 465 (1165)
.+.+.......|...|.++|..... .+.++
T Consensus 351 ----------------------------------------------~q~~~~~~~~~k~~~L~~ll~~~~~----~~~k~ 380 (545)
T PTZ00110 351 ----------------------------------------------KQEVFVVEEHEKRGKLKMLLQRIMR----DGDKI 380 (545)
T ss_pred ----------------------------------------------eEEEEEEechhHHHHHHHHHHHhcc----cCCeE
Confidence 0000001113455566666655432 47899
Q ss_pred EEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEE
Q 037446 466 IIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545 (1165)
Q Consensus 466 IVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI 545 (1165)
||||++++.|+.|+..|...+ +.+..+|| ++++++|..+++.|++|+.+|||||+++++|||+|+|++||
T Consensus 381 LIF~~t~~~a~~l~~~L~~~g--~~~~~ihg--------~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI 450 (545)
T PTZ00110 381 LIFVETKKGADFLTKELRLDG--WPALCIHG--------DKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVI 450 (545)
T ss_pred EEEecChHHHHHHHHHHHHcC--CcEEEEEC--------CCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEE
Confidence 999999999999999999888 77777776 79999999999999999999999999999999999999999
Q ss_pred EeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHHHHHHHHHHhc
Q 037446 546 CFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVELSIEQYVSR 592 (1165)
Q Consensus 546 ~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~~~~Ie~~l~~ 592 (1165)
+||+|.++..|+||+||+||.| .|.++.++.++...+...+.+.+..
T Consensus 451 ~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~ 498 (545)
T PTZ00110 451 NFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLRE 498 (545)
T ss_pred EeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHH
Confidence 9999999999999999999999 4888888888776666666666543
No 7
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-45 Score=440.00 Aligned_cols=358 Identities=24% Similarity=0.296 Sum_probs=287.9
Q ss_pred CCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHh--CCCCe-EEE
Q 037446 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW--FPDGK-IVF 158 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~--~~~~r-vLI 158 (1165)
..|++ +|++.+++++...||..||+|| +..++..+.++|+++.++||||||++|++|+++.+.. ..... +||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ----~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLi 104 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQ----LAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALI 104 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHH----HHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEE
Confidence 47889 9999999999999999999999 7778787778999999999999999999999999863 32223 999
Q ss_pred EecChhHHHHHHHHHHHHhCCC-CceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccc
Q 037446 159 AAPSRPLVMQQIEACHNIVGIP-QEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAH 236 (1165)
Q Consensus 159 LvPtr~La~Q~~~e~~kl~g~~-~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAH 236 (1165)
++|||+||.|+.+++.++.... ...+..++|+.+...+ ..+..+++|||+||++|++++..+.+.+..+.++|+||||
T Consensus 105 l~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD 184 (513)
T COG0513 105 LAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD 184 (513)
T ss_pred ECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh
Confidence 9999999999999999987765 6778899999886554 3444569999999999999999999999999999999999
Q ss_pred cccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchh
Q 037446 237 RATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQE 315 (1165)
Q Consensus 237 rl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~ 315 (1165)
+|++. +|...+..+.. ++...|++++|||.+.. +..+.. .|+.++. .+.+.....
T Consensus 185 rmLd~-Gf~~~i~~I~~~~p~~~qtllfSAT~~~~---i~~l~~------------------~~l~~p~--~i~v~~~~~ 240 (513)
T COG0513 185 RMLDM-GFIDDIEKILKALPPDRQTLLFSATMPDD---IRELAR------------------RYLNDPV--EIEVSVEKL 240 (513)
T ss_pred hhhcC-CCHHHHHHHHHhCCcccEEEEEecCCCHH---HHHHHH------------------HHccCCc--EEEEccccc
Confidence 99997 99888888876 55679999999998764 333322 2222221 111110000
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhh
Q 037446 316 AVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395 (1165)
Q Consensus 316 ~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~ 395 (1165)
.
T Consensus 241 ~------------------------------------------------------------------------------- 241 (513)
T COG0513 241 E------------------------------------------------------------------------------- 241 (513)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCC-hHHHHHHHHHHHhhcccCCCCCeEEEEeCchHH
Q 037446 396 HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQS-PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS 474 (1165)
Q Consensus 396 ~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s-~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ 474 (1165)
.....+.+.+...... .|+..|..+|... ...++||||+++..
T Consensus 242 ------------------------------~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~------~~~~~IVF~~tk~~ 285 (513)
T COG0513 242 ------------------------------RTLKKIKQFYLEVESEEEKLELLLKLLKDE------DEGRVIVFVRTKRL 285 (513)
T ss_pred ------------------------------ccccCceEEEEEeCCHHHHHHHHHHHHhcC------CCCeEEEEeCcHHH
Confidence 0000011111122222 3777788777543 34479999999999
Q ss_pred HHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHH
Q 037446 475 VRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554 (1165)
Q Consensus 475 ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~ 554 (1165)
++.|+..|...| +++..+|| +|++++|.++++.|++|+.+||||||+++||||||++++|||||.|.++.
T Consensus 286 ~~~l~~~l~~~g--~~~~~lhG--------~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e 355 (513)
T COG0513 286 VEELAESLRKRG--FKVAALHG--------DLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPE 355 (513)
T ss_pred HHHHHHHHHHCC--CeEEEecC--------CCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHH
Confidence 999999999999 88888887 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCC-CCccceecChh-HHHHHHHHHHHHhcC
Q 037446 555 RMIQRMGRTGRKH-DGRIPHIFKPE-VQFVELSIEQYVSRG 593 (1165)
Q Consensus 555 ~yiQriGRagR~G-qGkiv~v~~~d-~~~~~~~Ie~~l~~~ 593 (1165)
.|+||+||+||.| .|..+.++.+. +......|++.+...
T Consensus 356 ~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 356 DYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred HheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 9999999999999 58888888764 555666888876544
No 8
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4.8e-43 Score=447.32 Aligned_cols=466 Identities=36% Similarity=0.570 Sum_probs=358.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCC
Q 037446 100 KTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGI 179 (1165)
Q Consensus 100 ~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~ 179 (1165)
..+.+|..+++|+||.+++..++.+|+||++|||+|||++|++++...+ ..+++++|||+||++|+.||.+.++++++.
T Consensus 6 ~~~~~~~~~~~r~yQ~~~~~~~l~~n~lv~~ptG~GKT~~a~~~i~~~l-~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 6 HPLIKPNTIEARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIAERL-HKKGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred CCccCcCcCCccHHHHHHHHHHhcCCeEEEcCCCccHHHHHHHHHHHHH-HhCCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 3456788899999999999999999999999999999999999998877 456789999999999999999999998887
Q ss_pred CCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCe
Q 037446 180 PQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR 259 (1165)
Q Consensus 180 ~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~r 259 (1165)
+...+..++|+.....+..+|.+++|+|+||+.+.+.+..+.+.+.+|++|||||||++.+++.+..+++.+.......+
T Consensus 85 ~~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~ 164 (773)
T PRK13766 85 PEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPL 164 (773)
T ss_pred CCceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCE
Confidence 66678889999888888888999999999999999988888888899999999999999987788878777777666778
Q ss_pred EEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcc
Q 037446 260 ILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGL 339 (1165)
Q Consensus 260 iL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~v 339 (1165)
+++|||||......+..++.+|++..+.+.....+++..|+..+.+..+.+.+.+....+...+...+...+..+...+.
T Consensus 165 il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~ 244 (773)
T PRK13766 165 VLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGV 244 (773)
T ss_pred EEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999888888999999999999999999999999999999999999999888888877777777776666665554
Q ss_pred cccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhcc------
Q 037446 340 LQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGS------ 413 (1165)
Q Consensus 340 l~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~------ 413 (1165)
..... ..+....+......+...... ... .........+.+..+.+...++...+...+...+........
T Consensus 245 ~~~~~-~~~~~~~l~~~~~~~~~~l~~-~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~ 321 (773)
T PRK13766 245 IVSIS-PDVSKKELLGLQKKLQQEIAN-DDS-EGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSK 321 (773)
T ss_pred cccCC-CCcCHHHHHHHHHHHHHHhhc-Cch-HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcH
Confidence 32211 111222222222222211110 000 111111223333444445555555555544444433222110
Q ss_pred -chhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccce
Q 037446 414 -FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKAT 492 (1165)
Q Consensus 414 -~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~ 492 (1165)
...+... . .....+.........++|+..|.++|.+.+. ...+.++||||+++.+|+.|.+.|...| +.+.
T Consensus 322 ~~~~l~~~-~---~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~--~~~~~kvlIF~~~~~t~~~L~~~L~~~~--~~~~ 393 (773)
T PRK13766 322 ASKRLVED-P---RFRKAVRKAKELDIEHPKLEKLREIVKEQLG--KNPDSRIIVFTQYRDTAEKIVDLLEKEG--IKAV 393 (773)
T ss_pred HHHHHHhC-H---HHHHHHHHHHhcccCChHHHHHHHHHHHHHh--cCCCCeEEEEeCcHHHHHHHHHHHHhCC--CceE
Confidence 0000110 1 1111111222234567999999999988764 2367899999999999999999998888 8889
Q ss_pred eeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCccc
Q 037446 493 EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIP 572 (1165)
Q Consensus 493 ~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv 572 (1165)
.++|......+++|++.+|.+++++|++|+.++||||+++++|+|+|.+++||+||+||++..|+||+||+||.|+|+++
T Consensus 394 ~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~~~v~ 473 (773)
T PRK13766 394 RFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEEGRVV 473 (773)
T ss_pred EEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCCCEEE
Confidence 99997655556789999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eecCh
Q 037446 573 HIFKP 577 (1165)
Q Consensus 573 ~v~~~ 577 (1165)
+++..
T Consensus 474 ~l~~~ 478 (773)
T PRK13766 474 VLIAK 478 (773)
T ss_pred EEEeC
Confidence 77754
No 9
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.7e-44 Score=425.58 Aligned_cols=357 Identities=21% Similarity=0.250 Sum_probs=273.1
Q ss_pred CCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhC--------
Q 037446 81 EGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF-------- 151 (1165)
Q Consensus 81 ~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~-------- 151 (1165)
...+|++ +|++.+++++...||..||++| +..+...+.++|+|+.+|||+|||++|++|+++.+...
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ----~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~ 81 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQ----ALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKV 81 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHH----HHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccccccc
Confidence 3468999 9999999999999999998877 44444445559999999999999999999999877532
Q ss_pred CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHHHHHHcCccCCCCccEE
Q 037446 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230 (1165)
Q Consensus 152 ~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lV 230 (1165)
...++|||+||++|+.|+.+.+..+.......+..++|+.....+ ..+..+++|+|+||++|.+++..+.+.+.++++|
T Consensus 82 ~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~l 161 (423)
T PRK04837 82 NQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVV 161 (423)
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEE
Confidence 235799999999999999999998877666778888888765443 3445578999999999999998888899999999
Q ss_pred EEcccccccCccchHHHHHHHHc-CC--CCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEE
Q 037446 231 VIDEAHRATGNYAYCTAIRELMS-VP--VQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIEL 307 (1165)
Q Consensus 231 VIDEAHrl~~~~~~~~~l~~L~~-~~--~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~ 307 (1165)
||||||++.+. +|...+..+.. ++ ...+.+++|||++.....+ .. .++..+ ..
T Consensus 162 ViDEad~l~~~-~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~---~~------------------~~~~~p--~~ 217 (423)
T PRK04837 162 VLDEADRMFDL-GFIKDIRWLFRRMPPANQRLNMLFSATLSYRVREL---AF------------------EHMNNP--EY 217 (423)
T ss_pred EEecHHHHhhc-ccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHH---HH------------------HHCCCC--EE
Confidence 99999999985 77777777765 32 3456799999986543222 11 111111 01
Q ss_pred EEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHH
Q 037446 308 IEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY 387 (1165)
Q Consensus 308 i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~ 387 (1165)
+.+...... . ..+.
T Consensus 218 i~v~~~~~~---------------------------------~---------------~~i~------------------ 231 (423)
T PRK04837 218 VEVEPEQKT---------------------------------G---------------HRIK------------------ 231 (423)
T ss_pred EEEcCCCcC---------------------------------C---------------Ccee------------------
Confidence 111100000 0 0000
Q ss_pred HHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEE
Q 037446 388 HIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467 (1165)
Q Consensus 388 ~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIV 467 (1165)
+.+.......|+..|..++... ...++||
T Consensus 232 ---------------------------------------------~~~~~~~~~~k~~~l~~ll~~~------~~~~~lV 260 (423)
T PRK04837 232 ---------------------------------------------EELFYPSNEEKMRLLQTLIEEE------WPDRAII 260 (423)
T ss_pred ---------------------------------------------EEEEeCCHHHHHHHHHHHHHhc------CCCeEEE
Confidence 0000001123555566555432 3579999
Q ss_pred EeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEe
Q 037446 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547 (1165)
Q Consensus 468 F~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~ 547 (1165)
||+++..|+.++..|...| +++..+|| +|++++|..+++.|++|+++|||||+++++|||+|++++||+|
T Consensus 261 F~~t~~~~~~l~~~L~~~g--~~v~~lhg--------~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~ 330 (423)
T PRK04837 261 FANTKHRCEEIWGHLAADG--HRVGLLTG--------DVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNY 330 (423)
T ss_pred EECCHHHHHHHHHHHHhCC--CcEEEecC--------CCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEe
Confidence 9999999999999999888 77777776 7899999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHhc
Q 037446 548 DANVSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVSR 592 (1165)
Q Consensus 548 D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~~ 592 (1165)
|+|.++..|+||+||+||.|+ |..+.++.+++......|++++..
T Consensus 331 d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~ 376 (423)
T PRK04837 331 DLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGH 376 (423)
T ss_pred CCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCC
Confidence 999999999999999999994 888888888776666677776643
No 10
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=8.6e-44 Score=432.87 Aligned_cols=376 Identities=19% Similarity=0.183 Sum_probs=280.2
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHH
Q 037446 63 DKFFGNLGPKPQGTEEFNEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAA 141 (1165)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~ 141 (1165)
+.+.........+...+.+..+|++ +|++.+++.+...||..||++| ++.+...+.++|+|++++||+|||++|+
T Consensus 101 ~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ----~~aip~il~g~dviv~ApTGSGKTlayl 176 (518)
T PLN00206 101 ELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQ----MQAIPAALSGRSLLVSADTGSGKTASFL 176 (518)
T ss_pred HHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHH----HHHHHHHhcCCCEEEEecCCCCccHHHH
Confidence 3444444444456677778889999 9999999999999999888777 4444444445899999999999999999
Q ss_pred HHHHHHHHh--------CCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChH-HHHhhcCCccEEEEcHHH
Q 037446 142 VVIYNFFRW--------FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPT-KRASFWKTKRVFFVTPQV 212 (1165)
Q Consensus 142 lpil~~L~~--------~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~-~~~~l~~~~dIlVaTpq~ 212 (1165)
+|++..+.. ..+.++|||+||++|+.|+.+.++.+.......+..+.|+.... +...+..+++|+|+||++
T Consensus 177 lPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgr 256 (518)
T PLN00206 177 VPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGR 256 (518)
T ss_pred HHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHH
Confidence 999877642 13458999999999999999999887655455666666665543 345666789999999999
Q ss_pred HHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCc
Q 037446 213 LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNES 292 (1165)
Q Consensus 213 L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~ 292 (1165)
|.+++....+.+.++++|||||||++.+. +|...+..++......|++++|||.++..+.+...+ .
T Consensus 257 L~~~l~~~~~~l~~v~~lViDEad~ml~~-gf~~~i~~i~~~l~~~q~l~~SATl~~~v~~l~~~~---~---------- 322 (518)
T PLN00206 257 LIDLLSKHDIELDNVSVLVLDEVDCMLER-GFRDQVMQIFQALSQPQVLLFSATVSPEVEKFASSL---A---------- 322 (518)
T ss_pred HHHHHHcCCccchheeEEEeecHHHHhhc-chHHHHHHHHHhCCCCcEEEEEeeCCHHHHHHHHHh---C----------
Confidence 99999888888999999999999999985 788877777765567799999999976543222211 1
Q ss_pred hhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCccc
Q 037446 293 DQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK 372 (1165)
Q Consensus 293 ~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~ 372 (1165)
.. ...+.+...... . ..+
T Consensus 323 --------~~--~~~i~~~~~~~~----------------------------~--------------------~~v---- 340 (518)
T PLN00206 323 --------KD--IILISIGNPNRP----------------------------N--------------------KAV---- 340 (518)
T ss_pred --------CC--CEEEEeCCCCCC----------------------------C--------------------cce----
Confidence 00 000111000000 0 000
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHH
Q 037446 373 FGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLV 452 (1165)
Q Consensus 373 ~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~ 452 (1165)
.+.........|...|.++|.
T Consensus 341 -----------------------------------------------------------~q~~~~~~~~~k~~~l~~~l~ 361 (518)
T PLN00206 341 -----------------------------------------------------------KQLAIWVETKQKKQKLFDILK 361 (518)
T ss_pred -----------------------------------------------------------eEEEEeccchhHHHHHHHHHH
Confidence 000000011223445555554
Q ss_pred HhhcccCCCCCeEEEEeCchHHHHHHHHHHHh-cCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEccc
Q 037446 453 DHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT-IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSI 531 (1165)
Q Consensus 453 ~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~-~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda 531 (1165)
.... ...++||||+++..++.|+..|.. .+ +++..+|| ++++.+|..+++.|++|+.+|||||++
T Consensus 362 ~~~~----~~~~~iVFv~s~~~a~~l~~~L~~~~g--~~~~~~Hg--------~~~~~eR~~il~~Fr~G~~~ILVaTdv 427 (518)
T PLN00206 362 SKQH----FKPPAVVFVSSRLGADLLANAITVVTG--LKALSIHG--------EKSMKERREVMKSFLVGEVPVIVATGV 427 (518)
T ss_pred hhcc----cCCCEEEEcCCchhHHHHHHHHhhccC--cceEEeeC--------CCCHHHHHHHHHHHHCCCCCEEEEecH
Confidence 4321 246899999999999999999975 35 66666665 899999999999999999999999999
Q ss_pred ccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHHHHHHHHHHh
Q 037446 532 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVELSIEQYVS 591 (1165)
Q Consensus 532 ~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~~~~Ie~~l~ 591 (1165)
+++|||+|++++||+||+|.++..|+||+|||||.| .|.+++++..+.......+.+.+.
T Consensus 428 l~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~ 488 (518)
T PLN00206 428 LGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLK 488 (518)
T ss_pred hhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 488888888776655556666554
No 11
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.8e-44 Score=406.15 Aligned_cols=354 Identities=23% Similarity=0.295 Sum_probs=287.5
Q ss_pred CCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCC-----CCeE
Q 037446 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP-----DGKI 156 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~-----~~rv 156 (1165)
..|++ .|++..+.++..+||.+.|++| |..+...+.+++++++|.||+|||++|++|+++.+...+ +-.+
T Consensus 82 ~~f~~~~LS~~t~kAi~~~GF~~MT~VQ----~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~v 157 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEMGFETMTPVQ----QKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGV 157 (543)
T ss_pred hHhhccccCHHHHHHHHhcCccchhHHH----HhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeE
Confidence 35777 9999999999999999999999 777777777799999999999999999999999985432 2369
Q ss_pred EEEecChhHHHHHHHHHHHHhCCC-CceEEEEeCCCCh-HHHHhhcCCccEEEEcHHHHHHHHHc-CccCCCCccEEEEc
Q 037446 157 VFAAPSRPLVMQQIEACHNIVGIP-QEWTIDMTGQISP-TKRASFWKTKRVFFVTPQVLEKDIQS-GTCLMKYLVCLVID 233 (1165)
Q Consensus 157 LILvPtr~La~Q~~~e~~kl~g~~-~~~v~~l~G~~~~-~~~~~l~~~~dIlVaTpq~L~~~l~~-~~~~l~~~~lVVID 233 (1165)
|||||||+|+.|.+.+.++++... ..++..+.||... .+.+.+.++++|+|+||++|.+++++ ..+...+++++|+|
T Consensus 158 lIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlD 237 (543)
T KOG0342|consen 158 LIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLD 237 (543)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEee
Confidence 999999999999999999998765 7788888888764 45566777999999999999999987 44566778999999
Q ss_pred ccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEecc
Q 037446 234 EAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM 312 (1165)
Q Consensus 234 EAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~ 312 (1165)
||||+++. +|...+..+.+ ++..+|.++||||.+..++++..+.-. +....+.+..
T Consensus 238 EADrlLd~-GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~----------------------~d~~~v~~~d 294 (543)
T KOG0342|consen 238 EADRLLDI-GFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALK----------------------RDPVFVNVDD 294 (543)
T ss_pred cchhhhhc-ccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhc----------------------CCceEeecCC
Confidence 99999995 99998888876 788899999999998877655554311 1111111111
Q ss_pred chhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 037446 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392 (1165)
Q Consensus 313 ~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~l 392 (1165)
+....
T Consensus 295 ~~~~~--------------------------------------------------------------------------- 299 (543)
T KOG0342|consen 295 GGERE--------------------------------------------------------------------------- 299 (543)
T ss_pred CCCcc---------------------------------------------------------------------------
Confidence 10000
Q ss_pred HhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCch
Q 037446 393 LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFR 472 (1165)
Q Consensus 393 l~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr 472 (1165)
....++|.+.......++..+..+|.++.. ..|+||||++.
T Consensus 300 ----------------------------------The~l~Qgyvv~~~~~~f~ll~~~LKk~~~-----~~KiiVF~sT~ 340 (543)
T KOG0342|consen 300 ----------------------------------THERLEQGYVVAPSDSRFSLLYTFLKKNIK-----RYKIIVFFSTC 340 (543)
T ss_pred ----------------------------------hhhcccceEEeccccchHHHHHHHHHHhcC-----CceEEEEechh
Confidence 000111111222334557778888877654 48999999999
Q ss_pred HHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCC
Q 037446 473 GSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552 (1165)
Q Consensus 473 ~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S 552 (1165)
..+.++++.|+... +++..+|| +++|..|..+..+|++.+.-||||||+++||+|+|+|++||+||+|.+
T Consensus 341 ~~vk~~~~lL~~~d--lpv~eiHg--------k~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d 410 (543)
T KOG0342|consen 341 MSVKFHAELLNYID--LPVLEIHG--------KQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSD 410 (543)
T ss_pred hHHHHHHHHHhhcC--Cchhhhhc--------CCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCC
Confidence 99999999999777 88877776 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHH
Q 037446 553 PLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIE 587 (1165)
Q Consensus 553 ~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie 587 (1165)
+..||||+||+||.|. |+.+++..|++..+...++
T Consensus 411 ~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 411 PEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred HHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 9999999999999994 9999999998887776776
No 12
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.2e-43 Score=423.83 Aligned_cols=353 Identities=22% Similarity=0.297 Sum_probs=268.5
Q ss_pred CCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCC-------C
Q 037446 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFP-------D 153 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~-------~ 153 (1165)
++|++ +|++.+++++...+|..||++| .+++..++. +|+|+.+|||+|||++|++|+++.+.... .
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ-----~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~ 75 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQGYREPTPIQ-----QQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRP 75 (456)
T ss_pred CCHHHcCCCHHHHHHHHHCCCCCCCHHH-----HHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCC
Confidence 37888 9999999999999999887666 455555554 89999999999999999999999875432 2
Q ss_pred CeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEE
Q 037446 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVI 232 (1165)
Q Consensus 154 ~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVI 232 (1165)
.++|||+||++|+.|+.+.+..+.......+..++|+.....+ ..+...++|+|+||++|.+++....+.+.++++|||
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lVi 155 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVL 155 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEe
Confidence 3799999999999999999999887777778888888876543 345567899999999999998888888999999999
Q ss_pred cccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEec
Q 037446 233 DEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVE 311 (1165)
Q Consensus 233 DEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~ 311 (1165)
||||++.+. +|...++.++. ++...++++||||+..... .+...+ +..+. .+.+.
T Consensus 156 DEah~ll~~-~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~---~l~~~~------------------~~~~~--~i~~~ 211 (456)
T PRK10590 156 DEADRMLDM-GFIHDIRRVLAKLPAKRQNLLFSATFSDDIK---ALAEKL------------------LHNPL--EIEVA 211 (456)
T ss_pred ecHHHHhcc-ccHHHHHHHHHhCCccCeEEEEeCCCcHHHH---HHHHHH------------------cCCCe--EEEEe
Confidence 999999985 66666666554 5667789999999875432 222111 11110 00000
Q ss_pred cchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 037446 312 MGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRR 391 (1165)
Q Consensus 312 ~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ 391 (1165)
..... . ..+.
T Consensus 212 ~~~~~---------------------------------~---------------~~i~---------------------- 221 (456)
T PRK10590 212 RRNTA---------------------------------S---------------EQVT---------------------- 221 (456)
T ss_pred ccccc---------------------------------c---------------ccee----------------------
Confidence 00000 0 0000
Q ss_pred HHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCc
Q 037446 392 LLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNF 471 (1165)
Q Consensus 392 ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~s 471 (1165)
+.+.......|...|..++. .....++||||++
T Consensus 222 -----------------------------------------~~~~~~~~~~k~~~l~~l~~------~~~~~~~lVF~~t 254 (456)
T PRK10590 222 -----------------------------------------QHVHFVDKKRKRELLSQMIG------KGNWQQVLVFTRT 254 (456)
T ss_pred -----------------------------------------EEEEEcCHHHHHHHHHHHHH------cCCCCcEEEEcCc
Confidence 00000000112222333332 1245799999999
Q ss_pred hHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCC
Q 037446 472 RGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551 (1165)
Q Consensus 472 r~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~ 551 (1165)
+..++.|++.|...+ +.+..+|| +|++.+|..+++.|++|+++|||||+++++|||+|++++||+||+|.
T Consensus 255 ~~~~~~l~~~L~~~g--~~~~~lhg--------~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~ 324 (456)
T PRK10590 255 KHGANHLAEQLNKDG--IRSAAIHG--------NKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPN 324 (456)
T ss_pred HHHHHHHHHHHHHCC--CCEEEEEC--------CCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCC
Confidence 999999999999888 78777776 79999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHh
Q 037446 552 SPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVS 591 (1165)
Q Consensus 552 S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~ 591 (1165)
++..|+||+||+||.|. |..+.++..++......|++.+.
T Consensus 325 ~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~ 365 (456)
T PRK10590 325 VPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLK 365 (456)
T ss_pred CHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhc
Confidence 99999999999999994 88777777777666667777764
No 13
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1e-43 Score=400.35 Aligned_cols=366 Identities=22% Similarity=0.287 Sum_probs=296.1
Q ss_pred CCCCCCCCCCCCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHH
Q 037446 70 GPKPQGTEEFNEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 70 ~~~~~~~~~~~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L 148 (1165)
.....+...+++..+|++ +++..+++.+...+|..||+|| -..+...+..+|.|..+.||||||++|++|++-.+
T Consensus 232 nis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIq----R~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~I 307 (673)
T KOG0333|consen 232 NISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQ----RQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWI 307 (673)
T ss_pred eeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHH----HhhccchhccCCeeeEEeccCCccccchhhHHHHH
Confidence 344578888999999999 9999999999999999999998 34444444459999999999999999999998776
Q ss_pred HhC----------CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHHHHH
Q 037446 149 RWF----------PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLEKDI 217 (1165)
Q Consensus 149 ~~~----------~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~~~l 217 (1165)
... .+++++|++|||+|++|+.++-.++.......++.+.|+....++ ..+..+++|+|+||++|.+.+
T Consensus 308 sslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~L 387 (673)
T KOG0333|consen 308 SSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSL 387 (673)
T ss_pred HcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHH
Confidence 433 346899999999999999999999877667889999999887665 356778999999999999999
Q ss_pred HcCccCCCCccEEEEcccccccCccchHHHHHHHHcC-C-----------------------CC--CeEEEEccCCCCCh
Q 037446 218 QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV-P-----------------------VQ--LRILALTATPGSKQ 271 (1165)
Q Consensus 218 ~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~-~-----------------------~~--~riL~LSATP~~~~ 271 (1165)
.+..+.+.++.+||+|||+++.++ +|...+..++.. + .. ++.++||||.+..+
T Consensus 388 enr~lvl~qctyvvldeadrmiDm-gfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~v 466 (673)
T KOG0333|consen 388 ENRYLVLNQCTYVVLDEADRMIDM-GFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAV 466 (673)
T ss_pred HHHHHHhccCceEeccchhhhhcc-cccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHH
Confidence 999999999999999999999985 887777777641 0 11 67889999987654
Q ss_pred HHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchh
Q 037446 272 QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPV 351 (1165)
Q Consensus 272 ~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~ 351 (1165)
+ .|. ..|+.++....+.....
T Consensus 467 e---rla------------------r~ylr~pv~vtig~~gk-------------------------------------- 487 (673)
T KOG0333|consen 467 E---RLA------------------RSYLRRPVVVTIGSAGK-------------------------------------- 487 (673)
T ss_pred H---HHH------------------HHHhhCCeEEEeccCCC--------------------------------------
Confidence 3 222 23444432222211100
Q ss_pred hhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHH
Q 037446 352 DLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLM 431 (1165)
Q Consensus 352 ~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l 431 (1165)
....+
T Consensus 488 ---------------------------------------------------------------------------~~~rv 492 (673)
T KOG0333|consen 488 ---------------------------------------------------------------------------PTPRV 492 (673)
T ss_pred ---------------------------------------------------------------------------Cccch
Confidence 00112
Q ss_pred HhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHH
Q 037446 432 QQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQ 511 (1165)
Q Consensus 432 ~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR 511 (1165)
+|.+.....+.|..+|.++|...+ ..++|||+|+++.|+.|++.|.+.| +++..||| |-++++|
T Consensus 493 eQ~v~m~~ed~k~kkL~eil~~~~------~ppiIIFvN~kk~~d~lAk~LeK~g--~~~~tlHg--------~k~qeQR 556 (673)
T KOG0333|consen 493 EQKVEMVSEDEKRKKLIEILESNF------DPPIIIFVNTKKGADALAKILEKAG--YKVTTLHG--------GKSQEQR 556 (673)
T ss_pred heEEEEecchHHHHHHHHHHHhCC------CCCEEEEEechhhHHHHHHHHhhcc--ceEEEeeC--------CccHHHH
Confidence 233334455678889999997653 5799999999999999999999999 99999988 6799999
Q ss_pred HHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHH
Q 037446 512 QAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 512 ~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
..+++.|++|...||||||++++|||||+|.+|||||++.++.+|+|||||+||.|+ |.++.++.++...+...+.+.+
T Consensus 557 e~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l 636 (673)
T KOG0333|consen 557 ENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQAL 636 (673)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 9999999887755544454444
No 14
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=8.8e-43 Score=419.73 Aligned_cols=352 Identities=21% Similarity=0.313 Sum_probs=274.0
Q ss_pred CCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCC-CCeEEEE
Q 037446 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFP-DGKIVFA 159 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~-~~rvLIL 159 (1165)
.+|++ +|++.+++++...||..||++| .+++..++. +|+|+++|||+|||++|++|+++.+.... ..++|||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ-----~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQ-----AQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHH-----HHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEE
Confidence 47999 9999999999999999888766 555555554 89999999999999999999999886443 3479999
Q ss_pred ecChhHHHHHHHHHHHHhCC-CCceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccccc
Q 037446 160 APSRPLVMQQIEACHNIVGI-PQEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHR 237 (1165)
Q Consensus 160 vPtr~La~Q~~~e~~kl~g~-~~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHr 237 (1165)
+||++|+.|+.++++.+... ....+..++|+.+...+ ..+..+++|+|+||++|.+++.++.+.+.++++|||||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 99999999999999987643 35678888998876543 45556789999999999999998888899999999999999
Q ss_pred ccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhH
Q 037446 238 ATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316 (1165)
Q Consensus 238 l~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~ 316 (1165)
+.+. +|...+..++. ++...++++||||++.... .+...+ +..+. .+.+......
T Consensus 159 ~l~~-g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~---~l~~~~------------------~~~~~--~i~~~~~~~~ 214 (460)
T PRK11776 159 MLDM-GFQDAIDAIIRQAPARRQTLLFSATYPEGIA---AISQRF------------------QRDPV--EVKVESTHDL 214 (460)
T ss_pred HhCc-CcHHHHHHHHHhCCcccEEEEEEecCcHHHH---HHHHHh------------------cCCCE--EEEECcCCCC
Confidence 9985 67676666664 5677899999999975432 222111 11110 0111000000
Q ss_pred HHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhC
Q 037446 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSH 396 (1165)
Q Consensus 317 ~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~ 396 (1165)
..
T Consensus 215 -------------------------------------------------~~----------------------------- 216 (460)
T PRK11776 215 -------------------------------------------------PA----------------------------- 216 (460)
T ss_pred -------------------------------------------------CC-----------------------------
Confidence 00
Q ss_pred CchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHH
Q 037446 397 GIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVR 476 (1165)
Q Consensus 397 g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae 476 (1165)
+.+.+.......|+..|..++... ...++||||+++..++
T Consensus 217 ----------------------------------i~~~~~~~~~~~k~~~l~~ll~~~------~~~~~lVF~~t~~~~~ 256 (460)
T PRK11776 217 ----------------------------------IEQRFYEVSPDERLPALQRLLLHH------QPESCVVFCNTKKECQ 256 (460)
T ss_pred ----------------------------------eeEEEEEeCcHHHHHHHHHHHHhc------CCCceEEEECCHHHHH
Confidence 000000111123566666666432 3568999999999999
Q ss_pred HHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHH
Q 037446 477 DIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556 (1165)
Q Consensus 477 ~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~y 556 (1165)
.+++.|...+ +.+..+|| +|++.+|..+++.|++|+.+|||||+++++|||+|++++||+||.|.++..|
T Consensus 257 ~l~~~L~~~~--~~v~~~hg--------~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~y 326 (460)
T PRK11776 257 EVADALNAQG--FSALALHG--------DLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVH 326 (460)
T ss_pred HHHHHHHhCC--CcEEEEeC--------CCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHh
Confidence 9999999988 77777776 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHh
Q 037446 557 IQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVS 591 (1165)
Q Consensus 557 iQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~ 591 (1165)
+||+||+||.|+ |..+.++.+++......|++++.
T Consensus 327 iqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~ 362 (460)
T PRK11776 327 VHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLG 362 (460)
T ss_pred hhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhC
Confidence 999999999994 88888888877666667776654
No 15
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.9e-42 Score=413.95 Aligned_cols=354 Identities=23% Similarity=0.337 Sum_probs=270.0
Q ss_pred CCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhh-cCCeEEEcCCCchHHHHHHHHHHHHHHhC-----CCCeE
Q 037446 84 SFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWF-----PDGKI 156 (1165)
Q Consensus 84 sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll-~rnvIl~a~TGsGKTL~a~lpil~~L~~~-----~~~rv 156 (1165)
+|++ +|++.+++.+...||..|+++| .+++..++ ++++|+.+|||+|||++|++|+++.+... ...++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ-----~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 76 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQ-----AEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRI 76 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHH-----HHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceE
Confidence 6888 9999999999999999887655 55555555 48999999999999999999999887532 23589
Q ss_pred EEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHh-hcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccc
Q 037446 157 VFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRAS-FWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEA 235 (1165)
Q Consensus 157 LILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~-l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEA 235 (1165)
|||+||++|+.|+.+.+..+.......+..++|+.....+.. +..+++|+|+||++|.+.+..+.+.+.++++||||||
T Consensus 77 lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEa 156 (434)
T PRK11192 77 LILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEA 156 (434)
T ss_pred EEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECH
Confidence 999999999999999999988777778889999988765543 3456899999999999999988888999999999999
Q ss_pred ccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccch
Q 037446 236 HRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQ 314 (1165)
Q Consensus 236 Hrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~ 314 (1165)
|++.+. +|...+..+.. .+...++++||||+... .+..+...+. ..+ . .+.+....
T Consensus 157 h~~l~~-~~~~~~~~i~~~~~~~~q~~~~SAT~~~~--~~~~~~~~~~------------------~~~-~-~i~~~~~~ 213 (434)
T PRK11192 157 DRMLDM-GFAQDIETIAAETRWRKQTLLFSATLEGD--AVQDFAERLL------------------NDP-V-EVEAEPSR 213 (434)
T ss_pred HHHhCC-CcHHHHHHHHHhCccccEEEEEEeecCHH--HHHHHHHHHc------------------cCC-E-EEEecCCc
Confidence 999985 77777777764 55667899999998632 1222222111 000 0 00000000
Q ss_pred hHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHh
Q 037446 315 EAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLS 394 (1165)
Q Consensus 315 ~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~ 394 (1165)
. .... +.
T Consensus 214 ~----------------------------~~~~--------------------i~------------------------- 220 (434)
T PRK11192 214 R----------------------------ERKK--------------------IH------------------------- 220 (434)
T ss_pred c----------------------------cccC--------------------ce-------------------------
Confidence 0 0000 00
Q ss_pred hCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHH
Q 037446 395 SHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS 474 (1165)
Q Consensus 395 ~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ 474 (1165)
.+.. .......|...|..++.. ....++||||+++..
T Consensus 221 ------------------~~~~-------------------~~~~~~~k~~~l~~l~~~------~~~~~~lVF~~s~~~ 257 (434)
T PRK11192 221 ------------------QWYY-------------------RADDLEHKTALLCHLLKQ------PEVTRSIVFVRTRER 257 (434)
T ss_pred ------------------EEEE-------------------EeCCHHHHHHHHHHHHhc------CCCCeEEEEeCChHH
Confidence 0000 000012344444444422 246799999999999
Q ss_pred HHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHH
Q 037446 475 VRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554 (1165)
Q Consensus 475 ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~ 554 (1165)
++.++..|...+ +.+..+|| +|++.+|..+++.|++|+++|||||+++++|||+|++++||+||+|.+..
T Consensus 258 ~~~l~~~L~~~~--~~~~~l~g--------~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~ 327 (434)
T PRK11192 258 VHELAGWLRKAG--INCCYLEG--------EMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSAD 327 (434)
T ss_pred HHHHHHHHHhCC--CCEEEecC--------CCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHH
Confidence 999999999887 77777776 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHh
Q 037446 555 RMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVS 591 (1165)
Q Consensus 555 ~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~ 591 (1165)
.|+||+||+||.|. |..+.++...+......+++++.
T Consensus 328 ~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 328 TYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred HHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHh
Confidence 99999999999994 87777777766666667777664
No 16
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.8e-42 Score=432.41 Aligned_cols=522 Identities=14% Similarity=0.150 Sum_probs=326.4
Q ss_pred CCCccCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 84 SFDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 84 sFee~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
.|...|++.+.++|...||..|++ +|.+++..++. +|+|+.+|||||||++|++|+++.+...+..++|||+||
T Consensus 16 ~~~~~l~~~l~~~L~~~g~~~p~~-----~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~Pt 90 (742)
T TIGR03817 16 PWPAWAHPDVVAALEAAGIHRPWQ-----HQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPT 90 (742)
T ss_pred CCCCcCCHHHHHHHHHcCCCcCCH-----HHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcCh
Confidence 444479999999999999987655 55666666665 899999999999999999999999877677799999999
Q ss_pred hhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHc----CccCCCCccEEEEcccccc
Q 037446 163 RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS----GTCLMKYLVCLVIDEAHRA 238 (1165)
Q Consensus 163 r~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~----~~~~l~~~~lVVIDEAHrl 238 (1165)
++|+.|+.+.++++. .....+..+.|+....++..+..+++|+|+||++|...+.. +...+.++++|||||||.+
T Consensus 91 raLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~ 169 (742)
T TIGR03817 91 KALAADQLRAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSY 169 (742)
T ss_pred HHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhc
Confidence 999999999999875 34567788899998887777778899999999999854321 2234788999999999999
Q ss_pred cCcc--chHHHHHHHHc----CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEecc
Q 037446 239 TGNY--AYCTAIRELMS----VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM 312 (1165)
Q Consensus 239 ~~~~--~~~~~l~~L~~----~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~ 312 (1165)
.+.. .....++++.. +..+.|++++|||..+..+....++.. + ...+....
T Consensus 170 ~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~----------------------~-~~~i~~~~ 226 (742)
T TIGR03817 170 RGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGA----------------------P-VVAVTEDG 226 (742)
T ss_pred cCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCC----------------------C-eEEECCCC
Confidence 7631 12334444432 456679999999998765433333211 0 00000000
Q ss_pred chhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 037446 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392 (1165)
Q Consensus 313 ~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~l 392 (1165)
.... ......+.|... . ..
T Consensus 227 ~~~~-------------------------~~~~~~~~p~~~-~----~~------------------------------- 245 (742)
T TIGR03817 227 SPRG-------------------------ARTVALWEPPLT-E----LT------------------------------- 245 (742)
T ss_pred CCcC-------------------------ceEEEEecCCcc-c----cc-------------------------------
Confidence 0000 000000000000 0 00
Q ss_pred HhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCch
Q 037446 393 LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFR 472 (1165)
Q Consensus 393 l~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr 472 (1165)
...+.. . .......+...+.+++. .+.++||||+++
T Consensus 246 -~~~~~~------------------~-----------------r~~~~~~~~~~l~~l~~--------~~~~~IVF~~sr 281 (742)
T TIGR03817 246 -GENGAP------------------V-----------------RRSASAEAADLLADLVA--------EGARTLTFVRSR 281 (742)
T ss_pred -cccccc------------------c-----------------ccchHHHHHHHHHHHHH--------CCCCEEEEcCCH
Confidence 000000 0 00000112222333332 257999999999
Q ss_pred HHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCC
Q 037446 473 GSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552 (1165)
Q Consensus 473 ~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S 552 (1165)
+.++.++..|+.... ....-.+.....+|+++++++|.+++++|++|++++||||+++++|||||++++||++|.|.+
T Consensus 282 ~~ae~l~~~l~~~l~--~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s 359 (742)
T TIGR03817 282 RGAELVAAIARRLLG--EVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGT 359 (742)
T ss_pred HHHHHHHHHHHHHHH--hhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCC
Confidence 999999999876410 000011223345677999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCC-CccceecC--hhHHHHHHHHHHHHhcCC-cccc--------cccccccHHHhhcCHHHHHHH-
Q 037446 553 PLRMIQRMGRTGRKHD-GRIPHIFK--PEVQFVELSIEQYVSRGK-KVKD--------DHAITTPIFKEKLTAAETDLI- 619 (1165)
Q Consensus 553 ~~~yiQriGRagR~Gq-Gkiv~v~~--~d~~~~~~~Ie~~l~~~~-~l~~--------~~~~~~~~f~~~l~~~e~~~l- 619 (1165)
...|+||+|||||.|+ |.++++.. +.+.+....+++++...- .... ..+..+.+.+..++.++.+.+
T Consensus 360 ~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~~~~~~n~~il~~hl~~aa~e~~l~~~~~~~~~ 439 (742)
T TIGR03817 360 RASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEATVFDPDNPYVLGPHLCCAAAELPLTEADLELFG 439 (742)
T ss_pred HHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccceeCCCcHHHHHHHHHHHHhcCCCChHHHHhhc
Confidence 9999999999999996 76666664 444555556665554321 1101 122222223323444333221
Q ss_pred ------HHHcCC---CCCCCCCccc------ccccccCCCccceeee-ccccccchHHHHHhhhcCCccCCCCc------
Q 037446 620 ------AKYFHP---TSDSTWRPSL------IAFPHFQALPSRVHKV-MHSFRTGMLIDMMQHLQGLTFSRDDR------ 677 (1165)
Q Consensus 620 ------~~~f~~---~k~~~~rp~L------~~f~~~~~~p~~~~~~-~~~~~t~~f~~~~~~~~~~~~~~~~~------ 677 (1165)
..++.. ...+...-.. .............+.+ +. .++..+..+++...+. +.+++
T Consensus 440 ~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~~i~lr~~~~~~~~v~~~--~~~~~ig~~d~~~a~~-~~~~gavy~~~ 516 (742)
T TIGR03817 440 PAAAEVLDQLVEQGLLRRRPAGWFWTRRERAHDAVDIRGGGGAPVAIVEA--ETGRLLGTVDAGAAHS-TVHPGAVYLHQ 516 (742)
T ss_pred hhHHHHHHHHHHCCcEEecCCceEecCCCCcccceEeecCCCCcEEEEEC--CCCeEEEEECHHHHHH-HhCCCcEEEEC
Confidence 111110 0000000000 0000111111111221 11 1122222222222211 11222
Q ss_pred --ceeeecccCCCccCcccccccccccccCCCccccccCCccccccccccccCCCCCCccCCCCccccccccceEEEEec
Q 037446 678 --TFVEDEVSSDKHLGLQTVEPCETDERDNFHGTKKVTDSELSTRTLGTQENHSMPQSCCKSPAAHAYLFGSDFISVDAL 755 (1165)
Q Consensus 678 --~~~~~e~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (1165)
+|.+.++.-..+.. .|+...++|.|..|++|+++..+....+... +...+ ||...|+..|+
T Consensus 517 g~~y~v~~~d~~~~~~-----~v~~~~~~y~T~~~~~~~v~~~~~~~~~~~~-----------~~~~~-~g~~~v~~~v~ 579 (742)
T TIGR03817 517 GESYVVDELDLEDGVA-----LVHAEDPDYTTFARETTDISVVEERRRRAWG-----------DVRVA-LGEVEVTSQVV 579 (742)
T ss_pred CeEEEEEEEECCCCEE-----EEEECCCCcEEeccceeeeeeeeeeeeeeeC-----------CEEEE-EEEEEEEEEEE
Confidence 77777776555555 7888888999999999999999887666322 46777 89999999999
Q ss_pred ceEEEE
Q 037446 756 GKVLII 761 (1165)
Q Consensus 756 ~~~~~~ 761 (1165)
||+-+=
T Consensus 580 gy~~~~ 585 (742)
T TIGR03817 580 GYLRRR 585 (742)
T ss_pred eEEEEE
Confidence 999764
No 17
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-43 Score=398.93 Aligned_cols=357 Identities=19% Similarity=0.223 Sum_probs=293.7
Q ss_pred CCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHh---CC--CC
Q 037446 81 EGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW---FP--DG 154 (1165)
Q Consensus 81 ~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~---~~--~~ 154 (1165)
....|++ +|+...+.+|...+|..+|.|| +..+..++.++++|.++.|||||||+|++|+++.|.. .+ +-
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ----~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGl 142 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQ----RDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGL 142 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHH----HhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCc
Confidence 3457888 9999999999999999999999 7788888888999999999999999999999988743 32 22
Q ss_pred eEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHc-CccCCCCccEEEEc
Q 037446 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS-GTCLMKYLVCLVID 233 (1165)
Q Consensus 155 rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~-~~~~l~~~~lVVID 233 (1165)
.+|||.|||+||.|+++.+.++........+++.||...........+.+|+||||++|+.++.. ..+.-.++.++|+|
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLD 222 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLD 222 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEec
Confidence 69999999999999999999998877788889999988655555557899999999999999875 55667889999999
Q ss_pred ccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEecc
Q 037446 234 EAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM 312 (1165)
Q Consensus 234 EAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~ 312 (1165)
||++++++ +|...+..|.. ++..+|+|+||||+...+.++..|. +.++ +++.+..
T Consensus 223 EADR~LDM-GFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLs---------------------L~dP--~~vsvhe 278 (758)
T KOG0343|consen 223 EADRMLDM-GFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLS---------------------LKDP--VYVSVHE 278 (758)
T ss_pred cHHHHHHH-hHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhh---------------------cCCC--cEEEEec
Confidence 99999996 99999999885 7888999999999998877665542 1111 1121110
Q ss_pred chhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 037446 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392 (1165)
Q Consensus 313 ~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~l 392 (1165)
...
T Consensus 279 ~a~----------------------------------------------------------------------------- 281 (758)
T KOG0343|consen 279 NAV----------------------------------------------------------------------------- 281 (758)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred HhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCch
Q 037446 393 LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFR 472 (1165)
Q Consensus 393 l~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr 472 (1165)
......+++.+.......|+..|..+|..|+ ..++|||.++.
T Consensus 282 --------------------------------~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shl------k~K~iVF~Ssc 323 (758)
T KOG0343|consen 282 --------------------------------AATPSNLQQSYVIVPLEDKIDMLWSFIKSHL------KKKSIVFLSSC 323 (758)
T ss_pred --------------------------------ccChhhhhheEEEEehhhHHHHHHHHHHhcc------ccceEEEEehh
Confidence 0011223344445556789999999998775 47999999999
Q ss_pred HHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCC
Q 037446 473 GSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552 (1165)
Q Consensus 473 ~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S 552 (1165)
+++.++++.+.+..+.++...+|| +|+|..|.+++.+|-.....||+|||+++||||+|.|++||++|.|.+
T Consensus 324 Kqvkf~~e~F~rlrpg~~l~~L~G--------~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPed 395 (758)
T KOG0343|consen 324 KQVKFLYEAFCRLRPGIPLLALHG--------TMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPED 395 (758)
T ss_pred hHHHHHHHHHHhcCCCCceeeecc--------chhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchh
Confidence 999999999999977788888887 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCC-CCccceecChhH-HHHHHHHHH
Q 037446 553 PLRMIQRMGRTGRKH-DGRIPHIFKPEV-QFVELSIEQ 588 (1165)
Q Consensus 553 ~~~yiQriGRagR~G-qGkiv~v~~~d~-~~~~~~Ie~ 588 (1165)
...|+||+||++|.+ +|...+++.|.+ ..+...+++
T Consensus 396 v~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~ 433 (758)
T KOG0343|consen 396 VDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQK 433 (758)
T ss_pred HHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHH
Confidence 999999999999999 588777777654 544444443
No 18
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-43 Score=378.84 Aligned_cols=397 Identities=20% Similarity=0.236 Sum_probs=298.7
Q ss_pred CCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCC-eEEEE
Q 037446 82 GSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG-KIVFA 159 (1165)
Q Consensus 82 ~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~-rvLIL 159 (1165)
...|+. ||++|+.+.+..+++..||+|| |..++..+.++|+|-++.||||||.+|++|+++.+...+.+ -+||+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ----~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvl 81 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQ----QACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVL 81 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchH----hhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEe
Confidence 357888 9999999999999999999999 77777777789999999999999999999999999888776 58999
Q ss_pred ecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHHHHHHcC----ccCCCCccEEEEcc
Q 037446 160 APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLEKDIQSG----TCLMKYLVCLVIDE 234 (1165)
Q Consensus 160 vPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~~~l~~~----~~~l~~~~lVVIDE 234 (1165)
.|||+|+.|..+.|.-+.......+.+++|+...-.+ ..+...++|+|+||++|..++... .+.+.++.++|+||
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 9999999999999988766667889999999887544 455667999999999999988753 44578899999999
Q ss_pred cccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccc
Q 037446 235 AHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMG 313 (1165)
Q Consensus 235 AHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~ 313 (1165)
|+++++. .|...+..+.. ++.++|.++||||..++.. .++. ..+. .. ....+...
T Consensus 162 ADrvL~~-~f~d~L~~i~e~lP~~RQtLlfSATitd~i~---ql~~----~~i~--------------k~--~a~~~e~~ 217 (442)
T KOG0340|consen 162 ADRVLAG-CFPDILEGIEECLPKPRQTLLFSATITDTIK---QLFG----CPIT--------------KS--IAFELEVI 217 (442)
T ss_pred hhhhhcc-chhhHHhhhhccCCCccceEEEEeehhhHHH---Hhhc----CCcc--------------cc--cceEEecc
Confidence 9999984 89888888876 5677899999999875532 2211 0000 00 00000000
Q ss_pred hhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 037446 314 QEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393 (1165)
Q Consensus 314 ~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll 393 (1165)
+.. .
T Consensus 218 ~~v-s--------------------------------------------------------------------------- 221 (442)
T KOG0340|consen 218 DGV-S--------------------------------------------------------------------------- 221 (442)
T ss_pred CCC-C---------------------------------------------------------------------------
Confidence 000 0
Q ss_pred hhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchH
Q 037446 394 SSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRG 473 (1165)
Q Consensus 394 ~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~ 473 (1165)
+...+.+.+.......|-..|+..|..+ ++.....++||+++..
T Consensus 222 ---------------------------------tvetL~q~yI~~~~~vkdaYLv~~Lr~~---~~~~~~simIFvnttr 265 (442)
T KOG0340|consen 222 ---------------------------------TVETLYQGYILVSIDVKDAYLVHLLRDF---ENKENGSIMIFVNTTR 265 (442)
T ss_pred ---------------------------------chhhhhhheeecchhhhHHHHHHHHhhh---hhccCceEEEEeehhH
Confidence 0000111111122234556677777664 2226789999999999
Q ss_pred HHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCH
Q 037446 474 SVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553 (1165)
Q Consensus 474 ~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~ 553 (1165)
+|+.|+..|+..+ +++..+|+ -|+|++|...+.+|+++..++|||||+++||+|||.|+.|||||.|..|
T Consensus 266 ~cQ~l~~~l~~le--~r~~~lHs--------~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P 335 (442)
T KOG0340|consen 266 ECQLLSMTLKNLE--VRVVSLHS--------QMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDP 335 (442)
T ss_pred HHHHHHHHHhhhc--eeeeehhh--------cchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCH
Confidence 9999999999998 88888876 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHhcCC-cccccccccccHHHh---hcCHHHHHHHHHHcCCCCC
Q 037446 554 LRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVSRGK-KVKDDHAITTPIFKE---KLTAAETDLIAKYFHPTSD 628 (1165)
Q Consensus 554 ~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~~~~-~l~~~~~~~~~~f~~---~l~~~e~~~l~~~f~~~k~ 628 (1165)
.+|+||+||++|.|. |..+-++.+........||+.+..+- ..+.........+.. .-.+.++++..+-|++..+
T Consensus 336 ~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~~~~~~~~t~V~~akrea~m~m~~~~F~er~q 415 (442)
T KOG0340|consen 336 KDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQRTVELYVTQVTVAKREAEMKMDNNGFGERAQ 415 (442)
T ss_pred HHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccchhhheehhhHHHHHHHHHHHhhhcchhHHHH
Confidence 999999999999995 77666666554455568888875432 111111111112221 1234556677777776644
No 19
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-41 Score=411.09 Aligned_cols=356 Identities=22% Similarity=0.309 Sum_probs=270.5
Q ss_pred CCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCC-------
Q 037446 82 GSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFP------- 152 (1165)
Q Consensus 82 ~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~------- 152 (1165)
...|.+ +|++.++++|...||..|+ ++|.+++..++. +|+|+.++||||||++|++|+++.+...+
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~-----~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~ 160 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCT-----PIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYM 160 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCC-----HHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccccccc
Confidence 356888 9999999999999998765 455677777765 89999999999999999999998876543
Q ss_pred -CCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH-Hhh-cCCccEEEEcHHHHHHHHHcCccCCCCccE
Q 037446 153 -DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR-ASF-WKTKRVFFVTPQVLEKDIQSGTCLMKYLVC 229 (1165)
Q Consensus 153 -~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~-~~l-~~~~dIlVaTpq~L~~~l~~~~~~l~~~~l 229 (1165)
..++|||+||++|+.|+.+.+..+.......+..++|+...... ..+ ...++|+|+||++|...+..+...+.++++
T Consensus 161 ~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~ 240 (475)
T PRK01297 161 GEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEV 240 (475)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCce
Confidence 35899999999999999999999876666778888888664432 222 346899999999999988888888999999
Q ss_pred EEEcccccccCccchHHHHHHHHcCC---CCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceE
Q 037446 230 LVIDEAHRATGNYAYCTAIRELMSVP---VQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIE 306 (1165)
Q Consensus 230 VVIDEAHrl~~~~~~~~~l~~L~~~~---~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~ 306 (1165)
|||||||++.+. +|...++.++... ...+++++|||...... .+...+ ...+.
T Consensus 241 lViDEah~l~~~-~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~---~~~~~~------------------~~~~~-- 296 (475)
T PRK01297 241 MVLDEADRMLDM-GFIPQVRQIIRQTPRKEERQTLLFSATFTDDVM---NLAKQW------------------TTDPA-- 296 (475)
T ss_pred EEechHHHHHhc-ccHHHHHHHHHhCCCCCCceEEEEEeecCHHHH---HHHHHh------------------ccCCE--
Confidence 999999999885 6766677666532 24689999999865432 222211 11110
Q ss_pred EEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHH
Q 037446 307 LIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITL 386 (1165)
Q Consensus 307 ~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l 386 (1165)
.+.+..... ... .
T Consensus 297 ~v~~~~~~~---------------------------------~~~---------------~------------------- 309 (475)
T PRK01297 297 IVEIEPENV---------------------------------ASD---------------T------------------- 309 (475)
T ss_pred EEEeccCcC---------------------------------CCC---------------c-------------------
Confidence 011100000 000 0
Q ss_pred HHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEE
Q 037446 387 YHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVI 466 (1165)
Q Consensus 387 ~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvI 466 (1165)
+.+.+.......|...|.+++.. ....++|
T Consensus 310 --------------------------------------------~~~~~~~~~~~~k~~~l~~ll~~------~~~~~~I 339 (475)
T PRK01297 310 --------------------------------------------VEQHVYAVAGSDKYKLLYNLVTQ------NPWERVM 339 (475)
T ss_pred --------------------------------------------ccEEEEEecchhHHHHHHHHHHh------cCCCeEE
Confidence 00000001112344445554432 2356999
Q ss_pred EEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEE
Q 037446 467 IFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546 (1165)
Q Consensus 467 VF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~ 546 (1165)
|||+++..++.+++.|...| +.+..++| ++++++|.++++.|++|++++||||+++++|||||++++||+
T Consensus 340 VF~~s~~~~~~l~~~L~~~~--~~~~~~~g--------~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~ 409 (475)
T PRK01297 340 VFANRKDEVRRIEERLVKDG--INAAQLSG--------DVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN 409 (475)
T ss_pred EEeCCHHHHHHHHHHHHHcC--CCEEEEEC--------CCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE
Confidence 99999999999999999888 77777776 789999999999999999999999999999999999999999
Q ss_pred eccCCCHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHhcC
Q 037446 547 FDANVSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVSRG 593 (1165)
Q Consensus 547 ~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~~~ 593 (1165)
||.|.|...|+||+||+||.|+ |.++.++..++.+....+++++...
T Consensus 410 ~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~ 457 (475)
T PRK01297 410 FTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRK 457 (475)
T ss_pred eCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999995 8888888887777777888877543
No 20
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.6e-42 Score=421.50 Aligned_cols=354 Identities=21% Similarity=0.265 Sum_probs=268.2
Q ss_pred CCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCC--------C
Q 037446 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP--------D 153 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~--------~ 153 (1165)
.+|++ +|++.++++|...||..||+|| +..+...+.++|+|+.++||+|||++|++|+++.+...+ .
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ----~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~ 84 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQ----ALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPED 84 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHH----HHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCC
Confidence 46988 9999999999999999988877 444444444589999999999999999999998774321 3
Q ss_pred CeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHH-hhcCCccEEEEcHHHHHHHHHcC-ccCCCCccEEE
Q 037446 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRA-SFWKTKRVFFVTPQVLEKDIQSG-TCLMKYLVCLV 231 (1165)
Q Consensus 154 ~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~-~l~~~~dIlVaTpq~L~~~l~~~-~~~l~~~~lVV 231 (1165)
.++|||+||++|+.|+.+.+.++.....+.+..++|+.....+. .+..+++|+|+||++|.+.+... .+.+..+++||
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lV 164 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICV 164 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeE
Confidence 58999999999999999999998776677788899988876544 34456899999999999988764 46788899999
Q ss_pred EcccccccCccchHHHHHHHHc-CCC--CCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEE
Q 037446 232 IDEAHRATGNYAYCTAIRELMS-VPV--QLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELI 308 (1165)
Q Consensus 232 IDEAHrl~~~~~~~~~l~~L~~-~~~--~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i 308 (1165)
|||||++.+. +|...+..++. ++. ..++++||||+..... .+... ++..+.. +
T Consensus 165 iDEAh~lld~-gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~---~l~~~------------------~l~~p~~--i 220 (572)
T PRK04537 165 LDEADRMFDL-GFIKDIRFLLRRMPERGTRQTLLFSATLSHRVL---ELAYE------------------HMNEPEK--L 220 (572)
T ss_pred ecCHHHHhhc-chHHHHHHHHHhcccccCceEEEEeCCccHHHH---HHHHH------------------HhcCCcE--E
Confidence 9999999875 77777777665 332 5789999999865432 22111 1111100 0
Q ss_pred EeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHH
Q 037446 309 EVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYH 388 (1165)
Q Consensus 309 ~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~ 388 (1165)
.+.... +....
T Consensus 221 ~v~~~~---------------------------------~~~~~------------------------------------ 231 (572)
T PRK04537 221 VVETET---------------------------------ITAAR------------------------------------ 231 (572)
T ss_pred Eecccc---------------------------------ccccc------------------------------------
Confidence 000000 00000
Q ss_pred HHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEE
Q 037446 389 IRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIF 468 (1165)
Q Consensus 389 i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF 468 (1165)
+.+.+.......|+..|+.++.. ..+.++|||
T Consensus 232 ------------------------------------------i~q~~~~~~~~~k~~~L~~ll~~------~~~~k~LVF 263 (572)
T PRK04537 232 ------------------------------------------VRQRIYFPADEEKQTLLLGLLSR------SEGARTMVF 263 (572)
T ss_pred ------------------------------------------eeEEEEecCHHHHHHHHHHHHhc------ccCCcEEEE
Confidence 00000001112345555555532 246799999
Q ss_pred eCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEec
Q 037446 469 SNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD 548 (1165)
Q Consensus 469 ~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D 548 (1165)
|+++..++.|++.|...+ +.+..+|| +|++.+|..+++.|++|+++|||||+++++|||+|++++||+||
T Consensus 264 ~nt~~~ae~l~~~L~~~g--~~v~~lhg--------~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd 333 (572)
T PRK04537 264 VNTKAFVERVARTLERHG--YRVGVLSG--------DVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYD 333 (572)
T ss_pred eCCHHHHHHHHHHHHHcC--CCEEEEeC--------CCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcC
Confidence 999999999999999988 77777776 79999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHh
Q 037446 549 ANVSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVS 591 (1165)
Q Consensus 549 ~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~ 591 (1165)
.|+++..|+||+||+||.|. |..+.++.++.......|++++.
T Consensus 334 ~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~ 377 (572)
T PRK04537 334 LPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIE 377 (572)
T ss_pred CCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHc
Confidence 99999999999999999994 88888877766555566666653
No 21
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.8e-42 Score=421.44 Aligned_cols=352 Identities=20% Similarity=0.289 Sum_probs=271.7
Q ss_pred CCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeEEEE
Q 037446 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIVFA 159 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rvLIL 159 (1165)
.+|++ +|++.+++++...||.+|+++| .+++..++. +++|+.++||+|||++|++|+++.+... ...++|||
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ-----~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL 80 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQ-----AECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVL 80 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHH-----HHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEE
Confidence 46888 9999999999999999887766 455555554 8999999999999999999999887543 34589999
Q ss_pred ecChhHHHHHHHHHHHHhCC-CCceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccccc
Q 037446 160 APSRPLVMQQIEACHNIVGI-PQEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHR 237 (1165)
Q Consensus 160 vPtr~La~Q~~~e~~kl~g~-~~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHr 237 (1165)
+||++|+.|+++++.++.+. +...++.++|+.....+ ..+..+++|+|+||++|.+++....+.+.++.+|||||||+
T Consensus 81 ~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 81 APTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE 160 (629)
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH
Confidence 99999999999999987654 35667788888775543 34556789999999999999998888899999999999999
Q ss_pred ccCccchHHHHHHHH-cCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhH
Q 037446 238 ATGNYAYCTAIRELM-SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316 (1165)
Q Consensus 238 l~~~~~~~~~l~~L~-~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~ 316 (1165)
++.. +|...+..++ .++...++++||||++..... +.. .|+..+. .+.+.....
T Consensus 161 ml~~-gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~---i~~------------------~~l~~~~--~i~i~~~~~- 215 (629)
T PRK11634 161 MLRM-GFIEDVETIMAQIPEGHQTALFSATMPEAIRR---ITR------------------RFMKEPQ--EVRIQSSVT- 215 (629)
T ss_pred Hhhc-ccHHHHHHHHHhCCCCCeEEEEEccCChhHHH---HHH------------------HHcCCCe--EEEccCccc-
Confidence 9885 6766666665 467778999999998765332 221 1121111 011100000
Q ss_pred HHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhC
Q 037446 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSH 396 (1165)
Q Consensus 317 ~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~ 396 (1165)
.. +.+
T Consensus 216 --------------------------------~~---------------~~i---------------------------- 220 (629)
T PRK11634 216 --------------------------------TR---------------PDI---------------------------- 220 (629)
T ss_pred --------------------------------cC---------------Cce----------------------------
Confidence 00 000
Q ss_pred CchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHH
Q 037446 397 GIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVR 476 (1165)
Q Consensus 397 g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae 476 (1165)
.+.+.......|...|.++|... ...++||||+++..++
T Consensus 221 -----------------------------------~q~~~~v~~~~k~~~L~~~L~~~------~~~~~IVF~~tk~~a~ 259 (629)
T PRK11634 221 -----------------------------------SQSYWTVWGMRKNEALVRFLEAE------DFDAAIIFVRTKNATL 259 (629)
T ss_pred -----------------------------------EEEEEEechhhHHHHHHHHHHhc------CCCCEEEEeccHHHHH
Confidence 00000011124566667666432 3568999999999999
Q ss_pred HHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHH
Q 037446 477 DIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556 (1165)
Q Consensus 477 ~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~y 556 (1165)
.|+..|...| +.+..+|| +|++.+|..++++|++|+++|||||+++++|||+|+|++||+||.|.++..|
T Consensus 260 ~l~~~L~~~g--~~~~~lhg--------d~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~y 329 (629)
T PRK11634 260 EVAEALERNG--YNSAALNG--------DMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESY 329 (629)
T ss_pred HHHHHHHhCC--CCEEEeeC--------CCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHH
Confidence 9999999988 77777776 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCC-CccceecChhHHHHHHHHHHHH
Q 037446 557 IQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 557 iQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
+||+||+||.|. |..++++.+.+......|++..
T Consensus 330 vqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~ 364 (629)
T PRK11634 330 VHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 (629)
T ss_pred HHHhccccCCCCcceEEEEechHHHHHHHHHHHHh
Confidence 999999999995 8888888776665666776654
No 22
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9e-43 Score=393.16 Aligned_cols=394 Identities=19% Similarity=0.256 Sum_probs=284.5
Q ss_pred CCCCCCCc-cCCHHHHHHHHH-CCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCC-----
Q 037446 80 NEGSSFDE-SLCHVQIDAEAA-KTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP----- 152 (1165)
Q Consensus 80 ~~~~sFee-~L~~~Ll~~L~~-~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~----- 152 (1165)
.....|.+ ||++.|++.|.. +++..||.|| ++.++..+.+++++|.++||||||++|++|+.+.|....
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQ----kq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~R 208 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQ----KQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQR 208 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHh----hcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccc
Confidence 44567888 999999999965 7999999999 777777777799999999999999999999999885432
Q ss_pred --CCeEEEEecChhHHHHHHHHHHHHhCCCCceEE---EEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHc-CccCCCC
Q 037446 153 --DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTI---DMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS-GTCLMKY 226 (1165)
Q Consensus 153 --~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~---~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~-~~~~l~~ 226 (1165)
+..+|||||||+|+.|.++.+.+++.. ..|++ ++.|.....++.+++++.+|+|+||++|.+++.+ ..+.+.+
T Consensus 209 s~G~~ALVivPTREL~~Q~y~~~qKLl~~-~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~ 287 (708)
T KOG0348|consen 209 SDGPYALVIVPTRELALQIYETVQKLLKP-FHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSR 287 (708)
T ss_pred cCCceEEEEechHHHHHHHHHHHHHHhcC-ceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeee
Confidence 346999999999999999999998764 34432 3445555678889999999999999999999976 6677889
Q ss_pred ccEEEEcccccccCccchHHHHHHHHc--------------CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCc
Q 037446 227 LVCLVIDEAHRATGNYAYCTAIRELMS--------------VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNES 292 (1165)
Q Consensus 227 ~~lVVIDEAHrl~~~~~~~~~l~~L~~--------------~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~ 292 (1165)
+.+||+||||++++. +|.+.+..|++ ++.+.+.++||||....+..+.++.
T Consensus 288 LRwlVlDEaDrlleL-Gfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~s-------------- 352 (708)
T KOG0348|consen 288 LRWLVLDEADRLLEL-GFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLS-------------- 352 (708)
T ss_pred eeEEEecchhHHHhc-cchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhcc--------------
Confidence 999999999999984 88887777764 2334678999999987765454432
Q ss_pred hhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCccc
Q 037446 293 DQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIK 372 (1165)
Q Consensus 293 ~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~ 372 (1165)
+++ ++.+.++....... |-..-+ ...++
T Consensus 353 -------LkD----pv~I~ld~s~~~~~--------p~~~a~-----------~ev~~---------------------- 380 (708)
T KOG0348|consen 353 -------LKD----PVYISLDKSHSQLN--------PKDKAV-----------QEVDD---------------------- 380 (708)
T ss_pred -------ccC----ceeeeccchhhhcC--------cchhhh-----------hhcCC----------------------
Confidence 000 11111110000000 000000 00000
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHH
Q 037446 373 FGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLV 452 (1165)
Q Consensus 373 ~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~ 452 (1165)
+....-+ +...+...+.+.+......-++-+|..+|.
T Consensus 381 ---------------------------------------~~~~~~l----~~~~iPeqL~qry~vVPpKLRLV~Laa~L~ 417 (708)
T KOG0348|consen 381 ---------------------------------------GPAGDKL----DSFAIPEQLLQRYTVVPPKLRLVALAALLL 417 (708)
T ss_pred ---------------------------------------ccccccc----ccccCcHHhhhceEecCCchhHHHHHHHHH
Confidence 0000000 001122333444445556667778888888
Q ss_pred HhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCC----cc--------ceeeecccccccCCCCCHHHHHHHHHHHhc
Q 037446 453 DHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL----VK--------ATEFIGQSSGKASKGQSQKVQQAVLEKFRA 520 (1165)
Q Consensus 453 ~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~----i~--------~~~l~G~~~g~~~ggms~~eR~~il~~Fr~ 520 (1165)
..+. .....|+|||.++.+.+++-+..|...-+. .+ ...+.+....++||+|+|++|..+++.|..
T Consensus 418 ~~~k--~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~ 495 (708)
T KOG0348|consen 418 NKVK--FEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSH 495 (708)
T ss_pred HHhh--hhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhcc
Confidence 7765 224569999999999999999888664211 00 011111122467889999999999999998
Q ss_pred CCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHHHHHHHHHH
Q 037446 521 GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 521 g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
..-.||+|||+++||||+|.|.+||+||+|.++++|+||+||++|+| .|..++++.|.+..+...++.+.
T Consensus 496 ~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 496 SRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred ccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhc
Confidence 88889999999999999999999999999999999999999999999 59888888776655555555543
No 23
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-42 Score=360.27 Aligned_cols=358 Identities=19% Similarity=0.250 Sum_probs=283.5
Q ss_pred CCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCC-CCeEE
Q 037446 80 NEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP-DGKIV 157 (1165)
Q Consensus 80 ~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~-~~rvL 157 (1165)
....+|++ +|.+.|+++++..||..|+.|| |.++...+.++++|+.+..|+|||.+|.+-+++.+.-.. ...+|
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQ----qrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~l 99 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQ----QRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQAL 99 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHH----hhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEE
Confidence 34458999 9999999999999999999999 889999899999999999999999999888887764433 35799
Q ss_pred EEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHH-HHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccc
Q 037446 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAH 236 (1165)
Q Consensus 158 ILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAH 236 (1165)
|+.|||+|+.|..+.+..+.+..++.+....|+.+..+ -+.+-.+.+++.+||+++.+++.++.+.-..++++|+|||+
T Consensus 100 ilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaD 179 (400)
T KOG0328|consen 100 ILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEAD 179 (400)
T ss_pred EecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHH
Confidence 99999999999999999988777888888888887433 23334678999999999999999999999999999999999
Q ss_pred cccCccchHHHHHHHH-cCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchh
Q 037446 237 RATGNYAYCTAIRELM-SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQE 315 (1165)
Q Consensus 237 rl~~~~~~~~~l~~L~-~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~ 315 (1165)
.+++. +|..++-.+. .+++..|++++|||.+.. +.+.. ..|+.++. . +.+..++.
T Consensus 180 emL~k-gfk~Qiydiyr~lp~~~Qvv~~SATlp~e---ilemt------------------~kfmtdpv-r-ilvkrdel 235 (400)
T KOG0328|consen 180 EMLNK-GFKEQIYDIYRYLPPGAQVVLVSATLPHE---ILEMT------------------EKFMTDPV-R-ILVKRDEL 235 (400)
T ss_pred HHHHh-hHHHHHHHHHHhCCCCceEEEEeccCcHH---HHHHH------------------HHhcCCce-e-EEEecCCC
Confidence 99986 7766655555 467789999999998643 22222 22332221 1 11111100
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhh
Q 037446 316 AVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395 (1165)
Q Consensus 316 ~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~ 395 (1165)
. .
T Consensus 236 t------------------------------------------------------------------------------l 237 (400)
T KOG0328|consen 236 T------------------------------------------------------------------------------L 237 (400)
T ss_pred c------------------------------------------------------------------------------h
Confidence 0 0
Q ss_pred CCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHH
Q 037446 396 HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475 (1165)
Q Consensus 396 ~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~a 475 (1165)
.|+++++... .....|+..|+++-..+ .-..++|||+++..+
T Consensus 238 EgIKqf~v~v--------------------------------e~EewKfdtLcdLYd~L------tItQavIFcnTk~kV 279 (400)
T KOG0328|consen 238 EGIKQFFVAV--------------------------------EKEEWKFDTLCDLYDTL------TITQAVIFCNTKRKV 279 (400)
T ss_pred hhhhhheeee--------------------------------chhhhhHhHHHHHhhhh------ehheEEEEecccchh
Confidence 1111111110 11134666666554322 367999999999999
Q ss_pred HHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHH
Q 037446 476 RDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555 (1165)
Q Consensus 476 e~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~ 555 (1165)
++|.+.++... +.+..+|| .|.+++|.++++.|++|+.+|||+||+.+||+|+|.|++|||||.|.+...
T Consensus 280 dwLtekm~~~n--ftVssmHG--------Dm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~ 349 (400)
T KOG0328|consen 280 DWLTEKMREAN--FTVSSMHG--------DMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNREL 349 (400)
T ss_pred hHHHHHHHhhC--ceeeeccC--------CcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHH
Confidence 99999999887 66655655 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCC-CCccceecChhHHHHHHHHHHHHh
Q 037446 556 MIQRMGRTGRKH-DGRIPHIFKPEVQFVELSIEQYVS 591 (1165)
Q Consensus 556 yiQriGRagR~G-qGkiv~v~~~d~~~~~~~Ie~~l~ 591 (1165)
|+||+||.||.| +|..+-++..+.......|+++..
T Consensus 350 YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~ys 386 (400)
T KOG0328|consen 350 YIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYS 386 (400)
T ss_pred HhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHh
Confidence 999999999999 588888888887777778888874
No 24
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-41 Score=374.51 Aligned_cols=346 Identities=23% Similarity=0.280 Sum_probs=266.1
Q ss_pred CCCCc---cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC----CCC
Q 037446 83 SSFDE---SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF----PDG 154 (1165)
Q Consensus 83 ~sFee---~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~----~~~ 154 (1165)
.+|++ +|++++++++...||.+.|++| ...+..++. +++++-++||||||++|++|+++.+... +++
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQ-----a~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~ 78 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQ-----AATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG 78 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHH-----HhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc
Confidence 35665 8889999999999999999887 455555555 8999999999999999999999988322 223
Q ss_pred --eEEEEecChhHHHHHHHHHHHHhCC-CCceEEEEeCCCChHHH--HhhcCCccEEEEcHHHHHHHHHcC--ccCCCCc
Q 037446 155 --KIVFAAPSRPLVMQQIEACHNIVGI-PQEWTIDMTGQISPTKR--ASFWKTKRVFFVTPQVLEKDIQSG--TCLMKYL 227 (1165)
Q Consensus 155 --rvLILvPtr~La~Q~~~e~~kl~g~-~~~~v~~l~G~~~~~~~--~~l~~~~dIlVaTpq~L~~~l~~~--~~~l~~~ 227 (1165)
.+|||+|||+|+.|+.+.+..+... +.+.+..+.||...... ....+++.|+|+||++|.+.+.+. .+.+..+
T Consensus 79 ~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsL 158 (567)
T KOG0345|consen 79 QVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSL 158 (567)
T ss_pred ceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhcccccc
Confidence 5899999999999999998877643 67778888898765442 222356899999999999999873 3445699
Q ss_pred cEEEEcccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceE
Q 037446 228 VCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIE 306 (1165)
Q Consensus 228 ~lVVIDEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~ 306 (1165)
.++|+||||++++. +|...+..|+. +++++++=+||||....++++... .+.+ ..
T Consensus 159 e~LVLDEADrLldm-gFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~ra---------------------GLRN--pv 214 (567)
T KOG0345|consen 159 EILVLDEADRLLDM-GFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARA---------------------GLRN--PV 214 (567)
T ss_pred ceEEecchHhHhcc-cHHHHHHHHHHhcccccccccccchhhHHHHHHHHh---------------------hccC--ce
Confidence 99999999999995 99998888875 788999999999986654432211 0111 11
Q ss_pred EEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHH
Q 037446 307 LIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITL 386 (1165)
Q Consensus 307 ~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l 386 (1165)
.+.+... .. ...|..
T Consensus 215 ~V~V~~k--~~-----------------------------~~tPS~---------------------------------- 229 (567)
T KOG0345|consen 215 RVSVKEK--SK-----------------------------SATPSS---------------------------------- 229 (567)
T ss_pred eeeeccc--cc-----------------------------ccCchh----------------------------------
Confidence 1111100 00 000000
Q ss_pred HHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEE
Q 037446 387 YHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVI 466 (1165)
Q Consensus 387 ~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvI 466 (1165)
+...+..+....|+..|+++|..+ ...|+|
T Consensus 230 --------------------------------------------L~~~Y~v~~a~eK~~~lv~~L~~~------~~kK~i 259 (567)
T KOG0345|consen 230 --------------------------------------------LALEYLVCEADEKLSQLVHLLNNN------KDKKCI 259 (567)
T ss_pred --------------------------------------------hcceeeEecHHHHHHHHHHHHhcc------ccccEE
Confidence 000111223456888899988653 578999
Q ss_pred EEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEE
Q 037446 467 IFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546 (1165)
Q Consensus 467 VF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~ 546 (1165)
||.++...+++....|...-.......+|| .|++..|..+++.|++..-.+|+|||+++||||||++++||+
T Consensus 260 VFF~TCasVeYf~~~~~~~l~~~~i~~iHG--------K~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ 331 (567)
T KOG0345|consen 260 VFFPTCASVEYFGKLFSRLLKKREIFSIHG--------KMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ 331 (567)
T ss_pred EEecCcchHHHHHHHHHHHhCCCcEEEecc--------hhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe
Confidence 999999999999999988733356666665 789999999999999977789999999999999999999999
Q ss_pred eccCCCHHHHHHHHhhcCCCC-CCccceecChhHH
Q 037446 547 FDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQ 580 (1165)
Q Consensus 547 ~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~ 580 (1165)
||+|.++..|+||.||++|.| +|..++++.+.+.
T Consensus 332 ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~ 366 (567)
T KOG0345|consen 332 FDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREE 366 (567)
T ss_pred cCCCCChhHHHhhcchhhhccCccceEEEecccHH
Confidence 999999999999999999999 6997777777544
No 25
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-41 Score=361.96 Aligned_cols=360 Identities=21% Similarity=0.266 Sum_probs=290.4
Q ss_pred CCCCCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHh-hcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCC
Q 037446 77 EEFNEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTA-LFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG 154 (1165)
Q Consensus 77 ~~~~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~l-l~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~ 154 (1165)
.....+..|++ .|...|+..+.+.||..|++|| .+.+..+ .++++|+-+..|+|||-+|.+|+++.+......
T Consensus 79 Vt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQ-----eesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~ 153 (459)
T KOG0326|consen 79 VTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQ-----EESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNV 153 (459)
T ss_pred cccccCccHHHhhhhHHHHHHHHHhccCCCCCcc-----ccccceeecchhhhhhccCCCCCccceechhhhhcCccccc
Confidence 34445668999 9999999999999999999998 4444444 459999999999999999999999988644333
Q ss_pred -eEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHH-HHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEE
Q 037446 155 -KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVI 232 (1165)
Q Consensus 155 -rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVI 232 (1165)
.++|++|||+||.|..+.+..+.....+.+.+.+||++... --++....+++|+||++++++..++...+++..++|+
T Consensus 154 IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~ 233 (459)
T KOG0326|consen 154 IQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVM 233 (459)
T ss_pred eeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEe
Confidence 69999999999999999999987777788888899987543 2345567899999999999999999999999999999
Q ss_pred cccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEec
Q 037446 233 DEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVE 311 (1165)
Q Consensus 233 DEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~ 311 (1165)
|||+.+++. .|...+..++. +++.+|++++|||.+..+..+ +.+|+++|
T Consensus 234 DEADKlLs~-~F~~~~e~li~~lP~~rQillySATFP~tVk~F---------------------m~~~l~kP-------- 283 (459)
T KOG0326|consen 234 DEADKLLSV-DFQPIVEKLISFLPKERQILLYSATFPLTVKGF---------------------MDRHLKKP-------- 283 (459)
T ss_pred chhhhhhch-hhhhHHHHHHHhCCccceeeEEecccchhHHHH---------------------HHHhccCc--------
Confidence 999999985 88888888875 788899999999987654322 12233222
Q ss_pred cchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 037446 312 MGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRR 391 (1165)
Q Consensus 312 ~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ 391 (1165)
|.+.|+ +
T Consensus 284 ------------------y~INLM-------------------------------------------------------~ 290 (459)
T KOG0326|consen 284 ------------------YEINLM-------------------------------------------------------E 290 (459)
T ss_pred ------------------ceeehh-------------------------------------------------------h
Confidence 111111 1
Q ss_pred HHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCc
Q 037446 392 LLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNF 471 (1165)
Q Consensus 392 ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~s 471 (1165)
.+...|+.++|..++ .+.|+..|--++.++ .-...||||++
T Consensus 291 eLtl~GvtQyYafV~---------------------------------e~qKvhCLntLfskL------qINQsIIFCNS 331 (459)
T KOG0326|consen 291 ELTLKGVTQYYAFVE---------------------------------ERQKVHCLNTLFSKL------QINQSIIFCNS 331 (459)
T ss_pred hhhhcchhhheeeec---------------------------------hhhhhhhHHHHHHHh------cccceEEEecc
Confidence 122234444443332 235555555555443 35789999999
Q ss_pred hHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCC
Q 037446 472 RGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551 (1165)
Q Consensus 472 r~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~ 551 (1165)
.+.++.|++.+.+.| +.+..+|. .|.++.|..++..|++|.++.|||||.+-||||++++++|||||.|.
T Consensus 332 ~~rVELLAkKITelG--yscyyiHa--------kM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk 401 (459)
T KOG0326|consen 332 TNRVELLAKKITELG--YSCYYIHA--------KMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK 401 (459)
T ss_pred chHhHHHHHHHHhcc--chhhHHHH--------HHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC
Confidence 999999999999999 77766665 79999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHhcC
Q 037446 552 SPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVSRG 593 (1165)
Q Consensus 552 S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~~~ 593 (1165)
+++.|+||+||.||.|. |-.+-+.+-++.+....||+.+...
T Consensus 402 ~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtE 444 (459)
T KOG0326|consen 402 NAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTE 444 (459)
T ss_pred CHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccc
Confidence 99999999999999995 9888888888888888999888543
No 26
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.3e-39 Score=385.50 Aligned_cols=353 Identities=19% Similarity=0.247 Sum_probs=261.8
Q ss_pred CCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeEEEE
Q 037446 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIVFA 159 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rvLIL 159 (1165)
.+|++ ++++.+++++...+|..|+++| .+++..++. +++++.+|||+|||++|++++++.+... ...++|||
T Consensus 28 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q-----~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil 102 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYSYGFEKPSAIQ-----QRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALIL 102 (401)
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHH-----HHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 57888 9999999999999998766655 556666655 8999999999999999999999887543 34689999
Q ss_pred ecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHH-HHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccc
Q 037446 160 APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRA 238 (1165)
Q Consensus 160 vPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl 238 (1165)
+|+++|+.|+.+.+..+.......+..+.|+..... ...+..+.+|+|+||++|.+.+....+.+.++++|||||||++
T Consensus 103 ~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~ 182 (401)
T PTZ00424 103 APTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEM 182 (401)
T ss_pred CCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHH
Confidence 999999999999998877655566666777765433 3445566899999999999998887788999999999999999
Q ss_pred cCccchHHHHHHHH-cCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHH
Q 037446 239 TGNYAYCTAIRELM-SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAV 317 (1165)
Q Consensus 239 ~~~~~~~~~l~~L~-~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~ 317 (1165)
... ++...+..+. .++...+++++|||+++... .+... ++..+.. +.+.....
T Consensus 183 ~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~---~~~~~------------------~~~~~~~--~~~~~~~~-- 236 (401)
T PTZ00424 183 LSR-GFKGQIYDVFKKLPPDVQVALFSATMPNEIL---ELTTK------------------FMRDPKR--ILVKKDEL-- 236 (401)
T ss_pred Hhc-chHHHHHHHHhhCCCCcEEEEEEecCCHHHH---HHHHH------------------HcCCCEE--EEeCCCCc--
Confidence 875 5655444444 56677899999999875322 21111 1111100 00000000
Q ss_pred HHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCC
Q 037446 318 EINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397 (1165)
Q Consensus 318 ~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g 397 (1165)
.. .+
T Consensus 237 -------------------------------~~---------------------------------------------~~ 240 (401)
T PTZ00424 237 -------------------------------TL---------------------------------------------EG 240 (401)
T ss_pred -------------------------------cc---------------------------------------------CC
Confidence 00 00
Q ss_pred chHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHH
Q 037446 398 IRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRD 477 (1165)
Q Consensus 398 ~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~ 477 (1165)
.... ... ......+...+.+++.. ....++||||++++.++.
T Consensus 241 ~~~~----------------~~~----------------~~~~~~~~~~l~~~~~~------~~~~~~ivF~~t~~~~~~ 282 (401)
T PTZ00424 241 IRQF----------------YVA----------------VEKEEWKFDTLCDLYET------LTITQAIIYCNTRRKVDY 282 (401)
T ss_pred ceEE----------------EEe----------------cChHHHHHHHHHHHHHh------cCCCeEEEEecCcHHHHH
Confidence 0000 000 00000122223333321 135689999999999999
Q ss_pred HHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHH
Q 037446 478 IMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557 (1165)
Q Consensus 478 L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yi 557 (1165)
+++.|...+ +.+..+|| +|++.+|..+++.|++|+++|||||+++++|||+|++++||++|+|.+...|+
T Consensus 283 l~~~l~~~~--~~~~~~h~--------~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~ 352 (401)
T PTZ00424 283 LTKKMHERD--FTVSCMHG--------DMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYI 352 (401)
T ss_pred HHHHHHHCC--CcEEEEeC--------CCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEe
Confidence 999999887 66666665 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCC-CCccceecChhHHHHHHHHHHHH
Q 037446 558 QRMGRTGRKH-DGRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 558 QriGRagR~G-qGkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
||+||+||.| .|.++.++.++.......+++..
T Consensus 353 qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~ 386 (401)
T PTZ00424 353 HRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHY 386 (401)
T ss_pred ecccccccCCCCceEEEEEcHHHHHHHHHHHHHH
Confidence 9999999999 58888888887666665666655
No 27
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.7e-41 Score=383.07 Aligned_cols=372 Identities=22% Similarity=0.279 Sum_probs=287.7
Q ss_pred CCCCCCCCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCC
Q 037446 74 QGTEEFNEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP 152 (1165)
Q Consensus 74 ~~~~~~~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~ 152 (1165)
.+...+.....|++ .+.+.+...+...+|..||+|| |..+.....+++++++|+||+|||.+|++|++.++....
T Consensus 65 ~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQ----k~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~ 140 (482)
T KOG0335|consen 65 SGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQ----KYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEG 140 (482)
T ss_pred cCCccCCCcccccccchhHHHhhccccccccCCCcce----eeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcC
Confidence 44555555558888 9999999999999999999999 555555555589999999999999999999999885442
Q ss_pred -----------CCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHH-HHhhcCCccEEEEcHHHHHHHHHcC
Q 037446 153 -----------DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQSG 220 (1165)
Q Consensus 153 -----------~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l~~~ 220 (1165)
.+++||++|||+|+.|.+.+.+++.+......+..+|+.+... ...+..+++|+|+||++|.+.+..+
T Consensus 141 ~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g 220 (482)
T KOG0335|consen 141 PEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG 220 (482)
T ss_pred cccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc
Confidence 2589999999999999999999998888888888888866543 3456678999999999999999999
Q ss_pred ccCCCCccEEEEcccccccCccchHHHHHHHHcCC-----CCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhh
Q 037446 221 TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP-----VQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQD 295 (1165)
Q Consensus 221 ~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~-----~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~ 295 (1165)
.+.+.+++++|+|||++|++..+|...++.+.... ..+|.++||||.+...+.+...+
T Consensus 221 ~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~f----------------- 283 (482)
T KOG0335|consen 221 KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADF----------------- 283 (482)
T ss_pred eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHH-----------------
Confidence 99999999999999999999669999999998632 45789999999865433211111
Q ss_pred hhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchh
Q 037446 296 VSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGE 375 (1165)
Q Consensus 296 i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~ 375 (1165)
+.+..+..-....+....
T Consensus 284 ----l~~~yi~laV~rvg~~~~---------------------------------------------------------- 301 (482)
T KOG0335|consen 284 ----LKDNYIFLAVGRVGSTSE---------------------------------------------------------- 301 (482)
T ss_pred ----hhccceEEEEeeeccccc----------------------------------------------------------
Confidence 000000000000000000
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhh
Q 037446 376 VEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHF 455 (1165)
Q Consensus 376 l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~ 455 (1165)
.+.+.+.......|...|+++|....
T Consensus 302 ------------------------------------------------------ni~q~i~~V~~~~kr~~Lldll~~~~ 327 (482)
T KOG0335|consen 302 ------------------------------------------------------NITQKILFVNEMEKRSKLLDLLNKDD 327 (482)
T ss_pred ------------------------------------------------------cceeEeeeecchhhHHHHHHHhhccc
Confidence 00011111223456777777776543
Q ss_pred cc---cCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccc
Q 037446 456 KT---KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIG 532 (1165)
Q Consensus 456 ~~---~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~ 532 (1165)
.. ......+++|||.+++.|..|+..|...+ +++..+|| ..++.+|.+.++.|+.|.+.+||||+++
T Consensus 328 ~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~--~~~~sIhg--------~~tq~er~~al~~Fr~g~~pvlVaT~Va 397 (482)
T KOG0335|consen 328 GPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG--YPAKSIHG--------DRTQIEREQALNDFRNGKAPVLVATNVA 397 (482)
T ss_pred CCcccCCcccceEEEEeeccchhhHHHHHHhcCC--CCceeecc--------hhhhhHHHHHHHHhhcCCcceEEEehhh
Confidence 20 11123499999999999999999999999 88888887 5699999999999999999999999999
Q ss_pred cccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHhc
Q 037446 533 EEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVSR 592 (1165)
Q Consensus 533 ~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~~ 592 (1165)
+||||||+|.+||+||.|.+..+|+||+||+||.|. |+.+.+++.....+.+.+-+.+.+
T Consensus 398 aRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 398 ARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred hcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999996 888888876555555555555533
No 28
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-41 Score=380.27 Aligned_cols=380 Identities=20% Similarity=0.232 Sum_probs=269.4
Q ss_pred CCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC---------
Q 037446 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF--------- 151 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~--------- 151 (1165)
..|.. .|+..++.+|..+||..||+|| -.-++.++.+ .++|.+|.|||||||+|.+||++.+...
T Consensus 181 sAW~~l~lp~~iL~aL~~~gFs~Pt~IQ----sl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 181 SAWKNLFLPMEILRALSNLGFSRPTEIQ----SLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred HHHhcCCCCHHHHHHHHhcCCCCCccch----hhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 34666 9999999999999999999999 5566666677 7999999999999999999999854221
Q ss_pred -----CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcC-CccEEEEcHHHHHHHHHcCcc---
Q 037446 152 -----PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK-TKRVFFVTPQVLEKDIQSGTC--- 222 (1165)
Q Consensus 152 -----~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~-~~dIlVaTpq~L~~~l~~~~~--- 222 (1165)
+...+||++|||+|+.|+.+.|..+...+++.+..++||.....+++++. .++|+|+||++|+.++.....
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 22349999999999999999999999999999999999999877665544 689999999999999976444
Q ss_pred CCCCccEEEEcccccccCccchHHHHHHHHc------CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhh
Q 037446 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELMS------VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDV 296 (1165)
Q Consensus 223 ~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~------~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i 296 (1165)
.+.++.|+|+|||+||.....|.+ +..|+. ...++|.+.||||..-... +.+-..
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~E-ls~lL~~L~e~~~~~qrQTlVFSATlt~~~~--~~~~~~---------------- 397 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEE-LSKLLKHLNEEQKNRQRQTLVFSATLTLVLQ--QPLSSS---------------- 397 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHH-HHHHHHHhhhhhcccccceEEEEEEeehhhc--ChhHHh----------------
Confidence 467788999999999998744443 333332 3466899999999742210 000000
Q ss_pred hhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhh
Q 037446 297 SSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEV 376 (1165)
Q Consensus 297 ~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l 376 (1165)
... ..........+ ...+..+ ++-.++.
T Consensus 398 ---~k~----------~~k~~~~~~ki----q~Lmk~i---g~~~kpk-------------------------------- 425 (731)
T KOG0347|consen 398 ---RKK----------KDKEDELNAKI----QHLMKKI---GFRGKPK-------------------------------- 425 (731)
T ss_pred ---hhc----------cchhhhhhHHH----HHHHHHh---CccCCCe--------------------------------
Confidence 000 00000000000 0000000 0000000
Q ss_pred HHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhc
Q 037446 377 EAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFK 456 (1165)
Q Consensus 377 ~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~ 456 (1165)
+++.+....... .+-.....+....|--.|.-+|..|
T Consensus 426 ----------------------------------------iiD~t~q~~ta~-~l~Es~I~C~~~eKD~ylyYfl~ry-- 462 (731)
T KOG0347|consen 426 ----------------------------------------IIDLTPQSATAS-TLTESLIECPPLEKDLYLYYFLTRY-- 462 (731)
T ss_pred ----------------------------------------eEecCcchhHHH-HHHHHhhcCCccccceeEEEEEeec--
Confidence 000000000000 0111111223333333344344332
Q ss_pred ccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccc
Q 037446 457 TKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGL 536 (1165)
Q Consensus 457 ~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGL 536 (1165)
.+++|||||+.+.+..|+-.|+..+ +.+..+|. .|.|++|...+++|++..-.||||||+++|||
T Consensus 463 -----PGrTlVF~NsId~vKRLt~~L~~L~--i~p~~LHA--------~M~QKqRLknLEkF~~~~~~VLiaTDVAARGL 527 (731)
T KOG0347|consen 463 -----PGRTLVFCNSIDCVKRLTVLLNNLD--IPPLPLHA--------SMIQKQRLKNLEKFKQSPSGVLIATDVAARGL 527 (731)
T ss_pred -----CCceEEEechHHHHHHHHHHHhhcC--CCCchhhH--------HHHHHHHHHhHHHHhcCCCeEEEeehhhhccC
Confidence 6799999999999999999999998 88877776 79999999999999999999999999999999
Q ss_pred cccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHhcCCc
Q 037446 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVSRGKK 595 (1165)
Q Consensus 537 DIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~~~~~ 595 (1165)
|||+|.+||||-.|.+...|+||.||++|.+. |-.++++.|.+......+.+.+.+..-
T Consensus 528 DIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 528 DIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred CCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999995 888888887664444455555554443
No 29
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.9e-40 Score=357.71 Aligned_cols=353 Identities=18% Similarity=0.229 Sum_probs=266.7
Q ss_pred CCCCCCCCCCc--cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHH-----
Q 037446 77 EEFNEGSSFDE--SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFR----- 149 (1165)
Q Consensus 77 ~~~~~~~sFee--~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~----- 149 (1165)
..+.+.++|++ .-.+.+++.+...||.+||+||- ++.+-.|.+.++|..+.||+|||++|++|-+-.+.
T Consensus 213 pIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqS----QaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~ 288 (629)
T KOG0336|consen 213 PIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQS----QAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKR 288 (629)
T ss_pred cCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchh----cccceeecCcceEEEEecCCCcCHHHhccceeeeeccchh
Confidence 45678899999 99999999999999999999993 34444455699999999999999999999765442
Q ss_pred --hCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEe-CCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCC
Q 037446 150 --WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMT-GQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKY 226 (1165)
Q Consensus 150 --~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~-G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~ 226 (1165)
+.....+|+++||++|+.|+.-++.++. ..+...+.++ |+....+-+.+.++.+|+++||++|.++...+.+.+..
T Consensus 289 ~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~s 367 (629)
T KOG0336|consen 289 REQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLAS 367 (629)
T ss_pred hhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeee
Confidence 2344579999999999999999988763 3334444444 45555556778889999999999999999999999999
Q ss_pred ccEEEEcccccccCccchHHHHHHHH-cCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCce
Q 037446 227 LVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKI 305 (1165)
Q Consensus 227 ~~lVVIDEAHrl~~~~~~~~~l~~L~-~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~ 305 (1165)
+.|||+|||++|+++ +|...+++++ ...+.+++++.|||.+..+..+.. .|+..+.+
T Consensus 368 iTYlVlDEADrMLDM-gFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~---------------------sY~Kep~~ 425 (629)
T KOG0336|consen 368 ITYLVLDEADRMLDM-GFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQ---------------------SYLKEPMI 425 (629)
T ss_pred eEEEEecchhhhhcc-cccHHHHHHhhhcCCcceeeeecccCchHHHHHHH---------------------HhhhCceE
Confidence 999999999999996 8888877765 688899999999998766533322 23333221
Q ss_pred EEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHH
Q 037446 306 ELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALIT 385 (1165)
Q Consensus 306 ~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~ 385 (1165)
..+- .+. |.. .
T Consensus 426 v~vG-sLd----------------------------------L~a----------------------~------------ 436 (629)
T KOG0336|consen 426 VYVG-SLD----------------------------------LVA----------------------V------------ 436 (629)
T ss_pred EEec-ccc----------------------------------eee----------------------e------------
Confidence 1110 000 000 0
Q ss_pred HHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeE
Q 037446 386 LYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRV 465 (1165)
Q Consensus 386 l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kv 465 (1165)
.. +.+.+.....+.|+..+-.++ + ......|+
T Consensus 437 ----------~s---------------------------------VkQ~i~v~~d~~k~~~~~~f~-~----~ms~ndKv 468 (629)
T KOG0336|consen 437 ----------KS---------------------------------VKQNIIVTTDSEKLEIVQFFV-A----NMSSNDKV 468 (629)
T ss_pred ----------ee---------------------------------eeeeEEecccHHHHHHHHHHH-H----hcCCCceE
Confidence 00 001111112334553333333 3 23368899
Q ss_pred EEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEE
Q 037446 466 IIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI 545 (1165)
Q Consensus 466 IVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI 545 (1165)
||||.++-.|+.|...|.-.| +.+..+|| +-.|.+|+.+++.|++|+.+||||||++++|||++++.+|+
T Consensus 469 IiFv~~K~~AD~LSSd~~l~g--i~~q~lHG--------~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~ 538 (629)
T KOG0336|consen 469 IIFVSRKVMADHLSSDFCLKG--ISSQSLHG--------NREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVY 538 (629)
T ss_pred EEEEechhhhhhccchhhhcc--cchhhccC--------ChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceee
Confidence 999999999999999888777 76666666 67899999999999999999999999999999999999999
Q ss_pred EeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHHH
Q 037446 546 CFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVE 583 (1165)
Q Consensus 546 ~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~~ 583 (1165)
+||.|.++..|+||+||+||.| +|..+.++..+...+.
T Consensus 539 NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a 577 (629)
T KOG0336|consen 539 NYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMA 577 (629)
T ss_pred ccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHH
Confidence 9999999999999999999999 5775555544443333
No 30
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.1e-40 Score=360.80 Aligned_cols=370 Identities=23% Similarity=0.293 Sum_probs=289.0
Q ss_pred hhccCCCCCCCCCCCCCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHH
Q 037446 65 FFGNLGPKPQGTEEFNEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVV 143 (1165)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lp 143 (1165)
....+....++...+.+..+|.+ ..+..+++.|...|+..||+||.. -++-.+.+++.|-.+-||||||++|.+|
T Consensus 152 vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQ----GlPvvLsGRDmIGIAfTGSGKTlvFvLP 227 (610)
T KOG0341|consen 152 VRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQ----GLPVVLSGRDMIGIAFTGSGKTLVFVLP 227 (610)
T ss_pred HHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeec----CcceEeecCceeeEEeecCCceEEEeHH
Confidence 33444555678888889999999 999999999999999999999842 2333344599999999999999999999
Q ss_pred HHHHH---------HhCCCCeEEEEecChhHHHHHHHHHHHHh------CCCCceEEEEeCCCChHHH-HhhcCCccEEE
Q 037446 144 IYNFF---------RWFPDGKIVFAAPSRPLVMQQIEACHNIV------GIPQEWTIDMTGQISPTKR-ASFWKTKRVFF 207 (1165)
Q Consensus 144 il~~L---------~~~~~~rvLILvPtr~La~Q~~~e~~kl~------g~~~~~v~~l~G~~~~~~~-~~l~~~~dIlV 207 (1165)
++.+. ....++..|||||+|+|+.|....+..++ |.|..+..+..|+.+..++ ..+..+.+|+|
T Consensus 228 ~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivV 307 (610)
T KOG0341|consen 228 VIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVV 307 (610)
T ss_pred HHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEE
Confidence 87654 22345679999999999999988877654 6788888888899987655 45667899999
Q ss_pred EcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcC-CCCCeEEEEccCCCCChHHHHHHHHhhccccc
Q 037446 208 VTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQHIIDNLYISTL 286 (1165)
Q Consensus 208 aTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~-~~~~riL~LSATP~~~~~~l~~Li~~L~is~i 286 (1165)
+||++|.+++.+..+.++-++|+++|||+|+.+. +|...++.+..+ ..++|+|+||||.+...+.+..
T Consensus 308 ATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDm-GFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAk---------- 376 (610)
T KOG0341|consen 308 ATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDM-GFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAK---------- 376 (610)
T ss_pred cCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhc-cchhhHHHHHHHHhhhhheeeeeccccHHHHHHHH----------
Confidence 9999999999999999999999999999999995 999999999874 4568999999999765332221
Q ss_pred cccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCC
Q 037446 287 EYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPP 366 (1165)
Q Consensus 287 ~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~ 366 (1165)
...+.++.+..+.....-..
T Consensus 377 ---------------SALVKPvtvNVGRAGAAsld--------------------------------------------- 396 (610)
T KOG0341|consen 377 ---------------SALVKPVTVNVGRAGAASLD--------------------------------------------- 396 (610)
T ss_pred ---------------hhcccceEEecccccccchh---------------------------------------------
Confidence 11223333332211100000
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHH
Q 037446 367 NLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSK 446 (1165)
Q Consensus 367 ~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~ 446 (1165)
..+.++ ......|+-.
T Consensus 397 ----------------------------------ViQevE------------------------------yVkqEaKiVy 412 (610)
T KOG0341|consen 397 ----------------------------------VIQEVE------------------------------YVKQEAKIVY 412 (610)
T ss_pred ----------------------------------HHHHHH------------------------------HHHhhhhhhh
Confidence 000000 0011457777
Q ss_pred HHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEE
Q 037446 447 MLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVI 526 (1165)
Q Consensus 447 LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VL 526 (1165)
|++-|.+ ...++||||..+..++.+.++|--.| +.++++|| |-.+++|...++.|+.|+.+||
T Consensus 413 lLeCLQK-------T~PpVLIFaEkK~DVD~IhEYLLlKG--VEavaIHG--------GKDQedR~~ai~afr~gkKDVL 475 (610)
T KOG0341|consen 413 LLECLQK-------TSPPVLIFAEKKADVDDIHEYLLLKG--VEAVAIHG--------GKDQEDRHYAIEAFRAGKKDVL 475 (610)
T ss_pred HHHHhcc-------CCCceEEEeccccChHHHHHHHHHcc--ceeEEeec--------CcchhHHHHHHHHHhcCCCceE
Confidence 7777754 46799999999999999999999889 88988887 7899999999999999999999
Q ss_pred EEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-CccceecChhH-HHHHHHHHHHH
Q 037446 527 VATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFKPEV-QFVELSIEQYV 590 (1165)
Q Consensus 527 VATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~-~~~~~~Ie~~l 590 (1165)
||||+++.|+|+|++.+|||||+|..+..|+||+||+||.|. |-..++.+... ..+...+..++
T Consensus 476 VATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL 541 (610)
T KOG0341|consen 476 VATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLL 541 (610)
T ss_pred EEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999995 77666666532 23333444444
No 31
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-39 Score=361.73 Aligned_cols=357 Identities=20% Similarity=0.289 Sum_probs=283.5
Q ss_pred CCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhC-------CCC
Q 037446 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF-------PDG 154 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~-------~~~ 154 (1165)
.+|++ +|++.|++++...||.+||.|| +.+++-++.++|++..|.||||||.+|++|+++.+... .+.
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQ----s~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~ 94 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQ----SSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGP 94 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhh----hcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccc
Confidence 68999 9999999999999999999999 77777777789999999999999999999999987432 233
Q ss_pred eEEEEecChhHHHHHHHHHHHHhCCC--CceEEEEeCCCChHH-HHhhcCCccEEEEcHHHHHHHHHcCc-cCCCCccEE
Q 037446 155 KIVFAAPSRPLVMQQIEACHNIVGIP--QEWTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQSGT-CLMKYLVCL 230 (1165)
Q Consensus 155 rvLILvPtr~La~Q~~~e~~kl~g~~--~~~v~~l~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l~~~~-~~l~~~~lV 230 (1165)
.++|||||++|+.|.+..+.++...- .+.++-+..+.+... +..+...++|+|+||+.+..++..+. ..+..+.++
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~L 174 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFL 174 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeE
Confidence 69999999999999999998875322 234444554554433 45666789999999999999998876 567889999
Q ss_pred EEcccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEE
Q 037446 231 VIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIE 309 (1165)
Q Consensus 231 VIDEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~ 309 (1165)
|+||||-++. ++|.+.++.+.. +++..|.++||||...++..+..++-. +|.+
T Consensus 175 VvDEADLlls-fGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~---------------------nPvi---- 228 (569)
T KOG0346|consen 175 VVDEADLLLS-FGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLH---------------------NPVI---- 228 (569)
T ss_pred Eechhhhhhh-cccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhcc---------------------CCeE----
Confidence 9999999998 699999999985 778899999999998887777776532 2211
Q ss_pred eccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHH
Q 037446 310 VEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHI 389 (1165)
Q Consensus 310 v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i 389 (1165)
..+.+.... .|
T Consensus 229 Lkl~e~el~------------------------------~~--------------------------------------- 239 (569)
T KOG0346|consen 229 LKLTEGELP------------------------------NP--------------------------------------- 239 (569)
T ss_pred EEeccccCC------------------------------Cc---------------------------------------
Confidence 111100000 00
Q ss_pred HHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEe
Q 037446 390 RRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469 (1165)
Q Consensus 390 ~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~ 469 (1165)
..+.+....+....|+..+..+|.-.+- .+|.|||+
T Consensus 240 ---------------------------------------dqL~Qy~v~cse~DKflllyallKL~LI-----~gKsliFV 275 (569)
T KOG0346|consen 240 ---------------------------------------DQLTQYQVKCSEEDKFLLLYALLKLRLI-----RGKSLIFV 275 (569)
T ss_pred ---------------------------------------ccceEEEEEeccchhHHHHHHHHHHHHh-----cCceEEEE
Confidence 0001111112234566555555543332 57999999
Q ss_pred CchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcc-------------------
Q 037446 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATS------------------- 530 (1165)
Q Consensus 470 ~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATd------------------- 530 (1165)
|+.+.|..|.-.|.+.| ++.+.+.| .|+...|..+++.|+.|-+++|||||
T Consensus 276 NtIdr~YrLkLfLeqFG--iksciLNs--------eLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~ 345 (569)
T KOG0346|consen 276 NTIDRCYRLKLFLEQFG--IKSCILNS--------ELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEK 345 (569)
T ss_pred echhhhHHHHHHHHHhC--cHhhhhcc--------cccccchhhHHHHhhCcceeEEEEccCccchhhhhcccccccccc
Confidence 99999999999999999 99888887 78999999999999999999999998
Q ss_pred ----------------cccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHHHHHHHHHHhc
Q 037446 531 ----------------IGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVELSIEQYVSR 592 (1165)
Q Consensus 531 ----------------a~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~~~~Ie~~l~~ 592 (1165)
-.+||||+..|.+|||||+|.++..|+||+||++|.| +|.++.++.|.+.+.+..|+..+..
T Consensus 346 ~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 346 NPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKD 424 (569)
T ss_pred CCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhh
Confidence 2468999999999999999999999999999999999 5998888888888877788777643
No 32
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.4e-37 Score=386.97 Aligned_cols=327 Identities=18% Similarity=0.177 Sum_probs=231.5
Q ss_pred cCCHHHHHHHHH-CCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhH
Q 037446 88 SLCHVQIDAEAA-KTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPL 165 (1165)
Q Consensus 88 ~L~~~Ll~~L~~-~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~L 165 (1165)
+....+...+.. .||. .+|++|.+++..++. +++|+.+|||+|||++|++|++.. .+.+|||+|+++|
T Consensus 443 pw~~~L~~~lk~~FG~~-----sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----~GiTLVISPLiSL 512 (1195)
T PLN03137 443 PWTKKLEVNNKKVFGNH-----SFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSL 512 (1195)
T ss_pred CchHHHHHHHHHHcCCC-----CCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----CCcEEEEeCHHHH
Confidence 444455444433 3444 688889999988886 899999999999999999999863 5789999999999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-------CCccEEEEcHHHHHHH---HHc-Ccc-CCCCccEEEEc
Q 037446 166 VMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-------KTKRVFFVTPQVLEKD---IQS-GTC-LMKYLVCLVID 233 (1165)
Q Consensus 166 a~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-------~~~dIlVaTpq~L~~~---l~~-~~~-~l~~~~lVVID 233 (1165)
+.+|...+... | +....+.|+....++..++ ...+|+|+||++|... +.. ..+ ....+.+||||
T Consensus 513 mqDQV~~L~~~-G---I~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVID 588 (1195)
T PLN03137 513 IQDQIMNLLQA-N---IPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVID 588 (1195)
T ss_pred HHHHHHHHHhC-C---CeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccC
Confidence 99887777652 4 3466777877755443222 3579999999998631 111 111 23458899999
Q ss_pred ccccccCc-cchHHHHHH---HHcCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEE
Q 037446 234 EAHRATGN-YAYCTAIRE---LMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIE 309 (1165)
Q Consensus 234 EAHrl~~~-~~~~~~l~~---L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~ 309 (1165)
|||++..+ +.|+..++. +.......++++||||....+. ..++..|.+..... +...+.++...+..
T Consensus 589 EAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~--eDI~~~L~l~~~~v-------fr~Sf~RpNL~y~V 659 (1195)
T PLN03137 589 EAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVK--EDVVQALGLVNCVV-------FRQSFNRPNLWYSV 659 (1195)
T ss_pred cchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHH--HHHHHHcCCCCcEE-------eecccCccceEEEE
Confidence 99999886 346666555 3445566789999999865542 12222222111000 00001111100000
Q ss_pred eccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHH
Q 037446 310 VEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHI 389 (1165)
Q Consensus 310 v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i 389 (1165)
+..
T Consensus 660 v~k----------------------------------------------------------------------------- 662 (1195)
T PLN03137 660 VPK----------------------------------------------------------------------------- 662 (1195)
T ss_pred ecc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEe
Q 037446 390 RRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469 (1165)
Q Consensus 390 ~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~ 469 (1165)
....+..+.+++... ..+.++||||
T Consensus 663 --------------------------------------------------~kk~le~L~~~I~~~-----~~~esgIIYC 687 (1195)
T PLN03137 663 --------------------------------------------------TKKCLEDIDKFIKEN-----HFDECGIIYC 687 (1195)
T ss_pred --------------------------------------------------chhHHHHHHHHHHhc-----ccCCCceeEe
Confidence 000112233333322 1256899999
Q ss_pred CchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEecc
Q 037446 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA 549 (1165)
Q Consensus 470 ~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~ 549 (1165)
.+++.|+.++..|...| +.+..+|| ||++++|..++++|..|+++|||||+++++|||+|+|++||||++
T Consensus 688 ~SRke~E~LAe~L~~~G--ika~~YHA--------GLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 688 LSRMDCEKVAERLQEFG--HKAAFYHG--------SMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred CchhHHHHHHHHHHHCC--CCeeeeeC--------CCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCC
Confidence 99999999999999988 77777776 899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCCCC-CccceecChhH
Q 037446 550 NVSPLRMIQRMGRTGRKHD-GRIPHIFKPEV 579 (1165)
Q Consensus 550 p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~ 579 (1165)
|.++..|+||+|||||.|. |.++++|....
T Consensus 758 PkSiEsYyQriGRAGRDG~~g~cILlys~~D 788 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 788 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCCceEEEEecHHH
Confidence 9999999999999999995 88888887643
No 33
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-38 Score=352.77 Aligned_cols=364 Identities=19% Similarity=0.222 Sum_probs=292.6
Q ss_pred CCCCCCCCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHh--
Q 037446 74 QGTEEFNEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW-- 150 (1165)
Q Consensus 74 ~~~~~~~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~-- 150 (1165)
.+..++.+..+|+. +.+..|..++....|..||+|| -..+.-.+.++++|-++.||||||-+|++|++-.+..
T Consensus 214 ~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq----~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~ 289 (731)
T KOG0339|consen 214 SGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQ----CQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQP 289 (731)
T ss_pred ccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCccc----ccccccccccccchheeeccCcchhHHHHHHHHHhcchh
Confidence 45567778889999 9999999999999999999998 3344445556999999999999999999999877632
Q ss_pred ----CCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHHHHHHcCccCCC
Q 037446 151 ----FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLEKDIQSGTCLMK 225 (1165)
Q Consensus 151 ----~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~~~l~~~~~~l~ 225 (1165)
+.++-.||+|||++|+.|++.+++++.+..++.++.++|+.+..++ ..+..++.|||+||++|.+++..+...+.
T Consensus 290 eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~ 369 (731)
T KOG0339|consen 290 ELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLS 369 (731)
T ss_pred hhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccce
Confidence 3345789999999999999999999877778889999988887655 45667899999999999999999999999
Q ss_pred CccEEEEcccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCc
Q 037446 226 YLVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRK 304 (1165)
Q Consensus 226 ~~~lVVIDEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~ 304 (1165)
++.|||||||++|... +|..+++.|.. +.+.+|+|+||||.....+.+.. . ++.. .
T Consensus 370 rvS~LV~DEadrmfdm-Gfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lar---d------------------~L~d-p 426 (731)
T KOG0339|consen 370 RVSYLVLDEADRMFDM-GFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLAR---D------------------ILSD-P 426 (731)
T ss_pred eeeEEEEechhhhhcc-ccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHH---H------------------HhcC-C
Confidence 9999999999999985 99999999985 67889999999998654332221 1 1111 1
Q ss_pred eEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHH
Q 037446 305 IELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI 384 (1165)
Q Consensus 305 ~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~ 384 (1165)
++.+...++.....+.+
T Consensus 427 VrvVqg~vgean~dITQ--------------------------------------------------------------- 443 (731)
T KOG0339|consen 427 VRVVQGEVGEANEDITQ--------------------------------------------------------------- 443 (731)
T ss_pred eeEEEeehhccccchhh---------------------------------------------------------------
Confidence 22222222211111000
Q ss_pred HHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCe
Q 037446 385 TLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSR 464 (1165)
Q Consensus 385 ~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~k 464 (1165)
..........|+.+|+..|.++.. ..+
T Consensus 444 ------------------------------------------------~V~V~~s~~~Kl~wl~~~L~~f~S-----~gk 470 (731)
T KOG0339|consen 444 ------------------------------------------------TVSVCPSEEKKLNWLLRHLVEFSS-----EGK 470 (731)
T ss_pred ------------------------------------------------eeeeccCcHHHHHHHHHHhhhhcc-----CCc
Confidence 001112335688888888877643 679
Q ss_pred EEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEE
Q 037446 465 VIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV 544 (1165)
Q Consensus 465 vIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~V 544 (1165)
+|||+.-...++.++..|+..+ +++..+|| .|.|.+|.+++.+|+.+...|||+||++++|+|||++..|
T Consensus 471 vlifVTKk~~~e~i~a~Lklk~--~~v~llhg--------dkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTV 540 (731)
T KOG0339|consen 471 VLIFVTKKADAEEIAANLKLKG--FNVSLLHG--------DKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTV 540 (731)
T ss_pred EEEEEeccCCHHHHHHHhcccc--ceeeeecC--------chhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcccccee
Confidence 9999999999999999999988 88888887 7899999999999999999999999999999999999999
Q ss_pred EEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHHHHHHHHHH
Q 037446 545 ICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 545 I~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
|+||.-.++..|.||+||+||.| .|..+.++++....+...+-..+
T Consensus 541 vnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnL 587 (731)
T KOG0339|consen 541 VNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNL 587 (731)
T ss_pred ecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHH
Confidence 99999999999999999999999 58888888876655554444444
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.1e-37 Score=375.84 Aligned_cols=357 Identities=19% Similarity=0.211 Sum_probs=243.6
Q ss_pred CChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEE
Q 037446 109 PVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDM 187 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l 187 (1165)
++|++|.+++..++. +++++.+|||+|||++|++|++.. .+.+|||+|+++|+.|+.+.+... |. ....+
T Consensus 11 ~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----~~~~lVi~P~~~L~~dq~~~l~~~-gi---~~~~l 81 (470)
T TIGR00614 11 SFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----DGITLVISPLISLMEDQVLQLKAS-GI---PATFL 81 (470)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----CCcEEEEecHHHHHHHHHHHHHHc-CC---cEEEE
Confidence 567788888888876 899999999999999999998753 578999999999999999999863 44 35666
Q ss_pred eCCCChHHHHhh-----cCCccEEEEcHHHHHHHH-HcCcc-CCCCccEEEEcccccccCc-cchHHHHHHH---HcCCC
Q 037446 188 TGQISPTKRASF-----WKTKRVFFVTPQVLEKDI-QSGTC-LMKYLVCLVIDEAHRATGN-YAYCTAIREL---MSVPV 256 (1165)
Q Consensus 188 ~G~~~~~~~~~l-----~~~~dIlVaTpq~L~~~l-~~~~~-~l~~~~lVVIDEAHrl~~~-~~~~~~l~~L---~~~~~ 256 (1165)
.|+....++..+ ....+|+++||+++.... ....+ ...++++|||||||++..+ +.|...+..+ ....+
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~ 161 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFP 161 (470)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcC
Confidence 777665543322 234799999999986432 11122 5678999999999999875 3455555443 44456
Q ss_pred CCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhh
Q 037446 257 QLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSA 336 (1165)
Q Consensus 257 ~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~ 336 (1165)
..++++||||+.+... ..++..+.+....+. ...+..+.......
T Consensus 162 ~~~~l~lTAT~~~~~~--~di~~~l~l~~~~~~-------~~s~~r~nl~~~v~-------------------------- 206 (470)
T TIGR00614 162 NVPIMALTATASPSVR--EDILRQLNLKNPQIF-------CTSFDRPNLYYEVR-------------------------- 206 (470)
T ss_pred CCceEEEecCCCHHHH--HHHHHHcCCCCCcEE-------eCCCCCCCcEEEEE--------------------------
Confidence 7789999999975431 223322221110000 00000000000000
Q ss_pred hcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchh
Q 037446 337 IGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFAR 416 (1165)
Q Consensus 337 ~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ 416 (1165)
T Consensus 207 -------------------------------------------------------------------------------- 206 (470)
T TIGR00614 207 -------------------------------------------------------------------------------- 206 (470)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeec
Q 037446 417 FMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIG 496 (1165)
Q Consensus 417 ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G 496 (1165)
......+..+.+.+.+.. .+.++||||++++.++.++..|...| +.+..+||
T Consensus 207 ---------------------~~~~~~~~~l~~~l~~~~-----~~~~~IIF~~s~~~~e~la~~L~~~g--~~~~~~H~ 258 (470)
T TIGR00614 207 ---------------------RKTPKILEDLLRFIRKEF-----KGKSGIIYCPSRKKSEQVTASLQNLG--IAAGAYHA 258 (470)
T ss_pred ---------------------eCCccHHHHHHHHHHHhc-----CCCceEEEECcHHHHHHHHHHHHhcC--CCeeEeeC
Confidence 000012233444443321 36678999999999999999999988 77777766
Q ss_pred ccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-Cccceec
Q 037446 497 QSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIF 575 (1165)
Q Consensus 497 ~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~ 575 (1165)
+|++++|..+++.|++|+++|||||+++++|||+|++++||++++|.++..|+||+|||||.|. |..++++
T Consensus 259 --------~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~ 330 (470)
T TIGR00614 259 --------GLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFY 330 (470)
T ss_pred --------CCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEe
Confidence 8999999999999999999999999999999999999999999999999999999999999995 7788888
Q ss_pred ChhHHHHHHHHHHHHhcCCcccc--cccccccHHHhhcCHHHHHHHHHHcCCC
Q 037446 576 KPEVQFVELSIEQYVSRGKKVKD--DHAITTPIFKEKLTAAETDLIAKYFHPT 626 (1165)
Q Consensus 576 ~~d~~~~~~~Ie~~l~~~~~l~~--~~~~~~~~f~~~l~~~e~~~l~~~f~~~ 626 (1165)
.+........+-.....+..... ...... .+......+.++.+..||++.
T Consensus 331 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~crr~~l~~~f~~~ 382 (470)
T TIGR00614 331 APADINRLRRLLMEEPDGQQRTYKLKLYEMM-EYCLNSSTCRRLILLSHFGEK 382 (470)
T ss_pred chhHHHHHHHHHhcCCchhHHHHHHHHHHHH-HHHhccccCHHHHHHHHcCCc
Confidence 77554322222111111110000 000011 111145667788999999874
No 35
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.2e-38 Score=340.63 Aligned_cols=362 Identities=17% Similarity=0.218 Sum_probs=270.3
Q ss_pred CCCCCCCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc---CCeEEEcCCCchHHHHHHHHHHHHHHh
Q 037446 75 GTEEFNEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF---SNTLVALPTGLGKTLIAAVVIYNFFRW 150 (1165)
Q Consensus 75 ~~~~~~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~---rnvIl~a~TGsGKTL~a~lpil~~L~~ 150 (1165)
+..+.+...+|++ +|.|.|+++++.++|..|+.|| ..++..++. +|.|..+..|+|||.+|.+.|+.++..
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQ-----e~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~ 156 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQ-----ETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP 156 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHH-----HhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc
Confidence 4455667789999 9999999999999999999987 556666665 799999999999999999999988743
Q ss_pred C-CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHc-CccCCCCcc
Q 037446 151 F-PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS-GTCLMKYLV 228 (1165)
Q Consensus 151 ~-~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~-~~~~l~~~~ 228 (1165)
. ..+.+++|+||++|+.|..+.+.+..++..+......-+... .+. -.-...|+|+||+++.++... ..+.+..++
T Consensus 157 ~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~-~rG-~~i~eqIviGTPGtv~Dlm~klk~id~~kik 234 (477)
T KOG0332|consen 157 DVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKA-KRG-NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIK 234 (477)
T ss_pred cccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccc-ccC-CcchhheeeCCCccHHHHHHHHHhhChhhce
Confidence 2 335789999999999999999999766654333322222211 000 001368999999999998876 778889999
Q ss_pred EEEEcccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEE
Q 037446 229 CLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIEL 307 (1165)
Q Consensus 229 lVVIDEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~ 307 (1165)
++|+|||+.+.+..+|......|+. ++...|+|++|||-...+..+...+ +.++.+
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~ki---------------------vpn~n~-- 291 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKI---------------------VPNANV-- 291 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHh---------------------cCCCce--
Confidence 9999999999998788887777765 5668999999999865443222211 111111
Q ss_pred EEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHH
Q 037446 308 IEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY 387 (1165)
Q Consensus 308 i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~ 387 (1165)
+.+... .. .+..-..|.
T Consensus 292 i~Lk~e--el--------------------~L~~IkQly----------------------------------------- 308 (477)
T KOG0332|consen 292 IILKRE--EL--------------------ALDNIKQLY----------------------------------------- 308 (477)
T ss_pred eeeehh--hc--------------------cccchhhhe-----------------------------------------
Confidence 111000 00 000000000
Q ss_pred HHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEE
Q 037446 388 HIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467 (1165)
Q Consensus 388 ~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIV 467 (1165)
+.......|+.+|.++. ... .-+..||
T Consensus 309 -----------------------------------------------v~C~~~~~K~~~l~~ly-g~~-----tigqsiI 335 (477)
T KOG0332|consen 309 -----------------------------------------------VLCACRDDKYQALVNLY-GLL-----TIGQSII 335 (477)
T ss_pred -----------------------------------------------eeccchhhHHHHHHHHH-hhh-----hhhheEE
Confidence 11122346777777733 322 3679999
Q ss_pred EeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEe
Q 037446 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547 (1165)
Q Consensus 468 F~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~ 547 (1165)
||.++..|.+|+..|...| ..+..+|| .|+..+|.+++++|+.|..+|||+|++++||||++.|+.||||
T Consensus 336 Fc~tk~ta~~l~~~m~~~G--h~V~~l~G--------~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNy 405 (477)
T KOG0332|consen 336 FCHTKATAMWLYEEMRAEG--HQVSLLHG--------DLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNY 405 (477)
T ss_pred EEeehhhHHHHHHHHHhcC--ceeEEeec--------cchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEec
Confidence 9999999999999999999 77777777 7999999999999999999999999999999999999999999
Q ss_pred ccC------CCHHHHHHHHhhcCCCCC-CccceecC-hhHHHHHHHHHHHHhc
Q 037446 548 DAN------VSPLRMIQRMGRTGRKHD-GRIPHIFK-PEVQFVELSIEQYVSR 592 (1165)
Q Consensus 548 D~p------~S~~~yiQriGRagR~Gq-Gkiv~v~~-~d~~~~~~~Ie~~l~~ 592 (1165)
|.| ..++.|+||+||+||.|. |-.+-++. .+...+...|++++..
T Consensus 406 dlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~ 458 (477)
T KOG0332|consen 406 DLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNM 458 (477)
T ss_pred CCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhh
Confidence 999 578999999999999995 76555554 4555566788888743
No 36
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-36 Score=342.72 Aligned_cols=376 Identities=21% Similarity=0.259 Sum_probs=243.9
Q ss_pred CCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc----------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCC--eE
Q 037446 89 LCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF----------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDG--KI 156 (1165)
Q Consensus 89 L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~----------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~--rv 156 (1165)
|...+.+.+..+++....++ |.+++.+++. ++++|.+|||||||++|++||.+.+...+-. |+
T Consensus 144 lea~~~q~l~k~~is~~FPV-----Q~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRa 218 (620)
T KOG0350|consen 144 LEATIDQLLVKMAISRLFPV-----QYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRA 218 (620)
T ss_pred HHHHHHHHHHHhhcccccch-----HHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEE
Confidence 33444455777777654444 5777777753 6899999999999999999999998665443 79
Q ss_pred EEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH-HhhcC-C----ccEEEEcHHHHHHHHHc-CccCCCCccE
Q 037446 157 VFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR-ASFWK-T----KRVFFVTPQVLEKDIQS-GTCLMKYLVC 229 (1165)
Q Consensus 157 LILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~-~~l~~-~----~dIlVaTpq~L~~~l~~-~~~~l~~~~l 229 (1165)
|||+||++|+.|.+++|.+|....+..|+.+.|..+-... ..+.. . .||+|+||++|.+++.. ..+.+.+++|
T Consensus 219 vVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~Lrf 298 (620)
T KOG0350|consen 219 VVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRF 298 (620)
T ss_pred EEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceE
Confidence 9999999999999999999988777888888888775432 22222 2 49999999999999984 7788999999
Q ss_pred EEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCCCCChHHHHHHHHhhc-cccccccCCchhhhhhhhccCceEEE
Q 037446 230 LVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY-ISTLEYRNESDQDVSSYVHNRKIELI 308 (1165)
Q Consensus 230 VVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~-is~i~~~~~~~~~i~~y~~~~~~~~i 308 (1165)
+|||||||+++. .|..++-.++.+......+.+... ++.... +....+ . ++...+..
T Consensus 299 LVIDEADRll~q-sfQ~Wl~~v~~~~~~~k~~~~~~n----------ii~~~~~~~pt~~-~----e~~t~~~~------ 356 (620)
T KOG0350|consen 299 LVIDEADRLLDQ-SFQEWLDTVMSLCKTMKRVACLDN----------IIRQRQAPQPTVL-S----ELLTKLGK------ 356 (620)
T ss_pred EEechHHHHHHH-HHHHHHHHHHHHhCCchhhcChhh----------hhhhcccCCchhh-H----HHHhhcCC------
Confidence 999999999984 888888887754333222222111 111000 000000 0 00000000
Q ss_pred EeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHH
Q 037446 309 EVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYH 388 (1165)
Q Consensus 309 ~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~ 388 (1165)
.+..++..+. ...+.+.+
T Consensus 357 ----------~~~~l~kL~~----------------------------satLsqdP------------------------ 374 (620)
T KOG0350|consen 357 ----------LYPPLWKLVF----------------------------SATLSQDP------------------------ 374 (620)
T ss_pred ----------cCchhHhhhc----------------------------chhhhcCh------------------------
Confidence 0000000000 00000000
Q ss_pred HHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEE
Q 037446 389 IRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIF 468 (1165)
Q Consensus 389 i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF 468 (1165)
. ....+.-.... .............+...+..........-|...+..+|... +..++|+|
T Consensus 375 --~---------Kl~~l~l~~Pr--l~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~------k~~r~lcf 435 (620)
T KOG0350|consen 375 --S---------KLKDLTLHIPR--LFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN------KLNRTLCF 435 (620)
T ss_pred --H---------HHhhhhcCCCc--eEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh------hcceEEEE
Confidence 0 00000000000 00000000000111111222222222334556667777543 57899999
Q ss_pred eCchHHHHHHHHHHH-hcC-CCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEE
Q 037446 469 SNFRGSVRDIMNALA-TIG-DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546 (1165)
Q Consensus 469 ~~sr~~ae~L~~~L~-~~g-~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~ 546 (1165)
+++.+.+..++..|+ ..+ ...++..|+| +++.+.|.+++.+|+.|++++|||+|+++||+|+-++++||+
T Consensus 436 ~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~--------~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN 507 (620)
T KOG0350|consen 436 VNSVSSANRLAHVLKVEFCSDNFKVSEFTG--------QLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN 507 (620)
T ss_pred ecchHHHHHHHHHHHHHhccccchhhhhhh--------hhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee
Confidence 999999999999998 332 1244444444 789999999999999999999999999999999999999999
Q ss_pred eccCCCHHHHHHHHhhcCCCCC-CccceecChhHH
Q 037446 547 FDANVSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQ 580 (1165)
Q Consensus 547 ~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~ 580 (1165)
||+|.+...|+||+||++|.|+ |.++.++.....
T Consensus 508 Yd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 508 YDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEK 542 (620)
T ss_pred cCCCchhhHHHHhhcccccccCCceEEEeeccccc
Confidence 9999999999999999999997 888888776543
No 37
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=8.2e-36 Score=368.92 Aligned_cols=354 Identities=20% Similarity=0.270 Sum_probs=243.7
Q ss_pred CChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEE
Q 037446 109 PVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDM 187 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l 187 (1165)
++|++|.+++..++. +++++.+|||+|||++|++|++.. .+.+|||+|+++|+.|+.+.+... |. ....+
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----~g~tlVisPl~sL~~dqv~~l~~~-gi---~~~~~ 95 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----DGLTLVVSPLISLMKDQVDQLLAN-GV---AAACL 95 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----CCCEEEEecHHHHHHHHHHHHHHc-CC---cEEEE
Confidence 567778888888876 899999999999999999998753 568999999999999999999874 43 34556
Q ss_pred eCCCChHHHHhh-----cCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCc-cchHHHHHHH---HcCCCCC
Q 037446 188 TGQISPTKRASF-----WKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN-YAYCTAIREL---MSVPVQL 258 (1165)
Q Consensus 188 ~G~~~~~~~~~l-----~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~-~~~~~~l~~L---~~~~~~~ 258 (1165)
.++......... ....+++++||++|........+...++++|||||||++..+ +.|...++.+ ....+..
T Consensus 96 ~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~ 175 (607)
T PRK11057 96 NSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTL 175 (607)
T ss_pred cCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCC
Confidence 666555443222 134789999999997533323344567899999999999875 3455544443 4445667
Q ss_pred eEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhc
Q 037446 259 RILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIG 338 (1165)
Q Consensus 259 riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~ 338 (1165)
++++||||+..... ..++..+.+.. +. ........
T Consensus 176 ~~v~lTAT~~~~~~--~di~~~l~l~~-----------------~~--~~~~~~~r------------------------ 210 (607)
T PRK11057 176 PFMALTATADDTTR--QDIVRLLGLND-----------------PL--IQISSFDR------------------------ 210 (607)
T ss_pred cEEEEecCCChhHH--HHHHHHhCCCC-----------------eE--EEECCCCC------------------------
Confidence 89999999976532 12222221110 00 00000000
Q ss_pred ccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcc
Q 037446 339 LLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFM 418 (1165)
Q Consensus 339 vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll 418 (1165)
+++. + . +
T Consensus 211 ---------------------------~nl~-----------------~----------------------------~-v 217 (607)
T PRK11057 211 ---------------------------PNIR-----------------Y----------------------------T-L 217 (607)
T ss_pred ---------------------------Ccce-----------------e----------------------------e-e
Confidence 0000 0 0 0
Q ss_pred cchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeeccc
Q 037446 419 SKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQS 498 (1165)
Q Consensus 419 ~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~ 498 (1165)
.....++..++..+.. ..+.++||||++++.|+.++..|...| +.+..+||
T Consensus 218 -------------------~~~~~~~~~l~~~l~~------~~~~~~IIFc~tr~~~e~la~~L~~~g--~~v~~~Ha-- 268 (607)
T PRK11057 218 -------------------VEKFKPLDQLMRYVQE------QRGKSGIIYCNSRAKVEDTAARLQSRG--ISAAAYHA-- 268 (607)
T ss_pred -------------------eeccchHHHHHHHHHh------cCCCCEEEEECcHHHHHHHHHHHHhCC--CCEEEecC--
Confidence 0001122334444432 246799999999999999999999988 77777765
Q ss_pred ccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-CccceecCh
Q 037446 499 SGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFKP 577 (1165)
Q Consensus 499 ~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~ 577 (1165)
+|++++|..+++.|+.|+++|||||+++++|||+|+|++||+||+|.|...|+||+|||||.|. |..++++.+
T Consensus 269 ------~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~ 342 (607)
T PRK11057 269 ------GLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDP 342 (607)
T ss_pred ------CCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCH
Confidence 8999999999999999999999999999999999999999999999999999999999999994 778888877
Q ss_pred hHHHHHHHHHHHHhcCCc-----ccccccccccHHHhhcCHHHHHHHHHHcCCCCC
Q 037446 578 EVQFVELSIEQYVSRGKK-----VKDDHAITTPIFKEKLTAAETDLIAKYFHPTSD 628 (1165)
Q Consensus 578 d~~~~~~~Ie~~l~~~~~-----l~~~~~~~~~~f~~~l~~~e~~~l~~~f~~~k~ 628 (1165)
..... ++.++..... +..........|. +...+.++.+..||++...
T Consensus 343 ~d~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~Crr~~~l~yf~e~~~ 394 (607)
T PRK11057 343 ADMAW---LRRCLEEKPAGQQQDIERHKLNAMGAFA-EAQTCRRLVLLNYFGEGRQ 394 (607)
T ss_pred HHHHH---HHHHHhcCCcHHHHHHHHHHHHHHHHHH-hcccCHHHHHHHHhCCCCC
Confidence 65422 2222221110 0000111112233 4456888999999998643
No 38
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.2e-36 Score=348.45 Aligned_cols=357 Identities=20% Similarity=0.279 Sum_probs=276.9
Q ss_pred CCCCCCCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhh-cCCeEEEcCCCchHHHHHHHHHHHHHHh-C
Q 037446 75 GTEEFNEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRW-F 151 (1165)
Q Consensus 75 ~~~~~~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll-~rnvIl~a~TGsGKTL~a~lpil~~L~~-~ 151 (1165)
++..++....|++ .|...++..|...+|..||+|| .+++..++ +-+.||.+..|+|||++|.+.+++-+.. .
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQ-----aaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~ 91 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQ-----AAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS 91 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchh-----hhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc
Confidence 3344556668999 9999999999999999999998 34444444 4799999999999999999988877643 3
Q ss_pred CCCeEEEEecChhHHHHHHHHHHHHhC-CCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEE
Q 037446 152 PDGKIVFAAPSRPLVMQQIEACHNIVG-IPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230 (1165)
Q Consensus 152 ~~~rvLILvPtr~La~Q~~~e~~kl~g-~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lV 230 (1165)
....++||+|||+|+.|+...+.+++. +.+..+.++.||+.......-++.++|+|+||+++..++..+.+....++++
T Consensus 92 ~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlf 171 (980)
T KOG4284|consen 92 SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLF 171 (980)
T ss_pred CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEE
Confidence 345799999999999999999999763 4577889999999877666666889999999999999999999999999999
Q ss_pred EEcccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEE
Q 037446 231 VIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIE 309 (1165)
Q Consensus 231 VIDEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~ 309 (1165)
|+|||+.+....+|...+..|.. ++..+|++++|||-+.+. .+++ .+|+.++.
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nL---dn~L------------------sk~mrdp~----- 225 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNL---DNLL------------------SKFMRDPA----- 225 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhH---HHHH------------------HHHhcccc-----
Confidence 99999999987789999988875 788899999999986552 2222 23333221
Q ss_pred eccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHH
Q 037446 310 VEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHI 389 (1165)
Q Consensus 310 v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i 389 (1165)
+.+++..+ - . +
T Consensus 226 ---------------------lVr~n~~d------~------~---------------------------------L--- 236 (980)
T KOG4284|consen 226 ---------------------LVRFNADD------V------Q---------------------------------L--- 236 (980)
T ss_pred ---------------------eeecccCC------c------e---------------------------------e---
Confidence 11111100 0 0 0
Q ss_pred HHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEe
Q 037446 390 RRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469 (1165)
Q Consensus 390 ~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~ 469 (1165)
.|+++++..+ .+.+...+.. .-|+..|-+++..+ +...+||||
T Consensus 237 ------~GikQyv~~~------------~s~nnsveem-------------rlklq~L~~vf~~i------py~QAlVF~ 279 (980)
T KOG4284|consen 237 ------FGIKQYVVAK------------CSPNNSVEEM-------------RLKLQKLTHVFKSI------PYVQALVFC 279 (980)
T ss_pred ------echhheeeec------------cCCcchHHHH-------------HHHHHHHHHHHhhC------chHHHHhhh
Confidence 1111111110 0001111111 12455555555433 568999999
Q ss_pred CchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEecc
Q 037446 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA 549 (1165)
Q Consensus 470 ~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~ 549 (1165)
+....|+-++.+|...| +.+..+.| .|++.+|..+++.++.-.++|||+||..+||||-+.|++|||+|+
T Consensus 280 ~~~sra~~~a~~L~ssG--~d~~~ISg--------aM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~ 349 (980)
T KOG4284|consen 280 DQISRAEPIATHLKSSG--LDVTFISG--------AMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDA 349 (980)
T ss_pred hhhhhhhHHHHHhhccC--CCeEEecc--------ccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCC
Confidence 99999999999999999 88888877 799999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCCCC-CccceecChh
Q 037446 550 NVSPLRMIQRMGRTGRKHD-GRIPHIFKPE 578 (1165)
Q Consensus 550 p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d 578 (1165)
|.+...|.||||||||.|. |-.++++..+
T Consensus 350 p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 350 PADEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred CcchHHHHHHhhhcccccccceeEEEeccc
Confidence 9999999999999999994 8777666543
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.9e-35 Score=362.50 Aligned_cols=353 Identities=21% Similarity=0.268 Sum_probs=246.1
Q ss_pred CChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEE
Q 037446 109 PVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDM 187 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l 187 (1165)
++|++|.+++..++. +++++++|||+|||++|++|++. ..+.+|||+|+++|+.|+.+.++.. |. .+..+
T Consensus 13 ~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~-----~~g~~lVisPl~sL~~dq~~~l~~~-gi---~~~~~ 83 (591)
T TIGR01389 13 DFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL-----LKGLTVVISPLISLMKDQVDQLRAA-GV---AAAYL 83 (591)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH-----cCCcEEEEcCCHHHHHHHHHHHHHc-CC---cEEEE
Confidence 578889999998886 89999999999999999999875 2568999999999999999999874 43 36677
Q ss_pred eCCCChHHHHhh-----cCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCc-cchHHHHHHHH---cCCCCC
Q 037446 188 TGQISPTKRASF-----WKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN-YAYCTAIRELM---SVPVQL 258 (1165)
Q Consensus 188 ~G~~~~~~~~~l-----~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~-~~~~~~l~~L~---~~~~~~ 258 (1165)
.++....+...+ ....+|+++||++|........+...++++|||||||++..+ +.|...+..+. ...+..
T Consensus 84 ~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~ 163 (591)
T TIGR01389 84 NSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQV 163 (591)
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCC
Confidence 777776554332 235799999999997654444456678999999999999865 34655555543 333445
Q ss_pred eEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhc
Q 037446 259 RILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIG 338 (1165)
Q Consensus 259 riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~ 338 (1165)
++++||||+..... ..+...+.+..... +...+..+.....
T Consensus 164 ~vi~lTAT~~~~~~--~~i~~~l~~~~~~~-------~~~~~~r~nl~~~------------------------------ 204 (591)
T TIGR01389 164 PRIALTATADAETR--QDIRELLRLADANE-------FITSFDRPNLRFS------------------------------ 204 (591)
T ss_pred CEEEEEeCCCHHHH--HHHHHHcCCCCCCe-------EecCCCCCCcEEE------------------------------
Confidence 69999999875432 22222222110000 0000000000000
Q ss_pred ccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcc
Q 037446 339 LLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFM 418 (1165)
Q Consensus 339 vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll 418 (1165)
T Consensus 205 -------------------------------------------------------------------------------- 204 (591)
T TIGR01389 205 -------------------------------------------------------------------------------- 204 (591)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeeccc
Q 037446 419 SKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQS 498 (1165)
Q Consensus 419 ~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~ 498 (1165)
......+...+.+.|..+ .+.++||||++++.++.+++.|...| +++..+||
T Consensus 205 ------------------v~~~~~~~~~l~~~l~~~------~~~~~IIf~~sr~~~e~la~~L~~~g--~~~~~~H~-- 256 (591)
T TIGR01389 205 ------------------VVKKNNKQKFLLDYLKKH------RGQSGIIYASSRKKVEELAERLESQG--ISALAYHA-- 256 (591)
T ss_pred ------------------EEeCCCHHHHHHHHHHhc------CCCCEEEEECcHHHHHHHHHHHHhCC--CCEEEEEC--
Confidence 000012334455555432 25789999999999999999999888 77766665
Q ss_pred ccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-CccceecCh
Q 037446 499 SGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFKP 577 (1165)
Q Consensus 499 ~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~ 577 (1165)
+|+.++|..+++.|.+|+++|||||+++++|||+|++++||+|++|.|...|+|++|||||.|+ +..++++.+
T Consensus 257 ------~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~ 330 (591)
T TIGR01389 257 ------GLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSP 330 (591)
T ss_pred ------CCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCH
Confidence 8999999999999999999999999999999999999999999999999999999999999994 777788876
Q ss_pred hHHHHHHHHHHHHhcCCcc------cccccccccHHHhhcCHHHHHHHHHHcCCCC
Q 037446 578 EVQFVELSIEQYVSRGKKV------KDDHAITTPIFKEKLTAAETDLIAKYFHPTS 627 (1165)
Q Consensus 578 d~~~~~~~Ie~~l~~~~~l------~~~~~~~~~~f~~~l~~~e~~~l~~~f~~~k 627 (1165)
..... ++.++...... ..........|. ....+.+..+..||++..
T Consensus 331 ~d~~~---~~~~i~~~~~~~~~~~~~~~~l~~~~~~~-~~~~c~r~~~~~~f~~~~ 382 (591)
T TIGR01389 331 ADIAL---LKRRIEQSEADDDYKQIEREKLRAMIAYC-ETQTCRRAYILRYFGENE 382 (591)
T ss_pred HHHHH---HHHHHhccCCcHHHHHHHHHHHHHHHHHH-cccccHhHHHHHhcCCCC
Confidence 55422 22222221110 000000011222 335677788889998753
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=8.3e-35 Score=368.27 Aligned_cols=364 Identities=20% Similarity=0.255 Sum_probs=250.0
Q ss_pred CCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHH-hh-cCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEE
Q 037446 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKT-AL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~-ll-~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLIL 159 (1165)
+.|++ +|++.+++.+...||.. |+++|.+++.. +. ++|+|+++|||+|||++|.++++..+. +++++|||
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~-----l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i 73 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEE-----LYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYI 73 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCc-----CCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEE
Confidence 35777 89999999999999875 55677888876 33 489999999999999999999998875 46789999
Q ss_pred ecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 160 APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 160 vPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
+|+++|+.|+.+.++++.. .+..+..++|+..... .....++|+|+||+++..++.++...+.++++|||||+|.+.
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~--~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~ 150 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRD--EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLID 150 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCccc--cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccC
Confidence 9999999999999997533 2466888888876433 233568999999999999888765567889999999999997
Q ss_pred Ccc---chHHHHHHHHcCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhH
Q 037446 240 GNY---AYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316 (1165)
Q Consensus 240 ~~~---~~~~~l~~L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~ 316 (1165)
+.. .+...+.+++......|+++||||+++.. ++...+ .... +.... ++......+.....
T Consensus 151 d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~-~la~wl---~~~~--~~~~~---------rpv~l~~~v~~~~~- 214 (737)
T PRK02362 151 SANRGPTLEVTLAKLRRLNPDLQVVALSATIGNAD-ELADWL---DAEL--VDSEW---------RPIDLREGVFYGGA- 214 (737)
T ss_pred CCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHH-HHHHHh---CCCc--ccCCC---------CCCCCeeeEecCCe-
Confidence 631 13344555666667789999999997642 233222 1100 00000 00000000000000
Q ss_pred HHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhC
Q 037446 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSH 396 (1165)
Q Consensus 317 ~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~ 396 (1165)
+ . +.
T Consensus 215 -------------------------------~---~-------~~----------------------------------- 218 (737)
T PRK02362 215 -------------------------------I---H-------FD----------------------------------- 218 (737)
T ss_pred -------------------------------e---c-------cc-----------------------------------
Confidence 0 0 00
Q ss_pred CchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHH
Q 037446 397 GIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVR 476 (1165)
Q Consensus 397 g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae 476 (1165)
. .... + ........+..+.+.+ . .+.++||||++++.|+
T Consensus 219 ~---------------~~~~-~-----------------~~~~~~~~~~~~~~~~----~----~~~~~LVF~~sr~~~~ 257 (737)
T PRK02362 219 D---------------SQRE-V-----------------EVPSKDDTLNLVLDTL----E----EGGQCLVFVSSRRNAE 257 (737)
T ss_pred c---------------cccc-C-----------------CCccchHHHHHHHHHH----H----cCCCeEEEEeCHHHHH
Confidence 0 0000 0 0000011222222222 2 4679999999999999
Q ss_pred HHHHHHHhcCCC-c-------------------------cceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcc
Q 037446 477 DIMNALATIGDL-V-------------------------KATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATS 530 (1165)
Q Consensus 477 ~L~~~L~~~g~~-i-------------------------~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATd 530 (1165)
.++..|...... . .........++.+|+||++.+|..+++.|++|.++|||||+
T Consensus 258 ~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~ 337 (737)
T PRK02362 258 GFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTP 337 (737)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEech
Confidence 999888654210 0 00000112345789999999999999999999999999999
Q ss_pred cccccccccCCCEEEE----ec-----cCCCHHHHHHHHhhcCCCCC---CccceecChhHHHHHHHHHHHH
Q 037446 531 IGEEGLDIMEVDLVIC----FD-----ANVSPLRMIQRMGRTGRKHD---GRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 531 a~~eGLDIp~vd~VI~----~D-----~p~S~~~yiQriGRagR~Gq---Gkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
++++|||+|++++||+ || .|.+...|+||+|||||.|. |.+++++..... .....++++
T Consensus 338 tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~-~~~~~~~~l 408 (737)
T PRK02362 338 TLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDE-LDELFERYI 408 (737)
T ss_pred hhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchh-HHHHHHHHH
Confidence 9999999999999997 76 68999999999999999994 777777765322 223344555
No 41
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=4.6e-34 Score=360.80 Aligned_cols=406 Identities=17% Similarity=0.217 Sum_probs=264.4
Q ss_pred CChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHHH-hCCCCeEEEEecChhHHHHHHHHHHHHhCCCCc
Q 037446 109 PVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFFR-WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L~-~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~ 182 (1165)
+||+||.++++|+.. .++|++++||+|||++++..+..+.. ....+++|||||. +|+.||.++|.+|+. ..
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~l 245 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--VL 245 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--CC
Confidence 699999999999963 68999999999999998877765543 2345689999999 999999999999964 45
Q ss_pred eEEEEeCCCChHHH--H--hhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCC
Q 037446 183 WTIDMTGQISPTKR--A--SFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL 258 (1165)
Q Consensus 183 ~v~~l~G~~~~~~~--~--~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~ 258 (1165)
.++.++|....... . ......+|+|+||+++..... .+....|++|||||||++++. .....+.+..+...
T Consensus 246 ~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L~a~- 320 (1033)
T PLN03142 246 RAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLFSTN- 320 (1033)
T ss_pred ceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHHHhhcC-
Confidence 67777776543221 1 112457999999999987543 334456999999999999983 33344444444444
Q ss_pred eEEEEccCC-CCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhh
Q 037446 259 RILALTATP-GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337 (1165)
Q Consensus 259 riL~LSATP-~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~ 337 (1165)
+.|+||||| .++..+++.+++.|.+..+.. ...+..++... ...........++..+.|++.|..+.
T Consensus 321 ~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s----~~~F~~~f~~~--------~~~~~~e~i~~L~~~L~pf~LRR~Ks 388 (1033)
T PLN03142 321 YRLLITGTPLQNNLHELWALLNFLLPEIFSS----AETFDEWFQIS--------GENDQQEVVQQLHKVLRPFLLRRLKS 388 (1033)
T ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCCcCCC----HHHHHHHHccc--------cccchHHHHHHHHHHhhHHHhhhhHH
Confidence 459999999 566688888888775543321 12333444321 11233455677888888988887766
Q ss_pred ccccc--ccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccch
Q 037446 338 GLLQN--RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFA 415 (1165)
Q Consensus 338 ~vl~~--~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~ 415 (1165)
.+... .....+....+..... .++..+.. .....+...+.......+...+...+..
T Consensus 389 dV~~~LPpK~e~iv~v~LS~~Qk-------------------~lY~~ll~--k~~~~l~~g~~~~~LlnilmqLRk~cnH 447 (1033)
T PLN03142 389 DVEKGLPPKKETILKVGMSQMQK-------------------QYYKALLQ--KDLDVVNAGGERKRLLNIAMQLRKCCNH 447 (1033)
T ss_pred HHhhhCCCceeEEEeeCCCHHHH-------------------HHHHHHHH--HHHHHHhccccHHHHHHHHHHHHHHhCC
Confidence 54221 0000000001101111 11111100 0001111111111000010011100000
Q ss_pred h-cccch---hhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccc
Q 037446 416 R-FMSKN---EDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKA 491 (1165)
Q Consensus 416 ~-ll~~~---~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~ 491 (1165)
. +.... ....... .....+.|+..|.++|..+.. .+.|+||||++...++.|..+|...| +.+
T Consensus 448 P~L~~~~ep~~~~~~~e-------~lie~SgKl~lLdkLL~~Lk~----~g~KVLIFSQft~~LdiLed~L~~~g--~~y 514 (1033)
T PLN03142 448 PYLFQGAEPGPPYTTGE-------HLVENSGKMVLLDKLLPKLKE----RDSRVLIFSQMTRLLDILEDYLMYRG--YQY 514 (1033)
T ss_pred HHhhhcccccCcccchh-------HHhhhhhHHHHHHHHHHHHHh----cCCeEEeehhHHHHHHHHHHHHHHcC--CcE
Confidence 0 00000 0000000 011247899888888877654 68899999999999999999999888 777
Q ss_pred eeeecccccccCCCCCHHHHHHHHHHHhcC---CceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC
Q 037446 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAG---GYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD 568 (1165)
Q Consensus 492 ~~l~G~~~g~~~ggms~~eR~~il~~Fr~g---~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq 568 (1165)
..++| +++..+|.+++++|+.. .+.+|++|.+++.|||++.+++||+||++|||..+.|++||++|+||
T Consensus 515 ~rIdG--------sts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQ 586 (1033)
T PLN03142 515 CRIDG--------NTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQ 586 (1033)
T ss_pred EEECC--------CCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCC
Confidence 77777 78999999999999853 35689999999999999999999999999999999999999999999
Q ss_pred CccceecC
Q 037446 569 GRIPHIFK 576 (1165)
Q Consensus 569 Gkiv~v~~ 576 (1165)
.+-|.||.
T Consensus 587 kk~V~VyR 594 (1033)
T PLN03142 587 KKEVQVFR 594 (1033)
T ss_pred CceEEEEE
Confidence 87665553
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.5e-34 Score=365.19 Aligned_cols=342 Identities=22% Similarity=0.283 Sum_probs=229.0
Q ss_pred cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC-------CCCeEEEE
Q 037446 88 SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF-------PDGKIVFA 159 (1165)
Q Consensus 88 ~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~-------~~~rvLIL 159 (1165)
.|++.+.+.+.. +|.. |+++|.+++..++. +|+|+++|||+|||++|.+|+++.+... ...++|||
T Consensus 17 ~l~~~v~~~~~~-~~~~-----~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyI 90 (876)
T PRK13767 17 LLRPYVREWFKE-KFGT-----FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYV 90 (876)
T ss_pred hcCHHHHHHHHH-ccCC-----CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEE
Confidence 677777777655 6665 55566777777765 8999999999999999999999877531 23469999
Q ss_pred ecChhHHHHHHHHHHH-------Hh---C--CCCceEEEEeCCCChHHHHh-hcCCccEEEEcHHHHHHHHHcCcc--CC
Q 037446 160 APSRPLVMQQIEACHN-------IV---G--IPQEWTIDMTGQISPTKRAS-FWKTKRVFFVTPQVLEKDIQSGTC--LM 224 (1165)
Q Consensus 160 vPtr~La~Q~~~e~~k-------l~---g--~~~~~v~~l~G~~~~~~~~~-l~~~~dIlVaTpq~L~~~l~~~~~--~l 224 (1165)
+|+++|+.|+.+.+.. ++ | .+...+...+|+.....+.. +.+.++|+|+||++|..++....+ .+
T Consensus 91 sPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l 170 (876)
T PRK13767 91 SPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKL 170 (876)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHH
Confidence 9999999999876542 22 2 23567788899988776654 345789999999999877765433 46
Q ss_pred CCccEEEEcccccccCcc---chHHHHHHHHcCC-CCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhh
Q 037446 225 KYLVCLVIDEAHRATGNY---AYCTAIRELMSVP-VQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYV 300 (1165)
Q Consensus 225 ~~~~lVVIDEAHrl~~~~---~~~~~l~~L~~~~-~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~ 300 (1165)
.++++|||||||.+.+.. .+...+.++..+. ...++++||||+.+.. .+...+ ...... .
T Consensus 171 ~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~-~va~~L---~~~~~~------------~ 234 (876)
T PRK13767 171 RTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLE-EVAKFL---VGYEDD------------G 234 (876)
T ss_pred hcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHH-HHHHHh---cCcccc------------C
Confidence 789999999999998631 1333455555443 5678999999987632 222221 100000 0
Q ss_pred ccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHH
Q 037446 301 HNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYF 380 (1165)
Q Consensus 301 ~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~ 380 (1165)
.......+....... .+....+|.. .+
T Consensus 235 ~~r~~~iv~~~~~k~---------------------------~~i~v~~p~~--------------~l------------ 261 (876)
T PRK13767 235 EPRDCEIVDARFVKP---------------------------FDIKVISPVD--------------DL------------ 261 (876)
T ss_pred CCCceEEEccCCCcc---------------------------ceEEEeccCc--------------cc------------
Confidence 000001110000000 0000000000 00
Q ss_pred HHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCC
Q 037446 381 GALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDP 460 (1165)
Q Consensus 381 ~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~ 460 (1165)
.. .........+.+.|.+.+.
T Consensus 262 -------------------------------------~~------------------~~~~~~~~~l~~~L~~~i~---- 282 (876)
T PRK13767 262 -------------------------------------IH------------------TPAEEISEALYETLHELIK---- 282 (876)
T ss_pred -------------------------------------cc------------------cccchhHHHHHHHHHHHHh----
Confidence 00 0000001122233333332
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccC
Q 037446 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIME 540 (1165)
Q Consensus 461 ~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~ 540 (1165)
.+.++||||+++..|+.++..|...... .+.+.....+||+|++++|..++++|++|++++||||+++++|||+|+
T Consensus 283 ~~~~~LVF~nTr~~ae~la~~L~~~~~~----~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~ 358 (876)
T PRK13767 283 EHRTTLIFTNTRSGAERVLYNLRKRFPE----EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGY 358 (876)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhchh----hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCC
Confidence 3578999999999999999999874210 012233445677999999999999999999999999999999999999
Q ss_pred CCEEEEeccCCCHHHHHHHHhhcCCCC
Q 037446 541 VDLVICFDANVSPLRMIQRMGRTGRKH 567 (1165)
Q Consensus 541 vd~VI~~D~p~S~~~yiQriGRagR~G 567 (1165)
+++||+++.|.+...|+||+||+||.+
T Consensus 359 Vd~VI~~~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 359 IDLVVLLGSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred CcEEEEeCCCCCHHHHHHhcccCCCCC
Confidence 999999999999999999999999974
No 43
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=3.7e-34 Score=334.63 Aligned_cols=405 Identities=19% Similarity=0.232 Sum_probs=276.8
Q ss_pred CCChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHHH-hCCCCeEEEEecChhHHHHHHHHHHHHhCCCC
Q 037446 108 VPVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFFR-WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQ 181 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L~-~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~ 181 (1165)
.++|+||.++++|+.. -|+|+++.||+|||++.+..+..+.. .+-.+..|||||. +-..+|.++|.+| .|.
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~-StL~NW~~Ef~rf--~P~ 242 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPK-STLDNWMNEFKRF--TPS 242 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeH-hhHHHHHHHHHHh--CCC
Confidence 5799999999999986 47999999999999998876655443 4457899999999 7778999999999 566
Q ss_pred ceEEEEeCCCChHH--HHhhc--CCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCC
Q 037446 182 EWTIDMTGQISPTK--RASFW--KTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQ 257 (1165)
Q Consensus 182 ~~v~~l~G~~~~~~--~~~l~--~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~ 257 (1165)
+.++.++|+..... ++.+. ...+|+|+||++.++.-. .+.--.|.|+|||||||+++. -+...+.+..+...
T Consensus 243 l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f~~~ 318 (971)
T KOG0385|consen 243 LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--FLKKFNWRYLVIDEAHRIKNE--KSKLSKILREFKTD 318 (971)
T ss_pred cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--HHhcCCceEEEechhhhhcch--hhHHHHHHHHhccc
Confidence 78899999874322 11111 247999999999988632 445567999999999999984 33344444444444
Q ss_pred CeEEEEccCC-CCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhh
Q 037446 258 LRILALTATP-GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSA 336 (1165)
Q Consensus 258 ~riL~LSATP-~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~ 336 (1165)
..|++|||| .++...++.|++.+.+..+. ....+..||... ......++..+++.+++|++.|..+
T Consensus 319 -nrLLlTGTPLQNNL~ELWaLLnFllPdiF~----~~e~F~swF~~~--------~~~~~~e~v~~Lh~vL~pFlLRR~K 385 (971)
T KOG0385|consen 319 -NRLLLTGTPLQNNLHELWALLNFLLPDIFN----SAEDFDSWFDFT--------NCEGDQELVSRLHKVLRPFLLRRIK 385 (971)
T ss_pred -ceeEeeCCcccccHHHHHHHHHhhchhhcc----CHHHHHHHHccc--------ccccCHHHHHHHHhhhhHHHHHHHH
Confidence 459999999 66778888888776433221 123455666543 1122333788999999999999887
Q ss_pred hccccc----ccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCC--chHHHHHHHHHHh
Q 037446 337 IGLLQN----RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG--IRPAYEMLEEKLK 410 (1165)
Q Consensus 337 ~~vl~~----~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g--~~~~~~~L~~~~~ 410 (1165)
..+... .+...+++ +..++.++++ ..|. .-...+...+ .+.....+.-.++
T Consensus 386 ~dVe~sLppKkE~~iyvg--ms~mQkk~Y~------------------~iL~---kdl~~~n~~~~~~k~kL~NI~mQLR 442 (971)
T KOG0385|consen 386 SDVEKSLPPKKELIIYVG--MSSMQKKWYK------------------AILM---KDLDALNGEGKGEKTKLQNIMMQLR 442 (971)
T ss_pred HhHhhcCCCcceeeEecc--chHHHHHHHH------------------HHHH---hcchhhcccccchhhHHHHHHHHHH
Confidence 775332 11111111 0111111111 0000 0000111111 1111122222222
Q ss_pred hccchhcc----cchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcC
Q 037446 411 QGSFARFM----SKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG 486 (1165)
Q Consensus 411 ~~~~~~ll----~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g 486 (1165)
.......+ .....+.....+ ...++|+..|-++|..+.. .|+|||||++.....+.|..++.-.+
T Consensus 443 KccnHPYLF~g~ePg~pyttdehL-------v~nSGKm~vLDkLL~~Lk~----~GhRVLIFSQmt~mLDILeDyc~~R~ 511 (971)
T KOG0385|consen 443 KCCNHPYLFDGAEPGPPYTTDEHL-------VTNSGKMLVLDKLLPKLKE----QGHRVLIFSQMTRMLDILEDYCMLRG 511 (971)
T ss_pred HhcCCccccCCCCCCCCCCcchHH-------HhcCcceehHHHHHHHHHh----CCCeEEEeHHHHHHHHHHHHHHHhcC
Confidence 21111100 000011111111 1348899988888888776 79999999999999999999998888
Q ss_pred CCccceeeecccccccCCCCCHHHHHHHHHHHhcC---CceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhc
Q 037446 487 DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG---GYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRT 563 (1165)
Q Consensus 487 ~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g---~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRa 563 (1165)
+.+..+.| +++-++|.+.++.|... .+.+|++|.++|.|||+..+++||.||..|||...+|++.||
T Consensus 512 --y~ycRiDG--------St~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRa 581 (971)
T KOG0385|consen 512 --YEYCRLDG--------STSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRA 581 (971)
T ss_pred --ceeEeecC--------CCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHH
Confidence 88888887 67899999999999954 467899999999999999999999999999999999999999
Q ss_pred CCCCCCccceecC
Q 037446 564 GRKHDGRIPHIFK 576 (1165)
Q Consensus 564 gR~GqGkiv~v~~ 576 (1165)
+|+||.+-|.|+.
T Consensus 582 HRIGQ~K~V~V~R 594 (971)
T KOG0385|consen 582 HRIGQKKPVVVYR 594 (971)
T ss_pred HhhCCcCceEEEE
Confidence 9999988777664
No 44
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=7.3e-34 Score=358.15 Aligned_cols=437 Identities=18% Similarity=0.195 Sum_probs=247.9
Q ss_pred CCCCChHHHHHHHHHhhc---CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCc
Q 037446 106 VNVPVRDYQFAITKTALF---SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182 (1165)
Q Consensus 106 t~IQlr~yQ~eal~~ll~---rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~ 182 (1165)
..+.+.+||..++..+.. .++|+++++|+|||+.+++.+.+++..+..+++|||||. .|+.||..++.++++..
T Consensus 149 ~~~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~-- 225 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLR-- 225 (956)
T ss_pred CCCCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCC--
Confidence 457899999999988765 579999999999999999999888777777899999999 99999999998888754
Q ss_pred eEEEEeCCCChHHH---HhhcCCccEEEEcHHHHHHHHH-cCccCCCCccEEEEcccccccCc---cc-hHHHHHHHHcC
Q 037446 183 WTIDMTGQISPTKR---ASFWKTKRVFFVTPQVLEKDIQ-SGTCLMKYLVCLVIDEAHRATGN---YA-YCTAIRELMSV 254 (1165)
Q Consensus 183 ~v~~l~G~~~~~~~---~~l~~~~dIlVaTpq~L~~~l~-~~~~~l~~~~lVVIDEAHrl~~~---~~-~~~~l~~L~~~ 254 (1165)
...+.++...... ...+...+++|+|++.+...-. ...+.-..|++|||||||++... .+ ....+..+..
T Consensus 226 -~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~- 303 (956)
T PRK04914 226 -FSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAE- 303 (956)
T ss_pred -eEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhh-
Confidence 3333333211110 1233457899999999986321 12334457999999999999731 11 1122333322
Q ss_pred CCCCeEEEEccCCCC-ChHHHHHHHHhhccccccccCCchhhhhhhhccC-ceEEEEeccchhHHHHHHHHHHHHh----
Q 037446 255 PVQLRILALTATPGS-KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNR-KIELIEVEMGQEAVEINNRIWEVIR---- 328 (1165)
Q Consensus 255 ~~~~riL~LSATP~~-~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~-~~~~i~v~~~~~~~~i~~~l~~~i~---- 328 (1165)
....+|+|||||.. +..+++.++..|.+..+.-..........|-.-. .+... .....-.......+...+.
T Consensus 304 -~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l-~~~~~~~~~~~~~l~~ll~~~~~ 381 (956)
T PRK04914 304 -VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQAL-LAGEKLSDDALNALGELLGEQDI 381 (956)
T ss_pred -ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHH-hcCCcCCHHHHHHHHHHhcccch
Confidence 22467999999964 5566777776665444321111100000000000 00000 0000000000001111100
Q ss_pred -hHHHHHhhhcc---------cc-cccccCCchhhhhhhhhhhhcCCCCCCCcccchhh-HHHHHHHHHHHHHHHHHhhC
Q 037446 329 -PYTSRLSAIGL---------LQ-NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEV-EAYFGALITLYHIRRLLSSH 396 (1165)
Q Consensus 329 -~~~~rl~~~~v---------l~-~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l-~~~~~~L~~l~~i~~ll~~~ 396 (1165)
+.+..+..... +. -.+........+...+.....-+ ..........+ ..|.......
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp-~R~~~~~~l~~~~~y~~~~~~~---------- 450 (956)
T PRK04914 382 EPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFP-KRELHPIPLPLPEQYQTAIKVS---------- 450 (956)
T ss_pred hHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCC-cCceeEeecCCCHHHHHHHHHh----------
Confidence 00000000000 00 00000000001111111111100 00000000000 1111100000
Q ss_pred CchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHH
Q 037446 397 GIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVR 476 (1165)
Q Consensus 397 g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae 476 (1165)
....... .+. .+. +..............+|+..|+++|... .+.|+||||+++..+.
T Consensus 451 --------~~~~~~~-----~l~-pe~---~~~~~~~~~~~~~~d~Ki~~L~~~L~~~------~~~KvLVF~~~~~t~~ 507 (956)
T PRK04914 451 --------LEARARD-----MLY-PEQ---IYQEFEDNATWWNFDPRVEWLIDFLKSH------RSEKVLVICAKAATAL 507 (956)
T ss_pred --------HHHHHHh-----hcC-HHH---HHHHHhhhhhccccCHHHHHHHHHHHhc------CCCeEEEEeCcHHHHH
Confidence 0000000 000 000 0000000011223468999999988653 3679999999999999
Q ss_pred HHHHHHH-hcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcC--CceEEEEcccccccccccCCCEEEEeccCCCH
Q 037446 477 DIMNALA-TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG--GYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553 (1165)
Q Consensus 477 ~L~~~L~-~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g--~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~ 553 (1165)
.|.+.|. ..| +++..+|| +|++.+|.++++.|+++ ...|||||+++++|+|++.+++||+||+||||
T Consensus 508 ~L~~~L~~~~G--i~~~~ihG--------~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP 577 (956)
T PRK04914 508 QLEQALREREG--IRAAVFHE--------GMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNP 577 (956)
T ss_pred HHHHHHhhccC--eeEEEEEC--------CCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCH
Confidence 9999995 557 88888887 89999999999999974 58999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCccceecCh-hHHHHHHHHHHHHhcC
Q 037446 554 LRMIQRMGRTGRKHDGRIPHIFKP-EVQFVELSIEQYVSRG 593 (1165)
Q Consensus 554 ~~yiQriGRagR~GqGkiv~v~~~-d~~~~~~~Ie~~l~~~ 593 (1165)
..|+||+||++|.||.+.+.++.+ -...+...|.+++.++
T Consensus 578 ~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~ 618 (956)
T PRK04914 578 DLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEG 618 (956)
T ss_pred HHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhh
Confidence 999999999999998554444432 2222344555555443
No 45
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8.6e-34 Score=346.68 Aligned_cols=323 Identities=18% Similarity=0.192 Sum_probs=225.5
Q ss_pred CCChHHHHHHHHHhhc----CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCce
Q 037446 108 VPVRDYQFAITKTALF----SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEW 183 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~----rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~ 183 (1165)
+++|+||.+++.++.. +++||++|||+|||++++..+... .+++|||||+..|+.||.++|.+|+..+...
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 6799999999999875 478999999999999998776553 4679999999999999999999998776666
Q ss_pred EEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHc--------CccCCCCccEEEEcccccccCccchHHHHHHHHcCC
Q 037446 184 TIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS--------GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP 255 (1165)
Q Consensus 184 v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~--------~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~ 255 (1165)
+..++|+.... .+....|+|+||+++.....+ ..+....|++||+||||++.+. .|...+..+
T Consensus 329 I~~~tg~~k~~----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~-~fr~il~~l---- 399 (732)
T TIGR00603 329 ICRFTSDAKER----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA-MFRRVLTIV---- 399 (732)
T ss_pred EEEEecCcccc----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH-HHHHHHHhc----
Confidence 77777764321 224578999999998653221 1233457999999999999763 454333322
Q ss_pred CCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhh-hhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHH
Q 037446 256 VQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDV-SSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL 334 (1165)
Q Consensus 256 ~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i-~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl 334 (1165)
.....|||||||.+.+.....+... +....+...+...+ ..|+.......+.+++..+... .+ +..
T Consensus 400 ~a~~RLGLTATP~ReD~~~~~L~~L--iGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~---~y-------l~~- 466 (732)
T TIGR00603 400 QAHCKLGLTATLVREDDKITDLNFL--IGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYR---EY-------LRE- 466 (732)
T ss_pred CcCcEEEEeecCcccCCchhhhhhh--cCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHH---HH-------HHh-
Confidence 2335699999997765443333211 22223332222222 3566555555555554432110 00 000
Q ss_pred hhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccc
Q 037446 335 SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSF 414 (1165)
Q Consensus 335 ~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~ 414 (1165)
.... ..
T Consensus 467 -------------------------------------------------------------~~~~---k~---------- 472 (732)
T TIGR00603 467 -------------------------------------------------------------NSRK---RM---------- 472 (732)
T ss_pred -------------------------------------------------------------cchh---hh----------
Confidence 0000 00
Q ss_pred hhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceee
Q 037446 415 ARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEF 494 (1165)
Q Consensus 415 ~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l 494 (1165)
. + ......|+.++..++..+- ..+.++||||.+...++.++..|. +..+
T Consensus 473 ---------------~----l-~~~np~K~~~~~~Li~~he----~~g~kiLVF~~~~~~l~~~a~~L~-------~~~I 521 (732)
T TIGR00603 473 ---------------L----L-YVMNPNKFRACQFLIRFHE----QRGDKIIVFSDNVFALKEYAIKLG-------KPFI 521 (732)
T ss_pred ---------------H----H-hhhChHHHHHHHHHHHHHh----hcCCeEEEEeCCHHHHHHHHHHcC-------CceE
Confidence 0 0 0011356677666665432 257899999999999988888762 2235
Q ss_pred ecccccccCCCCCHHHHHHHHHHHhcC-CceEEEEcccccccccccCCCEEEEeccC-CCHHHHHHHHhhcCCCCCCc
Q 037446 495 IGQSSGKASKGQSQKVQQAVLEKFRAG-GYNVIVATSIGEEGLDIMEVDLVICFDAN-VSPLRMIQRMGRTGRKHDGR 570 (1165)
Q Consensus 495 ~G~~~g~~~ggms~~eR~~il~~Fr~g-~~~VLVATda~~eGLDIp~vd~VI~~D~p-~S~~~yiQriGRagR~GqGk 570 (1165)
+| ++++.+|.+++++|+.| .+++||+|+++++|||+|++++||+++.| .|...|+||+||++|.++++
T Consensus 522 ~G--------~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~ 591 (732)
T TIGR00603 522 YG--------PTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGS 591 (732)
T ss_pred EC--------CCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCC
Confidence 55 78999999999999965 78999999999999999999999999998 49999999999999998643
No 46
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-34 Score=350.69 Aligned_cols=363 Identities=20% Similarity=0.274 Sum_probs=287.9
Q ss_pred CCCCCCCCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHh--
Q 037446 74 QGTEEFNEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW-- 150 (1165)
Q Consensus 74 ~~~~~~~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~-- 150 (1165)
-+...+-+..+|.+ +++..++..+...+|..|++|| -++++..+.++++|..+.||+|||++|++|++.+...
T Consensus 356 ~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ----~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr 431 (997)
T KOG0334|consen 356 KGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQ----AQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQR 431 (997)
T ss_pred ccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchh----hhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCC
Confidence 35566677788999 9999999999999999999988 4455555566999999999999999999999866533
Q ss_pred ----CCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHHHHHHcCcc---
Q 037446 151 ----FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLEKDIQSGTC--- 222 (1165)
Q Consensus 151 ----~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~~~l~~~~~--- 222 (1165)
+.++.+||++||++|+.|+.+++.++.....+.++.++|+....++ ..+..++.|+|+||+++.+.+-....
T Consensus 432 ~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvt 511 (997)
T KOG0334|consen 432 PLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVT 511 (997)
T ss_pred ChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccc
Confidence 2345799999999999999999999988788889999999987665 46667899999999999998754333
Q ss_pred CCCCccEEEEcccccccCccchHHHHHHHH-cCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhc
Q 037446 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVH 301 (1165)
Q Consensus 223 ~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~-~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~ 301 (1165)
.+.++.+||+||||++.. .+|..++..|+ ++++.+|++++|||.++.+..+..-+ ++
T Consensus 512 nlrR~t~lv~deaDrmfd-mgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~v---------------------l~ 569 (997)
T KOG0334|consen 512 NLRRVTYLVLDEADRMFD-MGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKV---------------------LK 569 (997)
T ss_pred cccccceeeechhhhhhe-eccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHh---------------------hc
Confidence 455666999999999995 47766554455 57788999999999876543332221 11
Q ss_pred cCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHH
Q 037446 302 NRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFG 381 (1165)
Q Consensus 302 ~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~ 381 (1165)
..++ +.+.... .+
T Consensus 570 -~Pve-iiv~~~s--------------------------------vV--------------------------------- 582 (997)
T KOG0334|consen 570 -KPVE-IIVGGRS--------------------------------VV--------------------------------- 582 (997)
T ss_pred -CCee-EEEccce--------------------------------eE---------------------------------
Confidence 1111 1110000 00
Q ss_pred HHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccC-CCChHHHHHHHHHHHhhcccCC
Q 037446 382 ALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHG-AQSPKLSKMLEVLVDHFKTKDP 460 (1165)
Q Consensus 382 ~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~-~~s~Kl~~LlelL~~~~~~~~~ 460 (1165)
...+.+.+... ....|+..|+++|..++.
T Consensus 583 ----------------------------------------------~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e---- 612 (997)
T KOG0334|consen 583 ----------------------------------------------CKEVTQVVRVCAIENEKFLKLLELLGERYE---- 612 (997)
T ss_pred ----------------------------------------------eccceEEEEEecCchHHHHHHHHHHHHHhh----
Confidence 00001111112 256789999999988765
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccC
Q 037446 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIME 540 (1165)
Q Consensus 461 ~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~ 540 (1165)
..++||||...+.|+.+.+.|...| +.+..+|| +.++.+|..+++.|++|.+++||||+++++|||+..
T Consensus 613 -~~~tiiFv~~qe~~d~l~~~L~~ag--~~~~slHG--------gv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~ 681 (997)
T KOG0334|consen 613 -DGKTIIFVDKQEKADALLRDLQKAG--YNCDSLHG--------GVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKE 681 (997)
T ss_pred -cCCEEEEEcCchHHHHHHHHHHhcC--cchhhhcC--------CCchHHHHhHHHHHhccCceEEEehhhhhccccccc
Confidence 7899999999999999999999888 88877777 789999999999999999999999999999999999
Q ss_pred CCEEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHHHHHHHHHH
Q 037446 541 VDLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 541 vd~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
+.+|||||.|...++|+||.||+||.| +|..+++..++...+...|-+.+
T Consensus 682 l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 682 LILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred ceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 999999999999999999999999999 59899999997777776666665
No 47
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-35 Score=320.81 Aligned_cols=350 Identities=19% Similarity=0.296 Sum_probs=277.4
Q ss_pred CCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeEEEEec
Q 037446 84 SFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIVFAAP 161 (1165)
Q Consensus 84 sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rvLILvP 161 (1165)
+|++ +|.+.|++.++..||.+|+.|| |.++++.+.+.|+++.+++|+|||.+|.+++++.+... ....+|+++|
T Consensus 27 sfddm~L~e~LLrgiy~yGFekPSaIQ----qraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaP 102 (397)
T KOG0327|consen 27 SFDDMNLKESLLRGIYAYGFEKPSAIQ----QRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAP 102 (397)
T ss_pred hhhhcCCCHHHHhHHHhhccCCchHHH----hccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcc
Confidence 8999 9999999999999999999999 99999999999999999999999999999999987432 2236999999
Q ss_pred ChhHHHHHHHHHHHHhCCCCceEEEEeCCCChH-HHHhh-cCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPT-KRASF-WKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 162 tr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~-~~~~l-~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
+++|+.|.......+.......+..+.|+.... +...+ ...++|+++||+++...+....+....++++|+|||+.++
T Consensus 103 treLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmL 182 (397)
T KOG0327|consen 103 TRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEML 182 (397)
T ss_pred hHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhh
Confidence 999999999888887666666677677766644 22223 3458999999999999999888888899999999999999
Q ss_pred CccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHH
Q 037446 240 GNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVE 318 (1165)
Q Consensus 240 ~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~ 318 (1165)
.. ++...+..+.+ ++...|++++|||.+.....+.+ .|+..+ +.+....+..
T Consensus 183 s~-gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~---------------------~f~~~p----v~i~vkk~~l- 235 (397)
T KOG0327|consen 183 SR-GFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTK---------------------KFMREP----VRILVKKDEL- 235 (397)
T ss_pred cc-chHHHHHHHHHHcCcchhheeecccCcHHHHHHHH---------------------HhccCc----eEEEecchhh-
Confidence 84 88888888875 78889999999998754322211 122211 1111111100
Q ss_pred HHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCc
Q 037446 319 INNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGI 398 (1165)
Q Consensus 319 i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~ 398 (1165)
...|+
T Consensus 236 ---------------------------------------------------------------------------tl~gi 240 (397)
T KOG0327|consen 236 ---------------------------------------------------------------------------TLEGI 240 (397)
T ss_pred ---------------------------------------------------------------------------hhhhe
Confidence 00111
Q ss_pred hHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHH
Q 037446 399 RPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDI 478 (1165)
Q Consensus 399 ~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L 478 (1165)
++++.. ....+|+..|+++..+ -...+|||++++.+..|
T Consensus 241 kq~~i~---------------------------------v~k~~k~~~l~dl~~~--------~~q~~if~nt~r~v~~l 279 (397)
T KOG0327|consen 241 KQFYIN---------------------------------VEKEEKLDTLCDLYRR--------VTQAVIFCNTRRKVDNL 279 (397)
T ss_pred eeeeee---------------------------------ccccccccHHHHHHHh--------hhcceEEecchhhHHHH
Confidence 111111 1112377777776652 46899999999999999
Q ss_pred HHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHH
Q 037446 479 MNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558 (1165)
Q Consensus 479 ~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQ 558 (1165)
...|..++ ..+.++|| .|.+.+|..++.+|+.|..+|||+|+.+++|+|+..+..|||||.|.+...|+|
T Consensus 280 ~~~L~~~~--~~~s~~~~--------d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yih 349 (397)
T KOG0327|consen 280 TDKLRAHG--FTVSAIHG--------DMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIH 349 (397)
T ss_pred HHHHhhCC--ceEEEeec--------ccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhh
Confidence 99998888 77777776 789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCC-CCccceecChhHHHHHHHHHHHH
Q 037446 559 RMGRTGRKH-DGRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 559 riGRagR~G-qGkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
|+||+||.| +|..+.++..+.......++++.
T Consensus 350 R~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y 382 (397)
T KOG0327|consen 350 RIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFY 382 (397)
T ss_pred hcccccccCCCceeeeeehHhhHHHHHhHHHhc
Confidence 999999999 68888888776666666777654
No 48
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-35 Score=324.97 Aligned_cols=355 Identities=18% Similarity=0.224 Sum_probs=280.9
Q ss_pred CCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCC--CCeEEE
Q 037446 82 GSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP--DGKIVF 158 (1165)
Q Consensus 82 ~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~--~~rvLI 158 (1165)
.-.|.. +|+..+++++...||..||+|| |+.++..+.+++++..+-||+|||.+|++||++.+.... +-++|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiq----RKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQ----RKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchh----cccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceee
Confidence 347989 9999999999999999999999 888888887899999999999999999999999986654 348999
Q ss_pred EecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccccc
Q 037446 159 AAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHR 237 (1165)
Q Consensus 159 LvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHr 237 (1165)
+.||++|+.|..+.++.+..........++|+.+..++ ..+..++|||++||+++....-.-.+.+..+.|||+|||++
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999877777777777777666554 55556899999999999887665557788999999999999
Q ss_pred ccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhH
Q 037446 238 ATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316 (1165)
Q Consensus 238 l~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~ 316 (1165)
+..+ +|++.+.+++. ++...|.++||||.++..-++.. .....++.+.+.-+
T Consensus 176 lfem-gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fak-------------------------aGl~~p~lVRldve- 228 (529)
T KOG0337|consen 176 LFEM-GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAK-------------------------AGLVPPVLVRLDVE- 228 (529)
T ss_pred HHhh-hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHH-------------------------ccCCCCceEEeehh-
Confidence 9996 89888888874 77788999999998764211110 00011111110000
Q ss_pred HHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhC
Q 037446 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSH 396 (1165)
Q Consensus 317 ~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~ 396 (1165)
T Consensus 229 -------------------------------------------------------------------------------- 228 (529)
T KOG0337|consen 229 -------------------------------------------------------------------------------- 228 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHH
Q 037446 397 GIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVR 476 (1165)
Q Consensus 397 g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae 476 (1165)
.++...++-.........|..+|+.++..+.. ..++||||.+..+++
T Consensus 229 ----------------------------tkise~lk~~f~~~~~a~K~aaLl~il~~~~~-----~~~t~vf~~tk~hve 275 (529)
T KOG0337|consen 229 ----------------------------TKISELLKVRFFRVRKAEKEAALLSILGGRIK-----DKQTIVFVATKHHVE 275 (529)
T ss_pred ----------------------------hhcchhhhhheeeeccHHHHHHHHHHHhcccc-----ccceeEEecccchHH
Confidence 00111111122223446789999999977643 668999999999999
Q ss_pred HHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHH
Q 037446 477 DIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556 (1165)
Q Consensus 477 ~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~y 556 (1165)
++...|+..| +.+..+.| .|.+..|..-+..|+.++..+||.||+++||+|||-.+.||+||.|.....|
T Consensus 276 ~~~~ll~~~g--~~~s~iys--------slD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klF 345 (529)
T KOG0337|consen 276 YVRGLLRDFG--GEGSDIYS--------SLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLF 345 (529)
T ss_pred HHHHHHHhcC--CCcccccc--------ccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceE
Confidence 9999999998 55544444 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC-CCccceecChhHHHHHHHHHHHH
Q 037446 557 IQRMGRTGRKH-DGRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 557 iQriGRagR~G-qGkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
+||+||+.|.| .|..+-++.++.....-.+..++
T Consensus 346 vhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lfl 380 (529)
T KOG0337|consen 346 VHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFL 380 (529)
T ss_pred EEEecchhhccccceEEEEEecccchhhhhhhhhc
Confidence 99999999999 58877666665554444555544
No 49
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.7e-33 Score=339.62 Aligned_cols=329 Identities=18% Similarity=0.213 Sum_probs=219.6
Q ss_pred CCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEE
Q 037446 107 NVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTI 185 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~ 185 (1165)
.++||+||.+++..++. +++++++|||+|||++++..+...+.. ...++||||||++|+.||.++|.++...+...+.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~-~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN-YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 46899999998877776 679999999999999887655443332 3448999999999999999999998765544454
Q ss_pred EEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEcc
Q 037446 186 DMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTA 265 (1165)
Q Consensus 186 ~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSA 265 (1165)
.+.|+.... .+.+|+|+||+++.+... ..+.++++||+||||++.+. .+...+..+ +...+++||||
T Consensus 191 ~i~~g~~~~------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~-~~~~il~~~---~~~~~~lGLTA 257 (501)
T PHA02558 191 KIYSGTAKD------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK-SLTSIITKL---DNCKFKFGLTG 257 (501)
T ss_pred EEecCcccC------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch-hHHHHHHhh---hccceEEEEec
Confidence 555554321 457999999999976432 24578999999999999874 554444333 34467899999
Q ss_pred CCCCChHHHHHHHHhhccccccccCCchhhh-hhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhccccccc
Q 037446 266 TPGSKQQTIQHIIDNLYISTLEYRNESDQDV-SSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRD 344 (1165)
Q Consensus 266 TP~~~~~~l~~Li~~L~is~i~~~~~~~~~i-~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~ 344 (1165)
||.+.......+...++ .+.........+ ..++....+..+.+........ .
T Consensus 258 Tp~~~~~~~~~~~~~fG--~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~---~---------------------- 310 (501)
T PHA02558 258 SLRDGKANILQYVGLFG--DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRV---K---------------------- 310 (501)
T ss_pred cCCCccccHHHHHHhhC--CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhh---h----------------------
Confidence 99654322222221111 111100000000 0111111111111110000000 0
Q ss_pred ccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhH
Q 037446 345 YQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDI 424 (1165)
Q Consensus 345 ~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~ 424 (1165)
+ ........+..+
T Consensus 311 -------------------------------~-----------------~~~~~~~~~~~l------------------- 323 (501)
T PHA02558 311 -------------------------------L-----------------KGEDYQEEIKYI------------------- 323 (501)
T ss_pred -------------------------------h-----------------cccchHHHHHHH-------------------
Confidence 0 000000000000
Q ss_pred HHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCC
Q 037446 425 RKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASK 504 (1165)
Q Consensus 425 ~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~g 504 (1165)
.....|...+.+++..+.. .+.++||||.++++++.|++.|+..| .++..+||
T Consensus 324 -------------~~~~~Rn~~I~~~~~~~~~----~~~~~lV~~~~~~h~~~L~~~L~~~g--~~v~~i~G-------- 376 (501)
T PHA02558 324 -------------TSHTKRNKWIANLALKLAK----KGENTFVMFKYVEHGKPLYEMLKKVY--DKVYYVSG-------- 376 (501)
T ss_pred -------------hccHHHHHHHHHHHHHHHh----cCCCEEEEEEEHHHHHHHHHHHHHcC--CCEEEEeC--------
Confidence 0011233344444444332 46789999999999999999999988 78888887
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEc-ccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCc
Q 037446 505 GQSQKVQQAVLEKFRAGGYNVIVAT-SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR 570 (1165)
Q Consensus 505 gms~~eR~~il~~Fr~g~~~VLVAT-da~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGk 570 (1165)
++++++|..+++.|++|+..+|||| +++++|+|+|++++||+++++.+...|+||+||++|.++|+
T Consensus 377 ~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 377 EVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 7899999999999999999999998 89999999999999999999999999999999999999766
No 50
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=326.22 Aligned_cols=367 Identities=20% Similarity=0.253 Sum_probs=272.9
Q ss_pred CCCCCCCCCCCCCCCCc-----cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHH
Q 037446 71 PKPQGTEEFNEGSSFDE-----SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 71 ~~~~~~~~~~~~~sFee-----~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil 145 (1165)
....|...+....+|.+ ...+.+++.+...+|..|+++|- +.+.-.+..++++.++|||+|||++|.+|++
T Consensus 120 ~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~----~aipvfl~~r~~lAcapTGsgKtlaf~~Pil 195 (593)
T KOG0344|consen 120 INVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQK----QAIPVFLEKRDVLACAPTGSGKTLAFNLPIL 195 (593)
T ss_pred eeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccc----hhhhhhhcccceEEeccCCCcchhhhhhHHH
Confidence 33456666777788886 88999999999999999999993 3444445559999999999999999999999
Q ss_pred HHHHhCC------CCeEEEEecChhHHHHHHHHHHHHh--CCCCceEEEEeCCCChHHHH--hhcCCccEEEEcHHHHHH
Q 037446 146 NFFRWFP------DGKIVFAAPSRPLVMQQIEACHNIV--GIPQEWTIDMTGQISPTKRA--SFWKTKRVFFVTPQVLEK 215 (1165)
Q Consensus 146 ~~L~~~~------~~rvLILvPtr~La~Q~~~e~~kl~--g~~~~~v~~l~G~~~~~~~~--~l~~~~dIlVaTpq~L~~ 215 (1165)
..+.... +-+++|+.|+++|+.|.++++.++. .........+.......++. .....++|+++||-++..
T Consensus 196 ~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~ 275 (593)
T KOG0344|consen 196 QHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVG 275 (593)
T ss_pred HHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHH
Confidence 9885433 2379999999999999999999976 22223333333332222222 122357999999999999
Q ss_pred HHHcCc--cCCCCccEEEEcccccccCccchHHHHHHHHc--CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCC
Q 037446 216 DIQSGT--CLMKYLVCLVIDEAHRATGNYAYCTAIRELMS--VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNE 291 (1165)
Q Consensus 216 ~l~~~~--~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~--~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~ 291 (1165)
++..+. +.+..+.++|+|||+++.+...|..++..+.. ..+..++=+||||....++....++...
T Consensus 276 ~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~---------- 345 (593)
T KOG0344|consen 276 LLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSD---------- 345 (593)
T ss_pred HhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhcc----------
Confidence 988765 67888999999999999985356666666654 2345667789999876655443332110
Q ss_pred chhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcc
Q 037446 292 SDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQI 371 (1165)
Q Consensus 292 ~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~ 371 (1165)
...+.+......
T Consensus 346 -------------~~~vivg~~~sa------------------------------------------------------- 357 (593)
T KOG0344|consen 346 -------------LKRVIVGLRNSA------------------------------------------------------- 357 (593)
T ss_pred -------------ceeEEEecchhH-------------------------------------------------------
Confidence 001111100000
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHH
Q 037446 372 KFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVL 451 (1165)
Q Consensus 372 ~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL 451 (1165)
.....+..+..+....|+.++.+++
T Consensus 358 -------------------------------------------------------~~~V~QelvF~gse~~K~lA~rq~v 382 (593)
T KOG0344|consen 358 -------------------------------------------------------NETVDQELVFCGSEKGKLLALRQLV 382 (593)
T ss_pred -------------------------------------------------------hhhhhhhheeeecchhHHHHHHHHH
Confidence 0011122334455678888899888
Q ss_pred HHhhcccCCCCCeEEEEeCchHHHHHHHHHHH-hcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcc
Q 037446 452 VDHFKTKDPKHSRVIIFSNFRGSVRDIMNALA-TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATS 530 (1165)
Q Consensus 452 ~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~-~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATd 530 (1165)
..-+ ..++|||+++.+.|..|...|. -.+ +.+..+|| ..++.+|.+.+++|+.|++.+||||+
T Consensus 383 ~~g~------~PP~lIfVQs~eRak~L~~~L~~~~~--i~v~vIh~--------e~~~~qrde~~~~FR~g~IwvLicTd 446 (593)
T KOG0344|consen 383 ASGF------KPPVLIFVQSKERAKQLFEELEIYDN--INVDVIHG--------ERSQKQRDETMERFRIGKIWVLICTD 446 (593)
T ss_pred hccC------CCCeEEEEecHHHHHHHHHHhhhccC--cceeeEec--------ccchhHHHHHHHHHhccCeeEEEehh
Confidence 6643 5799999999999999999995 333 66666666 77999999999999999999999999
Q ss_pred cccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHH
Q 037446 531 IGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 531 a~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
+++||+|+.++++||+||.|.+...|+||+||+||.|+ |+++++|..+.......|.+.+
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 99999999999999999999999999999999999995 9999999876554444555544
No 51
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=1.6e-32 Score=332.43 Aligned_cols=465 Identities=17% Similarity=0.225 Sum_probs=296.5
Q ss_pred cCCHHHHHHHHH--------------CCCCCCCC--CCChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHH
Q 037446 88 SLCHVQIDAEAA--------------KTWIYPVN--VPVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 88 ~L~~~Ll~~L~~--------------~g~~~Pt~--IQlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
++++.|++...+ ..|.-|.+ .++|.||+++++|+.. -++|+|++||.|||++.+..+..
T Consensus 938 gls~eLl~~ke~erkFLeqlldpski~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAs 1017 (1549)
T KOG0392|consen 938 GLSKELLASKEEERKFLEQLLDPSKIPEYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILAS 1017 (1549)
T ss_pred cccHHHHHhHHHHHHHHHHhcCcccCCccccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHH
Confidence 777777765221 22444444 4799999999999976 48999999999999998876654
Q ss_pred HHHhC-------CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHH-HHhhcCCccEEEEcHHHHHHHHH
Q 037446 147 FFRWF-------PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQ 218 (1165)
Q Consensus 147 ~L~~~-------~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l~ 218 (1165)
-.... .....|||||. .|+-.|..++.+++.+ ..+..+.|...... -+...++++|+|++|+.+.+++.
T Consensus 1018 d~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d 1094 (1549)
T KOG0392|consen 1018 DHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD 1094 (1549)
T ss_pred HHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH
Confidence 33222 12248999999 9999999999999655 56667777644321 22333567999999999998776
Q ss_pred cCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCC-CCChHHHHHHHHhhccccccccCCchhhhh
Q 037446 219 SGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP-GSKQQTIQHIIDNLYISTLEYRNESDQDVS 297 (1165)
Q Consensus 219 ~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP-~~~~~~l~~Li~~L~is~i~~~~~~~~~i~ 297 (1165)
.+.-.+|.|+|+||.|-+++ +-....+++..+..+.| +.||||| .|++.+++.||+.|.+..+........
T Consensus 1095 --~l~~~~wNYcVLDEGHVikN--~ktkl~kavkqL~a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqs--- 1166 (1549)
T KOG0392|consen 1095 --YLIKIDWNYCVLDEGHVIKN--SKTKLTKAVKQLRANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQS--- 1166 (1549)
T ss_pred --HHHhcccceEEecCcceecc--hHHHHHHHHHHHhhcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHH---
Confidence 34456799999999999998 56566666666656655 8899999 677789999999998776654322111
Q ss_pred hhhccCceEEEEeccc----hhHHHHHHHHHHHHhhHHHHHhhhcccccc------c-ccCCchhhhhhhhhhhhcC---
Q 037446 298 SYVHNRKIELIEVEMG----QEAVEINNRIWEVIRPYTSRLSAIGLLQNR------D-YQTLSPVDLLNSRDKFRQA--- 363 (1165)
Q Consensus 298 ~y~~~~~~~~i~v~~~----~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~------~-~~~l~p~~l~~~~~~~~~~--- 363 (1165)
+| .++...--..... +......+.++..+-||+.|..+.+++.+- + |-.++|.+..-. ..|...
T Consensus 1167 rf-~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY-~df~~~~k~ 1244 (1549)
T KOG0392|consen 1167 RF-GKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLY-RDFVKKAKQ 1244 (1549)
T ss_pred Hh-cchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHH-HHHHHHhcc
Confidence 11 1111000000111 112234456777888888887777665431 1 222333221111 111111
Q ss_pred -CCCCCCcccchhhHH-HHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHh---hhccC
Q 037446 364 -PPPNLPQIKFGEVEA-YFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQ---SISHG 438 (1165)
Q Consensus 364 -~~~~i~~~~~~~l~~-~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~---~~~~~ 438 (1165)
....+... ....++ .....+.+.++++++...+.. +.....++..+...+.. .+...
T Consensus 1245 ~~~~~~d~~-~~S~gt~~~HvFqaLqYlrKLcnHpaLv-----------------lt~~hp~la~i~~~l~~~~~~LHdi 1306 (1549)
T KOG0392|consen 1245 CVSSQIDGG-EESLGTDKTHVFQALQYLRKLCNHPALV-----------------LTPVHPDLAAIVSHLAHFNSSLHDI 1306 (1549)
T ss_pred ccccccccc-hhccCcchHHHHHHHHHHHHhcCCccee-----------------eCCCcchHHHHHHHHHHhhhhHHHh
Confidence 00011000 000000 111112223333333332211 00011122222222211 11223
Q ss_pred CCChHHHHHHHHHHHhhcccC----------CCCCeEEEEeCchHHHHHHHHHHHhcC-CCccceeeecccccccCCCCC
Q 037446 439 AQSPKLSKMLEVLVDHFKTKD----------PKHSRVIIFSNFRGSVRDIMNALATIG-DLVKATEFIGQSSGKASKGQS 507 (1165)
Q Consensus 439 ~~s~Kl~~LlelL~~~~~~~~----------~~~~kvIVF~~sr~~ae~L~~~L~~~g-~~i~~~~l~G~~~g~~~ggms 507 (1165)
..++|+.+|-++|.+.-...+ -.++|+||||+.+.+++.+.+.|-+.. +.+...++.| +.+
T Consensus 1307 ~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDG--------SVp 1378 (1549)
T KOG0392|consen 1307 QHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDG--------SVP 1378 (1549)
T ss_pred hhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecC--------CCC
Confidence 568999999999977533111 146899999999999999999886543 2233445555 789
Q ss_pred HHHHHHHHHHHhcC-CceEE-EEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCccceecChhHHHHHHH
Q 037446 508 QKVQQAVLEKFRAG-GYNVI-VATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELS 585 (1165)
Q Consensus 508 ~~eR~~il~~Fr~g-~~~VL-VATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv~v~~~d~~~~~~~ 585 (1165)
+.+|.+++++|+++ .++|| ++|-++|.|+|+.++++||+++-.|||...+|++.||+|+||.++|-||.- ..+.+
T Consensus 1379 p~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRl---ItrGT 1455 (1549)
T KOG0392|consen 1379 PGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRL---ITRGT 1455 (1549)
T ss_pred cHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeee---hhccc
Confidence 99999999999998 57765 789999999999999999999999999999999999999999999999953 33356
Q ss_pred HHHHHhcCC
Q 037446 586 IEQYVSRGK 594 (1165)
Q Consensus 586 Ie~~l~~~~ 594 (1165)
+|+.+...+
T Consensus 1456 LEEKVMgLQ 1464 (1549)
T KOG0392|consen 1456 LEEKVMGLQ 1464 (1549)
T ss_pred HHHHHhhHH
Confidence 666664443
No 52
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.3e-33 Score=331.03 Aligned_cols=357 Identities=22% Similarity=0.255 Sum_probs=252.8
Q ss_pred CChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEE
Q 037446 109 PVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDM 187 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l 187 (1165)
.+|+-|.+++..++. +++|+.+|||.||++||++|++-. .|.+|||.|..+|+.+|.+.++.. | +....+
T Consensus 17 ~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----~G~TLVVSPLiSLM~DQV~~l~~~-G---i~A~~l 87 (590)
T COG0514 17 SFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----EGLTLVVSPLISLMKDQVDQLEAA-G---IRAAYL 87 (590)
T ss_pred ccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----CCCEEEECchHHHHHHHHHHHHHc-C---ceeehh
Confidence 577789999999987 899999999999999999999764 678999999999999999999884 4 346666
Q ss_pred eCCCChHHHHhhcC-----CccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCc-cchHHHHHHHHc---CCCCC
Q 037446 188 TGQISPTKRASFWK-----TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN-YAYCTAIRELMS---VPVQL 258 (1165)
Q Consensus 188 ~G~~~~~~~~~l~~-----~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~-~~~~~~l~~L~~---~~~~~ 258 (1165)
.+..+..++..++. ..++++.+|++|........+....+.++||||||++..+ |.|+..++.+.. ..++.
T Consensus 88 nS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~ 167 (590)
T COG0514 88 NSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNP 167 (590)
T ss_pred hcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCC
Confidence 77767666554433 3799999999998765555555677899999999999987 457777777654 33467
Q ss_pred eEEEEccCCCCChHHHHHHHHhhccccc-cccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhh
Q 037446 259 RILALTATPGSKQQTIQHIIDNLYISTL-EYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337 (1165)
Q Consensus 259 riL~LSATP~~~~~~l~~Li~~L~is~i-~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~ 337 (1165)
.+++||||....+ ..+++..|.+... .+. ..+.++++.
T Consensus 168 p~~AlTATA~~~v--~~DI~~~L~l~~~~~~~--------~sfdRpNi~------------------------------- 206 (590)
T COG0514 168 PVLALTATATPRV--RDDIREQLGLQDANIFR--------GSFDRPNLA------------------------------- 206 (590)
T ss_pred CEEEEeCCCChHH--HHHHHHHhcCCCcceEE--------ecCCCchhh-------------------------------
Confidence 8999999986554 2344444443221 000 000000000
Q ss_pred cccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhc
Q 037446 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARF 417 (1165)
Q Consensus 338 ~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~l 417 (1165)
| .+..+
T Consensus 207 -------------------------------------------------~----------------~v~~~--------- 212 (590)
T COG0514 207 -------------------------------------------------L----------------KVVEK--------- 212 (590)
T ss_pred -------------------------------------------------h----------------hhhhc---------
Confidence 0 00000
Q ss_pred ccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecc
Q 037446 418 MSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ 497 (1165)
Q Consensus 418 l~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~ 497 (1165)
.....++. .|.+. .......+||||.||+.++.+++.|...| +++..|||
T Consensus 213 --------------------~~~~~q~~----fi~~~---~~~~~~~GIIYc~sRk~~E~ia~~L~~~g--~~a~~YHa- 262 (590)
T COG0514 213 --------------------GEPSDQLA----FLATV---LPQLSKSGIIYCLTRKKVEELAEWLRKNG--ISAGAYHA- 262 (590)
T ss_pred --------------------ccHHHHHH----HHHhh---ccccCCCeEEEEeeHHhHHHHHHHHHHCC--CceEEecC-
Confidence 00001111 22210 12246779999999999999999999998 88877776
Q ss_pred cccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-CccceecC
Q 037446 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFK 576 (1165)
Q Consensus 498 ~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~ 576 (1165)
||+.++|..+.++|..++..|+|||.++++|||.|+|++|||||+|.|.+.|+|.+|||||.|. ...+++|.
T Consensus 263 -------Gl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~ 335 (590)
T COG0514 263 -------GLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYS 335 (590)
T ss_pred -------CCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeec
Confidence 8999999999999999999999999999999999999999999999999999999999999995 66778887
Q ss_pred hhHHHHHHH-HHHHHhc--CCcccccccccccHHHhhcCHHHHHHHHHHcCCCC
Q 037446 577 PEVQFVELS-IEQYVSR--GKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPTS 627 (1165)
Q Consensus 577 ~d~~~~~~~-Ie~~l~~--~~~l~~~~~~~~~~f~~~l~~~e~~~l~~~f~~~k 627 (1165)
+....+... |+..... .+.+........-.+. +...+.+..++.||++..
T Consensus 336 ~~D~~~~~~~i~~~~~~~~~~~~~~~kl~~~~~~~-e~~~crr~~ll~yfge~~ 388 (590)
T COG0514 336 PEDIRWQRYLIEQSKPDEEQKQIELAKLRQMIAYC-ETQTCRRLVLLKYFGEDE 388 (590)
T ss_pred cccHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc-ccccchHHHHHHhcCccc
Confidence 765433322 2221110 0000000111111233 334477888999999863
No 53
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=5.7e-33 Score=350.74 Aligned_cols=349 Identities=20% Similarity=0.228 Sum_probs=237.3
Q ss_pred CCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHH-hh-cCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 84 SFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKT-AL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 84 sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~-ll-~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
.|++ ++++.+.+.+...||..+ +++|.+++.. +. ++|+|+++|||+|||++|.++++..+.. .++++|||+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l-----~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-~~~~~l~l~ 75 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEEL-----YPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-EGGKAVYLV 75 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCC-----CHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 5677 899999999999999765 4566777764 33 4899999999999999999999887654 357999999
Q ss_pred cChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccC
Q 037446 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 161 Ptr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
|+++|+.|+.+.+.++.. .+..+..++|+...... ....++|+|+||+++..++......+.++++|||||+|.+.+
T Consensus 76 P~~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~~~~--~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~ 152 (720)
T PRK00254 76 PLKALAEEKYREFKDWEK-LGLRVAMTTGDYDSTDE--WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGS 152 (720)
T ss_pred ChHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCCchh--hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCC
Confidence 999999999999987533 35678888888765322 235689999999999988876666678999999999999976
Q ss_pred ccchHHHHHHHH-cCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHH
Q 037446 241 NYAYCTAIRELM-SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEI 319 (1165)
Q Consensus 241 ~~~~~~~l~~L~-~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i 319 (1165)
. .+...+..+. .+....|+++||||+++. .++...+ ....+ .....+ -+....+...
T Consensus 153 ~-~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~wl---~~~~~--~~~~rp-------v~l~~~~~~~-------- 210 (720)
T PRK00254 153 Y-DRGATLEMILTHMLGRAQILGLSATVGNA-EELAEWL---NAELV--VSDWRP-------VKLRKGVFYQ-------- 210 (720)
T ss_pred c-cchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHHHh---CCccc--cCCCCC-------CcceeeEecC--------
Confidence 4 4444444444 345668999999999764 3333222 11100 000000 0000000000
Q ss_pred HHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCch
Q 037446 320 NNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIR 399 (1165)
Q Consensus 320 ~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~ 399 (1165)
+ +.+ + ..+..
T Consensus 211 ------------------~------------~~~------~----------------------------------~~~~~ 220 (720)
T PRK00254 211 ------------------G------------FLF------W----------------------------------EDGKI 220 (720)
T ss_pred ------------------C------------eee------c----------------------------------cCcch
Confidence 0 000 0 00000
Q ss_pred HHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHH
Q 037446 400 PAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIM 479 (1165)
Q Consensus 400 ~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~ 479 (1165)
.. ....+...+.+... .+.++||||++++.|+.++
T Consensus 221 ---------------~~--------------------------~~~~~~~~~~~~i~----~~~~vLVF~~sr~~~~~~a 255 (720)
T PRK00254 221 ---------------ER--------------------------FPNSWESLVYDAVK----KGKGALVFVNTRRSAEKEA 255 (720)
T ss_pred ---------------hc--------------------------chHHHHHHHHHHHH----hCCCEEEEEcChHHHHHHH
Confidence 00 00011111222222 3679999999999999888
Q ss_pred HHHHhcCC-Ccc----------------------ceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccc
Q 037446 480 NALATIGD-LVK----------------------ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGL 536 (1165)
Q Consensus 480 ~~L~~~g~-~i~----------------------~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGL 536 (1165)
..|..... .+. .....+..++.+|+||++++|..+++.|++|.++|||||+++++||
T Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gv 335 (720)
T PRK00254 256 LELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGI 335 (720)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhc
Confidence 77743210 000 0000122346788999999999999999999999999999999999
Q ss_pred cccCCCEEEE-------eccC-CCHHHHHHHHhhcCCCC---CCccceecChh
Q 037446 537 DIMEVDLVIC-------FDAN-VSPLRMIQRMGRTGRKH---DGRIPHIFKPE 578 (1165)
Q Consensus 537 DIp~vd~VI~-------~D~p-~S~~~yiQriGRagR~G---qGkiv~v~~~d 578 (1165)
|+|++++||+ ++.| .+...|+||+|||||.| .|.+++++..+
T Consensus 336 nipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 336 NLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred CCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 9999999995 4443 35779999999999987 47777777643
No 54
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.3e-32 Score=344.03 Aligned_cols=307 Identities=19% Similarity=0.230 Sum_probs=219.7
Q ss_pred CCCChHHHHHHHHHhhc-------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCC
Q 037446 107 NVPVRDYQFAITKTALF-------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGI 179 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~-------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~ 179 (1165)
+++|+++|..++..+.. .+.|++++||||||++|+++++..+. .+.+++|++||++|+.|+++.+++++..
T Consensus 259 ~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--~g~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 259 PFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--AGYQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred CCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 45788999999998876 27999999999999999999988775 3568999999999999999999999866
Q ss_pred CCceEEEEeCCCChHHHHhh----cC-CccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcC
Q 037446 180 PQEWTIDMTGQISPTKRASF----WK-TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV 254 (1165)
Q Consensus 180 ~~~~v~~l~G~~~~~~~~~l----~~-~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~ 254 (1165)
.+..+..++|+.+...+... .. .++|+|+||+.+.. .+.+.++++|||||+|++.. ... ..+...
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~--~qr---~~l~~~ 406 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGV--EQR---LALREK 406 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhH--HHH---HHHHhc
Confidence 56788999999986554332 22 48999999988754 34578899999999999853 221 233344
Q ss_pred CCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHH
Q 037446 255 PVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL 334 (1165)
Q Consensus 255 ~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl 334 (1165)
....++|+|||||......+. ....+.++.+.-... ....+....
T Consensus 407 ~~~~~iL~~SATp~prtl~~~-~~g~~~~s~i~~~p~---------~r~~i~~~~------------------------- 451 (681)
T PRK10917 407 GENPHVLVMTATPIPRTLAMT-AYGDLDVSVIDELPP---------GRKPITTVV------------------------- 451 (681)
T ss_pred CCCCCEEEEeCCCCHHHHHHH-HcCCCceEEEecCCC---------CCCCcEEEE-------------------------
Confidence 455789999999964321110 000000000000000 000000000
Q ss_pred hhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccc
Q 037446 335 SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSF 414 (1165)
Q Consensus 335 ~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~ 414 (1165)
T Consensus 452 -------------------------------------------------------------------------------- 451 (681)
T PRK10917 452 -------------------------------------------------------------------------------- 451 (681)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCch--------HHHHHHHHHHHhcC
Q 037446 415 ARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFR--------GSVRDIMNALATIG 486 (1165)
Q Consensus 415 ~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr--------~~ae~L~~~L~~~g 486 (1165)
....+...+++.+.+... .+.+++|||+.. ..++.+++.|....
T Consensus 452 ------------------------~~~~~~~~~~~~i~~~~~----~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~ 503 (681)
T PRK10917 452 ------------------------IPDSRRDEVYERIREEIA----KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAF 503 (681)
T ss_pred ------------------------eCcccHHHHHHHHHHHHH----cCCcEEEEEcccccccchhHHHHHHHHHHHHHHC
Confidence 000111223333333333 578999999854 34567777777653
Q ss_pred CCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCC-CHHHHHHHHhhcCC
Q 037446 487 DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV-SPLRMIQRMGRTGR 565 (1165)
Q Consensus 487 ~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~-S~~~yiQriGRagR 565 (1165)
+.+++..+|| +|++++|.+++++|++|+.+|||||+++++|||+|++++||++++|. ....|.|++||+||
T Consensus 504 ~~~~v~~lHG--------~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR 575 (681)
T PRK10917 504 PELRVGLLHG--------RMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGR 575 (681)
T ss_pred CCCcEEEEeC--------CCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccC
Confidence 2256666665 89999999999999999999999999999999999999999999996 57889999999999
Q ss_pred CC-CCccceecC
Q 037446 566 KH-DGRIPHIFK 576 (1165)
Q Consensus 566 ~G-qGkiv~v~~ 576 (1165)
.| +|.+++++.
T Consensus 576 ~g~~g~~ill~~ 587 (681)
T PRK10917 576 GAAQSYCVLLYK 587 (681)
T ss_pred CCCceEEEEEEC
Confidence 99 588888874
No 55
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.8e-32 Score=347.22 Aligned_cols=306 Identities=20% Similarity=0.235 Sum_probs=218.3
Q ss_pred CCChHHHHHHHHHhhc-------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCC
Q 037446 108 VPVRDYQFAITKTALF-------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIP 180 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~ 180 (1165)
+++.+.|..++..+.. .+.|++++||+|||.+|+.+++..+.. +.+++|++||++|+.|+++.|+++++..
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--g~qvlvLvPT~~LA~Q~~~~f~~~~~~~ 527 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--GKQVAVLVPTTLLAQQHFETFKERFANF 527 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--CCeEEEEeCcHHHHHHHHHHHHHHhccC
Confidence 4567778888888875 489999999999999999999887754 4689999999999999999999987765
Q ss_pred CceEEEEeCCCChHHHHhh----cC-CccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCC
Q 037446 181 QEWTIDMTGQISPTKRASF----WK-TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP 255 (1165)
Q Consensus 181 ~~~v~~l~G~~~~~~~~~l----~~-~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~ 255 (1165)
+..+..++|.....++... .. .++|||+||..+ ...+.+.++++|||||+|++.. .. ...+..+.
T Consensus 528 ~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfgv--~~---~~~L~~~~ 597 (926)
T TIGR00580 528 PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFGV--KQ---KEKLKELR 597 (926)
T ss_pred CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccch--hH---HHHHHhcC
Confidence 6677888888775544332 22 489999999644 2346788999999999999743 22 23344556
Q ss_pred CCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHh
Q 037446 256 VQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335 (1165)
Q Consensus 256 ~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~ 335 (1165)
...++|+|||||.+..- ...+. +. .....+...... +
T Consensus 598 ~~~~vL~~SATpiprtl--~~~l~--g~-------------------~d~s~I~~~p~~------------------R-- 634 (926)
T TIGR00580 598 TSVDVLTLSATPIPRTL--HMSMS--GI-------------------RDLSIIATPPED------------------R-- 634 (926)
T ss_pred CCCCEEEEecCCCHHHH--HHHHh--cC-------------------CCcEEEecCCCC------------------c--
Confidence 67899999999865321 11110 00 000000000000 0
Q ss_pred hhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccch
Q 037446 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFA 415 (1165)
Q Consensus 336 ~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~ 415 (1165)
. + +..
T Consensus 635 ------------~-~-------------------------V~t------------------------------------- 639 (926)
T TIGR00580 635 ------------L-P-------------------------VRT------------------------------------- 639 (926)
T ss_pred ------------c-c-------------------------eEE-------------------------------------
Confidence 0 0 000
Q ss_pred hcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeee
Q 037446 416 RFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFI 495 (1165)
Q Consensus 416 ~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~ 495 (1165)
.+.. ... ..+.+.+..... .+.+++|||++++.++.+++.|+...+.+++..+|
T Consensus 640 -~v~~-------------------~~~--~~i~~~i~~el~----~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lH 693 (926)
T TIGR00580 640 -FVME-------------------YDP--ELVREAIRRELL----RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAH 693 (926)
T ss_pred -EEEe-------------------cCH--HHHHHHHHHHHH----cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEec
Confidence 0000 000 001111111111 36799999999999999999999864336666666
Q ss_pred cccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCC-CHHHHHHHHhhcCCCC-CCccce
Q 037446 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV-SPLRMIQRMGRTGRKH-DGRIPH 573 (1165)
Q Consensus 496 G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~-S~~~yiQriGRagR~G-qGkiv~ 573 (1165)
| +|++++|.+++++|++|+.+|||||+++++|||+|++++||+++++. ....|+||+||+||.| +|.+++
T Consensus 694 G--------~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~ail 765 (926)
T TIGR00580 694 G--------QMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYL 765 (926)
T ss_pred C--------CCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEE
Confidence 5 89999999999999999999999999999999999999999999974 6789999999999999 588888
Q ss_pred ecCh
Q 037446 574 IFKP 577 (1165)
Q Consensus 574 v~~~ 577 (1165)
++.+
T Consensus 766 l~~~ 769 (926)
T TIGR00580 766 LYPH 769 (926)
T ss_pred EECC
Confidence 7754
No 56
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.3e-32 Score=323.78 Aligned_cols=415 Identities=16% Similarity=0.193 Sum_probs=276.1
Q ss_pred CCCCCCC--CChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHHHh-CCCCeEEEEecChhHHHHHHHHH
Q 037446 102 WIYPVNV--PVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFFRW-FPDGKIVFAAPSRPLVMQQIEAC 173 (1165)
Q Consensus 102 ~~~Pt~I--Qlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L~~-~~~~rvLILvPtr~La~Q~~~e~ 173 (1165)
|.-|..| .|.+||+++++|+.. ..+|+.++||+|||++.+..+..+... .--+++|||||. .|+.||..+|
T Consensus 196 ~~vPg~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~ 274 (923)
T KOG0387|consen 196 FKVPGFIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEF 274 (923)
T ss_pred ccccHHHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHH
Confidence 4444433 488999999999986 579999999999999877766555433 233689999999 9999999999
Q ss_pred HHHhCCCCceEEEEeCCCCh---------HHHHh-----hcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 174 HNIVGIPQEWTIDMTGQISP---------TKRAS-----FWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 174 ~kl~g~~~~~v~~l~G~~~~---------~~~~~-----l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
.+| .+...+..++|.... ..+.. ......|+|+||+.+.-. ...+.-..|+|+|+||+|++.
T Consensus 275 ~~w--~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~Ir 350 (923)
T KOG0387|consen 275 QTW--WPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIR 350 (923)
T ss_pred HHh--CcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCccccc
Confidence 999 456677777766552 11111 112467999999988653 223445679999999999999
Q ss_pred CccchHHHHHHHHcCCCCCeEEEEccCC-CCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccc-----
Q 037446 240 GNYAYCTAIRELMSVPVQLRILALTATP-GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMG----- 313 (1165)
Q Consensus 240 ~~~~~~~~l~~L~~~~~~~riL~LSATP-~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~----- 313 (1165)
+ .-.++...+..+... +.|.||||| .|+..++++|++..++..+.... .|......++...-.
T Consensus 351 N--pns~islackki~T~-~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~--------~F~~~f~~pI~~GgyaNAs~ 419 (923)
T KOG0387|consen 351 N--PNSKISLACKKIRTV-HRIILSGTPIQNNLTELWSLFDFVFPGKLGTLP--------VFQQNFEHPINRGGYANASP 419 (923)
T ss_pred C--CccHHHHHHHhcccc-ceEEeeCccccchHHHHHHHhhhccCCcccchH--------HHHhhhhhheeccccCCCCH
Confidence 8 444555566666555 448999999 56668899998887665554322 222222233332211
Q ss_pred ---hhHHHHHHHHHHHHhhHHHHHhhhcccc-----cccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHH
Q 037446 314 ---QEAVEINNRIWEVIRPYTSRLSAIGLLQ-----NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALIT 385 (1165)
Q Consensus 314 ---~~~~~i~~~l~~~i~~~~~rl~~~~vl~-----~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~ 385 (1165)
..+......|...|.||+.|..+..+.. ..+...+|. +...+.++ |.. ...
T Consensus 420 ~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~--LT~~QR~~------------------Y~~-fl~ 478 (923)
T KOG0387|consen 420 RQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCR--LTKLQRRL------------------YQR-FLN 478 (923)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEe--ccHHHHHH------------------HHH-Hhh
Confidence 2233445567788999999988776533 112222221 11111111 111 111
Q ss_pred HHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHH----HHHHhhhccCCCChHHHHHHHHHHHhhcccCCC
Q 037446 386 LYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVK----LLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPK 461 (1165)
Q Consensus 386 l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~----~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~ 461 (1165)
.-.+..++. |-.+...-+.-. +-+|...++..-. ............+.|+..+..+|..+.. .
T Consensus 479 s~~v~~i~n--g~~~~l~Gi~iL-------rkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~k----q 545 (923)
T KOG0387|consen 479 SSEVNKILN--GKRNCLSGIDIL-------RKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKK----Q 545 (923)
T ss_pred hHHHHHHHc--CCccceechHHH-------HhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhh----C
Confidence 111222221 111000000000 0011111110000 0000111223458999999999988776 7
Q ss_pred CCeEEEEeCchHHHHHHHHHHHh-cCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCC--ceEEEEcccccccccc
Q 037446 462 HSRVIIFSNFRGSVRDIMNALAT-IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG--YNVIVATSIGEEGLDI 538 (1165)
Q Consensus 462 ~~kvIVF~~sr~~ae~L~~~L~~-~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~--~~VLVATda~~eGLDI 538 (1165)
+.++|+|.+++.+.+.|...|.. .| +.+..+.| ..+...|..++++|++++ ..+|++|.+++.|+|+
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~~~~--ysylRmDG--------tT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNL 615 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRRAKG--YSYLRMDG--------TTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNL 615 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHhcCC--ceEEEecC--------CCccchhhHHHHhhcCCCceEEEEEEeccccccccc
Confidence 88999999999999999999984 56 88888887 468889999999999876 3588999999999999
Q ss_pred cCCCEEEEeccCCCHHHHHHHHhhcCCCCCCccceecC
Q 037446 539 MEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFK 576 (1165)
Q Consensus 539 p~vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv~v~~ 576 (1165)
..++.||.|||.|||....|+.-||+|+||.+-|.||.
T Consensus 616 TgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYR 653 (923)
T KOG0387|consen 616 TGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYR 653 (923)
T ss_pred ccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEE
Confidence 99999999999999999999999999999988777774
No 57
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=6.2e-32 Score=335.81 Aligned_cols=308 Identities=19% Similarity=0.249 Sum_probs=215.5
Q ss_pred CCChHHHHHHHHHhhc-------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCC
Q 037446 108 VPVRDYQFAITKTALF-------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIP 180 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~ 180 (1165)
++|.++|.+++..+.. .+.|++++||||||++|+++++..+.. +.+++|++||++|+.|+++.++++++..
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--g~qvlilaPT~~LA~Q~~~~~~~l~~~~ 311 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--GYQVALMAPTEILAEQHYNSLRNLLAPL 311 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEECCHHHHHHHHHHHHHHHhccc
Confidence 4677788888888775 258999999999999999999888753 5689999999999999999999998765
Q ss_pred CceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCC
Q 037446 181 QEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP 255 (1165)
Q Consensus 181 ~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~ 255 (1165)
+..+..++|+.....+...+ ..++|+|+||+.+.. .+.+.++++|||||+|++.. .....+.......
T Consensus 312 gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~--~qr~~l~~~~~~~ 384 (630)
T TIGR00643 312 GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGV--EQRKKLREKGQGG 384 (630)
T ss_pred CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccH--HHHHHHHHhcccC
Confidence 67889999998876544332 247999999998754 34578899999999999754 2222222221111
Q ss_pred CCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHh
Q 037446 256 VQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335 (1165)
Q Consensus 256 ~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~ 335 (1165)
...++|+|||||....-.+ .+...+....+.... .....+....+
T Consensus 385 ~~~~~l~~SATp~prtl~l-~~~~~l~~~~i~~~p---------~~r~~i~~~~~------------------------- 429 (630)
T TIGR00643 385 FTPHVLVMSATPIPRTLAL-TVYGDLDTSIIDELP---------PGRKPITTVLI------------------------- 429 (630)
T ss_pred CCCCEEEEeCCCCcHHHHH-HhcCCcceeeeccCC---------CCCCceEEEEe-------------------------
Confidence 2568999999996532111 000000000000000 00000000000
Q ss_pred hhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccch
Q 037446 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFA 415 (1165)
Q Consensus 336 ~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~ 415 (1165)
T Consensus 430 -------------------------------------------------------------------------------- 429 (630)
T TIGR00643 430 -------------------------------------------------------------------------------- 429 (630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCch--------HHHHHHHHHHHhcCC
Q 037446 416 RFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFR--------GSVRDIMNALATIGD 487 (1165)
Q Consensus 416 ~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr--------~~ae~L~~~L~~~g~ 487 (1165)
...+...+++.+.+... .+.+++|||+.. ..++.+++.|.....
T Consensus 430 ------------------------~~~~~~~~~~~i~~~l~----~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~ 481 (630)
T TIGR00643 430 ------------------------KHDEKDIVYEFIEEEIA----KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFP 481 (630)
T ss_pred ------------------------CcchHHHHHHHHHHHHH----hCCcEEEEEccccccccchHHHHHHHHHHHHhhCC
Confidence 00011223333333332 478999999876 456677777765432
Q ss_pred CccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCC-CHHHHHHHHhhcCCC
Q 037446 488 LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV-SPLRMIQRMGRTGRK 566 (1165)
Q Consensus 488 ~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~-S~~~yiQriGRagR~ 566 (1165)
.+++..+|| +|++++|.+++++|++|+.+|||||+++++|||+|++++||++++|. +...|.|++||+||.
T Consensus 482 ~~~v~~lHG--------~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~ 553 (630)
T TIGR00643 482 KYNVGLLHG--------RMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRG 553 (630)
T ss_pred CCcEEEEeC--------CCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccC
Confidence 355666665 89999999999999999999999999999999999999999999986 688999999999999
Q ss_pred C-CCccceec
Q 037446 567 H-DGRIPHIF 575 (1165)
Q Consensus 567 G-qGkiv~v~ 575 (1165)
| +|.+++++
T Consensus 554 g~~g~~il~~ 563 (630)
T TIGR00643 554 DHQSYCLLVY 563 (630)
T ss_pred CCCcEEEEEE
Confidence 9 58888887
No 58
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.9e-32 Score=341.50 Aligned_cols=341 Identities=20% Similarity=0.228 Sum_probs=234.5
Q ss_pred CCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec
Q 037446 84 SFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161 (1165)
Q Consensus 84 sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP 161 (1165)
.|++ +|++.+++.+...+| +++++|.+++..+.. +++++++|||+|||++|.++++..+.. ++++|||+|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~------~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--~~k~v~i~P 73 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDF------ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--GLKSIYIVP 73 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCC------CCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--CCcEEEEec
Confidence 5667 899999999988776 578899999999876 789999999999999999999887653 568999999
Q ss_pred ChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCc
Q 037446 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN 241 (1165)
Q Consensus 162 tr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~ 241 (1165)
+++|+.|+.+++.++.. .+..+...+|+..... ...+.++|+|+||+++..++.++...+.++++|||||||++.+.
T Consensus 74 ~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~--~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~ 150 (674)
T PRK01172 74 LRSLAMEKYEELSRLRS-LGMRVKISIGDYDDPP--DFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDE 150 (674)
T ss_pred hHHHHHHHHHHHHHHhh-cCCeEEEEeCCCCCCh--hhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCC
Confidence 99999999999988543 3456777778765432 22357899999999999888877667889999999999999753
Q ss_pred cch----HHHHHHHHcCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHH
Q 037446 242 YAY----CTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAV 317 (1165)
Q Consensus 242 ~~~----~~~l~~L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~ 317 (1165)
.+ ...+..+.......|+++||||+.+. .++.. .+....+ ... +...... +.+.....
T Consensus 151 -~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~---wl~~~~~--~~~--------~r~vpl~-~~i~~~~~-- 212 (674)
T PRK01172 151 -DRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ---WLNASLI--KSN--------FRPVPLK-LGILYRKR-- 212 (674)
T ss_pred -CccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH---HhCCCcc--CCC--------CCCCCeE-EEEEecCe--
Confidence 32 33334444456678999999999764 22322 2211110 000 0000000 00000000
Q ss_pred HHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCC
Q 037446 318 EINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397 (1165)
Q Consensus 318 ~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g 397 (1165)
. +. .+
T Consensus 213 ------------------------------~-----------~~----------------------------------~~ 217 (674)
T PRK01172 213 ------------------------------L-----------IL----------------------------------DG 217 (674)
T ss_pred ------------------------------e-----------ee----------------------------------cc
Confidence 0 00 00
Q ss_pred chHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHH
Q 037446 398 IRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRD 477 (1165)
Q Consensus 398 ~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~ 477 (1165)
....+ ..+..++.+... .+.++||||++++.|+.
T Consensus 218 -----------------------------------------~~~~~-~~~~~~i~~~~~----~~~~vLVF~~sr~~~~~ 251 (674)
T PRK01172 218 -----------------------------------------YERSQ-VDINSLIKETVN----DGGQVLVFVSSRKNAED 251 (674)
T ss_pred -----------------------------------------ccccc-ccHHHHHHHHHh----CCCcEEEEeccHHHHHH
Confidence 00000 001222222222 46799999999999999
Q ss_pred HHHHHHhcCCCcccee---------------eecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCC
Q 037446 478 IMNALATIGDLVKATE---------------FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVD 542 (1165)
Q Consensus 478 L~~~L~~~g~~i~~~~---------------l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd 542 (1165)
++..|........... +...+.+.+|++|++++|..+++.|++|.++|||||+++++|||+|+..
T Consensus 252 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~ 331 (674)
T PRK01172 252 YAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARL 331 (674)
T ss_pred HHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceE
Confidence 9999876521111000 0012245678999999999999999999999999999999999999865
Q ss_pred EEEEec---------cCCCHHHHHHHHhhcCCCC---CCccceec
Q 037446 543 LVICFD---------ANVSPLRMIQRMGRTGRKH---DGRIPHIF 575 (1165)
Q Consensus 543 ~VI~~D---------~p~S~~~yiQriGRagR~G---qGkiv~v~ 575 (1165)
+|| .| .|.++..|.||+|||||.| .|..++++
T Consensus 332 VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~ 375 (674)
T PRK01172 332 VIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYA 375 (674)
T ss_pred EEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEe
Confidence 544 33 2578999999999999998 35544444
No 59
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=2.5e-32 Score=332.82 Aligned_cols=406 Identities=18% Similarity=0.254 Sum_probs=273.6
Q ss_pred CCChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeEEEEecChhHHHHHHHHHHHHhCCCC
Q 037446 108 VPVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIVFAAPSRPLVMQQIEACHNIVGIPQ 181 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rvLILvPtr~La~Q~~~e~~kl~g~~~ 181 (1165)
.+||+||.++++|++. +++|+++.||+|||++.+..+..+.... -.+..|||||. +-+..|.++|..|..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvpl-st~~~W~~ef~~w~~--- 444 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPL-STITAWEREFETWTD--- 444 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeeh-hhhHHHHHHHHHHhh---
Confidence 5899999999999986 7999999999999999887766655443 56789999999 788899999999974
Q ss_pred ceEEEEeCCCChHHHHh----hcC------CccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHH
Q 037446 182 EWTIDMTGQISPTKRAS----FWK------TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIREL 251 (1165)
Q Consensus 182 ~~v~~l~G~~~~~~~~~----l~~------~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L 251 (1165)
..+++++|+....+-.. ... ..+++++|+++++.+-. .+.--.|.+++|||||++++ .-+..+..+
T Consensus 445 mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN--~~~~l~~~l 520 (1373)
T KOG0384|consen 445 MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKN--DESKLYESL 520 (1373)
T ss_pred hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCc--hHHHHHHHH
Confidence 45888888876443211 111 36899999999987543 33445689999999999997 444444554
Q ss_pred HcCCCCCeEEEEccCC-CCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhH
Q 037446 252 MSVPVQLRILALTATP-GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330 (1165)
Q Consensus 252 ~~~~~~~riL~LSATP-~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~ 330 (1165)
...... ..|++|+|| .|+.+.++.|+.++.+..+....+.. .. .+.....-...|+..+.|+
T Consensus 521 ~~f~~~-~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~---~~-------------~~~~~e~~~~~L~~~L~P~ 583 (1373)
T KOG0384|consen 521 NQFKMN-HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFL---EE-------------FDEETEEQVRKLQQILKPF 583 (1373)
T ss_pred HHhccc-ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHH---Hh-------------hcchhHHHHHHHHHHhhHH
Confidence 444344 449999999 56667777777666544433221110 01 1223445567788888888
Q ss_pred HHHHhhhccccc--ccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhC--CchHHHHHHH
Q 037446 331 TSRLSAIGLLQN--RDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSH--GIRPAYEMLE 406 (1165)
Q Consensus 331 ~~rl~~~~vl~~--~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~--g~~~~~~~L~ 406 (1165)
+.|....++... .....+.-.++..++.+|++ .+.. .-...|... |.......+.
T Consensus 584 ~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk--------------------~ILt-kN~~~LtKG~~g~~~~lLNim 642 (1373)
T KOG0384|consen 584 LLRRLKKDVEKSLPPKEETILRVELSDLQKQYYK--------------------AILT-KNFSALTKGAKGSTPSLLNIM 642 (1373)
T ss_pred HHHHHHhhhccCCCCCcceEEEeehhHHHHHHHH--------------------HHHH-hhHHHHhccCCCCCchHHHHH
Confidence 888766654322 11122222222222222222 1111 111112211 1112222222
Q ss_pred HHHhhccchhcccchhhHH---HHH-----HHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHH
Q 037446 407 EKLKQGSFARFMSKNEDIR---KVK-----LLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDI 478 (1165)
Q Consensus 407 ~~~~~~~~~~ll~~~~~~~---~v~-----~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L 478 (1165)
..++..+...++-...... ... ..++. ....++|+--|-++|.++.. .|+|||||++.+.+.+.|
T Consensus 643 mELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~---lI~sSGKlVLLDKLL~rLk~----~GHrVLIFSQMVRmLDIL 715 (1373)
T KOG0384|consen 643 MELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQA---LIQSSGKLVLLDKLLPRLKE----GGHRVLIFSQMVRMLDIL 715 (1373)
T ss_pred HHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHH---HHHhcCcEEeHHHHHHHHhc----CCceEEEhHHHHHHHHHH
Confidence 3333333222221111100 000 11111 12347788777777766654 689999999999999999
Q ss_pred HHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHh---cCCceEEEEcccccccccccCCCEEEEeccCCCHHH
Q 037446 479 MNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR---AGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555 (1165)
Q Consensus 479 ~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr---~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~ 555 (1165)
+++|...+ ++...+.| ++..+.|+.+|+.|. +..+.+|+||.|||.|||+..+++||.||..|||..
T Consensus 716 ~eYL~~r~--ypfQRLDG--------svrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQN 785 (1373)
T KOG0384|consen 716 AEYLSLRG--YPFQRLDG--------SVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQN 785 (1373)
T ss_pred HHHHHHcC--CcceeccC--------CcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcch
Confidence 99999999 88778877 678899999999998 456889999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCccceecC
Q 037446 556 MIQRMGRTGRKHDGRIPHIFK 576 (1165)
Q Consensus 556 yiQriGRagR~GqGkiv~v~~ 576 (1165)
.+|++.||+|+||.+.|.||.
T Consensus 786 DLQAqARaHRIGQkk~VnVYR 806 (1373)
T KOG0384|consen 786 DLQAQARAHRIGQKKHVNVYR 806 (1373)
T ss_pred HHHHHHHHHhhcccceEEEEE
Confidence 999999999999998777774
No 60
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=2.3e-31 Score=317.21 Aligned_cols=340 Identities=22% Similarity=0.301 Sum_probs=236.5
Q ss_pred CCCCCCChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhC
Q 037446 104 YPVNVPVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVG 178 (1165)
Q Consensus 104 ~Pt~IQlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g 178 (1165)
....+++|+||.+++..+.. +.+++++|||+|||++++..+... ..++|||||+++|+.||.+.+.+.++
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-----~~~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-----KRSTLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-----cCCEEEEECcHHHHHHHHHHHHHhcC
Confidence 34457899999999999986 579999999999999999988776 34499999999999999988888766
Q ss_pred CCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCC
Q 037446 179 IPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL 258 (1165)
Q Consensus 179 ~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~ 258 (1165)
.. ..++.+.|+.... ....|.|+|++++........+....|++||||||||+.+. .|......+.. .
T Consensus 106 ~~-~~~g~~~~~~~~~------~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~-~~~~~~~~~~~----~ 173 (442)
T COG1061 106 LN-DEIGIYGGGEKEL------EPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP-SYRRILELLSA----A 173 (442)
T ss_pred Cc-cccceecCceecc------CCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH-HHHHHHHhhhc----c
Confidence 53 2344455544321 11479999999999853222344557999999999999985 66444444433 2
Q ss_pred e-EEEEccCCCCCh-HHHHHHHHhhccccccccCCchhhhh-hhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHh
Q 037446 259 R-ILALTATPGSKQ-QTIQHIIDNLYISTLEYRNESDQDVS-SYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335 (1165)
Q Consensus 259 r-iL~LSATP~~~~-~~l~~Li~~L~is~i~~~~~~~~~i~-~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~ 335 (1165)
+ +|||||||.+.+ ..+..++..++ .+.+.......+. .|+.......+.+.........+.........++.
T Consensus 174 ~~~LGLTATp~R~D~~~~~~l~~~~g--~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~--- 248 (442)
T COG1061 174 YPRLGLTATPEREDGGRIGDLFDLIG--PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLR--- 248 (442)
T ss_pred cceeeeccCceeecCCchhHHHHhcC--CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhh---
Confidence 3 899999998766 45666665543 2333333333444 56666666666654433332222211111000000
Q ss_pred hhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccch
Q 037446 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFA 415 (1165)
Q Consensus 336 ~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~ 415 (1165)
..+.
T Consensus 249 -----------------------------------------------------------~~~~----------------- 252 (442)
T COG1061 249 -----------------------------------------------------------ARGT----------------- 252 (442)
T ss_pred -----------------------------------------------------------hhhh-----------------
Confidence 0000
Q ss_pred hcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeee
Q 037446 416 RFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFI 495 (1165)
Q Consensus 416 ~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~ 495 (1165)
................|+..+...+..+. .+.++||||.+..++..++..|...| + +..++
T Consensus 253 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~lif~~~~~~a~~i~~~~~~~~--~-~~~it 313 (442)
T COG1061 253 -----------LRAENEARRIAIASERKIAAVRGLLLKHA-----RGDKTLIFASDVEHAYEIAKLFLAPG--I-VEAIT 313 (442)
T ss_pred -----------hhHHHHHHHHhhccHHHHHHHHHHHHHhc-----CCCcEEEEeccHHHHHHHHHHhcCCC--c-eEEEE
Confidence 00000000011122345556666665431 47899999999999999999998776 4 55666
Q ss_pred cccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC
Q 037446 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD 568 (1165)
Q Consensus 496 G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq 568 (1165)
| ..+..+|.+++++|+.|++++||++.++.+|+|+|+++++|+..++.|+..|+||+||+.|...
T Consensus 314 ~--------~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~ 378 (442)
T COG1061 314 G--------ETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAE 378 (442)
T ss_pred C--------CCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCC
Confidence 5 6799999999999999999999999999999999999999999999999999999999999543
No 61
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.6e-31 Score=340.89 Aligned_cols=306 Identities=19% Similarity=0.221 Sum_probs=216.6
Q ss_pred CCChHHHHHHHHHhhc-------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCC
Q 037446 108 VPVRDYQFAITKTALF-------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIP 180 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~ 180 (1165)
+++.+.|.+++..++. .+.|++++||+|||.+|+.+++..+. .+.+++||+||++|+.|+++.|.+.++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~ 676 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--NHKQVAVLVPTTLLAQQHYDNFRDRFANW 676 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHhhccC
Confidence 4566777888887765 58999999999999999988876654 45789999999999999999999877654
Q ss_pred CceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCC
Q 037446 181 QEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP 255 (1165)
Q Consensus 181 ~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~ 255 (1165)
+..+..++|..+..++...+ ..++|+|+||+.+. ..+.+.++++|||||+|++.. .. ...+..++
T Consensus 677 ~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG~--~~---~e~lk~l~ 746 (1147)
T PRK10689 677 PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFGV--RH---KERIKAMR 746 (1147)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcch--hH---HHHHHhcC
Confidence 56677788887766554433 35899999997553 245678899999999999843 22 23445566
Q ss_pred CCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHh
Q 037446 256 VQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335 (1165)
Q Consensus 256 ~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~ 335 (1165)
...++|+|||||.+....+. ...+ .+ ...+..+...
T Consensus 747 ~~~qvLl~SATpiprtl~l~--~~gl-------------------~d--~~~I~~~p~~--------------------- 782 (1147)
T PRK10689 747 ADVDILTLTATPIPRTLNMA--MSGM-------------------RD--LSIIATPPAR--------------------- 782 (1147)
T ss_pred CCCcEEEEcCCCCHHHHHHH--HhhC-------------------CC--cEEEecCCCC---------------------
Confidence 78899999999965432111 0000 00 0011100000
Q ss_pred hhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccch
Q 037446 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFA 415 (1165)
Q Consensus 336 ~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~ 415 (1165)
...... +
T Consensus 783 -----------r~~v~~-------~------------------------------------------------------- 789 (1147)
T PRK10689 783 -----------RLAVKT-------F------------------------------------------------------- 789 (1147)
T ss_pred -----------CCCceE-------E-------------------------------------------------------
Confidence 000000 0
Q ss_pred hcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeee
Q 037446 416 RFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFI 495 (1165)
Q Consensus 416 ~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~ 495 (1165)
.. . . . .......++.++. .+.+++|||++++.++.+++.|....+.+++..+|
T Consensus 790 --~~-----------------~-~-~-~~~~k~~il~el~-----r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lH 842 (1147)
T PRK10689 790 --VR-----------------E-Y-D-SLVVREAILREIL-----RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 842 (1147)
T ss_pred --EE-----------------e-c-C-cHHHHHHHHHHHh-----cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEe
Confidence 00 0 0 0 0000011111221 26789999999999999999999874336666666
Q ss_pred cccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccC-CCHHHHHHHHhhcCCCCC-Cccce
Q 037446 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN-VSPLRMIQRMGRTGRKHD-GRIPH 573 (1165)
Q Consensus 496 G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p-~S~~~yiQriGRagR~Gq-Gkiv~ 573 (1165)
| +|++++|.+++.+|++|+++|||||+++++|||+|++++||..++. ++...|+||+||+||.|+ |.+++
T Consensus 843 G--------~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~l 914 (1147)
T PRK10689 843 G--------QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL 914 (1147)
T ss_pred C--------CCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEE
Confidence 6 8999999999999999999999999999999999999999976654 567889999999999994 87777
Q ss_pred ecCh
Q 037446 574 IFKP 577 (1165)
Q Consensus 574 v~~~ 577 (1165)
++..
T Consensus 915 l~~~ 918 (1147)
T PRK10689 915 LTPH 918 (1147)
T ss_pred EeCC
Confidence 7643
No 62
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=2.4e-32 Score=308.59 Aligned_cols=494 Identities=13% Similarity=0.118 Sum_probs=337.5
Q ss_pred CChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhC-CC---Cce
Q 037446 109 PVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVG-IP---QEW 183 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g-~~---~~~ 183 (1165)
....+|.++++.+.. +++++...|.+||.+++.+....++...+....+++.|++++++++.+.+.-.+. ++ ...
T Consensus 286 ~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~ 365 (1034)
T KOG4150|consen 286 SGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAY 365 (1034)
T ss_pred chhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhcce
Confidence 467789999999887 8899999999999999999998888777888899999999999987765532221 11 222
Q ss_pred EEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHc----CccCCCCccEEEEcccccccCcc--chHHHHHHHHcC---
Q 037446 184 TIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS----GTCLMKYLVCLVIDEAHRATGNY--AYCTAIRELMSV--- 254 (1165)
Q Consensus 184 v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~----~~~~l~~~~lVVIDEAHrl~~~~--~~~~~l~~L~~~--- 254 (1165)
+-...|.....++...+.+.+++++.|.+......- +..++-...++++||+|-++... ..+.+++++.++
T Consensus 366 V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~ 445 (1034)
T KOG4150|consen 366 VEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKG 445 (1034)
T ss_pred eecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHH
Confidence 334556666667777788999999999998875532 33344556789999999988632 244566666642
Q ss_pred ---CCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHH
Q 037446 255 ---PVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYT 331 (1165)
Q Consensus 255 ---~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~ 331 (1165)
....+++-.+||.....+...++++ ++.+. .+.....+..+.
T Consensus 446 F~~~~~~~~~~~~~~~K~~~~~~~~~~~---~~E~~-------------------Li~~DGSPs~~K------------- 490 (1034)
T KOG4150|consen 446 FEASINMGVYDGDTPYKDRTRLRSELAN---LSELE-------------------LVTIDGSPSSEK------------- 490 (1034)
T ss_pred HHhhcCcceEeCCCCcCCHHHHHHHhcC---CcceE-------------------EEEecCCCCccc-------------
Confidence 4567889999998776665555432 22222 222211111100
Q ss_pred HHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhh
Q 037446 332 SRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQ 411 (1165)
Q Consensus 332 ~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~ 411 (1165)
.+..|.|..+ |...
T Consensus 491 ------------~~V~WNP~~~---------------P~~~--------------------------------------- 504 (1034)
T KOG4150|consen 491 ------------LFVLWNPSAP---------------PTSK--------------------------------------- 504 (1034)
T ss_pred ------------eEEEeCCCCC---------------Ccch---------------------------------------
Confidence 1111222111 0000
Q ss_pred ccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhc----CC
Q 037446 412 GSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI----GD 487 (1165)
Q Consensus 412 ~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~----g~ 487 (1165)
...+.|+.....++.+... .+.++|.||..|+.|+.+....+.. ++
T Consensus 505 --------------------------~~~~~~i~E~s~~~~~~i~----~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~ 554 (1034)
T KOG4150|consen 505 --------------------------SEKSSKVVEVSHLFAEMVQ----HGLRCIAFCPSRKLCELVLCLTREILAETAP 554 (1034)
T ss_pred --------------------------hhhhhHHHHHHHHHHHHHH----cCCcEEEeccHHHHHHHHHHHHHHHHHHhhH
Confidence 0012333334444444444 5889999999999999888766543 32
Q ss_pred CccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCC
Q 037446 488 LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH 567 (1165)
Q Consensus 488 ~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~G 567 (1165)
.+ +..+ ..+.||.+.++|+.+...+..|++.-+|||.+++.||||..++.|++.+.|.|.+.+.|+.|||||++
T Consensus 555 ~L-V~~i-----~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRN 628 (1034)
T KOG4150|consen 555 HL-VEAI-----TSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRN 628 (1034)
T ss_pred HH-HHHH-----HhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccC
Confidence 11 1111 24567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceec---Ch-hHHHHHHHHHHHHh---------cCCcccccccccccHHHhhcCHHHHHHHHHHcCCC--------
Q 037446 568 DGRIPHIF---KP-EVQFVELSIEQYVS---------RGKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPT-------- 626 (1165)
Q Consensus 568 qGkiv~v~---~~-d~~~~~~~Ie~~l~---------~~~~l~~~~~~~~~~f~~~l~~~e~~~l~~~f~~~-------- 626 (1165)
+..+.+++ .| |..++. .-+..+. ..+.+....+.++.+|+-.++.... .+||+..
T Consensus 629 k~SLavyva~~~PVDQ~Y~~-HP~~l~~~pN~EL~LD~~N~~iL~~HlQCAA~ELPIN~~~D---~q~Fg~~~lr~IC~~ 704 (1034)
T KOG4150|consen 629 KPSLAVYVAFLGPVDQYYMS-HPDKLFGSPNEELHLDSQNKHVLMQHLQCAALELPINLQYD---QQHFGSGELRNICFL 704 (1034)
T ss_pred CCceEEEEEeccchhhHhhc-CcHHHhCCCcceeEEecccHHHHHHHHhHHhhcCccccchh---hhhcccHHHHhhHHh
Confidence 76532222 22 333222 2222222 1223333456677777765554433 3455541
Q ss_pred ----CCCCCCcccccccccCCCccceeeecc-----ccccchHHHHHhhhcCC--ccCCCCc--------ceeeecccCC
Q 037446 627 ----SDSTWRPSLIAFPHFQALPSRVHKVMH-----SFRTGMLIDMMQHLQGL--TFSRDDR--------TFVEDEVSSD 687 (1165)
Q Consensus 627 ----k~~~~rp~L~~f~~~~~~p~~~~~~~~-----~~~t~~f~~~~~~~~~~--~~~~~~~--------~~~~~e~~~~ 687 (1165)
-++.+++. ..|.+|...+-.+.-+.. .+.|+.-+..+++++.+ .|+.|++ +|+.++|+..
T Consensus 705 ~L~~~~dsY~~~-~~yLP~P~~~VriRs~~ED~F~~VDvTN~kN~IlEeiE~sR~~fT~YeGaiy~~QG~~ylv~~lNi~ 783 (1034)
T KOG4150|consen 705 SLDPSRDSYSRI-WNYLPRPKNPVRIRSIREDEFVRVDVTNKKNDILEEIEESRAFFTVYEGAIYMNQGRNYLVTSLNIK 783 (1034)
T ss_pred hcCccccccccc-cccCCCCCCceEeeeeccceEEEEEecCCchhHHHHHhhhhheeEeecccEEEecCcceeeeecCch
Confidence 12222221 124444444322222211 34578888888888887 7788877 9999999999
Q ss_pred CccCcccccccccccccCCCccccccCCccccccccccccCCCCCCccCCCCccccccccceEEEEecceEE
Q 037446 688 KHLGLQTVEPCETDERDNFHGTKKVTDSELSTRTLGTQENHSMPQSCCKSPAAHAYLFGSDFISVDALGKVL 759 (1165)
Q Consensus 688 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (1165)
+|++ .+.++.|||.|-|||||||||...++++ +..+|.+..| ||.++++.-||||.=
T Consensus 784 eR~a-----~~~~VDVdW~T~QRDFTDVDP~~~~~~~---------~~~~S~~~~Y-FGa~K~T~~VFGfFK 840 (1034)
T KOG4150|consen 784 ERVA-----LCELVDVDWYTRQRDFTDVDPTGGDTAY---------PVKASKPTPY-FGACKVTTKVFGFFK 840 (1034)
T ss_pred hhee-----eeEEecceeeeccccccccCCcccceee---------eccCCCCCcc-eeeeEEEEEEEEEEE
Confidence 9999 9999999999999999999999999999 6667789999 999999999999964
No 63
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.98 E-value=3.2e-31 Score=325.27 Aligned_cols=328 Identities=21% Similarity=0.263 Sum_probs=241.9
Q ss_pred cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCC-C-----CeEEEEe
Q 037446 88 SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFP-D-----GKIVFAA 160 (1165)
Q Consensus 88 ~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~-~-----~rvLILv 160 (1165)
-|++.+.+.+... |..||+. |..++..+.. +|+||++|||+|||++|++|++..+.... + -.+|+|.
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~-----Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIs 80 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPP-----QRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYIS 80 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHH-----HHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeC
Confidence 6889999999888 8776654 5667777765 89999999999999999999998886541 1 2699999
Q ss_pred cChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcC-CccEEEEcHHHHHHHHHcCcc--CCCCccEEEEccccc
Q 037446 161 PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK-TKRVFFVTPQVLEKDIQSGTC--LMKYLVCLVIDEAHR 237 (1165)
Q Consensus 161 Ptr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~-~~dIlVaTpq~L~~~l~~~~~--~l~~~~lVVIDEAHr 237 (1165)
|.++|..++.+.+..++...+..+.+-+|+++..+++...+ .++|+|+||++|.-++....+ .+.++.+|||||.|.
T Consensus 81 PLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 81 PLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh
Confidence 99999999999999987666666788899999888766554 579999999999988765332 478899999999999
Q ss_pred ccCc-cc--hHHHHHHHHcCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccC--ceEEEEecc
Q 037446 238 ATGN-YA--YCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNR--KIELIEVEM 312 (1165)
Q Consensus 238 l~~~-~~--~~~~l~~L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~--~~~~i~v~~ 312 (1165)
+.++ .+ ..-.+.++..+..+.|.||||||..+..+-. +|+... ..+++.+..
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~va-----------------------rfL~g~~~~~~Iv~~~~ 217 (814)
T COG1201 161 LAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVA-----------------------KFLVGFGDPCEIVDVSA 217 (814)
T ss_pred hhccccchhhhhhHHHHHhhCcccEEEeehhccCCHHHHH-----------------------HHhcCCCCceEEEEccc
Confidence 9763 12 3334556666555889999999997543322 222222 233333332
Q ss_pred chhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 037446 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392 (1165)
Q Consensus 313 ~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~l 392 (1165)
.... +...+.|... +...
T Consensus 218 ~k~~---------------------------~i~v~~p~~~--------------~~~~--------------------- 235 (814)
T COG1201 218 AKKL---------------------------EIKVISPVED--------------LIYD--------------------- 235 (814)
T ss_pred CCcc---------------------------eEEEEecCCc--------------cccc---------------------
Confidence 2100 1111111000 0000
Q ss_pred HhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCch
Q 037446 393 LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFR 472 (1165)
Q Consensus 393 l~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr 472 (1165)
..-...+.+.+.+..+ ....+|||+|+|
T Consensus 236 ------------------------------------------------~~~~~~~~~~i~~~v~----~~~ttLIF~NTR 263 (814)
T COG1201 236 ------------------------------------------------EELWAALYERIAELVK----KHRTTLIFTNTR 263 (814)
T ss_pred ------------------------------------------------cchhHHHHHHHHHHHh----hcCcEEEEEeCh
Confidence 0001122233333332 245899999999
Q ss_pred HHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCC
Q 037446 473 GSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVS 552 (1165)
Q Consensus 473 ~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S 552 (1165)
..++.++..|++.+. . ....+||+++.++|..+.++|++|+.+++|||+.++.|||+.+++.||++..|.+
T Consensus 264 ~~aE~l~~~L~~~~~--~-------~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~s 334 (814)
T COG1201 264 SGAERLAFRLKKLGP--D-------IIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKS 334 (814)
T ss_pred HHHHHHHHHHHHhcC--C-------ceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHH
Confidence 999999999998863 1 1224567999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCC
Q 037446 553 PLRMIQRMGRTGRKH 567 (1165)
Q Consensus 553 ~~~yiQriGRagR~G 567 (1165)
...++||+||+|+.-
T Consensus 335 V~r~lQRiGRsgHr~ 349 (814)
T COG1201 335 VNRFLQRIGRAGHRL 349 (814)
T ss_pred HHHHhHhcccccccc
Confidence 999999999999875
No 64
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.98 E-value=3.7e-31 Score=333.36 Aligned_cols=349 Identities=18% Similarity=0.187 Sum_probs=253.6
Q ss_pred CCccCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecCh
Q 037446 85 FDESLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163 (1165)
Q Consensus 85 Fee~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr 163 (1165)
|.......+..++...|... |+.||.+++..+.. +|+||..+||||||.+|++||++.+...+..++|||.||+
T Consensus 51 ~~~~~~~~l~~~l~~~g~~~-----lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtn 125 (851)
T COG1205 51 FPELRDESLKSALVKAGIER-----LYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTN 125 (851)
T ss_pred chhhhhhHHHHHHHHhcccc-----ccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechh
Confidence 44355666688888888765 99999999999987 7999999999999999999999999988888999999999
Q ss_pred hHHHHHHHHHHHHhCCC--CceEEEEeCCCChHHHH-hhcCCccEEEEcHHHHHHHHHc----CccCCCCccEEEEcccc
Q 037446 164 PLVMQQIEACHNIVGIP--QEWTIDMTGQISPTKRA-SFWKTKRVFFVTPQVLEKDIQS----GTCLMKYLVCLVIDEAH 236 (1165)
Q Consensus 164 ~La~Q~~~e~~kl~g~~--~~~v~~l~G~~~~~~~~-~l~~~~dIlVaTpq~L~~~l~~----~~~~l~~~~lVVIDEAH 236 (1165)
+|+.+|.+.|+++.... ......++|+....++. .+.+.++|++|||+||...+.. +.+.+.++++||+||+|
T Consensus 126 ALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH 205 (851)
T COG1205 126 ALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH 205 (851)
T ss_pred hhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce
Confidence 99999999999987543 36778899999998884 4556789999999999986543 45567789999999999
Q ss_pred cccCccc--hHHHHHHHHc----CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEe
Q 037446 237 RATGNYA--YCTAIRELMS----VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEV 310 (1165)
Q Consensus 237 rl~~~~~--~~~~l~~L~~----~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v 310 (1165)
.+.+-++ .+.++++++. .+.+.++|++|||..+..+...++++...-..+.. . .........+..
T Consensus 206 tYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~--~-------g~~~~~~~~~~~ 276 (851)
T COG1205 206 TYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDE--D-------GSPRGLRYFVRR 276 (851)
T ss_pred eccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccC--C-------CCCCCceEEEEe
Confidence 9987433 4556666654 45578999999999988777777654332111000 0 000000000000
Q ss_pred ccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 037446 311 EMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR 390 (1165)
Q Consensus 311 ~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~ 390 (1165)
... .....
T Consensus 277 ~p~--------------------------------------~~~~~---------------------------------- 284 (851)
T COG1205 277 EPP--------------------------------------IRELA---------------------------------- 284 (851)
T ss_pred CCc--------------------------------------chhhh----------------------------------
Confidence 000 00000
Q ss_pred HHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeC
Q 037446 391 RLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSN 470 (1165)
Q Consensus 391 ~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~ 470 (1165)
.+ ....+...+..++..... .+.++|+|+.
T Consensus 285 -----~~-----------------------------------------~r~s~~~~~~~~~~~~~~----~~~~tL~F~~ 314 (851)
T COG1205 285 -----ES-----------------------------------------IRRSALAELATLAALLVR----NGIQTLVFFR 314 (851)
T ss_pred -----hh-----------------------------------------cccchHHHHHHHHHHHHH----cCceEEEEEe
Confidence 00 000112222222222222 5889999999
Q ss_pred chHHHHHHHHHHH----hcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEE
Q 037446 471 FRGSVRDIMNALA----TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546 (1165)
Q Consensus 471 sr~~ae~L~~~L~----~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~ 546 (1165)
++..++.+..... ..+... ......++++|...+|.++...|+.|++.++++|.+++.||||.+++.||+
T Consensus 315 sr~~~e~~~~~~~~~~~~~~~~l------~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~ 388 (851)
T COG1205 315 SRKQVELLYLSPRRRLVREGGKL------LDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIA 388 (851)
T ss_pred hhhhhhhhhhchhHHHhhcchhh------hhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhh
Confidence 9999999974333 222000 011123567999999999999999999999999999999999999999999
Q ss_pred eccCC-CHHHHHHHHhhcCCCCCCccceec
Q 037446 547 FDANV-SPLRMIQRMGRTGRKHDGRIPHIF 575 (1165)
Q Consensus 547 ~D~p~-S~~~yiQriGRagR~GqGkiv~v~ 575 (1165)
...|. +...++||.||+||.+++.+++++
T Consensus 389 ~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v 418 (851)
T COG1205 389 YGYPGVSVLSFRQRAGRAGRRGQESLVLVV 418 (851)
T ss_pred cCCCCchHHHHHHhhhhccCCCCCceEEEE
Confidence 99999 999999999999999975544443
No 65
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.97 E-value=1.2e-30 Score=338.03 Aligned_cols=318 Identities=20% Similarity=0.240 Sum_probs=207.3
Q ss_pred EEcCCCchHHHHHHHHHHHHHHhC-----------CCCeEEEEecChhHHHHHHHHHHHHh----------C--CCCceE
Q 037446 128 VALPTGLGKTLIAAVVIYNFFRWF-----------PDGKIVFAAPSRPLVMQQIEACHNIV----------G--IPQEWT 184 (1165)
Q Consensus 128 l~a~TGsGKTL~a~lpil~~L~~~-----------~~~rvLILvPtr~La~Q~~~e~~kl~----------g--~~~~~v 184 (1165)
|++|||||||++|.+|++..+... .+.++|||+|+++|+.|+.+.++..+ | ...+.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999998877532 23589999999999999999887521 1 135678
Q ss_pred EEEeCCCChHHHHhhc-CCccEEEEcHHHHHHHHHcC-ccCCCCccEEEEcccccccCcc---chHHHHHHHHcC-CCCC
Q 037446 185 IDMTGQISPTKRASFW-KTKRVFFVTPQVLEKDIQSG-TCLMKYLVCLVIDEAHRATGNY---AYCTAIRELMSV-PVQL 258 (1165)
Q Consensus 185 ~~l~G~~~~~~~~~l~-~~~dIlVaTpq~L~~~l~~~-~~~l~~~~lVVIDEAHrl~~~~---~~~~~l~~L~~~-~~~~ 258 (1165)
...+|+.+..++..+. +.++|||+||++|..++.+. ...+.++++|||||+|.+.+.. .+...+.+|..+ ..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8899999988776554 47899999999999887543 3467899999999999998631 245566666654 4568
Q ss_pred eEEEEccCCCCChHHHHHHHHhhccc-cccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhh
Q 037446 259 RILALTATPGSKQQTIQHIIDNLYIS-TLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337 (1165)
Q Consensus 259 riL~LSATP~~~~~~l~~Li~~L~is-~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~ 337 (1165)
|+|+||||..+. +.+... |... ...+... .. .....+. +.++..+. ..
T Consensus 161 QrIgLSATI~n~-eevA~~---L~g~~pv~Iv~~--~~----~r~~~l~-v~vp~~d~-~~------------------- 209 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAF---LGGDRPVTVVNP--PA----MRHPQIR-IVVPVANM-DD------------------- 209 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHH---hcCCCCEEEECC--CC----CcccceE-EEEecCch-hh-------------------
Confidence 999999999763 333322 2110 0000000 00 0000000 00000000 00
Q ss_pred cccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhc
Q 037446 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARF 417 (1165)
Q Consensus 338 ~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~l 417 (1165)
+ .... ...+.......
T Consensus 210 ----------------------~--------~~~~---------------------~~~~~~~~~~r------------- 225 (1490)
T PRK09751 210 ----------------------V--------SSVA---------------------SGTGEDSHAGR------------- 225 (1490)
T ss_pred ----------------------c--------cccc---------------------cccccccchhh-------------
Confidence 0 0000 00000000000
Q ss_pred ccchhhHHHHHHHHHhhhccCCCChHHHHH-HHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCcc------
Q 037446 418 MSKNEDIRKVKLLMQQSISHGAQSPKLSKM-LEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK------ 490 (1165)
Q Consensus 418 l~~~~~~~~v~~~l~~~~~~~~~s~Kl~~L-lelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~------ 490 (1165)
.......+ ..++... . .+.++||||+++..|+.++..|++......
T Consensus 226 ----------------------~~~i~~~v~~~il~~i-~----~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~ 278 (1490)
T PRK09751 226 ----------------------EGSIWPYIETGILDEV-L----RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSI 278 (1490)
T ss_pred ----------------------hhhhhHHHHHHHHHHH-h----cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccc
Confidence 00000001 1111111 1 357899999999999999999976531000
Q ss_pred ------c--------eeeec---ccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCH
Q 037446 491 ------A--------TEFIG---QSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553 (1165)
Q Consensus 491 ------~--------~~l~G---~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~ 553 (1165)
. ..+.| .....+||+|++++|..+++.|++|++++||||+.+++||||+++++||+++.|.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sV 358 (1490)
T PRK09751 279 AVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSV 358 (1490)
T ss_pred cchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCH
Confidence 0 00001 012357899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCC
Q 037446 554 LRMIQRMGRTGRKH 567 (1165)
Q Consensus 554 ~~yiQriGRagR~G 567 (1165)
..|+||+||+||..
T Consensus 359 as~LQRiGRAGR~~ 372 (1490)
T PRK09751 359 ASGLQRIGRAGHQV 372 (1490)
T ss_pred HHHHHHhCCCCCCC
Confidence 99999999999974
No 66
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.97 E-value=1.7e-30 Score=305.52 Aligned_cols=422 Identities=19% Similarity=0.266 Sum_probs=275.0
Q ss_pred CCCChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCC
Q 037446 107 NVPVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQ 181 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~ 181 (1165)
.+||.+||.-+++||.- -++|++++||+|||.+.+..+..+...+..+.-|||||. +-..+|.++|.+| .|.
T Consensus 397 ~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPs-STleNWlrEf~kw--CPs 473 (941)
T KOG0389|consen 397 GIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPS-STLENWLREFAKW--CPS 473 (941)
T ss_pred CCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecc-hhHHHHHHHHHHh--CCc
Confidence 48999999999999974 478999999999999988877777677778899999999 8889999999999 456
Q ss_pred ceEEEEeCCCChHH--HHhhcC---CccEEEEcHHHHHHHH-HcCccCCCCccEEEEcccccccCccchHHHHHHHHcCC
Q 037446 182 EWTIDMTGQISPTK--RASFWK---TKRVFFVTPQVLEKDI-QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP 255 (1165)
Q Consensus 182 ~~v~~l~G~~~~~~--~~~l~~---~~dIlVaTpq~L~~~l-~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~ 255 (1165)
+.+..++|...... |..+.+ .++|+++||......- .+..+.-.+|+++|+||+|.+++. ...-++.|+.++
T Consensus 474 l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~--~SeRy~~LM~I~ 551 (941)
T KOG0389|consen 474 LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNR--TSERYKHLMSIN 551 (941)
T ss_pred eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhcc--chHHHHHhcccc
Confidence 78888998875332 222222 5899999998876432 233445667999999999999984 344568888888
Q ss_pred CCCeEEEEccCC-CCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHH----HHHHHHHhhH
Q 037446 256 VQLRILALTATP-GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEIN----NRIWEVIRPY 330 (1165)
Q Consensus 256 ~~~riL~LSATP-~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~----~~l~~~i~~~ 330 (1165)
.+.| |+||||| .++..++..|+....+..+ .....++...|...... ....+...+. .+-...+.||
T Consensus 552 An~R-lLLTGTPLQNNL~ELiSLL~FvlP~vF---~~~~~dl~~if~~k~~~----d~d~e~~~l~qerIsrAK~im~PF 623 (941)
T KOG0389|consen 552 ANFR-LLLTGTPLQNNLKELISLLAFVLPKVF---DSSMEDLDVIFKAKKTS----DGDIENALLSQERISRAKTIMKPF 623 (941)
T ss_pred ccce-EEeeCCcccccHHHHHHHHHHHhhHhh---hccchHHHHHHhccCCc----cchhhHHHHHHHHHHHHHHhhhHH
Confidence 7755 9999999 4554555555443322221 12223344444332211 1111111111 1122344455
Q ss_pred HHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHH----HHHHHH--------------------
Q 037446 331 TSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYF----GALITL-------------------- 386 (1165)
Q Consensus 331 ~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~----~~L~~l-------------------- 386 (1165)
+.|..+ ..+....++.+.......+.... ..++..
T Consensus 624 ILRR~K---------------------~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vl 682 (941)
T KOG0389|consen 624 ILRRLK---------------------SQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVL 682 (941)
T ss_pred HHHHHH---------------------HHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHH
Confidence 555444 44444444444443333322211 111111
Q ss_pred HHHHHHHhhCC------chHHHHHHHHH-Hhhccch-----hcccchhhH--HHHHHHHHhhh---------ccCCCChH
Q 037446 387 YHIRRLLSSHG------IRPAYEMLEEK-LKQGSFA-----RFMSKNEDI--RKVKLLMQQSI---------SHGAQSPK 443 (1165)
Q Consensus 387 ~~i~~ll~~~g------~~~~~~~L~~~-~~~~~~~-----~ll~~~~~~--~~v~~~l~~~~---------~~~~~s~K 443 (1165)
.+++++....- .......+... ..+..+. .+...-..+ -.+..++.++- ...-.+.|
T Consensus 683 mqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK 762 (941)
T KOG0389|consen 683 MQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGK 762 (941)
T ss_pred HHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhh
Confidence 11111111000 00000000000 1111110 000000000 02223333322 12345899
Q ss_pred HHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCC-
Q 037446 444 LSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG- 522 (1165)
Q Consensus 444 l~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~- 522 (1165)
+..|..+|.+... .|.|||||+++..+.+.|...|..++ +...+|.| ......|+.+++.|...+
T Consensus 763 ~r~L~~LLp~~k~----~G~RVLiFSQFTqmLDILE~~L~~l~--~~ylRLDG--------sTqV~~RQ~lId~Fn~d~d 828 (941)
T KOG0389|consen 763 CRKLKELLPKIKK----KGDRVLIFSQFTQMLDILEVVLDTLG--YKYLRLDG--------STQVNDRQDLIDEFNTDKD 828 (941)
T ss_pred HhHHHHHHHHHhh----cCCEEEEeeHHHHHHHHHHHHHHhcC--ceEEeecC--------CccchHHHHHHHhhccCCc
Confidence 9999999988765 68999999999999999999999999 88888888 457789999999999765
Q ss_pred -ceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCccceecC
Q 037446 523 -YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFK 576 (1165)
Q Consensus 523 -~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv~v~~ 576 (1165)
+.+|++|.++|-|||+..+++||.+|...||-...|+-.|++|.||.+-|+|+.
T Consensus 829 ifVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~r 883 (941)
T KOG0389|consen 829 IFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYR 883 (941)
T ss_pred eEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEE
Confidence 568999999999999999999999999999999999999999999999777774
No 67
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=9.9e-30 Score=313.85 Aligned_cols=303 Identities=22% Similarity=0.251 Sum_probs=201.1
Q ss_pred ChHHHHHHHHHhhc-C-CeEEEcCCCchHHHHHHHHHHHHHHhCC-CCeEEEEecChhHHHHHHHHHHHHhCCC------
Q 037446 110 VRDYQFAITKTALF-S-NTLVALPTGLGKTLIAAVVIYNFFRWFP-DGKIVFAAPSRPLVMQQIEACHNIVGIP------ 180 (1165)
Q Consensus 110 lr~yQ~eal~~ll~-r-nvIl~a~TGsGKTL~a~lpil~~L~~~~-~~rvLILvPtr~La~Q~~~e~~kl~g~~------ 180 (1165)
|++||.+++..++. + ++++.++||||||.+++++++....... ..++++++|||+|+.|+.+++.++....
T Consensus 16 PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~ 95 (844)
T TIGR02621 16 PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEV 95 (844)
T ss_pred CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchh
Confidence 66777888887776 4 5777899999999976654443222222 2355668899999999999998876421
Q ss_pred -----------------CceEEEEeCCCCh-HHHHhhcCCccEEEEcHHHHHHHHH-c--------Ccc---CCCCccEE
Q 037446 181 -----------------QEWTIDMTGQISP-TKRASFWKTKRVFFVTPQVLEKDIQ-S--------GTC---LMKYLVCL 230 (1165)
Q Consensus 181 -----------------~~~v~~l~G~~~~-~~~~~l~~~~dIlVaTpq~L~~~l~-~--------~~~---~l~~~~lV 230 (1165)
.+.+..++|+... .++..+..+++|||+|++.+.+-.. + +.+ .+.++.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~L 175 (844)
T TIGR02621 96 EAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALI 175 (844)
T ss_pred hhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceEE
Confidence 3667888999876 4556666789999999765543111 0 001 26789999
Q ss_pred EEcccccccCccchHHHHHHHHcC---CC---CCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCc
Q 037446 231 VIDEAHRATGNYAYCTAIRELMSV---PV---QLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRK 304 (1165)
Q Consensus 231 VIDEAHrl~~~~~~~~~l~~L~~~---~~---~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~ 304 (1165)
|||||| + . .+|...+..|... +. +.|+++||||++.....+...+. ..+.
T Consensus 176 VLDEAD-L-d-~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~---------------------~~p~ 231 (844)
T TIGR02621 176 VHDEAH-L-E-PAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLS---------------------AEDY 231 (844)
T ss_pred EEehhh-h-c-cccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHc---------------------cCCc
Confidence 999999 3 3 3788888888873 22 26899999999754332211110 0000
Q ss_pred eEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHH
Q 037446 305 IELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI 384 (1165)
Q Consensus 305 ~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~ 384 (1165)
.+.+... + +..
T Consensus 232 --~i~V~~~-------------------~--------------l~a---------------------------------- 242 (844)
T TIGR02621 232 --KHPVLKK-------------------R--------------LAA---------------------------------- 242 (844)
T ss_pred --eeecccc-------------------c--------------ccc----------------------------------
Confidence 0000000 0 000
Q ss_pred HHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCe
Q 037446 385 TLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSR 464 (1165)
Q Consensus 385 ~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~k 464 (1165)
.++. .++ ......|+..++..+...+. ..+.+
T Consensus 243 -----------~ki~----------------q~v------------------~v~~e~Kl~~lv~~L~~ll~---e~g~~ 274 (844)
T TIGR02621 243 -----------KKIV----------------KLV------------------PPSDEKFLSTMVKELNLLMK---DSGGA 274 (844)
T ss_pred -----------cceE----------------EEE------------------ecChHHHHHHHHHHHHHHHh---hCCCc
Confidence 0000 000 00001122233333322221 14679
Q ss_pred EEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHH-----HHHHHHhc----CC-------ceEEEE
Q 037446 465 VIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQ-----AVLEKFRA----GG-------YNVIVA 528 (1165)
Q Consensus 465 vIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~-----~il~~Fr~----g~-------~~VLVA 528 (1165)
+||||++++.|+.+++.|...+ + ..+|| +|++.+|. .++++|++ |. ..||||
T Consensus 275 vLVF~NTv~~Aq~L~~~L~~~g--~--~lLHG--------~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVA 342 (844)
T TIGR02621 275 ILVFCRTVKHVRKVFAKLPKEK--F--ELLTG--------TLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVC 342 (844)
T ss_pred EEEEECCHHHHHHHHHHHHhcC--C--eEeeC--------CCCHHHHhhHHHHHHHHHHhccccccccccccccceEEec
Confidence 9999999999999999998876 4 45555 89999999 88999987 44 689999
Q ss_pred cccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC
Q 037446 529 TSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD 568 (1165)
Q Consensus 529 Tda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq 568 (1165)
|+++++||||+. ++||++..| ...|+||+||+||.|.
T Consensus 343 TdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~ 379 (844)
T TIGR02621 343 TSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGE 379 (844)
T ss_pred cchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCC
Confidence 999999999986 899987776 5899999999999995
No 68
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.97 E-value=1.3e-28 Score=275.54 Aligned_cols=487 Identities=16% Similarity=0.202 Sum_probs=294.1
Q ss_pred CCCCCC--CCChHHHHHHHHHhhc------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHH
Q 037446 102 WIYPVN--VPVRDYQFAITKTALF------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEAC 173 (1165)
Q Consensus 102 ~~~Pt~--IQlr~yQ~eal~~ll~------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~ 173 (1165)
...|.. +.|-+||.+.+.|+.. .++|++++||.|||++++..++.-+ ...+.|||||+.+|+ ||..++
T Consensus 175 aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~---~ra~tLVvaP~VAlm-QW~nEI 250 (791)
T KOG1002|consen 175 AEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV---DRAPTLVVAPTVALM-QWKNEI 250 (791)
T ss_pred ccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc---ccCCeeEEccHHHHH-HHHHHH
Confidence 344443 6799999999999986 5799999999999999988777643 345699999997665 999999
Q ss_pred HHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCc---------------cCCCCccEEEEcccccc
Q 037446 174 HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT---------------CLMKYLVCLVIDEAHRA 238 (1165)
Q Consensus 174 ~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~---------------~~l~~~~lVVIDEAHrl 238 (1165)
.+... ....+..++|......-+ -+.+++++.+|+..+...+++.. +..-+|.-||+||||.+
T Consensus 251 ~~~T~-gslkv~~YhG~~R~~nik-el~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~I 328 (791)
T KOG1002|consen 251 ERHTS-GSLKVYIYHGAKRDKNIK-ELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNI 328 (791)
T ss_pred HHhcc-CceEEEEEecccccCCHH-HhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccc
Confidence 99876 456677777765543322 23689999999999988776411 11224677999999999
Q ss_pred cCccchHHHHHHHHcCCCCCeEEEEccCC-CCChHHHHHHHHhhccccccccC--Cchh------------------hh-
Q 037446 239 TGNYAYCTAIRELMSVPVQLRILALTATP-GSKQQTIQHIIDNLYISTLEYRN--ESDQ------------------DV- 296 (1165)
Q Consensus 239 ~~~~~~~~~l~~L~~~~~~~riL~LSATP-~~~~~~l~~Li~~L~is~i~~~~--~~~~------------------~i- 296 (1165)
++. .....+++..+....+ ++||||| .+...+++.|+..|.+..+.+.. .-+. .+
T Consensus 329 K~R--~snTArAV~~L~tt~r-w~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m 405 (791)
T KOG1002|consen 329 KDR--QSNTARAVFALETTYR-WCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIM 405 (791)
T ss_pred ccc--cccHHHHHHhhHhhhh-hhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchhh
Confidence 983 4455667766655544 9999999 66778899999888765443210 0000 00
Q ss_pred --hhhhccC-------------------------------------------ceEEEEe---ccchhHHHHHHHHHHHHh
Q 037446 297 --SSYVHNR-------------------------------------------KIELIEV---EMGQEAVEINNRIWEVIR 328 (1165)
Q Consensus 297 --~~y~~~~-------------------------------------------~~~~i~v---~~~~~~~~i~~~l~~~i~ 328 (1165)
.-|++.. ..+++.+ .++..+.++|+.++..-.
T Consensus 406 ~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSk 485 (791)
T KOG1002|consen 406 QHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSK 485 (791)
T ss_pred hhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhH
Confidence 0001000 0011111 223455566666665544
Q ss_pred hHHHHHhhhcccccccccCCchhhhhhhhhhhhcCC-------CCCCCcccchh-------------hHHHHHHHHHHHH
Q 037446 329 PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAP-------PPNLPQIKFGE-------------VEAYFGALITLYH 388 (1165)
Q Consensus 329 ~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~-------~~~i~~~~~~~-------------l~~~~~~L~~l~~ 388 (1165)
.-+......|++.+ +|-. -|.+.....+...+| ..+++.....+ +.........-..
T Consensus 486 rkfntyieeGvvlN-NYAn--IF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlC 562 (791)
T KOG1002|consen 486 RKFNTYIEEGVVLN-NYAN--IFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLC 562 (791)
T ss_pred HhhhhHHhhhhhhh-hHHH--HHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHH
Confidence 44444444444332 1111 122222111111111 11222211111 1111111111122
Q ss_pred HHHHHhhCCchHHHHHHHHHHhhccchhc---cc-------chhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhccc
Q 037446 389 IRRLLSSHGIRPAYEMLEEKLKQGSFARF---MS-------KNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTK 458 (1165)
Q Consensus 389 i~~ll~~~g~~~~~~~L~~~~~~~~~~~l---l~-------~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~ 458 (1165)
+.++....+..... -.......+ ++ ....+.....+.+-.......+.|+++|++.|.-...
T Consensus 563 i~eyv~~f~~~~nv------tCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~-- 634 (791)
T KOG1002|consen 563 IKEYVESFMENNNV------TCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRE-- 634 (791)
T ss_pred HHHHHHhhhcccCC------CCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHH--
Confidence 22222211100000 000000000 00 0111222222222233455679999999999976654
Q ss_pred CCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcC-Cce-EEEEcccccccc
Q 037446 459 DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG-GYN-VIVATSIGEEGL 536 (1165)
Q Consensus 459 ~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g-~~~-VLVATda~~eGL 536 (1165)
.....|.|||+++....+.+.-.|.+.| +.++.+.| +|++..|.+.++.|++. .+. +|++-.+++..+
T Consensus 635 rd~t~KsIVFSQFTSmLDLi~~rL~kaG--fscVkL~G--------sMs~~ardatik~F~nd~~c~vfLvSLkAGGVAL 704 (791)
T KOG1002|consen 635 RDRTAKSIVFSQFTSMLDLIEWRLGKAG--FSCVKLVG--------SMSPAARDATIKYFKNDIDCRVFLVSLKAGGVAL 704 (791)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhhccC--ceEEEecc--------CCChHHHHHHHHHhccCCCeEEEEEEeccCceEe
Confidence 4456799999999999999999999999 99999988 89999999999999975 344 678999999999
Q ss_pred cccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCccceecChh-HHHHHHHHHHHHhc-CCcccccccccccHHHhhcCHH
Q 037446 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPE-VQFVELSIEQYVSR-GKKVKDDHAITTPIFKEKLTAA 614 (1165)
Q Consensus 537 DIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv~v~~~d-~~~~~~~Ie~~l~~-~~~l~~~~~~~~~~f~~~l~~~ 614 (1165)
|+..+.+|+++|||||++.-.|...|++|+||-+-+-++.-. +..++..|-++..+ .+++.........+.. +++++
T Consensus 705 NLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~-kLt~e 783 (791)
T KOG1002|consen 705 NLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAIS-KLTEE 783 (791)
T ss_pred eechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHH-hcCHH
Confidence 999999999999999999999999999999987644333221 11122223222222 2233322333333333 78888
Q ss_pred HHHHH
Q 037446 615 ETDLI 619 (1165)
Q Consensus 615 e~~~l 619 (1165)
+++.|
T Consensus 784 DmqfL 788 (791)
T KOG1002|consen 784 DMQFL 788 (791)
T ss_pred HHHHH
Confidence 87654
No 69
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=9.4e-29 Score=288.64 Aligned_cols=290 Identities=18% Similarity=0.172 Sum_probs=188.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCCh-----------
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISP----------- 193 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~----------- 193 (1165)
+++|.+|||+|||++|+++++..+......+++|++|+++|+.|+.+.+..+++. .++.++|....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSEE 77 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCchh
Confidence 4789999999999999999998877667789999999999999999999998764 23334433221
Q ss_pred H--HHHhh------cCCccEEEEcHHHHHHHHHcCc----cCC--CCccEEEEcccccccCccchHHHHHHHHc-C-CCC
Q 037446 194 T--KRASF------WKTKRVFFVTPQVLEKDIQSGT----CLM--KYLVCLVIDEAHRATGNYAYCTAIRELMS-V-PVQ 257 (1165)
Q Consensus 194 ~--~~~~l------~~~~dIlVaTpq~L~~~l~~~~----~~l--~~~~lVVIDEAHrl~~~~~~~~~l~~L~~-~-~~~ 257 (1165)
. ..... ....+|+|+||+.+...+.... +.+ -..++|||||||.+... ++.. +..++. + ...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~-~~~~-l~~~l~~l~~~~ 155 (358)
T TIGR01587 78 FEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEY-TLAL-ILAVLEVLKDND 155 (358)
T ss_pred HHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHH-HHHH-HHHHHHHHHHcC
Confidence 0 00000 1236799999999988765411 111 12378999999999863 2222 222221 1 245
Q ss_pred CeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhh
Q 037446 258 LRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337 (1165)
Q Consensus 258 ~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~ 337 (1165)
.++++||||++. .+..++....... . .......
T Consensus 156 ~~~i~~SATlp~---~l~~~~~~~~~~~--~------------------~~~~~~~------------------------ 188 (358)
T TIGR01587 156 VPILLMSATLPK---FLKEYAEKIGYVE--F------------------NEPLDLK------------------------ 188 (358)
T ss_pred CCEEEEecCchH---HHHHHHhcCCCcc--c------------------ccCCCCc------------------------
Confidence 689999999862 2333221110000 0 0000000
Q ss_pred cccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhc
Q 037446 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARF 417 (1165)
Q Consensus 338 ~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~l 417 (1165)
.+.. + .+..+.
T Consensus 189 ---------~~~~--~--~~~~~~-------------------------------------------------------- 199 (358)
T TIGR01587 189 ---------EERR--F--ERHRFI-------------------------------------------------------- 199 (358)
T ss_pred ---------cccc--c--ccccce--------------------------------------------------------
Confidence 0000 0 000000
Q ss_pred ccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecc
Q 037446 418 MSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ 497 (1165)
Q Consensus 418 l~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~ 497 (1165)
........|...+.+++... . .+.++||||++++.|+.++..|.+.+....+..+||
T Consensus 200 -----------------~~~~~~~~~~~~l~~l~~~~-~----~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~- 256 (358)
T TIGR01587 200 -----------------KIESDKVGEISSLERLLEFI-K----KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHS- 256 (358)
T ss_pred -----------------eeccccccCHHHHHHHHHHh-h----CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEEC-
Confidence 00000012223333333222 1 368999999999999999999988774335666666
Q ss_pred cccccCCCCCHHHHHH----HHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC
Q 037446 498 SSGKASKGQSQKVQQA----VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD 568 (1165)
Q Consensus 498 ~~g~~~ggms~~eR~~----il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq 568 (1165)
++++.+|.+ +++.|++|...+||||+++++||||+ +++||++..| +..|+||+||+||.|+
T Consensus 257 -------~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~ 321 (358)
T TIGR01587 257 -------RFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGR 321 (358)
T ss_pred -------CCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCC
Confidence 788888866 48999999999999999999999995 8899988766 7899999999999984
No 70
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.96 E-value=5.7e-28 Score=293.00 Aligned_cols=423 Identities=20% Similarity=0.232 Sum_probs=262.6
Q ss_pred CChHHHHHHHHHhhc-----------CCeEEEcCCCchHHHHHHHHHHHHHHhCCC-----CeEEEEecChhHHHHHHHH
Q 037446 109 PVRDYQFAITKTALF-----------SNTLVALPTGLGKTLIAAVVIYNFFRWFPD-----GKIVFAAPSRPLVMQQIEA 172 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-----------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~-----~rvLILvPtr~La~Q~~~e 172 (1165)
.+|+||.+++..+.. ..+|++..+|+|||++.+..++.++++.|. .+.|||+|. .|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 689999999998865 358999999999999999999999999999 899999999 999999999
Q ss_pred HHHHhCCCCceEEEEeCCCChHH--HHhh------cCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccch
Q 037446 173 CHNIVGIPQEWTIDMTGQISPTK--RASF------WKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAY 244 (1165)
Q Consensus 173 ~~kl~g~~~~~v~~l~G~~~~~~--~~~l------~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~ 244 (1165)
|.+|.+...+....++|...... ...+ ....-|++.+++++..... .+....+++||+||+|++.+ +-
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN--~~ 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKN--SD 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccc--hh
Confidence 99998865666777777776411 0111 1236899999999987655 45677899999999999998 55
Q ss_pred HHHHHHHHcCCCCCeEEEEccCCC-CChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhH---HHHH
Q 037446 245 CTAIRELMSVPVQLRILALTATPG-SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA---VEIN 320 (1165)
Q Consensus 245 ~~~l~~L~~~~~~~riL~LSATP~-~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~---~~i~ 320 (1165)
....+.|..+..++| |+|||||- |+..++.++++..++..+.-. ......+. .+....-......+. .+-.
T Consensus 393 s~~~kaL~~l~t~rR-VLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~---~sf~k~~~-~~i~~~~~~~~s~e~~~~~~rl 467 (776)
T KOG0390|consen 393 SLTLKALSSLKTPRR-VLLTGTPIQNDLKEYFNLLDFVRPGFLGSI---SSFKKKFE-IPILRGRDADASEEDREREERL 467 (776)
T ss_pred hHHHHHHHhcCCCce-EEeeCCcccccHHHHHHHHhhcChhhccch---HHHHHHhh-cccccccCCCcchhhhhhHHHH
Confidence 567788888877755 89999995 444555555554433332211 11111111 110000000011111 1113
Q ss_pred HHHHHHHhhHHHHHhhhccc----ccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHH------H-HHHHHHHH
Q 037446 321 NRIWEVIRPYTSRLSAIGLL----QNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYF------G-ALITLYHI 389 (1165)
Q Consensus 321 ~~l~~~i~~~~~rl~~~~vl----~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~------~-~L~~l~~i 389 (1165)
+.+...+..++.+.....+. ...++-.+|. +..++......+.... + .+.....+
T Consensus 468 ~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n--------------~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L 533 (776)
T KOG0390|consen 468 QELRELTNKFILRRTGDILLKYLPGKYEYVVFCN--------------PTPIQKELYKKLLDSMKMRTLKGYALELITKL 533 (776)
T ss_pred HHHHHHHHhheeecccchhhhhCCCceeEEEEeC--------------CcHHHHHHHHHHHHHHHhhhhhcchhhHHHHH
Confidence 44555566666665542211 1111111111 0000000000010000 0 00000111
Q ss_pred HHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEe
Q 037446 390 RRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469 (1165)
Q Consensus 390 ~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~ 469 (1165)
..++.. +......+...... .+ .+................+..+.|+..|..+|..... ....++.+..
T Consensus 534 ~k~cnh----P~L~~~~~~~~~e~--~~--~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~e---k~~~~~v~Is 602 (776)
T KOG0390|consen 534 KKLCNH----PSLLLLCEKTEKEK--AF--KNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIRE---KLLVKSVLIS 602 (776)
T ss_pred HHHhcC----HHhhcccccccccc--cc--cChHhhhcccccccccccchhhhHHHHHHHHHHHHhh---hcceEEEEec
Confidence 111110 00000000000000 00 0000000000011112233457888888888855432 2345666677
Q ss_pred CchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCC---ceEEEEcccccccccccCCCEEEE
Q 037446 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG---YNVIVATSIGEEGLDIMEVDLVIC 546 (1165)
Q Consensus 470 ~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~---~~VLVATda~~eGLDIp~vd~VI~ 546 (1165)
+.+...+.+...++..| +.+..++| .|+..+|+.+++.|++.. ..+|.+|.|+++||++-+++.||+
T Consensus 603 ny~~tldl~e~~~~~~g--~~~~rLdG--------~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil 672 (776)
T KOG0390|consen 603 NYTQTLDLFEQLCRWRG--YEVLRLDG--------KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL 672 (776)
T ss_pred cHHHHHHHHHHHHhhcC--ceEEEEcC--------CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE
Confidence 78888888888888777 88888887 789999999999999543 558899999999999999999999
Q ss_pred eccCCCHHHHHHHHhhcCCCCCCccceecC
Q 037446 547 FDANVSPLRMIQRMGRTGRKHDGRIPHIFK 576 (1165)
Q Consensus 547 ~D~p~S~~~yiQriGRagR~GqGkiv~v~~ 576 (1165)
||+.|||+.-.|+++||+|.||.+.+++|.
T Consensus 673 ~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 673 FDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred eCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 999999999999999999999999888884
No 71
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.96 E-value=2.1e-28 Score=304.61 Aligned_cols=344 Identities=21% Similarity=0.255 Sum_probs=241.6
Q ss_pred CCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc--CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHH
Q 037446 89 LCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF--SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLV 166 (1165)
Q Consensus 89 L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~--rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La 166 (1165)
+.+.+.+-+...++. ++++.|++++..... +|+||++|||+|||+++.+.|+..+..+ ++++|+|||+++|+
T Consensus 16 ~~~~v~~i~~~~~~~-----el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-~~k~vYivPlkALa 89 (766)
T COG1204 16 LDDRVLEILKGDGID-----ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-GGKVVYIVPLKALA 89 (766)
T ss_pred ccHHHHHHhccCChH-----HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-CCcEEEEeChHHHH
Confidence 666677666666665 677777777776664 8999999999999999999999988765 67999999999999
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCc-c--c
Q 037446 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN-Y--A 243 (1165)
Q Consensus 167 ~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~-~--~ 243 (1165)
.+.+++|+++ ..-++++...+|+..... +...+++|+|+|||++-...++......++++|||||+|.+.+. . .
T Consensus 90 ~Ek~~~~~~~-~~~GirV~~~TgD~~~~~--~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~ 166 (766)
T COG1204 90 EEKYEEFSRL-EELGIRVGISTGDYDLDD--ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPV 166 (766)
T ss_pred HHHHHHhhhH-HhcCCEEEEecCCcccch--hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCce
Confidence 9999999943 333567999999988544 22378999999999999999887778889999999999999874 1 2
Q ss_pred hHHHHHHHHcCCCCCeEEEEccCCCCChHHHHHHHHhhccccc--cccCCchhhhhhhhccCceEEEEeccchhHHHHHH
Q 037446 244 YCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTL--EYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINN 321 (1165)
Q Consensus 244 ~~~~l~~L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i--~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~ 321 (1165)
...++.+++......|++|||||.+|..+ +.+.|+-... .++.. .++..
T Consensus 167 lE~iv~r~~~~~~~~rivgLSATlpN~~e----vA~wL~a~~~~~~~rp~------~l~~~------------------- 217 (766)
T COG1204 167 LESIVARMRRLNELIRIVGLSATLPNAEE----VADWLNAKLVESDWRPV------PLRRG------------------- 217 (766)
T ss_pred ehhHHHHHHhhCcceEEEEEeeecCCHHH----HHHHhCCcccccCCCCc------ccccC-------------------
Confidence 45566667766667899999999987533 2222221111 00000 00000
Q ss_pred HHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHH
Q 037446 322 RIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPA 401 (1165)
Q Consensus 322 ~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~ 401 (1165)
++.. ..+ +...+...
T Consensus 218 ---------------------------v~~~-----~~~--------------------------------~~~~~~~k- 232 (766)
T COG1204 218 ---------------------------VPYV-----GAF--------------------------------LGADGKKK- 232 (766)
T ss_pred ---------------------------Cccc-----eEE--------------------------------EEecCccc-
Confidence 0000 000 00000000
Q ss_pred HHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHH
Q 037446 402 YEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNA 481 (1165)
Q Consensus 402 ~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~ 481 (1165)
.....+....++.+.+... .+..+||||++|+.+...++.
T Consensus 233 ------------------------------------~~~~~~~~~~~~~v~~~~~----~~~qvLvFv~sR~~a~~~A~~ 272 (766)
T COG1204 233 ------------------------------------TWPLLIDNLALELVLESLA----EGGQVLVFVHSRKEAEKTAKK 272 (766)
T ss_pred ------------------------------------cccccchHHHHHHHHHHHh----cCCeEEEEEecCchHHHHHHH
Confidence 0001122233444444444 688999999999999999999
Q ss_pred HHhc----CC-------Cccceeee----------------cccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccc
Q 037446 482 LATI----GD-------LVKATEFI----------------GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEE 534 (1165)
Q Consensus 482 L~~~----g~-------~i~~~~l~----------------G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~e 534 (1165)
|... .. ......+. -..++.+|.|++.++|.-+.+.|+.|.++||+||..++.
T Consensus 273 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~ 352 (766)
T COG1204 273 LRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAA 352 (766)
T ss_pred HHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhh
Confidence 8731 00 01111111 122357899999999999999999999999999999999
Q ss_pred cccccCCCEEEE----ec-----cCCCHHHHHHHHhhcCCCC--C-Cccceec
Q 037446 535 GLDIMEVDLVIC----FD-----ANVSPLRMIQRMGRTGRKH--D-GRIPHIF 575 (1165)
Q Consensus 535 GLDIp~vd~VI~----~D-----~p~S~~~yiQriGRagR~G--q-Gkiv~v~ 575 (1165)
|+|+|+-.+||- |+ .+.++.+++|+.|||||.| + |..+++.
T Consensus 353 GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 353 GVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred hcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 999998777773 77 5678999999999999999 3 5555555
No 72
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.96 E-value=1.6e-28 Score=301.95 Aligned_cols=321 Identities=18% Similarity=0.149 Sum_probs=206.4
Q ss_pred CCChHH----HHHHHHHhhc-CCeEEEcCCCchHHHH---------HHHHHHHHHH----hCCCCeEEEEecChhHHHHH
Q 037446 108 VPVRDY----QFAITKTALF-SNTLVALPTGLGKTLI---------AAVVIYNFFR----WFPDGKIVFAAPSRPLVMQQ 169 (1165)
Q Consensus 108 IQlr~y----Q~eal~~ll~-rnvIl~a~TGsGKTL~---------a~lpil~~L~----~~~~~rvLILvPtr~La~Q~ 169 (1165)
+++++. |.+++..+.. +++|+.|+||+|||.+ |+++.+..+. ....++++|++||++|+.|.
T Consensus 159 ~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi 238 (675)
T PHA02653 159 IPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLH 238 (675)
T ss_pred ccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHH
Confidence 455554 5555555554 8999999999999987 3344444432 22346899999999999999
Q ss_pred HHHHHHHhCCC---CceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHH
Q 037446 170 IEACHNIVGIP---QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCT 246 (1165)
Q Consensus 170 ~~e~~kl~g~~---~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~ 246 (1165)
..++.+..|.. ...+...+|+..........+..+|+|+|++... ..+.++++|||||||...... .
T Consensus 239 ~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~---D 308 (675)
T PHA02653 239 SITLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG---D 308 (675)
T ss_pred HHHHHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccch---h
Confidence 99998877653 3446677888774333333346799999976311 246789999999999987642 2
Q ss_pred HHHHHH-cC-CCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHH
Q 037446 247 AIRELM-SV-PVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIW 324 (1165)
Q Consensus 247 ~l~~L~-~~-~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~ 324 (1165)
.+..++ .. ...+|+++||||++...+.+...+.+.. .+..... ....++.+.+....
T Consensus 309 llL~llk~~~~~~rq~ILmSATl~~dv~~l~~~~~~p~--~I~I~gr---------t~~pV~~~yi~~~~---------- 367 (675)
T PHA02653 309 IIIAVARKHIDKIRSLFLMTATLEDDRDRIKEFFPNPA--FVHIPGG---------TLFPISEVYVKNKY---------- 367 (675)
T ss_pred HHHHHHHHhhhhcCEEEEEccCCcHhHHHHHHHhcCCc--EEEeCCC---------cCCCeEEEEeecCc----------
Confidence 222222 22 2234899999999755443433321100 0000000 00000000000000
Q ss_pred HHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHH
Q 037446 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEM 404 (1165)
Q Consensus 325 ~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~ 404 (1165)
.+.. .. ..
T Consensus 368 ------------------------~~~~----------------------------------------------~~--~y 375 (675)
T PHA02653 368 ------------------------NPKN----------------------------------------------KR--AY 375 (675)
T ss_pred ------------------------cccc----------------------------------------------ch--hh
Confidence 0000 00 00
Q ss_pred HHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHh
Q 037446 405 LEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT 484 (1165)
Q Consensus 405 L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~ 484 (1165)
+. ..| ..+++.+.... ...+.++||||+++..++.+++.|..
T Consensus 376 ~~----------------------------------~~k-~~~l~~L~~~~---~~~~g~iLVFlpg~~ei~~l~~~L~~ 417 (675)
T PHA02653 376 IE----------------------------------EEK-KNIVTALKKYT---PPKGSSGIVFVASVSQCEEYKKYLEK 417 (675)
T ss_pred hH----------------------------------HHH-HHHHHHHHHhh---cccCCcEEEEECcHHHHHHHHHHHHh
Confidence 00 000 11222222211 11356899999999999999999987
Q ss_pred cCCCccceeeecccccccCCCCCHHHHHHHHHHH-hcCCceEEEEcccccccccccCCCEEEEec---cCC---------
Q 037446 485 IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF-RAGGYNVIVATSIGEEGLDIMEVDLVICFD---ANV--------- 551 (1165)
Q Consensus 485 ~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~F-r~g~~~VLVATda~~eGLDIp~vd~VI~~D---~p~--------- 551 (1165)
..+.+.+..+|| +|++. ++++++| ++|+.+|||||+++++|||||+|++||++| .|.
T Consensus 418 ~~~~~~v~~LHG--------~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~i 487 (675)
T PHA02653 418 RLPIYDFYIIHG--------KVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFI 487 (675)
T ss_pred hcCCceEEeccC--------CcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCccccc
Confidence 632267777776 67764 5677887 689999999999999999999999999998 554
Q ss_pred CHHHHHHHHhhcCCCCCCccceecChhH
Q 037446 552 SPLRMIQRMGRTGRKHDGRIPHIFKPEV 579 (1165)
Q Consensus 552 S~~~yiQriGRagR~GqGkiv~v~~~d~ 579 (1165)
|.+.|+||+|||||.++|.++.++..+.
T Consensus 488 Skasa~QRaGRAGR~~~G~c~rLyt~~~ 515 (675)
T PHA02653 488 SKSMRTQRKGRVGRVSPGTYVYFYDLDL 515 (675)
T ss_pred CHHHHHHhccCcCCCCCCeEEEEECHHH
Confidence 8899999999999999999999998765
No 73
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.5e-29 Score=262.15 Aligned_cols=183 Identities=16% Similarity=0.207 Sum_probs=160.1
Q ss_pred CCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCC-eEEEEec
Q 037446 84 SFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDG-KIVFAAP 161 (1165)
Q Consensus 84 sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~-rvLILvP 161 (1165)
.|.+ -|.|.|+.++...||..|+.+| |..+++++++-+++..+..|.|||.+|.+.-++.+..-++. .+|++|+
T Consensus 43 gfrdfllkpellraivdcgfehpsevq----hecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmch 118 (387)
T KOG0329|consen 43 GFRDFLLKPELLRAIVDCGFEHPSEVQ----HECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH 118 (387)
T ss_pred chhhhhcCHHHHHHHHhccCCCchHhh----hhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEec
Confidence 5777 8999999999999999999999 89999999999999999999999999999988887654433 6899999
Q ss_pred ChhHHHHHHHHHHHHhC-CCCceEEEEeCCCChHHHHhhcC-CccEEEEcHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 162 SRPLVMQQIEACHNIVG-IPQEWTIDMTGQISPTKRASFWK-TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 162 tr~La~Q~~~e~~kl~g-~~~~~v~~l~G~~~~~~~~~l~~-~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
||+|+.|+..++.++.. .|...+.++.||....+..++++ .++|+|+||++++.+.+...+.+++++..|+|||+.++
T Consensus 119 trelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 119 TRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred cHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHH
Confidence 99999999999888765 56788999999998766554444 57999999999999999999999999999999999999
Q ss_pred CccchHHHHHHHHc-CCCCCeEEEEccCCCCC
Q 037446 240 GNYAYCTAIRELMS-VPVQLRILALTATPGSK 270 (1165)
Q Consensus 240 ~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~ 270 (1165)
.....+..++++.+ .+...|+..+|||....
T Consensus 199 e~lDMrRDvQEifr~tp~~KQvmmfsatlske 230 (387)
T KOG0329|consen 199 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE 230 (387)
T ss_pred HHHHHHHHHHHHhhcCcccceeeeeeeecchh
Confidence 87677778888875 56778999999998654
No 74
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.96 E-value=1.9e-28 Score=279.20 Aligned_cols=344 Identities=19% Similarity=0.189 Sum_probs=248.9
Q ss_pred CCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHh-h-cCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEE
Q 037446 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTA-L-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~l-l-~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLIL 159 (1165)
..-++ .+++.+.+-+...|+....|+| .-++.+- + +.|.+|.++|+||||++.-++=+..+.. .+++.||+
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ-----~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-~g~KmlfL 267 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQ-----VLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-GGKKMLFL 267 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchh-----hhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-CCCeEEEE
Confidence 34556 8999999999999999877766 4444443 3 3899999999999999988876555433 46799999
Q ss_pred ecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHH-----hhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcc
Q 037446 160 APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRA-----SFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDE 234 (1165)
Q Consensus 160 vPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~-----~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDE 234 (1165)
+|..+|++|-++.|+.-.+.....+..-.|-.....+. ..-..+||||+||+-+-.++..+ -.+.+++.|||||
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDE 346 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDE 346 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeee
Confidence 99999999999999876554445454444443332221 12235899999999998888876 5788999999999
Q ss_pred cccccCc---cchHHHHHHHHcCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEec
Q 037446 235 AHRATGN---YAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVE 311 (1165)
Q Consensus 235 AHrl~~~---~~~~~~l~~L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~ 311 (1165)
.|.+.+. +..-..+.+++.+.+..|+|+||||..|+.+ +...|+...+.+. .+|.
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~e----lA~~l~a~lV~y~-----------~RPV------- 404 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEE----LAKKLGAKLVLYD-----------ERPV------- 404 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHH----HHHHhCCeeEeec-----------CCCC-------
Confidence 9999762 2345567788888888999999999988743 3333322111110 0000
Q ss_pred cchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 037446 312 MGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRR 391 (1165)
Q Consensus 312 ~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ 391 (1165)
.. .. |+
T Consensus 405 ----pl--Er------------------------------Hl-------------------------------------- 410 (830)
T COG1202 405 ----PL--ER------------------------------HL-------------------------------------- 410 (830)
T ss_pred ----Ch--hH------------------------------ee--------------------------------------
Confidence 00 00 00
Q ss_pred HHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcc--cCCCCCeEEEEe
Q 037446 392 LLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKT--KDPKHSRVIIFS 469 (1165)
Q Consensus 392 ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~--~~~~~~kvIVF~ 469 (1165)
+.....+.|...+.++...-+.. ..+-.+++|||+
T Consensus 411 -------------------------------------------vf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT 447 (830)
T COG1202 411 -------------------------------------------VFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFT 447 (830)
T ss_pred -------------------------------------------eeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEe
Confidence 00001123444444444333321 223357999999
Q ss_pred CchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEE----
Q 037446 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI---- 545 (1165)
Q Consensus 470 ~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI---- 545 (1165)
++|..|..|+..|...| +++..+|+ |++..+|+.+...|.++++.++|+|-+++.|+|+|+-.+|+
T Consensus 448 ~SRrr~h~lA~~L~~kG--~~a~pYHa--------GL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLa 517 (830)
T COG1202 448 YSRRRCHELADALTGKG--LKAAPYHA--------GLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLA 517 (830)
T ss_pred cchhhHHHHHHHhhcCC--cccccccC--------CCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHH
Confidence 99999999999999988 88777765 99999999999999999999999999999999999755443
Q ss_pred EeccCCCHHHHHHHHhhcCCCC---CCccceecChhHHHH
Q 037446 546 CFDANVSPLRMIQRMGRTGRKH---DGRIPHIFKPEVQFV 582 (1165)
Q Consensus 546 ~~D~p~S~~~yiQriGRagR~G---qGkiv~v~~~d~~~~ 582 (1165)
+-.-|.|+..|.|+.|||||.+ .|++++++.+...+.
T Consensus 518 MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~ 557 (830)
T COG1202 518 MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYH 557 (830)
T ss_pred cccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhc
Confidence 3445789999999999999998 599999988776543
No 75
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=2.2e-27 Score=298.30 Aligned_cols=310 Identities=20% Similarity=0.229 Sum_probs=211.8
Q ss_pred HHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCC-CceEEEEeC
Q 037446 112 DYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIP-QEWTIDMTG 189 (1165)
Q Consensus 112 ~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~-~~~v~~l~G 189 (1165)
.+-.+++..+.. +++|+.++||||||.++.+++++... ..++++|+.|||+++.|.++.+.+.++.. +..++...+
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr 82 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVR 82 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEc
Confidence 345567777765 68999999999999999999987652 45689999999999999999997766643 223333233
Q ss_pred CCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccc-cccCccch-HHHHHHHHc-CCCCCeEEEEccC
Q 037446 190 QISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAH-RATGNYAY-CTAIRELMS-VPVQLRILALTAT 266 (1165)
Q Consensus 190 ~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAH-rl~~~~~~-~~~l~~L~~-~~~~~riL~LSAT 266 (1165)
... ......+|+|+|+++|.+.+.. ...+.++++|||||+| +..+. .+ ...++.+.. ++...++|+||||
T Consensus 83 ~~~-----~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~-Dl~L~ll~~i~~~lr~dlqlIlmSAT 155 (819)
T TIGR01970 83 GEN-----KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDA-DLGLALALDVQSSLREDLKILAMSAT 155 (819)
T ss_pred ccc-----ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhcc-chHHHHHHHHHHhcCCCceEEEEeCC
Confidence 222 1224579999999999998875 3578899999999999 45552 22 223334433 4667899999999
Q ss_pred CCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhccccccccc
Q 037446 267 PGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQ 346 (1165)
Q Consensus 267 P~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~ 346 (1165)
+... .+.. |+.+.. .+.+.... ..+ ..
T Consensus 156 l~~~--~l~~----------------------~l~~~~--vI~~~gr~--~pV--------e~----------------- 182 (819)
T TIGR01970 156 LDGE--RLSS----------------------LLPDAP--VVESEGRS--FPV--------EI----------------- 182 (819)
T ss_pred CCHH--HHHH----------------------HcCCCc--EEEecCcc--eee--------ee-----------------
Confidence 8642 1222 221111 11110000 000 00
Q ss_pred CCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHH
Q 037446 347 TLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRK 426 (1165)
Q Consensus 347 ~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~ 426 (1165)
.|... ... ..+.
T Consensus 183 ------------~y~~~---------------------------------~~~---~~~~-------------------- 194 (819)
T TIGR01970 183 ------------RYLPL---------------------------------RGD---QRLE-------------------- 194 (819)
T ss_pred ------------EEeec---------------------------------chh---hhHH--------------------
Confidence 00000 000 0000
Q ss_pred HHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhc-CCCccceeeecccccccCCC
Q 037446 427 VKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI-GDLVKATEFIGQSSGKASKG 505 (1165)
Q Consensus 427 v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~-g~~i~~~~l~G~~~g~~~gg 505 (1165)
......+..++.. ..+.+|||++++.+++.+++.|.+. +..+.+..+|| +
T Consensus 195 --------------~~v~~~l~~~l~~-------~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg--------~ 245 (819)
T TIGR01970 195 --------------DAVSRAVEHALAS-------ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYG--------E 245 (819)
T ss_pred --------------HHHHHHHHHHHHh-------cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecC--------C
Confidence 0000112222211 2468999999999999999999863 22266666665 8
Q ss_pred CCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCC------------------CHHHHHHHHhhcCCCC
Q 037446 506 QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV------------------SPLRMIQRMGRTGRKH 567 (1165)
Q Consensus 506 ms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~------------------S~~~yiQriGRagR~G 567 (1165)
|++++|.++++.|++|..+|||||+++++|||||+|++||+++.+. |.+.|+||.|||||.+
T Consensus 246 L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~ 325 (819)
T TIGR01970 246 LSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLE 325 (819)
T ss_pred CCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCC
Confidence 9999999999999999999999999999999999999999999874 3456999999999999
Q ss_pred CCccceecChhHH
Q 037446 568 DGRIPHIFKPEVQ 580 (1165)
Q Consensus 568 qGkiv~v~~~d~~ 580 (1165)
+|.++.+|+.+..
T Consensus 326 ~G~cyrL~t~~~~ 338 (819)
T TIGR01970 326 PGVCYRLWSEEQH 338 (819)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999987643
No 76
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.96 E-value=1e-27 Score=302.02 Aligned_cols=313 Identities=21% Similarity=0.255 Sum_probs=211.9
Q ss_pred CChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCC-CceEEE
Q 037446 109 PVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIP-QEWTID 186 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~-~~~v~~ 186 (1165)
..+.+-.+++..+.. +++|+.++||||||.++.+++++... ..+++||++|||+++.|.++.+.+.++.. +..++.
T Consensus 5 Pi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 5 PVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 344555677777766 78999999999999999998887532 34689999999999999999997766543 233444
Q ss_pred EeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccc-cCccchHHHHHHHH-cCCCCCeEEEEc
Q 037446 187 MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRA-TGNYAYCTAIRELM-SVPVQLRILALT 264 (1165)
Q Consensus 187 l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl-~~~~~~~~~l~~L~-~~~~~~riL~LS 264 (1165)
..++... .....+|+|+||++|.+.+.. ...+.++++|||||+|.. .+.......+..+. .++...++|+||
T Consensus 83 ~vr~~~~-----~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmS 156 (812)
T PRK11664 83 RMRAESK-----VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMS 156 (812)
T ss_pred EecCccc-----cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEe
Confidence 4443322 113568999999999998875 347899999999999963 33211122233333 356778999999
Q ss_pred cCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhccccccc
Q 037446 265 ATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRD 344 (1165)
Q Consensus 265 ATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~ 344 (1165)
||+... .+..+ +.+.. .+.+....
T Consensus 157 ATl~~~--~l~~~----------------------~~~~~--~I~~~gr~------------------------------ 180 (812)
T PRK11664 157 ATLDND--RLQQL----------------------LPDAP--VIVSEGRS------------------------------ 180 (812)
T ss_pred cCCCHH--HHHHh----------------------cCCCC--EEEecCcc------------------------------
Confidence 998642 12221 11110 01110000
Q ss_pred ccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhH
Q 037446 345 YQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDI 424 (1165)
Q Consensus 345 ~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~ 424 (1165)
+ |. ...|... .
T Consensus 181 ~----pV-----~~~y~~~---------------------------------~--------------------------- 191 (812)
T PRK11664 181 F----PV-----ERRYQPL---------------------------------P--------------------------- 191 (812)
T ss_pred c----cc-----eEEeccC---------------------------------c---------------------------
Confidence 0 00 0000000 0
Q ss_pred HHHHHHHHhhhccCCCChHHH-HHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhc-CCCccceeeeccccccc
Q 037446 425 RKVKLLMQQSISHGAQSPKLS-KMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI-GDLVKATEFIGQSSGKA 502 (1165)
Q Consensus 425 ~~v~~~l~~~~~~~~~s~Kl~-~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~-g~~i~~~~l~G~~~g~~ 502 (1165)
...++. .+...+...+. ...+.+|||++++..++.+++.|... +..+.+..+||
T Consensus 192 ---------------~~~~~~~~v~~~l~~~l~---~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg------ 247 (812)
T PRK11664 192 ---------------AHQRFDEAVARATAELLR---QESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYG------ 247 (812)
T ss_pred ---------------hhhhHHHHHHHHHHHHHH---hCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeC------
Confidence 000000 01111111111 12578999999999999999999862 22255555655
Q ss_pred CCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCC------------------CHHHHHHHHhhcC
Q 037446 503 SKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV------------------SPLRMIQRMGRTG 564 (1165)
Q Consensus 503 ~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~------------------S~~~yiQriGRag 564 (1165)
+|++++|.++++.|++|+.+|||||+++++|||||+|++||+++.+. |.+.|+||.||||
T Consensus 248 --~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaG 325 (812)
T PRK11664 248 --ALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAG 325 (812)
T ss_pred --CCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccC
Confidence 89999999999999999999999999999999999999999977664 3468999999999
Q ss_pred CCCCCccceecChhHH
Q 037446 565 RKHDGRIPHIFKPEVQ 580 (1165)
Q Consensus 565 R~GqGkiv~v~~~d~~ 580 (1165)
|.++|.++.+|+.+..
T Consensus 326 R~~~G~cyrL~t~~~~ 341 (812)
T PRK11664 326 RLEPGICLHLYSKEQA 341 (812)
T ss_pred CCCCcEEEEecCHHHH
Confidence 9999999999986543
No 77
>PRK09401 reverse gyrase; Reviewed
Probab=99.96 E-value=1.1e-27 Score=310.44 Aligned_cols=294 Identities=18% Similarity=0.188 Sum_probs=202.9
Q ss_pred CCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEE
Q 037446 108 VPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID 186 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~ 186 (1165)
..|+++|..++..++. +++++++|||+|||. +++++...+.. .+.++|||+||++|+.|+.+.++++.......+..
T Consensus 79 ~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~ 156 (1176)
T PRK09401 79 SKPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKI 156 (1176)
T ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEE
Confidence 4567778888877765 899999999999996 44555444433 46789999999999999999999987655555555
Q ss_pred EeCCCC--hHH----HHhhc-CCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCc----------cchH-HHH
Q 037446 187 MTGQIS--PTK----RASFW-KTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN----------YAYC-TAI 248 (1165)
Q Consensus 187 l~G~~~--~~~----~~~l~-~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~----------~~~~-~~l 248 (1165)
+.|+.. ..+ ...+. ..++|+|+||++|.+.+. .+...++++|||||||+++.+ .+|. ..+
T Consensus 157 ~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i 234 (1176)
T PRK09401 157 LYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDI 234 (1176)
T ss_pred EEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHH
Confidence 555532 122 12223 358999999999998876 456667999999999999852 2452 334
Q ss_pred HHHHcC-C------------------------CCCeEEEEccCCCCC-hHHHHHHHHhhccccccccCCchhhhhhhhcc
Q 037446 249 RELMSV-P------------------------VQLRILALTATPGSK-QQTIQHIIDNLYISTLEYRNESDQDVSSYVHN 302 (1165)
Q Consensus 249 ~~L~~~-~------------------------~~~riL~LSATP~~~-~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~ 302 (1165)
..++.. + ...+++++|||.... ... .++..+. .
T Consensus 235 ~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~--~l~~~ll----~--------------- 293 (1176)
T PRK09401 235 EKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV--KLFRELL----G--------------- 293 (1176)
T ss_pred HHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH--HHhhccc----e---------------
Confidence 333321 1 157899999998643 211 1111110 0
Q ss_pred CceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHH
Q 037446 303 RKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA 382 (1165)
Q Consensus 303 ~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 382 (1165)
+.+..... . ..+
T Consensus 294 -----~~v~~~~~---------------------------------~---------------~rn--------------- 305 (1176)
T PRK09401 294 -----FEVGSPVF---------------------------------Y---------------LRN--------------- 305 (1176)
T ss_pred -----EEecCccc---------------------------------c---------------cCC---------------
Confidence 00000000 0 000
Q ss_pred HHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCC
Q 037446 383 LITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462 (1165)
Q Consensus 383 L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~ 462 (1165)
+.+.+... ..|...|.+++..+ +
T Consensus 306 ------------------------------------------------I~~~yi~~--~~k~~~L~~ll~~l-------~ 328 (1176)
T PRK09401 306 ------------------------------------------------IVDSYIVD--EDSVEKLVELVKRL-------G 328 (1176)
T ss_pred ------------------------------------------------ceEEEEEc--ccHHHHHHHHHHhc-------C
Confidence 00000000 03455566665432 3
Q ss_pred CeEEEEeCchHH---HHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEE----ccccccc
Q 037446 463 SRVIIFSNFRGS---VRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVA----TSIGEEG 535 (1165)
Q Consensus 463 ~kvIVF~~sr~~---ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVA----Tda~~eG 535 (1165)
.++||||+++.. ++.+++.|+..| +++..+|| +| .+.+++|++|+++|||| |++++||
T Consensus 329 ~~~LIFv~t~~~~~~ae~l~~~L~~~g--i~v~~~hg--------~l-----~~~l~~F~~G~~~VLVatas~tdv~aRG 393 (1176)
T PRK09401 329 DGGLIFVPSDKGKEYAEELAEYLEDLG--INAELAIS--------GF-----ERKFEKFEEGEVDVLVGVASYYGVLVRG 393 (1176)
T ss_pred CCEEEEEecccChHHHHHHHHHHHHCC--CcEEEEeC--------cH-----HHHHHHHHCCCCCEEEEecCCCCceeec
Confidence 589999999777 999999999999 89888887 55 23459999999999999 6999999
Q ss_pred ccccC-CCEEEEeccCC------CHHHHHHHHhhcCCC
Q 037446 536 LDIME-VDLVICFDANV------SPLRMIQRMGRTGRK 566 (1165)
Q Consensus 536 LDIp~-vd~VI~~D~p~------S~~~yiQriGRagR~ 566 (1165)
||+|+ +++|||||.|. ....+.||+||+.+.
T Consensus 394 IDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 394 IDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 99999 89999999998 778899999999743
No 78
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=6.3e-27 Score=289.21 Aligned_cols=422 Identities=15% Similarity=0.155 Sum_probs=239.0
Q ss_pred CChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEe
Q 037446 109 PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMT 188 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~ 188 (1165)
.+++.|..+...++ .+.|+.+.||+|||++|++|++.... .+..++|++||+.||.|.++.+..++...++.+..+.
T Consensus 78 ~p~~vQl~~~~~l~-~G~Iaem~TGeGKTL~a~lp~~l~al--~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~ 154 (790)
T PRK09200 78 RPYDVQLIGALVLH-EGNIAEMQTGEGKTLTATMPLYLNAL--EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNF 154 (790)
T ss_pred CCchHHHHhHHHHc-CCceeeecCCCcchHHHHHHHHHHHH--cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 34444555544444 44599999999999999999974433 4668999999999999999999998888788899999
Q ss_pred CCCC-hHHHHhhcCCccEEEEcHHHH-HHHHHc------CccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeE
Q 037446 189 GQIS-PTKRASFWKTKRVFFVTPQVL-EKDIQS------GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRI 260 (1165)
Q Consensus 189 G~~~-~~~~~~l~~~~dIlVaTpq~L-~~~l~~------~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~ri 260 (1165)
|+.+ ..+++.. ..++|+++||+.| .+.+.. ....+..+.++||||||+++=+... .+
T Consensus 155 g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~-----------tp--- 219 (790)
T PRK09200 155 SDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQ-----------TP--- 219 (790)
T ss_pred CCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCC-----------Cc---
Confidence 9988 5555544 5699999999988 333322 1235678999999999998743111 11
Q ss_pred EEEccCCCCChHHHHHHHHhhc----cc-cccccC---------CchhhhhhhhccCceEEEEeccchhHHHHHHHHHHH
Q 037446 261 LALTATPGSKQQTIQHIIDNLY----IS-TLEYRN---------ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEV 326 (1165)
Q Consensus 261 L~LSATP~~~~~~l~~Li~~L~----is-~i~~~~---------~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~ 326 (1165)
|.+|+.+... ..++..+..+- -. .+.+.. .....+..++.-.. . + ......+...+...
T Consensus 220 liisg~~~~~-~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~--l--~--~~~~~~~~~~i~~A 292 (790)
T PRK09200 220 LIISGKPRVQ-SNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDN--L--Y--SLEHQVLYRHIILA 292 (790)
T ss_pred eeeeCCCccc-cHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCcc--c--c--ChhhhHHHHHHHHH
Confidence 4455544322 12332222211 00 010000 00001111111000 0 0 00000111111111
Q ss_pred HhhHHHHHhhhc-ccccc-------------cccCCch--hhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 037446 327 IRPYTSRLSAIG-LLQNR-------------DYQTLSP--VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR 390 (1165)
Q Consensus 327 i~~~~~rl~~~~-vl~~~-------------~~~~l~p--~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~ 390 (1165)
+........... ++.+. .-..|+- .+...+++.+.-.+... ....... ..++..|.
T Consensus 293 l~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~--t~a~It~----q~~fr~Y~-- 364 (790)
T PRK09200 293 LRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENR--TMASITI----QNLFRMFP-- 364 (790)
T ss_pred HHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCce--ehhhhhH----HHHHHHhH--
Confidence 221111000000 00000 0011111 11222222211111000 0011111 22222222
Q ss_pred HHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeC
Q 037446 391 RLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSN 470 (1165)
Q Consensus 391 ~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~ 470 (1165)
++ .|++......+..+.+.+...++.-++............+ ......|..+|++.+..... .+.++||||+
T Consensus 365 kl---~GmTGTa~t~~~e~~~~Y~l~v~~IPt~kp~~r~d~~~~i-~~~~~~K~~al~~~i~~~~~----~~~pvLIf~~ 436 (790)
T PRK09200 365 KL---SGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKV-FVTLDEKYKAVIEEVKERHE----TGRPVLIGTG 436 (790)
T ss_pred HH---hccCCCChHHHHHHHHHhCCcEEECCCCCCcccccCCCeE-EcCHHHHHHHHHHHHHHHHh----cCCCEEEEeC
Confidence 12 2333222222222222222222211111111111111111 12346789999998876433 5889999999
Q ss_pred chHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccc---cCCC-----
Q 037446 471 FRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDI---MEVD----- 542 (1165)
Q Consensus 471 sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDI---p~vd----- 542 (1165)
+++.++.++..|.+.| +++..+|| .+.++++..+..+++.| .|+|||++++||+|| |.|.
T Consensus 437 t~~~se~l~~~L~~~g--i~~~~L~~--------~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL 504 (790)
T PRK09200 437 SIEQSETFSKLLDEAG--IPHNLLNA--------KNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGL 504 (790)
T ss_pred cHHHHHHHHHHHHHCC--CCEEEecC--------CccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCc
Confidence 9999999999999998 88888887 56777777777766655 799999999999999 6998
Q ss_pred EEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHHH
Q 037446 543 LVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVE 583 (1165)
Q Consensus 543 ~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~~ 583 (1165)
+||+++.|.+...|+||+||+||.| +|...+++..++..+.
T Consensus 505 ~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l~~ 546 (790)
T PRK09200 505 AVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLK 546 (790)
T ss_pred EEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHHHH
Confidence 9999999999999999999999999 5888888877655553
No 79
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.96 E-value=4.1e-27 Score=281.92 Aligned_cols=219 Identities=20% Similarity=0.208 Sum_probs=166.5
Q ss_pred CChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHH-HhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCc
Q 037446 109 PVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFF-RWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L-~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~ 182 (1165)
|||.||..++.|+.. -|+|++++||+|||++.+..+.++. ..+.-|.-|||||| +.+.+|.-+|++|+ ++.
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpT-sviLnWEMElKRwc--Pgl 691 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPT-SVILNWEMELKRWC--PGL 691 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeec-hhhhhhhHHHhhhC--Ccc
Confidence 799999999999975 5899999999999999877665543 33445678999999 88899999999994 567
Q ss_pred eEEEEeCCCChHH-HHhhcCC---ccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCC
Q 037446 183 WTIDMTGQISPTK-RASFWKT---KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL 258 (1165)
Q Consensus 183 ~v~~l~G~~~~~~-~~~l~~~---~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~ 258 (1165)
.+..++|.....+ ++.-|.. .+|.|++|..+...+. .|...+|.|+|+||||++++ .-....+.+++++.++
T Consensus 692 KILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKn--fksqrWQAllnfnsqr 767 (1958)
T KOG0391|consen 692 KILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKN--FKSQRWQALLNFNSQR 767 (1958)
T ss_pred eEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcc--hhHHHHHHHhccchhh
Confidence 7888998876432 3344543 5999999999998876 56678899999999999998 3455668888887775
Q ss_pred eEEEEccCC-CCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhh
Q 037446 259 RILALTATP-GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337 (1165)
Q Consensus 259 riL~LSATP-~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~ 337 (1165)
| |+||+|| .|..-+++.++.+|....+ ..-..+..||.++....+.-... -...+..+|+++++||+.|..+.
T Consensus 768 R-LLLtgTPLqNslmELWSLmhFLmP~~f----~shd~fk~wfsnPltgmiEgsqe-yn~klV~RLHkVlrPfiLRRlK~ 841 (1958)
T KOG0391|consen 768 R-LLLTGTPLQNSLMELWSLMHFLMPQTF----ASHDIFKPWFSNPLTGMIEGSQE-YNHKLVIRLHKVLRPFILRRLKR 841 (1958)
T ss_pred e-eeecCCchhhHHHHHHHHHHHhhchhh----hhhhhHHHHhcCcchhhcccchh-hchHHHHHHHHHhHHHHHHHHHH
Confidence 5 9999999 4555667777766643322 12235677888776655554322 22556788999999999998888
Q ss_pred ccc
Q 037446 338 GLL 340 (1165)
Q Consensus 338 ~vl 340 (1165)
++.
T Consensus 842 dVE 844 (1958)
T KOG0391|consen 842 DVE 844 (1958)
T ss_pred HHH
Confidence 764
No 80
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.96 E-value=5.8e-27 Score=286.86 Aligned_cols=421 Identities=14% Similarity=0.161 Sum_probs=233.2
Q ss_pred ChHHHHHHHHHhh-cCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEe
Q 037446 110 VRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMT 188 (1165)
Q Consensus 110 lr~yQ~eal~~ll-~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~ 188 (1165)
+++||.+++..+. .++.|+.++||+|||++|++|++.... .++.++||+|++.|+.||.+.+..++...+..+..+.
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL--~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~ 146 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNAL--TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGV 146 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhh--cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence 3455555555444 366899999999999999999865443 3457999999999999999999887665556676665
Q ss_pred CC-----CChHHHHhhcCCccEEEEcHHHHH-HHHHc------CccCCCCccEEEEcccccccCccchHHHHHHHHcCCC
Q 037446 189 GQ-----ISPTKRASFWKTKRVFFVTPQVLE-KDIQS------GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV 256 (1165)
Q Consensus 189 G~-----~~~~~~~~l~~~~dIlVaTpq~L~-~~l~~------~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~ 256 (1165)
++ .....+.. ..+++|+++||++|. +.+.. ....+..+.++||||||.++-+... .
T Consensus 147 ~~s~~~~~~~~~rr~-~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDear-----------t 214 (762)
T TIGR03714 147 VDDPDEEYDANEKRK-IYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQ-----------T 214 (762)
T ss_pred CCCCccccCHHHHHH-hCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCc-----------C
Confidence 54 22222322 357999999999994 33321 2345678999999999999753111 1
Q ss_pred CCeEEEEccCCCCChHHHHHHHHh----hccc-cccc---------cCCchhhhhhhhccCceEEEEeccchhHHHHHHH
Q 037446 257 QLRILALTATPGSKQQTIQHIIDN----LYIS-TLEY---------RNESDQDVSSYVHNRKIELIEVEMGQEAVEINNR 322 (1165)
Q Consensus 257 ~~riL~LSATP~~~~~~l~~Li~~----L~is-~i~~---------~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~ 322 (1165)
+ |.+|+.+... ..++..+.. |.-. .+.+ .......+..++.-.. . .......+...
T Consensus 215 p---liisg~~~~~-~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~--l----~~~~~~~~~~~ 284 (762)
T TIGR03714 215 P---LVISGAPRVQ-SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDN--L----YSEEYFELVRH 284 (762)
T ss_pred C---eeeeCCCccc-hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCc--c----CChhhHHHHHH
Confidence 2 5556655332 223333222 2110 0100 0001111112211000 0 00111111112
Q ss_pred HHHHHhhHHHHHhhhc-ccccc-------------cccCCch--hhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHH
Q 037446 323 IWEVIRPYTSRLSAIG-LLQNR-------------DYQTLSP--VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITL 386 (1165)
Q Consensus 323 l~~~i~~~~~rl~~~~-vl~~~-------------~~~~l~p--~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l 386 (1165)
+...++.......... ++.+. .-..|+- .+...+++.+.-.+.. .........++|..
T Consensus 285 i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~--~t~a~It~qn~Fr~---- 358 (762)
T TIGR03714 285 INLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKET--RAMASITYQNLFKM---- 358 (762)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCc--eeeeeeeHHHHHhh----
Confidence 2222222111110000 00000 0000111 1111122221111100 01112222223221
Q ss_pred HHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEE
Q 037446 387 YHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVI 466 (1165)
Q Consensus 387 ~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvI 466 (1165)
|. ...|++.........+.+.+...++.-++............ .......|..++++.+.+... .+.++|
T Consensus 359 Y~-----kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~-i~~~~~~K~~ai~~~i~~~~~----~~~pvL 428 (762)
T TIGR03714 359 FN-----KLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDK-IYATLPEKLMATLEDVKEYHE----TGQPVL 428 (762)
T ss_pred Cc-----hhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCCe-EEECHHHHHHHHHHHHHHHhh----CCCCEE
Confidence 11 11333322222222222222111111111000000001111 122346789999998877544 588999
Q ss_pred EEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEccccccccccc-------
Q 037446 467 IFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIM------- 539 (1165)
Q Consensus 467 VF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp------- 539 (1165)
|||++++.++.++..|.+.| +++..++| .+.+++|..+..+|+.| .|+|||++++||+||+
T Consensus 429 Ift~s~~~se~ls~~L~~~g--i~~~~L~a--------~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~ 496 (762)
T TIGR03714 429 LITGSVEMSEIYSELLLREG--IPHNLLNA--------QNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAE 496 (762)
T ss_pred EEECcHHHHHHHHHHHHHCC--CCEEEecC--------CChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccc
Confidence 99999999999999999998 88888887 56777777666666555 7999999999999999
Q ss_pred --CCCEEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHHH
Q 037446 540 --EVDLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVE 583 (1165)
Q Consensus 540 --~vd~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~~ 583 (1165)
++++|+++++|..... +||+||+||.| +|...+++..++..+.
T Consensus 497 ~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l~~ 542 (762)
T TIGR03714 497 LGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDLIK 542 (762)
T ss_pred cCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhhhh
Confidence 9999999999998776 99999999999 5888888877665553
No 81
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=7.9e-28 Score=301.01 Aligned_cols=356 Identities=21% Similarity=0.220 Sum_probs=254.1
Q ss_pred CChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEE
Q 037446 109 PVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDM 187 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l 187 (1165)
.+|+-|.+++..++. ++++|.+|||.||++||++|++-. ++-+|||.|.++|+..|...+.. .+ +....+
T Consensus 264 ~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----~gitvVISPL~SLm~DQv~~L~~-~~---I~a~~L 334 (941)
T KOG0351|consen 264 GFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----GGVTVVISPLISLMQDQVTHLSK-KG---IPACFL 334 (941)
T ss_pred cCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----CCceEEeccHHHHHHHHHHhhhh-cC---cceeec
Confidence 577889999988876 899999999999999999999764 56899999999999999888844 23 335667
Q ss_pred eCCCChHHHHh----hcC---CccEEEEcHHHHHHHHHc--CccCCCC---ccEEEEcccccccCc-cchHHHHHHHHc-
Q 037446 188 TGQISPTKRAS----FWK---TKRVFFVTPQVLEKDIQS--GTCLMKY---LVCLVIDEAHRATGN-YAYCTAIRELMS- 253 (1165)
Q Consensus 188 ~G~~~~~~~~~----l~~---~~dIlVaTpq~L~~~l~~--~~~~l~~---~~lVVIDEAHrl~~~-~~~~~~l~~L~~- 253 (1165)
.++....++.. +.. ..+|++.||+++...... ....+.. +.++||||||++..+ |.|+..++++..
T Consensus 335 ~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l 414 (941)
T KOG0351|consen 335 SSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLL 414 (941)
T ss_pred cccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHH
Confidence 77777644332 222 369999999999764321 2223333 789999999999986 557777776642
Q ss_pred --CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHH
Q 037446 254 --VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYT 331 (1165)
Q Consensus 254 --~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~ 331 (1165)
......+|+||||....+ -.+++..|.+..-.+ +..-|.+++..........
T Consensus 415 ~~~~~~vP~iALTATAT~~v--~~DIi~~L~l~~~~~-------~~~sfnR~NL~yeV~~k~~----------------- 468 (941)
T KOG0351|consen 415 RIRFPGVPFIALTATATERV--REDVIRSLGLRNPEL-------FKSSFNRPNLKYEVSPKTD----------------- 468 (941)
T ss_pred HhhCCCCCeEEeehhccHHH--HHHHHHHhCCCCcce-------ecccCCCCCceEEEEeccC-----------------
Confidence 344478999999986554 256666666443221 1111111111111110000
Q ss_pred HHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhh
Q 037446 332 SRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQ 411 (1165)
Q Consensus 332 ~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~ 411 (1165)
T Consensus 469 -------------------------------------------------------------------------------- 468 (941)
T KOG0351|consen 469 -------------------------------------------------------------------------------- 468 (941)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccc
Q 037446 412 GSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKA 491 (1165)
Q Consensus 412 ~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~ 491 (1165)
......+...+.. ......+||||.++.+|+.++..|...| +++
T Consensus 469 -----------------------------~~~~~~~~~~~~~-----~~~~~s~IIYC~sr~~ce~vs~~L~~~~--~~a 512 (941)
T KOG0351|consen 469 -----------------------------KDALLDILEESKL-----RHPDQSGIIYCLSRKECEQVSAVLRSLG--KSA 512 (941)
T ss_pred -----------------------------ccchHHHHHHhhh-----cCCCCCeEEEeCCcchHHHHHHHHHHhc--hhh
Confidence 0000111222222 2257899999999999999999999998 676
Q ss_pred eeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-Cc
Q 037446 492 TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GR 570 (1165)
Q Consensus 492 ~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gk 570 (1165)
..||+ ||+..+|..+...|..++++|+|||-|+|+|||.|+|+.||||..|.+.+.|+|-+|||||.|. ..
T Consensus 513 ~~YHA--------Gl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~ 584 (941)
T KOG0351|consen 513 AFYHA--------GLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSS 584 (941)
T ss_pred Hhhhc--------CCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcce
Confidence 66655 9999999999999999999999999999999999999999999999999999999999999995 67
Q ss_pred cceecChhHHHHHHHHHHHHhcCC---ccc----ccccccccHHHhhcCHHHHHHHHHHcCCC
Q 037446 571 IPHIFKPEVQFVELSIEQYVSRGK---KVK----DDHAITTPIFKEKLTAAETDLIAKYFHPT 626 (1165)
Q Consensus 571 iv~v~~~d~~~~~~~Ie~~l~~~~---~l~----~~~~~~~~~f~~~l~~~e~~~l~~~f~~~ 626 (1165)
++++|..... ..++.++..++ .+. .....+...|.+..+.+.++++..||++.
T Consensus 585 C~l~y~~~D~---~~l~~ll~s~~~~~~~~~~~~~~~l~~~~~yCen~t~crr~~~l~~fge~ 644 (941)
T KOG0351|consen 585 CVLLYGYADI---SELRRLLTSGNRLSGVKKFTRLLELVQVVTYCENETDCRRKQILEYFGEE 644 (941)
T ss_pred eEEecchhHH---HHHHHHHHccccccchhhccchhhHHHHHHhhcCccchhHHHHHHhcccc
Confidence 7888876532 34555554441 111 11222333456567888899999999876
No 82
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=1.1e-26 Score=270.39 Aligned_cols=312 Identities=16% Similarity=0.205 Sum_probs=187.7
Q ss_pred HHHHHHHHhhcC---CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCC----CCceEE
Q 037446 113 YQFAITKTALFS---NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGI----PQEWTI 185 (1165)
Q Consensus 113 yQ~eal~~ll~r---nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~----~~~~v~ 185 (1165)
||.++++.+... ++++.+|||+|||++|+++++. ...+++|++|+++|+.||.+.+++++.. ....+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~-----~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~ 75 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH-----GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLL 75 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH-----cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 588999999873 3788999999999999999875 2457999999999999999999988731 234456
Q ss_pred EEeCCCChHH--------------------HHh-hcCCccEEEEcHHHHHHHHHcCc--------cCCCCccEEEEcccc
Q 037446 186 DMTGQISPTK--------------------RAS-FWKTKRVFFVTPQVLEKDIQSGT--------CLMKYLVCLVIDEAH 236 (1165)
Q Consensus 186 ~l~G~~~~~~--------------------~~~-l~~~~dIlVaTpq~L~~~l~~~~--------~~l~~~~lVVIDEAH 236 (1165)
.++|....+. +.. ....+.|+++||++|..++.... ..+..+++|||||+|
T Consensus 76 ~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H 155 (357)
T TIGR03158 76 HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred EecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccc
Confidence 6667533220 111 12357899999999987654321 124689999999999
Q ss_pred cccCccc-----hHHHHHHHHcCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEec
Q 037446 237 RATGNYA-----YCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVE 311 (1165)
Q Consensus 237 rl~~~~~-----~~~~l~~L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~ 311 (1165)
.+..... +...+..+.......++++||||++.. +...+..... +.. ..+.+.
T Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~---~~~~l~~~~~----------------~~~---~~~~v~ 213 (357)
T TIGR03158 156 LYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPA---LILRLQNAKQ----------------AGV---KIAPID 213 (357)
T ss_pred ccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHH---HHHHHHhccc----------------cCc---eeeeec
Confidence 9875311 112223222223346899999999643 2232222100 000 000100
Q ss_pred cc----hhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHH
Q 037446 312 MG----QEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY 387 (1165)
Q Consensus 312 ~~----~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~ 387 (1165)
.. .+..++.... ... .+....| .+..
T Consensus 214 g~~~~~~~~~~~~~~~-----------~~~------~~~~~~~----------------~i~~----------------- 243 (357)
T TIGR03158 214 GEKYQFPDNPELEADN-----------KTQ------SFRPVLP----------------PVEL----------------- 243 (357)
T ss_pred CcccccCCChhhhccc-----------ccc------ccceecc----------------ceEE-----------------
Confidence 00 0000000000 000 0000000 0000
Q ss_pred HHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEE
Q 037446 388 HIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVII 467 (1165)
Q Consensus 388 ~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIV 467 (1165)
.+... .......+..+.+.+.+.+. ...+.++||
T Consensus 244 ----------------------------~~~~~----------------~~~~~~~l~~l~~~i~~~~~--~~~~~k~LI 277 (357)
T TIGR03158 244 ----------------------------ELIPA----------------PDFKEEELSELAEEVIERFR--QLPGERGAI 277 (357)
T ss_pred ----------------------------EEEeC----------------CchhHHHHHHHHHHHHHHHh--ccCCCeEEE
Confidence 00000 00000112223333333321 124679999
Q ss_pred EeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEe
Q 037446 468 FSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547 (1165)
Q Consensus 468 F~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~ 547 (1165)
||+++..++.++..|+..+..+.+..+|| .+++.+|.++ ++..|||||+++++|||++.+ +|| +
T Consensus 278 f~nt~~~~~~l~~~L~~~~~~~~~~~l~g--------~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~ 341 (357)
T TIGR03158 278 ILDSLDEVNRLSDLLQQQGLGDDIGRITG--------FAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-F 341 (357)
T ss_pred EECCHHHHHHHHHHHhhhCCCceEEeeec--------CCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-E
Confidence 99999999999999998653345555555 6788887654 378899999999999999986 666 5
Q ss_pred ccCCCHHHHHHHHhhcC
Q 037446 548 DANVSPLRMIQRMGRTG 564 (1165)
Q Consensus 548 D~p~S~~~yiQriGRag 564 (1165)
+ |.+...|+||+||+|
T Consensus 342 ~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 342 S-ARDAAAFWQRLGRLG 357 (357)
T ss_pred C-CCCHHHHhhhcccCC
Confidence 5 899999999999997
No 83
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=3.6e-27 Score=285.84 Aligned_cols=423 Identities=14% Similarity=0.099 Sum_probs=235.7
Q ss_pred CChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEe
Q 037446 109 PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMT 188 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~ 188 (1165)
.+++.|..+...++..+ |+.+.||+|||++|++|++.... .+..++||+||+.||.|.++++..++...++.+..++
T Consensus 103 ~p~~VQ~~~~~~ll~G~-Iae~~TGeGKTla~~lp~~~~al--~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~ 179 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR-LAEMQTGEGKTLTATLPAGTAAL--AGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVV 179 (656)
T ss_pred CCChHHHHHHHHHhCCC-eeeeeCCCCcHHHHHHHHHHHhh--cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 45555666776666655 99999999999999999987654 3468999999999999999999998877778899999
Q ss_pred CCCChHHHHhhcCCccEEEEcHHHHHHHHHcCc--------------------------cCCCCccEEEEcccccccCcc
Q 037446 189 GQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT--------------------------CLMKYLVCLVIDEAHRATGNY 242 (1165)
Q Consensus 189 G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~--------------------------~~l~~~~lVVIDEAHrl~~~~ 242 (1165)
|+.+...+.. ..+++|+|+|...|--++.+.. .....+.++||||+|.++=+.
T Consensus 180 gg~~~~~r~~-~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDe 258 (656)
T PRK12898 180 EDQSPDERRA-AYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDE 258 (656)
T ss_pred CCCCHHHHHH-HcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccceeecc
Confidence 9987654443 4678999999987754332211 123568899999999876320
Q ss_pred chHHHHHHHHcCCCCCeEEEEccCCCCCh-HHHH----HHHHhhccc-cccc---------cCCchhhhhhhhccCceEE
Q 037446 243 AYCTAIRELMSVPVQLRILALTATPGSKQ-QTIQ----HIIDNLYIS-TLEY---------RNESDQDVSSYVHNRKIEL 307 (1165)
Q Consensus 243 ~~~~~l~~L~~~~~~~riL~LSATP~~~~-~~l~----~Li~~L~is-~i~~---------~~~~~~~i~~y~~~~~~~~ 307 (1165)
. ..+ +.+|+.+.... ..++ .+...|.-. .+.. .......+..++.... .
T Consensus 259 a-----------rtp---liis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~-~- 322 (656)
T PRK12898 259 A-----------RTP---LIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLP-P- 322 (656)
T ss_pred C-----------CCc---eEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcch-h-
Confidence 0 011 33333221110 0111 111111000 0000 0000011111111100 0
Q ss_pred EEeccchhHHHHHHHHHHHHhhHHHHHhhh---------ccccc-----ccccCCch--hhhhhhhhhhhcCCCCCCCcc
Q 037446 308 IEVEMGQEAVEINNRIWEVIRPYTSRLSAI---------GLLQN-----RDYQTLSP--VDLLNSRDKFRQAPPPNLPQI 371 (1165)
Q Consensus 308 i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~---------~vl~~-----~~~~~l~p--~~l~~~~~~~~~~~~~~i~~~ 371 (1165)
.+. ........+...+.......... .+++. .+-..|.- .+...+++.+.-.+.. ...
T Consensus 323 -~~~---~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~--~t~ 396 (656)
T PRK12898 323 -AWR---GAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPR--ETL 396 (656)
T ss_pred -hcc---cchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCc--eee
Confidence 000 00011111111111111100000 00000 00111111 1222222222211111 111
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHH
Q 037446 372 KFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVL 451 (1165)
Q Consensus 372 ~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL 451 (1165)
.......+|. .|. ++ .|+..........+.......++.-......... ............|..+|++.+
T Consensus 397 a~It~q~~Fr----~Y~--kl---~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~-~~~~~v~~t~~~K~~aL~~~i 466 (656)
T PRK12898 397 ARITYQRFFR----RYL--RL---AGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRR-HLPDEVFLTAAAKWAAVAARV 466 (656)
T ss_pred eeehHHHHHH----hhH--HH---hcccCcChHHHHHHHHHHCCCeEEeCCCCCccce-ecCCEEEeCHHHHHHHHHHHH
Confidence 2222223332 222 11 2333222111122211111111110000000000 111122234567999999988
Q ss_pred HHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEccc
Q 037446 452 VDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSI 531 (1165)
Q Consensus 452 ~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda 531 (1165)
..... .+.++||||++++.++.++..|...| +++..+|| . +.+|++.+..|+.+...|+|||++
T Consensus 467 ~~~~~----~~~pvLIft~t~~~se~L~~~L~~~g--i~~~~Lhg--------~--~~~rE~~ii~~ag~~g~VlVATdm 530 (656)
T PRK12898 467 RELHA----QGRPVLVGTRSVAASERLSALLREAG--LPHQVLNA--------K--QDAEEAAIVARAGQRGRITVATNM 530 (656)
T ss_pred HHHHh----cCCCEEEEeCcHHHHHHHHHHHHHCC--CCEEEeeC--------C--cHHHHHHHHHHcCCCCcEEEEccc
Confidence 76433 45789999999999999999999999 89988987 3 346667777777777789999999
Q ss_pred cccccccc---CCC-----EEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHHH
Q 037446 532 GEEGLDIM---EVD-----LVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVE 583 (1165)
Q Consensus 532 ~~eGLDIp---~vd-----~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~~ 583 (1165)
++||+||+ +|. +||+++.|.|...|+||+||+||.| +|..++++..++..+.
T Consensus 531 AgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~~ 591 (656)
T PRK12898 531 AGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQ 591 (656)
T ss_pred hhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHHH
Confidence 99999999 666 9999999999999999999999999 5988888887665543
No 84
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=1.4e-26 Score=298.50 Aligned_cols=357 Identities=20% Similarity=0.252 Sum_probs=211.1
Q ss_pred CCCChHHHHHHHHHhhc------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCC
Q 037446 107 NVPVRDYQFAITKTALF------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIP 180 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~ 180 (1165)
.+.+|+||.+++..+.. +++||+++||||||++++..+..++.....+++|||||+++|+.|+.+.|..+ +..
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~-~~~ 489 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDT-KIE 489 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhc-ccc
Confidence 46899999999987763 67999999999999998887777776666679999999999999999999885 222
Q ss_pred Cc-eEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHc-----CccCCCCccEEEEcccccccCc--------c----
Q 037446 181 QE-WTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS-----GTCLMKYLVCLVIDEAHRATGN--------Y---- 242 (1165)
Q Consensus 181 ~~-~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~-----~~~~l~~~~lVVIDEAHrl~~~--------~---- 242 (1165)
.. ....+.+...... .......+|+|+|+++|.+.+.. ..+.+..+++||||||||.... .
T Consensus 490 ~~~~~~~i~~i~~L~~-~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~ 568 (1123)
T PRK11448 490 GDQTFASIYDIKGLED-KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRD 568 (1123)
T ss_pred cccchhhhhchhhhhh-hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccch
Confidence 11 1111111111011 11124579999999999876532 1245678999999999996420 0
Q ss_pred --chHHHHHHHHcCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhh-hhhhccCc-eEEEEeccchhHHH
Q 037446 243 --AYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDV-SSYVHNRK-IELIEVEMGQEAVE 318 (1165)
Q Consensus 243 --~~~~~l~~L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i-~~y~~~~~-~~~i~v~~~~~~~~ 318 (1165)
.|...++.++.++. ...|||||||.... ..+|+. ..+.......+ ..|+-+.. ...+..........
T Consensus 569 ~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t---~~~FG~-----pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~ 639 (1123)
T PRK11448 569 QLDYVSKYRRVLDYFD-AVKIGLTATPALHT---TEIFGE-----PVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIH 639 (1123)
T ss_pred hhhHHHHHHHHHhhcC-ccEEEEecCCccch---hHHhCC-----eeEEeeHHHHHhcCCcccCcCCEEEEEEecccccc
Confidence 12345577777654 46799999997542 333331 11111111111 12332111 01111110000000
Q ss_pred HHH-HHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCC
Q 037446 319 INN-RIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397 (1165)
Q Consensus 319 i~~-~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g 397 (1165)
... .....+.+....+.. . .++. ++. +
T Consensus 640 ~~~~e~~~~~~~~~~~i~~-~----------------------------~l~d----~~~---------~---------- 667 (1123)
T PRK11448 640 FEKGEEVEVINTQTGEIDL-A----------------------------TLED----EVD---------F---------- 667 (1123)
T ss_pred ccccchhhhcchhhhhhhh-c----------------------------cCcH----HHh---------h----------
Confidence 000 000000000000000 0 0000 000 0
Q ss_pred chHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHH
Q 037446 398 IRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRD 477 (1165)
Q Consensus 398 ~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~ 477 (1165)
....+...+ ........+++.|.+++. .. .+.|+||||.++.+|+.
T Consensus 668 ---~~~~~~~~v-----------------------------i~~~~~~~i~~~l~~~l~-~~-~~~KtiIF~~s~~HA~~ 713 (1123)
T PRK11448 668 ---EVEDFNRRV-----------------------------ITESFNRVVCEELAKYLD-PT-GEGKTLIFAATDAHADM 713 (1123)
T ss_pred ---hHHHHHHHH-----------------------------hhHHHHHHHHHHHHHHHh-cc-CCCcEEEEEcCHHHHHH
Confidence 000000000 001223334444444443 12 24799999999999999
Q ss_pred HHHHHHhcC----CCc---cceeeecccccccCCCCCHHHHHHHHHHHhcCCc-eEEEEcccccccccccCCCEEEEecc
Q 037446 478 IMNALATIG----DLV---KATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGY-NVIVATSIGEEGLDIMEVDLVICFDA 549 (1165)
Q Consensus 478 L~~~L~~~g----~~i---~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~-~VLVATda~~eGLDIp~vd~VI~~D~ 549 (1165)
+.+.|.... +.+ .+..++| ++ .++.+++++|+++.. .|+|+++++.+|+|+|.|++||++++
T Consensus 714 i~~~L~~~f~~~~~~~~~~~v~~itg--------~~--~~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rp 783 (1123)
T PRK11448 714 VVRLLKEAFKKKYGQVEDDAVIKITG--------SI--DKPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRR 783 (1123)
T ss_pred HHHHHHHHHHhhcCCcCccceEEEeC--------Cc--cchHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecC
Confidence 999887641 111 2233444 33 357789999999886 69999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCCCC--Cc
Q 037446 550 NVSPLRMIQRMGRTGRKHD--GR 570 (1165)
Q Consensus 550 p~S~~~yiQriGRagR~Gq--Gk 570 (1165)
+.|...|+|++||+.|... ||
T Consensus 784 vkS~~lf~QmIGRgtR~~~~~~K 806 (1123)
T PRK11448 784 VRSRILYEQMLGRATRLCPEIGK 806 (1123)
T ss_pred CCCHHHHHHHHhhhccCCccCCC
Confidence 9999999999999999875 55
No 85
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1.5e-26 Score=269.09 Aligned_cols=446 Identities=18% Similarity=0.201 Sum_probs=290.1
Q ss_pred CCChHHHHHHHHHhhc------CCeEEEcCCCchHHHHHHHHHHHHHHh-----C--C-CCeEEEEecChhHHHHHHHHH
Q 037446 108 VPVRDYQFAITKTALF------SNTLVALPTGLGKTLIAAVVIYNFFRW-----F--P-DGKIVFAAPSRPLVMQQIEAC 173 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~------rnvIl~a~TGsGKTL~a~lpil~~L~~-----~--~-~~rvLILvPtr~La~Q~~~e~ 173 (1165)
+.+.+||.+++.|+.. ..+|+++++|.|||++.+..|++.-.. . . ...+|||||- +|+.||..++
T Consensus 324 v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 324 VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHH
Confidence 5789999999999987 479999999999999877777654311 1 1 1159999999 9999999999
Q ss_pred HHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHH----HHH----cCccCCCCccEEEEcccccccCccchH
Q 037446 174 HNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEK----DIQ----SGTCLMKYLVCLVIDEAHRATGNYAYC 245 (1165)
Q Consensus 174 ~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~----~l~----~~~~~l~~~~lVVIDEAHrl~~~~~~~ 245 (1165)
.+-+....+.|.+++|..........+..+||||+||..+.+ ... ...+..-.|..||+||||.+.+ +..
T Consensus 403 ~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN--~~t 480 (901)
T KOG4439|consen 403 ARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRN--SNT 480 (901)
T ss_pred HHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcc--cch
Confidence 988877778889999988655555566789999999998877 111 1222334588999999999998 444
Q ss_pred HHHHHHHcCCCCCeEEEEccCCC-CChHHHHHHHHhhccccccccCCchhh--------------------hhh------
Q 037446 246 TAIRELMSVPVQLRILALTATPG-SKQQTIQHIIDNLYISTLEYRNESDQD--------------------VSS------ 298 (1165)
Q Consensus 246 ~~l~~L~~~~~~~riL~LSATP~-~~~~~l~~Li~~L~is~i~~~~~~~~~--------------------i~~------ 298 (1165)
..-.++..+....| +++||||. ++.-+++.|+.+|.+..+.-...+... +++
T Consensus 481 q~S~AVC~L~a~~R-WclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g~~rlnll~K~LmLRRTKdQl~ 559 (901)
T KOG4439|consen 481 QCSKAVCKLSAKSR-WCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGGANRLNLLTKSLMLRRTKDQLQ 559 (901)
T ss_pred hHHHHHHHHhhcce-eecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccchhhhhhhhhhHHhhhhHHhhc
Confidence 44455555555545 99999994 555789999999887766522221111 122
Q ss_pred ------hhccCceEEEEeccchhHHHHHHHHHHHHhhHHH----HHhhhcccccccccCCchhhhhhhhhhhhc---CCC
Q 037446 299 ------YVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS----RLSAIGLLQNRDYQTLSPVDLLNSRDKFRQ---APP 365 (1165)
Q Consensus 299 ------y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~----rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~---~~~ 365 (1165)
.+...+++++.+.+..++..+|.-+...-+.++. +....+- ...|....++ ......|.. -.+
T Consensus 560 a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~--~~~~~s~~~~--~~~~~e~~~~~~~~p 635 (901)
T KOG4439|consen 560 ANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNN--DGGYQSRNRF--IGGHDEFGNYYNIGP 635 (901)
T ss_pred cccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhcc--ccCccccchh--ccccccccccccccc
Confidence 3345677888889998888888877654443332 2211110 0011111100 000000000 000
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhcc------------ch------hcccchhhHHHH
Q 037446 366 PNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGS------------FA------RFMSKNEDIRKV 427 (1165)
Q Consensus 366 ~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~------------~~------~ll~~~~~~~~v 427 (1165)
.. ......-......|..+..++..+-..|+.......++.-..+. +. ...+........
T Consensus 636 R~--~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~ 713 (901)
T KOG4439|consen 636 RF--LAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDL 713 (901)
T ss_pred hh--hhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHHHhhhhcccccccccccccc
Confidence 00 11111111112244455555665555443221111111100000 00 000000000000
Q ss_pred H-HHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCC
Q 037446 428 K-LLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQ 506 (1165)
Q Consensus 428 ~-~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggm 506 (1165)
. ..-.+.+.....+.|+..+++.+...+. ....+++|.++.......+...|.+.| .....++| ..
T Consensus 714 p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~---~skeK~viVSQwtsvLniv~~hi~~~g--~~y~si~G--------qv 780 (901)
T KOG4439|consen 714 PTAFPDQAFEPDRPSCKIAMVLEILETILT---SSKEKVVIVSQWTSVLNIVRKHIQKGG--HIYTSITG--------QV 780 (901)
T ss_pred cccchhhhcccccchhHHHHHHHHHHHHhh---cccceeeehhHHHHHHHHHHHHHhhCC--eeeeeecC--------cc
Confidence 0 0112234445678999999999988743 357899999999999999999999998 66677776 56
Q ss_pred CHHHHHHHHHHHh--cC-CceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCccceecC
Q 037446 507 SQKVQQAVLEKFR--AG-GYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFK 576 (1165)
Q Consensus 507 s~~eR~~il~~Fr--~g-~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv~v~~ 576 (1165)
..++|+.+++.|. +| ....|++-.+++.|||+.+.+++|++|+.|||+--.|+..|+.|.||.+.++++.
T Consensus 781 ~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR 853 (901)
T KOG4439|consen 781 LVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHR 853 (901)
T ss_pred chhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEE
Confidence 8999999999998 34 3446788999999999999999999999999999999999999999999888874
No 86
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.95 E-value=3.6e-27 Score=286.93 Aligned_cols=423 Identities=14% Similarity=0.106 Sum_probs=238.6
Q ss_pred hHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHH-HHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeC
Q 037446 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY-NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTG 189 (1165)
Q Consensus 111 r~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil-~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G 189 (1165)
++.|..+...+. .+.|+.++||+|||++|++|++ +.+ .+..++|++||+.||.|.++.+..++...++.+..+.|
T Consensus 58 ~~vQlig~~~l~-~G~Iaem~TGeGKTLva~lpa~l~aL---~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g 133 (745)
T TIGR00963 58 FDVQLIGGIALH-KGKIAEMKTGEGKTLTATLPAYLNAL---TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILS 133 (745)
T ss_pred cchHHhhhhhhc-CCceeeecCCCccHHHHHHHHHHHHH---hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 333444444333 4569999999999999999995 443 24579999999999999999999998877888999999
Q ss_pred CCChHHHHhhcCCccEEEEcHHHH-HHHHHcC------ccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEE
Q 037446 190 QISPTKRASFWKTKRVFFVTPQVL-EKDIQSG------TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILA 262 (1165)
Q Consensus 190 ~~~~~~~~~l~~~~dIlVaTpq~L-~~~l~~~------~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~ 262 (1165)
+.+...+... ..++|+|+||..| .+.+..+ .+.+..+.++||||+|+++-+......+ +..-......+.
T Consensus 134 ~~~~~~r~~~-y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLi--isg~~~~~~~ly 210 (745)
T TIGR00963 134 GMSPEERREA-YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLI--ISGPAEKSTELY 210 (745)
T ss_pred CCCHHHHHHh-cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHh--hcCCCCCchHHH
Confidence 9887665544 3589999999999 6666544 3467889999999999987521111100 000000111122
Q ss_pred EccCCCCChHHHHHHHHhhccc-ccc---------ccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHH
Q 037446 263 LTATPGSKQQTIQHIIDNLYIS-TLE---------YRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332 (1165)
Q Consensus 263 LSATP~~~~~~l~~Li~~L~is-~i~---------~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~ 332 (1165)
++|||. ...|.-. .+. +.......+..++.-. .. + ..........+...++....
T Consensus 211 ~~a~~i---------~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~--~l--y--~~~~~~~~~~i~~Al~A~~l 275 (745)
T TIGR00963 211 LQANRF---------AKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVD--NL--Y--DLENSPLIHYINNALKAKEL 275 (745)
T ss_pred HHHHHH---------HHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCc--cc--c--ChhhhHHHHHHHHHHHHHHH
Confidence 333320 0000000 000 0000000111111100 00 0 00000111111111111111
Q ss_pred HHhhhc---------cccc---c--cccCCch--hhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhC
Q 037446 333 RLSAIG---------LLQN---R--DYQTLSP--VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSH 396 (1165)
Q Consensus 333 rl~~~~---------vl~~---~--~~~~l~p--~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~ 396 (1165)
...... +++. + .-..|+- .+...+++.+.-.+.. .........++|.... ++ .
T Consensus 276 ~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~--~t~a~It~qn~Fr~Y~------kl---~ 344 (745)
T TIGR00963 276 FEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNEN--QTLATITYQNFFRLYE------KL---S 344 (745)
T ss_pred HhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCc--eeeeeeeHHHHHhhCc------hh---h
Confidence 000000 0000 0 0011111 1222222222111100 0112222233332221 11 2
Q ss_pred CchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHH
Q 037446 397 GIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVR 476 (1165)
Q Consensus 397 g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae 476 (1165)
|++.........+.+.+...++.-++............+ ......|+.++++.+.+... .+.++||||+++..++
T Consensus 345 GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i-~~t~~~k~~ai~~~i~~~~~----~grpvLV~t~si~~se 419 (745)
T TIGR00963 345 GMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKDLSDLV-YKTEEEKWKAVVDEIKERHA----KGQPVLVGTTSVEKSE 419 (745)
T ss_pred ccCCCcHHHHHHHHHHhCCCEEEeCCCCCeeeeeCCCeE-EcCHHHHHHHHHHHHHHHHh----cCCCEEEEeCcHHHHH
Confidence 333222222222222221111111110000000011111 12345688888888866544 6899999999999999
Q ss_pred HHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccC-------CCEEEEecc
Q 037446 477 DIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIME-------VDLVICFDA 549 (1165)
Q Consensus 477 ~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~-------vd~VI~~D~ 549 (1165)
.++..|.+.| ++...++| .+.+|++.+..|+.+...|+|||++++||+||+. .-+||+++.
T Consensus 420 ~ls~~L~~~g--i~~~~Lna----------~q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~ 487 (745)
T TIGR00963 420 LLSNLLKERG--IPHNVLNA----------KNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTER 487 (745)
T ss_pred HHHHHHHHcC--CCeEEeeC----------ChHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCC
Confidence 9999999999 88888887 3789999999999999999999999999999998 559999999
Q ss_pred CCCHHHHHHHHhhcCCCC-CCccceecChhHHHHH
Q 037446 550 NVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVE 583 (1165)
Q Consensus 550 p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~~ 583 (1165)
|.|...|.|+.||+||.| +|...+++..+...+.
T Consensus 488 p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~~ 522 (745)
T TIGR00963 488 HESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMR 522 (745)
T ss_pred CCcHHHHHHHhccccCCCCCcceEEEEeccHHHHH
Confidence 999999999999999999 4888887777655443
No 87
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=7.9e-27 Score=258.02 Aligned_cols=313 Identities=21% Similarity=0.288 Sum_probs=214.4
Q ss_pred HHHHHHHHhhc--CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCC
Q 037446 113 YQFAITKTALF--SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQ 190 (1165)
Q Consensus 113 yQ~eal~~ll~--rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~ 190 (1165)
.|..++..+.. .++.|++|||+||+|+|++|.+.. .+-++|+.|..+|+.++.+.+.++ +.+ +..+...
T Consensus 24 LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----~gITIV~SPLiALIkDQiDHL~~L-KVp---~~SLNSK 94 (641)
T KOG0352|consen 24 LQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----GGITIVISPLIALIKDQIDHLKRL-KVP---CESLNSK 94 (641)
T ss_pred HHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----CCeEEEehHHHHHHHHHHHHHHhc-CCc---hhHhcch
Confidence 46777777766 789999999999999999999764 558999999999999999999884 443 3344445
Q ss_pred CChHHHHhhc-------CCccEEEEcHHHHHHHHH----cCccCCCCccEEEEcccccccCc-cchHHHHHHHHc---CC
Q 037446 191 ISPTKRASFW-------KTKRVFFVTPQVLEKDIQ----SGTCLMKYLVCLVIDEAHRATGN-YAYCTAIRELMS---VP 255 (1165)
Q Consensus 191 ~~~~~~~~l~-------~~~dIlVaTpq~L~~~l~----~~~~~l~~~~lVVIDEAHrl~~~-~~~~~~l~~L~~---~~ 255 (1165)
.+..++.++. .+..+++.||+....... +......-+.|+|+||||++..+ |.|+..+-+|.. ..
T Consensus 95 lSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~ 174 (641)
T KOG0352|consen 95 LSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVC 174 (641)
T ss_pred hhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhC
Confidence 5544544332 356899999987654321 23334556899999999999876 456666555543 34
Q ss_pred CCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHh
Q 037446 256 VQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335 (1165)
Q Consensus 256 ~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~ 335 (1165)
.....++||||....++ .+++..|.+.. .+..| ..+. ...
T Consensus 175 ~~vpwvALTATA~~~Vq--EDi~~qL~L~~---------PVAiF-kTP~--------------FR~-------------- 214 (641)
T KOG0352|consen 175 PGVPWVALTATANAKVQ--EDIAFQLKLRN---------PVAIF-KTPT--------------FRD-------------- 214 (641)
T ss_pred CCCceEEeecccChhHH--HHHHHHHhhcC---------cHHhc-cCcc--------------hhh--------------
Confidence 56678999999876553 22222221100 00000 0000 000
Q ss_pred hhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccch
Q 037446 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFA 415 (1165)
Q Consensus 336 ~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~ 415 (1165)
.|....+..+++ .+.+
T Consensus 215 ----------------------------------------------NLFYD~~~K~~I-----~D~~------------- 230 (641)
T KOG0352|consen 215 ----------------------------------------------NLFYDNHMKSFI-----TDCL------------- 230 (641)
T ss_pred ----------------------------------------------hhhHHHHHHHHh-----hhHh-------------
Confidence 000000000000 0000
Q ss_pred hcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhc-------ccCCCCCeEEEEeCchHHHHHHHHHHHhcCCC
Q 037446 416 RFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFK-------TKDPKHSRVIIFSNFRGSVRDIMNALATIGDL 488 (1165)
Q Consensus 416 ~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~-------~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~ 488 (1165)
..|.++....+. ......+.+||||.+|+.|+.++-.|...|
T Consensus 231 -----------------------------~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~G-- 279 (641)
T KOG0352|consen 231 -----------------------------TVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAG-- 279 (641)
T ss_pred -----------------------------HhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcC--
Confidence 001111111110 122345789999999999999999999999
Q ss_pred ccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC
Q 037446 489 VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD 568 (1165)
Q Consensus 489 i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq 568 (1165)
+.+.++|. |+...+|.++.+.+.+++..||+||..+++|+|-|+|+.|||+++|.|.+.|.|..|||||.|.
T Consensus 280 i~A~AYHA--------GLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk 351 (641)
T KOG0352|consen 280 IPAMAYHA--------GLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGK 351 (641)
T ss_pred cchHHHhc--------ccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCC
Confidence 88887775 8999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -CccceecCh
Q 037446 569 -GRIPHIFKP 577 (1165)
Q Consensus 569 -Gkiv~v~~~ 577 (1165)
..+-+.|..
T Consensus 352 ~SyCRLYYsR 361 (641)
T KOG0352|consen 352 RSYCRLYYSR 361 (641)
T ss_pred ccceeeeecc
Confidence 444444443
No 88
>PRK14701 reverse gyrase; Provisional
Probab=99.95 E-value=2.2e-26 Score=303.71 Aligned_cols=296 Identities=15% Similarity=0.176 Sum_probs=201.2
Q ss_pred ChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCC--CceEEE
Q 037446 110 VRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIP--QEWTID 186 (1165)
Q Consensus 110 lr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~--~~~v~~ 186 (1165)
|++.|.+++..++. +++++.+|||+|||++++++++... .++.++|||+||++|+.|+.+.++.++... ...+..
T Consensus 80 pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~--~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~ 157 (1638)
T PRK14701 80 FWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA--LKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVY 157 (1638)
T ss_pred CCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH--hcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEE
Confidence 45556666666665 8999999999999996666554432 245689999999999999999999876432 345667
Q ss_pred EeCCCChHHHHh----hcC-CccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCc----------cchHHHHHH-
Q 037446 187 MTGQISPTKRAS----FWK-TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN----------YAYCTAIRE- 250 (1165)
Q Consensus 187 l~G~~~~~~~~~----l~~-~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~----------~~~~~~l~~- 250 (1165)
++|+.+..++.. +.. .++|+|+||+.|.+.+.. +...++++|||||||+++.+ .+|...+..
T Consensus 158 ~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~--l~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~ 235 (1638)
T PRK14701 158 YHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE--MKHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEK 235 (1638)
T ss_pred EeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH--HhhCCCCEEEEECceeccccccccchhhhcCCChHHHHHH
Confidence 888887665432 223 489999999999876653 22267999999999999752 255554432
Q ss_pred ---HH-----------------------cCCCCCe-EEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccC
Q 037446 251 ---LM-----------------------SVPVQLR-ILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNR 303 (1165)
Q Consensus 251 ---L~-----------------------~~~~~~r-iL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~ 303 (1165)
++ ..+...+ ++.+|||.... ..+..++..+.
T Consensus 236 ~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r-~~~~~l~~~~l--------------------- 293 (1638)
T PRK14701 236 AWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK-GDRVKLYRELL--------------------- 293 (1638)
T ss_pred HHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch-hHHHHHhhcCe---------------------
Confidence 21 1233344 57799998643 12223322110
Q ss_pred ceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHH
Q 037446 304 KIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGAL 383 (1165)
Q Consensus 304 ~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L 383 (1165)
.+.+..... . ..++.
T Consensus 294 ---~f~v~~~~~-------------------------------~-----------------lr~i~-------------- 308 (1638)
T PRK14701 294 ---GFEVGSGRS-------------------------------A-----------------LRNIV-------------- 308 (1638)
T ss_pred ---EEEecCCCC-------------------------------C-----------------CCCcE--------------
Confidence 000000000 0 00000
Q ss_pred HHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCC
Q 037446 384 ITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHS 463 (1165)
Q Consensus 384 ~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~ 463 (1165)
+.+.......| ..|++++..+ +.
T Consensus 309 -------------------------------------------------~~yi~~~~~~k-~~L~~ll~~~-------g~ 331 (1638)
T PRK14701 309 -------------------------------------------------DVYLNPEKIIK-EHVRELLKKL-------GK 331 (1638)
T ss_pred -------------------------------------------------EEEEECCHHHH-HHHHHHHHhC-------CC
Confidence 00000000112 3455555332 45
Q ss_pred eEEEEeCchHH---HHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEc----ccccccc
Q 037446 464 RVIIFSNFRGS---VRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT----SIGEEGL 536 (1165)
Q Consensus 464 kvIVF~~sr~~---ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVAT----da~~eGL 536 (1165)
.+||||++++. |+.+++.|...| +++..+|| .|..++++|++|+++||||| ++++|||
T Consensus 332 ~gIVF~~t~~~~e~ae~la~~L~~~G--i~a~~~h~-------------~R~~~l~~F~~G~~~VLVaT~s~~gvaaRGI 396 (1638)
T PRK14701 332 GGLIFVPIDEGAEKAEEIEKYLLEDG--FKIELVSA-------------KNKKGFDLFEEGEIDYLIGVATYYGTLVRGL 396 (1638)
T ss_pred CeEEEEeccccchHHHHHHHHHHHCC--CeEEEecc-------------hHHHHHHHHHcCCCCEEEEecCCCCeeEecC
Confidence 89999999875 589999999999 89888887 28899999999999999999 5899999
Q ss_pred cccC-CCEEEEeccCC---CHHHHHHHH-------------hhcCCCCC
Q 037446 537 DIME-VDLVICFDANV---SPLRMIQRM-------------GRTGRKHD 568 (1165)
Q Consensus 537 DIp~-vd~VI~~D~p~---S~~~yiQri-------------GRagR~Gq 568 (1165)
|+|+ |++|||||.|. +...|.|.. ||++|.|.
T Consensus 397 DiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~ 445 (1638)
T PRK14701 397 DLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGI 445 (1638)
T ss_pred ccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCC
Confidence 9999 99999999999 888777765 99999993
No 89
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=9e-27 Score=279.91 Aligned_cols=418 Identities=18% Similarity=0.204 Sum_probs=273.4
Q ss_pred CChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHHHh-CCCCeEEEEecChhHHHHHHHHHHHHhCCCCc
Q 037446 109 PVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFFRW-FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L~~-~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~ 182 (1165)
.++.||..+++|+.. -|+|++++||.|||++.+..|..++.. ...+..|||||+ +-...|..+|.+| .|.+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPl-stL~NW~~Ef~kW--aPSv 470 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPL-STLVNWSSEFPKW--APSV 470 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccc-cccCCchhhcccc--ccce
Confidence 699999999999987 379999999999999999888877754 346789999999 6666899999999 4456
Q ss_pred eEEEEeCCCChHHH---HhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCe
Q 037446 183 WTIDMTGQISPTKR---ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR 259 (1165)
Q Consensus 183 ~v~~l~G~~~~~~~---~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~r 259 (1165)
..+.+.|....... .......+|+++|++.+... ...+.--+|.++||||.|+|++ .-+.....+.......+
T Consensus 471 ~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikd--k~lLsKI~W~yMIIDEGHRmKN--a~~KLt~~L~t~y~~q~ 546 (1157)
T KOG0386|consen 471 QKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKD--KALLSKISWKYMIIDEGHRMKN--AICKLTDTLNTHYRAQR 546 (1157)
T ss_pred eeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCC--HHHHhccCCcceeecccccccc--hhhHHHHHhhccccchh
Confidence 66666665443211 11224589999999999872 3344556799999999999998 55555566654444445
Q ss_pred EEEEccCC-CCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEE-Eeccc-hhHHHHHHHHHHHHhhHHHHHhh
Q 037446 260 ILALTATP-GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELI-EVEMG-QEAVEINNRIWEVIRPYTSRLSA 336 (1165)
Q Consensus 260 iL~LSATP-~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i-~v~~~-~~~~~i~~~l~~~i~~~~~rl~~ 336 (1165)
.+++|||| .++...++.|++.+.+.-+.- ...+..||..+....= .+.+. ++..-+..+++++++|++.|..+
T Consensus 547 RLLLTGTPLQN~LpELWaLLNFlLP~IFnS----~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlK 622 (1157)
T KOG0386|consen 547 RLLLTGTPLQNNLPELWALLNFLLPNIFNS----CKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLK 622 (1157)
T ss_pred hhhhcCChhhhccHHHHHHHHHhccchhhh----HhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhh
Confidence 69999999 556678888888775443332 2345566655433222 13333 34456778899999999988765
Q ss_pred hcccc----cccccCCchhhhhhhhhhhhcCCC-CCCCc-ccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHh
Q 037446 337 IGLLQ----NRDYQTLSPVDLLNSRDKFRQAPP-PNLPQ-IKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK 410 (1165)
Q Consensus 337 ~~vl~----~~~~~~l~p~~l~~~~~~~~~~~~-~~i~~-~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~ 410 (1165)
..+.. ..++..-|... ...+.++.... ..... .....-+.+-......++++++|...-+... ++..+.
T Consensus 623 keVE~~LPdKve~viKC~mS--alQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~---ve~~~~ 697 (1157)
T KOG0386|consen 623 KEVEQELPDKVEDVIKCDMS--ALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFAN---VENSYT 697 (1157)
T ss_pred HHHhhhCchhhhHhhheehh--hhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhh---hccccc
Confidence 54321 11111111100 00000000000 00000 0000000011111122233333322111100 000000
Q ss_pred hccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCcc
Q 037446 411 QGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK 490 (1165)
Q Consensus 411 ~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~ 490 (1165)
. .... ......++|+.-|-.+|.++.. .+++++.||..+.....+..+|.-.+ ++
T Consensus 698 ~------------~~~~-------~dL~R~sGKfELLDRiLPKLka----tgHRVLlF~qMTrlmdimEdyL~~~~--~k 752 (1157)
T KOG0386|consen 698 L------------HYDI-------KDLVRVSGKFELLDRILPKLKA----TGHRVLLFSQMTRLMDILEDYLQIRE--YK 752 (1157)
T ss_pred c------------ccCh-------hHHHHhccHHHHHHhhhHHHHh----cCcchhhHHHHHHHHHHHHHHHhhhh--hh
Confidence 0 0000 0112347888888888877755 79999999999999999999998877 88
Q ss_pred ceeeecccccccCCCCCHHHHHHHHHHHhcCC---ceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCC
Q 037446 491 ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG---YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH 567 (1165)
Q Consensus 491 ~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~---~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~G 567 (1165)
...+.|. ....+|-..++.|+... +.+|++|.+++.|+|++.++.||.||..|+|..+.|+..||+|+|
T Consensus 753 YlRLDG~--------TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrig 824 (1157)
T KOG0386|consen 753 YLRLDGQ--------TKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIG 824 (1157)
T ss_pred eeeecCC--------cchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhh
Confidence 8888884 57889999999999543 568999999999999999999999999999999999999999999
Q ss_pred CCccceec
Q 037446 568 DGRIPHIF 575 (1165)
Q Consensus 568 qGkiv~v~ 575 (1165)
|.+-|-++
T Consensus 825 q~~evRv~ 832 (1157)
T KOG0386|consen 825 QKKEVRVL 832 (1157)
T ss_pred chhheeee
Confidence 87644444
No 90
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.94 E-value=7e-26 Score=261.67 Aligned_cols=442 Identities=18% Similarity=0.262 Sum_probs=280.3
Q ss_pred CCChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeEEEEecChhHHHHHHHHHHHHhCCCC
Q 037446 108 VPVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIVFAAPSRPLVMQQIEACHNIVGIPQ 181 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rvLILvPtr~La~Q~~~e~~kl~g~~~ 181 (1165)
..|..||..+++|+.. =|+|++++||+|||++.+..+.++...+ -.|.+|||+|. +...+|++++.++ .|.
T Consensus 566 ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpa-StL~NWaqEisrF--lP~ 642 (1185)
T KOG0388|consen 566 CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPA-STLHNWAQEISRF--LPS 642 (1185)
T ss_pred hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehH-HHHhHHHHHHHHh--Ccc
Confidence 3688999999999986 4899999999999999988887776543 34689999999 7888999999998 566
Q ss_pred ceEEEEeCCCChHHH-Hhhc---------CCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHH
Q 037446 182 EWTIDMTGQISPTKR-ASFW---------KTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIREL 251 (1165)
Q Consensus 182 ~~v~~l~G~~~~~~~-~~l~---------~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L 251 (1165)
..+..+.|+...... ..+| ...+|+|+|||.+..+.. .+..-.|.|.|+|||+.++. +...-.+.+
T Consensus 643 ~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDek--y~qkvKWQYMILDEAQAIKS--SsS~RWKtL 718 (1185)
T KOG0388|consen 643 FKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEK--YLQKVKWQYMILDEAQAIKS--SSSSRWKTL 718 (1185)
T ss_pred ceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHH--HHHhhhhhheehhHHHHhhh--hhhhHHHHH
Confidence 788889998775431 2222 247999999999876543 33445699999999999987 444455667
Q ss_pred HcCCCCCeEEEEccCCC-CChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhH
Q 037446 252 MSVPVQLRILALTATPG-SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPY 330 (1165)
Q Consensus 252 ~~~~~~~riL~LSATP~-~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~ 330 (1165)
+.+... -.|+|||||. +..++++.|+....++.+.-. ..+..||.+.. +-.......-.+.-..+++.++.|+
T Consensus 719 LsF~cR-NRLLLTGTPIQNsMqELWALLHFIMPsLFDsh----neFseWFSKdI-EshAe~~~tlneqqL~RLH~ILKPF 792 (1185)
T KOG0388|consen 719 LSFKCR-NRLLLTGTPIQNSMQELWALLHFIMPSLFDSH----NEFSEWFSKDI-ESHAEMNTTLNEQQLQRLHAILKPF 792 (1185)
T ss_pred hhhhcc-ceeeecCCccchHHHHHHHHHHHHhhHhhhch----HHHHHHHhhhh-HhHHHhcCCcCHHHHHHHHHHHhHH
Confidence 765444 3499999995 455666666655444333222 23445554421 1111111222344556788899999
Q ss_pred HHHHhhhcccc----cccccCCchhhhhh------------------hh---hhhhcCC-------C-C-----------
Q 037446 331 TSRLSAIGLLQ----NRDYQTLSPVDLLN------------------SR---DKFRQAP-------P-P----------- 366 (1165)
Q Consensus 331 ~~rl~~~~vl~----~~~~~~l~p~~l~~------------------~~---~~~~~~~-------~-~----------- 366 (1165)
..|..+.++.. ..+...+|...... +. .++..++ + .
T Consensus 793 MLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~ 872 (1185)
T KOG0388|consen 793 MLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLG 872 (1185)
T ss_pred HHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHH
Confidence 99888776542 22333333221111 00 1111111 0 0
Q ss_pred ------------CCCcccchhhHHHHHH-----HHHHHHHHHHHhhCCchHHHHHHHHHHhhccc-------------hh
Q 037446 367 ------------NLPQIKFGEVEAYFGA-----LITLYHIRRLLSSHGIRPAYEMLEEKLKQGSF-------------AR 416 (1165)
Q Consensus 367 ------------~i~~~~~~~l~~~~~~-----L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~-------------~~ 416 (1165)
.||.....++-..+.. ...+..+.+++...|....+..+.-..+.|.. ..
T Consensus 873 dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ 952 (1185)
T KOG0388|consen 873 DVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRN 952 (1185)
T ss_pred HHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHH
Confidence 1111111111111110 01111122222222211111000000000000 00
Q ss_pred ccc----chhhHHHHHHH----HH------------------------------------hhh------ccCCCChHHHH
Q 037446 417 FMS----KNEDIRKVKLL----MQ------------------------------------QSI------SHGAQSPKLSK 446 (1165)
Q Consensus 417 ll~----~~~~~~~v~~~----l~------------------------------------~~~------~~~~~s~Kl~~ 446 (1165)
++. ..+...++... +. ..+ .....+.|+..
T Consensus 953 ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~ 1032 (1185)
T KOG0388|consen 953 LLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLVV 1032 (1185)
T ss_pred hcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhccccceee
Confidence 000 00000000000 00 000 01234889888
Q ss_pred HHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCC-ceE
Q 037446 447 MLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNV 525 (1165)
Q Consensus 447 LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~-~~V 525 (1165)
|-++|.++.. .++++|+|.+..++.+.+.++|...+ +....+.| +....+|..++..|...+ +.+
T Consensus 1033 LDeLL~kLka----egHRvL~yfQMTkM~dl~EdYl~yr~--Y~ylRLDG--------Ssk~~dRrd~vrDwQ~sdiFvF 1098 (1185)
T KOG0388|consen 1033 LDELLPKLKA----EGHRVLMYFQMTKMIDLIEDYLVYRG--YTYLRLDG--------SSKASDRRDVVRDWQASDIFVF 1098 (1185)
T ss_pred HHHHHHHhhc----CCceEEehhHHHHHHHHHHHHHHhhc--cceEEecC--------cchhhHHHHHHhhccCCceEEE
Confidence 8888887655 79999999999999999999999998 88888888 557889999999999654 568
Q ss_pred EEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCccceecC
Q 037446 526 IVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFK 576 (1165)
Q Consensus 526 LVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv~v~~ 576 (1165)
|++|.+++.|||+.+++.||.||..|+|....|++.||+|.||.+-+++|.
T Consensus 1099 LLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyr 1149 (1185)
T KOG0388|consen 1099 LLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYR 1149 (1185)
T ss_pred EEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeee
Confidence 999999999999999999999999999999999999999999999888884
No 91
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.94 E-value=6.7e-25 Score=280.43 Aligned_cols=321 Identities=21% Similarity=0.273 Sum_probs=206.4
Q ss_pred CCCCCCCCCChHHHHHHHHHhhcCC-eEEEcCCCchHHHHHHHHHHHH-HHhCCCCeEEEEecC----hhHHHHHHHHHH
Q 037446 101 TWIYPVNVPVRDYQFAITKTALFSN-TLVALPTGLGKTLIAAVVIYNF-FRWFPDGKIVFAAPS----RPLVMQQIEACH 174 (1165)
Q Consensus 101 g~~~Pt~IQlr~yQ~eal~~ll~rn-vIl~a~TGsGKTL~a~lpil~~-L~~~~~~rvLILvPt----r~La~Q~~~e~~ 174 (1165)
.+.+|..+....+..+++..+.++. +||+++||||||.+ +|.+.+ +..+..+.+++.-|+ ++|+.++.+++.
T Consensus 66 ~~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~ 143 (1294)
T PRK11131 66 EITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELE 143 (1294)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHh
Confidence 4566667788888889999988754 66779999999984 663322 122223455556675 477777777776
Q ss_pred HHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccc-cccCccchH-HHHHHHH
Q 037446 175 NIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAH-RATGNYAYC-TAIRELM 252 (1165)
Q Consensus 175 kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAH-rl~~~~~~~-~~l~~L~ 252 (1165)
..+|.. ++ +. ... ......+.+|+|+||++|++.+.... .+.++++||||||| +.++. ++. ..++.++
T Consensus 144 ~~lG~~---VG-Y~--vrf--~~~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~-DfLLg~Lk~lL 213 (1294)
T PRK11131 144 TELGGC---VG-YK--VRF--NDQVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNI-DFILGYLKELL 213 (1294)
T ss_pred hhhcce---ec-ee--ecC--ccccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCcccccccc-chHHHHHHHhh
Confidence 544421 11 10 000 01122568999999999999987654 48899999999999 57664 443 3456666
Q ss_pred cCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHH
Q 037446 253 SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332 (1165)
Q Consensus 253 ~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~ 332 (1165)
...+..++|+||||... +.+... |.+.. .+.+..... .+
T Consensus 214 ~~rpdlKvILmSATid~--e~fs~~----------------------F~~ap--vI~V~Gr~~--pV------------- 252 (1294)
T PRK11131 214 PRRPDLKVIITSATIDP--ERFSRH----------------------FNNAP--IIEVSGRTY--PV------------- 252 (1294)
T ss_pred hcCCCceEEEeeCCCCH--HHHHHH----------------------cCCCC--EEEEcCccc--cc-------------
Confidence 55566899999999852 222221 21111 111110000 00
Q ss_pred HHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhc
Q 037446 333 RLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQG 412 (1165)
Q Consensus 333 rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~ 412 (1165)
. ..|.... . ...
T Consensus 253 -------------------e-----i~y~p~~-------~-----------------------~~~-------------- 264 (1294)
T PRK11131 253 -------------------E-----VRYRPIV-------E-----------------------EAD-------------- 264 (1294)
T ss_pred -------------------e-----EEEeecc-------c-----------------------ccc--------------
Confidence 0 0000000 0 000
Q ss_pred cchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccce
Q 037446 413 SFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKAT 492 (1165)
Q Consensus 413 ~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~ 492 (1165)
.....++..+++.+..+.. ...+.+||||++...++.+++.|...+ +...
T Consensus 265 -------------------------~~~~d~l~~ll~~V~~l~~---~~~GdILVFLpg~~EIe~lae~L~~~~--~~~~ 314 (1294)
T PRK11131 265 -------------------------DTERDQLQAIFDAVDELGR---EGPGDILIFMSGEREIRDTADALNKLN--LRHT 314 (1294)
T ss_pred -------------------------hhhHHHHHHHHHHHHHHhc---CCCCCEEEEcCCHHHHHHHHHHHHhcC--CCcc
Confidence 0000122233333332221 245789999999999999999999876 3321
Q ss_pred eeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEecc---------------C---CCHH
Q 037446 493 EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA---------------N---VSPL 554 (1165)
Q Consensus 493 ~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~---------------p---~S~~ 554 (1165)
.+ ..+|+++++.+|..+++. .|..+|||||+++++|||||++++||+++. | .|.+
T Consensus 315 ~V-----lpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSka 387 (1294)
T PRK11131 315 EI-----LPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQA 387 (1294)
T ss_pred eE-----eecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHh
Confidence 11 134458999999999886 477899999999999999999999999862 3 4668
Q ss_pred HHHHHHhhcCCCCCCccceecChhH
Q 037446 555 RMIQRMGRTGRKHDGRIPHIFKPEV 579 (1165)
Q Consensus 555 ~yiQriGRagR~GqGkiv~v~~~d~ 579 (1165)
.|.||.||+||.++|.++.+|..+.
T Consensus 388 sa~QRaGRAGR~~~G~c~rLyte~d 412 (1294)
T PRK11131 388 SANQRKGRCGRVSEGICIRLYSEDD 412 (1294)
T ss_pred hHhhhccccCCCCCcEEEEeCCHHH
Confidence 9999999999999999999998654
No 92
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.93 E-value=8.6e-25 Score=283.96 Aligned_cols=279 Identities=17% Similarity=0.222 Sum_probs=184.1
Q ss_pred CChHHHHHHHHHhh-cCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCce---E
Q 037446 109 PVRDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEW---T 184 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll-~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~---v 184 (1165)
.|+++|..++..++ ++++++.+|||+|||+ |++++...+.. .+.++|||+||++|+.|+.+.+.+++...+.. +
T Consensus 78 ~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i 155 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNI 155 (1171)
T ss_pred CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeee
Confidence 45555666666555 4899999999999997 55666555443 36789999999999999999999986432222 3
Q ss_pred EEEeCCCChHHHHh----hcC-CccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCc----------cchHH-HH
Q 037446 185 IDMTGQISPTKRAS----FWK-TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN----------YAYCT-AI 248 (1165)
Q Consensus 185 ~~l~G~~~~~~~~~----l~~-~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~----------~~~~~-~l 248 (1165)
+.++|+.+..++.. +.. +++|+|+||++|.+.+.. +.. ++++|||||||++++. .+|.. .+
T Consensus 156 ~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i 232 (1171)
T TIGR01054 156 GAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELI 232 (1171)
T ss_pred eeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHH
Confidence 35778887655432 223 489999999999987764 222 7999999999999862 24433 22
Q ss_pred HHHH-----------------------cCCCCCe--EEEEccCC-CCChHHHHHHHHhhccccccccCCchhhhhhhhcc
Q 037446 249 RELM-----------------------SVPVQLR--ILALTATP-GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHN 302 (1165)
Q Consensus 249 ~~L~-----------------------~~~~~~r--iL~LSATP-~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~ 302 (1165)
..++ ..+...+ ++.+|||+ +.... ..++..+. .
T Consensus 233 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~--~~l~r~ll----~--------------- 291 (1171)
T TIGR01054 233 EKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR--AKLFRELL----G--------------- 291 (1171)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH--HHHccccc----c---------------
Confidence 2221 1233333 56789994 33211 01111100 0
Q ss_pred CceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHH
Q 037446 303 RKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA 382 (1165)
Q Consensus 303 ~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 382 (1165)
+.+ +.... .. .+
T Consensus 292 -----~~v--~~~~~-------------------------------~~---------------r~--------------- 303 (1171)
T TIGR01054 292 -----FEV--GGGSD-------------------------------TL---------------RN--------------- 303 (1171)
T ss_pred -----eEe--cCccc-------------------------------cc---------------cc---------------
Confidence 000 00000 00 00
Q ss_pred HHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCC
Q 037446 383 LITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462 (1165)
Q Consensus 383 L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~ 462 (1165)
+.+... ....+...|.++|... +
T Consensus 304 ------------------------------------------------I~~~~~--~~~~~~~~L~~ll~~l-------~ 326 (1171)
T TIGR01054 304 ------------------------------------------------VVDVYV--EDEDLKETLLEIVKKL-------G 326 (1171)
T ss_pred ------------------------------------------------eEEEEE--ecccHHHHHHHHHHHc-------C
Confidence 000000 0011223455555432 4
Q ss_pred CeEEEEeCch---HHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEE----ccccccc
Q 037446 463 SRVIIFSNFR---GSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVA----TSIGEEG 535 (1165)
Q Consensus 463 ~kvIVF~~sr---~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVA----Tda~~eG 535 (1165)
.++||||+++ +.|+.|+..|...| +++..+|| +++ +.++++|++|+++|||| |++++||
T Consensus 327 ~~~IVFv~t~~~~~~a~~l~~~L~~~g--~~a~~lhg--------~~~----~~~l~~Fr~G~~~vLVata~~tdv~aRG 392 (1171)
T TIGR01054 327 TGGIVYVSIDYGKEKAEEIAEFLENHG--VKAVAYHA--------TKP----KEDYEKFAEGEIDVLIGVASYYGTLVRG 392 (1171)
T ss_pred CCEEEEEeccccHHHHHHHHHHHHhCC--ceEEEEeC--------CCC----HHHHHHHHcCCCCEEEEeccccCccccc
Confidence 5799999999 99999999999998 88888887 554 36899999999999999 5999999
Q ss_pred ccccC-CCEEEEeccCCC
Q 037446 536 LDIME-VDLVICFDANVS 552 (1165)
Q Consensus 536 LDIp~-vd~VI~~D~p~S 552 (1165)
||||+ +++||+||+|.-
T Consensus 393 IDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 393 LDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred CCCCccccEEEEECCCCE
Confidence 99999 899999999953
No 93
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.93 E-value=4e-25 Score=240.64 Aligned_cols=308 Identities=19% Similarity=0.231 Sum_probs=217.7
Q ss_pred cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHH
Q 037446 88 SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLV 166 (1165)
Q Consensus 88 ~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La 166 (1165)
+++....+.|.+.-... .+|+.|.++++.... .++++.+|||.||+++|.+|++-. ++-+|||||..+|+
T Consensus 77 pws~e~~~ilk~~f~le----kfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----dg~alvi~plislm 147 (695)
T KOG0353|consen 77 PWSDEAKDILKEQFHLE----KFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----DGFALVICPLISLM 147 (695)
T ss_pred CCchHHHHHHHHHhhHH----hcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----CCceEeechhHHHH
Confidence 66777766666543333 678889999998876 899999999999999999999764 78899999999999
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCCCChHHHH----hhc---CCccEEEEcHHHHHHHH---H--cCccCCCCccEEEEcc
Q 037446 167 MQQIEACHNIVGIPQEWTIDMTGQISPTKRA----SFW---KTKRVFFVTPQVLEKDI---Q--SGTCLMKYLVCLVIDE 234 (1165)
Q Consensus 167 ~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~----~l~---~~~dIlVaTpq~L~~~l---~--~~~~~l~~~~lVVIDE 234 (1165)
.++.-.++.+ |+. ...+....+..+.. .+. ...++++.||+.+...- . ...+....|.+|.|||
T Consensus 148 edqil~lkql-gi~---as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaide 223 (695)
T KOG0353|consen 148 EDQILQLKQL-GID---ASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDE 223 (695)
T ss_pred HHHHHHHHHh-Ccc---hhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecc
Confidence 9999999885 543 23344444433221 111 13689999999886532 1 1344567789999999
Q ss_pred cccccCc-cchHHHHHHH---HcCCCCCeEEEEccCCCCCh-HHHHHHHHhhccc-cccccCCchhhhhhhhccCceEEE
Q 037446 235 AHRATGN-YAYCTAIREL---MSVPVQLRILALTATPGSKQ-QTIQHIIDNLYIS-TLEYRNESDQDVSSYVHNRKIELI 308 (1165)
Q Consensus 235 AHrl~~~-~~~~~~l~~L---~~~~~~~riL~LSATP~~~~-~~l~~Li~~L~is-~i~~~~~~~~~i~~y~~~~~~~~i 308 (1165)
+|++..+ +.|+..++.+ .+.++...+||||||..+.+ .+.+.++. |. .+.| +.-|.++...+-
T Consensus 224 vhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~---ie~~~tf--------~a~fnr~nl~ye 292 (695)
T KOG0353|consen 224 VHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILC---IEAAFTF--------RAGFNRPNLKYE 292 (695)
T ss_pred eeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHh---HHhhhee--------ecccCCCCceeE
Confidence 9999875 4455544443 45677788999999997765 33333321 10 0001 111111111110
Q ss_pred EeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHH
Q 037446 309 EVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYH 388 (1165)
Q Consensus 309 ~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~ 388 (1165)
.....
T Consensus 293 v~qkp--------------------------------------------------------------------------- 297 (695)
T KOG0353|consen 293 VRQKP--------------------------------------------------------------------------- 297 (695)
T ss_pred eeeCC---------------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEE
Q 037446 389 IRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIF 468 (1165)
Q Consensus 389 i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF 468 (1165)
+....-++.+..++...| .+..+|||
T Consensus 298 -------------------------------------------------~n~dd~~edi~k~i~~~f-----~gqsgiiy 323 (695)
T KOG0353|consen 298 -------------------------------------------------GNEDDCIEDIAKLIKGDF-----AGQSGIIY 323 (695)
T ss_pred -------------------------------------------------CChHHHHHHHHHHhcccc-----CCCcceEE
Confidence 001112223344443333 48899999
Q ss_pred eCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEec
Q 037446 469 SNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD 548 (1165)
Q Consensus 469 ~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D 548 (1165)
|-+++.|+.++..|+.+| +.+..+| ..|.+.+|.-+-+.+-.|++.|+|||-++++|||-|+|+.|||..
T Consensus 324 c~sq~d~ekva~alkn~g--i~a~~yh--------a~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhs 393 (695)
T KOG0353|consen 324 CFSQKDCEKVAKALKNHG--IHAGAYH--------ANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHS 393 (695)
T ss_pred EeccccHHHHHHHHHhcC--ccccccc--------cccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecc
Confidence 999999999999999998 7665555 478999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHH
Q 037446 549 ANVSPLRMIQ 558 (1165)
Q Consensus 549 ~p~S~~~yiQ 558 (1165)
.|.|.+.|.|
T Consensus 394 l~ksienyyq 403 (695)
T KOG0353|consen 394 LPKSIENYYQ 403 (695)
T ss_pred cchhHHHHHH
Confidence 9999999999
No 94
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=8.2e-25 Score=259.47 Aligned_cols=310 Identities=19% Similarity=0.239 Sum_probs=227.4
Q ss_pred CCCChHHHHHHHHHhhc-------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCC
Q 037446 107 NVPVRDYQFAITKTALF-------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGI 179 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~-------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~ 179 (1165)
+++|-..|+.++..+.. .+-|+.++.|||||+++++.|+..+.. +..+.+.+||.-||.|.++.+.+|++.
T Consensus 260 PF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--G~Q~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 260 PFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--GYQAALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred CCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--CCeeEEeccHHHHHHHHHHHHHHHhhh
Confidence 46788889988888876 468999999999999999999988763 467999999999999999999999987
Q ss_pred CCceEEEEeCCCChHHHHhhc----C-CccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcC
Q 037446 180 PQEWTIDMTGQISPTKRASFW----K-TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV 254 (1165)
Q Consensus 180 ~~~~v~~l~G~~~~~~~~~l~----~-~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~ 254 (1165)
.++.+..++|......+..+. . ..+|+|+|-.-+.+ .+.+.++.+||+||=||+.-. - -..+...
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd-----~V~F~~LgLVIiDEQHRFGV~--Q---R~~L~~K 407 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD-----KVEFHNLGLVIIDEQHRFGVH--Q---RLALREK 407 (677)
T ss_pred cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc-----ceeecceeEEEEeccccccHH--H---HHHHHHh
Confidence 778899999998877665433 2 38999999877754 567889999999999999642 1 1334443
Q ss_pred CC-CCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHH
Q 037446 255 PV-QLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333 (1165)
Q Consensus 255 ~~-~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~r 333 (1165)
.. ...+|.|||||.+..- .-..+..|..+.+.--... +..+....
T Consensus 408 G~~~Ph~LvMTATPIPRTL-Alt~fgDldvS~IdElP~G---------RkpI~T~~------------------------ 453 (677)
T COG1200 408 GEQNPHVLVMTATPIPRTL-ALTAFGDLDVSIIDELPPG---------RKPITTVV------------------------ 453 (677)
T ss_pred CCCCCcEEEEeCCCchHHH-HHHHhccccchhhccCCCC---------CCceEEEE------------------------
Confidence 34 5688999999965431 1122222222211110000 00000000
Q ss_pred HhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhcc
Q 037446 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGS 413 (1165)
Q Consensus 334 l~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~ 413 (1165)
T Consensus 454 -------------------------------------------------------------------------------- 453 (677)
T COG1200 454 -------------------------------------------------------------------------------- 453 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHH--------HHHHHHHHHhc
Q 037446 414 FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS--------VRDIMNALATI 485 (1165)
Q Consensus 414 ~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~--------ae~L~~~L~~~ 485 (1165)
....+...+++.+.+-.. ++.++.|.|+-.++ +..+++.|+..
T Consensus 454 -------------------------i~~~~~~~v~e~i~~ei~----~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~ 504 (677)
T COG1200 454 -------------------------IPHERRPEVYERIREEIA----KGRQAYVVCPLIEESEKLELQAAEELYEELKSF 504 (677)
T ss_pred -------------------------eccccHHHHHHHHHHHHH----cCCEEEEEeccccccccchhhhHHHHHHHHHHH
Confidence 011233334444444333 58899999987654 55677777755
Q ss_pred CCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccC-CCHHHHHHHHhhcC
Q 037446 486 GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN-VSPLRMIQRMGRTG 564 (1165)
Q Consensus 486 g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p-~S~~~yiQriGRag 564 (1165)
.+.+++..+|| .|+..++.+++++|++|+++|||||.+.+.|||+|++++.|..++- .-.+.+-|-.||+|
T Consensus 505 ~~~~~vgL~HG--------rm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVG 576 (677)
T COG1200 505 LPELKVGLVHG--------RMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVG 576 (677)
T ss_pred cccceeEEEec--------CCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccC
Confidence 44455555555 8999999999999999999999999999999999999999988875 57889999999999
Q ss_pred CCC-CCccceecChhH
Q 037446 565 RKH-DGRIPHIFKPEV 579 (1165)
Q Consensus 565 R~G-qGkiv~v~~~d~ 579 (1165)
|.+ +..+++++.+..
T Consensus 577 RG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 577 RGDLQSYCVLLYKPPL 592 (677)
T ss_pred CCCcceEEEEEeCCCC
Confidence 998 677888888765
No 95
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.93 E-value=5.8e-24 Score=265.50 Aligned_cols=150 Identities=19% Similarity=0.173 Sum_probs=117.7
Q ss_pred CCCChHHHHHHHHHhhc----CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCc
Q 037446 107 NVPVRDYQFAITKTALF----SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~----rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~ 182 (1165)
+..++++|.+++..+.. +++++.++||+|||.+|+.++...+.. ++++|||+|+++|+.|+.+.|++.+|.
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--g~~vLvLvPt~~L~~Q~~~~l~~~fg~--- 216 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--GKQALVLVPEIALTPQMLARFRARFGA--- 216 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhCC---
Confidence 46799999999999975 579999999999999999988877653 568999999999999999999998764
Q ss_pred eEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCcc----ch-HHHHHHHH
Q 037446 183 WTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNY----AY-CTAIRELM 252 (1165)
Q Consensus 183 ~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~----~~-~~~l~~L~ 252 (1165)
.+..++|+.+..++...| ...+|+|+|++.+. ..+.++++|||||+|...-.. .| ...+..++
T Consensus 217 ~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~r 289 (679)
T PRK05580 217 PVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVR 289 (679)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHH
Confidence 477888888766554333 35799999998763 467889999999999865321 11 22333344
Q ss_pred cCCCCCeEEEEccCCC
Q 037446 253 SVPVQLRILALTATPG 268 (1165)
Q Consensus 253 ~~~~~~riL~LSATP~ 268 (1165)
....+.++|++||||.
T Consensus 290 a~~~~~~~il~SATps 305 (679)
T PRK05580 290 AKLENIPVVLGSATPS 305 (679)
T ss_pred hhccCCCEEEEcCCCC
Confidence 4456778999999996
No 96
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=2.2e-24 Score=260.55 Aligned_cols=337 Identities=21% Similarity=0.278 Sum_probs=227.6
Q ss_pred CChHHHHHHHHHhhc--CCeEEEcCCCchHHHHHHHHHHHHHHhC--------CCCeEEEEecChhHHHHHHHHHHHHhC
Q 037446 109 PVRDYQFAITKTALF--SNTLVALPTGLGKTLIAAVVIYNFFRWF--------PDGKIVFAAPSRPLVMQQIEACHNIVG 178 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~--rnvIl~a~TGsGKTL~a~lpil~~L~~~--------~~~rvLILvPtr~La~Q~~~e~~kl~g 178 (1165)
.++..|.++...+.. .|.||+||||+|||.+|.+.|++.+..+ .+-++++|+|+++||....+.+.+-++
T Consensus 110 ~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~ 189 (1230)
T KOG0952|consen 110 EFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA 189 (1230)
T ss_pred HHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc
Confidence 467788999998887 7999999999999999999999998752 234899999999999999999988887
Q ss_pred CCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcC---ccCCCCccEEEEcccccccCccc--hHHHHHHHH-
Q 037446 179 IPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG---TCLMKYLVCLVIDEAHRATGNYA--YCTAIRELM- 252 (1165)
Q Consensus 179 ~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~---~~~l~~~~lVVIDEAHrl~~~~~--~~~~l~~L~- 252 (1165)
.-++.+..++|+..-..-+ ...++|+|+||+.+--.-+++ ...+..+.+|||||+|.+.+..+ ...++.+.+
T Consensus 190 ~~gi~v~ELTGD~ql~~te--i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr 267 (1230)
T KOG0952|consen 190 PLGISVRELTGDTQLTKTE--IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLR 267 (1230)
T ss_pred cccceEEEecCcchhhHHH--HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHH
Confidence 7788899999998865444 367899999999885433322 23456789999999999987533 233333333
Q ss_pred ---cCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhh
Q 037446 253 ---SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329 (1165)
Q Consensus 253 ---~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~ 329 (1165)
......|++|||||.+|- .++...|...... .+. ||.. .++|
T Consensus 268 ~vessqs~IRivgLSATlPN~----eDvA~fL~vn~~~-------glf-sFd~-----------------------~yRP 312 (1230)
T KOG0952|consen 268 LVESSQSMIRIVGLSATLPNY----EDVARFLRVNPYA-------GLF-SFDQ-----------------------RYRP 312 (1230)
T ss_pred HHHhhhhheEEEEeeccCCCH----HHHHHHhcCCCcc-------cee-eecc-----------------------cccc
Confidence 245668999999999874 3344333321000 000 0000 0000
Q ss_pred HHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHH
Q 037446 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409 (1165)
Q Consensus 330 ~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~ 409 (1165)
.-.+ ..| .|.+..-...
T Consensus 313 vpL~------------------------~~~-----------------------------------iG~k~~~~~~---- 329 (1230)
T KOG0952|consen 313 VPLT------------------------QGF-----------------------------------IGIKGKKNRQ---- 329 (1230)
T ss_pred ccee------------------------eeE-----------------------------------Eeeecccchh----
Confidence 0000 000 0000000000
Q ss_pred hhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCC-
Q 037446 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL- 488 (1165)
Q Consensus 410 ~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~- 488 (1165)
.... ....+.+++.+.+. .++.++|||.+|..+...++.|.+.+..
T Consensus 330 -----------------~~~~--------~d~~~~~kv~e~~~--------~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~ 376 (1230)
T KOG0952|consen 330 -----------------QKKN--------IDEVCYDKVVEFLQ--------EGHQVLVFVHSRNETIRTAKKLRERAETN 376 (1230)
T ss_pred -----------------hhhh--------HHHHHHHHHHHHHH--------cCCeEEEEEecChHHHHHHHHHHHHHHhc
Confidence 0000 00123344555553 4899999999999999888888665211
Q ss_pred -ccceeeec-----------ccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEE----eccC--
Q 037446 489 -VKATEFIG-----------QSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC----FDAN-- 550 (1165)
Q Consensus 489 -i~~~~l~G-----------~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~----~D~p-- 550 (1165)
.....+++ ++.|.+|.||...+|..+.+.|..|.++||+||..++.|+|+|+--++|- ||.-
T Consensus 377 g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg 456 (1230)
T KOG0952|consen 377 GEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKG 456 (1230)
T ss_pred CcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccC
Confidence 22223332 33467899999999999999999999999999999999999997655553 3332
Q ss_pred ----CCHHHHHHHHhhcCCCC---CCccceecChh
Q 037446 551 ----VSPLRMIQRMGRTGRKH---DGRIPHIFKPE 578 (1165)
Q Consensus 551 ----~S~~~yiQriGRagR~G---qGkiv~v~~~d 578 (1165)
...-+-+|..|||||-. .|..+++...|
T Consensus 457 ~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 457 SFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred ceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 35667899999999987 36666665544
No 97
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=4.1e-23 Score=249.49 Aligned_cols=130 Identities=20% Similarity=0.221 Sum_probs=98.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcC-----
Q 037446 127 LVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK----- 201 (1165)
Q Consensus 127 Il~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~----- 201 (1165)
||.++||+|||.+|+..+...+. .++++|||+|+++|+.|+.+.|++.++. .+..++|+.+..++...|.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~--~g~~vLvlvP~i~L~~Q~~~~l~~~f~~---~v~vlhs~~~~~er~~~~~~~~~g 75 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA--LGKSVLVLVPEIALTPQMIQRFKYRFGS---QVAVLHSGLSDSEKLQAWRKVKNG 75 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHHhCC---cEEEEECCCCHHHHHHHHHHHHcC
Confidence 57899999999999887776654 3568999999999999999999998764 3677888887666544432
Q ss_pred CccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCcc----ch-HHHHHHHHcCCCCCeEEEEccCCC
Q 037446 202 TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNY----AY-CTAIRELMSVPVQLRILALTATPG 268 (1165)
Q Consensus 202 ~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~----~~-~~~l~~L~~~~~~~riL~LSATP~ 268 (1165)
..+|+|+|+..+. ..+.++++|||||+|...-.. .| ...+..++......++|++||||.
T Consensus 76 ~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 76 EILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS 140 (505)
T ss_pred CCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 4799999998773 367889999999999875311 12 222333444456678999999986
No 98
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.91 E-value=6.1e-23 Score=263.61 Aligned_cols=324 Identities=22% Similarity=0.245 Sum_probs=210.8
Q ss_pred CCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHH-HhCCCCeEEEEecChhHHHHHHHHHHHHhCC
Q 037446 102 WIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFF-RWFPDGKIVFAAPSRPLVMQQIEACHNIVGI 179 (1165)
Q Consensus 102 ~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L-~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~ 179 (1165)
..+|..+....+..+++..+.. +.+||+++||||||.+ +|.+.+- .....+++++.-|+|--+...++.+.+.+|.
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~ 137 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGT 137 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCC
Confidence 4455566667777888888877 4578889999999985 4543321 1223457788889998888888888877776
Q ss_pred CCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccc-cccCccchHHHHHHHHcCCCCC
Q 037446 180 PQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAH-RATGNYAYCTAIRELMSVPVQL 258 (1165)
Q Consensus 180 ~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAH-rl~~~~~~~~~l~~L~~~~~~~ 258 (1165)
+....+.+.-.... ....+.+|.|+|+++|+..+.... .+.++++||||||| +.++.......++.++......
T Consensus 138 ~lG~~VGY~vR~~~----~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdL 212 (1283)
T TIGR01967 138 PLGEKVGYKVRFHD----QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDL 212 (1283)
T ss_pred CcceEEeeEEcCCc----ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCC
Confidence 53222222101110 112467899999999999887644 47889999999999 5776422333466676666678
Q ss_pred eEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhc
Q 037446 259 RILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIG 338 (1165)
Q Consensus 259 riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~ 338 (1165)
++|+||||... +.+...+ .... .+.+........ .
T Consensus 213 KlIlmSATld~--~~fa~~F----------------------~~ap--vI~V~Gr~~PVe-------------v------ 247 (1283)
T TIGR01967 213 KIIITSATIDP--ERFSRHF----------------------NNAP--IIEVSGRTYPVE-------------V------ 247 (1283)
T ss_pred eEEEEeCCcCH--HHHHHHh----------------------cCCC--EEEECCCcccce-------------e------
Confidence 99999999852 2233222 1111 111110000000 0
Q ss_pred ccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcc
Q 037446 339 LLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFM 418 (1165)
Q Consensus 339 vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll 418 (1165)
.|..... ....
T Consensus 248 -----~Y~~~~~---------------------------------------------~~~~------------------- 258 (1283)
T TIGR01967 248 -----RYRPLVE---------------------------------------------EQED------------------- 258 (1283)
T ss_pred -----EEecccc---------------------------------------------cccc-------------------
Confidence 0000000 0000
Q ss_pred cchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC-Cccceeeecc
Q 037446 419 SKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD-LVKATEFIGQ 497 (1165)
Q Consensus 419 ~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~-~i~~~~l~G~ 497 (1165)
....++..+++.+..+.. ...+.+|||+++...++.+++.|...+. .+.+..+|
T Consensus 259 --------------------~~~~~~~~i~~~I~~l~~---~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLh-- 313 (1283)
T TIGR01967 259 --------------------DDLDQLEAILDAVDELFA---EGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLY-- 313 (1283)
T ss_pred --------------------hhhhHHHHHHHHHHHHHh---hCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEecc--
Confidence 000122333333433322 1357899999999999999999987652 13344444
Q ss_pred cccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccC------------------CCHHHHHHH
Q 037446 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN------------------VSPLRMIQR 559 (1165)
Q Consensus 498 ~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p------------------~S~~~yiQr 559 (1165)
|+|++++|.++++.+ +..+|||||+++++|||||+|++||+++.+ .|.+.|.||
T Consensus 314 ------g~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QR 385 (1283)
T TIGR01967 314 ------ARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQR 385 (1283)
T ss_pred ------CCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHH
Confidence 589999999986643 346899999999999999999999998843 467899999
Q ss_pred HhhcCCCCCCccceecChhH
Q 037446 560 MGRTGRKHDGRIPHIFKPEV 579 (1165)
Q Consensus 560 iGRagR~GqGkiv~v~~~d~ 579 (1165)
.||+||.|+|.++.+|..+.
T Consensus 386 aGRAGR~~~G~cyRLyte~~ 405 (1283)
T TIGR01967 386 KGRCGRVAPGICIRLYSEED 405 (1283)
T ss_pred hhhhCCCCCceEEEecCHHH
Confidence 99999999999999998654
No 99
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.91 E-value=2.7e-24 Score=237.75 Aligned_cols=310 Identities=19% Similarity=0.278 Sum_probs=191.6
Q ss_pred eEEEEecChhHHHHHHHH---HHHHhCCCCceEEEEeCCCC-hHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEE
Q 037446 155 KIVFAAPSRPLVMQQIEA---CHNIVGIPQEWTIDMTGQIS-PTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230 (1165)
Q Consensus 155 rvLILvPtr~La~Q~~~e---~~kl~g~~~~~v~~l~G~~~-~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lV 230 (1165)
.+||+-|.++|++|.... |+.....|..+..++.|+.. ..+...+..+.+|+|+||+++...+..+.+.+..+.++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 479999999999998885 44445555555556666554 44455666789999999999999999999999999999
Q ss_pred EEcccccccCccchHHHHHHHHc-------CCCCCeEEEEccCCCC-ChHHHHHHHHhhccccccccCCchhhhhhhhcc
Q 037446 231 VIDEAHRATGNYAYCTAIRELMS-------VPVQLRILALTATPGS-KQQTIQHIIDNLYISTLEYRNESDQDVSSYVHN 302 (1165)
Q Consensus 231 VIDEAHrl~~~~~~~~~l~~L~~-------~~~~~riL~LSATP~~-~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~ 302 (1165)
|+|||+-+++. +|...+.++.. -....+.+.+|||... .+..+.+-+ ++-
T Consensus 368 vlDead~lL~q-gy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~erv---------------------mhf 425 (725)
T KOG0349|consen 368 VLDEADLLLGQ-GYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERV---------------------MHF 425 (725)
T ss_pred Eecchhhhhhc-ccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhh---------------------ccC
Confidence 99999999984 77777666653 1245678999999732 111111100 000
Q ss_pred CceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHH
Q 037446 303 RKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA 382 (1165)
Q Consensus 303 ~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 382 (1165)
+..+.+..+ ..+.+..+.+... .||. +...+..
T Consensus 426 ----ptwVdLkge-D~vpetvHhvv~l------------------v~p~------------------------~d~sw~~ 458 (725)
T KOG0349|consen 426 ----PTWVDLKGE-DLVPETVHHVVKL------------------VCPS------------------------VDGSWCD 458 (725)
T ss_pred ----ceeEecccc-cccchhhccceee------------------cCCc------------------------cCccHHH
Confidence 001111000 0000000000000 0000 0000000
Q ss_pred HHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCC
Q 037446 383 LITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462 (1165)
Q Consensus 383 L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~ 462 (1165)
++..+...+....-..+ .+ ..+ .+.......++ |-+.-+..+.++ .-
T Consensus 459 ------lr~~i~td~vh~kdn~~-----pg----~~S-pe~~s~a~kil-----------kgEy~v~ai~~h------~m 505 (725)
T KOG0349|consen 459 ------LRQFIETDKVHTKDNLL-----PG----QVS-PENPSSATKIL-----------KGEYGVVAIRRH------AM 505 (725)
T ss_pred ------HhhhhccCCcccccccc-----cc----cCC-CCChhhhhHHh-----------cCchhhhhhhhh------cc
Confidence 00000000000000000 00 000 00000000000 011122233333 35
Q ss_pred CeEEEEeCchHHHHHHHHHHHhcC-CCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCC
Q 037446 463 SRVIIFSNFRGSVRDIMNALATIG-DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541 (1165)
Q Consensus 463 ~kvIVF~~sr~~ae~L~~~L~~~g-~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~v 541 (1165)
.++||||.++..|+.|.+++++.| ..+.++.+|| +..+.+|.+-++.|+.+..++|||||+++|||||..+
T Consensus 506 dkaiifcrtk~dcDnLer~~~qkgg~~~scvclhg--------DrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~ 577 (725)
T KOG0349|consen 506 DKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHG--------DRKPDERKANLESFKKFDVKFLICTDVAARGLDITGL 577 (725)
T ss_pred CceEEEEeccccchHHHHHHHHcCCccceeEEEec--------CCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCC
Confidence 799999999999999999999885 3578888887 6689999999999999999999999999999999999
Q ss_pred CEEEEeccCCCHHHHHHHHhhcCCCCC-Ccccee
Q 037446 542 DLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHI 574 (1165)
Q Consensus 542 d~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v 574 (1165)
-++|+...|-....|+||+||+||... |-.+.+
T Consensus 578 p~~invtlpd~k~nyvhrigrvgraermglaisl 611 (725)
T KOG0349|consen 578 PFMINVTLPDDKTNYVHRIGRVGRAERMGLAISL 611 (725)
T ss_pred ceEEEEecCcccchhhhhhhccchhhhcceeEEE
Confidence 999999999999999999999999874 654333
No 100
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=7.6e-23 Score=252.25 Aligned_cols=426 Identities=13% Similarity=0.095 Sum_probs=243.4
Q ss_pred CChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEe
Q 037446 109 PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMT 188 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~ 188 (1165)
.+++-|.-+-- ++..+-|..++||+|||++|.+|++..... +..++||+||+.||.|.++.+..++...++.+..+.
T Consensus 82 ~~ydvQliGg~-~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~--G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~ 158 (896)
T PRK13104 82 RHFDVQLIGGM-VLHEGNIAEMRTGEGKTLVATLPAYLNAIS--GRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIY 158 (896)
T ss_pred CcchHHHhhhh-hhccCccccccCCCCchHHHHHHHHHHHhc--CCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEe
Confidence 34444544433 234677899999999999999999866543 356999999999999999999998887788899999
Q ss_pred CCCChHHHHhhcCCccEEEEcHHHH-HHHHHcC-ccCC-----CCccEEEEcccccccCccchHHHHHHHHcCCCCCeEE
Q 037446 189 GQISPTKRASFWKTKRVFFVTPQVL-EKDIQSG-TCLM-----KYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRIL 261 (1165)
Q Consensus 189 G~~~~~~~~~l~~~~dIlVaTpq~L-~~~l~~~-~~~l-----~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL 261 (1165)
|+.+...+... ..++|+|+||+.| .+++... .+.+ ..+.++||||||.++=+.. ..+ |
T Consensus 159 gg~~~~~r~~~-y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeA-----------rtP---L 223 (896)
T PRK13104 159 PDMSHKEKQEA-YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEA-----------RTP---L 223 (896)
T ss_pred CCCCHHHHHHH-hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhcc-----------CCc---e
Confidence 99887666543 3689999999999 7777654 2223 5799999999999864210 111 2
Q ss_pred EEccCCCCCh---HHHHHHHHhhccc-------cccc---------cCCchhhhhhhhccCce----EEEEeccchhHHH
Q 037446 262 ALTATPGSKQ---QTIQHIIDNLYIS-------TLEY---------RNESDQDVSSYVHNRKI----ELIEVEMGQEAVE 318 (1165)
Q Consensus 262 ~LSATP~~~~---~~l~~Li~~L~is-------~i~~---------~~~~~~~i~~y~~~~~~----~~i~v~~~~~~~~ 318 (1165)
.+|+.+.... ..+..++..|.-. .+.+ .......+..++....+ ... + ......
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l-~--~~~~~~ 300 (896)
T PRK13104 224 IISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESL-Y--HASNIM 300 (896)
T ss_pred eeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccc-c--Cchhhh
Confidence 2333322111 0111111111110 0000 00001111122211000 000 0 000111
Q ss_pred HHHHHHHHHhhHHHHHhhhc---------cccc---c--cccCCch--hhhhhhhhhhhcCCCCCCCcccchhhHHHHHH
Q 037446 319 INNRIWEVIRPYTSRLSAIG---------LLQN---R--DYQTLSP--VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA 382 (1165)
Q Consensus 319 i~~~l~~~i~~~~~rl~~~~---------vl~~---~--~~~~l~p--~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 382 (1165)
....+...++.......... +++. + +-..|+- .+...+++.+.-... -...+.....++|..
T Consensus 301 ~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e--~~t~AsIT~Qn~Fr~ 378 (896)
T PRK13104 301 LMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNE--NQTLASITFQNFFRM 378 (896)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCC--ceeeeeehHHHHHHh
Confidence 11222222222211111110 0000 0 0001111 111222222211110 011122233333322
Q ss_pred HHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCC
Q 037446 383 LITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462 (1165)
Q Consensus 383 L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~ 462 (1165)
.. ...|++.........+.+.+...++.-++.....+...... .......|+.++++.+.+... .+
T Consensus 379 Y~---------kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~-v~~t~~~k~~av~~~i~~~~~----~g 444 (896)
T PRK13104 379 YN---------KLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADL-VYLTQADKFQAIIEDVRECGV----RK 444 (896)
T ss_pred cc---------hhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCe-EEcCHHHHHHHHHHHHHHHHh----CC
Confidence 21 12344433333333333332222222111111111111111 122346789999998877655 79
Q ss_pred CeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCC-
Q 037446 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV- 541 (1165)
Q Consensus 463 ~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~v- 541 (1165)
.++||||++++.++.|+..|.+.| ++...++| .+.+.+|..+.+.|+.|. |+|||++++||+||.=-
T Consensus 445 ~PVLVgt~Sie~sE~ls~~L~~~g--i~h~vLna--------k~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lgg 512 (896)
T PRK13104 445 QPVLVGTVSIEASEFLSQLLKKEN--IKHQVLNA--------KFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGG 512 (896)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHcC--CCeEeecC--------CCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCC
Confidence 999999999999999999999999 88888887 678999999999999994 99999999999999521
Q ss_pred -------------------------------------CEEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHHH
Q 037446 542 -------------------------------------DLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVE 583 (1165)
Q Consensus 542 -------------------------------------d~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~~ 583 (1165)
=+||-...+.|.....|-.||+||.| +|..-+++.-+...+.
T Consensus 513 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~~ 592 (896)
T PRK13104 513 SLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMR 592 (896)
T ss_pred chhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHH
Confidence 27888999999999999999999999 5887777776655443
No 101
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.90 E-value=4.7e-22 Score=248.20 Aligned_cols=367 Identities=16% Similarity=0.177 Sum_probs=204.9
Q ss_pred CCCChHHHHHHHHHhhc-----------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 107 NVPVRDYQFAITKTALF-----------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~-----------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
.+-+|.||..++..+.. +++||+++||||||++++..+..++......++|||+|+.+|..||.++|..
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 46689999999988743 3699999999999999999988877666778999999999999999999998
Q ss_pred HhCCCCceEEEEeCCCChHH-HHhhc-CCccEEEEcHHHHHHHHHc--CccCCCCcc-EEEEcccccccCccchHHHHHH
Q 037446 176 IVGIPQEWTIDMTGQISPTK-RASFW-KTKRVFFVTPQVLEKDIQS--GTCLMKYLV-CLVIDEAHRATGNYAYCTAIRE 250 (1165)
Q Consensus 176 l~g~~~~~v~~l~G~~~~~~-~~~l~-~~~dIlVaTpq~L~~~l~~--~~~~l~~~~-lVVIDEAHrl~~~~~~~~~l~~ 250 (1165)
+.... + .+..+... ...+. ....|+|+|.|+|...+.. ..+.....+ +||+|||||.... .+...++
T Consensus 316 ~~~~~---~---~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~-~~~~~l~- 387 (667)
T TIGR00348 316 LQKDC---A---ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG-ELAKNLK- 387 (667)
T ss_pred hCCCC---C---cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch-HHHHHHH-
Confidence 64211 0 11112211 12222 2468999999999864332 122222222 7999999998653 4443333
Q ss_pred HHcCCCCCeEEEEccCCCCChH-HHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhh
Q 037446 251 LMSVPVQLRILALTATPGSKQQ-TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329 (1165)
Q Consensus 251 L~~~~~~~riL~LSATP~~~~~-~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~ 329 (1165)
...++..+|||||||..... .-...+... .....+.. .+.+.+.+.....+.+........+
T Consensus 388 --~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~-fg~~i~~Y----~~~~AI~dG~~~~i~Y~~~~~~~~~---------- 450 (667)
T TIGR00348 388 --KALKNASFFGFTGTPIFKKDRDTSLTFAYV-FGRYLHRY----FITDAIRDGLTVKIDYEDRLPEDHL---------- 450 (667)
T ss_pred --hhCCCCcEEEEeCCCcccccccccccccCC-CCCeEEEe----eHHHHhhcCCeeeEEEEecchhhcc----------
Confidence 34455678999999964311 111111100 00000000 0111111111111111100000000
Q ss_pred HHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchH-HHHHHHHH
Q 037446 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRP-AYEMLEEK 408 (1165)
Q Consensus 330 ~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~-~~~~L~~~ 408 (1165)
. ...+...+..+. .... .+..+ ....+...
T Consensus 451 -------------------~-----------------------~~~l~~~~~~~~------~~~~-~~~~~~~~~~l~~~ 481 (667)
T TIGR00348 451 -------------------D-----------------------RKKLDAFFDEIF------ELLP-ERIREITKESLKEK 481 (667)
T ss_pred -------------------C-----------------------hHHHHHHHHHHH------Hhhh-ccccHHHHHHHHHH
Confidence 0 000000000000 0000 00000 00000000
Q ss_pred HhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhccc-CCCCCeEEEEeCchHHHHHHHHHHHhcCC
Q 037446 409 LKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTK-DPKHSRVIIFSNFRGSVRDIMNALATIGD 487 (1165)
Q Consensus 409 ~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~-~~~~~kvIVF~~sr~~ae~L~~~L~~~g~ 487 (1165)
....-.......++..+.+.+.+++... ...+.+++|||.++.+|..+.+.|.+..+
T Consensus 482 ----------------------~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~ 539 (667)
T TIGR00348 482 ----------------------LQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELN 539 (667)
T ss_pred ----------------------HHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcc
Confidence 0000001122455666777777776411 12358999999999999999999877632
Q ss_pred C---ccceeeecccccc---------cCCCCC----HHHHHHHHHHHhc-CCceEEEEcccccccccccCCCEEEEeccC
Q 037446 488 L---VKATEFIGQSSGK---------ASKGQS----QKVQQAVLEKFRA-GGYNVIVATSIGEEGLDIMEVDLVICFDAN 550 (1165)
Q Consensus 488 ~---i~~~~l~G~~~g~---------~~ggms----~~eR~~il~~Fr~-g~~~VLVATda~~eGLDIp~vd~VI~~D~p 550 (1165)
. ..++.++|..... +....+ .+....++++|++ +.+++||+++++.+|+|.|.+++++...+.
T Consensus 540 ~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKpl 619 (667)
T TIGR00348 540 EKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPL 619 (667)
T ss_pred cccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccc
Confidence 2 2334444422100 000011 1134578999986 678999999999999999999999977766
Q ss_pred CCHHHHHHHHhhcCCC-CCCc
Q 037446 551 VSPLRMIQRMGRTGRK-HDGR 570 (1165)
Q Consensus 551 ~S~~~yiQriGRagR~-GqGk 570 (1165)
.+ ..++|++||+.|. +++|
T Consensus 620 k~-h~LlQai~R~nR~~~~~K 639 (667)
T TIGR00348 620 KY-HGLLQAIARTNRIDGKDK 639 (667)
T ss_pred cc-cHHHHHHHHhccccCCCC
Confidence 65 5689999999994 5444
No 102
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.90 E-value=8.4e-22 Score=222.10 Aligned_cols=391 Identities=12% Similarity=0.141 Sum_probs=238.6
Q ss_pred ChHHHHHHHHHhhc--CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEE
Q 037446 110 VRDYQFAITKTALF--SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDM 187 (1165)
Q Consensus 110 lr~yQ~eal~~ll~--rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l 187 (1165)
|.+||.+.+..++. .+++++++||.|||++++..+..+.. ....|||||. +|-..|.++|.+|++...- +.++
T Consensus 199 LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra---EwplliVcPA-svrftWa~al~r~lps~~p-i~vv 273 (689)
T KOG1000|consen 199 LLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA---EWPLLIVCPA-SVRFTWAKALNRFLPSIHP-IFVV 273 (689)
T ss_pred hCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh---cCcEEEEecH-HHhHHHHHHHHHhcccccc-eEEE
Confidence 67889999999987 67999999999999999887766643 4569999999 9999999999999875432 3444
Q ss_pred eCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcC-CCCCeEEEEccC
Q 037446 188 TGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV-PVQLRILALTAT 266 (1165)
Q Consensus 188 ~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~-~~~~riL~LSAT 266 (1165)
.++.+.-. .+-....|.|.+|+.+..+-. .+.-..|.+||+||+|++++ +-....+.+..+ ..-.++|+||||
T Consensus 274 ~~~~D~~~--~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~--sktkr~Ka~~dllk~akhvILLSGT 347 (689)
T KOG1000|consen 274 DKSSDPLP--DVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKD--SKTKRTKAATDLLKVAKHVILLSGT 347 (689)
T ss_pred ecccCCcc--ccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhc--cchhhhhhhhhHHHHhhheEEecCC
Confidence 44433210 111235799999999876543 34445699999999999987 333334444432 233578999999
Q ss_pred CCCCh-HHHHHHHHhhccccccccCCchhhhhhhhccCceEEEE-eccchhHHHHHHHHHHHHhhHHHHHhhhccccccc
Q 037446 267 PGSKQ-QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIE-VEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRD 344 (1165)
Q Consensus 267 P~~~~-~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~-v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~ 344 (1165)
|.-.. .+++..+.... -.+....-+.-.+|+....+.... +.......++.--+. ...++|..+..+
T Consensus 348 PavSRP~elytqi~avd---~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~---k~lMIRRlK~dv----- 416 (689)
T KOG1000|consen 348 PAVSRPSELYTQIRAVD---HTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLF---KRLMIRRLKADV----- 416 (689)
T ss_pred cccCCchhhhhhhhhhc---ccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHH---HHHHHHHHHHHH-----
Confidence 94221 22333322211 111112222334555544433222 222222222221111 222333333332
Q ss_pred ccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhH
Q 037446 345 YQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDI 424 (1165)
Q Consensus 345 ~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~ 424 (1165)
....+++-.......-+..-+ ....+...-.++........+
T Consensus 417 ----------------L~qLPpKrr~Vv~~~~gr~da-------------------~~~~lv~~a~~~t~~~~~e~~--- 458 (689)
T KOG1000|consen 417 ----------------LKQLPPKRREVVYVSGGRIDA-------------------RMDDLVKAAADYTKVNSMERK--- 458 (689)
T ss_pred ----------------HhhCCccceEEEEEcCCccch-------------------HHHHHHHHhhhcchhhhhhhh---
Confidence 222222211110000000000 000000000000000000000
Q ss_pred HHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCC
Q 037446 425 RKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASK 504 (1165)
Q Consensus 425 ~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~g 504 (1165)
.... ...+....-.|+.++.+.|..++--...++.|.+|||......+-+...+.+.+ +..+.+.|
T Consensus 459 -~~~l---~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~--vg~IRIDG-------- 524 (689)
T KOG1000|consen 459 -HESL---LLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRK--VGSIRIDG-------- 524 (689)
T ss_pred -hHHH---HHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcC--CCeEEecC--------
Confidence 0000 001112335688889998887543245678999999999999999999999988 77777777
Q ss_pred CCCHHHHHHHHHHHhcC-Cce-EEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCcccee
Q 037446 505 GQSQKVQQAVLEKFRAG-GYN-VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHI 574 (1165)
Q Consensus 505 gms~~eR~~il~~Fr~g-~~~-VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv~v 574 (1165)
..+...|....+.|+.. +.. -+++..+++.||++.+++.||....+|||..++|+-.|++|.||...+.+
T Consensus 525 st~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v 596 (689)
T KOG1000|consen 525 STPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFV 596 (689)
T ss_pred CCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeE
Confidence 56889999999999954 444 46788999999999999999999999999999999999999998664433
No 103
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.90 E-value=1.3e-23 Score=245.56 Aligned_cols=367 Identities=18% Similarity=0.229 Sum_probs=241.0
Q ss_pred CCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEE
Q 037446 107 NVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTI 185 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~ 185 (1165)
+++|-++|..++.-+-. ..+||.|.|.+|||.+|-.+|...++. +.|+++..|-++|..|-++++..-|+. |+
T Consensus 127 PF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--kQRVIYTSPIKALSNQKYREl~~EF~D----VG 200 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--KQRVIYTSPIKALSNQKYRELLEEFKD----VG 200 (1041)
T ss_pred CcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--cCeEEeeChhhhhcchhHHHHHHHhcc----cc
Confidence 47899999999988876 789999999999999998888877763 568999999999999999999988774 77
Q ss_pred EEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEcc
Q 037446 186 DMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTA 265 (1165)
Q Consensus 186 ~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSA 265 (1165)
+++|+.... ..+..+|+|.+.|.+++-++.-.+..+.+||+||.|.|.+...---+-..|.-++...++++|||
T Consensus 201 LMTGDVTIn------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSA 274 (1041)
T KOG0948|consen 201 LMTGDVTIN------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSA 274 (1041)
T ss_pred eeecceeeC------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEec
Confidence 888887643 57889999999999999998888999999999999999873111011122445788899999999
Q ss_pred CCCCChHHHHHHHHhh-ccccccccCCchhhhhhhhcc---CceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccc
Q 037446 266 TPGSKQQTIQHIIDNL-YISTLEYRNESDQDVSSYVHN---RKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341 (1165)
Q Consensus 266 TP~~~~~~l~~Li~~L-~is~i~~~~~~~~~i~~y~~~---~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~ 341 (1165)
|.+|..+...|+..-- ++.++.+...-...+..|+.. .....+.-..+.-.++ .
T Consensus 275 TiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~Fred---n------------------- 332 (1041)
T KOG0948|consen 275 TIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFRED---N------------------- 332 (1041)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchH---H-------------------
Confidence 9999877666664321 233333332222233333211 1111111111000000 0
Q ss_pred cccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccch
Q 037446 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKN 421 (1165)
Q Consensus 342 ~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~ 421 (1165)
+......+...+..+.......+.+.|....
T Consensus 333 --------------------------------------------F~~am~~l~~~~~~~~~~~~~~k~~kG~~~~----- 363 (1041)
T KOG0948|consen 333 --------------------------------------------FQKAMSVLRKAGESDGKKKANKKGRKGGTGG----- 363 (1041)
T ss_pred --------------------------------------------HHHHHHHhhccCCCccccccccccccCCcCC-----
Confidence 0000111111111100000000000000000
Q ss_pred hhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCC-------------
Q 037446 422 EDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL------------- 488 (1165)
Q Consensus 422 ~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~------------- 488 (1165)
.+....-+-.++..+.. ....++|||+=+++.|+.++-.+.+....
T Consensus 364 ---------------~~~~~s~i~kiVkmi~~------~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~ 422 (1041)
T KOG0948|consen 364 ---------------KGPGDSDIYKIVKMIME------RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFN 422 (1041)
T ss_pred ---------------CCCCcccHHHHHHHHHh------hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHH
Confidence 01112233344444433 24679999999999999988777654310
Q ss_pred ------------c----cceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEE----ec
Q 037446 489 ------------V----KATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC----FD 548 (1165)
Q Consensus 489 ------------i----~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~----~D 548 (1165)
+ ....+.-.+.|.+|+|+-+--++-+.-.|.+|-+++|+||..++.|||.|+-.+|+. ||
T Consensus 423 nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfD 502 (1041)
T KOG0948|consen 423 NAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFD 502 (1041)
T ss_pred HHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccC
Confidence 0 112222334578999999988899999999999999999999999999998877775 33
Q ss_pred c----CCCHHHHHHHHhhcCCCCC---CccceecCh
Q 037446 549 A----NVSPLRMIQRMGRTGRKHD---GRIPHIFKP 577 (1165)
Q Consensus 549 ~----p~S~~~yiQriGRagR~Gq---Gkiv~v~~~ 577 (1165)
- +.|.-.|+|+.|||||+|- |-+++++..
T Consensus 503 G~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 503 GKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred CcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 2 4678899999999999993 555555543
No 104
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.89 E-value=1.1e-22 Score=243.63 Aligned_cols=345 Identities=18% Similarity=0.220 Sum_probs=210.1
Q ss_pred CCCCChHHHHHHHHHhhc------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCC
Q 037446 106 VNVPVRDYQFAITKTALF------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGI 179 (1165)
Q Consensus 106 t~IQlr~yQ~eal~~ll~------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~ 179 (1165)
+.+.+|.||..++..+.. +++||+|+||+|||.+++..|..+++.+..+|+|||+-+++|+.|....|..++..
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 558999999999998875 56999999999999999999999988888899999999999999999999987533
Q ss_pred CCceEE-EEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcC-----ccCCCCccEEEEcccccccCccchHHHHHHHHc
Q 037446 180 PQEWTI-DMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG-----TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS 253 (1165)
Q Consensus 180 ~~~~v~-~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~-----~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~ 253 (1165)
.... .+.+.... ..++|.++|++++...+... .+....||+||||||||-.- ...+.++.
T Consensus 242 --~~~~n~i~~~~~~-------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~-----~~~~~I~d 307 (875)
T COG4096 242 --GTKMNKIEDKKGD-------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY-----SEWSSILD 307 (875)
T ss_pred --ccceeeeecccCC-------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH-----hhhHHHHH
Confidence 2222 22222211 25799999999999877643 45677799999999999543 22345555
Q ss_pred CCCCCeEEEEccCCCCChH-HHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHH
Q 037446 254 VPVQLRILALTATPGSKQQ-TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTS 332 (1165)
Q Consensus 254 ~~~~~riL~LSATP~~~~~-~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~ 332 (1165)
++...+ +++||||....+ .-..+|+ ++....+ +-...-...|+-.+.+.-+......
T Consensus 308 YFdA~~-~gLTATP~~~~d~~T~~~F~--g~Pt~~Y-sleeAV~DGfLvpy~vi~i~~~~~~------------------ 365 (875)
T COG4096 308 YFDAAT-QGLTATPKETIDRSTYGFFN--GEPTYAY-SLEEAVEDGFLVPYKVIRIDTDFDL------------------ 365 (875)
T ss_pred HHHHHH-HhhccCcccccccccccccC--CCcceee-cHHHHhhccccCCCCceEEeeeccc------------------
Confidence 544433 677999965421 0111111 0000000 0000001111111111111111000
Q ss_pred HHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhc
Q 037446 333 RLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQG 412 (1165)
Q Consensus 333 rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~ 412 (1165)
..+.|..... +.+. ...++.. -+..+...
T Consensus 366 -------------~G~~~~~~se-rek~---------------------------------~g~~i~~----dd~~~~~~ 394 (875)
T COG4096 366 -------------DGWKPDAGSE-REKL---------------------------------QGEAIDE----DDQNFEAR 394 (875)
T ss_pred -------------cCcCcCccch-hhhh---------------------------------hccccCc----cccccccc
Confidence 0000000000 0000 0000000 00000000
Q ss_pred cchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcc--cCCCCCeEEEEeCchHHHHHHHHHHHhcCCCcc
Q 037446 413 SFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKT--KDPKHSRVIIFSNFRGSVRDIMNALATIGDLVK 490 (1165)
Q Consensus 413 ~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~--~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~ 490 (1165)
.+.. ........+.+...|.+++.. ....-.|+||||.+..+|+.+...|....+.++
T Consensus 395 d~dr--------------------~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~ 454 (875)
T COG4096 395 DFDR--------------------TLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN 454 (875)
T ss_pred ccch--------------------hccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc
Confidence 0000 011123345566666666552 122257999999999999999999988754333
Q ss_pred ---ceeeecccccccCCCCCHHHHHHHHHHHhcC--CceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCC
Q 037446 491 ---ATEFIGQSSGKASKGQSQKVQQAVLEKFRAG--GYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 565 (1165)
Q Consensus 491 ---~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g--~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR 565 (1165)
+..++| ..++-+..++.|... -.+|.|+++++..|||+|.|..+|.+..-.|...|.|++||+-|
T Consensus 455 ~~~a~~IT~----------d~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTR 524 (875)
T COG4096 455 GRYAMKITG----------DAEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTR 524 (875)
T ss_pred CceEEEEec----------cchhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccc
Confidence 334444 233344556666643 35799999999999999999999999999999999999999999
Q ss_pred CC
Q 037446 566 KH 567 (1165)
Q Consensus 566 ~G 567 (1165)
.-
T Consensus 525 l~ 526 (875)
T COG4096 525 LC 526 (875)
T ss_pred cC
Confidence 84
No 105
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=5.1e-22 Score=245.01 Aligned_cols=421 Identities=14% Similarity=0.134 Sum_probs=240.3
Q ss_pred CChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHH-HHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEE
Q 037446 109 PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIY-NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDM 187 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil-~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l 187 (1165)
.+++-|.-+.-.+ .++-|..+.||+|||++|.+|++ +.+ .+..+-|++||..||.|-++.+..++...++.+..+
T Consensus 81 ~~~dvQlig~l~L-~~G~Iaem~TGeGKTLva~lpa~l~aL---~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i 156 (830)
T PRK12904 81 RHFDVQLIGGMVL-HEGKIAEMKTGEGKTLVATLPAYLNAL---TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVI 156 (830)
T ss_pred CCCccHHHhhHHh-cCCchhhhhcCCCcHHHHHHHHHHHHH---cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 3444454444333 45679999999999999999996 444 234588999999999999999999887778889999
Q ss_pred eCCCChHHHHhhcCCccEEEEcHHHH-HHHHHcCc------cCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeE
Q 037446 188 TGQISPTKRASFWKTKRVFFVTPQVL-EKDIQSGT------CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRI 260 (1165)
Q Consensus 188 ~G~~~~~~~~~l~~~~dIlVaTpq~L-~~~l~~~~------~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~ri 260 (1165)
.|+.+...+.... .++|+|+|+..| .+.+.... ..+..+.++||||||.++=+.. ..+
T Consensus 157 ~~~~~~~er~~~y-~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeA-----------rtp--- 221 (830)
T PRK12904 157 LSGMSPEERREAY-AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEA-----------RTP--- 221 (830)
T ss_pred cCCCCHHHHHHhc-CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccC-----------CCc---
Confidence 9998887776554 589999999999 66665433 2467899999999999864211 011
Q ss_pred EEEccCCCCCh---HHHHHHHHhhccc-ccccc---------CCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHH
Q 037446 261 LALTATPGSKQ---QTIQHIIDNLYIS-TLEYR---------NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVI 327 (1165)
Q Consensus 261 L~LSATP~~~~---~~l~~Li~~L~is-~i~~~---------~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i 327 (1165)
|.+|+.+.... ..+..+...|... .+.+. ......+..++.-.. . + ......+...+...+
T Consensus 222 LiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~--l--y--~~~~~~~~~~i~~AL 295 (830)
T PRK12904 222 LIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIEN--L--Y--DPENIALVHHLNQAL 295 (830)
T ss_pred eeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCcc--c--c--ChhhhHHHHHHHHHH
Confidence 22233322111 1111112211100 00000 000011111111100 0 0 000111111122222
Q ss_pred hhHHHHHhhhc-c--------ccc---c--cccCCch--hhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 037446 328 RPYTSRLSAIG-L--------LQN---R--DYQTLSP--VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRR 391 (1165)
Q Consensus 328 ~~~~~rl~~~~-v--------l~~---~--~~~~l~p--~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ 391 (1165)
+.......... + ++. + .-..|+- .+...+++.+.-.+.. ...+.....++|.. |. +
T Consensus 296 ~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~--~t~a~It~qn~Fr~----Y~--k 367 (830)
T PRK12904 296 RAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNEN--QTLASITFQNYFRM----YE--K 367 (830)
T ss_pred HHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCc--eeeeeeeHHHHHHh----cc--h
Confidence 22111100000 0 000 0 0011111 1222222222111110 01122222333322 21 1
Q ss_pred HHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCc
Q 037446 392 LLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNF 471 (1165)
Q Consensus 392 ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~s 471 (1165)
..|++.....-...+.+.+...++.-++............ .......|+.++++.+.+... .+.++||||++
T Consensus 368 ---l~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~-i~~t~~~K~~aI~~~I~~~~~----~grpVLIft~S 439 (830)
T PRK12904 368 ---LAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDL-IYKTEKEKFDAVVEDIKERHK----KGQPVLVGTVS 439 (830)
T ss_pred ---hcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCe-EEECHHHHHHHHHHHHHHHHh----cCCCEEEEeCc
Confidence 1344332222222222222222221111101111111111 112446789999999977544 58899999999
Q ss_pred hHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCC----------
Q 037446 472 RGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV---------- 541 (1165)
Q Consensus 472 r~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~v---------- 541 (1165)
+..++.|++.|...| +++..++| .+.+|++.+..|+.+...|+|||++++||+||+--
T Consensus 440 i~~se~Ls~~L~~~g--i~~~vLna----------kq~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~ 507 (830)
T PRK12904 440 IEKSELLSKLLKKAG--IPHNVLNA----------KNHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAAL 507 (830)
T ss_pred HHHHHHHHHHHHHCC--CceEeccC----------chHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhh
Confidence 999999999999998 88888887 47899999999999999999999999999999653
Q ss_pred ----------------------------CEEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHH
Q 037446 542 ----------------------------DLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFV 582 (1165)
Q Consensus 542 ----------------------------d~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~ 582 (1165)
=+||....+.|.....|..||+||.| +|..-+++.-+...+
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 508 LEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 27888999999999999999999999 588777776655444
No 106
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.89 E-value=2.6e-21 Score=250.92 Aligned_cols=426 Identities=19% Similarity=0.222 Sum_probs=260.6
Q ss_pred CCChHHHHHHHHHhh-c-----CCeEEEcCCCchHHHHHHHHHHHHHHhCC--CCeEEEEecChhHHHHHHHHHHHHhCC
Q 037446 108 VPVRDYQFAITKTAL-F-----SNTLVALPTGLGKTLIAAVVIYNFFRWFP--DGKIVFAAPSRPLVMQQIEACHNIVGI 179 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll-~-----rnvIl~a~TGsGKTL~a~lpil~~L~~~~--~~rvLILvPtr~La~Q~~~e~~kl~g~ 179 (1165)
.++++||.++++|+. . .+++++++||.|||++.+..+...+.... .+++|++||+ +++.+|.+++.++..
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~- 414 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAP- 414 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCc-
Confidence 468999999999987 2 68999999999999999888876444433 3689999999 999999999988754
Q ss_pred CCce-EEEEeCCCC-----hHHHHhhcCC-----ccEEEEcHHHHHHHH-HcCccCCCCccEEEEcccccccCccchHHH
Q 037446 180 PQEW-TIDMTGQIS-----PTKRASFWKT-----KRVFFVTPQVLEKDI-QSGTCLMKYLVCLVIDEAHRATGNYAYCTA 247 (1165)
Q Consensus 180 ~~~~-v~~l~G~~~-----~~~~~~l~~~-----~dIlVaTpq~L~~~l-~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~ 247 (1165)
... +....|... .......... .+++++|++.+.... ....+.-..|+++|+||||++++. -...
T Consensus 415 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~--~s~~ 491 (866)
T COG0553 415 -DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND--QSSE 491 (866)
T ss_pred -cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh--hhHH
Confidence 344 667777664 2222222222 799999999999832 123455667999999999999873 3334
Q ss_pred HHHHHcCCCCCeEEEEccCC-CCChHHHHHHHH-hhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHH
Q 037446 248 IRELMSVPVQLRILALTATP-GSKQQTIQHIID-NLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE 325 (1165)
Q Consensus 248 l~~L~~~~~~~riL~LSATP-~~~~~~l~~Li~-~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~ 325 (1165)
.+.+..+... ..+++|+|| .++...++.+++ .+.+..+.- ....+..++..+...................+..
T Consensus 492 ~~~l~~~~~~-~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 492 GKALQFLKAL-NRLDLTGTPLENRLGELWSLLQEFLNPGLLGT---SFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred HHHHHHHhhc-ceeeCCCChHhhhHHHHHHHHHHHhCCccccc---hHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 4444443333 349999999 677777888877 443332221 1223334443332211111111112222233566
Q ss_pred HHhhHHHHHhhhc--ccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHH-----HHHHHH---HHHHHHHHHhh
Q 037446 326 VIRPYTSRLSAIG--LLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEA-----YFGALI---TLYHIRRLLSS 395 (1165)
Q Consensus 326 ~i~~~~~rl~~~~--vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~-----~~~~L~---~l~~i~~ll~~ 395 (1165)
.+.++..|..+.. ++. ..++.........+.. |-..+. ...........
T Consensus 568 ~i~~f~lrr~k~~~~v~~---------------------~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~ 626 (866)
T COG0553 568 LLSPFILRRTKEDVEVLK---------------------ELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEK 626 (866)
T ss_pred HHHHHhhcccccchhHHH---------------------hCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777776665544 211 1111111111111111 111111 00000000000
Q ss_pred CCc--------hHHHHHHHHHHhhcc-chhcccch-hh-HHH-HHHHH--Hh----hhccCCCC-hHHHHHHHHH-HHhh
Q 037446 396 HGI--------RPAYEMLEEKLKQGS-FARFMSKN-ED-IRK-VKLLM--QQ----SISHGAQS-PKLSKMLEVL-VDHF 455 (1165)
Q Consensus 396 ~g~--------~~~~~~L~~~~~~~~-~~~ll~~~-~~-~~~-v~~~l--~~----~~~~~~~s-~Kl~~LlelL-~~~~ 455 (1165)
.+. ..........++.-+ ...+.... .. ... ..... .. .-.....+ .|+..+.++| ....
T Consensus 627 ~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~ 706 (866)
T COG0553 627 ADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLL 706 (866)
T ss_pred hccccccccchhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHH
Confidence 000 000000000000000 00000000 00 000 00000 00 00011223 7889998888 5655
Q ss_pred cccCCCCC--eEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcC--CceEEEEccc
Q 037446 456 KTKDPKHS--RVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG--GYNVIVATSI 531 (1165)
Q Consensus 456 ~~~~~~~~--kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g--~~~VLVATda 531 (1165)
. .+. ++|||++++...+.+...|...+ +....++| +++.+.|..++++|.++ ...+|+++.+
T Consensus 707 ~----~~~~~kvlifsq~t~~l~il~~~l~~~~--~~~~~ldG--------~~~~~~r~~~i~~f~~~~~~~v~lls~ka 772 (866)
T COG0553 707 E----EGHYHKVLIFSQFTPVLDLLEDYLKALG--IKYVRLDG--------STPAKRRQELIDRFNADEEEKVFLLSLKA 772 (866)
T ss_pred h----hcccccEEEEeCcHHHHHHHHHHHHhcC--CcEEEEeC--------CCChhhHHHHHHHhhcCCCCceEEEEecc
Confidence 4 566 99999999999999999999988 77888887 66789999999999986 4568899999
Q ss_pred ccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCccceecCh
Q 037446 532 GEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKP 577 (1165)
Q Consensus 532 ~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv~v~~~ 577 (1165)
++.|+|+..+++||+||++|++....|++.|++|.||.+.+.++..
T Consensus 773 gg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~ 818 (866)
T COG0553 773 GGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRL 818 (866)
T ss_pred cccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEe
Confidence 9999999999999999999999999999999999999998888754
No 107
>PRK09694 helicase Cas3; Provisional
Probab=99.89 E-value=2.8e-21 Score=243.42 Aligned_cols=334 Identities=20% Similarity=0.235 Sum_probs=194.8
Q ss_pred CCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhC--CCCce
Q 037446 107 NVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVG--IPQEW 183 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g--~~~~~ 183 (1165)
..++|++|..+.....+ ..+||.+|||+|||.+++..+..++......+++|..||+++++|.++++.+++. +....
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 35799999987554332 5588999999999999988887766666667999999999999999999876432 11234
Q ss_pred EEEEeCCCChH------------------------HHHh-hcC---CccEEEEcHHHHHHHHHc-CccCCCCc----cEE
Q 037446 184 TIDMTGQISPT------------------------KRAS-FWK---TKRVFFVTPQVLEKDIQS-GTCLMKYL----VCL 230 (1165)
Q Consensus 184 v~~l~G~~~~~------------------------~~~~-l~~---~~dIlVaTpq~L~~~l~~-~~~~l~~~----~lV 230 (1165)
+...+|..... .+.. ..+ -.+|+|+|+..++..... ....+..+ ++|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 55666654311 0000 001 169999999877754332 22223333 489
Q ss_pred EEcccccccCccchHHHHHHHHcC--CCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEE
Q 037446 231 VIDEAHRATGNYAYCTAIRELMSV--PVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELI 308 (1165)
Q Consensus 231 VIDEAHrl~~~~~~~~~l~~L~~~--~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i 308 (1165)
||||+|-+-. .....+..+++. .....+|+||||++... ...++..+.... ..... ..| +.+
T Consensus 444 IiDEVHAyD~--ym~~lL~~~L~~l~~~g~~vIllSATLP~~~--r~~L~~a~~~~~-~~~~~-----~~Y---Plv--- 507 (878)
T PRK09694 444 IVDEVHAYDA--YMYGLLEAVLKAQAQAGGSVILLSATLPATL--KQKLLDTYGGHD-PVELS-----SAY---PLI--- 507 (878)
T ss_pred EEechhhCCH--HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHH--HHHHHHHhcccc-ccccc-----ccc---ccc---
Confidence 9999998833 222333433321 23356899999986542 122332211000 00000 000 000
Q ss_pred EeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHH
Q 037446 309 EVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYH 388 (1165)
Q Consensus 309 ~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~ 388 (1165)
... . ... ...+.+ .... ...+......+
T Consensus 508 t~~-~----------------------~~~---------~~~~~~-------~~~~-~~~~~~~~v~v------------ 535 (878)
T PRK09694 508 TWR-G----------------------VNG---------AQRFDL-------SAHP-EQLPARFTIQL------------ 535 (878)
T ss_pred ccc-c----------------------ccc---------ceeeec-------cccc-cccCcceEEEE------------
Confidence 000 0 000 000000 0000 00000000000
Q ss_pred HHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEE
Q 037446 389 IRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIF 468 (1165)
Q Consensus 389 i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF 468 (1165)
.... .....+ ...+++.+.+... .+.++|||
T Consensus 536 --------------------------~~~~------------------~~~~~~-~~~~l~~i~~~~~----~g~~vLVf 566 (878)
T PRK09694 536 --------------------------EPIC------------------LADMLP-DLTLLQRMIAAAN----AGAQVCLI 566 (878)
T ss_pred --------------------------Eeec------------------cccccC-HHHHHHHHHHHHh----cCCEEEEE
Confidence 0000 000000 0123333333222 47899999
Q ss_pred eCchHHHHHHHHHHHhcC-CCccceeeecccccccCCCCCHHHH----HHHHHHH-hcCC---ceEEEEccccccccccc
Q 037446 469 SNFRGSVRDIMNALATIG-DLVKATEFIGQSSGKASKGQSQKVQ----QAVLEKF-RAGG---YNVIVATSIGEEGLDIM 539 (1165)
Q Consensus 469 ~~sr~~ae~L~~~L~~~g-~~i~~~~l~G~~~g~~~ggms~~eR----~~il~~F-r~g~---~~VLVATda~~eGLDIp 539 (1165)
||+++.|+.+++.|+..+ ....+..+|| +++..+| .++++.| ++|+ ..|||||+++++||||
T Consensus 567 ~NTV~~Aq~ly~~L~~~~~~~~~v~llHs--------rf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI- 637 (878)
T PRK09694 567 CNLVDDAQKLYQRLKELNNTQVDIDLFHA--------RFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL- 637 (878)
T ss_pred ECCHHHHHHHHHHHHhhCCCCceEEEEeC--------CCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-
Confidence 999999999999998764 2245566665 7888888 4678888 5665 4799999999999999
Q ss_pred CCCEEEEeccCCCHHHHHHHHhhcCCCCC
Q 037446 540 EVDLVICFDANVSPLRMIQRMGRTGRKHD 568 (1165)
Q Consensus 540 ~vd~VI~~D~p~S~~~yiQriGRagR~Gq 568 (1165)
+++++|....| ...++||+||++|.+.
T Consensus 638 d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 638 DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 68999998777 6799999999999974
No 108
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=5.5e-22 Score=243.87 Aligned_cols=423 Identities=14% Similarity=0.143 Sum_probs=230.6
Q ss_pred CCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEE
Q 037446 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDM 187 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l 187 (1165)
..+++-|.-+.-.+ ..+-|..+.||.|||+++.+|++.... .+..+-|++|+.-||.|-++.+..++...++.+..+
T Consensus 79 ~~~~dvQlig~l~l-~~G~iaEm~TGEGKTLvA~l~a~l~al--~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i 155 (796)
T PRK12906 79 LRPFDVQIIGGIVL-HEGNIAEMKTGEGKTLTATLPVYLNAL--TGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLN 155 (796)
T ss_pred CCCchhHHHHHHHH-hcCCcccccCCCCCcHHHHHHHHHHHH--cCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEe
Confidence 34555565554444 345599999999999999999876544 456799999999999999999988887777889999
Q ss_pred eCCCChHHHHhhcCCccEEEEcHHHHHHHHHcC-------ccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeE
Q 037446 188 TGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG-------TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRI 260 (1165)
Q Consensus 188 ~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~-------~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~ri 260 (1165)
.|+.+...+... ..++|+++|...|.-++.+. ......+.+.||||+|.++=+... .+
T Consensus 156 ~~~~~~~~r~~~-y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDear-----------tP--- 220 (796)
T PRK12906 156 LNSMSPDEKRAA-YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEAR-----------TP--- 220 (796)
T ss_pred CCCCCHHHHHHH-hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCC-----------Cc---
Confidence 998887776654 47899999998775433222 122456889999999987632110 01
Q ss_pred EEEccCCCCCh---HHHHHHHHhhccc------------ccccc---------CCchhhhhhhhccCceEEEEeccchhH
Q 037446 261 LALTATPGSKQ---QTIQHIIDNLYIS------------TLEYR---------NESDQDVSSYVHNRKIELIEVEMGQEA 316 (1165)
Q Consensus 261 L~LSATP~~~~---~~l~~Li~~L~is------------~i~~~---------~~~~~~i~~y~~~~~~~~i~v~~~~~~ 316 (1165)
+.+|+.+.... ..+..+...|... .+... ......+..++.-. ... ....
T Consensus 221 Liisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~--~l~----~~~~ 294 (796)
T PRK12906 221 LIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLD--NLY----DSEN 294 (796)
T ss_pred eecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCc--ccc----Cchh
Confidence 22222221110 0111111111110 00000 00000111111000 000 0000
Q ss_pred HHHHHHHHHHHhhHHHHHhhhc---------cccc---c--cccCCch--hhhhhhhhhhhcCCCCCCCcccchhhHHHH
Q 037446 317 VEINNRIWEVIRPYTSRLSAIG---------LLQN---R--DYQTLSP--VDLLNSRDKFRQAPPPNLPQIKFGEVEAYF 380 (1165)
Q Consensus 317 ~~i~~~l~~~i~~~~~rl~~~~---------vl~~---~--~~~~l~p--~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~ 380 (1165)
..+...+...+........... +++. + +-..|+- .+...+++.+.-.+... .........+|
T Consensus 295 ~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~--t~a~It~qnfF 372 (796)
T PRK12906 295 TALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQ--TLATITYQNFF 372 (796)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCce--eeeeehHHHHH
Confidence 0011111111111111000000 0000 0 0011111 12222233222111110 11222222222
Q ss_pred HHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCC
Q 037446 381 GALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDP 460 (1165)
Q Consensus 381 ~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~ 460 (1165)
. .|. + ..|++.........+.+.+...++.-++.....+...+.. .......|..++++.+.+...
T Consensus 373 r----~Y~--k---l~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~-i~~t~~~K~~al~~~i~~~~~---- 438 (796)
T PRK12906 373 R----MYK--K---LSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDL-LYPTLDSKFNAVVKEIKERHA---- 438 (796)
T ss_pred H----hcc--h---hhccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCe-EEcCHHHHHHHHHHHHHHHHh----
Confidence 2 221 1 1333332222222222222111111111000000000111 112335688899998876543
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEccccccccccc-
Q 037446 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIM- 539 (1165)
Q Consensus 461 ~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp- 539 (1165)
.+.++||||+++..++.|+..|.+.| ++...++| .+.+.++.-+.++++.| .|+|||++++||+||+
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~g--i~~~~Lna--------~~~~~Ea~ii~~ag~~g--~VtIATnmAGRGtDI~l 506 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEAG--IPHAVLNA--------KNHAKEAEIIMNAGQRG--AVTIATNMAGRGTDIKL 506 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHCC--CCeeEecC--------CcHHHHHHHHHhcCCCc--eEEEEeccccCCCCCCC
Confidence 68999999999999999999999999 88888887 44555555555555555 5999999999999994
Q ss_pred --CCC-----EEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHH
Q 037446 540 --EVD-----LVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFV 582 (1165)
Q Consensus 540 --~vd-----~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~ 582 (1165)
+|. +||+++.|.|...|.|+.||+||.| +|...+++..+...+
T Consensus 507 ~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l~ 557 (796)
T PRK12906 507 GPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 557 (796)
T ss_pred CcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchHH
Confidence 788 9999999999999999999999999 598888877765544
No 109
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.88 E-value=7.1e-22 Score=236.21 Aligned_cols=376 Identities=17% Similarity=0.194 Sum_probs=229.5
Q ss_pred CCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEE
Q 037446 108 VPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID 186 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~ 186 (1165)
+.+-.+|++++..+.. ..+.|+|+|.+|||++|-.+|... .....|+++..|-++|..|-++.|+..||. +..
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala--q~h~TR~iYTSPIKALSNQKfRDFk~tF~D----vgL 369 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA--QKHMTRTIYTSPIKALSNQKFRDFKETFGD----VGL 369 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH--HhhccceEecchhhhhccchHHHHHHhccc----cce
Confidence 5677899999998887 679999999999999977665432 224679999999999999999999998875 458
Q ss_pred EeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHH-HHcCCCCCeEEEEcc
Q 037446 187 MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRE-LMSVPVQLRILALTA 265 (1165)
Q Consensus 187 l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~-L~~~~~~~riL~LSA 265 (1165)
++|+... ...+.++|+|.+.|.+++-++.-...++.+|||||+|.+.+- ...-+..+ +.-++...++|+|||
T Consensus 370 lTGDvqi------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~-eRGvVWEEViIMlP~HV~~IlLSA 442 (1248)
T KOG0947|consen 370 LTGDVQI------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDV-ERGVVWEEVIIMLPRHVNFILLSA 442 (1248)
T ss_pred eecceee------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccc-cccccceeeeeeccccceEEEEec
Confidence 8888764 367899999999999999988878889999999999999763 22222233 335788899999999
Q ss_pred CCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccc
Q 037446 266 TPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDY 345 (1165)
Q Consensus 266 TP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~ 345 (1165)
|.+|..+...|+ ++.+...+.+....... .+| +.
T Consensus 443 TVPN~~EFA~WI-----------------------GRtK~K~IyViST~kRP--------------VPL---------Eh 476 (1248)
T KOG0947|consen 443 TVPNTLEFADWI-----------------------GRTKQKTIYVISTSKRP--------------VPL---------EH 476 (1248)
T ss_pred cCCChHHHHHHh-----------------------hhccCceEEEEecCCCc--------------cce---------EE
Confidence 999886533333 22222222221110000 000 00
Q ss_pred cCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhh-H
Q 037446 346 QTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNED-I 424 (1165)
Q Consensus 346 ~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~-~ 424 (1165)
..++...+.... .....+...|.+.....+. +.......-..... .
T Consensus 477 ~l~t~~~l~kii------------------------------dq~g~fl~~~~~~a~~~~~---~~ak~~~~~~~~~~~~ 523 (1248)
T KOG0947|consen 477 YLYTKKSLFKII------------------------------DQNGIFLLKGIKDAKDSLK---KEAKFVDVEKSDARGG 523 (1248)
T ss_pred EEEeccceehhh------------------------------cccchhhhhcchhhhhhhc---cccccccccccccccc
Confidence 000000000000 0000001112222222221 00000000000000 0
Q ss_pred HHHH-HHHHhhhcc------CCCChHH--HHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCc------
Q 037446 425 RKVK-LLMQQSISH------GAQSPKL--SKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLV------ 489 (1165)
Q Consensus 425 ~~v~-~~l~~~~~~------~~~s~Kl--~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i------ 489 (1165)
.... .--++.... .....|. ...++++... . ...--++||||=+++.|+.-+++|......-
T Consensus 524 rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L-~--k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKse 600 (1248)
T KOG0947|consen 524 RGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHL-R--KKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSE 600 (1248)
T ss_pred ccccccCCcCCCCCCCcccccccccccccchHHHHHHHH-h--hcccCceEEEEEccccHHHHHHHHhccCcccchhHHH
Confidence 0000 000000000 0000111 1233333222 1 2346799999999999999999886543100
Q ss_pred ------c-ceeee----------------cccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEE
Q 037446 490 ------K-ATEFI----------------GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546 (1165)
Q Consensus 490 ------~-~~~l~----------------G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~ 546 (1165)
+ ...+- -.+.+.+|+|+-+--++-+.-.|..|-++||+||..+++|||.|+-.+|+.
T Consensus 601 V~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~ 680 (1248)
T KOG0947|consen 601 VHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFS 680 (1248)
T ss_pred HHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEee
Confidence 0 01111 112357899999999999999999999999999999999999998777764
Q ss_pred ----ec----cCCCHHHHHHHHhhcCCCC---CCccceecChh
Q 037446 547 ----FD----ANVSPLRMIQRMGRTGRKH---DGRIPHIFKPE 578 (1165)
Q Consensus 547 ----~D----~p~S~~~yiQriGRagR~G---qGkiv~v~~~d 578 (1165)
.| .-.+|-.|.|+.|||||+| .|.+++++...
T Consensus 681 Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 681 SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 12 2367999999999999999 47777776543
No 110
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=3.2e-20 Score=228.64 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=118.1
Q ss_pred cCCHHHHHHHH-----HCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec
Q 037446 88 SLCHVQIDAEA-----AKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161 (1165)
Q Consensus 88 ~L~~~Ll~~L~-----~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP 161 (1165)
.+...+...+. ..||..|.. +++||..++..+.. +++|+.++||+|||++|++|++..+.. +..++||+|
T Consensus 68 al~re~~~r~lg~~~~~~G~~~p~~--~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--g~~v~IVTp 143 (970)
T PRK12899 68 GVVKNVCRRLAGTPVEVSGYHQQWD--MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--GKPVHLVTV 143 (970)
T ss_pred CCCHHHHHHHhccccccccccCCCC--CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh--cCCeEEEeC
Confidence 67788888777 577877633 34556666665554 889999999999999999999976643 235899999
Q ss_pred ChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHH-HHHHHcCccCCC-------CccEEEEc
Q 037446 162 SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL-EKDIQSGTCLMK-------YLVCLVID 233 (1165)
Q Consensus 162 tr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L-~~~l~~~~~~l~-------~~~lVVID 233 (1165)
|++||.|..+.+..+....++.+..+.|+.+...+.... .++|+|+||++| .+++..+.+.+. .+.++|||
T Consensus 144 TrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y-~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IID 222 (970)
T PRK12899 144 NDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY-QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIID 222 (970)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc-CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEe
Confidence 999999999999988776677888999998877665444 699999999999 888877655544 56899999
Q ss_pred ccccccC
Q 037446 234 EAHRATG 240 (1165)
Q Consensus 234 EAHrl~~ 240 (1165)
|||.++-
T Consensus 223 EADsmLi 229 (970)
T PRK12899 223 EVDSILI 229 (970)
T ss_pred chhhhhh
Confidence 9999874
No 111
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.87 E-value=1.1e-20 Score=235.28 Aligned_cols=307 Identities=20% Similarity=0.226 Sum_probs=220.6
Q ss_pred CChHHHHHHHHHhhc-------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCC
Q 037446 109 PVRDYQFAITKTALF-------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQ 181 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~ 181 (1165)
+--+=|..+++.+.. -|-|||++.|-|||-+|+-++..... .++.|.|+|||.-||+|.++.|+.-|..-+
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~--~GKQVAvLVPTTlLA~QHy~tFkeRF~~fP 671 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM--DGKQVAVLVPTTLLAQQHYETFKERFAGFP 671 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc--CCCeEEEEcccHHhHHHHHHHHHHHhcCCC
Confidence 444557778877765 47899999999999999888776654 457899999999999999999988776556
Q ss_pred ceEEEEeCCCChHHHHhhcC-----CccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCC
Q 037446 182 EWTIDMTGQISPTKRASFWK-----TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPV 256 (1165)
Q Consensus 182 ~~v~~l~G~~~~~~~~~l~~-----~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~ 256 (1165)
+.+..+.--.+..++..+.+ ..||||+|-.-|.. .+.+.++++|||||-||+.- .-.+. |..+..
T Consensus 672 V~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~k-----dv~FkdLGLlIIDEEqRFGV--k~KEk---LK~Lr~ 741 (1139)
T COG1197 672 VRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSK-----DVKFKDLGLLIIDEEQRFGV--KHKEK---LKELRA 741 (1139)
T ss_pred eeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCC-----CcEEecCCeEEEechhhcCc--cHHHH---HHHHhc
Confidence 77777776666555443332 47999999876643 56789999999999999975 23333 444456
Q ss_pred CCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhh
Q 037446 257 QLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSA 336 (1165)
Q Consensus 257 ~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~ 336 (1165)
+..+|-|||||.+..-.+ .+.+--.++.+......+..+..|+.. .
T Consensus 742 ~VDvLTLSATPIPRTL~M-sm~GiRdlSvI~TPP~~R~pV~T~V~~---------~------------------------ 787 (1139)
T COG1197 742 NVDVLTLSATPIPRTLNM-SLSGIRDLSVIATPPEDRLPVKTFVSE---------Y------------------------ 787 (1139)
T ss_pred cCcEEEeeCCCCcchHHH-HHhcchhhhhccCCCCCCcceEEEEec---------C------------------------
Confidence 788999999996542111 010000011111111111001000000 0
Q ss_pred hcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchh
Q 037446 337 IGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFAR 416 (1165)
Q Consensus 337 ~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ 416 (1165)
T Consensus 788 -------------------------------------------------------------------------------- 787 (1139)
T COG1197 788 -------------------------------------------------------------------------------- 787 (1139)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhHHHHHHHHHhhhccCCCChHHHHHHHH-HHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeee
Q 037446 417 FMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEV-LVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFI 495 (1165)
Q Consensus 417 ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~Llel-L~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~ 495 (1165)
++ ..+.+. ++++. .++++-..+|..+..+.+++.|+..-+..++...|
T Consensus 788 ------------------------d~--~~ireAI~REl~-----RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaH 836 (1139)
T COG1197 788 ------------------------DD--LLIREAILRELL-----RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAH 836 (1139)
T ss_pred ------------------------Ch--HHHHHHHHHHHh-----cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEee
Confidence 00 001111 12222 48899999999999999999999986666666666
Q ss_pred cccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccC-CCHHHHHHHHhhcCCCC-CCccce
Q 037446 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN-VSPLRMIQRMGRTGRKH-DGRIPH 573 (1165)
Q Consensus 496 G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p-~S~~~yiQriGRagR~G-qGkiv~ 573 (1165)
| .|+..+-++++..|.+|+++|||||.+.+.|||||++|++|.-+.. .-.+.+.|..||+||.+ ++.+++
T Consensus 837 G--------QM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYf 908 (1139)
T COG1197 837 G--------QMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYF 908 (1139)
T ss_pred c--------CCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEE
Confidence 5 7999999999999999999999999999999999999999987775 67899999999999999 588888
Q ss_pred ecChhHH
Q 037446 574 IFKPEVQ 580 (1165)
Q Consensus 574 v~~~d~~ 580 (1165)
+|.++..
T Consensus 909 l~p~~k~ 915 (1139)
T COG1197 909 LYPPQKA 915 (1139)
T ss_pred eecCccc
Confidence 8876543
No 112
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.87 E-value=5.4e-21 Score=238.31 Aligned_cols=375 Identities=18% Similarity=0.230 Sum_probs=232.9
Q ss_pred CCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceE
Q 037446 106 VNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWT 184 (1165)
Q Consensus 106 t~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v 184 (1165)
.++.|.++|++++..+.. .+++|+++||+|||+++-.++...+.. +.++++.+|.++|..|.+++|...+|--...+
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--~qrviYTsPIKALsNQKyrdl~~~fgdv~~~v 193 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--GQRVIYTSPIKALSNQKYRDLLAKFGDVADMV 193 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--CCceEeccchhhhhhhHHHHHHHHhhhhhhhc
Confidence 456889999999998887 889999999999999999988777664 45699999999999999999988877433446
Q ss_pred EEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHH--HHHcCCCCCeEEE
Q 037446 185 IDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIR--ELMSVPVQLRILA 262 (1165)
Q Consensus 185 ~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~--~L~~~~~~~riL~ 262 (1165)
++++|+.... .++.++|+|.+.|.+++..+...+.++..||+||+|.+.+. .+..+. .|+.++...++++
T Consensus 194 GL~TGDv~IN------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~--eRG~VWEE~Ii~lP~~v~~v~ 265 (1041)
T COG4581 194 GLMTGDVSIN------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDR--ERGVVWEEVIILLPDHVRFVF 265 (1041)
T ss_pred cceecceeeC------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeecccc--ccchhHHHHHHhcCCCCcEEE
Confidence 7889987753 67899999999999999998888999999999999999873 222222 2445778889999
Q ss_pred EccCCCCChHHHHHHHHhhccccccc-cCCch-hhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhccc
Q 037446 263 LTATPGSKQQTIQHIIDNLYISTLEY-RNESD-QDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLL 340 (1165)
Q Consensus 263 LSATP~~~~~~l~~Li~~L~is~i~~-~~~~~-~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl 340 (1165)
||||.++..+ +...+....-..+.+ .++.. -.+..|+.... .++.++..-.
T Consensus 266 LSATv~N~~E-F~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~-----------------~l~~lvde~~--------- 318 (1041)
T COG4581 266 LSATVPNAEE-FAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGK-----------------GLFDLVDEKK--------- 318 (1041)
T ss_pred EeCCCCCHHH-HHHHHHhccCCCeEEEeecCCCCCeEEEEecCC-----------------ceeeeecccc---------
Confidence 9999998765 333333322111110 00000 01111111110 0000000000
Q ss_pred ccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccc
Q 037446 341 QNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK 420 (1165)
Q Consensus 341 ~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~ 420 (1165)
+ ........+-..|.... ........+... ..........+
T Consensus 319 ---~---~~~~~~~~a~~~l~~~~-~~~~~~~~~~~~------------------------~~a~~~~~~~~-------- 359 (1041)
T COG4581 319 ---K---FNAENFPSANRSLSCFS-EKVRETDDGDVG------------------------RYARRTKALRG-------- 359 (1041)
T ss_pred ---c---chhhcchhhhhhhhccc-hhccccCccccc------------------------cccccccccCC--------
Confidence 0 00000000000000000 000000000000 00000000000
Q ss_pred hhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC-------C-----
Q 037446 421 NEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD-------L----- 488 (1165)
Q Consensus 421 ~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~-------~----- 488 (1165)
....+.+.-.++..|.. ....++|+||=++..|+..+..+..... .
T Consensus 360 ----------------~~~~~~~~~~iv~~l~~------~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~i 417 (1041)
T COG4581 360 ----------------SAKGPAGRPEIVNKLDK------DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREI 417 (1041)
T ss_pred ----------------cccccccchHHHhhhhh------hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHH
Confidence 00011121223333322 2467999999999999988877753210 0
Q ss_pred --------------cc-----ceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEE---
Q 037446 489 --------------VK-----ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC--- 546 (1165)
Q Consensus 489 --------------i~-----~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~--- 546 (1165)
++ ...+.+.+.+.+|+||-+..|..+...|..|..+|++||..++.|+|.|.-++|+-
T Consensus 418 i~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~ 497 (1041)
T COG4581 418 IDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLS 497 (1041)
T ss_pred HHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeE
Confidence 00 00111223357899999999999999999999999999999999999998777663
Q ss_pred -ec----cCCCHHHHHHHHhhcCCCCC---CccceecChh
Q 037446 547 -FD----ANVSPLRMIQRMGRTGRKHD---GRIPHIFKPE 578 (1165)
Q Consensus 547 -~D----~p~S~~~yiQriGRagR~Gq---Gkiv~v~~~d 578 (1165)
+| .+-++..|.|..|||||+|. |.++++..+.
T Consensus 498 K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 498 KFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred EecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 33 35789999999999999993 6666664443
No 113
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.87 E-value=7e-21 Score=232.43 Aligned_cols=320 Identities=21% Similarity=0.314 Sum_probs=211.6
Q ss_pred CChHHHHHHHHHhhc--CCeEEEcCCCchHHHHHHHHHHHHHHhCCC---------CeEEEEecChhHHHHHHHHHHHHh
Q 037446 109 PVRDYQFAITKTALF--SNTLVALPTGLGKTLIAAVVIYNFFRWFPD---------GKIVFAAPSRPLVMQQIEACHNIV 177 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~--rnvIl~a~TGsGKTL~a~lpil~~L~~~~~---------~rvLILvPtr~La~Q~~~e~~kl~ 177 (1165)
+++..|-.+...++. .|+++|||||+|||-++++-|++.+..+.+ .++++|+|.++|++.|...|.+.+
T Consensus 309 sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRl 388 (1674)
T KOG0951|consen 309 SLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRL 388 (1674)
T ss_pred hhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhc
Confidence 578888888888887 799999999999999999999998865432 389999999999999999999988
Q ss_pred CCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHc-C-ccCCCCccEEEEcccccccCccc--hHHHHHHHH-
Q 037446 178 GIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS-G-TCLMKYLVCLVIDEAHRATGNYA--YCTAIRELM- 252 (1165)
Q Consensus 178 g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~-~-~~~l~~~~lVVIDEAHrl~~~~~--~~~~l~~L~- 252 (1165)
...++.|..++|+....... ..+..|+|+||+..--.-++ + .--.+-++++||||.|.+.++.+ ...++.+..
T Consensus 389 a~~GI~V~ElTgD~~l~~~q--ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r 466 (1674)
T KOG0951|consen 389 APLGITVLELTGDSQLGKEQ--IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFR 466 (1674)
T ss_pred cccCcEEEEecccccchhhh--hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHH
Confidence 77788899999997754332 25789999999988433222 1 11123478999999999965422 222222222
Q ss_pred ---cCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhh
Q 037446 253 ---SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329 (1165)
Q Consensus 253 ---~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~ 329 (1165)
.-....+++|||||.+|-. ++...+.--. ..+ . ||. +
T Consensus 467 ~ses~~e~~RlVGLSATLPNy~-DV~~Fl~v~~-~gl----------f-~fd-~-------------------------- 506 (1674)
T KOG0951|consen 467 RSESTEEGSRLVGLSATLPNYE-DVASFLRVDP-EGL----------F-YFD-S-------------------------- 506 (1674)
T ss_pred HhhhcccCceeeeecccCCchh-hhHHHhccCc-ccc----------c-ccC-c--------------------------
Confidence 2345689999999998753 2222211000 000 0 000 0
Q ss_pred HHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHH
Q 037446 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409 (1165)
Q Consensus 330 ~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~ 409 (1165)
.|.. +|-. ++| -|+.
T Consensus 507 --------------syRp-vPL~-----qq~-----------------------------------Igi~---------- 521 (1674)
T KOG0951|consen 507 --------------SYRP-VPLK-----QQY-----------------------------------IGIT---------- 521 (1674)
T ss_pred --------------ccCc-CCcc-----ceE-----------------------------------eccc----------
Confidence 0000 0000 000 0000
Q ss_pred hhccchhcccchhhHHHHHHHHHhhhccCCCChHHH----HHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhc
Q 037446 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLS----KMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI 485 (1165)
Q Consensus 410 ~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~----~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~ 485 (1165)
. .....+++ +..+.+.++.. ..++|||+.+|+++...++.++..
T Consensus 522 ----------e-----------------k~~~~~~qamNe~~yeKVm~~ag-----k~qVLVFVHsRkET~ktA~aIRd~ 569 (1674)
T KOG0951|consen 522 ----------E-----------------KKPLKRFQAMNEACYEKVLEHAG-----KNQVLVFVHSRKETAKTARAIRDK 569 (1674)
T ss_pred ----------c-----------------CCchHHHHHHHHHHHHHHHHhCC-----CCcEEEEEEechHHHHHHHHHHHH
Confidence 0 00000111 12223333332 489999999999988888877632
Q ss_pred -------------CC--------------CccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccc
Q 037446 486 -------------GD--------------LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDI 538 (1165)
Q Consensus 486 -------------g~--------------~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDI 538 (1165)
+. .....-+.-++.+.+|.||+..+|..+.+.|++|.+++||+|..++.|+|+
T Consensus 570 ~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnl 649 (1674)
T KOG0951|consen 570 ALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNL 649 (1674)
T ss_pred HhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCC
Confidence 10 000001111223478999999999999999999999999999999999999
Q ss_pred cCCCEEEE----ecc------CCCHHHHHHHHhhcCCCC
Q 037446 539 MEVDLVIC----FDA------NVSPLRMIQRMGRTGRKH 567 (1165)
Q Consensus 539 p~vd~VI~----~D~------p~S~~~yiQriGRagR~G 567 (1165)
|+-.++|- ||+ +.+|.+..|+.|||||.+
T Consensus 650 pahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~ 688 (1674)
T KOG0951|consen 650 PAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQ 688 (1674)
T ss_pred CcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCc
Confidence 98776663 555 367999999999999987
No 114
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.87 E-value=8.5e-21 Score=203.60 Aligned_cols=181 Identities=21% Similarity=0.208 Sum_probs=151.2
Q ss_pred CCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC---CCCeEEEE
Q 037446 85 FDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF---PDGKIVFA 159 (1165)
Q Consensus 85 Fee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~---~~~rvLIL 159 (1165)
|++ ++++.+.+.+...++. +++++|.+++..+.. +++++.++||+|||++|++++++.+... .++++||+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~-----~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii 75 (203)
T cd00268 1 FEELGLSPELLRGIYALGFE-----KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALIL 75 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCC-----CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEE
Confidence 566 8999999999998876 467788999988876 8999999999999999999999888765 55689999
Q ss_pred ecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-CCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccc
Q 037446 160 APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-KTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRA 238 (1165)
Q Consensus 160 vPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl 238 (1165)
+|+++|+.|+.+.++.+.+.....+..+.|+.........+ .+++|+|+||+.|...+......+.+++++|+||||++
T Consensus 76 ~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~ 155 (203)
T cd00268 76 APTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRM 155 (203)
T ss_pred cCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHh
Confidence 99999999999999998766667778888888875554444 47899999999999998887788889999999999999
Q ss_pred cCccchHHHHHHHHc-CCCCCeEEEEccCCCCCh
Q 037446 239 TGNYAYCTAIRELMS-VPVQLRILALTATPGSKQ 271 (1165)
Q Consensus 239 ~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~ 271 (1165)
.+. ++...+..+.. +....+++++|||+++..
T Consensus 156 ~~~-~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~ 188 (203)
T cd00268 156 LDM-GFEDQIREILKLLPKDRQTLLFSATMPKEV 188 (203)
T ss_pred hcc-ChHHHHHHHHHhCCcccEEEEEeccCCHHH
Confidence 863 66666666553 556789999999998543
No 115
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=4.3e-20 Score=227.34 Aligned_cols=411 Identities=14% Similarity=0.094 Sum_probs=232.9
Q ss_pred cCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCC
Q 037446 123 FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202 (1165)
Q Consensus 123 ~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~ 202 (1165)
.++-|..++||.|||++|.+|++.... .+..+.||+|+..||.|-.+.+..++...++.+..+.|+.+...+... ..
T Consensus 95 ~~G~IaEm~TGEGKTL~a~lp~~l~al--~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~-Y~ 171 (908)
T PRK13107 95 DSNRIAEMRTGEGKTLTATLPAYLNAL--TGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAA-YN 171 (908)
T ss_pred cCCccccccCCCCchHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhc-CC
Confidence 467889999999999999999976544 345599999999999998888888877777788888888877554432 37
Q ss_pred ccEEEEcHHHH-HHHHHcC-ccC-----CCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCCCCChHHHH
Q 037446 203 KRVFFVTPQVL-EKDIQSG-TCL-----MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQ 275 (1165)
Q Consensus 203 ~dIlVaTpq~L-~~~l~~~-~~~-----l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP~~~~~~l~ 275 (1165)
++|+++|+..| .+.+... .+. ...+.++||||||.++-+... .+ |.+|+.+... ..++
T Consensus 172 ~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEAr-----------tP---LIISg~~~~~-~~~y 236 (908)
T PRK13107 172 ADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEAR-----------TP---LIISGAAEDS-SELY 236 (908)
T ss_pred CCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCC-----------Cc---eeecCCCccc-hHHH
Confidence 89999999999 6666544 222 367899999999999864111 22 5567655433 2233
Q ss_pred HHHHhhccccccccCCchhhh---hhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchh-
Q 037446 276 HIIDNLYISTLEYRNESDQDV---SSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPV- 351 (1165)
Q Consensus 276 ~Li~~L~is~i~~~~~~~~~i---~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~- 351 (1165)
..+..+--....-........ ..|.-......+. +.+......+.+ + ...+++... ...+.+.
T Consensus 237 ~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~--LTe~G~~~~e~~-------l---~~~~~~~~~-~~l~~~~~ 303 (908)
T PRK13107 237 IKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVH--FTERGQEKVENL-------L---IERGMLAEG-DSLYSAAN 303 (908)
T ss_pred HHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeee--echHHHHHHHHH-------H---HhCCcccCc-ccccCchh
Confidence 332221100000000000000 0011111111111 222111111111 1 111111000 0011111
Q ss_pred -----hh---hhhhhhhhcCCC-----CCC----------C------cccchhhHHH-------------HHHHHHHHHH
Q 037446 352 -----DL---LNSRDKFRQAPP-----PNL----------P------QIKFGEVEAY-------------FGALITLYHI 389 (1165)
Q Consensus 352 -----~l---~~~~~~~~~~~~-----~~i----------~------~~~~~~l~~~-------------~~~L~~l~~i 389 (1165)
++ ..+..-|.+... ..+ . ...+..+... .-.++.++..
T Consensus 304 ~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~ 383 (908)
T PRK13107 304 ISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQ 383 (908)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHh
Confidence 11 111111111110 000 0 0000000000 0001111111
Q ss_pred HHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEe
Q 037446 390 RRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469 (1165)
Q Consensus 390 ~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~ 469 (1165)
+.- ..|++.....-...+.+-+...++.-++.....+......+ ......|..++++.+.+... .+.++||||
T Consensus 384 Y~k--L~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~i-y~t~~~K~~Aii~ei~~~~~----~GrpVLV~t 456 (908)
T PRK13107 384 YEK--LAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLV-YLTADEKYQAIIKDIKDCRE----RGQPVLVGT 456 (908)
T ss_pred hhH--hhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcE-EeCHHHHHHHHHHHHHHHHH----cCCCEEEEe
Confidence 111 12333222221222222221111111111111111111111 12347899999999887765 799999999
Q ss_pred CchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccC---------
Q 037446 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIME--------- 540 (1165)
Q Consensus 470 ~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~--------- 540 (1165)
.++..++.|+..|...| +++..+++ .+.+.+|..+.+.|+.|. |+|||++++||+||.=
T Consensus 457 ~sv~~se~ls~~L~~~g--i~~~vLna--------k~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~ 524 (908)
T PRK13107 457 VSIEQSELLARLMVKEK--IPHEVLNA--------KFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIE 524 (908)
T ss_pred CcHHHHHHHHHHHHHCC--CCeEeccC--------cccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhh
Confidence 99999999999999998 77777776 678999999999999997 9999999999999962
Q ss_pred ----------------------------CCEEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHHH
Q 037446 541 ----------------------------VDLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVE 583 (1165)
Q Consensus 541 ----------------------------vd~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~~ 583 (1165)
==+||-...+.|.....|..||+||.| +|...+++.-+...+.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~r 596 (908)
T PRK13107 525 ALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMR 596 (908)
T ss_pred hhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHHH
Confidence 127899999999999999999999999 5887777776655443
No 116
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.86 E-value=2e-19 Score=196.09 Aligned_cols=316 Identities=18% Similarity=0.197 Sum_probs=209.8
Q ss_pred CChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCce
Q 037446 109 PVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEW 183 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~ 183 (1165)
+|.++|+.+-+.+.. .+.||.|-||+|||-...-.|.+.+. .++++.+..|+...+...+..++..|. ...
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~--~G~~vciASPRvDVclEl~~Rlk~aF~--~~~ 172 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN--QGGRVCIASPRVDVCLELYPRLKQAFS--NCD 172 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh--cCCeEEEecCcccchHHHHHHHHHhhc--cCC
Confidence 677888888777765 78999999999999865444444443 467999999999999999999988754 345
Q ss_pred EEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccccccc--CccchHHHHHHHHcCCCCCeEE
Q 037446 184 TIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT--GNYAYCTAIRELMSVPVQLRIL 261 (1165)
Q Consensus 184 v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~--~~~~~~~~l~~L~~~~~~~riL 261 (1165)
+..++|+.... -...++|+|...|.+.. +.||++||||+|-.- .+......+++-++ ...-+|
T Consensus 173 I~~Lyg~S~~~------fr~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark--~~g~~I 237 (441)
T COG4098 173 IDLLYGDSDSY------FRAPLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARK--KEGATI 237 (441)
T ss_pred eeeEecCCchh------ccccEEEEehHHHHHHH-------hhccEEEEeccccccccCCHHHHHHHHHhhc--ccCceE
Confidence 77888887753 23688999988887743 348999999999763 22223223333332 334579
Q ss_pred EEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccc
Q 037446 262 ALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341 (1165)
Q Consensus 262 ~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~ 341 (1165)
.|||||++.. ..-+.. .....+.++ .+++
T Consensus 238 ylTATp~k~l---~r~~~~----------------------g~~~~~klp---------~RfH----------------- 266 (441)
T COG4098 238 YLTATPTKKL---ERKILK----------------------GNLRILKLP---------ARFH----------------- 266 (441)
T ss_pred EEecCChHHH---HHHhhh----------------------CCeeEeecc---------hhhc-----------------
Confidence 9999997542 111110 011111111 0000
Q ss_pred cccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccch
Q 037446 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKN 421 (1165)
Q Consensus 342 ~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~ 421 (1165)
..+. .+|.-. -.+.|.. .+
T Consensus 267 --------------------~~pL-pvPkf~--w~~~~~k----------------------~l---------------- 285 (441)
T COG4098 267 --------------------GKPL-PVPKFV--WIGNWNK----------------------KL---------------- 285 (441)
T ss_pred --------------------CCCC-CCCceE--EeccHHH----------------------Hh----------------
Confidence 0000 000000 0000000 00
Q ss_pred hhHHHHHHHHHhhhccCCCChHHH-HHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeeccccc
Q 037446 422 EDIRKVKLLMQQSISHGAQSPKLS-KMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSG 500 (1165)
Q Consensus 422 ~~~~~v~~~l~~~~~~~~~s~Kl~-~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g 500 (1165)
. ..|+. +|...|.++.. .+.+++||.++.+..+.++..|+..-+......+|+
T Consensus 286 --------------~----r~kl~~kl~~~lekq~~----~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs---- 339 (441)
T COG4098 286 --------------Q----RNKLPLKLKRWLEKQRK----TGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHS---- 339 (441)
T ss_pred --------------h----hccCCHHHHHHHHHHHh----cCCcEEEEecchHHHHHHHHHHHhhCCccceeeeec----
Confidence 0 01111 34555555443 689999999999999999999966543344455554
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEecc--CCCHHHHHHHHhhcCCCC---CCccceec
Q 037446 501 KASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA--NVSPLRMIQRMGRTGRKH---DGRIPHIF 575 (1165)
Q Consensus 501 ~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~--p~S~~~yiQriGRagR~G---qGkiv~v~ 575 (1165)
....|.+.+++|++|++.+||+|.+++||+.+|.|+++|.-.- -.+.+.++|..||+||.- .|.+.++.
T Consensus 340 ------~d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 340 ------EDQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred ------cCccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 3456899999999999999999999999999999998776333 378999999999999986 38888888
Q ss_pred ChhHHHHHHHHH
Q 037446 576 KPEVQFVELSIE 587 (1165)
Q Consensus 576 ~~d~~~~~~~Ie 587 (1165)
.+-...+...+.
T Consensus 414 ~G~skaM~~A~k 425 (441)
T COG4098 414 YGKSKAMKQARK 425 (441)
T ss_pred ccchHHHHHHHH
Confidence 877666664443
No 117
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.85 E-value=3.9e-20 Score=219.60 Aligned_cols=134 Identities=21% Similarity=0.232 Sum_probs=108.9
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhc---CCC--ccce-------eeecccccccCCCC
Q 037446 439 AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI---GDL--VKAT-------EFIGQSSGKASKGQ 506 (1165)
Q Consensus 439 ~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~---g~~--i~~~-------~l~G~~~g~~~ggm 506 (1165)
..++|+-.|+++|...-. -|.++|||+++....+.|..+|... |.. .... .+.|..-..+.|..
T Consensus 1123 ~~SgKmiLLleIL~mcee----IGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst 1198 (1567)
T KOG1015|consen 1123 EHSGKMILLLEILRMCEE----IGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGST 1198 (1567)
T ss_pred hcCcceehHHHHHHHHHH----hcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcc
Confidence 358899999999976433 5899999999999999999998653 211 1112 22233334567788
Q ss_pred CHHHHHHHHHHHhcCC----ceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCccceecC
Q 037446 507 SQKVQQAVLEKFRAGG----YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFK 576 (1165)
Q Consensus 507 s~~eR~~il~~Fr~g~----~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv~v~~ 576 (1165)
+..+|.++.++|++-. ..+||+|.+++.|||+-+++.||.||..|||...+|.+=|++|.||.+-+++|.
T Consensus 1199 ~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1199 TSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred cHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence 9999999999999542 348999999999999999999999999999999999999999999999888884
No 118
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=5.1e-20 Score=207.58 Aligned_cols=321 Identities=19% Similarity=0.225 Sum_probs=213.8
Q ss_pred CCChHHHHHHHHHhhc----CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCce
Q 037446 108 VPVRDYQFAITKTALF----SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEW 183 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~----rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~ 183 (1165)
-|+|+||...+..+.+ +.+||..|.|+|||++.+.++... .+++||||..---+.||...|..|..+....
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti-----kK~clvLcts~VSVeQWkqQfk~wsti~d~~ 375 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI-----KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQ 375 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee-----cccEEEEecCccCHHHHHHHHHhhcccCccc
Confidence 4799999999999988 679999999999999877665443 5789999999888999999999998887778
Q ss_pred EEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHc--------CccCCCCccEEEEcccccccCccchHHHHHHHHcCC
Q 037446 184 TIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS--------GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP 255 (1165)
Q Consensus 184 v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~--------~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~ 255 (1165)
++.++.+.+. ....++.|+|+||.++...-.+ ..+.-..|+++|+||+|.+-+. -|+.++..+...
T Consensus 376 i~rFTsd~Ke----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~-MFRRVlsiv~aH- 449 (776)
T KOG1123|consen 376 ICRFTSDAKE----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK-MFRRVLSIVQAH- 449 (776)
T ss_pred eEEeeccccc----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH-HHHHHHHHHHHH-
Confidence 8888877553 2335789999999998753321 1234567999999999999773 566555555432
Q ss_pred CCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHh
Q 037446 256 VQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335 (1165)
Q Consensus 256 ~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~ 335 (1165)
++ ||||||..+.++.+.+|- .| |..--+ ..-...|.
T Consensus 450 --cK-LGLTATLvREDdKI~DLN-FL-IGPKlY---------------------------------------EAnWmdL~ 485 (776)
T KOG1123|consen 450 --CK-LGLTATLVREDDKITDLN-FL-IGPKLY---------------------------------------EANWMDLQ 485 (776)
T ss_pred --hh-ccceeEEeeccccccccc-ee-ecchhh---------------------------------------hccHHHHH
Confidence 23 999999977665444431 10 111000 01111222
Q ss_pred hhccc-ccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccc
Q 037446 336 AIGLL-QNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSF 414 (1165)
Q Consensus 336 ~~~vl-~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~ 414 (1165)
+.|.+ ...-.+.|||..-...++ .+.+.....-+
T Consensus 486 ~kGhIA~VqCaEVWCpMt~eFy~e---------------------------------------------YL~~~t~kr~l 520 (776)
T KOG1123|consen 486 KKGHIAKVQCAEVWCPMTPEFYRE---------------------------------------------YLRENTRKRML 520 (776)
T ss_pred hCCceeEEeeeeeecCCCHHHHHH---------------------------------------------HHhhhhhhhhe
Confidence 22221 223445566643211111 11110000000
Q ss_pred hhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceee
Q 037446 415 ARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEF 494 (1165)
Q Consensus 415 ~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l 494 (1165)
.. .-...|+.+ +++|.++.. ..+.|+|||+...-.....+-.|.+ -.+
T Consensus 521 Ly---------------------vMNP~KFra-CqfLI~~HE---~RgDKiIVFsDnvfALk~YAikl~K-------pfI 568 (776)
T KOG1123|consen 521 LY---------------------VMNPNKFRA-CQFLIKFHE---RRGDKIIVFSDNVFALKEYAIKLGK-------PFI 568 (776)
T ss_pred ee---------------------ecCcchhHH-HHHHHHHHH---hcCCeEEEEeccHHHHHHHHHHcCC-------ceE
Confidence 00 011234433 444444433 2688999999877655554444322 123
Q ss_pred ecccccccCCCCCHHHHHHHHHHHh-cCCceEEEEcccccccccccCCCEEEEeccC-CCHHHHHHHHhhcCCCCC
Q 037446 495 IGQSSGKASKGQSQKVQQAVLEKFR-AGGYNVIVATSIGEEGLDIMEVDLVICFDAN-VSPLRMIQRMGRTGRKHD 568 (1165)
Q Consensus 495 ~G~~~g~~~ggms~~eR~~il~~Fr-~g~~~VLVATda~~eGLDIp~vd~VI~~D~p-~S~~~yiQriGRagR~Gq 568 (1165)
.| ..++.+|.+|++.|+ +..++.|+-..++...+|+|.++++|+.... .|-..-.||+||+.|..+
T Consensus 569 YG--------~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 569 YG--------PTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred EC--------CCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhh
Confidence 34 679999999999999 5568899999999999999999999998776 577888999999999864
No 119
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.82 E-value=1.8e-19 Score=186.94 Aligned_cols=157 Identities=24% Similarity=0.325 Sum_probs=131.0
Q ss_pred HHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCC
Q 037446 112 DYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQ 190 (1165)
Q Consensus 112 ~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~ 190 (1165)
++|.+++..+.. +++++.+|||+|||++++++++..+...+..++||++|+++|+.|..+.+.++++.....+..++|+
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGG 81 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTT
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccccccc
Confidence 679999998885 8899999999999999999999988776556999999999999999999999988767788888988
Q ss_pred CChH-H-HHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcC---CCCCeEEEEcc
Q 037446 191 ISPT-K-RASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV---PVQLRILALTA 265 (1165)
Q Consensus 191 ~~~~-~-~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~---~~~~riL~LSA 265 (1165)
.... . ...+..+++|+|+||++|...+..+...+.++++|||||+|.+... .+...+..+... ..+.++++|||
T Consensus 82 ~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~~~~~~~i~~~~~~~~~~~~i~~SA 160 (169)
T PF00270_consen 82 QSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TFRAMLKSILRRLKRFKNIQIILLSA 160 (169)
T ss_dssp SCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-THHHHHHHHHHHSHTTTTSEEEEEES
T ss_pred ccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc-cHHHHHHHHHHHhcCCCCCcEEEEee
Confidence 8754 2 2334457999999999999999876556777999999999999875 566666666542 33678999999
Q ss_pred CCCC
Q 037446 266 TPGS 269 (1165)
Q Consensus 266 TP~~ 269 (1165)
|+..
T Consensus 161 T~~~ 164 (169)
T PF00270_consen 161 TLPS 164 (169)
T ss_dssp SSTH
T ss_pred CCCh
Confidence 9973
No 120
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=3.2e-18 Score=211.47 Aligned_cols=129 Identities=17% Similarity=0.144 Sum_probs=113.2
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHH
Q 037446 439 AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518 (1165)
Q Consensus 439 ~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~F 518 (1165)
....|+.++++.+.+... .+.++||||++++.++.|+..|...| +++..+++ .+.+|++.+..|
T Consensus 579 t~~eK~~Ali~~I~~~~~----~grpVLIft~Sve~sE~Ls~~L~~~g--I~h~vLna----------kq~~REa~Iia~ 642 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQK----KGQPVLVGTASVEVSETLSRMLRAKR--IAHNVLNA----------KQHDREAEIVAE 642 (1025)
T ss_pred CHHHHHHHHHHHHHHHhh----CCCCEEEEeCcHHHHHHHHHHHHHcC--CCceeecC----------CHHHhHHHHHHh
Confidence 345799999999977544 68999999999999999999999999 88877775 688999999999
Q ss_pred hcCCceEEEEccccccccccc---CCC-----EEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHHH
Q 037446 519 RAGGYNVIVATSIGEEGLDIM---EVD-----LVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVE 583 (1165)
Q Consensus 519 r~g~~~VLVATda~~eGLDIp---~vd-----~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~~ 583 (1165)
+.+...|+|||++++||+||+ .|. +||+++.|.|...|.|++||+||.| +|...+++..+...+.
T Consensus 643 AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr 716 (1025)
T PRK12900 643 AGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMR 716 (1025)
T ss_pred cCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHH
Confidence 999999999999999999999 454 4499999999999999999999999 5998888887665543
No 121
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.80 E-value=1e-18 Score=211.63 Aligned_cols=343 Identities=20% Similarity=0.285 Sum_probs=214.1
Q ss_pred CChHHHHHHHHHh--hc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEE
Q 037446 109 PVRDYQFAITKTA--LF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTI 185 (1165)
Q Consensus 109 Qlr~yQ~eal~~l--l~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~ 185 (1165)
.++.||.+++..- ++ +|.|..+||+.|||+++-+.|+..+.. ..+.++++.|-.+.+..-...+..++-..+..+.
T Consensus 223 ~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~-~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve 301 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC-RRRNVLLILPYVSIVQEKISALSPFSIDLGFPVE 301 (1008)
T ss_pred HHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH-HhhceeEecceeehhHHHHhhhhhhccccCCcch
Confidence 6888998887533 23 799999999999999999998876543 2457999999988888777777766433344466
Q ss_pred EEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHc--CccCCCCccEEEEcccccccCccch----HHHHHHHH--cCCCC
Q 037446 186 DMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS--GTCLMKYLVCLVIDEAHRATGNYAY----CTAIRELM--SVPVQ 257 (1165)
Q Consensus 186 ~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~--~~~~l~~~~lVVIDEAHrl~~~~~~----~~~l~~L~--~~~~~ 257 (1165)
.+.|...+..+ .+...|.|+|.++-..++.. ..-.+..+++||+||.|.+.+. +. ...+.+++ .....
T Consensus 302 ~y~g~~~p~~~---~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~-~rg~~lE~~l~k~~y~~~~~~ 377 (1008)
T KOG0950|consen 302 EYAGRFPPEKR---RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDK-GRGAILELLLAKILYENLETS 377 (1008)
T ss_pred hhcccCCCCCc---ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecc-ccchHHHHHHHHHHHhccccc
Confidence 66676665433 25678999999988776654 3335667899999999999874 32 22333333 23344
Q ss_pred CeEEEEccCCCCChHHHHHHHHhh-ccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhh
Q 037446 258 LRILALTATPGSKQQTIQHIIDNL-YISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSA 336 (1165)
Q Consensus 258 ~riL~LSATP~~~~~~l~~Li~~L-~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~ 336 (1165)
.+++|||||.+|. ..++..++.. +... |+. -.+..|. ..+...
T Consensus 378 ~~iIGMSATi~N~-~lL~~~L~A~~y~t~--fRP---v~L~E~i----------k~G~~i-------------------- 421 (1008)
T KOG0950|consen 378 VQIIGMSATIPNN-SLLQDWLDAFVYTTR--FRP---VPLKEYI----------KPGSLI-------------------- 421 (1008)
T ss_pred eeEeeeecccCCh-HHHHHHhhhhheecc--cCc---ccchhcc----------CCCccc--------------------
Confidence 7799999999775 3344444311 0000 000 0000000 000000
Q ss_pred hcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchh
Q 037446 337 IGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFAR 416 (1165)
Q Consensus 337 ~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ 416 (1165)
.......+.
T Consensus 422 --------------------------------~~~~r~~~l--------------------------------------- 430 (1008)
T KOG0950|consen 422 --------------------------------YESSRNKVL--------------------------------------- 430 (1008)
T ss_pred --------------------------------ccchhhHHH---------------------------------------
Confidence 000000000
Q ss_pred cccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhc-----------
Q 037446 417 FMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI----------- 485 (1165)
Q Consensus 417 ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~----------- 485 (1165)
..+..+.... .+...+ +.++.++.+... ++.++||||++++.|+.++..+...
T Consensus 431 --------r~ia~l~~~~--~g~~dp--D~~v~L~tet~~----e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~ 494 (1008)
T KOG0950|consen 431 --------REIANLYSSN--LGDEDP--DHLVGLCTETAP----EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRL 494 (1008)
T ss_pred --------HHhhhhhhhh--cccCCC--cceeeehhhhhh----cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhh
Confidence 0000000000 000011 334444444443 5778999999999999877555321
Q ss_pred C-C--------------Cccce--eeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEe-
Q 037446 486 G-D--------------LVKAT--EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF- 547 (1165)
Q Consensus 486 g-~--------------~i~~~--~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~- 547 (1165)
+ | .+.++ .-.-.++..+|.|++.++|..+...|++|...|++||+.++-|+|+|+.+++|-+
T Consensus 495 ~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP 574 (1008)
T KOG0950|consen 495 GLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAP 574 (1008)
T ss_pred hHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCC
Confidence 0 0 00000 0001112367899999999999999999999999999999999999999988863
Q ss_pred ---ccCCCHHHHHHHHhhcCCCC---CCccceecChhH
Q 037446 548 ---DANVSPLRMIQRMGRTGRKH---DGRIPHIFKPEV 579 (1165)
Q Consensus 548 ---D~p~S~~~yiQriGRagR~G---qGkiv~v~~~d~ 579 (1165)
....+...|.|++|||||.| .|..++++...+
T Consensus 575 ~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 575 YVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSE 612 (1008)
T ss_pred ccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccc
Confidence 23467889999999999999 376667665533
No 122
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=99.78 E-value=3.9e-17 Score=204.45 Aligned_cols=372 Identities=15% Similarity=0.178 Sum_probs=258.7
Q ss_pred HhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCCCCCh---HH
Q 037446 197 ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQ---QT 273 (1165)
Q Consensus 197 ~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP~~~~---~~ 273 (1165)
..+|....|+++||+.|..++..+.+.+..+..|||||||++.+++.+..+++..+..++...+.||||.|.... ..
T Consensus 2 ~~ly~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~ 81 (814)
T TIGR00596 2 EKVYLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSP 81 (814)
T ss_pred hhHhhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHH
Confidence 457788999999999999999999999999999999999999998889989988888888889999999998755 78
Q ss_pred HHHHHHhhccccccccCCchhhhhhhhcc--CceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchh
Q 037446 274 IQHIIDNLYISTLEYRNESDQDVSSYVHN--RKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPV 351 (1165)
Q Consensus 274 l~~Li~~L~is~i~~~~~~~~~i~~y~~~--~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~ 351 (1165)
+..++++|++..+.+.+....++..|++. +.+..+.+++.+....+...+..++...+..|...+..- +...|...
T Consensus 82 l~~vmk~L~i~~v~l~prf~~~V~~~l~~~~~~V~ei~V~l~~~m~~Iq~~l~~~l~~~l~eLkr~n~~l--d~~dl~~e 159 (814)
T TIGR00596 82 LETKMRNLFLRHVYLWPRFHVEVASSLEKHKAEVIELHVSLTDSMSQIQSAILECLNKCIAELKRKNPEL--DMEDWNLE 159 (814)
T ss_pred HHHHHHHhCcCeEEEeCCCchHHHHHhccCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CHHHhHHh
Confidence 99999999999999999999999999987 678888999999999999999999999988887665311 11111111
Q ss_pred h--hhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhc-----------cchhcc
Q 037446 352 D--LLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQG-----------SFARFM 418 (1165)
Q Consensus 352 ~--l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~-----------~~~~ll 418 (1165)
. .......++.. ...+.+..........+.+..+-++..++..++...++..++..+... .|.-+-
T Consensus 160 n~l~~~F~~~i~~q-L~~~wh~~~~~tkqlv~Dl~~Lr~ll~~L~t~D~vtF~~yL~~~l~~~~~~~~sk~~~S~Wl~~d 238 (814)
T TIGR00596 160 NALTKSFDRIIRRQ-LDPNWHRLSYKTKQLVGDLKILRHLLQSLVTYDAVSFLGLLDTSLRANKPAVSRKYSESPWLLLD 238 (814)
T ss_pred hhhhhhHHHHHHHH-hhcccccccHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccccccccCCcchhhH
Confidence 1 00000111111 111233344455566677788888889999999999998888553311 121111
Q ss_pred cchhhHHHHHHHHHh-------hhc-cCCCChHHHHHHHHHHHhhcc-----cCCCCCeEEEEeCchHHHHHHHHHHHhc
Q 037446 419 SKNEDIRKVKLLMQQ-------SIS-HGAQSPKLSKMLEVLVDHFKT-----KDPKHSRVIIFSNFRGSVRDIMNALATI 485 (1165)
Q Consensus 419 ~~~~~~~~v~~~l~~-------~~~-~~~~s~Kl~~LlelL~~~~~~-----~~~~~~kvIVF~~sr~~ae~L~~~L~~~ 485 (1165)
....-+...+.-+-. ... .....||+..|.++|.+.... ......++||||+++.+|..|.++|...
T Consensus 239 aa~~lf~~ak~Rvy~~~~~~~~~~e~~lEe~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~~ 318 (814)
T TIGR00596 239 AAQLIFSYARQRVYYEGEGPNMKNEPVLEENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTTS 318 (814)
T ss_pred HHHHHHHHHHHHHhccccccccccccCcccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHhc
Confidence 111112222111110 011 123799999999999887652 1134678999999999999999999651
Q ss_pred CCCccceeee-----------ccccc--------------------------------ccCCCCCHHHHHHHHHHHhcCC
Q 037446 486 GDLVKATEFI-----------GQSSG--------------------------------KASKGQSQKVQQAVLEKFRAGG 522 (1165)
Q Consensus 486 g~~i~~~~l~-----------G~~~g--------------------------------~~~ggms~~eR~~il~~Fr~g~ 522 (1165)
+....+..+. |+... .-..|+++.. +++|+.|.
T Consensus 319 ~~~~~~~~fm~~~l~~y~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~krrr~rG~s~~~----~~~~r~~~ 394 (814)
T TIGR00596 319 NKKRGSRAFLLNKLRWYRKWREETSKLAKEVQSQDTFPENASSNVNKTFRKEQVPTKRRRVRGGSEVA----VEKLRNAN 394 (814)
T ss_pred cccccHHHHHHHHHHHHHhhhhhhhhhhHhhhhccccccccccccccccccccccccccccccchhHH----Hhhhcccc
Confidence 1000111111 11000 1112333222 56666554
Q ss_pred ce---------EE-----------------------EEcccccccccccC----------------------C-------
Q 037446 523 YN---------VI-----------------------VATSIGEEGLDIME----------------------V------- 541 (1165)
Q Consensus 523 ~~---------VL-----------------------VATda~~eGLDIp~----------------------v------- 541 (1165)
.. ++ |+|....+|+|++. +
T Consensus 395 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e 474 (814)
T TIGR00596 395 TNDMQHFEEDHELEEEGDDLEDGPAQEINAANDSKIFEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEE 474 (814)
T ss_pred cccccccchhhhhhhhhhhhccccccccccccccccccccccccccccchhhccccccceeeeecccccchhhHHHHHhh
Confidence 43 23 77889999999998 5
Q ss_pred ---CEEEEeccCCCHHHHHH--HHhhcCCCCCCccceecCh
Q 037446 542 ---DLVICFDANVSPLRMIQ--RMGRTGRKHDGRIPHIFKP 577 (1165)
Q Consensus 542 ---d~VI~~D~p~S~~~yiQ--riGRagR~GqGkiv~v~~~ 577 (1165)
++||+|++..+...-+| |.||.||. +++++++..
T Consensus 475 ~~P~~VImYEP~~sfIR~IEvyra~r~~r~--~rVyfL~y~ 513 (814)
T TIGR00596 475 LMPRYVIMYEPDISFIRQLEVYKASRPLRP--LRVYFLYYG 513 (814)
T ss_pred hCCCEEEEECCChHHHHHHHHHHccCCCCC--cEEEEEEEC
Confidence 89999999999999999 88888886 677777654
No 123
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.77 E-value=1.3e-17 Score=200.31 Aligned_cols=168 Identities=18% Similarity=0.221 Sum_probs=122.0
Q ss_pred CCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCC-ceEE
Q 037446 108 VPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQ-EWTI 185 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~-~~v~ 185 (1165)
+.+..||.+.+...-. ..++|.+||.+|||++....|-..++....+-+|+++|+++|+.|....+...+..+. ....
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 4578899999887765 6799999999999999888888888888888999999999999999998887764332 2233
Q ss_pred EEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHc---CccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEE
Q 037446 186 DMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS---GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILA 262 (1165)
Q Consensus 186 ~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~---~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~ 262 (1165)
.+.|....+-+.. .-+++|+|+-|+.+..++.. ......++++||+||+|.+.+...- .....+.. -.++.+|+
T Consensus 590 sl~g~ltqEYsin-p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~-l~~Eqll~-li~CP~L~ 666 (1330)
T KOG0949|consen 590 SLLGDLTQEYSIN-PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDG-LLWEQLLL-LIPCPFLV 666 (1330)
T ss_pred hhHhhhhHHhcCC-chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccc-hHHHHHHH-hcCCCeeE
Confidence 4445544332221 12689999999999998876 4455678999999999999874221 11222222 24556899
Q ss_pred EccCCCCChHHHHHHHH
Q 037446 263 LTATPGSKQQTIQHIID 279 (1165)
Q Consensus 263 LSATP~~~~~~l~~Li~ 279 (1165)
+|||.++... ++..++
T Consensus 667 LSATigN~~l-~qkWln 682 (1330)
T KOG0949|consen 667 LSATIGNPNL-FQKWLN 682 (1330)
T ss_pred EecccCCHHH-HHHHHH
Confidence 9999977543 444433
No 124
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.76 E-value=9.7e-17 Score=198.77 Aligned_cols=136 Identities=21% Similarity=0.360 Sum_probs=120.3
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHh
Q 037446 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519 (1165)
Q Consensus 440 ~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr 519 (1165)
...++..|++.|.++.. .+.++||||+++..++.|++.|...| +++..+|| ++++.+|.++++.|+
T Consensus 424 ~~~qi~~Ll~eI~~~~~----~g~~vLIf~~tk~~ae~L~~~L~~~g--i~~~~lh~--------~~~~~eR~~~l~~fr 489 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVA----RNERVLVTTLTKKMAEDLTDYLKELG--IKVRYLHS--------EIDTLERVEIIRDLR 489 (655)
T ss_pred ccchHHHHHHHHHHHHc----CCCEEEEEECCHHHHHHHHHHHhhhc--cceeeeeC--------CCCHHHHHHHHHHHh
Confidence 35677788888877654 68899999999999999999999988 77777776 789999999999999
Q ss_pred cCCceEEEEcccccccccccCCCEEEEec-----cCCCHHHHHHHHhhcCCCCCCccceecChhHHHHHHHHHHH
Q 037446 520 AGGYNVIVATSIGEEGLDIMEVDLVICFD-----ANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQY 589 (1165)
Q Consensus 520 ~g~~~VLVATda~~eGLDIp~vd~VI~~D-----~p~S~~~yiQriGRagR~GqGkiv~v~~~d~~~~~~~Ie~~ 589 (1165)
.|++.|||||+++++|+|+|++++||++| .|.+...|+||+|||||...|++++++......+...|++.
T Consensus 490 ~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 490 LGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred cCCceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHHHH
Confidence 99999999999999999999999999998 79999999999999999988999888887666666666654
No 125
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.75 E-value=7.6e-17 Score=198.04 Aligned_cols=169 Identities=20% Similarity=0.202 Sum_probs=132.5
Q ss_pred cCCHHHHHHHHHCCCCCCC-----------------CCCChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHH
Q 037446 88 SLCHVQIDAEAAKTWIYPV-----------------NVPVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 88 ~L~~~Ll~~L~~~g~~~Pt-----------------~IQlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil 145 (1165)
+.+...++.+...|+..-. ...+..-|..++..+.. ...++.+.||||||-+|+-.|.
T Consensus 160 ~~s~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~ 239 (730)
T COG1198 160 GVSLSVLKGLEKKGLIEIIELEPPLVVAPPDPSLSEWLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIA 239 (730)
T ss_pred chhHHHHHHHHhcCceeeecccCCCcccccccccccccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHH
Confidence 5666677777777776531 34677889999888865 4689999999999999999999
Q ss_pred HHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcC-----CccEEEEcHHHHHHHHHcC
Q 037446 146 NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK-----TKRVFFVTPQVLEKDIQSG 220 (1165)
Q Consensus 146 ~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~-----~~dIlVaTpq~L~~~l~~~ 220 (1165)
..+.. ++.+|||+|-++|..|..+.|+..||. .+.+++++.+..++...|. ..+|+|+|-..|
T Consensus 240 ~~L~~--GkqvLvLVPEI~Ltpq~~~rf~~rFg~---~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl------- 307 (730)
T COG1198 240 KVLAQ--GKQVLVLVPEIALTPQLLARFKARFGA---KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL------- 307 (730)
T ss_pred HHHHc--CCEEEEEeccccchHHHHHHHHHHhCC---ChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------
Confidence 98874 468999999999999999999999884 4778888888776655553 579999998777
Q ss_pred ccCCCCccEEEEccccccc--Cc---cchHHHHHHHHcCCCCCeEEEEccCCC
Q 037446 221 TCLMKYLVCLVIDEAHRAT--GN---YAYCTAIRELMSVPVQLRILALTATPG 268 (1165)
Q Consensus 221 ~~~l~~~~lVVIDEAHrl~--~~---~~~~~~l~~L~~~~~~~riL~LSATP~ 268 (1165)
..++.++++|||||-|.-. .. .-.+..+..++....+..+|+-||||.
T Consensus 308 F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 308 FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred cCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCC
Confidence 3578899999999999653 21 123445555565566778999999995
No 126
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.74 E-value=1.3e-16 Score=198.76 Aligned_cols=316 Identities=22% Similarity=0.235 Sum_probs=207.8
Q ss_pred CCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceE
Q 037446 106 VNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWT 184 (1165)
Q Consensus 106 t~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v 184 (1165)
.......+..+++..+.. +-+||.++||+|||-+.-..+++.. +...+++.+.-|+|--|...++.+...++......
T Consensus 47 ~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g-~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 47 SGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEG-LGIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred ccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhh-cccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 334555666778887776 5578889999999987655555542 24567899999999878888888877776542222
Q ss_pred EEE--eCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccc-hHHHHHHHHc-CCCCCeE
Q 037446 185 IDM--TGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYA-YCTAIRELMS-VPVQLRI 260 (1165)
Q Consensus 185 ~~l--~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~-~~~~l~~L~~-~~~~~ri 260 (1165)
+.+ -.+.. .....+|-|+|.++|++.+.... .+..+++|||||||.=.-+-. ....++.+.. .+...++
T Consensus 126 VGY~iRfe~~------~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 126 VGYSIRFESK------VSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred eeEEEEeecc------CCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 221 11111 12467899999999999988654 478899999999996432212 2223444443 4446899
Q ss_pred EEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhccc
Q 037446 261 LALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLL 340 (1165)
Q Consensus 261 L~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl 340 (1165)
|.||||... +.+...+++..+-.+.- ...++.+...+..
T Consensus 199 IimSATld~--~rfs~~f~~apvi~i~G---------------R~fPVei~Y~~~~------------------------ 237 (845)
T COG1643 199 IIMSATLDA--ERFSAYFGNAPVIEIEG---------------RTYPVEIRYLPEA------------------------ 237 (845)
T ss_pred EEEecccCH--HHHHHHcCCCCEEEecC---------------CccceEEEecCCC------------------------
Confidence 999999853 22333332211000000 0001111000000
Q ss_pred ccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccc
Q 037446 341 QNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK 420 (1165)
Q Consensus 341 ~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~ 420 (1165)
.
T Consensus 238 --------------------------------------------------------~----------------------- 238 (845)
T COG1643 238 --------------------------------------------------------E----------------------- 238 (845)
T ss_pred --------------------------------------------------------C-----------------------
Confidence 0
Q ss_pred hhhHHHHHHHHHhhhccCCCCh-HHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHh--cCCCccceeeecc
Q 037446 421 NEDIRKVKLLMQQSISHGAQSP-KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT--IGDLVKATEFIGQ 497 (1165)
Q Consensus 421 ~~~~~~v~~~l~~~~~~~~~s~-Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~--~g~~i~~~~l~G~ 497 (1165)
... =..++...+..+.. ...+.+|||.+-..+.+.+++.|.. .+..+.+..++|
T Consensus 239 -------------------~d~~l~~ai~~~v~~~~~---~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~- 295 (845)
T COG1643 239 -------------------ADYILLDAIVAAVDIHLR---EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYG- 295 (845)
T ss_pred -------------------cchhHHHHHHHHHHHhcc---CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccc-
Confidence 000 01122333333322 2467999999999999999999987 332345555555
Q ss_pred cccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEecc------------------CCCHHHHHHH
Q 037446 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA------------------NVSPLRMIQR 559 (1165)
Q Consensus 498 ~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~------------------p~S~~~yiQr 559 (1165)
.++.+++.++++---.|..+|++||++++.+|.||++.+||.-+. |-|-+...||
T Consensus 296 -------~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QR 368 (845)
T COG1643 296 -------ALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQR 368 (845)
T ss_pred -------cCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhh
Confidence 899999999888777777779999999999999999999996322 4688899999
Q ss_pred HhhcCCCCCCccceecChhH
Q 037446 560 MGRTGRKHDGRIPHIFKPEV 579 (1165)
Q Consensus 560 iGRagR~GqGkiv~v~~~d~ 579 (1165)
.|||||-+.|.++-+|..+.
T Consensus 369 aGRAGR~~pGicyRLyse~~ 388 (845)
T COG1643 369 AGRAGRTGPGICYRLYSEED 388 (845)
T ss_pred ccccccCCCceEEEecCHHH
Confidence 99999999999999998653
No 127
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.74 E-value=8.1e-16 Score=191.86 Aligned_cols=123 Identities=24% Similarity=0.386 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcC
Q 037446 442 PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG 521 (1165)
Q Consensus 442 ~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g 521 (1165)
.++..|++.|..+.. .+.++||||++++.++.|++.|...| +++..+|| ++++.+|..+++.|+.|
T Consensus 430 ~q~~~L~~~L~~~~~----~g~~viIf~~t~~~ae~L~~~L~~~g--i~~~~~h~--------~~~~~~R~~~l~~f~~g 495 (652)
T PRK05298 430 GQVDDLLSEIRKRVA----KGERVLVTTLTKRMAEDLTDYLKELG--IKVRYLHS--------DIDTLERVEIIRDLRLG 495 (652)
T ss_pred ccHHHHHHHHHHHHh----CCCEEEEEeCCHHHHHHHHHHHhhcc--eeEEEEEC--------CCCHHHHHHHHHHHHcC
Confidence 345566666766544 58899999999999999999999988 88877776 78999999999999999
Q ss_pred CceEEEEcccccccccccCCCEEEEecc-----CCCHHHHHHHHhhcCCCCCCccceecChh
Q 037446 522 GYNVIVATSIGEEGLDIMEVDLVICFDA-----NVSPLRMIQRMGRTGRKHDGRIPHIFKPE 578 (1165)
Q Consensus 522 ~~~VLVATda~~eGLDIp~vd~VI~~D~-----p~S~~~yiQriGRagR~GqGkiv~v~~~d 578 (1165)
++.|||||+++++|+|+|++++||++|. |.+...|+||+||+||...|++++++...
T Consensus 496 ~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~~ 557 (652)
T PRK05298 496 EFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKI 557 (652)
T ss_pred CceEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCCEEEEEecCC
Confidence 9999999999999999999999999885 78999999999999998789988888743
No 128
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.73 E-value=1.7e-16 Score=187.29 Aligned_cols=317 Identities=18% Similarity=0.266 Sum_probs=202.7
Q ss_pred CCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCC-CceE-
Q 037446 108 VPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIP-QEWT- 184 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~-~~~v- 184 (1165)
+..+.+-.+++..+.. +-+||.++||||||-+.--.+++. -+...+++.+.-|+|--|...++....-.|.. +..|
T Consensus 50 LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~ea-G~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 50 LPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEA-GFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred CCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhc-ccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceee
Confidence 3455667788888877 567888999999998633322222 22345569999999977777776665544432 1112
Q ss_pred --EEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccccccc-CccchHHHHHHHHcCCCCCeEE
Q 037446 185 --IDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT-GNYAYCTAIRELMSVPVQLRIL 261 (1165)
Q Consensus 185 --~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~-~~~~~~~~l~~L~~~~~~~riL 261 (1165)
+.+...++ ...+|.+.|-++|++.+.... .+.++++|||||||.=. ...-....++++...+...++|
T Consensus 129 Y~IRFed~ts--------~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklI 199 (674)
T KOG0922|consen 129 YTIRFEDSTS--------KDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLI 199 (674)
T ss_pred eEEEecccCC--------CceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEE
Confidence 12222111 356899999999999876543 56789999999999532 2123445677777777888999
Q ss_pred EEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccc
Q 037446 262 ALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341 (1165)
Q Consensus 262 ~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~ 341 (1165)
.||||... +.+ .+||....+ +.++...
T Consensus 200 imSATlda--~kf----------------------S~yF~~a~i--~~i~GR~--------------------------- 226 (674)
T KOG0922|consen 200 IMSATLDA--EKF----------------------SEYFNNAPI--LTIPGRT--------------------------- 226 (674)
T ss_pred EEeeeecH--HHH----------------------HHHhcCCce--EeecCCC---------------------------
Confidence 99999852 222 233333111 1111000
Q ss_pred cccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccch
Q 037446 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKN 421 (1165)
Q Consensus 342 ~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~ 421 (1165)
-|.++ .|...
T Consensus 227 -------fPVei-----~y~~~---------------------------------------------------------- 236 (674)
T KOG0922|consen 227 -------FPVEI-----LYLKE---------------------------------------------------------- 236 (674)
T ss_pred -------CceeE-----EeccC----------------------------------------------------------
Confidence 00000 00000
Q ss_pred hhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccc
Q 037446 422 EDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGK 501 (1165)
Q Consensus 422 ~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~ 501 (1165)
....-+.+.+..+.++.. ..+.+-+|||....++.+.+++.|.+.-.......- ...-.
T Consensus 237 -----------------p~~dYv~a~~~tv~~Ih~--~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~--~~~lp 295 (674)
T KOG0922|consen 237 -----------------PTADYVDAALITVIQIHL--TEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCP--ELILP 295 (674)
T ss_pred -----------------CchhhHHHHHHHHHHHHc--cCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCc--ceeee
Confidence 000001111111222221 235668999999999999999998765211110000 00113
Q ss_pred cCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEE--------ecc----------CCCHHHHHHHHhhc
Q 037446 502 ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC--------FDA----------NVSPLRMIQRMGRT 563 (1165)
Q Consensus 502 ~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~--------~D~----------p~S~~~yiQriGRa 563 (1165)
+++.++.+++.++++.--.|..+|++||++++..|-|+++.+||. |++ |-|-+.-.||.|||
T Consensus 296 ly~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRA 375 (674)
T KOG0922|consen 296 LYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRA 375 (674)
T ss_pred ecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccC
Confidence 456899999999988877889999999999999999999999995 333 56889999999999
Q ss_pred CCCCCCccceecChh
Q 037446 564 GRKHDGRIPHIFKPE 578 (1165)
Q Consensus 564 gR~GqGkiv~v~~~d 578 (1165)
||.|+|++.-+|..+
T Consensus 376 GRt~pGkcyRLYte~ 390 (674)
T KOG0922|consen 376 GRTGPGKCYRLYTES 390 (674)
T ss_pred CCCCCceEEEeeeHH
Confidence 999999999999755
No 129
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=2.3e-15 Score=186.05 Aligned_cols=427 Identities=14% Similarity=0.123 Sum_probs=228.2
Q ss_pred CChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEe
Q 037446 109 PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMT 188 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~ 188 (1165)
.+++-|.-+-- ++.++-|..+.||.|||+++.+|++.... .+..+.|++|+.-||.|-++.+..++...++.+..++
T Consensus 82 ~~ydVQliGg~-~Lh~G~iaEM~TGEGKTLvA~l~a~l~al--~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~ 158 (913)
T PRK13103 82 RHFDVQLIGGM-TLHEGKIAEMRTGEGKTLVGTLAVYLNAL--SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVT 158 (913)
T ss_pred CcchhHHHhhh-HhccCccccccCCCCChHHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEEC
Confidence 34444443322 33477889999999999999999875433 4567999999999999999999999888788899999
Q ss_pred CCCChHHHHhhcCCccEEEEcHHHHHHHHHcCcc-------CCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEE
Q 037446 189 GQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTC-------LMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRIL 261 (1165)
Q Consensus 189 G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~-------~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL 261 (1165)
++.+..+++... .++|+++|...|--++.+..+ ....+.++||||+|.++=+.. ..+ |
T Consensus 159 ~~~~~~err~~Y-~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEA-----------rtP---L 223 (913)
T PRK13103 159 PFQPPEEKRAAY-AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEA-----------RTP---L 223 (913)
T ss_pred CCCCHHHHHHHh-cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheecccc-----------CCc---e
Confidence 988877776554 389999999887322222222 247899999999999874311 112 4
Q ss_pred EEccCCCCChH---HHHHHHHhhccc------------ccccc---------CCchhhhhhhhccCceEEEEec-cchhH
Q 037446 262 ALTATPGSKQQ---TIQHIIDNLYIS------------TLEYR---------NESDQDVSSYVHNRKIELIEVE-MGQEA 316 (1165)
Q Consensus 262 ~LSATP~~~~~---~l~~Li~~L~is------------~i~~~---------~~~~~~i~~y~~~~~~~~i~v~-~~~~~ 316 (1165)
.+|+.+..... .+..++..|.-. .+.+. ......+..++....+....-. .....
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~ 303 (913)
T PRK13103 224 IISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHN 303 (913)
T ss_pred eecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhh
Confidence 45554432211 122222222100 00000 0000001111100000000000 00000
Q ss_pred HHHHHHHHHHHhhHHHHHhhhc-cccccc-------------ccCCch--hhhhhhhhhhhcCCCCCCCcccchhhHHHH
Q 037446 317 VEINNRIWEVIRPYTSRLSAIG-LLQNRD-------------YQTLSP--VDLLNSRDKFRQAPPPNLPQIKFGEVEAYF 380 (1165)
Q Consensus 317 ~~i~~~l~~~i~~~~~rl~~~~-vl~~~~-------------~~~l~p--~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~ 380 (1165)
......+...++.+........ ++.+.+ -..|+- .+...+++.+.-.+. -...+.....++|
T Consensus 304 ~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e--~~t~AsIT~QnfF 381 (913)
T PRK13103 304 LGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAE--SQTLASTTFQNYF 381 (913)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCC--ceeEEeehHHHHH
Confidence 0011111111111111111000 000000 000110 111112221111100 0001222223333
Q ss_pred HHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCC
Q 037446 381 GALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDP 460 (1165)
Q Consensus 381 ~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~ 460 (1165)
.. | . ...|++.........+.+-+...++.-++.....+...... .......|..++++.+.+...
T Consensus 382 r~----Y---~--kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~-vy~t~~eK~~Ai~~ei~~~~~---- 447 (913)
T PRK13103 382 RL----Y---N--KLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDL-VYLTAEEKYAAIITDIKECMA---- 447 (913)
T ss_pred Hh----c---c--hhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCe-EEcCHHHHHHHHHHHHHHHHh----
Confidence 22 2 1 12344433333223333322222222111111111111111 123446899999999988766
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcC-CceEEEEccccccccccc
Q 037446 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG-GYNVIVATSIGEEGLDIM 539 (1165)
Q Consensus 461 ~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g-~~~VLVATda~~eGLDIp 539 (1165)
.+.+|||-+.+.+..+.|+..|...| ++...|... ..++++-+-. +.| .-.|.|||.++|||.||.
T Consensus 448 ~GrPVLVGT~SVe~SE~ls~~L~~~g--i~h~VLNAk----------~~~~EA~IIa-~AG~~GaVTIATNMAGRGTDIk 514 (913)
T PRK13103 448 LGRPVLVGTATIETSEHMSNLLKKEG--IEHKVLNAK----------YHEKEAEIIA-QAGRPGALTIATNMAGRGTDIL 514 (913)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcC--CcHHHhccc----------cchhHHHHHH-cCCCCCcEEEeccCCCCCCCEe
Confidence 79999999999999999999999998 666555541 2233333333 345 456999999999999994
Q ss_pred -------------------------------------CCCEEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHH
Q 037446 540 -------------------------------------EVDLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQF 581 (1165)
Q Consensus 540 -------------------------------------~vd~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~ 581 (1165)
+==+||-...+.|.....|..||+||.| +|..-+++.-+...
T Consensus 515 Lg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~L 594 (913)
T PRK13103 515 LGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSL 594 (913)
T ss_pred cCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 1227899999999999999999999999 58877776655444
Q ss_pred H
Q 037446 582 V 582 (1165)
Q Consensus 582 ~ 582 (1165)
+
T Consensus 595 m 595 (913)
T PRK13103 595 M 595 (913)
T ss_pred H
Confidence 4
No 130
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.71 E-value=2.6e-16 Score=198.90 Aligned_cols=317 Identities=16% Similarity=0.202 Sum_probs=191.5
Q ss_pred CCCCCCCCCChHHHHHHHHHhhc----C-CeEEEcCCCchHHHHHHHHHHHHHHhC--CCCeEEEEecChhHHHHHHHHH
Q 037446 101 TWIYPVNVPVRDYQFAITKTALF----S-NTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKIVFAAPSRPLVMQQIEAC 173 (1165)
Q Consensus 101 g~~~Pt~IQlr~yQ~eal~~ll~----r-nvIl~a~TGsGKTL~a~lpil~~L~~~--~~~rvLILvPtr~La~Q~~~e~ 173 (1165)
++........+++|..++..+.. . .+++.+|||.|||.+++.+++..+... ...+++++.|+++++.+..+.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~ 266 (733)
T COG1203 187 KFKSFIEHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRA 266 (733)
T ss_pred ccccccCchhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHH
Confidence 33333444558889999988876 4 688999999999999999998877653 4679999999999999999999
Q ss_pred HHHhCCCCceEEEEeCCCChHHHHhh---------------cCCccEEEEcHHHHHHHHHc-CccC---CCCccEEEEcc
Q 037446 174 HNIVGIPQEWTIDMTGQISPTKRASF---------------WKTKRVFFVTPQVLEKDIQS-GTCL---MKYLVCLVIDE 234 (1165)
Q Consensus 174 ~kl~g~~~~~v~~l~G~~~~~~~~~l---------------~~~~dIlVaTpq~L~~~l~~-~~~~---l~~~~lVVIDE 234 (1165)
+++++........++|.......... +.-..+.++||-.+...... ..+. .--..++|+||
T Consensus 267 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE 346 (733)
T COG1203 267 KEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDE 346 (733)
T ss_pred HhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhcc
Confidence 99877653333223333322111000 00124444444444332111 1111 11245899999
Q ss_pred cccccCccchHHHHHHHHc--CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEecc
Q 037446 235 AHRATGNYAYCTAIRELMS--VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM 312 (1165)
Q Consensus 235 AHrl~~~~~~~~~l~~L~~--~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~ 312 (1165)
+|.+...- ....+-.+.. ......+|+||||++... ...+... +...........
T Consensus 347 ~h~~~~~~-~~~~l~~~i~~l~~~g~~ill~SATlP~~~---~~~l~~~------------------~~~~~~~~~~~~- 403 (733)
T COG1203 347 VHLYADET-MLAALLALLEALAEAGVPVLLMSATLPPFL---KEKLKKA------------------LGKGREVVENAK- 403 (733)
T ss_pred HHhhcccc-hHHHHHHHHHHHHhCCCCEEEEecCCCHHH---HHHHHHH------------------Hhcccceecccc-
Confidence 99997641 2222222222 123567999999987542 2222111 000000000000
Q ss_pred chhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 037446 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392 (1165)
Q Consensus 313 ~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~l 392 (1165)
.++.. +
T Consensus 404 -----------------------------------~~~~~-----~---------------------------------- 409 (733)
T COG1203 404 -----------------------------------FCPKE-----D---------------------------------- 409 (733)
T ss_pred -----------------------------------ccccc-----c----------------------------------
Confidence 00000 0
Q ss_pred HhhCCchHH-HHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCc
Q 037446 393 LSSHGIRPA-YEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNF 471 (1165)
Q Consensus 393 l~~~g~~~~-~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~s 471 (1165)
..+.... ...+.. .+. ..+...+.. ....+.+++|-|||
T Consensus 410 --e~~~~~~~~~~~~~---------------------------------~~~-~~~~~~~~~----~~~~~~kvlvI~NT 449 (733)
T COG1203 410 --EPGLKRKERVDVED---------------------------------GPQ-EELIELISE----EVKEGKKVLVIVNT 449 (733)
T ss_pred --ccccccccchhhhh---------------------------------hhh-Hhhhhcchh----hhccCCcEEEEEec
Confidence 0000000 000000 000 112222222 22368999999999
Q ss_pred hHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHh----cCCceEEEEcccccccccccCCCEEEEe
Q 037446 472 RGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR----AGGYNVIVATSIGEEGLDIMEVDLVICF 547 (1165)
Q Consensus 472 r~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr----~g~~~VLVATda~~eGLDIp~vd~VI~~ 547 (1165)
+..|..++..|+..++ ++..+|+ .++...|.+.+++++ .+...|+|||++.+.|||+ +.+++|.
T Consensus 450 V~~Aie~Y~~Lk~~~~--~v~LlHS--------Rf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mIT- 517 (733)
T COG1203 450 VDRAIELYEKLKEKGP--KVLLLHS--------RFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLIT- 517 (733)
T ss_pred HHHHHHHHHHHHhcCC--CEEEEec--------ccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeee-
Confidence 9999999999999884 6777776 678888888888654 4678899999999999999 4777764
Q ss_pred ccCCCHHHHHHHHhhcCCCC
Q 037446 548 DANVSPLRMIQRMGRTGRKH 567 (1165)
Q Consensus 548 D~p~S~~~yiQriGRagR~G 567 (1165)
-+..+..++||.||++|.|
T Consensus 518 -e~aPidSLIQR~GRv~R~g 536 (733)
T COG1203 518 -ELAPIDSLIQRAGRVNRHG 536 (733)
T ss_pred -cCCCHHHHHHHHHHHhhcc
Confidence 4566788999999999999
No 131
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.70 E-value=6.7e-16 Score=162.34 Aligned_cols=166 Identities=22% Similarity=0.304 Sum_probs=130.2
Q ss_pred CCChHHHHHHHHHhhc--CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCC-ceE
Q 037446 108 VPVRDYQFAITKTALF--SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQ-EWT 184 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~--rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~-~~v 184 (1165)
.+++++|.+++..+.. +++++.++||+|||.+++.+++..+...+..++||++|+..++.||...+...+.... ...
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVV 86 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEE
Confidence 4688999999999987 6899999999999999999999888766667899999999999999999999875443 333
Q ss_pred EEEeCCCChHHHHhhcCCc-cEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHc-CCCCCeEEE
Q 037446 185 IDMTGQISPTKRASFWKTK-RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILA 262 (1165)
Q Consensus 185 ~~l~G~~~~~~~~~l~~~~-dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~-~~~~~riL~ 262 (1165)
..+.+.........+.... +|+++|++.+.+.+.........+++|||||||++... .+...+..+.. .....++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~v~ 165 (201)
T smart00487 87 GLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKLLPKNVQLLL 165 (201)
T ss_pred EEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHHHHhCCccceEEE
Confidence 3444444344444444455 99999999999998877677788999999999999863 45455555554 446788999
Q ss_pred EccCCCCChHHH
Q 037446 263 LTATPGSKQQTI 274 (1165)
Q Consensus 263 LSATP~~~~~~l 274 (1165)
+||||.+.....
T Consensus 166 ~saT~~~~~~~~ 177 (201)
T smart00487 166 LSATPPEEIENL 177 (201)
T ss_pred EecCCchhHHHH
Confidence 999998654433
No 132
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=3.9e-15 Score=180.15 Aligned_cols=423 Identities=16% Similarity=0.138 Sum_probs=226.9
Q ss_pred CCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEE
Q 037446 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDM 187 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l 187 (1165)
+.+++-|.-+...++ .+-|+.+.||.|||+++.+|++.... .+..+.|++|+.-||.|-++.+..++...++.+..+
T Consensus 77 ~r~ydvQlig~l~Ll-~G~VaEM~TGEGKTLvA~l~a~l~AL--~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i 153 (764)
T PRK12326 77 LRPFDVQLLGALRLL-AGDVIEMATGEGKTLAGAIAAAGYAL--QGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWI 153 (764)
T ss_pred CCcchHHHHHHHHHh-CCCcccccCCCCHHHHHHHHHHHHHH--cCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 455666766666555 45678999999999999999876543 456799999999999999999988887777889999
Q ss_pred eCCCChHHHHhhcCCccEEEEcHHHHHHHHHc-------CccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeE
Q 037446 188 TGQISPTKRASFWKTKRVFFVTPQVLEKDIQS-------GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRI 260 (1165)
Q Consensus 188 ~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~-------~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~ri 260 (1165)
.++.+..+++... .++|+++|...|--++.+ .......+.++||||+|.++=+.. ..+
T Consensus 154 ~~~~~~~err~aY-~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeA-----------rtP--- 218 (764)
T PRK12326 154 TEESTPEERRAAY-ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEA-----------LVP--- 218 (764)
T ss_pred CCCCCHHHHHHHH-cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccc-----------cCc---
Confidence 9988877766554 689999999765433221 222346689999999998763210 011
Q ss_pred EEEccCCCCC--hHHHHHHHHhhccc-cccc---------cCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHh
Q 037446 261 LALTATPGSK--QQTIQHIIDNLYIS-TLEY---------RNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIR 328 (1165)
Q Consensus 261 L~LSATP~~~--~~~l~~Li~~L~is-~i~~---------~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~ 328 (1165)
|.+|+.+... ...+..+...|.-. .+.. .......+.+++... ... . ..........+...++
T Consensus 219 LiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~--~ly--~-~~~~~~~~~~i~~AL~ 293 (764)
T PRK12326 219 LVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGI--DLY--S-EEHVGTTLTQVNVALH 293 (764)
T ss_pred eeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCc--ccc--C-cchhHHHHHHHHHHHH
Confidence 2333322111 01111122211100 0000 000001111111100 000 0 0000111111222222
Q ss_pred hHHHHHhhhc---------cccc---c--cccCCch--hhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 037446 329 PYTSRLSAIG---------LLQN---R--DYQTLSP--VDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392 (1165)
Q Consensus 329 ~~~~rl~~~~---------vl~~---~--~~~~l~p--~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~l 392 (1165)
.......... +++. + +-..|+- .+...+++.+.-.+.. ...+......+|. .|.
T Consensus 294 A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~--~t~AsIT~QnfFr----~Y~---- 363 (764)
T PRK12326 294 AHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETG--EVLDTITVQALIG----RYP---- 363 (764)
T ss_pred HHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCc--eeeehhhHHHHHH----hcc----
Confidence 2111111110 0010 0 0011111 1122222222111100 0111122222222 221
Q ss_pred HhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCch
Q 037446 393 LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFR 472 (1165)
Q Consensus 393 l~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr 472 (1165)
...|+........+.+.+.+...++.-++.....+..... ........|+.++++.+.+... .+.++||.|.+.
T Consensus 364 -kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d-~iy~t~~~k~~Aii~ei~~~~~----~GrPVLVgt~sI 437 (764)
T PRK12326 364 -TVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEAD-RVYATAAEKNDAIVEHIAEVHE----TGQPVLVGTHDV 437 (764)
T ss_pred -hheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCC-ceEeCHHHHHHHHHHHHHHHHH----cCCCEEEEeCCH
Confidence 1234433322222222222222211111110001111111 1112346788999988877655 799999999999
Q ss_pred HHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCC-ceEEEEcccccccccccCC----------
Q 037446 473 GSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG-YNVIVATSIGEEGLDIMEV---------- 541 (1165)
Q Consensus 473 ~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~-~~VLVATda~~eGLDIp~v---------- 541 (1165)
+..+.|+..|.+.| ++...++.. ..++++-+-. +.|. -.|.|||++++||.||.--
T Consensus 438 ~~SE~ls~~L~~~g--I~h~vLNAk----------~~~~EA~IIa-~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V 504 (764)
T PRK12326 438 AESEELAERLRAAG--VPAVVLNAK----------NDAEEARIIA-EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRV 504 (764)
T ss_pred HHHHHHHHHHHhCC--CcceeeccC----------chHhHHHHHH-hcCCCCcEEEEecCCCCccCeecCCCcccchHHH
Confidence 99999999999998 877777652 2223332222 3343 4699999999999999622
Q ss_pred -----CEEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHH
Q 037446 542 -----DLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFV 582 (1165)
Q Consensus 542 -----d~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~ 582 (1165)
=+||....+.|.....|..||+||.| +|...+++.-+...+
T Consensus 505 ~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDdl~ 551 (764)
T PRK12326 505 AELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDVV 551 (764)
T ss_pred HHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchhHH
Confidence 28999999999999999999999999 588777776554433
No 133
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.69 E-value=1.5e-16 Score=166.78 Aligned_cols=152 Identities=28% Similarity=0.339 Sum_probs=104.9
Q ss_pred CCChHHHHHHHHHhhc--------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCC
Q 037446 108 VPVRDYQFAITKTALF--------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGI 179 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~--------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~ 179 (1165)
+.||+||.+++..+.. +++++.++||+|||++++..+..+.. ++||++|+..|+.||...+..+...
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 4689999999999983 67999999999999999987777643 8999999999999999999765432
Q ss_pred CCceEEE-----------EeC-CCChHHHHhhcCCccEEEEcHHHHHHHHHcC-----------ccCCCCccEEEEcccc
Q 037446 180 PQEWTID-----------MTG-QISPTKRASFWKTKRVFFVTPQVLEKDIQSG-----------TCLMKYLVCLVIDEAH 236 (1165)
Q Consensus 180 ~~~~v~~-----------l~G-~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~-----------~~~l~~~~lVVIDEAH 236 (1165)
....... ... ..............+++++|++.|....... ......+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 1111000 000 0011112233456899999999999876531 1234568999999999
Q ss_pred cccCccchHHHHHHHHcCCCCCeEEEEccCCCC
Q 037446 237 RATGNYAYCTAIRELMSVPVQLRILALTATPGS 269 (1165)
Q Consensus 237 rl~~~~~~~~~l~~L~~~~~~~riL~LSATP~~ 269 (1165)
++.+...+ +.+.. .....+|+|||||.+
T Consensus 157 ~~~~~~~~----~~i~~-~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 157 HYPSDSSY----REIIE-FKAAFILGLTATPFR 184 (184)
T ss_dssp CTHHHHHH----HHHHH-SSCCEEEEEESS-S-
T ss_pred hcCCHHHH----HHHHc-CCCCeEEEEEeCccC
Confidence 99875334 33333 556688999999963
No 134
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.68 E-value=5.8e-16 Score=190.22 Aligned_cols=135 Identities=16% Similarity=0.238 Sum_probs=108.0
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHh
Q 037446 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519 (1165)
Q Consensus 440 ~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr 519 (1165)
.+.|+.+++.+|... . .... .++|||++.+..+..+...|...+ +....+. |.|+...|...+..|.
T Consensus 520 ~s~ki~~~~~~l~~~-~-~s~~-~kiiifsq~~~~l~l~~~~l~~~~--~~~~~~~--------g~~~~~~r~~s~~~~~ 586 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAK-E-MSEQ-PKIVIFSQLIWGLALVCLRLFFKG--FVFLRYD--------GEMLMKIRTKSFTDFP 586 (674)
T ss_pred hhhhhHHHHHHHhhc-c-CCCC-CceeeehhHHHHHHHhhhhhhhcc--cccchhh--------hhhHHHHHHhhhcccc
Confidence 477888888888732 1 2223 499999999999999999888666 4444444 4789999999999999
Q ss_pred cCCc--eEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCccceecChhHHHHHHHHHHHH
Q 037446 520 AGGY--NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 520 ~g~~--~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
.+.. ..|++..+++.|+|+..+++|+..|++|||....|++.|++|.||.+.+.|..- .+++++++.+
T Consensus 587 ~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~---~i~dtveer~ 656 (674)
T KOG1001|consen 587 CDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRF---IIKDTVEERI 656 (674)
T ss_pred cCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeee---hhhhccHHHH
Confidence 5542 356899999999999999999999999999999999999999999998888743 3445555544
No 135
>COG4889 Predicted helicase [General function prediction only]
Probab=99.68 E-value=4.1e-16 Score=184.92 Aligned_cols=156 Identities=19% Similarity=0.147 Sum_probs=103.6
Q ss_pred CCChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCc
Q 037446 108 VPVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~ 182 (1165)
-.||+||+.++.++.. .++=+.+++|+|||++++-.+-.+ . ..++|+|||..+|..|..+++..-...+ .
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEal-a---~~~iL~LvPSIsLLsQTlrew~~~~~l~-~ 234 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEAL-A---AARILFLVPSISLLSQTLREWTAQKELD-F 234 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHH-h---hhheEeecchHHHHHHHHHHHhhccCcc-c
Confidence 4699999999999886 468888999999999987765444 2 3789999999999999988876532222 2
Q ss_pred eEEEEeCCCCh------------------------HHHH--hhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccc
Q 037446 183 WTIDMTGQISP------------------------TKRA--SFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAH 236 (1165)
Q Consensus 183 ~v~~l~G~~~~------------------------~~~~--~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAH 236 (1165)
....++++.+. ..+. .-..+--|+|+|||.+...-.....-+..|++||.||||
T Consensus 235 ~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH 314 (1518)
T COG4889 235 RASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH 314 (1518)
T ss_pred eeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh
Confidence 22333332210 0011 111235799999999988776666778899999999999
Q ss_pred cccCccchHHHHHHHHc-----CCCCCeEEEEccCCC
Q 037446 237 RATGNYAYCTAIRELMS-----VPVQLRILALTATPG 268 (1165)
Q Consensus 237 rl~~~~~~~~~l~~L~~-----~~~~~riL~LSATP~ 268 (1165)
|..+-+--...-..+.+ .-+..+.+-|||||.
T Consensus 315 RTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPk 351 (1518)
T COG4889 315 RTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPK 351 (1518)
T ss_pred ccccceecccCcccceeecCcchhHHHHhhhcccCch
Confidence 98652100000011111 112234589999994
No 136
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.67 E-value=1.8e-14 Score=185.65 Aligned_cols=100 Identities=15% Similarity=0.244 Sum_probs=72.9
Q ss_pred CCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCC
Q 037446 462 HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541 (1165)
Q Consensus 462 ~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~v 541 (1165)
++++|||+++.+..+.++..|...........+.. +.. ..|.+++++|+.++..||++|+.+.||||+|+.
T Consensus 674 ~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q--------~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~ 744 (850)
T TIGR01407 674 SPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQ--------GIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGN 744 (850)
T ss_pred CCCEEEEeCCHHHHHHHHHHHhhhccccCceEEec--------CCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCC
Confidence 56999999999999999999976321011112221 122 468899999999999999999999999999995
Q ss_pred C--EEEEeccCCC------------------------------HHHHHHHHhhcCCCCCCc
Q 037446 542 D--LVICFDANVS------------------------------PLRMIQRMGRTGRKHDGR 570 (1165)
Q Consensus 542 d--~VI~~D~p~S------------------------------~~~yiQriGRagR~GqGk 570 (1165)
. +||....|.- ...+.|.+||.-|..+.+
T Consensus 745 ~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~ 805 (850)
T TIGR01407 745 GLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDR 805 (850)
T ss_pred ceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCce
Confidence 5 6677666521 234568888888887544
No 137
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=4e-15 Score=173.48 Aligned_cols=315 Identities=19% Similarity=0.219 Sum_probs=199.3
Q ss_pred CCChHHHHHHHHHhhcC-CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCC----c
Q 037446 108 VPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQ----E 182 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~r-nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~----~ 182 (1165)
+..+.|..+++.++..+ -+||.++||||||.+.--.+.+.-....++++-+.-|+|--|..++..+.+-+|..- .
T Consensus 264 LPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVG 343 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVG 343 (902)
T ss_pred CCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccc
Confidence 45677888888888874 466779999999986333232221222334588889999888887777766555321 1
Q ss_pred eEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccc-cCccchHHHHHHHHcCCCCCeEE
Q 037446 183 WTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRA-TGNYAYCTAIRELMSVPVQLRIL 261 (1165)
Q Consensus 183 ~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl-~~~~~~~~~l~~L~~~~~~~riL 261 (1165)
-.+.+-..++ ...-+=++|.++|++.+.. ...+..+.+|||||||.= +...-.-..++.|.+..+..++|
T Consensus 344 YsIRFEdcTS--------ekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKll 414 (902)
T KOG0923|consen 344 YSIRFEDCTS--------EKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLL 414 (902)
T ss_pred eEEEeccccC--------cceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEE
Confidence 1111111111 2346678999999997764 346788999999999953 22223445677788888899999
Q ss_pred EEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccc
Q 037446 262 ALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341 (1165)
Q Consensus 262 ~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~ 341 (1165)
..|||.... .+...|+...+ ...-.++...-+.+...+++
T Consensus 415 IsSAT~DAe--kFS~fFDdapI-------------F~iPGRRyPVdi~Yt~~PEA------------------------- 454 (902)
T KOG0923|consen 415 ISSATMDAE--KFSAFFDDAPI-------------FRIPGRRYPVDIFYTKAPEA------------------------- 454 (902)
T ss_pred eeccccCHH--HHHHhccCCcE-------------EeccCcccceeeecccCCch-------------------------
Confidence 999998532 22222221110 00001111111111100000
Q ss_pred cccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccch
Q 037446 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKN 421 (1165)
Q Consensus 342 ~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~ 421 (1165)
T Consensus 455 -------------------------------------------------------------------------------- 454 (902)
T KOG0923|consen 455 -------------------------------------------------------------------------------- 454 (902)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHh----cCCCccceeeecc
Q 037446 422 EDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALAT----IGDLVKATEFIGQ 497 (1165)
Q Consensus 422 ~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~----~g~~i~~~~l~G~ 497 (1165)
.-+++.+..+.++.. ..+.+-+|||..-.+..+...+.|.. +|..++-..+.
T Consensus 455 --------------------dYldAai~tVlqIH~--tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~-- 510 (902)
T KOG0923|consen 455 --------------------DYLDAAIVTVLQIHL--TQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVL-- 510 (902)
T ss_pred --------------------hHHHHHHhhheeeEe--ccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEe--
Confidence 001111111112111 22457899999888877766655543 35333322222
Q ss_pred cccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEecc------------------CCCHHHHHHH
Q 037446 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA------------------NVSPLRMIQR 559 (1165)
Q Consensus 498 ~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~------------------p~S~~~yiQr 559 (1165)
.++.+++...+..|++.--.|..+|++||++++..|.|+++.+||.=+. |-|.+.-.||
T Consensus 511 ---PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QR 587 (902)
T KOG0923|consen 511 ---PIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQR 587 (902)
T ss_pred ---eccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhh
Confidence 4566899999999988888888999999999999999999999995222 5788899999
Q ss_pred HhhcCCCCCCccceecChh
Q 037446 560 MGRTGRKHDGRIPHIFKPE 578 (1165)
Q Consensus 560 iGRagR~GqGkiv~v~~~d 578 (1165)
.|||||-|+|++.-+|+..
T Consensus 588 aGRAGRtgPGKCfRLYt~~ 606 (902)
T KOG0923|consen 588 AGRAGRTGPGKCFRLYTAW 606 (902)
T ss_pred ccccCCCCCCceEEeechh
Confidence 9999999999999999754
No 138
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.64 E-value=1.7e-14 Score=179.08 Aligned_cols=353 Identities=18% Similarity=0.188 Sum_probs=217.0
Q ss_pred CCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHH-HhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCce
Q 037446 106 VNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFF-RWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEW 183 (1165)
Q Consensus 106 t~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L-~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~ 183 (1165)
.....+.++.++++.+.. +.++|.++||+|||.+.--.++... ..+...++++--|+|--|.-.++.+.+--+.....
T Consensus 170 ~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~ 249 (924)
T KOG0920|consen 170 ESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGE 249 (924)
T ss_pred HhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCC
Confidence 446677889999999888 5677889999999998766666554 33344578999999887877777775543322212
Q ss_pred EEEE-eCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCcc-chHHHHHHHHcCCCCCeEE
Q 037446 184 TIDM-TGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNY-AYCTAIRELMSVPVQLRIL 261 (1165)
Q Consensus 184 v~~l-~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~-~~~~~l~~L~~~~~~~riL 261 (1165)
.+.+ .+..+. ......++++|.+.|++.+.. .-.+..+..||+||+|.=.-+. ...-.++.++..++..++|
T Consensus 250 ~VGYqvrl~~~-----~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvI 323 (924)
T KOG0920|consen 250 EVGYQVRLESK-----RSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVI 323 (924)
T ss_pred eeeEEEeeecc-----cCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEE
Confidence 2211 111111 113478999999999998876 3456789999999999754432 3445667777778889999
Q ss_pred EEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccc
Q 037446 262 ALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341 (1165)
Q Consensus 262 ~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~ 341 (1165)
+||||.... . +..||....+..+.-..-+...-..+.+...+ .....+
T Consensus 324 LMSAT~dae--~----------------------fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~--------~~~~~~ 371 (924)
T KOG0920|consen 324 LMSATLDAE--L----------------------FSDYFGGCPVITIPGRTFPVKEYFLEDILSKT--------GYVSED 371 (924)
T ss_pred EeeeecchH--H----------------------HHHHhCCCceEeecCCCcchHHHHHHHHHHHh--------cccccc
Confidence 999998632 1 23344432222222111111111111111111 000000
Q ss_pred cccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccch
Q 037446 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKN 421 (1165)
Q Consensus 342 ~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~ 421 (1165)
...+ ..+..+ .+ .. ..
T Consensus 372 ~~~~----------------~~~~~~-------~~--~~----------------------------------~~----- 387 (924)
T KOG0920|consen 372 DSAR----------------SGPERS-------QL--RL----------------------------------AR----- 387 (924)
T ss_pred cccc----------------cccccC-------cc--cc----------------------------------cc-----
Confidence 0000 000000 00 00 00
Q ss_pred hhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccc
Q 037446 422 EDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGK 501 (1165)
Q Consensus 422 ~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~ 501 (1165)
+......-... |+..|..++- .....+.+|||.+....+..+.+.|......-.. .....-.
T Consensus 388 -------------~~~~~~~id~~-Li~~li~~I~-~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~---~~~~ilp 449 (924)
T KOG0920|consen 388 -------------LKLWEPEIDYD-LIEDLIEYID-EREFEGAILVFLPGWEEILQLKELLEVNLPFADS---LKFAILP 449 (924)
T ss_pred -------------chhccccccHH-HHHHHHHhcc-cCCCCceEEEEcCCHHHHHHHHHHhhhccccccc---cceEEEe
Confidence 00000001111 2222223332 2345789999999999999999999764321110 0001124
Q ss_pred cCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEE--------ecc----------CCCHHHHHHHHhhc
Q 037446 502 ASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC--------FDA----------NVSPLRMIQRMGRT 563 (1165)
Q Consensus 502 ~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~--------~D~----------p~S~~~yiQriGRa 563 (1165)
.|+.|+..+++.+...--.|..+||+||.+++..|-|++|-+||. ||+ |-|.+.-.||.|||
T Consensus 450 lHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRA 529 (924)
T KOG0920|consen 450 LHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRA 529 (924)
T ss_pred ccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccc
Confidence 567899999999999888999999999999999999999999996 444 34667789999999
Q ss_pred CCCCCCccceecChh
Q 037446 564 GRKHDGRIPHIFKPE 578 (1165)
Q Consensus 564 gR~GqGkiv~v~~~d 578 (1165)
||.-.|.++.+|...
T Consensus 530 GRv~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 530 GRVRPGICYHLYTRS 544 (924)
T ss_pred cCccCCeeEEeechh
Confidence 999999999888654
No 139
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.63 E-value=1.4e-13 Score=158.35 Aligned_cols=136 Identities=22% Similarity=0.375 Sum_probs=119.1
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhc
Q 037446 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA 520 (1165)
Q Consensus 441 s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~ 520 (1165)
...++.|+..+..... .+.|+||-+-|+++|+.|.++|...| +++..+|+ +...-+|.+++..++.
T Consensus 429 ~~QvdDL~~EI~~r~~----~~eRvLVTtLTKkmAEdLT~Yl~e~g--ikv~YlHS--------didTlER~eIirdLR~ 494 (663)
T COG0556 429 KGQVDDLLSEIRKRVA----KNERVLVTTLTKKMAEDLTEYLKELG--IKVRYLHS--------DIDTLERVEIIRDLRL 494 (663)
T ss_pred CCcHHHHHHHHHHHHh----cCCeEEEEeehHHHHHHHHHHHHhcC--ceEEeeec--------cchHHHHHHHHHHHhc
Confidence 5566777777766554 67999999999999999999999999 99888886 6788999999999999
Q ss_pred CCceEEEEcccccccccccCCCEEEEeccC-----CCHHHHHHHHhhcCCCCCCccceecChhHHHHHHHHHHHH
Q 037446 521 GGYNVIVATSIGEEGLDIMEVDLVICFDAN-----VSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 521 g~~~VLVATda~~eGLDIp~vd~VI~~D~p-----~S~~~yiQriGRagR~GqGkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
|.++|||..+.+-+|||+|.|..|..+|.. .|...++|-+|||+|--.|++++....-...+...|++.-
T Consensus 495 G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM~~Ai~ET~ 569 (663)
T COG0556 495 GEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIDETE 569 (663)
T ss_pred CCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEEchhhhHHHHHHHHHHH
Confidence 999999999999999999999999999886 7899999999999999999988887766666666666554
No 140
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.63 E-value=1.9e-14 Score=175.66 Aligned_cols=132 Identities=14% Similarity=0.158 Sum_probs=96.2
Q ss_pred CCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCC--
Q 037446 104 YPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIP-- 180 (1165)
Q Consensus 104 ~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~-- 180 (1165)
.-+...|+..|.-....+.. +..-+.||||.|||.-.++..+ ++ ...++++++|+||..|+.|..+.+.++....
T Consensus 77 k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl-~~-a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~ 154 (1187)
T COG1110 77 KATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSL-YL-AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGS 154 (1187)
T ss_pred HhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHH-HH-HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 34455788889888888776 7788999999999975433332 22 2345899999999999999999999976322
Q ss_pred -CceEEEEeCCCChHHHHh----hc-CCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccC
Q 037446 181 -QEWTIDMTGQISPTKRAS----FW-KTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 181 -~~~v~~l~G~~~~~~~~~----l~-~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
...++ ++|..+..+++. +. .+.+|+|+|.+-|...+.. +...+|++|++|.+|.++.
T Consensus 155 ~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lk 217 (1187)
T COG1110 155 LDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILK 217 (1187)
T ss_pred cceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHh
Confidence 22333 677766555432 22 3589999999999887663 2335799999999998764
No 141
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.63 E-value=6.7e-15 Score=145.66 Aligned_cols=143 Identities=27% Similarity=0.345 Sum_probs=110.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH-HhhcCC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR-ASFWKT 202 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~-~~l~~~ 202 (1165)
+++++.++||+|||.+++.++.........++++|++|++.|+.|+.+.+..+... ...+..+.+....... ......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGK 79 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCC
Confidence 47899999999999999999998877666789999999999999999999988753 3445566655544332 233467
Q ss_pred ccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCC
Q 037446 203 KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267 (1165)
Q Consensus 203 ~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP 267 (1165)
.+|+|+|++.+.............+++|||||+|.+.........+..........+++++||||
T Consensus 80 ~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 80 TDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 89999999999988876655667899999999999987533322223344455667899999998
No 142
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=3.8e-14 Score=173.62 Aligned_cols=128 Identities=20% Similarity=0.199 Sum_probs=102.0
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHH
Q 037446 439 AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518 (1165)
Q Consensus 439 ~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~F 518 (1165)
....|+.++++.+.+... .+.++||.|.+.+..+.|+..|.+.| ++...++. ...++++-+-.
T Consensus 407 t~~~K~~Aii~ei~~~~~----~gqPVLVgT~SIe~SE~ls~~L~~~g--i~h~vLNA----------k~~e~EA~IIa- 469 (925)
T PRK12903 407 TKHAKWKAVVKEVKRVHK----KGQPILIGTAQVEDSETLHELLLEAN--IPHTVLNA----------KQNAREAEIIA- 469 (925)
T ss_pred cHHHHHHHHHHHHHHHHh----cCCCEEEEeCcHHHHHHHHHHHHHCC--CCceeecc----------cchhhHHHHHH-
Confidence 346888999988877655 68999999999999999999999998 77766765 22344444433
Q ss_pred hcC-CceEEEEcccccccccccCCC--------EEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHHH
Q 037446 519 RAG-GYNVIVATSIGEEGLDIMEVD--------LVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVE 583 (1165)
Q Consensus 519 r~g-~~~VLVATda~~eGLDIp~vd--------~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~~ 583 (1165)
+.| ...|.|||.++|||.||.--. +||....+.|....-|..||+||.| +|...+++.-+...+.
T Consensus 470 ~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L~r 544 (925)
T PRK12903 470 KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFR 544 (925)
T ss_pred hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHHHH
Confidence 445 457999999999999996433 8999999999999999999999999 5887777766655443
No 143
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.59 E-value=6.5e-14 Score=164.47 Aligned_cols=483 Identities=17% Similarity=0.193 Sum_probs=253.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCC--------C-CceEEEEeCCCC-hH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGI--------P-QEWTIDMTGQIS-PT 194 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~--------~-~~~v~~l~G~~~-~~ 194 (1165)
.+|++..||+|||++.+..+--+++..+.+++|+|+|- .-.++|..+|..|+.. + ...+.++..+.+ ..
T Consensus 284 GCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPi-NTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~ 362 (1387)
T KOG1016|consen 284 GCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPI-NTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFD 362 (1387)
T ss_pred ceeeeeccccCceeEEeehhHHHhhcCccceEEEEEeh-HHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHH
Confidence 69999999999999988777777788888999999999 5567899999998632 1 122333333322 23
Q ss_pred HHHhh---cC-CccEEEEcHHHHHHHHHcC------------------------------------ccCCCCccEEEEcc
Q 037446 195 KRASF---WK-TKRVFFVTPQVLEKDIQSG------------------------------------TCLMKYLVCLVIDE 234 (1165)
Q Consensus 195 ~~~~l---~~-~~dIlVaTpq~L~~~l~~~------------------------------------~~~l~~~~lVVIDE 234 (1165)
.|..+ |. ...|+..-|+++.-+.... .+.-..-|+||+||
T Consensus 363 ~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDE 442 (1387)
T KOG1016|consen 363 QRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDE 442 (1387)
T ss_pred HHHHHHHHHhccCCEEEehHHHHHHHHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecC
Confidence 33222 32 3678999999876554320 01112257999999
Q ss_pred cccccCccchHHHHHHHHcCCCCCeEEEEccCC-CCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccc
Q 037446 235 AHRATGNYAYCTAIRELMSVPVQLRILALTATP-GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMG 313 (1165)
Q Consensus 235 AHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP-~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~ 313 (1165)
.|++++ ..+.+-..|..++..+| |.|||-| .++.-+.+.+++...+..+..+.+.. .-|.++...-..+...
T Consensus 443 GHrIKN--~~A~iS~aLk~IrtrRR-iVLTGYPLQNNLlEYwCMVDFVRP~yLGTR~eF~----nmFErPI~NGQCvDSt 515 (1387)
T KOG1016|consen 443 GHRIKN--ITAEISMALKAIRTRRR-IVLTGYPLQNNLLEYWCMVDFVRPKYLGTRKEFI----NMFERPIKNGQCVDST 515 (1387)
T ss_pred Cceecc--chHHHHHHHHHhhhcee-EEEeccccccchHHHhhhheeccccccchHHHHH----HHhhccccCCccccCC
Confidence 999998 55556566666655645 7788887 44433344444444433333332222 2222222222223333
Q ss_pred hhHHHHHH----HHHHHHhhHHHHHhhhcc----cccccccCCchhh--hhhhhhhhhc--------CCCCCCCcccc-h
Q 037446 314 QEAVEINN----RIWEVIRPYTSRLSAIGL----LQNRDYQTLSPVD--LLNSRDKFRQ--------APPPNLPQIKF-G 374 (1165)
Q Consensus 314 ~~~~~i~~----~l~~~i~~~~~rl~~~~v----l~~~~~~~l~p~~--l~~~~~~~~~--------~~~~~i~~~~~-~ 374 (1165)
++...+.. .|+.++..|..|.....+ ....+|..+.... ...+...|.. ..-+.+..... .
T Consensus 516 PdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~ 595 (1387)
T KOG1016|consen 516 PDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFS 595 (1387)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHHHHHHHHHHHHHHhhccccccccChHHHHH
Confidence 33322222 345566666666543321 1223333332211 0112222221 11011111000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccch---hcc-----------c---------------------
Q 037446 375 EVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFA---RFM-----------S--------------------- 419 (1165)
Q Consensus 375 ~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~---~ll-----------~--------------------- 419 (1165)
.....+..-..+|.+.+--.... ..-..+++..-.+... .+. +
T Consensus 596 vCcKIWNHPDVLY~~l~k~~~a~--e~dl~vee~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f 673 (1387)
T KOG1016|consen 596 VCCKIWNHPDVLYRLLEKKKRAE--EDDLRVEEMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKF 673 (1387)
T ss_pred HHHHhcCChHHHHHHHHHhhhhh--hhhhhHHHHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCc
Confidence 00011111122333222111000 0001111111100000 000 0
Q ss_pred --chhhHHH----HHHHHHhhhccC--CCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccc
Q 037446 420 --KNEDIRK----VKLLMQQSISHG--AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKA 491 (1165)
Q Consensus 420 --~~~~~~~----v~~~l~~~~~~~--~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~ 491 (1165)
..+.+.. ....+... ..+ ...+|+..+++++.+... -+.++|||++.....+.|.+.|.+.. +++
T Consensus 674 ~ee~~e~~~y~~w~~el~~nY-q~gvLen~pk~V~~~~~~des~~----~g~kil~fSq~l~~Ld~ieeil~krq--~pc 746 (1387)
T KOG1016|consen 674 DEEDEEVEKYSDWTFELFENY-QEGVLENGPKIVISLEILDESTQ----IGEKILIFSQNLTALDMIEEILKKRQ--IPC 746 (1387)
T ss_pred ccccccccchhhHHHHHHhhh-hcccccCCCceEEEEeeeccccc----cCceEEEeecchhHHHHHHHHHhccc--ccC
Confidence 0000000 00001110 111 112444444444443322 57899999999999999999997753 222
Q ss_pred eee-ecccc---------cccCCCCCHHHHHHHHHHHhcC---CceEEEEcccccccccccCCCEEEEeccCCCHHHHHH
Q 037446 492 TEF-IGQSS---------GKASKGQSQKVQQAVLEKFRAG---GYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQ 558 (1165)
Q Consensus 492 ~~l-~G~~~---------g~~~ggms~~eR~~il~~Fr~g---~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQ 558 (1165)
..= .|... ..+.|..+..+|++.+++|++. .+-+|++|.++..|||+-+++.+|.||.-|++..-.|
T Consensus 747 ~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaq 826 (1387)
T KOG1016|consen 747 KDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQ 826 (1387)
T ss_pred CCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccch
Confidence 110 11110 1344567889999999999853 2468999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCccceecChhHHHHHHHHHHHHhcCCccc---ccccccccHHHhhcCHHHHHHHHHHcCCCC
Q 037446 559 RMGRTGRKHDGRIPHIFKPEVQFVELSIEQYVSRGKKVK---DDHAITTPIFKEKLTAAETDLIAKYFHPTS 627 (1165)
Q Consensus 559 riGRagR~GqGkiv~v~~~d~~~~~~~Ie~~l~~~~~l~---~~~~~~~~~f~~~l~~~e~~~l~~~f~~~k 627 (1165)
++.|+.|.||.|-+++|.- .+...+|+.+-..+..+ .+......--...++..++.-|..|+...+
T Consensus 827 avcRvyrYGQ~KpcfvYRl---VmD~~lEkkIydRQIsKqGmsdRvVDd~np~an~s~Ke~enLl~~~ea~~ 895 (1387)
T KOG1016|consen 827 AVCRVYRYGQQKPCFVYRL---VMDNSLEKKIYDRQISKQGMSDRVVDDANPDANISQKELENLLMYDEAQD 895 (1387)
T ss_pred hhhhhhhhcCcCceeEEee---hhhhhhHHHHHHHHHhhccchhhhhcccCccccccHHHHHHHhhhhhccc
Confidence 9999999999887787743 22233333332211110 111111111122677788888888877443
No 144
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.58 E-value=1.1e-14 Score=144.02 Aligned_cols=116 Identities=35% Similarity=0.588 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcC
Q 037446 442 PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG 521 (1165)
Q Consensus 442 ~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g 521 (1165)
.|...+.+.+.++.. .+.++||||+++..++.+.+.|...+ ..+..++| +++..+|..+++.|+++
T Consensus 12 ~k~~~i~~~i~~~~~----~~~~~lvf~~~~~~~~~~~~~l~~~~--~~~~~~~~--------~~~~~~~~~~~~~f~~~ 77 (131)
T cd00079 12 EKLEALLELLKEHLK----KGGKVLIFCPSKKMLDELAELLRKPG--IKVAALHG--------DGSQEEREEVLKDFREG 77 (131)
T ss_pred HHHHHHHHHHHhccc----CCCcEEEEeCcHHHHHHHHHHHHhcC--CcEEEEEC--------CCCHHHHHHHHHHHHcC
Confidence 688888888876542 57899999999999999999998865 66666766 78899999999999999
Q ss_pred CceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-Ccc
Q 037446 522 GYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GRI 571 (1165)
Q Consensus 522 ~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gki 571 (1165)
...+||+|.++++|+|+|.+++||++++||+...|+|++||++|.|+ |.+
T Consensus 78 ~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~ 128 (131)
T cd00079 78 EIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTA 128 (131)
T ss_pred CCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceE
Confidence 99999999999999999999999999999999999999999999996 543
No 145
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.57 E-value=1.5e-14 Score=164.11 Aligned_cols=167 Identities=22% Similarity=0.177 Sum_probs=112.1
Q ss_pred HHHHHHHHhhc--------------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCC---eEEEEecChhHHHHHHHHHHH
Q 037446 113 YQFAITKTALF--------------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 113 yQ~eal~~ll~--------------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~---rvLILvPtr~La~Q~~~e~~k 175 (1165)
||.+++.++.. +++|+++++|+|||++++..+..+....+.. ++|||||. .+..||..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 68888888732 5699999999999999988877655444333 59999999 999999999999
Q ss_pred HhCCCCceEEEEeCCC-ChHHHHhhcCCccEEEEcHHHHH-----HHHHcCccCCCCccEEEEcccccccCccchHHHHH
Q 037446 176 IVGIPQEWTIDMTGQI-SPTKRASFWKTKRVFFVTPQVLE-----KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIR 249 (1165)
Q Consensus 176 l~g~~~~~v~~l~G~~-~~~~~~~l~~~~dIlVaTpq~L~-----~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~ 249 (1165)
++......+..+.|.. ............+|+|+|++.+. ... ..+...+|++||+||+|.+.+ ......+
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~--~~l~~~~~~~vIvDEaH~~k~--~~s~~~~ 155 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDK--EDLKQIKWDRVIVDEAHRLKN--KDSKRYK 155 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTT--HHHHTSEEEEEEETTGGGGTT--TTSHHHH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccccccc--cccccccceeEEEeccccccc--ccccccc
Confidence 9754345666666665 12222233456899999999999 211 122234599999999999976 3444556
Q ss_pred HHHcCCCCCeEEEEccCCCC-ChHHHHHHHHhhcccc
Q 037446 250 ELMSVPVQLRILALTATPGS-KQQTIQHIIDNLYIST 285 (1165)
Q Consensus 250 ~L~~~~~~~riL~LSATP~~-~~~~l~~Li~~L~is~ 285 (1165)
.+..+. ..++++|||||.. ...++..++..|....
T Consensus 156 ~l~~l~-~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~ 191 (299)
T PF00176_consen 156 ALRKLR-ARYRWLLSGTPIQNSLEDLYSLLRFLNPDP 191 (299)
T ss_dssp HHHCCC-ECEEEEE-SS-SSSGSHHHHHHHHHHCTTT
T ss_pred cccccc-cceEEeeccccccccccccccchheeeccc
Confidence 666655 5567999999954 4477888777765433
No 146
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.57 E-value=8.2e-14 Score=162.65 Aligned_cols=309 Identities=19% Similarity=0.230 Sum_probs=189.6
Q ss_pred ChHHHHHHHHHhhcCC-eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEE--
Q 037446 110 VRDYQFAITKTALFSN-TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID-- 186 (1165)
Q Consensus 110 lr~yQ~eal~~ll~rn-vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~-- 186 (1165)
....+.+++..+..++ +||.++||||||.+..-.+++- -...++-+-+.-|+|.-|...++.+..-++..-...+.
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~ed-GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYs 435 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYED-GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYS 435 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhc-ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceE
Confidence 3344556666666644 6677999999998754433332 11234567788899999988888887766543111111
Q ss_pred --EeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCc-cchHHHHHHHHcCCCCCeEEEE
Q 037446 187 --MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN-YAYCTAIRELMSVPVQLRILAL 263 (1165)
Q Consensus 187 --l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~-~~~~~~l~~L~~~~~~~riL~L 263 (1165)
+..-+. ....|-++|-+.|++..... -.+.++.+||+||||.-.-+ .-.-..++.+++.....++|..
T Consensus 436 IRFEdvT~--------~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVt 506 (1042)
T KOG0924|consen 436 IRFEDVTS--------EDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVT 506 (1042)
T ss_pred EEeeecCC--------CceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEe
Confidence 111111 34578899999998864432 25677999999999965332 2233456666666778899999
Q ss_pred ccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccc
Q 037446 264 TATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNR 343 (1165)
Q Consensus 264 SATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~ 343 (1165)
|||... +.+.+.|++...-.+.-+ .-++.+-...
T Consensus 507 SATm~a--~kf~nfFgn~p~f~IpGR---------------TyPV~~~~~k----------------------------- 540 (1042)
T KOG0924|consen 507 SATMDA--QKFSNFFGNCPQFTIPGR---------------TYPVEIMYTK----------------------------- 540 (1042)
T ss_pred eccccH--HHHHHHhCCCceeeecCC---------------ccceEEEecc-----------------------------
Confidence 999852 233333332211111000 0001100000
Q ss_pred cccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhh
Q 037446 344 DYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNED 423 (1165)
Q Consensus 344 ~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~ 423 (1165)
..+.. .++.
T Consensus 541 ------------------------------~p~eD-------------------------YVea---------------- 549 (1042)
T KOG0924|consen 541 ------------------------------TPVED-------------------------YVEA---------------- 549 (1042)
T ss_pred ------------------------------CchHH-------------------------HHHH----------------
Confidence 00000 0000
Q ss_pred HHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHH----HHHHHHHhcC--C--Cccceeee
Q 037446 424 IRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVR----DIMNALATIG--D--LVKATEFI 495 (1165)
Q Consensus 424 ~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae----~L~~~L~~~g--~--~i~~~~l~ 495 (1165)
++-+.+ .+. .....+-+|||..-.+.++ .+.+.|.+.. + .+.+..++
T Consensus 550 ----------------------avkq~v-~Ih--l~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiY 604 (1042)
T KOG0924|consen 550 ----------------------AVKQAV-QIH--LSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIY 604 (1042)
T ss_pred ----------------------HHhhhe-Eee--ccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeeh
Confidence 011111 111 1224567899998776554 4444444431 1 23444444
Q ss_pred cccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEecc------------------CCCHHHHH
Q 037446 496 GQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA------------------NVSPLRMI 557 (1165)
Q Consensus 496 G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~------------------p~S~~~yi 557 (1165)
+.+++.-+.++++.-..|..++||||.+++..|.||++.+||..+. |.|-+.-.
T Consensus 605 --------SQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~ 676 (1042)
T KOG0924|consen 605 --------SQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANAD 676 (1042)
T ss_pred --------hhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccch
Confidence 3678888888888888888999999999999999999999996332 67888899
Q ss_pred HHHhhcCCCCCCccceecChh
Q 037446 558 QRMGRTGRKHDGRIPHIFKPE 578 (1165)
Q Consensus 558 QriGRagR~GqGkiv~v~~~d 578 (1165)
||.|||||.|.|.++-+|+.+
T Consensus 677 QRaGRAGRt~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 677 QRAGRAGRTGPGTCYRLYTED 697 (1042)
T ss_pred hhccccCCCCCcceeeehhhh
Confidence 999999999999999999764
No 147
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.53 E-value=1.7e-14 Score=130.76 Aligned_cols=77 Identities=40% Similarity=0.597 Sum_probs=72.1
Q ss_pred HHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHH
Q 037446 481 ALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560 (1165)
Q Consensus 481 ~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQri 560 (1165)
.|+..+ +++..+|| ++++.+|..+++.|++++..|||||+++++|||+|.+++||++++|||+..|.|++
T Consensus 2 ~L~~~~--~~~~~i~~--------~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~ 71 (78)
T PF00271_consen 2 FLEKKG--IKVAIIHG--------DMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRI 71 (78)
T ss_dssp HHHHTT--SSEEEEST--------TSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHH
T ss_pred ChHHCC--CcEEEEEC--------CCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHh
Confidence 566777 77777776 78999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCC
Q 037446 561 GRTGRKH 567 (1165)
Q Consensus 561 GRagR~G 567 (1165)
||++|.|
T Consensus 72 GR~~R~g 78 (78)
T PF00271_consen 72 GRAGRIG 78 (78)
T ss_dssp TTSSTTT
T ss_pred hcCCCCC
Confidence 9999987
No 148
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.52 E-value=7.7e-13 Score=163.39 Aligned_cols=127 Identities=19% Similarity=0.106 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeC
Q 037446 110 VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTG 189 (1165)
Q Consensus 110 lr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G 189 (1165)
+++-|.-+.- ++.++-|+.+.||-|||+++.+|++-. .-.+..|-||+++..||.+-++.+..++...++.++.+.+
T Consensus 77 ~ydvQlig~l-~L~~G~IaEm~TGEGKTL~a~l~ayl~--aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~ 153 (870)
T CHL00122 77 HFDVQLIGGL-VLNDGKIAEMKTGEGKTLVATLPAYLN--ALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQE 153 (870)
T ss_pred CCchHhhhhH-hhcCCccccccCCCCchHHHHHHHHHH--HhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCC
Confidence 3444444432 334788999999999999999998532 2246779999999999998666666555444556888888
Q ss_pred CCChHHHHhhcCCccEEEEcHHHHHHHHHc-------CccCCCCccEEEEcccccccC
Q 037446 190 QISPTKRASFWKTKRVFFVTPQVLEKDIQS-------GTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 190 ~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~-------~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
+.+..+++.. ..++|+++|...|--++.+ .......+.++||||+|.++=
T Consensus 154 ~~~~~err~a-Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLI 210 (870)
T CHL00122 154 GMSSEERKKN-YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILI 210 (870)
T ss_pred CCChHHHHHh-cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhee
Confidence 8887766554 4579999999755432221 122346689999999998863
No 149
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=4.6e-13 Score=158.92 Aligned_cols=145 Identities=20% Similarity=0.251 Sum_probs=92.3
Q ss_pred HHHHHHHhhcCC-eEEEcCCCchHHHHHHHHHHHHHHhCC----CCeEEEEecChhHHHHHHHHHHHHhCCCCceE---E
Q 037446 114 QFAITKTALFSN-TLVALPTGLGKTLIAAVVIYNFFRWFP----DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWT---I 185 (1165)
Q Consensus 114 Q~eal~~ll~rn-vIl~a~TGsGKTL~a~lpil~~L~~~~----~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v---~ 185 (1165)
-+.+++++..+. +||++.||||||.+.--.+++.-.... .+-+-|.-|+|--+.-.++....-+|..+..| +
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqI 340 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQI 340 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEE
Confidence 345667666644 788999999999875444444321111 34677888998777776666654444322222 2
Q ss_pred EEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCc-cchHHHHHHHHc----C------
Q 037446 186 DMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN-YAYCTAIRELMS----V------ 254 (1165)
Q Consensus 186 ~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~-~~~~~~l~~L~~----~------ 254 (1165)
.+.|... ....|.|+|.+.|++.+.. .+.+..+..|||||||.-.-+ .-....+.++.. +
T Consensus 341 Rfd~ti~--------e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 341 RFDGTIG--------EDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred EeccccC--------CCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3344333 4678999999999998875 456788999999999964321 011111222211 2
Q ss_pred CCCCeEEEEccCC
Q 037446 255 PVQLRILALTATP 267 (1165)
Q Consensus 255 ~~~~riL~LSATP 267 (1165)
-++.++|.||||.
T Consensus 412 ~kpLKLIIMSATL 424 (1172)
T KOG0926|consen 412 IKPLKLIIMSATL 424 (1172)
T ss_pred cCceeEEEEeeeE
Confidence 2367899999997
No 150
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=1.7e-12 Score=159.97 Aligned_cols=128 Identities=17% Similarity=0.124 Sum_probs=89.7
Q ss_pred CChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEe
Q 037446 109 PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMT 188 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~ 188 (1165)
.+++-|.-+.- ++.++-|..+.||-||||++.+|++-... .++.|-||+++.-||..-++.+..++.+.++.++.+.
T Consensus 85 r~ydVQliGgl-~Lh~G~IAEM~TGEGKTL~atlpaylnAL--~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~ 161 (939)
T PRK12902 85 RHFDVQLIGGM-VLHEGQIAEMKTGEGKTLVATLPSYLNAL--TGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQ 161 (939)
T ss_pred CcchhHHHhhh-hhcCCceeeecCCCChhHHHHHHHHHHhh--cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEEC
Confidence 34444443332 33478899999999999999999865322 4567999999999998855555544444445677887
Q ss_pred CCCChHHHHhhcCCccEEEEcHHHH-----HHHHHc--CccCCCCccEEEEcccccccC
Q 037446 189 GQISPTKRASFWKTKRVFFVTPQVL-----EKDIQS--GTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 189 G~~~~~~~~~l~~~~dIlVaTpq~L-----~~~l~~--~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
++.....++.. ..++|+++|...| .+.+.. .......+.++||||+|.++=
T Consensus 162 ~~~~~~err~a-Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILI 219 (939)
T PRK12902 162 QDMSPEERKKN-YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILI 219 (939)
T ss_pred CCCChHHHHHh-cCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceee
Confidence 87777666543 5799999999877 333321 223456789999999998763
No 151
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.48 E-value=2.9e-12 Score=165.33 Aligned_cols=137 Identities=18% Similarity=0.204 Sum_probs=95.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHH-HHhhcCC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASFWKT 202 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~-~~~l~~~ 202 (1165)
++++|+..||||||++.+..+..++.....++++||+-++.|-.|..++|..+...... .. ...+..+ +..+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~-~~---~~~s~~~Lk~~l~~~ 349 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN-DP---KAESTSELKELLEDG 349 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhh-cc---cccCHHHHHHHHhcC
Confidence 36999999999999999998888877777789999999999999999999986432211 11 2233333 2333323
Q ss_pred -ccEEEEcHHHHHHHHHcC-ccCC-CCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCCC
Q 037446 203 -KRVFFVTPQVLEKDIQSG-TCLM-KYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPG 268 (1165)
Q Consensus 203 -~dIlVaTpq~L~~~l~~~-~~~l-~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP~ 268 (1165)
..|+|||.|.|....... .... .+--+||+|||||--.. ..+ +.+....++...+||||||.
T Consensus 350 ~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G-~~~---~~~~~~~~~a~~~gFTGTPi 414 (962)
T COG0610 350 KGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG-ELA---KLLKKALKKAIFIGFTGTPI 414 (962)
T ss_pred CCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc-HHH---HHHHHHhccceEEEeeCCcc
Confidence 489999999999877653 1112 23336778999998542 222 33333345578899999994
No 152
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.45 E-value=1.4e-11 Score=157.39 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=72.7
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccC
Q 037446 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIME 540 (1165)
Q Consensus 461 ~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~ 540 (1165)
.+++++|++.+.+..+.++..|.... +.. ...|. ++ .|.+++++|++++-.||++|..+.||||+|.
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~--~~~-l~Qg~-------~~---~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~ 712 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQ--VSH-LAQEK-------NG---TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQ 712 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcC--CcE-EEeCC-------Cc---cHHHHHHHHHcCCCeEEEecchhhCCCCCCC
Confidence 36799999999999999999986542 222 22231 11 2566899999988899999999999999974
Q ss_pred --CCEEEEeccCC----C--------------------------HHHHHHHHhhcCCCCCCc-cceecC
Q 037446 541 --VDLVICFDANV----S--------------------------PLRMIQRMGRTGRKHDGR-IPHIFK 576 (1165)
Q Consensus 541 --vd~VI~~D~p~----S--------------------------~~~yiQriGRagR~GqGk-iv~v~~ 576 (1165)
...||....|. + ...+.|.+||.-|....+ +++++.
T Consensus 713 ~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD 781 (820)
T PRK07246 713 ADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILD 781 (820)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 55666656551 1 234578888888887543 444443
No 153
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=1.1e-10 Score=145.42 Aligned_cols=128 Identities=16% Similarity=0.105 Sum_probs=100.5
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHH
Q 037446 439 AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518 (1165)
Q Consensus 439 ~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~F 518 (1165)
....|..++++.+.+... .+.++||-+.+.+..+.|+..|...| ++...|... ..++++-+-.-
T Consensus 609 t~~eK~~Aii~ei~~~~~----~GrPVLVGT~SVe~SE~lS~~L~~~g--I~H~VLNAK----------~h~~EAeIVA~ 672 (1112)
T PRK12901 609 TKREKYNAVIEEITELSE----AGRPVLVGTTSVEISELLSRMLKMRK--IPHNVLNAK----------LHQKEAEIVAE 672 (1112)
T ss_pred CHHHHHHHHHHHHHHHHH----CCCCEEEEeCcHHHHHHHHHHHHHcC--CcHHHhhcc----------chhhHHHHHHh
Confidence 446889999999988766 79999999999999999999999998 776666541 22344433333
Q ss_pred hcCCceEEEEccccccccccc--------CCCEEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHH
Q 037446 519 RAGGYNVIVATSIGEEGLDIM--------EVDLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFV 582 (1165)
Q Consensus 519 r~g~~~VLVATda~~eGLDIp--------~vd~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~ 582 (1165)
....-.|.|||.++|||.||. +==+||-...+.|.....|..||+||.| +|..-+++.-+...+
T Consensus 673 AG~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLm 745 (1112)
T PRK12901 673 AGQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLM 745 (1112)
T ss_pred cCCCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHH
Confidence 333456999999999999996 2248888999999999999999999999 588777776655444
No 154
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.36 E-value=2.4e-10 Score=140.41 Aligned_cols=54 Identities=26% Similarity=0.358 Sum_probs=47.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHh
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIV 177 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~ 177 (1165)
+.+++.++||+|||++|++|++.++....++++||++||++|+.|+.+.+..+.
T Consensus 17 ~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 17 RIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 568889999999999999999887765456899999999999999999887665
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.36 E-value=2.1e-12 Score=116.75 Aligned_cols=81 Identities=43% Similarity=0.719 Sum_probs=74.0
Q ss_pred HHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHH
Q 037446 477 DIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556 (1165)
Q Consensus 477 ~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~y 556 (1165)
.++..|+..+ +.+..+|| +++.++|..+++.|+++...+||+|+++++|+|+|.+++||.+++||+...|
T Consensus 2 ~l~~~l~~~~--~~~~~~~~--------~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~ 71 (82)
T smart00490 2 ELAELLKELG--IKVARLHG--------GLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASY 71 (82)
T ss_pred HHHHHHHHCC--CeEEEEEC--------CCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHH
Confidence 4567777766 77777776 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC
Q 037446 557 IQRMGRTGRKH 567 (1165)
Q Consensus 557 iQriGRagR~G 567 (1165)
.|++||++|.|
T Consensus 72 ~Q~~gR~~R~g 82 (82)
T smart00490 72 IQRIGRAGRAG 82 (82)
T ss_pred HHhhcccccCC
Confidence 99999999986
No 156
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.36 E-value=8.4e-12 Score=141.84 Aligned_cols=325 Identities=19% Similarity=0.272 Sum_probs=194.2
Q ss_pred CCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec
Q 037446 84 SFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161 (1165)
Q Consensus 84 sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP 161 (1165)
.|.. +.++.-.+-+... ..+..+.++.+.+..+.. +-+++.++||+|||.+.--.++.+..... +.+...-|
T Consensus 26 pf~~~p~s~rY~~ilk~R-----~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-~~v~CTQp 99 (699)
T KOG0925|consen 26 PFNGKPYSQRYYDILKKR-----RELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-TGVACTQP 99 (699)
T ss_pred CCCCCcCcHHHHHHHHHH-----hcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-cceeecCc
Confidence 4555 5666666655443 234566778888887776 45778899999999875444444443332 56788889
Q ss_pred ChhHHHHHHHHHHHHhCCC----CceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccccc
Q 037446 162 SRPLVMQQIEACHNIVGIP----QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHR 237 (1165)
Q Consensus 162 tr~La~Q~~~e~~kl~g~~----~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHr 237 (1165)
+|.-+.+.+.....-+... ....+.+-.-... +.=.-++|.++|++...... .+..+++||+||||.
T Consensus 100 rrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~--------~T~Lky~tDgmLlrEams~p-~l~~y~viiLDeahE 170 (699)
T KOG0925|consen 100 RRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSP--------NTLLKYCTDGMLLREAMSDP-LLGRYGVIILDEAHE 170 (699)
T ss_pred hHHHHHHHHHHHHHHhccccchhccccccccccCCh--------hHHHHHhcchHHHHHHhhCc-ccccccEEEechhhh
Confidence 9988888877765544321 0000111000000 11122577778777655433 467899999999995
Q ss_pred c-cCccchHHHHHHHHcCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhH
Q 037446 238 A-TGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316 (1165)
Q Consensus 238 l-~~~~~~~~~l~~L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~ 316 (1165)
- ++.......++.+....+..+++.||||... ..++ .|+.+.... .++..
T Consensus 171 RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a--~Kfq----------------------~yf~n~Pll--~vpg~--- 221 (699)
T KOG0925|consen 171 RTLATDILMGLLKEVVRNRPDLKLVVMSATLDA--EKFQ----------------------RYFGNAPLL--AVPGT--- 221 (699)
T ss_pred hhHHHHHHHHHHHHHHhhCCCceEEEeecccch--HHHH----------------------HHhCCCCee--ecCCC---
Confidence 3 3323455566777766678999999999842 2233 333322111 11000
Q ss_pred HHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhC
Q 037446 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSH 396 (1165)
Q Consensus 317 ~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~ 396 (1165)
.|.++ |
T Consensus 222 --------------------------------~PvEi------~------------------------------------ 227 (699)
T KOG0925|consen 222 --------------------------------HPVEI------F------------------------------------ 227 (699)
T ss_pred --------------------------------CceEE------E------------------------------------
Confidence 00000 0
Q ss_pred CchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHH
Q 037446 397 GIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVR 476 (1165)
Q Consensus 397 g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae 476 (1165)
+-.......+++.++.+.++.. .+..+-+|||....+..+
T Consensus 228 --------------------------------------Yt~e~erDylEaairtV~qih~--~ee~GDilvFLtgeeeIe 267 (699)
T KOG0925|consen 228 --------------------------------------YTPEPERDYLEAAIRTVLQIHM--CEEPGDILVFLTGEEEIE 267 (699)
T ss_pred --------------------------------------ecCCCChhHHHHHHHHHHHHHh--ccCCCCEEEEecCHHHHH
Confidence 0000011222333333333332 234678999999999988
Q ss_pred HHHHHHHhcC-------CCccceeeecccccccCCCCCHHHHHHHHHHHh---cC--CceEEEEcccccccccccCCCEE
Q 037446 477 DIMNALATIG-------DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR---AG--GYNVIVATSIGEEGLDIMEVDLV 544 (1165)
Q Consensus 477 ~L~~~L~~~g-------~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr---~g--~~~VLVATda~~eGLDIp~vd~V 544 (1165)
..++.+...+ ..+++..++ +.++..+++--- +| ..+|+|+|.+++..+-|+++.+|
T Consensus 268 ~aC~~i~re~~~L~~~~g~l~v~PLy------------P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~V 335 (699)
T KOG0925|consen 268 DACRKISREVDNLGPQVGPLKVVPLY------------PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFV 335 (699)
T ss_pred HHHHHHHHHHHhhccccCCceEEecC------------chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEE
Confidence 8888776432 123444443 233333333221 12 25799999999999999999999
Q ss_pred EEecc------------------CCCHHHHHHHHhhcCCCCCCccceecChh
Q 037446 545 ICFDA------------------NVSPLRMIQRMGRTGRKHDGRIPHIFKPE 578 (1165)
Q Consensus 545 I~~D~------------------p~S~~~yiQriGRagR~GqGkiv~v~~~d 578 (1165)
|.-+. |.|.+.-.||.|||||..+|++..+|+.+
T Consensus 336 IDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~ 387 (699)
T KOG0925|consen 336 IDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEE 387 (699)
T ss_pred ecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHH
Confidence 96332 67888999999999999999998888654
No 157
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.35 E-value=1.8e-10 Score=149.55 Aligned_cols=96 Identities=15% Similarity=0.185 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCce
Q 037446 445 SKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN 524 (1165)
Q Consensus 445 ~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~ 524 (1165)
..+.+.|.++.. ..++++|||+++.+..+.++..|......-.. .+..+ |++...|.+++++|+.++-.
T Consensus 738 ~~la~~i~~l~~---~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~-~ll~Q-------g~~~~~r~~l~~~F~~~~~~ 806 (928)
T PRK08074 738 EEVAAYIAKIAK---ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGY-VLLAQ-------GVSSGSRARLTKQFQQFDKA 806 (928)
T ss_pred HHHHHHHHHHHH---hCCCCEEEEECCHHHHHHHHHHHhhcccccCc-eEEec-------CCCCCCHHHHHHHHHhcCCe
Confidence 344555544432 13569999999999999999999765311111 11111 23334578999999998888
Q ss_pred EEEEcccccccccccC--CCEEEEeccCC
Q 037446 525 VIVATSIGEEGLDIME--VDLVICFDANV 551 (1165)
Q Consensus 525 VLVATda~~eGLDIp~--vd~VI~~D~p~ 551 (1165)
||++|..+.||||+|+ +.+||....|.
T Consensus 807 iLlG~~sFwEGVD~pg~~l~~viI~kLPF 835 (928)
T PRK08074 807 ILLGTSSFWEGIDIPGDELSCLVIVRLPF 835 (928)
T ss_pred EEEecCcccCccccCCCceEEEEEecCCC
Confidence 9999999999999998 58898877663
No 158
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.31 E-value=2e-11 Score=141.09 Aligned_cols=115 Identities=17% Similarity=0.335 Sum_probs=90.1
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhc--CCceEEEEcccccccccc
Q 037446 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA--GGYNVIVATSIGEEGLDI 538 (1165)
Q Consensus 461 ~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~--g~~~VLVATda~~eGLDI 538 (1165)
+|..++.|+ ++..-.+...+.+.|. .++..++| +++++.|.+--..|++ ++++||||||+.++|+|+
T Consensus 357 ~GDCvV~FS--kk~I~~~k~kIE~~g~-~k~aVIYG--------sLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL 425 (700)
T KOG0953|consen 357 PGDCVVAFS--KKDIFTVKKKIEKAGN-HKCAVIYG--------SLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL 425 (700)
T ss_pred CCCeEEEee--hhhHHHHHHHHHHhcC-cceEEEec--------CCCCchhHHHHHHhCCCCCccceEEeeccccccccc
Confidence 455555554 5666778888888773 44666666 8999999999999996 899999999999999999
Q ss_pred cCCCEEEEeccC---------CCHHHHHHHHhhcCCCC----CCccceecChhHHHHHHHHH
Q 037446 539 MEVDLVICFDAN---------VSPLRMIQRMGRTGRKH----DGRIPHIFKPEVQFVELSIE 587 (1165)
Q Consensus 539 p~vd~VI~~D~p---------~S~~~yiQriGRagR~G----qGkiv~v~~~d~~~~~~~Ie 587 (1165)
+++.||.++.. .+.....|-.|||||.| +|.+..+...|-..++..++
T Consensus 426 -~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 426 -NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSEDLKLLKRILK 486 (700)
T ss_pred -ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhhHHHHHHHHh
Confidence 78888887764 57788899999999998 36677777777665554443
No 159
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.28 E-value=3.6e-10 Score=140.49 Aligned_cols=131 Identities=13% Similarity=0.049 Sum_probs=98.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc----C-
Q 037446 127 LVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW----K- 201 (1165)
Q Consensus 127 Il~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~----~- 201 (1165)
|..+-+|||||-+|+-.+...+.. ++.+|||+|...|+.|+.+.|+..||. ..+..++++.+..++...| .
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~--Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~~~~~G 239 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA--GRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWLAVLRG 239 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc--CCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHHHHhCC
Confidence 344446999999999999888764 567999999999999999999998872 3477888888877654443 2
Q ss_pred CccEEEEcHHHHHHHHHcCccCCCCccEEEEccccccc--Ccc-c--hHHHHHHHHcCCCCCeEEEEccCCC
Q 037446 202 TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT--GNY-A--YCTAIRELMSVPVQLRILALTATPG 268 (1165)
Q Consensus 202 ~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~--~~~-~--~~~~l~~L~~~~~~~riL~LSATP~ 268 (1165)
..+|+|+|-..+ ..++.++++|||||-|.-. ... . .+..+..++....+..+|+.||||.
T Consensus 240 ~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 240 QARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred CCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 379999998766 3578899999999999643 211 1 2233444454556778999999996
No 160
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=99.21 E-value=2.1e-12 Score=157.10 Aligned_cols=361 Identities=18% Similarity=0.223 Sum_probs=196.7
Q ss_pred CChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeEEEEecChhHHHHHHHHHHHHhCCCCc
Q 037446 109 PVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~ 182 (1165)
.+.+||.++++++.. .++|+++++|.|||.+.+.....+.... ..+..|+++|. +-+..|.+++..|+- ..
T Consensus 295 ~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~-sT~~nwe~e~~~wap--~~ 371 (696)
T KOG0383|consen 295 TLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPL-STIVNWEREFELWAP--SF 371 (696)
T ss_pred cccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccC-ccccCCCCchhccCC--Cc
Confidence 355899999999986 5899999999999998776666555433 33578999999 666678888877643 22
Q ss_pred eEEEEeCCCChHH----------------------H-HhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 183 WTIDMTGQISPTK----------------------R-ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 183 ~v~~l~G~~~~~~----------------------~-~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
.++.+.|...... + ..-....++.+.+|++...... .+..-.|.++|+||+|++.
T Consensus 372 ~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~--il~~v~w~~livde~~rlk 449 (696)
T KOG0383|consen 372 YVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQS--ILFSVQWGLLIVDEAHRLK 449 (696)
T ss_pred ccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHH--HHhhhhcceeEeechhhcc
Confidence 3333334332110 0 0001135777777777654332 2334468999999999999
Q ss_pred CccchHHHHHHHHcCCCCCeEEEEccCCC-CChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHH
Q 037446 240 GNYAYCTAIRELMSVPVQLRILALTATPG-SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVE 318 (1165)
Q Consensus 240 ~~~~~~~~l~~L~~~~~~~riL~LSATP~-~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~ 318 (1165)
+. -....+.+-.+....+ +++|+||- ++.+.+..+++.|....+.- ..|+... . -+....+
T Consensus 450 n~--~s~~f~~l~~~~~~~~-~lltgtPlqnn~~el~~ll~flt~~~~~~--------~~~f~e~---~----~d~~~~~ 511 (696)
T KOG0383|consen 450 NK--QSKRFRVLTAYPIDSK-LLLTGTPLQNNLEELFNLLNFLTPGRFNS--------LEWFLEE---F----HDISCEE 511 (696)
T ss_pred cc--hhhhhhhccccccchh-hhccCCcchhhhHHhhhcccccCcccccc--------hhhhhhh---c----chhhHHH
Confidence 84 3333344444444444 89999994 44444555444332211110 0111110 0 0011222
Q ss_pred HHHHHHHHHhhHHHHHhhhcccccc--cccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhC
Q 037446 319 INNRIWEVIRPYTSRLSAIGLLQNR--DYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSH 396 (1165)
Q Consensus 319 i~~~l~~~i~~~~~rl~~~~vl~~~--~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~ 396 (1165)
-.+.++..+.+...|..+.+++.+. +-..+.+..+....+++.+.. +..-|.+.. .
T Consensus 512 ~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~------------------~t~n~~~l~---~- 569 (696)
T KOG0383|consen 512 QIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKI------------------LTRNWQGLL---A- 569 (696)
T ss_pred HHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHH------------------HcCChHHHh---h-
Confidence 3344445555555555555544431 111111122222222222111 000000000 0
Q ss_pred CchHHH--HHHHHHHhhccchhcccchh----hHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeC
Q 037446 397 GIRPAY--EMLEEKLKQGSFARFMSKNE----DIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSN 470 (1165)
Q Consensus 397 g~~~~~--~~L~~~~~~~~~~~ll~~~~----~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~ 470 (1165)
|..+.. ..+.+.-+......+....+ ........+. ..+.|+..|..++.+... .++||+||.+
T Consensus 570 ~~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~------k~~~k~~~l~~~~~~l~~----~ghrvl~~~q 639 (696)
T KOG0383|consen 570 GVHQYSLLNIVMELRKQCNHPYLSPLEEPLEENGEYLGSALI------KASGKLTLLLKMLKKLKS----SGHRVLIFSQ 639 (696)
T ss_pred cchhHHHHHHHHHHHHhhcCcccCccccccccchHHHHHHHH------HHHHHHHHHHHHHHHHHh----cchhhHHHHH
Confidence 222111 11111111111111111110 1111111111 236788888888877655 7999999999
Q ss_pred chHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHh---cCCceEEEEccccccc
Q 037446 471 FRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR---AGGYNVIVATSIGEEG 535 (1165)
Q Consensus 471 sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr---~g~~~VLVATda~~eG 535 (1165)
.....+.|...+...+ ....+.| +.+..+|++++++|+ ...+.+|++|.+++.|
T Consensus 640 ~~~~ldlled~~~~~~---~~~r~dG--------~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 640 MIHMLDLLEDYLTYEG---KYERIDG--------PITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHhHHHHhccC---cceeccC--------CccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 9999999999998765 4445555 567778999999999 3457899999999877
No 161
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.18 E-value=2.9e-09 Score=133.74 Aligned_cols=168 Identities=18% Similarity=0.128 Sum_probs=107.6
Q ss_pred CCCCCCCCCChHHHHHHHHHhhc-------CC--eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHH
Q 037446 101 TWIYPVNVPVRDYQFAITKTALF-------SN--TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIE 171 (1165)
Q Consensus 101 g~~~Pt~IQlr~yQ~eal~~ll~-------rn--vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~ 171 (1165)
+|..++.-....||-.+...+.. .. +|-.|.||+|||++=+-.|+.+-...++-|+.|-.-.|.|..|.-.
T Consensus 400 ~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGd 479 (1110)
T TIGR02562 400 YFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGH 479 (1110)
T ss_pred hhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchH
Confidence 45455555667799888888775 22 4556999999999988777766444444588888888999999999
Q ss_pred HHHHHhCCCCceEEEEeCCCChHH----------------------H---Hh-------------------hc-------
Q 037446 172 ACHNIVGIPQEWTIDMTGQISPTK----------------------R---AS-------------------FW------- 200 (1165)
Q Consensus 172 e~~kl~g~~~~~v~~l~G~~~~~~----------------------~---~~-------------------l~------- 200 (1165)
++++-++.......++.|+....+ . .. +.
T Consensus 480 a~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~r 559 (1110)
T TIGR02562 480 ALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKT 559 (1110)
T ss_pred HHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhh
Confidence 888877766555555555421000 0 00 00
Q ss_pred -CCccEEEEcHHHHHHHHHc---CccCCC----CccEEEEcccccccCccchHHHHHHHHc--CCCCCeEEEEccCCCCC
Q 037446 201 -KTKRVFFVTPQVLEKDIQS---GTCLMK----YLVCLVIDEAHRATGNYAYCTAIRELMS--VPVQLRILALTATPGSK 270 (1165)
Q Consensus 201 -~~~dIlVaTpq~L~~~l~~---~~~~l~----~~~lVVIDEAHrl~~~~~~~~~l~~L~~--~~~~~riL~LSATP~~~ 270 (1165)
-.+.|+|+|++.++..... +...+. --+.|||||+|-+-.. .+ ..+..++. .....++++||||.+..
T Consensus 560 ll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~-~~L~rlL~w~~~lG~~VlLmSATLP~~ 637 (1110)
T TIGR02562 560 LLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DL-PALLRLVQLAGLLGSRVLLSSATLPPA 637 (1110)
T ss_pred hhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HH-HHHHHHHHHHHHcCCCEEEEeCCCCHH
Confidence 0268999999999876531 111111 1247999999988541 22 22333332 22345789999998654
No 162
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.12 E-value=2.8e-09 Score=134.87 Aligned_cols=113 Identities=21% Similarity=0.270 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCC
Q 037446 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG 522 (1165)
Q Consensus 443 Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~ 522 (1165)
=...+...|.+... ..+.++|||+++-+..+.+.+.+...... ..+... ....+..++++|+.+.
T Consensus 463 ~~~~~~~~i~~~~~---~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~-~~v~~q-----------~~~~~~~~l~~f~~~~ 527 (654)
T COG1199 463 LLAKLAAYLREILK---ASPGGVLVLFPSYEYLKRVAERLKDERST-LPVLTQ-----------GEDEREELLEKFKASG 527 (654)
T ss_pred HHHHHHHHHHHHHh---hcCCCEEEEeccHHHHHHHHHHHhhcCcc-ceeeec-----------CCCcHHHHHHHHHHhc
Confidence 34455555555543 23459999999999999999999876521 122222 3334558999998665
Q ss_pred c-eEEEEcccccccccccC--CCEEEEeccCC------------------------------CHHHHHHHHhhcCCCCCC
Q 037446 523 Y-NVIVATSIGEEGLDIME--VDLVICFDANV------------------------------SPLRMIQRMGRTGRKHDG 569 (1165)
Q Consensus 523 ~-~VLVATda~~eGLDIp~--vd~VI~~D~p~------------------------------S~~~yiQriGRagR~GqG 569 (1165)
- .++|+|..+.||||+|+ +.+||....|. -...+.|.+||+-|.-..
T Consensus 528 ~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D 607 (654)
T COG1199 528 EGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDD 607 (654)
T ss_pred CCeEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCC
Confidence 4 89999999999999998 68889877773 345668999999997754
Q ss_pred c
Q 037446 570 R 570 (1165)
Q Consensus 570 k 570 (1165)
+
T Consensus 608 ~ 608 (654)
T COG1199 608 R 608 (654)
T ss_pred c
Confidence 3
No 163
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.10 E-value=9.4e-10 Score=136.62 Aligned_cols=148 Identities=22% Similarity=0.325 Sum_probs=103.9
Q ss_pred HHHHHHHHHhhc--CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCC-CCceEEEEe
Q 037446 112 DYQFAITKTALF--SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGI-PQEWTIDMT 188 (1165)
Q Consensus 112 ~yQ~eal~~ll~--rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~-~~~~v~~l~ 188 (1165)
+.|...+..+.+ .+++|++|+|||||.++-++++. ....+++++|+|..+++..+++.+.+-++. .+..++.++
T Consensus 1146 ~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1146 PIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred CceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 334445555554 67999999999999999888765 445679999999998888777666555432 334566677
Q ss_pred CCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccc-----hHHHHHHHH-cCCCCCeEEE
Q 037446 189 GQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYA-----YCTAIRELM-SVPVQLRILA 262 (1165)
Q Consensus 189 G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~-----~~~~l~~L~-~~~~~~riL~ 262 (1165)
|......+ +....+|+|+||+.+..+ + ..+.+++.|.||+|.+.+-++ .+. ++.+. .+-+..|+++
T Consensus 1223 ge~s~~lk--l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ 1294 (1674)
T KOG0951|consen 1223 GETSLDLK--LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVA 1294 (1674)
T ss_pred CccccchH--HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEE
Confidence 77665433 335679999999998765 2 567789999999999986322 111 33332 2345678899
Q ss_pred EccCCCCC
Q 037446 263 LTATPGSK 270 (1165)
Q Consensus 263 LSATP~~~ 270 (1165)
+|....+.
T Consensus 1295 ls~~lana 1302 (1674)
T KOG0951|consen 1295 LSSSLANA 1302 (1674)
T ss_pred eehhhccc
Confidence 98887654
No 164
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.07 E-value=5.8e-09 Score=131.78 Aligned_cols=92 Identities=22% Similarity=0.271 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhc--
Q 037446 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA-- 520 (1165)
Q Consensus 443 Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~-- 520 (1165)
-...+.+.|.+++. ...++|||+++....+.++..|..... . .+...| ...|.+++++|++
T Consensus 519 ~~~~~~~~i~~l~~----~~gg~LVlFtSy~~l~~v~~~l~~~~~-~-~ll~Q~-----------~~~~~~ll~~f~~~~ 581 (697)
T PRK11747 519 HTAEMAEFLPELLE----KHKGSLVLFASRRQMQKVADLLPRDLR-L-MLLVQG-----------DQPRQRLLEKHKKRV 581 (697)
T ss_pred HHHHHHHHHHHHHh----cCCCEEEEeCcHHHHHHHHHHHHHhcC-C-cEEEeC-----------CchHHHHHHHHHHHh
Confidence 35567777766654 345689999999999999999875320 1 122222 1246788877763
Q ss_pred --CCceEEEEcccccccccccC--CCEEEEeccCC
Q 037446 521 --GGYNVIVATSIGEEGLDIME--VDLVICFDANV 551 (1165)
Q Consensus 521 --g~~~VLVATda~~eGLDIp~--vd~VI~~D~p~ 551 (1165)
++..||++|..+.+|||+|+ +++||....|.
T Consensus 582 ~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 582 DEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ccCCCeEEEEeccccccccCCCCceEEEEEEcCCC
Confidence 66789999999999999998 78999977763
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.99 E-value=4.1e-08 Score=121.66 Aligned_cols=126 Identities=18% Similarity=0.157 Sum_probs=96.3
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHH
Q 037446 439 AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518 (1165)
Q Consensus 439 ~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~F 518 (1165)
....|+.++++.+.+.+. .+.++||-+.+.+..+.+.+.|.+.| ++...+... ..+|+.-+-.+
T Consensus 410 t~~~K~~Aiv~~I~~~~~----~gqPvLvgT~sie~SE~ls~~L~~~~--i~h~VLNAk----------~h~~EA~Iia~ 473 (822)
T COG0653 410 TEEEKFKAIVEDIKERHE----KGQPVLVGTVSIEKSELLSKLLRKAG--IPHNVLNAK----------NHAREAEIIAQ 473 (822)
T ss_pred chHHHHHHHHHHHHHHHh----cCCCEEEcCcceecchhHHHHHHhcC--CCceeeccc----------cHHHHHHHHhh
Confidence 446788999999888766 79999999999999999999999998 776666652 22455555555
Q ss_pred hcCCceEEEEcccccccccccCCC-----------EEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHH
Q 037446 519 RAGGYNVIVATSIGEEGLDIMEVD-----------LVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQ 580 (1165)
Q Consensus 519 r~g~~~VLVATda~~eGLDIp~vd-----------~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~ 580 (1165)
....-.|-|||.++++|-||.--. +||-...-.|-..--|-.||+||.| .|...+++.-+..
T Consensus 474 AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD~ 547 (822)
T COG0653 474 AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDD 547 (822)
T ss_pred cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHHH
Confidence 444456889999999999994322 5666667778888889999999999 5876666654433
No 166
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.92 E-value=3.7e-08 Score=121.28 Aligned_cols=135 Identities=15% Similarity=0.168 Sum_probs=88.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCcc
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~d 204 (1165)
-.+|-+|||||||.+.+-++.+.+. .+..++|+|+.+++|+.+....|+.. +..+.....-.++.... ....+
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~-~~~~~VLvVShRrSL~~sL~~rf~~~-~l~gFv~Y~d~~~~~i~-----~~~~~ 123 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALK-NPDKSVLVVSHRRSLTKSLAERFKKA-GLSGFVNYLDSDDYIID-----GRPYD 123 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhcc-CCCCeEEEEEhHHHHHHHHHHHHhhc-CCCcceeeecccccccc-----ccccC
Confidence 3577899999999876665554432 46789999999999999999999873 33322111111111110 02357
Q ss_pred EEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHH-------c-CCCCCeEEEEccCCCCC
Q 037446 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-------S-VPVQLRILALTATPGSK 270 (1165)
Q Consensus 205 IlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~-------~-~~~~~riL~LSATP~~~ 270 (1165)
-+++..+.|.+... -.+.++|+|||||+-.+.+. -|...++... . +....++|+|-||....
T Consensus 124 rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~q-L~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 124 RLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQ-LFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred eEEEEehhhhhccc---ccccccCEEEEehHHHHHHH-HhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 78888888877542 24667999999999887763 3444443322 1 23456889999998643
No 167
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.88 E-value=6.2e-08 Score=123.23 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeEEEEecChhHHHHHHHHHHHH
Q 037446 110 VRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIVFAAPSRPLVMQQIEACHNI 176 (1165)
Q Consensus 110 lr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rvLILvPtr~La~Q~~~e~~kl 176 (1165)
+|+.|.+....+.. .++++.+|||+|||++.+.+++...... ...+++|.+.|.+=..|..+++++.
T Consensus 11 ~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 11 IYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 48999998888875 6899999999999999999998876533 2358999999999999999999884
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.83 E-value=2.9e-08 Score=112.84 Aligned_cols=71 Identities=18% Similarity=0.330 Sum_probs=57.9
Q ss_pred CCCCChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHHHhCCCC----eEEEEecChhHHHHHHHHHHHH
Q 037446 106 VNVPVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFFRWFPDG----KIVFAAPSRPLVMQQIEACHNI 176 (1165)
Q Consensus 106 t~IQlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~----rvLILvPtr~La~Q~~~e~~kl 176 (1165)
.|+++|+.|.+.+..+.. .++|+.+|||+|||+++++|++.++...+.. +++|+++|.++..|...+++++
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 345679999997666654 6799999999999999999998776554443 8999999999999988888765
No 169
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.83 E-value=2.9e-08 Score=112.84 Aligned_cols=71 Identities=18% Similarity=0.330 Sum_probs=57.9
Q ss_pred CCCCChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHHHhCCCC----eEEEEecChhHHHHHHHHHHHH
Q 037446 106 VNVPVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFFRWFPDG----KIVFAAPSRPLVMQQIEACHNI 176 (1165)
Q Consensus 106 t~IQlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~----rvLILvPtr~La~Q~~~e~~kl 176 (1165)
.|+++|+.|.+.+..+.. .++|+.+|||+|||+++++|++.++...+.. +++|+++|.++..|...+++++
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 345679999997666654 6799999999999999999998776554443 8999999999999988888765
No 170
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.81 E-value=1.3e-08 Score=101.70 Aligned_cols=132 Identities=20% Similarity=0.242 Sum_probs=78.2
Q ss_pred CeEEEcCCCchHHHHHHHHH-HHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 125 NTLVALPTGLGKTLIAAVVI-YNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpi-l~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
-.+|-..+|+|||--.+--+ .+.+. ...++|||.|||.++....+.++.. + ..+. ...... ....+.
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~~~~i~--~~~rvLvL~PTRvva~em~~aL~~~---~-~~~~---t~~~~~---~~~g~~ 73 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIVREAIK--RRLRVLVLAPTRVVAEEMYEALKGL---P-VRFH---TNARMR---THFGSS 73 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHHHHHHH--TT--EEEEESSHHHHHHHHHHTTTS---S-EEEE---STTSS-------SSS
T ss_pred eeEEecCCCCCCcccccHHHHHHHHH--ccCeEEEecccHHHHHHHHHHHhcC---C-cccC---ceeeec---cccCCC
Confidence 35788999999998654433 33333 4679999999999999888777542 2 1111 111100 112456
Q ss_pred cEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCc-cchHHHHHHHHcCCCCCeEEEEccCCCCC
Q 037446 204 RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN-YAYCTAIRELMSVPVQLRILALTATPGSK 270 (1165)
Q Consensus 204 dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~-~~~~~~l~~L~~~~~~~riL~LSATP~~~ 270 (1165)
-|-++|+.++...+.. .....+|++||+||||..-.. -.+...++.+... ...++|.|||||+..
T Consensus 74 ~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 74 IIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPPGS 139 (148)
T ss_dssp SEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-TT-
T ss_pred cccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCCCC
Confidence 7889999999887765 556789999999999986331 0122333444332 335789999999754
No 171
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.54 E-value=1.5e-06 Score=105.74 Aligned_cols=159 Identities=22% Similarity=0.276 Sum_probs=101.5
Q ss_pred CCCCCChHHHHHHHHHhhcCC-eEEEcCCCchHHHHHHHHHHHHHHhCCCC---eEEEEecChhHHHHHHHHHHHHhCCC
Q 037446 105 PVNVPVRDYQFAITKTALFSN-TLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLVMQQIEACHNIVGIP 180 (1165)
Q Consensus 105 Pt~IQlr~yQ~eal~~ll~rn-vIl~a~TGsGKTL~a~lpil~~L~~~~~~---rvLILvPtr~La~Q~~~e~~kl~g~~ 180 (1165)
+-.+..-.|-.+++.....++ +++-..||+|||-.++-.+++.+.....+ .+.+--|++..+.-.++.+-+--+..
T Consensus 374 re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~ 453 (1282)
T KOG0921|consen 374 REELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEE 453 (1282)
T ss_pred hhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHh
Confidence 334455566777877777755 66779999999999998888877655443 47777888776666666554321111
Q ss_pred CceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccc-hHHHHHHHHcCCCCCe
Q 037446 181 QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYA-YCTAIRELMSVPVQLR 259 (1165)
Q Consensus 181 ~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~-~~~~l~~L~~~~~~~r 259 (1165)
++...|-.....-..-....-|+++|-+.+++.+..+ +..+.++|+||.|..--+.. ...+++.+.......+
T Consensus 454 ---~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~ 527 (1282)
T KOG0921|consen 454 ---VGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLR 527 (1282)
T ss_pred ---hcccccccccccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhh
Confidence 1111111110000000123468999999999988764 34577899999997644323 3445555666777889
Q ss_pred EEEEccCCCC
Q 037446 260 ILALTATPGS 269 (1165)
Q Consensus 260 iL~LSATP~~ 269 (1165)
+++||||..-
T Consensus 528 v~lmsatIdT 537 (1282)
T KOG0921|consen 528 VVLMSATIDT 537 (1282)
T ss_pred hhhhhcccch
Confidence 9999999853
No 172
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.51 E-value=8.4e-07 Score=112.48 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=91.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHH-----HHh----CCCCceEEEEeCCC----
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACH-----NIV----GIPQEWTIDMTGQI---- 191 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~-----kl~----g~~~~~v~~l~G~~---- 191 (1165)
++.+.++||+|||++|+-.|+++.......++||+||+.++...+...+. ..| +........+.++.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~ 140 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKS 140 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccccc
Confidence 68899999999999999999998877777899999999999888776554 222 22223444554433
Q ss_pred -----ChHHHHhhcC------CccEEEEcHHHHHHHHHc-C---------c-cCCCCc----cEEEEcccccccCccchH
Q 037446 192 -----SPTKRASFWK------TKRVFFVTPQVLEKDIQS-G---------T-CLMKYL----VCLVIDEAHRATGNYAYC 245 (1165)
Q Consensus 192 -----~~~~~~~l~~------~~dIlVaTpq~L~~~l~~-~---------~-~~l~~~----~lVVIDEAHrl~~~~~~~ 245 (1165)
....+..... ...|+|+|.+.|...... . . .++..+ -+||+||.|++... .
T Consensus 141 gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~---~ 217 (986)
T PRK15483 141 GRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD---N 217 (986)
T ss_pred ccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc---h
Confidence 1111111111 368999999999764221 0 0 111111 27899999999652 1
Q ss_pred HHHHHHHcCCCCCeEEEEccCCCC
Q 037446 246 TAIRELMSVPVQLRILALTATPGS 269 (1165)
Q Consensus 246 ~~l~~L~~~~~~~riL~LSATP~~ 269 (1165)
.....+..+.+. .+|.+|||-..
T Consensus 218 k~~~~i~~lnpl-~~lrysAT~~~ 240 (986)
T PRK15483 218 KFYQAIEALKPQ-MIIRFGATFPD 240 (986)
T ss_pred HHHHHHHhcCcc-cEEEEeeecCC
Confidence 123556555544 56889999754
No 173
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.43 E-value=3e-06 Score=103.64 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=85.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHH---HHHHHHh-----CCCCceEEEEeCCCChH-H
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI---EACHNIV-----GIPQEWTIDMTGQISPT-K 195 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~---~e~~kl~-----g~~~~~v~~l~G~~~~~-~ 195 (1165)
|+=|.|+||+|||++|+-.|+++=++..-.+.+||||+.++-.-+. +.....| +........+. .... .
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~--~~~~~~ 153 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD--EDIEKF 153 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec--hHHHHH
Confidence 6778999999999999999998877766779999999998866533 2333333 21122222221 1111 1
Q ss_pred HHhhcCCccEEEEcHHHHHHH------HHcCccCCCC--------c-------cEEEEcccccccCccchHHHHHHHHcC
Q 037446 196 RASFWKTKRVFFVTPQVLEKD------IQSGTCLMKY--------L-------VCLVIDEAHRATGNYAYCTAIRELMSV 254 (1165)
Q Consensus 196 ~~~l~~~~dIlVaTpq~L~~~------l~~~~~~l~~--------~-------~lVVIDEAHrl~~~~~~~~~l~~L~~~ 254 (1165)
.......+.|++.|.+.+... +........+ + -+|||||=|++.++ ......+..+
T Consensus 154 ~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~---~k~~~~i~~l 230 (985)
T COG3587 154 KFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD---DKTYGAIKQL 230 (985)
T ss_pred hhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc---hHHHHHHHhh
Confidence 112223578888888777554 1111111111 1 27999999999873 3334555554
Q ss_pred CCCCeEEEEccCCCCC
Q 037446 255 PVQLRILALTATPGSK 270 (1165)
Q Consensus 255 ~~~~riL~LSATP~~~ 270 (1165)
. +.-+|=++||-...
T Consensus 231 ~-pl~ilRfgATfkd~ 245 (985)
T COG3587 231 N-PLLILRFGATFKDE 245 (985)
T ss_pred C-ceEEEEecccchhh
Confidence 3 34678999997543
No 174
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.30 E-value=0.00018 Score=85.24 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=79.0
Q ss_pred CCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEccc--cccccc
Q 037446 460 PKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSI--GEEGLD 537 (1165)
Q Consensus 460 ~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda--~~eGLD 537 (1165)
....++|||+++=-.--.|.++|+..+ +....++- ..++.+-.++-..|..|+..||+.|.- +=+=..
T Consensus 298 ~~~~~~LIfIPSYfDfVRlRN~lk~~~--~sF~~i~E--------Yts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ 367 (442)
T PF06862_consen 298 SKMSGTLIFIPSYFDFVRLRNYLKKEN--ISFVQISE--------YTSNSDISRARSQFFHGRKPILLYTERFHFFRRYR 367 (442)
T ss_pred cCCCcEEEEecchhhhHHHHHHHHhcC--CeEEEecc--------cCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhce
Confidence 356899999999888888999999776 66665554 457788888889999999999999964 335567
Q ss_pred ccCCCEEEEeccCCCHHHHHHHHhhcCCCC
Q 037446 538 IMEVDLVICFDANVSPLRMIQRMGRTGRKH 567 (1165)
Q Consensus 538 Ip~vd~VI~~D~p~S~~~yiQriGRagR~G 567 (1165)
|.++..||.|.+|..|.-|-..+.-.+...
T Consensus 368 irGi~~viFY~~P~~p~fY~El~n~~~~~~ 397 (442)
T PF06862_consen 368 IRGIRHVIFYGPPENPQFYSELLNMLDESS 397 (442)
T ss_pred ecCCcEEEEECCCCChhHHHHHHhhhcccc
Confidence 889999999999999999988776555444
No 175
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.19 E-value=1.2e-05 Score=89.69 Aligned_cols=129 Identities=16% Similarity=0.084 Sum_probs=89.9
Q ss_pred CCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEE
Q 037446 107 NVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID 186 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~ 186 (1165)
...|++-|.-+.-.+. ++-|+.+.||=|||++++++++.... .+..|-||+....|+..-.+++..++...++.+..
T Consensus 75 g~~p~~vQll~~l~L~-~G~laEm~TGEGKTli~~l~a~~~AL--~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~ 151 (266)
T PF07517_consen 75 GLRPYDVQLLGALALH-KGRLAEMKTGEGKTLIAALPAALNAL--QGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGI 151 (266)
T ss_dssp S----HHHHHHHHHHH-TTSEEEESTTSHHHHHHHHHHHHHHT--TSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEE
T ss_pred CCcccHHHHhhhhhcc-cceeEEecCCCCcHHHHHHHHHHHHH--hcCCcEEEeccHHHhhccHHHHHHHHHHhhhcccc
Confidence 4467777777665554 46699999999999999888754433 45679999999999998777776666555566888
Q ss_pred EeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcC-------ccCCCCccEEEEccccccc
Q 037446 187 MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG-------TCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 187 l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~-------~~~l~~~~lVVIDEAHrl~ 239 (1165)
+.++.+...+... ..++|+++|...+.-++.+. ......++++||||+|.++
T Consensus 152 ~~~~~~~~~r~~~-Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 152 ITSDMSSEERREA-YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EETTTEHHHHHHH-HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred CccccCHHHHHHH-HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 8888776655443 35689999999887653221 1124678999999999876
No 176
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.15 E-value=1.7e-05 Score=88.93 Aligned_cols=142 Identities=20% Similarity=0.143 Sum_probs=93.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
...++.+.||.||--+.+-.|++.+.++ .+|.|+|..+..|..+..+.++.+. ...+.+..+.. .+.... ..-..
T Consensus 63 ~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-r~r~vwvS~s~dL~~Da~RDl~DIG-~~~i~v~~l~~-~~~~~~--~~~~~ 137 (303)
T PF13872_consen 63 AGFFLGDGTGVGKGRQIAGIILENWLRG-RKRAVWVSVSNDLKYDAERDLRDIG-ADNIPVHPLNK-FKYGDI--IRLKE 137 (303)
T ss_pred cEEEeccCCCcCccchhHHHHHHHHHcC-CCceEEEECChhhhhHHHHHHHHhC-CCcccceechh-hccCcC--CCCCC
Confidence 4688889999999998888888776654 3579999999999999999999864 33333333221 111110 11245
Q ss_pred cEEEEcHHHHHHHHHcC---ccC--------CCCc-cEEEEcccccccCccc-------hHHHHHHHHcCCCCCeEEEEc
Q 037446 204 RVFFVTPQVLEKDIQSG---TCL--------MKYL-VCLVIDEAHRATGNYA-------YCTAIRELMSVPVQLRILALT 264 (1165)
Q Consensus 204 dIlVaTpq~L~~~l~~~---~~~--------l~~~-~lVVIDEAHrl~~~~~-------~~~~l~~L~~~~~~~riL~LS 264 (1165)
.|+|+||..|....... ... -.++ .+||+||||++++..+ ....+..|.+..+..|++.+|
T Consensus 138 GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~S 217 (303)
T PF13872_consen 138 GVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYAS 217 (303)
T ss_pred CccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEec
Confidence 79999999998874311 000 0223 3899999999987422 112334444444666899999
Q ss_pred cCCCCC
Q 037446 265 ATPGSK 270 (1165)
Q Consensus 265 ATP~~~ 270 (1165)
||....
T Consensus 218 ATgase 223 (303)
T PF13872_consen 218 ATGASE 223 (303)
T ss_pred ccccCC
Confidence 998654
No 177
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.11 E-value=1.3e-05 Score=87.12 Aligned_cols=67 Identities=30% Similarity=0.327 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHhhcCC--eEEEcCCCchHHHHHHHHHHHHH------HhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 109 PVRDYQFAITKTALFSN--TLVALPTGLGKTLIAAVVIYNFF------RWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~rn--vIl~a~TGsGKTL~a~lpil~~L------~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
+|++.|.+++..++... .+|.+|.|+|||.+....+...+ ....++++|+++|+..-+++..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 46788999999998854 89999999999976655555542 245678999999999999999998887
No 178
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=98.02 E-value=7.8e-06 Score=103.53 Aligned_cols=157 Identities=14% Similarity=0.105 Sum_probs=104.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhC----------------CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEE
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWF----------------PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDM 187 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~----------------~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l 187 (1165)
.+++++..+|+|||..-+...+..+... .-|.+|||+|. ++..||..++.+..... +.+..+
T Consensus 375 ~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~Y 452 (1394)
T KOG0298|consen 375 KRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLLY 452 (1394)
T ss_pred cceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEEE
Confidence 3579999999999998766655432110 12468999999 99999999999875432 456666
Q ss_pred eCCCChHH-HHhhcCCccEEEEcHHHHHHHHHcCcc--------------C------CCCccEEEEcccccccCccchHH
Q 037446 188 TGQISPTK-RASFWKTKRVFFVTPQVLEKDIQSGTC--------------L------MKYLVCLVIDEAHRATGNYAYCT 246 (1165)
Q Consensus 188 ~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l~~~~~--------------~------l~~~~lVVIDEAHrl~~~~~~~~ 246 (1165)
.|-.+... .....-++|||+|||..|...+..... . .-.|=-|++|||+.+-...++.
T Consensus 453 ~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~~- 531 (1394)
T KOG0298|consen 453 FGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSAA- 531 (1394)
T ss_pred echhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHHH-
Confidence 65433211 113345799999999999987753210 0 1113358999999987633332
Q ss_pred HHHHHHcCCCCCeEEEEccCCCCChHHHHHHHHhhcccc
Q 037446 247 AIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYIST 285 (1165)
Q Consensus 247 ~l~~L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~ 285 (1165)
.+-++.+. ....++.||||..+..++.-|+..|...+
T Consensus 532 -a~M~~rL~-~in~W~VTGTPiq~Iddl~~Ll~fLk~~P 568 (1394)
T KOG0298|consen 532 -AEMVRRLH-AINRWCVTGTPIQKIDDLFPLLEFLKLPP 568 (1394)
T ss_pred -HHHHHHhh-hhceeeecCCchhhhhhhHHHHHHhcCCC
Confidence 23333333 33569999999877888888888776555
No 179
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.91 E-value=3.6e-06 Score=104.62 Aligned_cols=143 Identities=22% Similarity=0.403 Sum_probs=109.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
.+.++.+|||+|||++|-+.++..+...+..++++|+|-++|+..-.+...+..-.++..++.++|+...+-. -...+
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~--~v~~~ 1021 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDVK--AVREA 1021 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCChh--heecC
Confidence 5789999999999999999999988888899999999999999887777777666667889999998876522 22568
Q ss_pred cEEEEcHHHHHHHHHcC--ccCCCCccEEEEcccccccCccchHHHHHHHH--------cCCCCCeEEEEccCCCCC
Q 037446 204 RVFFVTPQVLEKDIQSG--TCLMKYLVCLVIDEAHRATGNYAYCTAIRELM--------SVPVQLRILALTATPGSK 270 (1165)
Q Consensus 204 dIlVaTpq~L~~~l~~~--~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~--------~~~~~~riL~LSATP~~~ 270 (1165)
+++|+||++.-.....+ .-.+.++.++|+||.|.+... +..++..+. ....+.|++++|--+.+.
T Consensus 1022 ~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~--rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na 1096 (1230)
T KOG0952|consen 1022 DIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED--RGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANA 1096 (1230)
T ss_pred ceEEcccccccCccccccchhhhccccceeecccccccCC--CcceEEEEeeccccCccccCcchhhhhHhhhhhcc
Confidence 99999999998876643 234678999999999999873 222222221 124456777776656554
No 180
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.87 E-value=5.2e-05 Score=88.93 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=73.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccE
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dI 205 (1165)
+||.+..|||||++++-.+..+.....+.+++++++..+|.....+.+..... + .....
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-~--------------------~~~~~ 62 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN-P--------------------KLKKS 62 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc-c--------------------chhhh
Confidence 67889999999999888877763344567899999999999888877766420 0 11122
Q ss_pred EEEcHHHHHHHHHcCccCCCCccEEEEcccccccCc------cchHHHHHHHHcC
Q 037446 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN------YAYCTAIRELMSV 254 (1165)
Q Consensus 206 lVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~------~~~~~~l~~L~~~ 254 (1165)
.+..+..+.+.+.........+++|||||||++... ......+..+++.
T Consensus 63 ~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 63 DFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 344555555443322345678999999999999872 1234566666654
No 181
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.0024 Score=75.12 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=86.1
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHH
Q 037446 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEK 517 (1165)
Q Consensus 438 ~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~ 517 (1165)
.....++...+..|.--+. ......+|||.++--.--.+..++++.+ +....++-. .+...-.++-+-
T Consensus 530 ~~~D~RFkyFv~~ImPq~~--k~t~s~~LiyIPSYfDFVRvRNy~K~e~--i~F~~i~EY--------ssk~~vsRAR~l 597 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLI--KRTESGILIYIPSYFDFVRVRNYMKKEE--ISFVMINEY--------SSKSKVSRAREL 597 (698)
T ss_pred cCchHHHHHHHHhhchhhc--ccccCceEEEecchhhHHHHHHHhhhhh--cchHHHhhh--------hhHhhhhHHHHH
Confidence 3567788877776654443 2234678999998887788899998877 555444432 234444556677
Q ss_pred HhcCCceEEEEccc--ccccccccCCCEEEEeccCCCHHHH---HHHHhhcCCCCC
Q 037446 518 FRAGGYNVIVATSI--GEEGLDIMEVDLVICFDANVSPLRM---IQRMGRTGRKHD 568 (1165)
Q Consensus 518 Fr~g~~~VLVATda--~~eGLDIp~vd~VI~~D~p~S~~~y---iQriGRagR~Gq 568 (1165)
|..|...||+-|.- +=+--+|.+|..||+|.+|.+|.-| +-+++|+.-.|.
T Consensus 598 F~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn 653 (698)
T KOG2340|consen 598 FFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGN 653 (698)
T ss_pred HHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCC
Confidence 88999999999865 4467899999999999999998765 567777766663
No 182
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.56 E-value=0.0051 Score=75.12 Aligned_cols=155 Identities=18% Similarity=0.186 Sum_probs=92.5
Q ss_pred ChHHHHHHHHHhhc-----------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhC
Q 037446 110 VRDYQFAITKTALF-----------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVG 178 (1165)
Q Consensus 110 lr~yQ~eal~~ll~-----------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g 178 (1165)
+...|.+++--+.. -..||.+..|.||--+.+-.|++...+ ..+++|++.-...|-.+..+.++.+ |
T Consensus 265 lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk-GRKrAlW~SVSsDLKfDAERDL~Di-g 342 (1300)
T KOG1513|consen 265 LSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK-GRKRALWFSVSSDLKFDAERDLRDI-G 342 (1300)
T ss_pred hhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc-ccceeEEEEeccccccchhhchhhc-C
Confidence 55667777766554 146777777777755444444443333 3468999988889999999999885 5
Q ss_pred CCCceEEEEe----CCCChHHHHhhcCCccEEEEcHHHHHHHHHcC------------ccCCCCc-cEEEEcccccccCc
Q 037446 179 IPQEWTIDMT----GQISPTKRASFWKTKRVFFVTPQVLEKDIQSG------------TCLMKYL-VCLVIDEAHRATGN 241 (1165)
Q Consensus 179 ~~~~~v~~l~----G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~------------~~~l~~~-~lVVIDEAHrl~~~ 241 (1165)
.+.+.+..+. +..+..+... -...|+|+||..|...-... .+.-.+| ++|||||||+.++-
T Consensus 343 A~~I~V~alnK~KYakIss~en~n--~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL 420 (1300)
T KOG1513|consen 343 ATGIAVHALNKFKYAKISSKENTN--TKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNL 420 (1300)
T ss_pred CCCccceehhhcccccccccccCC--ccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhccc
Confidence 5544444332 1111110000 12479999998887643310 0111222 48999999999871
Q ss_pred ------c--chHHHHHHHHcCCCCCeEEEEccCCC
Q 037446 242 ------Y--AYCTAIRELMSVPVQLRILALTATPG 268 (1165)
Q Consensus 242 ------~--~~~~~l~~L~~~~~~~riL~LSATP~ 268 (1165)
. -....+-.|-+..+..|++.-|||-.
T Consensus 421 ~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGA 455 (1300)
T KOG1513|consen 421 VPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGA 455 (1300)
T ss_pred ccccCCCcCcccHhHHHHHHhCCCceEEEeeccCC
Confidence 0 12234445555556779999999964
No 183
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=97.53 E-value=0.027 Score=70.18 Aligned_cols=363 Identities=16% Similarity=0.206 Sum_probs=209.5
Q ss_pred ChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC--CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEE
Q 037446 110 VRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID 186 (1165)
Q Consensus 110 lr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~--~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~ 186 (1165)
+-.||++.+..++. ..+++..+.|.|=-- .+++.+... ++..+|+|- +.+.-.+ .|...+..+ .+..
T Consensus 14 lL~Ye~qv~~~ll~~d~~L~V~a~GLsl~~----l~~~~l~~~s~~~sL~LvLN-~~~~ee~---~f~s~lk~~--~~t~ 83 (892)
T KOG0442|consen 14 LLEYEQQVLLELLEADGNLLVLAPGLSLLR----LVAELLILFSPPGSLVLVLN-TQEAEEE---YFSSKLKEP--LVTE 83 (892)
T ss_pred cchhHHHHHHhhhcccCceEEecCCcCHHH----HHHHHHHHhCCccceEEEec-CchhhHH---HHHHhcCcC--CCcc
Confidence 56788899988885 555888888988432 223333222 223344443 4444444 233332222 1222
Q ss_pred EeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccC
Q 037446 187 MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266 (1165)
Q Consensus 187 l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSAT 266 (1165)
.....+..+|....-...|.++|.-.|.-++..+.+....+..++++-||.+.+...-+.+++..+..++.-.+=++|-.
T Consensus 84 ~~s~ls~~~R~~~Yl~GGv~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~ets~eaFIlRl~R~knk~gfIkAFsd~ 163 (892)
T KOG0442|consen 84 DPSELSVNKRRSKYLEGGVFFISSRILVVDLLTGRIPTEKITGILVLNAHTISETSQEAFILRLYRSKNKTGFIKAFSDS 163 (892)
T ss_pred ChhhcchhhhHHhhhcCCeEEeeeceeeeehhcCccchhHcceEEEechhhhhhcchhHHHHHHHHHhcCCcceeccccC
Confidence 23345556666666678899999999999988899999999999999999999865555677777766666677788887
Q ss_pred CCCCh---HHHHHHHHhhccccccccCCchhhhhhhhc--cCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccc
Q 037446 267 PGSKQ---QTIQHIIDNLYISTLEYRNESDQDVSSYVH--NRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341 (1165)
Q Consensus 267 P~~~~---~~l~~Li~~L~is~i~~~~~~~~~i~~y~~--~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~ 341 (1165)
|..-. ..+...+++|++..+.+-......+...+. ++.+..+.+.++.....+...+.+++..++..+....--
T Consensus 164 P~sf~~gf~~l~r~mR~Lfvr~v~l~PRF~~~V~s~L~~~~~kVvei~V~~s~~~~~iQ~~lleii~~clrel~r~n~~- 242 (892)
T KOG0442|consen 164 PESFVSGFSHLERKMRNLFVRHVLLWPRFHVNVESSLNQLPPKVVEINVSMSNSMSQIQSHLLEIIKKCLRELKRLNPE- 242 (892)
T ss_pred chhhhccchHHHHHHHHHHhhhheeccchHhHHhhhhccCCCceEEEEeecCccHHHHHHHHHHHHHHHHHHHHhhCcc-
Confidence 75433 456677788877766554444444444444 456667777888888899999999998887766544310
Q ss_pred cccccCCchhhhhh-hhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhc-------c
Q 037446 342 NRDYQTLSPVDLLN-SRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQG-------S 413 (1165)
Q Consensus 342 ~~~~~~l~p~~l~~-~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~-------~ 413 (1165)
-+...|....... ...+..+.....+.+-.........+.+..+-.+..++..+....++..+....... .
T Consensus 243 -~~~ee~~~E~~~~~sf~~i~~~~Ld~~wh~ls~ktkqlv~Dl~~LR~Ll~~L~~~D~vsfl~~l~tlr~~~~~~s~~s~ 321 (892)
T KOG0442|consen 243 -LDMEEVNVENILDKSFDKILRSQLDPIWHQLSTKTKQLVNDLKTLRILLKSLVSYDAVSFLKILKTLRNSEIVSSIPSG 321 (892)
T ss_pred -cchhhcchhhcccccHHHHHHHhhchhhhhccHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhhhccCCCC
Confidence 0111111111100 001111111111222233333334444445555555566666656653333221111 1
Q ss_pred chhcccchhhHHHHHHHHHh--hhccCCCChHHHHHHHHHHHhhc------ccCCCCCeEEEEeCchHHHHHHHHHHHh
Q 037446 414 FARFMSKNEDIRKVKLLMQQ--SISHGAQSPKLSKMLEVLVDHFK------TKDPKHSRVIIFSNFRGSVRDIMNALAT 484 (1165)
Q Consensus 414 ~~~ll~~~~~~~~v~~~l~~--~~~~~~~s~Kl~~LlelL~~~~~------~~~~~~~kvIVF~~sr~~ae~L~~~L~~ 484 (1165)
|..+-+.+.-+......... ........+|+..|.++|.+... ........|||-|..-..|..|.+.|..
T Consensus 322 Wl~ldss~~i~~~a~~rv~~~~~e~~lE~~pKw~~Ltdil~~e~~~~~~~~~~~~~~~~Vlv~c~dertC~ql~d~lt~ 400 (892)
T KOG0442|consen 322 WLLLDSSNKIFEEARKRVYSLENESELEECPKWEVLTDILFKEIEHEKERADRSNDQGSVLVACSDERTCAQLRDYLTL 400 (892)
T ss_pred ceecchHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHhhhhhHHHHhhhcCCCCceEEEeccchhHHHHHHHHhc
Confidence 21111111112211111111 11244678999999999933221 1234567899999999999999999975
No 184
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.48 E-value=0.00018 Score=75.36 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=58.3
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcc--cccccccc
Q 037446 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATS--IGEEGLDI 538 (1165)
Q Consensus 461 ~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATd--a~~eGLDI 538 (1165)
.++.+|||+++....+.+.+.+...+..-....+.- +...+..+++.|+.++-.||+++. .+.+|||+
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q----------~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~ 77 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ----------GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDF 77 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES----------TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec----------CcchHHHHHHHHHhccCeEEEEEecccEEEeecC
Confidence 358999999999999999999876541011112221 345788999999999999999999 99999999
Q ss_pred cC--CCEEEEeccCC
Q 037446 539 ME--VDLVICFDANV 551 (1165)
Q Consensus 539 p~--vd~VI~~D~p~ 551 (1165)
++ ++.||....|.
T Consensus 78 ~~~~~r~vii~glPf 92 (167)
T PF13307_consen 78 PGDLLRAVIIVGLPF 92 (167)
T ss_dssp ECESEEEEEEES---
T ss_pred CCchhheeeecCCCC
Confidence 97 88999988883
No 185
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.44 E-value=0.00058 Score=74.21 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=88.4
Q ss_pred CCCCChHHHHHHHHHhhc----CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCC-C
Q 037446 106 VNVPVRDYQFAITKTALF----SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGI-P 180 (1165)
Q Consensus 106 t~IQlr~yQ~eal~~ll~----rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~-~ 180 (1165)
.+|.+|+-|.++...+.. .|.+..+-||.|||-+ ++|++.++......-+.++||. +|..|..+.+...+|. -
T Consensus 20 ~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~LvrviVpk-~Ll~q~~~~L~~~lg~l~ 97 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSRLVRVIVPK-ALLEQMRQMLRSRLGGLL 97 (229)
T ss_pred cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCcEEEEEcCH-HHHHHHHHHHHHHHHHHh
Confidence 467899999999999886 6899999999999987 6677766655555668888898 9999999988776542 1
Q ss_pred CceEE--EEeCCCChH--H----H---HhhcCCccEEEEcHHHHHHHHHc-------Ccc-----------CCCCccEEE
Q 037446 181 QEWTI--DMTGQISPT--K----R---ASFWKTKRVFFVTPQVLEKDIQS-------GTC-----------LMKYLVCLV 231 (1165)
Q Consensus 181 ~~~v~--~l~G~~~~~--~----~---~~l~~~~dIlVaTpq~L~~~l~~-------~~~-----------~l~~~~lVV 231 (1165)
+..+. -+.-....+ . + ........|+++||+.++...-. +.. .+.+-..=|
T Consensus 98 ~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdi 177 (229)
T PF12340_consen 98 NRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDI 177 (229)
T ss_pred CCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeE
Confidence 22222 222222211 1 0 12234568999999988765321 000 112233468
Q ss_pred EcccccccC
Q 037446 232 IDEAHRATG 240 (1165)
Q Consensus 232 IDEAHrl~~ 240 (1165)
+||+|.++.
T Consensus 178 lDEsDe~L~ 186 (229)
T PF12340_consen 178 LDESDEILS 186 (229)
T ss_pred eECchhccC
Confidence 899998876
No 186
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.44 E-value=0.00048 Score=74.15 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhH
Q 037446 110 VRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPL 165 (1165)
Q Consensus 110 lr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~L 165 (1165)
....|..++..+.. .-+++.++.|||||+.++..+++.+..+.-.+++|+-|..+.
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 34569999999987 457778999999999999999999888777799999888643
No 187
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.36 E-value=0.00072 Score=81.09 Aligned_cols=72 Identities=29% Similarity=0.360 Sum_probs=61.4
Q ss_pred CCCCCCChHHHHHHHHHhhcC-CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHH
Q 037446 104 YPVNVPVRDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNI 176 (1165)
Q Consensus 104 ~Pt~IQlr~yQ~eal~~ll~r-nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl 176 (1165)
.|.--+|+.-|..|+..++.+ =.||.+|.|+|||.+.+..++++.+. ..+++||++|..--++|.++.+.+.
T Consensus 405 ~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-HAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-cCCceEEEcccchhHHHHHHHHHhc
Confidence 344457999999999999985 47899999999999999988888766 5679999999988888988888773
No 188
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.32 E-value=0.00066 Score=81.34 Aligned_cols=66 Identities=23% Similarity=0.248 Sum_probs=54.3
Q ss_pred CCCCChHHHHHHHHHhhcC--CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHH
Q 037446 106 VNVPVRDYQFAITKTALFS--NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEAC 173 (1165)
Q Consensus 106 t~IQlr~yQ~eal~~ll~r--nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~ 173 (1165)
.+-.+..-|.+++..+... -.++.+|+|+|||.+....|.+++.+ ++++||++||..-++++.+.+
T Consensus 182 ~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred CCccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--CCeEEEEcCchHHHHHHHHHh
Confidence 3345777899999988873 36788999999999988888888764 478999999999888888854
No 189
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.24 E-value=0.002 Score=69.28 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHhhc-C--CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHH
Q 037446 109 PVRDYQFAITKTALF-S--NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEA 172 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-r--nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e 172 (1165)
+|.+-|.+++..++. . -.+|.++.|+|||.+... +...+... +.++++++||...+....+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~-~~~~~~~~-g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKA-LAEALEAA-GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH-HHHHHHHT-T--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH-HHHHHHhC-CCeEEEECCcHHHHHHHHHh
Confidence 356779999999965 2 367789999999986544 44444443 57899999997666654433
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.20 E-value=0.0021 Score=80.87 Aligned_cols=65 Identities=23% Similarity=0.204 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHhhc--CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 109 PVRDYQFAITKTALF--SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~--rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
.+...|.+++..++. ...+|.+|+|+|||.+....+.+++.. +.++|+++||..-+.+..+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~--g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR--GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEEcCcHHHHHHHHHHHHh
Confidence 578999999999886 468899999999999887777776654 44899999999889888888876
No 191
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.04 E-value=0.0031 Score=78.45 Aligned_cols=45 Identities=24% Similarity=0.189 Sum_probs=36.1
Q ss_pred CCCCCCCCCChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHH
Q 037446 101 TWIYPVNVPVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 101 g~~~Pt~IQlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil 145 (1165)
|...-.++|+|+-|.+.+..++. .++++.+|||+|||+..+...+
T Consensus 13 Gv~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~L 62 (945)
T KOG1132|consen 13 GVPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTL 62 (945)
T ss_pred CceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHH
Confidence 44445568999999999988876 6899999999999997665443
No 192
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.0024 Score=76.19 Aligned_cols=139 Identities=17% Similarity=0.162 Sum_probs=81.9
Q ss_pred EEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCC--CceEEEEeCCCChHH-----HHhhc
Q 037446 128 VALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIP--QEWTIDMTGQISPTK-----RASFW 200 (1165)
Q Consensus 128 l~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~--~~~v~~l~G~~~~~~-----~~~l~ 200 (1165)
..++||+|||++.+..|+++...+ -...||.|....++......|-.-.... -..++. .++....- -...-
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg-yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~-~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG-YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENIN-INDENIEIKKVNNFSEHN 79 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc-hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhh-cCCceeeeeeecccCccC
Confidence 358999999999999999887654 3468888888788777665553211100 000111 11111100 01122
Q ss_pred CCccEEEEcHHHHHHHHHcC---cc---CCCCccEEEE-cccccccCc------------cchHHHHHHHHcCCCCCeEE
Q 037446 201 KTKRVFFVTPQVLEKDIQSG---TC---LMKYLVCLVI-DEAHRATGN------------YAYCTAIRELMSVPVQLRIL 261 (1165)
Q Consensus 201 ~~~dIlVaTpq~L~~~l~~~---~~---~l~~~~lVVI-DEAHrl~~~------------~~~~~~l~~L~~~~~~~riL 261 (1165)
....|+++|.|.|..++.+. .+ .+.+..+|.+ |||||+... ..+...+.--...++..-+|
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~l 159 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLL 159 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceee
Confidence 45789999999999988642 22 2445556655 999999641 01222222223345566778
Q ss_pred EEccCCC
Q 037446 262 ALTATPG 268 (1165)
Q Consensus 262 ~LSATP~ 268 (1165)
.+|||.+
T Consensus 160 ef~at~~ 166 (812)
T COG3421 160 EFSATIP 166 (812)
T ss_pred hhhhcCC
Confidence 8999976
No 193
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.95 E-value=0.0017 Score=64.38 Aligned_cols=117 Identities=20% Similarity=0.233 Sum_probs=62.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHh----CCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhh
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRW----FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASF 199 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~----~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l 199 (1165)
+-++|.+++|+|||.+....+..+... ....-+.+-+|...-...+...+...++.+... ......
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~---- 74 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------RQTSDE---- 74 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS------TS-HHH----
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc------cCCHHH----
Confidence 457899999999999877766655321 112234445555443556666666666654221 001000
Q ss_pred cCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCC
Q 037446 200 WKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267 (1165)
Q Consensus 200 ~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP 267 (1165)
+ .+.+...+.... ..+|||||||++. .......++.+.+ ...-.+.++|||
T Consensus 75 ------l---~~~~~~~l~~~~-----~~~lviDe~~~l~-~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 75 ------L---RSLLIDALDRRR-----VVLLVIDEADHLF-SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp ------H---HHHHHHHHHHCT-----EEEEEEETTHHHH-THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred ------H---HHHHHHHHHhcC-----CeEEEEeChHhcC-CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 0 023333333222 2789999999983 1245555555555 333457788888
No 194
>PRK10536 hypothetical protein; Provisional
Probab=96.91 E-value=0.017 Score=64.25 Aligned_cols=55 Identities=18% Similarity=0.082 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChh
Q 037446 110 VRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164 (1165)
Q Consensus 110 lr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~ 164 (1165)
....|..++.++.. ..+++.+++|+|||+.+.....+.+....-.+++|.=|+.+
T Consensus 60 ~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 60 RNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred CCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 34557778877776 56777899999999999888887664444456677666643
No 195
>PF13245 AAA_19: Part of AAA domain
Probab=96.81 E-value=0.0038 Score=56.53 Aligned_cols=49 Identities=27% Similarity=0.279 Sum_probs=39.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHh--CCCCeEEEEecChhHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRW--FPDGKIVFAAPSRPLVMQQIEAC 173 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~--~~~~rvLILvPtr~La~Q~~~e~ 173 (1165)
-++|.++.|+|||.+.+-.+..++.. .++.++||++|++..+++..+.+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 35569999999998877777777642 23678999999999999887777
No 196
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.70 E-value=0.015 Score=72.66 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCC---CCeEEEEecChhHHHHHHHHHHH
Q 037446 112 DYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 112 ~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~---~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
++|+.++..++. +-++|.++.|+|||.+....+..+....+ ..++++.+||---+....+.+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 689988888887 56788999999999976555444433222 24799999997666666555544
No 197
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.54 E-value=0.017 Score=72.21 Aligned_cols=65 Identities=22% Similarity=0.232 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC--CCCeEEEEecChhHHHHHHHHHHH
Q 037446 111 RDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 111 r~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~--~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
-++|++++..+.. +-++|.++.|+|||.+....+..++... +..++++++||.--+....+.+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 4789999988887 4588899999999987655554443322 235789999998777766666654
No 198
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.49 E-value=0.025 Score=72.47 Aligned_cols=60 Identities=20% Similarity=0.143 Sum_probs=43.0
Q ss_pred CCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeEEEEecChhHHH
Q 037446 107 NVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIVFAAPSRPLVM 167 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rvLILvPtr~La~ 167 (1165)
.+.+.+.|.+++..+.. +-++|.++.|+|||.+....+ ..+... +..++++++||-.-+.
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~-~~~~~~~~~~~v~l~ApTg~AA~ 382 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAII-ELAEELGGLLPVGLAAPTGRAAK 382 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHH-HHHHHcCCCceEEEEeCchHHHH
Confidence 35688889999999876 568889999999998754433 333322 2257888999955554
No 199
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.039 Score=65.39 Aligned_cols=127 Identities=20% Similarity=0.232 Sum_probs=72.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHh--CCCCeEEEEe-cC-hhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRW--FPDGKIVFAA-PS-RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW 200 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~--~~~~rvLILv-Pt-r~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~ 200 (1165)
.+++.++||+|||.+++-.+..+... ..+.++.++. -+ |.-+..|.+.+.+.+|.+ +.
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp---v~--------------- 237 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP---VK--------------- 237 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc---eE---------------
Confidence 47788999999999988777655432 1234444443 33 344444444444444543 11
Q ss_pred CCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHc-CCCC-CeEEEEccCCCCChHHHHHHH
Q 037446 201 KTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS-VPVQ-LRILALTATPGSKQQTIQHII 278 (1165)
Q Consensus 201 ~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~-~~~~-~riL~LSATP~~~~~~l~~Li 278 (1165)
++.++..+...+.. ..+.++||||++.+...+......+..++. ...+ ..+|.|+||-.. .++..++
T Consensus 238 -----~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~ 306 (388)
T PRK12723 238 -----AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIF 306 (388)
T ss_pred -----eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHH
Confidence 12244555554432 357899999999998753222233344443 3223 467999999863 3344444
Q ss_pred Hh
Q 037446 279 DN 280 (1165)
Q Consensus 279 ~~ 280 (1165)
..
T Consensus 307 ~~ 308 (388)
T PRK12723 307 HQ 308 (388)
T ss_pred HH
Confidence 43
No 200
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.40 E-value=0.0018 Score=86.23 Aligned_cols=106 Identities=27% Similarity=0.325 Sum_probs=83.2
Q ss_pred CCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCC---CCHHHHHHHHHHHhcCCceEEEEcccccccccc
Q 037446 462 HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKG---QSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDI 538 (1165)
Q Consensus 462 ~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~gg---ms~~eR~~il~~Fr~g~~~VLVATda~~eGLDI 538 (1165)
.-.+|+||..+..+..+.+.+...+. ..+..+.|.....+-.. ..+..+.+++..|...++++|++|.++.+|+|+
T Consensus 292 ~l~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~ 370 (1606)
T KOG0701|consen 292 TLSGIIFVDQRYTAYVLLELLREIFS-NDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDV 370 (1606)
T ss_pred hhhheeecccchHHHHHHHHHHHhhc-cCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcch
Confidence 45789999999999988888877642 33344555322111111 123347889999999999999999999999999
Q ss_pred cCCCEEEEeccCCCHHHHHHHHhhcCCCCC
Q 037446 539 MEVDLVICFDANVSPLRMIQRMGRTGRKHD 568 (1165)
Q Consensus 539 p~vd~VI~~D~p~S~~~yiQriGRagR~Gq 568 (1165)
+.|+.|+.++.|.....|+|+.||+-+...
T Consensus 371 ~~~~~~~~~~~~~~~~~~vq~~~r~~~~~~ 400 (1606)
T KOG0701|consen 371 PKCNLVVLFDAPTYYRSYVQKKGRARAADS 400 (1606)
T ss_pred hhhhhheeccCcchHHHHHHhhcccccchh
Confidence 999999999999999999999999988763
No 201
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.37 E-value=0.012 Score=66.21 Aligned_cols=79 Identities=20% Similarity=0.335 Sum_probs=59.2
Q ss_pred HHHHHHhcCCceEEEEcccccccccccC--------CCEEEEeccCCCHHHHHHHHhhcCCCCCCccc---eecC--hhH
Q 037446 513 AVLEKFRAGGYNVIVATSIGEEGLDIME--------VDLVICFDANVSPLRMIQRMGRTGRKHDGRIP---HIFK--PEV 579 (1165)
Q Consensus 513 ~il~~Fr~g~~~VLVATda~~eGLDIp~--------vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv---~v~~--~d~ 579 (1165)
...++|.+|+..|+|-+++++.||.+.+ -++-|.+.+||+....+|..||++|.||-..+ +++. +-+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4567899999999999999999998864 23567799999999999999999999985432 2222 223
Q ss_pred HHHHHHHHHHHh
Q 037446 580 QFVELSIEQYVS 591 (1165)
Q Consensus 580 ~~~~~~Ie~~l~ 591 (1165)
..+...+.+.+.
T Consensus 132 ~Rfas~va~rL~ 143 (278)
T PF13871_consen 132 RRFASTVARRLE 143 (278)
T ss_pred HHHHHHHHHHHh
Confidence 344445655553
No 202
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.35 E-value=0.04 Score=69.73 Aligned_cols=43 Identities=23% Similarity=0.250 Sum_probs=31.4
Q ss_pred CCCCCChHHHHHHHHHhhc--------CCe-EEEcCCCchHHHHHHHHHHHH
Q 037446 105 PVNVPVRDYQFAITKTALF--------SNT-LVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 105 Pt~IQlr~yQ~eal~~ll~--------rnv-Il~a~TGsGKTL~a~lpil~~ 147 (1165)
|..+.-|.-|.+.+..++. .++ .|.++||+|||.+.-..+.++
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrEL 805 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLL 805 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 5667788888776665554 245 489999999999977766444
No 203
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.27 E-value=0.057 Score=63.54 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=85.2
Q ss_pred cCCHHHHHHHHHCCCC---CCCCCCChHHHHHHHHHhhc------------CCeEEEcCCCchHHHHHHHHHHHHHHhCC
Q 037446 88 SLCHVQIDAEAAKTWI---YPVNVPVRDYQFAITKTALF------------SNTLVALPTGLGKTLIAAVVIYNFFRWFP 152 (1165)
Q Consensus 88 ~L~~~Ll~~L~~~g~~---~Pt~IQlr~yQ~eal~~ll~------------rnvIl~a~TGsGKTL~a~lpil~~L~~~~ 152 (1165)
++++.+.+.+...--. ..+.-+.+.|...++..... +.+++.+|||+|||.+....+..+.....
T Consensus 87 g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G 166 (374)
T PRK14722 87 GFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFG 166 (374)
T ss_pred CCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 7777777776553111 11111234444444433221 35788999999999998887766544322
Q ss_pred CCeEEEEecC--hhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEE
Q 037446 153 DGKIVFAAPS--RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCL 230 (1165)
Q Consensus 153 ~~rvLILvPt--r~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lV 230 (1165)
..++.++.-- +.=+.++.+.+.+.+|.+ +. .+.+++.+...+. .+.+.++|
T Consensus 167 ~~~V~lit~D~~R~ga~EqL~~~a~~~gv~---~~--------------------~~~~~~~l~~~l~----~l~~~DlV 219 (374)
T PRK14722 167 ASKVALLTTDSYRIGGHEQLRIFGKILGVP---VH--------------------AVKDGGDLQLALA----ELRNKHMV 219 (374)
T ss_pred CCeEEEEecccccccHHHHHHHHHHHcCCc---eE--------------------ecCCcccHHHHHH----HhcCCCEE
Confidence 2355544422 122445555555555543 11 1223333333332 23457999
Q ss_pred EEcccccccCccchHHHHHHHHcCC-CCCeEEEEccCCCCC
Q 037446 231 VIDEAHRATGNYAYCTAIRELMSVP-VQLRILALTATPGSK 270 (1165)
Q Consensus 231 VIDEAHrl~~~~~~~~~l~~L~~~~-~~~riL~LSATP~~~ 270 (1165)
+||.+=+...+......+..+.... ....+|.++||-...
T Consensus 220 LIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~ 260 (374)
T PRK14722 220 LIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGD 260 (374)
T ss_pred EEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChH
Confidence 9999977654334555556554433 234678999997543
No 204
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.11 Score=63.44 Aligned_cols=118 Identities=18% Similarity=0.148 Sum_probs=63.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe-c-ChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA-P-SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK 201 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv-P-tr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~ 201 (1165)
+.+++.+++|+|||.++...+..+.....+.++.++. . .+.-+..+...+.+.++.+ +.
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~---v~---------------- 411 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIA---VH---------------- 411 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCce---eE----------------
Confidence 3567789999999998877666554443334555543 2 2332333322222222221 10
Q ss_pred CccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCCC
Q 037446 202 TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPG 268 (1165)
Q Consensus 202 ~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP~ 268 (1165)
...++..+...+. .+.++++||||.+-+...+......+..+........+|.+++++.
T Consensus 412 ----~a~d~~~L~~aL~----~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss 470 (559)
T PRK12727 412 ----EADSAESLLDLLE----RLRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH 470 (559)
T ss_pred ----ecCcHHHHHHHHH----HhccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 0113334444444 2346899999999876543233334444443333456788888874
No 205
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.10 E-value=0.031 Score=65.98 Aligned_cols=66 Identities=18% Similarity=0.390 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHHHhCC--CCeEEEEecChhHHHHHHHHHHHH
Q 037446 111 RDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFFRWFP--DGKIVFAAPSRPLVMQQIEACHNI 176 (1165)
Q Consensus 111 r~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L~~~~--~~rvLILvPtr~La~Q~~~e~~kl 176 (1165)
++-|.+-...+.. .++|+.+|+|+|||...+..+..+....+ ..+.++..-|..=++....+++++
T Consensus 18 YPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 18 YPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred CHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 3445544444433 68999999999999988877776655544 346777777776677777776654
No 206
>PRK04296 thymidine kinase; Provisional
Probab=95.99 E-value=0.022 Score=61.03 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=25.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
.++.+++|+|||..++-.+..+.. .+.+++|+-|.
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~--~g~~v~i~k~~ 39 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE--RGMKVLVFKPA 39 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH--cCCeEEEEecc
Confidence 578899999999877666655433 35678888663
No 207
>PRK06526 transposase; Provisional
Probab=95.94 E-value=0.031 Score=62.66 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=27.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
+++++.+|+|+|||..+.....+.... +.+++|+...
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~--g~~v~f~t~~ 135 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQA--GHRVLFATAA 135 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHC--CCchhhhhHH
Confidence 689999999999999888777666542 4456665443
No 208
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.94 E-value=0.014 Score=66.69 Aligned_cols=120 Identities=16% Similarity=0.068 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhC--CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEe
Q 037446 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMT 188 (1165)
Q Consensus 111 r~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~--~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~ 188 (1165)
.+-|.+++.. ..++++|.|..|||||.+.+.-+..++... +..++|+|++|+..+......+...++.....
T Consensus 2 ~~eQ~~~i~~-~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~----- 75 (315)
T PF00580_consen 2 TDEQRRIIRS-TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQE----- 75 (315)
T ss_dssp -HHHHHHHHS--SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC-----
T ss_pred CHHHHHHHhC-CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccc-----
Confidence 3458888887 678999999999999999888887777654 45689999999999999999988865421000
Q ss_pred CCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCC--CCccEEEEcccc
Q 037446 189 GQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM--KYLVCLVIDEAH 236 (1165)
Q Consensus 189 G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l--~~~~lVVIDEAH 236 (1165)
.......+........+.|.|...+...+-+..... -.-.+-++|+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 000001111112235788999988876543322111 123456777766
No 209
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.92 E-value=0.0094 Score=76.74 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=91.5
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHH
Q 037446 439 AQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF 518 (1165)
Q Consensus 439 ~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~F 518 (1165)
....|+..+...+... + .+....++|||+......+.+...+...+ +.....-+ .+.-...+..|
T Consensus 1200 dfg~kI~~v~~~il~i-K-~k~~qekvIvfsqws~~ldV~e~~~~~N~--I~~~~~~~-----------t~d~~dc~~~f 1264 (1394)
T KOG0298|consen 1200 DFGTKIDSVVIAILYI-K-FKNEQEKVIVFSQWSVVLDVKELRYLMNL--IKKQLDGE-----------TEDFDDCIICF 1264 (1394)
T ss_pred hhccCchhHHHHHHHH-h-ccCcCceEEEEEehHHHHHHHHHHHHhhh--hHhhhccC-----------Ccchhhhhhhc
Confidence 3466777775555432 2 34456899999999998888888887665 44332221 23345567777
Q ss_pred hcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCccceecC
Q 037446 519 RAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFK 576 (1165)
Q Consensus 519 r~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv~v~~ 576 (1165)
++ --.+|+-+..++-|+|+-.+.+|++.+|-.++..-.|++||++|+||.+-++++.
T Consensus 1265 k~-I~clll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~ 1321 (1394)
T KOG0298|consen 1265 KS-IDCLLLFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHR 1321 (1394)
T ss_pred cc-ceEEEEEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhh
Confidence 76 2235677899999999999999999999999999999999999999998777663
No 210
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.89 E-value=0.14 Score=61.74 Aligned_cols=118 Identities=22% Similarity=0.304 Sum_probs=66.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec-C-hhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP-S-RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP-t-r~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~ 202 (1165)
.+++.+|||+|||.+.+..+..+.....+.++.+|.- + +.-+..+...+.+.++.+ +
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp---~------------------ 281 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIP---V------------------ 281 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCc---e------------------
Confidence 4778899999999887776655531223345555442 2 222222333333333432 1
Q ss_pred ccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHc-C-CCCCeEEEEccCCCC
Q 037446 203 KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS-V-PVQLRILALTATPGS 269 (1165)
Q Consensus 203 ~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~-~-~~~~riL~LSATP~~ 269 (1165)
..+.++..+...+.. +.++++||||-+-+...+......+..++. . .....+|.++||...
T Consensus 282 --~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~ 344 (424)
T PRK05703 282 --EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY 344 (424)
T ss_pred --EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH
Confidence 112344445444432 336899999999876654445556666665 2 222457889999754
No 211
>PHA02533 17 large terminase protein; Provisional
Probab=95.84 E-value=0.089 Score=65.03 Aligned_cols=126 Identities=14% Similarity=0.175 Sum_probs=77.4
Q ss_pred CCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCC-CCce
Q 037446 106 VNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGI-PQEW 183 (1165)
Q Consensus 106 t~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~-~~~~ 183 (1165)
.+++|++||.+++..+.. +-.++..+=..|||.+.+..++......++..+++++|+..-+....+.++..... |...
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFL 135 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHh
Confidence 468899999999988753 55678899999999988765554444456679999999988888877777655432 2110
Q ss_pred EEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccC
Q 037446 184 TIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 184 v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
...+.... .....+..+..|.+.|-.. ....-....++|+||+|.+..
T Consensus 136 ~~~i~~~~--~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 136 QPGIVEWN--KGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred hcceeecC--ccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC
Confidence 00000000 0011122345554444221 111223467899999998764
No 212
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.67 E-value=0.12 Score=51.05 Aligned_cols=37 Identities=30% Similarity=0.493 Sum_probs=24.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
+.+++.+++|+|||..+...+.... .....++++...
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~ 56 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNAS 56 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehh
Confidence 5689999999999987666554442 223455555544
No 213
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.64 E-value=0.023 Score=55.57 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=27.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPL 165 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~L 165 (1165)
+.+++.+++|+|||..+...+...... ...++++.+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDIL 42 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEcc
Confidence 468999999999999877666554211 1257777777433
No 214
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.50 E-value=0.53 Score=57.30 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=33.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEAC 173 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~ 173 (1165)
+.+++.+++|+|||..+.....+.....++.+++++... .+..+....+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~-~~~~~~~~~~ 197 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE-KFTNDFVNAL 197 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH-HHHHHHHHHH
Confidence 358899999999999887766666555555667777544 5655443333
No 215
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.50 E-value=0.19 Score=59.17 Aligned_cols=129 Identities=21% Similarity=0.305 Sum_probs=83.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCe-EEEEecCh-hHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGK-IVFAAPSR-PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK 201 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~r-vLILvPtr-~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~ 201 (1165)
+.+.+.+|||.|||-+.+-.+..+.......+ .||-.-|- -=|..|.+.+.++++.|
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp--------------------- 262 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP--------------------- 262 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCc---------------------
Confidence 34678899999999988877766653333344 55555543 33445566666666765
Q ss_pred CccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCC-CCCeEEEEccCCCCChHHHHHHHHh
Q 037446 202 TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP-VQLRILALTATPGSKQQTIQHIIDN 280 (1165)
Q Consensus 202 ~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~-~~~riL~LSATP~~~~~~l~~Li~~ 280 (1165)
=.++-+|.-|...+. .+.++++|.||=+-+-.-+..+...++++.... .-...|.||||-.. +++..++..
T Consensus 263 --~~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~ 334 (407)
T COG1419 263 --LEVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQ 334 (407)
T ss_pred --eEEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHH
Confidence 124567777776655 567789999998877655545666777777543 33457899999754 345555544
Q ss_pred h
Q 037446 281 L 281 (1165)
Q Consensus 281 L 281 (1165)
+
T Consensus 335 f 335 (407)
T COG1419 335 F 335 (407)
T ss_pred h
Confidence 3
No 216
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.12 Score=61.04 Aligned_cols=123 Identities=21% Similarity=0.274 Sum_probs=66.1
Q ss_pred CCCCCChHHHHHHHHHhhc--------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEE-ecChhHHHHHHHHHHH
Q 037446 105 PVNVPVRDYQFAITKTALF--------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA-APSRPLVMQQIEACHN 175 (1165)
Q Consensus 105 Pt~IQlr~yQ~eal~~ll~--------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLIL-vPtr~La~Q~~~e~~k 175 (1165)
|-.++.|.-|.+-+...+. .|+++.++||+|||.+.-..+.++.......-+++| |....=..|....+-.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 3345666666655554443 579999999999999988877776544333323322 2222223344444444
Q ss_pred HhC-CCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHc
Q 037446 176 IVG-IPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS 253 (1165)
Q Consensus 176 l~g-~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~ 253 (1165)
.++ .| .+|...... .+.+.+.+.. ....-+||+||++.+....+ ..+-.|.+
T Consensus 96 ~~~~~p------~~g~~~~~~--------------~~~l~~~~~~----~~~~~IvvLDEid~L~~~~~--~~LY~L~r 148 (366)
T COG1474 96 KLGKVP------LTGDSSLEI--------------LKRLYDNLSK----KGKTVIVILDEVDALVDKDG--EVLYSLLR 148 (366)
T ss_pred HcCCCC------CCCCchHHH--------------HHHHHHHHHh----cCCeEEEEEcchhhhccccc--hHHHHHHh
Confidence 332 21 112222111 1233333332 34455789999999988533 45555554
No 217
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.46 E-value=0.16 Score=59.89 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=65.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec-C-h-hHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP-S-R-PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK 201 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP-t-r-~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~ 201 (1165)
.+++.++||+|||...+..+..+.. .+.++.++.- + | ..+.||.. +....+.+ +
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~--~GkkVglI~aDt~RiaAvEQLk~-yae~lgip---v----------------- 299 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHG--KKKTVGFITTDHSRIGTVQQLQD-YVKTIGFE---V----------------- 299 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH--cCCcEEEEecCCcchHHHHHHHH-HhhhcCCc---E-----------------
Confidence 5678999999999998887766542 2345554443 2 2 33444443 22223322 1
Q ss_pred CccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcC-CCCCeEEEEccCCCC
Q 037446 202 TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV-PVQLRILALTATPGS 269 (1165)
Q Consensus 202 ~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~-~~~~riL~LSATP~~ 269 (1165)
+...+|..+.+.+..-. ...++++|+||-+=+...+......+..++.. .+...+|.++||...
T Consensus 300 ---~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 300 ---IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS 364 (436)
T ss_pred ---EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh
Confidence 11235666665554211 11258999999998876543333344444432 233345668888643
No 218
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.42 E-value=0.064 Score=54.62 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHhcCC-ceEEEEcccccccccccC--CCEEEEeccCC
Q 037446 506 QSQKVQQAVLEKFRAGG-YNVIVATSIGEEGLDIME--VDLVICFDANV 551 (1165)
Q Consensus 506 ms~~eR~~il~~Fr~g~-~~VLVATda~~eGLDIp~--vd~VI~~D~p~ 551 (1165)
....+...++++|+... ..||++|.-+.+|||+|+ +++||....|.
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 44556788999998654 379999988999999998 67899888774
No 219
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.36 E-value=0.12 Score=66.54 Aligned_cols=101 Identities=21% Similarity=0.141 Sum_probs=62.7
Q ss_pred CCChHHHHHHHHHhhc--CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEE
Q 037446 108 VPVRDYQFAITKTALF--SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTI 185 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~--rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~ 185 (1165)
+.+.+-|.+++..+.. +-++|.++.|+|||.+.-.. ...+.. .+.++++++||---+.. +..-.|.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i-~~~~~~-~g~~V~~~ApTg~Aa~~----L~~~~g~~a---- 420 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAA-REAWEA-AGYRVIGAALSGKAAEG----LQAESGIES---- 420 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHH-HHHHHh-CCCeEEEEeCcHHHHHH----HHhccCCce----
Confidence 4678889999998876 45788999999999875443 333332 35689999999433322 222233321
Q ss_pred EEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccC
Q 037446 186 DMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 186 ~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
.|...+...+....-.+...++||||||-.+..
T Consensus 421 ----------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~ 453 (744)
T TIGR02768 421 ----------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGS 453 (744)
T ss_pred ----------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCH
Confidence 122222211122223356789999999998865
No 220
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.30 E-value=0.14 Score=55.16 Aligned_cols=120 Identities=21% Similarity=0.240 Sum_probs=70.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe-c-ChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA-P-SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv-P-tr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
+++.+|||+|||-+.+-.+..+... +.++.+++ - .|.=+.+|.+.+-+.++.+ +....-...
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp---~~~~~~~~~----------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP---FYVARTESD----------- 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE---EEESSTTSC-----------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc---cchhhcchh-----------
Confidence 5788999999999988888777655 44554444 3 3455666777777777754 211111111
Q ss_pred cEEEEcHHH-HHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcC-CCCCeEEEEccCCCC
Q 037446 204 RVFFVTPQV-LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV-PVQLRILALTATPGS 269 (1165)
Q Consensus 204 dIlVaTpq~-L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~-~~~~riL~LSATP~~ 269 (1165)
|.. +...+. ....+++++|+||-+-+...+......++.+... .....+|.++||...
T Consensus 68 ------~~~~~~~~l~--~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~ 127 (196)
T PF00448_consen 68 ------PAEIAREALE--KFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ 127 (196)
T ss_dssp ------HHHHHHHHHH--HHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG
T ss_pred ------hHHHHHHHHH--HHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh
Confidence 111 222222 1233568999999998876543444555555543 344567899999854
No 221
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.29 E-value=0.21 Score=59.47 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=24.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEE
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLIL 159 (1165)
.+++|.+++|+|||.+.-..+.++....+.-.+++|
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 569999999999999876666554333223345554
No 222
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.29 E-value=0.5 Score=58.86 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=31.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEAC 173 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~ 173 (1165)
.++|.+++|+|||........+.....++.+++++.-. .++.+....+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae-ef~~el~~al 363 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE-EFTNEFINSI 363 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH-HHHHHHHHHH
Confidence 48899999999998766655554444455677776654 6665544433
No 223
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.11 E-value=0.18 Score=59.32 Aligned_cols=43 Identities=33% Similarity=0.352 Sum_probs=28.8
Q ss_pred CCCCCChHHHHHHHHHhhc--------CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 105 PVNVPVRDYQFAITKTALF--------SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 105 Pt~IQlr~yQ~eal~~ll~--------rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
|..+.-|.-|.+.+...+. .+++|.+++|+|||.+.-..+.++
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3445556666655444432 479999999999998876655543
No 224
>PLN03025 replication factor C subunit; Provisional
Probab=95.03 E-value=0.12 Score=59.92 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=19.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.++|+.+|.|+|||..+...+.++
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999998877766554
No 225
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.01 E-value=0.077 Score=67.12 Aligned_cols=121 Identities=17% Similarity=0.106 Sum_probs=79.7
Q ss_pred CChHHHHHHHHHhhc--CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEE
Q 037446 109 PVRDYQFAITKTALF--SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID 186 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~--rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~ 186 (1165)
.|+.-|..|+..++. .-.||.+=+|+|||-+....+.-++. .++++|+.+=|..-++++.-.+... ++. . .
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~--~gkkVLLtsyThsAVDNILiKL~~~-~i~---~-l 741 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA--LGKKVLLTSYTHSAVDNILIKLKGF-GIY---I-L 741 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH--cCCeEEEEehhhHHHHHHHHHHhcc-Ccc---e-e
Confidence 466668888887776 45788899999999987777765554 4678999999988888887777653 332 1 1
Q ss_pred EeCCCC-------------------hHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccC
Q 037446 187 MTGQIS-------------------PTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 187 l~G~~~-------------------~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
-.|... ...-..+.+...||.+|-=-+.. ..+..+.|||+|||||-.+.-
T Consensus 742 RLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~----plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 742 RLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH----PLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred ecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc----hhhhccccCEEEEcccccccc
Confidence 112211 11112334556777776533332 233456799999999998875
No 226
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.00 E-value=0.05 Score=62.37 Aligned_cols=57 Identities=21% Similarity=0.106 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHhhcC---CeEEEcCCCchHHHHHHHHHHHHH-HhCCCCeEEEEecChhHH
Q 037446 110 VRDYQFAITKTALFS---NTLVALPTGLGKTLIAAVVIYNFF-RWFPDGKIVFAAPSRPLV 166 (1165)
Q Consensus 110 lr~yQ~eal~~ll~r---nvIl~a~TGsGKTL~a~lpil~~L-~~~~~~rvLILvPtr~La 166 (1165)
.+.+|.-++..++.. =+.+.++-|||||+.|+.+.++.. ....-.+++|-=|+..+-
T Consensus 229 rn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 229 RNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred ccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 334588999988873 367889999999999888765543 444556788888886554
No 227
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.98 E-value=0.076 Score=54.15 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCc---eEEEEccc--ccccccccC--CCEEEEeccCC
Q 037446 510 VQQAVLEKFRAGGY---NVIVATSI--GEEGLDIME--VDLVICFDANV 551 (1165)
Q Consensus 510 eR~~il~~Fr~g~~---~VLVATda--~~eGLDIp~--vd~VI~~D~p~ 551 (1165)
+..+++++|++..- .||+++.- +.||||+|+ +++||....|.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 45788899986433 68888877 999999998 78999988873
No 228
>PRK08181 transposase; Validated
Probab=94.84 E-value=0.12 Score=58.48 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=29.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ 169 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~ 169 (1165)
+++++.+++|+|||..+.....+.+.. +.+++|+. ...|+.+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~-~~~L~~~l 149 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR-TTDLVQKL 149 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee-HHHHHHHH
Confidence 689999999999998877766655442 34565554 33555544
No 229
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.80 E-value=0.13 Score=64.80 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=25.4
Q ss_pred CCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEc
Q 037446 225 KYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264 (1165)
Q Consensus 225 ~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LS 264 (1165)
.+++++||||+|.|... .+...++.|-..+...++|+.|
T Consensus 118 gr~KVIIIDEah~LT~~-A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH-AFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHH-HHHHHHHHHHhcCCCeEEEEEE
Confidence 46899999999999762 5555555554444454544443
No 230
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.16 Score=63.34 Aligned_cols=122 Identities=20% Similarity=0.236 Sum_probs=59.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCC-eEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDG-KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~-rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
-.|+.++.|+|||.++.+.+..+.-..+.+ ..+-.-| + .....|+.+.......++.+.+...
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P----C-G~C~sC~~I~aG~hpDviEIdAas~----------- 103 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP----C-GQCRACTEIDAGRFVDYIEMDAASN----------- 103 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC----C-cccHHHHHHHcCCCCcceEeccccc-----------
Confidence 358999999999999888776654221110 0000001 1 1123333332211122333333211
Q ss_pred cEEEEcHHHHHHHHHcCc--cCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCC
Q 037446 204 RVFFVTPQVLEKDIQSGT--CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267 (1165)
Q Consensus 204 dIlVaTpq~L~~~l~~~~--~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP 267 (1165)
...+.+..++..-. -...+++++||||+|+|... .+...++.|-.-+....+|+.|--+
T Consensus 104 ----~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~-AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 104 ----RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH-AFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred ----CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH-HHHHHHHhhccCCCCceEEEEeCCh
Confidence 01222333322211 12356899999999999763 5554555444444555555554433
No 231
>PRK14974 cell division protein FtsY; Provisional
Probab=94.69 E-value=0.5 Score=55.13 Aligned_cols=120 Identities=19% Similarity=0.189 Sum_probs=66.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC---hhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCC
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS---RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt---r~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~ 202 (1165)
+++.+++|+|||.+....+..+. . .+.+++++..- ..-..||..... .+|.+.. ....|.
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~-~-~g~~V~li~~Dt~R~~a~eqL~~~a~-~lgv~v~--~~~~g~------------ 205 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLK-K-NGFSVVIAAGDTFRAGAIEQLEEHAE-RLGVKVI--KHKYGA------------ 205 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-H-cCCeEEEecCCcCcHHHHHHHHHHHH-HcCCcee--cccCCC------------
Confidence 66789999999998777665443 2 33466665532 344455544333 3554311 011111
Q ss_pred ccEEEEcHHH-HHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCC
Q 037446 203 KRVFFVTPQV-LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSK 270 (1165)
Q Consensus 203 ~dIlVaTpq~-L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~ 270 (1165)
.|.. +.+.+.. ....+.++|+||.|.++..+..+...++.+.. ..+...++.++||..+.
T Consensus 206 ------dp~~v~~~ai~~--~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 206 ------DPAAVAYDAIEH--AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred ------CHHHHHHHHHHH--HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh
Confidence 1111 1121111 11245789999999999754455555666654 34455678889987543
No 232
>PRK08727 hypothetical protein; Validated
Probab=94.68 E-value=0.24 Score=54.80 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=23.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
.+++.+++|+|||..+.....+... .+.+++|+.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~--~~~~~~y~~ 76 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQ--AGRSSAYLP 76 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEe
Confidence 4899999999999876665554433 234666654
No 233
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.65 E-value=0.088 Score=65.55 Aligned_cols=162 Identities=13% Similarity=0.077 Sum_probs=94.0
Q ss_pred CCChHHHHHHHHHhhc---CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHH-HHHHHHhCCCCce
Q 037446 108 VPVRDYQFAITKTALF---SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI-EACHNIVGIPQEW 183 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~---rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~-~e~~kl~g~~~~~ 183 (1165)
....+||.+++..+.. +.+++..++-+|||.+.+..+...+... ...+|++.||..++.++. ..|..++......
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~-P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l 93 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD-PGPMLYVQPTDDAAKDFSKERLDPMIRASPVL 93 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC-CCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHH
Confidence 3778999999999987 6799999999999997666555444443 478999999999999987 4455544321111
Q ss_pred EEEEeC-----CCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCc----c-chHHHHHHHHc
Q 037446 184 TIDMTG-----QISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN----Y-AYCTAIRELMS 253 (1165)
Q Consensus 184 v~~l~G-----~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~----~-~~~~~l~~L~~ 253 (1165)
...+.. +.+......+ .+..+.++.-..-. .+.-..+++|++||.+.+-.. . .......+...
T Consensus 94 ~~~~~~~~~~~~~~t~~~k~f-~gg~l~~~ga~S~~------~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~t 166 (557)
T PF05876_consen 94 RRKLSPSKSRDSGNTILYKRF-PGGFLYLVGANSPS------NLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKT 166 (557)
T ss_pred HHHhCchhhcccCCchhheec-CCCEEEEEeCCCCc------ccccCCcCEEEEechhhccccCccCCCHHHHHHHHHhh
Confidence 111111 1111111122 24445554332221 223455889999999999431 1 23222233333
Q ss_pred CCCCCeEEEEccCCCCC-hHHHHHHH
Q 037446 254 VPVQLRILALTATPGSK-QQTIQHII 278 (1165)
Q Consensus 254 ~~~~~riL~LSATP~~~-~~~l~~Li 278 (1165)
+ ...+.+++..||... ...|..++
T Consensus 167 f-~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 167 F-GSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred h-ccCcEEEEeCCCCCCCCCHHHHHH
Confidence 3 223447777888654 23444444
No 234
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.58 E-value=0.09 Score=64.46 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhc----------CCeEEEcCCCchHHHHHHHHHHHHHHh--CCCCeEEEEecChhHHHHHHHHHHHHhCC
Q 037446 112 DYQFAITKTALF----------SNTLVALPTGLGKTLIAAVVIYNFFRW--FPDGKIVFAAPSRPLVMQQIEACHNIVGI 179 (1165)
Q Consensus 112 ~yQ~eal~~ll~----------rnvIl~a~TGsGKTL~a~lpil~~L~~--~~~~rvLILvPtr~La~Q~~~e~~kl~g~ 179 (1165)
|||+.++..+.+ +.+++.-+=|-|||......++..+.. ..+..++++++++.-+......+..++..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 578888888775 358889999999999877766554432 23457999999999999999988887653
No 235
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.50 E-value=0.22 Score=60.47 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=33.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACH 174 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~ 174 (1165)
+.+++.+++|+|||.........+....++.+++++... .+.......+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~-~f~~~~~~~l~ 191 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD-EFARKAVDILQ 191 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH-HHHHHHHHHHH
Confidence 458899999999997765444333334556677776664 66666555543
No 236
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.50 E-value=0.3 Score=54.47 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=56.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
..+++.+++|+|||..+...+.++... +..++++. . .++...++..+.. .+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it-~----~~l~~~l~~~~~~---------~~------------- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT-V----ADIMSAMKDTFSN---------SE------------- 150 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE-H----HHHHHHHHHHHhh---------cc-------------
Confidence 368999999999999887776665442 34566653 3 2344444332110 00
Q ss_pred cEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHc--CCCCCeEEEEcc
Q 037446 204 RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS--VPVQLRILALTA 265 (1165)
Q Consensus 204 dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~--~~~~~riL~LSA 265 (1165)
.+.+.+... +..+++|||||++.......-...+-.+.. +.....++..|-
T Consensus 151 ----~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 151 ----TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred ----ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 112223221 346899999999987643122234444543 333445555444
No 237
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.49 E-value=0.2 Score=65.74 Aligned_cols=55 Identities=16% Similarity=-0.025 Sum_probs=40.9
Q ss_pred CCCChHHHHHHHHHhhc-C-CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecCh
Q 037446 107 NVPVRDYQFAITKTALF-S-NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~-r-nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr 163 (1165)
.+.|.+-|.+++..+.. + -++|.+..|+|||.+. -.+...+.. .+.+++.++||-
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~-~G~~V~~~ApTG 400 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEA-AGYEVRGAALSG 400 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHH-cCCeEEEecCcH
Confidence 35688889999998887 3 4788999999999863 334444332 356899999994
No 238
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.45 E-value=0.19 Score=60.01 Aligned_cols=137 Identities=14% Similarity=0.050 Sum_probs=79.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhC-CCCeEEEEecChh-HHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcC-C
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIVFAAPSRP-LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK-T 202 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~-~~~rvLILvPtr~-La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~-~ 202 (1165)
.++.+..|||||...+..++..+... ++.++|++.++.. |.......+...+...+.....-....+. .-.+.. +
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i~~~~~g 81 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EIKILNTG 81 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EEEecCCC
Confidence 57789999999999888777766664 6678999999977 55556666665433211111000000000 001112 3
Q ss_pred ccEEEEcH-HHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCCCCCh
Q 037446 203 KRVFFVTP-QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQ 271 (1165)
Q Consensus 203 ~dIlVaTp-q~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP~~~~ 271 (1165)
..|+|..- +...+. . ....++++.+|||..+... .+...+.+++. +.....+.+|.||....
T Consensus 82 ~~i~f~g~~d~~~~i-k----~~~~~~~~~idEa~~~~~~-~~~~l~~rlr~-~~~~~~i~~t~NP~~~~ 144 (396)
T TIGR01547 82 KKFIFKGLNDKPNKL-K----SGAGIAIIWFEEASQLTFE-DIKELIPRLRE-TGGKKFIIFSSNPESPL 144 (396)
T ss_pred eEEEeecccCChhHh-h----CcceeeeehhhhhhhcCHH-HHHHHHHHhhc-cCCccEEEEEcCcCCCc
Confidence 45666443 222211 1 1233689999999999653 56666655543 22222488999997643
No 239
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.41 E-value=0.16 Score=56.17 Aligned_cols=36 Identities=6% Similarity=0.075 Sum_probs=24.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP 161 (1165)
..+++.+|+|+|||-.+.....+... .+.+++|+.-
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~--~~~~v~y~~~ 81 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ--RGRAVGYVPL 81 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEEH
Confidence 46899999999999876655544432 2445666543
No 240
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.32 E-value=0.25 Score=54.20 Aligned_cols=106 Identities=16% Similarity=0.289 Sum_probs=60.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCcc
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~d 204 (1165)
-++|.+++|+|||-......-+.....++.+++++... +........+.. +
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~--~-------------------------- 86 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD--G-------------------------- 86 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT--T--------------------------
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc--c--------------------------
Confidence 37899999999999755544445455667788887765 444443333332 0
Q ss_pred EEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHc--CCCCCeEEEEccCCCCC
Q 037446 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS--VPVQLRILALTATPGSK 270 (1165)
Q Consensus 205 IlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~--~~~~~riL~LSATP~~~ 270 (1165)
....+.. .+...++|+||..|.+.+.......+-.+.+ .....++|+.|..++..
T Consensus 87 ----~~~~~~~-------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 87 ----EIEEFKD-------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp ----SHHHHHH-------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred ----cchhhhh-------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 1112222 2345899999999999875333333333332 12345666666555443
No 241
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.20 E-value=0.34 Score=62.42 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=24.7
Q ss_pred CCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEE
Q 037446 225 KYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILAL 263 (1165)
Q Consensus 225 ~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~L 263 (1165)
.+++++||||||+|... .+...++.|-..+...++|+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE
Confidence 46889999999999752 444444444444555555554
No 242
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.16 E-value=0.18 Score=56.78 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=30.1
Q ss_pred CCCCccEEEEcccccccCccchHHHHHHHH-cCCCCCeEEEEccCCCC
Q 037446 223 LMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLRILALTATPGS 269 (1165)
Q Consensus 223 ~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~-~~~~~~riL~LSATP~~ 269 (1165)
....++.||+||||.|.. .-+..+++.+ +.....++++.+--+.+
T Consensus 126 ~~~~fKiiIlDEcdsmts--daq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTS--DAQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCCcceEEEEechhhhhH--HHHHHHHHHHhccccceEEEEEcCChhh
Confidence 455689999999999986 3333444444 45566677777666543
No 243
>PRK12377 putative replication protein; Provisional
Probab=94.16 E-value=0.35 Score=54.04 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=30.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEA 172 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e 172 (1165)
.++++.+++|+|||..+...+..++.. +..+++ ++..+|+.+....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~-i~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIV-VTVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEE-EEHHHHHHHHHHH
Confidence 578999999999999877776666532 334544 4444666655443
No 244
>PRK06893 DNA replication initiation factor; Validated
Probab=94.14 E-value=0.14 Score=56.38 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=23.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
.+++.+++|+|||..+...+.+.... +.+++|+.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~ 74 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIP 74 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEee
Confidence 36899999999998776666555443 33555544
No 245
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.08 E-value=0.2 Score=52.21 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=59.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCcc
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~d 204 (1165)
..|+.++.|+||+..+...+...+-...... .|-. ...++.+.......+..+...... ..
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~---~c~~-------c~~c~~~~~~~~~d~~~~~~~~~~---------~~ 81 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPNED---PCGE-------CRSCRRIEEGNHPDFIIIKPDKKK---------KS 81 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT-----SS-------SHHHHHHHTT-CTTEEEEETTTSS---------SS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCC---CCCC-------CHHHHHHHhccCcceEEEeccccc---------ch
Confidence 4799999999999988887777654433322 2222 122222221111122222222110 01
Q ss_pred EEEEcHHHHHHHHHc---CccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCCC
Q 037446 205 VFFVTPQVLEKDIQS---GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPG 268 (1165)
Q Consensus 205 IlVaTpq~L~~~l~~---~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP~ 268 (1165)
| ..+.+...... ... ...++++||||||.|... .....++.|-..+....++++|-.+.
T Consensus 82 i---~i~~ir~i~~~~~~~~~-~~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 82 I---KIDQIREIIEFLSLSPS-EGKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp B---SHHHHHHHHHHCTSS-T-TSSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred h---hHHHHHHHHHHHHHHHh-cCCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 1 11333333322 221 246899999999999863 44444444445556666666665553
No 246
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.07 E-value=0.45 Score=55.37 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHhh---------cCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHH
Q 037446 109 PVRDYQFAITKTAL---------FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ 169 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll---------~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~ 169 (1165)
.++.....++..+. ..++++.++||+|||..+...+.+++.. +..|+++. ...|..+.
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t-~~~l~~~l 226 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRT-ADELIEIL 226 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEE-HHHHHHHH
Confidence 55666555555333 1689999999999999887777666543 34566554 33555444
No 247
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.04 E-value=0.29 Score=49.68 Aligned_cols=39 Identities=33% Similarity=0.434 Sum_probs=28.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLV 166 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La 166 (1165)
++|.+++|+|||..+...+..... .+++++++.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 578999999999988777666533 456788877764443
No 248
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.02 E-value=0.22 Score=58.02 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEE
Q 037446 111 RDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTI 185 (1165)
Q Consensus 111 r~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~ 185 (1165)
+|||......+.. +-.|+.++.|.|||..+...+..++-..+.+-. -| .....++.+.....-.+.
T Consensus 5 yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~--~C-------g~C~sC~~~~~g~HPD~~ 75 (328)
T PRK05707 5 YPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGG--AC-------GSCKGCQLLRAGSHPDNF 75 (328)
T ss_pred CCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCC--CC-------CCCHHHHHHhcCCCCCEE
Confidence 5566666666654 347889999999999887777665432211100 01 122333333221111111
Q ss_pred EEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcC--ccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEE
Q 037446 186 DMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG--TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILAL 263 (1165)
Q Consensus 186 ~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~--~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~L 263 (1165)
.+...... ..| ..+.+......- .-.....+++||||||+|... .....++.+-.-+....+|+.
T Consensus 76 ~i~~~~~~---------~~i---~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~-aaNaLLK~LEEPp~~~~fiL~ 142 (328)
T PRK05707 76 VLEPEEAD---------KTI---KVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRN-AANALLKSLEEPSGDTVLLLI 142 (328)
T ss_pred EEeccCCC---------CCC---CHHHHHHHHHHHhhccccCCCeEEEECChhhCCHH-HHHHHHHHHhCCCCCeEEEEE
Confidence 22110000 000 112333322211 112356889999999999863 444444544444445555555
Q ss_pred ccCCC
Q 037446 264 TATPG 268 (1165)
Q Consensus 264 SATP~ 268 (1165)
|..|.
T Consensus 143 t~~~~ 147 (328)
T PRK05707 143 SHQPS 147 (328)
T ss_pred ECChh
Confidence 54453
No 249
>PRK05642 DNA replication initiation factor; Validated
Probab=94.00 E-value=0.15 Score=56.53 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=23.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP 161 (1165)
+.+++.+++|+|||..+.....+... .+.+++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~--~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ--RGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh--CCCcEEEeeH
Confidence 46789999999999875544433322 2456766554
No 250
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.91 E-value=0.32 Score=58.95 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=31.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ 169 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~ 169 (1165)
+.+++.+++|+|||..+.....++....++.+++++... .+..+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~-~f~~~~ 175 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE-KFLNDL 175 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH-HHHHHH
Confidence 358999999999999877666665555556678887654 444333
No 251
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.86 E-value=0.61 Score=56.74 Aligned_cols=153 Identities=15% Similarity=0.110 Sum_probs=90.1
Q ss_pred CCCCCCChHHHHHHHHHhhc-----------CCeEEEcCCCchHHHHHHHHHHHH--HHhCCCCeEEEEecChhHHHHHH
Q 037446 104 YPVNVPVRDYQFAITKTALF-----------SNTLVALPTGLGKTLIAAVVIYNF--FRWFPDGKIVFAAPSRPLVMQQI 170 (1165)
Q Consensus 104 ~Pt~IQlr~yQ~eal~~ll~-----------rnvIl~a~TGsGKTL~a~lpil~~--L~~~~~~rvLILvPtr~La~Q~~ 170 (1165)
.-+++.+-+||.-++..+.+ +-++|..+-|-|||..++..++.. +.+..+..+.|++|+.+-+.+..
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhh
Confidence 33456788999999999996 237899999999998776544333 24445668999999988888777
Q ss_pred HHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHH---HHHHH--cCccCCCCccEEEEcccccccCccchH
Q 037446 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL---EKDIQ--SGTCLMKYLVCLVIDEAHRATGNYAYC 245 (1165)
Q Consensus 171 ~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L---~~~l~--~~~~~l~~~~lVVIDEAHrl~~~~~~~ 245 (1165)
..++....... +...+ ...+.+-..++.... ...+. .....-.+..+.||||.|......
T Consensus 136 ~~ar~mv~~~~----------~l~~~--~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--- 200 (546)
T COG4626 136 NPARDMVKRDD----------DLRDL--CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--- 200 (546)
T ss_pred HHHHHHHHhCc----------chhhh--hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH---
Confidence 77766543211 00000 001111111111111 11111 133344567799999999998731
Q ss_pred HHHHHHH---cCCCCCeEEEEccCCCCCh
Q 037446 246 TAIRELM---SVPVQLRILALTATPGSKQ 271 (1165)
Q Consensus 246 ~~l~~L~---~~~~~~riL~LSATP~~~~ 271 (1165)
..+..+. ...+..++++.|-...+..
T Consensus 201 ~~~~~~~~g~~ar~~~l~~~ITT~g~~~~ 229 (546)
T COG4626 201 DMYSEAKGGLGARPEGLVVYITTSGDPPA 229 (546)
T ss_pred HHHHHHHhhhccCcCceEEEEecCCCCCc
Confidence 3334433 3456667777776544443
No 252
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=93.83 E-value=0.69 Score=61.37 Aligned_cols=121 Identities=16% Similarity=0.110 Sum_probs=70.2
Q ss_pred CCChHHHHHHHHHhhc--CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEE
Q 037446 108 VPVRDYQFAITKTALF--SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTI 185 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~--rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~ 185 (1165)
+.|.+-|.+++..+.. +-++|.+.-|+|||.+.-. +...+.. .+.+++.++||---+ +.+.+..|++.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~-~~~~~e~-~G~~V~g~ApTgkAA----~~L~e~~Gi~a---- 449 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKA-AREAWEA-AGYRVVGGALAGKAA----EGLEKEAGIQS---- 449 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHH-HHHHHHH-cCCeEEEEcCcHHHH----HHHHHhhCCCe----
Confidence 5688889999998754 4478899999999987544 3333332 456899999994333 33444444431
Q ss_pred EEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEE
Q 037446 186 DMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILAL 263 (1165)
Q Consensus 186 ~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~L 263 (1165)
.|...+......+...+..-++||||||..+... .+...++.+.. ...++|++
T Consensus 450 ----------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~~-~m~~Ll~~~~~--~garvVLV 502 (1102)
T PRK13826 450 ----------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVASR-QMALFVEAVTR--AGAKLVLV 502 (1102)
T ss_pred ----------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCCHH-HHHHHHHHHHh--cCCEEEEE
Confidence 1122221111112234555679999999977542 33333333322 34555544
No 253
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.82 E-value=0.32 Score=58.36 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=29.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q 168 (1165)
.+++.+++|+|||..+.....+.....++.+++++... .+..+
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~-~~~~~ 180 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE-KFTND 180 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH-HHHHH
Confidence 47899999999999876666555554445677777543 44443
No 254
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.60 E-value=0.17 Score=59.81 Aligned_cols=107 Identities=20% Similarity=0.209 Sum_probs=63.5
Q ss_pred CChHHHHHHHHHhhc-------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHH--HHHHHHHhCC
Q 037446 109 PVRDYQFAITKTALF-------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ--IEACHNIVGI 179 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~--~~e~~kl~g~ 179 (1165)
+|..-|..++..+.. .++.|.++-|+|||+.+-..+.. ++ ..+..+++++||-.-|... -..++.++++
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~-~~-~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i 78 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDY-LR-SRGKKVLVTAPTGIAAFNIPGGRTIHSFFGI 78 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHH-hc-cccceEEEecchHHHHHhccCCcchHHhcCc
Confidence 355668888777722 67899999999999875544332 22 2456899999994444433 3556666665
Q ss_pred CCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccC
Q 037446 180 PQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 180 ~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
+-.. ... ..+ .+.... .....+...++|||||+-.+..
T Consensus 79 ~~~~-------~~~----------~~~--~~~~~~----~~~~~l~~~~~lIiDEism~~~ 116 (364)
T PF05970_consen 79 PINN-------NEK----------SQC--KISKNS----RLRERLRKADVLIIDEISMVSA 116 (364)
T ss_pred cccc-------ccc----------ccc--cccccc----hhhhhhhhheeeecccccchhH
Confidence 4110 000 000 111100 0112456789999999998876
No 255
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.59 E-value=0.16 Score=65.40 Aligned_cols=107 Identities=14% Similarity=0.091 Sum_probs=74.9
Q ss_pred CChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHh--CCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEE
Q 037446 109 PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW--FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID 186 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~--~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~ 186 (1165)
.|.+-|.+++... ...++|.|..|||||.+...-+.+++.. .++.++|+|+-|+..+....+.+.++++..
T Consensus 9 ~Ln~~Q~~av~~~-~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~------ 81 (721)
T PRK11773 9 SLNDKQREAVAAP-LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS------ 81 (721)
T ss_pred hcCHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC------
Confidence 3677798888754 3689999999999999988877777753 245689999999999999999998875521
Q ss_pred EeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccC-C-CCccEEEEccccc
Q 037446 187 MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL-M-KYLVCLVIDEAHR 237 (1165)
Q Consensus 187 l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~-l-~~~~lVVIDEAHr 237 (1165)
...+.|+|...+...+-+.... . -.-++-|+|+.+.
T Consensus 82 ---------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~ 119 (721)
T PRK11773 82 ---------------QGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQ 119 (721)
T ss_pred ---------------CCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHH
Confidence 1246789988877644321111 0 0123457777653
No 256
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.53 E-value=0.25 Score=63.16 Aligned_cols=107 Identities=16% Similarity=0.131 Sum_probs=74.6
Q ss_pred ChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHh--CCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEE
Q 037446 110 VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW--FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDM 187 (1165)
Q Consensus 110 lr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~--~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l 187 (1165)
|++-|.+++... ...++|.|..|||||.+...-+.+++.. .++.++|+|+-|+..+....+.+.+.++..
T Consensus 3 Ln~~Q~~av~~~-~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~------- 74 (672)
T PRK10919 3 LNPGQQQAVEFV-TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK------- 74 (672)
T ss_pred CCHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc-------
Confidence 567788888753 4689999999999999988888888753 245689999999999999988888875521
Q ss_pred eCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccC-CC-CccEEEEccccc
Q 037446 188 TGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL-MK-YLVCLVIDEAHR 237 (1165)
Q Consensus 188 ~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~-l~-~~~lVVIDEAHr 237 (1165)
....+.|+|...+...+-+.... +. .-++-|+|+.+.
T Consensus 75 -------------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~~ 113 (672)
T PRK10919 75 -------------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQ 113 (672)
T ss_pred -------------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHHH
Confidence 11256789998876544321111 00 123456777653
No 257
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.53 E-value=0.3 Score=60.22 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=26.4
Q ss_pred CCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEc
Q 037446 225 KYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264 (1165)
Q Consensus 225 ~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LS 264 (1165)
.+++++||||+|.+... .+...++.+-..+....+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~-a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH-SFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHH-HHHHHHHHHhccCCCeEEEEEE
Confidence 46899999999999763 5555555555555555655554
No 258
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.53 E-value=0.25 Score=61.95 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L 148 (1165)
.|+.++.|+|||.++.+.+..+.
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999888776654
No 259
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.49 E-value=0.17 Score=65.28 Aligned_cols=106 Identities=14% Similarity=0.100 Sum_probs=75.0
Q ss_pred CChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHh--CCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEE
Q 037446 109 PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW--FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID 186 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~--~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~ 186 (1165)
.|.+-|.+++... ...++|.|..|||||.+...-+.+++.. .+..++|+|+-|+..+....+.+.++++..
T Consensus 4 ~Ln~~Q~~av~~~-~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~------ 76 (715)
T TIGR01075 4 GLNDKQREAVAAP-PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTS------ 76 (715)
T ss_pred ccCHHHHHHHcCC-CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhccc------
Confidence 3677798888653 4689999999999999988888777753 245689999999999999999998875521
Q ss_pred EeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCc---cCCCCccEEEEccccc
Q 037446 187 MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT---CLMKYLVCLVIDEAHR 237 (1165)
Q Consensus 187 l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~---~~l~~~~lVVIDEAHr 237 (1165)
...+.|+|...+...+-+.. ..+. -++-|+|+.+.
T Consensus 77 ---------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 77 ---------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDDQ 114 (715)
T ss_pred ---------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 12567899887765433211 1111 13457777654
No 260
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.48 E-value=0.57 Score=59.82 Aligned_cols=124 Identities=19% Similarity=0.195 Sum_probs=71.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec-C-hhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP-S-RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP-t-r~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
+.+.++||+|||.+....+..+......+++.++.- + +.=+..+.+.+.+.++.+.
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv---------------------- 245 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV---------------------- 245 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc----------------------
Confidence 567899999999988777765533332335544433 2 1112233344444444431
Q ss_pred cEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHH
Q 037446 204 RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHII 278 (1165)
Q Consensus 204 dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li 278 (1165)
.++.+|+.+...+. .+.+.++|+||=+=+...+......+..+.. ..+...+|.++||... +.+.+++
T Consensus 246 -~~~~~~~~l~~al~----~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~--~~l~~i~ 314 (767)
T PRK14723 246 -HAVKDAADLRFALA----ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG--DTLNEVV 314 (767)
T ss_pred -cccCCHHHHHHHHH----HhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH--HHHHHHH
Confidence 12336666666555 2446789999999887654345555555553 2344567888999642 3344444
No 261
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.46 E-value=0.36 Score=62.60 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=58.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHh-C-CCCceEEEEeCCCChHHHHhhcCC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIV-G-IPQEWTIDMTGQISPTKRASFWKT 202 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~-g-~~~~~v~~l~G~~~~~~~~~l~~~ 202 (1165)
-.|+.++.|+|||.++.+.+..++-.. . ++.. .-.....|+.+. | .....+..+.+....
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~C~~-~-------~~~~-pCg~C~sC~~~~~g~~~~~dv~eidaas~~--------- 100 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLNCVE-G-------PTST-PCGECDSCVALAPGGPGSLDVTEIDAASHG--------- 100 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCccc-C-------CCCC-CCcccHHHHHHHcCCCCCCcEEEecccccC---------
Confidence 368999999999999888776654211 1 0100 001133344432 1 122334444432211
Q ss_pred ccEEEEcHHHHHHHHHcC--ccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEc
Q 037446 203 KRVFFVTPQVLEKDIQSG--TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264 (1165)
Q Consensus 203 ~dIlVaTpq~L~~~l~~~--~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LS 264 (1165)
..+.+..+...- .-...+++++||||+|+|... .+...++.|-..+....+|++|
T Consensus 101 ------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 101 ------GVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred ------CHHHHHHHHHHHHhchhcCCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 112222221110 112356899999999999862 4544444454555555555554
No 262
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.42 E-value=0.33 Score=56.33 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.+++.+|+|+|||..+...+...
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999877766554
No 263
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.41 E-value=0.39 Score=53.89 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=16.5
Q ss_pred CeEEEcCCCchHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpi 144 (1165)
.+++.++.|+|||..+...+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLL 64 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999998766554
No 264
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.38 E-value=0.52 Score=59.40 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=19.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.+|+.++.|+|||.++.+.+..+
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 47999999999999887776654
No 265
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.31 E-value=0.86 Score=54.39 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=62.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEE-ecC-hhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA-APS-RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLIL-vPt-r~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
+++.+++|+|||.++...+..+... .+.+++++ +-+ |..+..+.+......+.+. .
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~-~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~---~------------------ 283 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLH-MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPF---Y------------------ 283 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEecccchhhhHHHHHHHHHHhcCCCe---e------------------
Confidence 6688999999999988877655322 23344433 333 3334433343333334321 0
Q ss_pred cEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcC----CCCCeEEEEccCCCC
Q 037446 204 RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV----PVQLRILALTATPGS 269 (1165)
Q Consensus 204 dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~----~~~~riL~LSATP~~ 269 (1165)
.+..+..+...+. ..++++||||=+-+...+......+..+... .....+|.|+||-..
T Consensus 284 --~~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~ 346 (432)
T PRK12724 284 --PVKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY 346 (432)
T ss_pred --ehHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH
Confidence 0011223333222 2568999999877764333444444555442 122467899999865
No 266
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.28 E-value=0.32 Score=60.79 Aligned_cols=115 Identities=16% Similarity=0.154 Sum_probs=56.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCcc
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~d 204 (1165)
-+|+.+|.|+|||.++.+.+..+.- ...... .|- .....|+.+.......+..+.+....
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~LnC-~~~~~~---~pC-----g~C~sC~~I~~g~hpDviEIDAAs~~----------- 98 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLNC-ETGVTS---TPC-----EVCATCKAVNEGRFIDLIEIDAASRT----------- 98 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-CcCCCC---CCC-----ccCHHHHHHhcCCCCceEEecccccC-----------
Confidence 4599999999999988777665421 111000 011 12233444322222233334332111
Q ss_pred EEEEcHHHHHHHHHcCc--cCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEc
Q 037446 205 VFFVTPQVLEKDIQSGT--CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264 (1165)
Q Consensus 205 IlVaTpq~L~~~l~~~~--~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LS 264 (1165)
..+.+...+.... -...+++++||||+|++... .+...++.+-..+....+|+.|
T Consensus 99 ----~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 99 ----KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-SFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred ----CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-HHHHHHHHHhcCCCCcEEEEEE
Confidence 1122222222111 11245789999999999762 5544445444444445545433
No 267
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.14 E-value=0.38 Score=58.72 Aligned_cols=114 Identities=14% Similarity=0.199 Sum_probs=57.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
+..|+.++.|+|||.++-+.+..+.-.. + |+..-+ .....|..+.......+..+.+....
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~~-~-------~~~~pC-g~C~~C~~i~~~~~~Dv~eidaas~~---------- 96 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNCSN-G-------PTSDPC-GTCHNCISIKNSNHPDVIEIDAASNT---------- 96 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcCcC-C-------CCCCCc-cccHHHHHHhccCCCCEEEEecccCC----------
Confidence 4689999999999998877665542111 1 110111 11233333332223334454443211
Q ss_pred cEEEEcHHHHHHHHH---cCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEE
Q 037446 204 RVFFVTPQVLEKDIQ---SGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILAL 263 (1165)
Q Consensus 204 dIlVaTpq~L~~~l~---~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~L 263 (1165)
..+.+...+. ... ...+++++||||+|.+... .+...++.+-..+....+|+.
T Consensus 97 -----~vddIR~Iie~~~~~P-~~~~~KVvIIDEah~Ls~~-A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 97 -----SVDDIKVILENSCYLP-ISSKFKVYIIDEVHMLSNS-AFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred -----CHHHHHHHHHHHHhcc-ccCCceEEEEeChHhCCHH-HHHHHHHHHhCCCCCeEEEEE
Confidence 1122222221 111 2357899999999999762 454444444444444444443
No 268
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.13 E-value=0.24 Score=59.96 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.|+.+|.|+|||.++.+.+..+
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6999999999999888776654
No 269
>PRK08116 hypothetical protein; Validated
Probab=93.09 E-value=0.5 Score=53.46 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=29.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEA 172 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e 172 (1165)
.+++.+++|+|||..+...+.+++.. +..++++. ...|+..+...
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~-~~~ll~~i~~~ 160 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN-FPQLLNRIKST 160 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE-HHHHHHHHHHH
Confidence 38999999999999988766555443 34555554 44565544433
No 270
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.93 E-value=0.55 Score=54.39 Aligned_cols=141 Identities=14% Similarity=0.157 Sum_probs=68.2
Q ss_pred CChHHHHHHHHHhhc--------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHh--C
Q 037446 109 PVRDYQFAITKTALF--------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIV--G 178 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~--------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~--g 178 (1165)
.+++||..+...+.. +-.|+.++.|+||+..+...+..++-..+.. ++ ....++.+. .
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~-----~~-------~c~~c~~~~~g~ 71 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDP-----AA-------AQRTRQLIAAGT 71 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCC-----CC-------cchHHHHHhcCC
Confidence 355666666666553 2478999999999998877766655322111 11 011122221 2
Q ss_pred CCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCC
Q 037446 179 IPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL 258 (1165)
Q Consensus 179 ~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~ 258 (1165)
.|....+...-+..... ....|.|-..-.+...+.... .....+++|||+||.|... .....++.+-.-+...
T Consensus 72 HPD~~~i~~~p~~~~~k-----~~~~I~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~~ 144 (319)
T PRK08769 72 HPDLQLVSFIPNRTGDK-----LRTEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAINRA-ACNALLKTLEEPSPGR 144 (319)
T ss_pred CCCEEEEecCCCccccc-----ccccccHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCHH-HHHHHHHHhhCCCCCC
Confidence 33332221011000000 001222222222222222111 2346889999999999762 4444445444445555
Q ss_pred eEEEEccCCC
Q 037446 259 RILALTATPG 268 (1165)
Q Consensus 259 riL~LSATP~ 268 (1165)
.+|++|..+.
T Consensus 145 ~fiL~~~~~~ 154 (319)
T PRK08769 145 YLWLISAQPA 154 (319)
T ss_pred eEEEEECChh
Confidence 6666665554
No 271
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.84 E-value=0.46 Score=50.05 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=36.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNI 176 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl 176 (1165)
++|.+++|+|||..++-.+...+. .+.+++|+... +-..+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~--~g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA--RGEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH--CCCcEEEEECC-CCHHHHHHHHHHc
Confidence 689999999999988877776654 35678888765 6677777766654
No 272
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.75 E-value=0.3 Score=61.24 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=60.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
+..|+.++.|+|||.++.+.+..+....+.... -|+..-+ .+...|+.+.......+..+.....
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~---~~~~~~c-g~c~~C~~i~~g~h~Dv~e~~a~s~----------- 111 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILARALNYEGPDGDG---GPTIDLC-GVGEHCQAIMEGRHVDVLEMDAASH----------- 111 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhCcCCccccC---CCccccC-cccHHHHHHhcCCCCceEEeccccc-----------
Confidence 358999999999999988877665432211100 1221111 1234444443322222333322110
Q ss_pred cEEEEcHHHHHHH---HHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEc
Q 037446 204 RVFFVTPQVLEKD---IQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264 (1165)
Q Consensus 204 dIlVaTpq~L~~~---l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LS 264 (1165)
...+.+... +.... ...+.++|||||+|.+... .+...++.+-..+....+|+.|
T Consensus 112 ----~gvd~IReIie~~~~~P-~~a~~KVvIIDEad~Ls~~-a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 112 ----TGVDDIREIIESVRYRP-VSARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred ----CCHHHHHHHHHHHHhch-hcCCcEEEEEEChHhCCHH-HHHHHHHHHHhCCCCeEEEEEe
Confidence 112222222 22212 2456889999999999752 4544445544545555555544
No 273
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.74 E-value=0.52 Score=53.01 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=19.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.++++.+|+|+|||.++-..+..+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 368999999999999887766544
No 274
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.73 E-value=0.58 Score=58.95 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=25.5
Q ss_pred CCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEE
Q 037446 225 KYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILAL 263 (1165)
Q Consensus 225 ~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~L 263 (1165)
..++++||||+|+|... .+...++.+-.-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~-a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHH-HHHHHHHHHHcCCCCeEEEEe
Confidence 46889999999999763 555555555554455555554
No 275
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.72 E-value=0.51 Score=58.04 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=20.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L 148 (1165)
+..|+.+|.|+|||.++-+.+..+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3589999999999999888776653
No 276
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.65 E-value=0.21 Score=54.06 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=23.8
Q ss_pred cCCCCccEEEEcccccccCccchHHHHHHHHcC
Q 037446 222 CLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV 254 (1165)
Q Consensus 222 ~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~ 254 (1165)
++..+.+.||+|||+.|.. +-.+.+++-+.+
T Consensus 109 lp~grhKIiILDEADSMT~--gAQQAlRRtMEi 139 (333)
T KOG0991|consen 109 LPPGRHKIIILDEADSMTA--GAQQALRRTMEI 139 (333)
T ss_pred CCCCceeEEEeeccchhhh--HHHHHHHHHHHH
Confidence 3456789999999999987 666667776653
No 277
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.61 E-value=0.45 Score=60.86 Aligned_cols=88 Identities=17% Similarity=0.123 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHh--CCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEE
Q 037446 110 VRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW--FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDM 187 (1165)
Q Consensus 110 lr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~--~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l 187 (1165)
|.+-|.+++... ..+++|.|..|||||.+.+.-+..++.. .+..++|+|+.|+..+.+..+.+.+.++..
T Consensus 2 Ln~~Q~~av~~~-~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~------- 73 (664)
T TIGR01074 2 LNPQQQEAVEYV-TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG------- 73 (664)
T ss_pred CCHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc-------
Confidence 456688887643 4789999999999999988888888754 245689999999999999999888876521
Q ss_pred eCCCChHHHHhhcCCccEEEEcHHHHHHHHH
Q 037446 188 TGQISPTKRASFWKTKRVFFVTPQVLEKDIQ 218 (1165)
Q Consensus 188 ~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~ 218 (1165)
...+|.|.|...|...+.
T Consensus 74 -------------~~~~v~v~TfHs~a~~il 91 (664)
T TIGR01074 74 -------------EARGLTISTFHTLGLDII 91 (664)
T ss_pred -------------ccCCeEEEeHHHHHHHHH
Confidence 123678899988876553
No 278
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.59 E-value=0.54 Score=54.96 Aligned_cols=44 Identities=16% Similarity=0.037 Sum_probs=29.1
Q ss_pred CCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCCC
Q 037446 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPG 268 (1165)
Q Consensus 224 l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP~ 268 (1165)
...++++|||+||+|... .....++.+-.-+....+|++|..|.
T Consensus 130 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~~~ 173 (342)
T PRK06964 130 RGGARVVVLYPAEALNVA-AANALLKTLEEPPPGTVFLLVSARID 173 (342)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHhcCCCcCcEEEEEECChh
Confidence 356899999999999763 44444555545555556666666554
No 279
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.53 E-value=0.48 Score=58.37 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=18.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L 148 (1165)
.|+.+|.|+|||.++...+..+.
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 49999999999999877665553
No 280
>PRK11054 helD DNA helicase IV; Provisional
Probab=92.52 E-value=0.25 Score=63.05 Aligned_cols=86 Identities=19% Similarity=0.099 Sum_probs=65.6
Q ss_pred CCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhC--CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEE
Q 037446 108 VPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTI 185 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~--~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~ 185 (1165)
..|.+-|.+++.... .+++|.|..|||||.+.+.-+..++... .+.++|+|+.++..+....+.+...+|.
T Consensus 195 ~~L~~~Q~~av~~~~-~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~------ 267 (684)
T PRK11054 195 SPLNPSQARAVVNGE-DSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGT------ 267 (684)
T ss_pred CCCCHHHHHHHhCCC-CCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCC------
Confidence 467788988887543 6789999999999999887777766543 3458999999999999888888776541
Q ss_pred EEeCCCChHHHHhhcCCccEEEEcHHHHHHHH
Q 037446 186 DMTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217 (1165)
Q Consensus 186 ~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l 217 (1165)
..|.|.|.-.|...+
T Consensus 268 -----------------~~v~v~TFHSlal~I 282 (684)
T PRK11054 268 -----------------EDITARTFHALALHI 282 (684)
T ss_pred -----------------CCcEEEeHHHHHHHH
Confidence 246778887776543
No 281
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.46 E-value=0.83 Score=56.68 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=26.7
Q ss_pred CCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEc
Q 037446 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264 (1165)
Q Consensus 224 l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LS 264 (1165)
..+++++||||+|++... .+...++.+-..+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~-a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHH-HHHHHHHHHhCCCCCEEEEEEe
Confidence 356889999999999762 4544555555555555666655
No 282
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.32 E-value=1.7 Score=57.34 Aligned_cols=101 Identities=11% Similarity=0.104 Sum_probs=74.6
Q ss_pred hhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC--CccceeeecccccccCCCCCHHHH
Q 037446 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD--LVKATEFIGQSSGKASKGQSQKVQ 511 (1165)
Q Consensus 434 ~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~--~i~~~~l~G~~~g~~~ggms~~eR 511 (1165)
.+.....++|-...+..+...+. .+.+++|.++++.-|...++.++.... .+++..++| +.+..++
T Consensus 476 Ll~adTGsGKT~val~a~l~al~----~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg--------~~~~~e~ 543 (926)
T TIGR00580 476 LVCGDVGFGKTEVAMRAAFKAVL----DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSR--------FRSAKEQ 543 (926)
T ss_pred EEECCCCccHHHHHHHHHHHHHH----hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEec--------cccHHHH
Confidence 33445678888766555444433 467999999999999999998876521 244445554 6788899
Q ss_pred HHHHHHHhcCCceEEEEccc-ccccccccCCCEEEE
Q 037446 512 QAVLEKFRAGGYNVIVATSI-GEEGLDIMEVDLVIC 546 (1165)
Q Consensus 512 ~~il~~Fr~g~~~VLVATda-~~eGLDIp~vd~VI~ 546 (1165)
.++++.++.|+.+|+|+|.. +...+.+..+.+||.
T Consensus 544 ~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 544 NEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred HHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 99999999999999999964 445677788888775
No 283
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=92.32 E-value=0.55 Score=54.94 Aligned_cols=95 Identities=19% Similarity=0.148 Sum_probs=54.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
.+.|+.+|.|+|||-.+-+.+... +..+.-+..+.+=+.+..+.+.+.-.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~-----~~~f~~~sAv~~gvkdlr~i~e~a~~------------------------- 98 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTT-----NAAFEALSAVTSGVKDLREIIEEARK------------------------- 98 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhh-----CCceEEeccccccHHHHHHHHHHHHH-------------------------
Confidence 589999999999998877765443 33455555443333333333322100
Q ss_pred cEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCCCCC
Q 037446 204 RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSK 270 (1165)
Q Consensus 204 dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP~~~ 270 (1165)
.....+=-+|+|||+||+... -+ ..++-+-.+-.+++.-||-.|.
T Consensus 99 -----------------~~~~gr~tiLflDEIHRfnK~--QQ---D~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 99 -----------------NRLLGRRTILFLDEIHRFNKA--QQ---DALLPHVENGTIILIGATTENP 143 (436)
T ss_pred -----------------HHhcCCceEEEEehhhhcChh--hh---hhhhhhhcCCeEEEEeccCCCC
Confidence 000112246889999999762 22 2233333445778888987654
No 284
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.30 E-value=0.73 Score=54.50 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=18.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.|+.+|.|+|||..+...+..+
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHh
Confidence 5899999999999887766554
No 285
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.16 E-value=0.45 Score=54.18 Aligned_cols=94 Identities=20% Similarity=0.107 Sum_probs=54.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCC-C----CeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHh
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFP-D----GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRAS 198 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~-~----~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~ 198 (1165)
.+.+|.++||.|||.+.--....+-.... . +-+++-+|..+=....+..+-..+|.|... ........
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~------~~~~~~~~- 134 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP------RDRVAKLE- 134 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC------CCCHHHHH-
Confidence 47999999999999864333322211110 1 135666777777777777777777765211 11111100
Q ss_pred hcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCc
Q 037446 199 FWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN 241 (1165)
Q Consensus 199 l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~ 241 (1165)
.....++ ..-..++|||||.|+++..
T Consensus 135 ------------~~~~~ll-----r~~~vrmLIIDE~H~lLaG 160 (302)
T PF05621_consen 135 ------------QQVLRLL-----RRLGVRMLIIDEFHNLLAG 160 (302)
T ss_pred ------------HHHHHHH-----HHcCCcEEEeechHHHhcc
Confidence 0111222 2345789999999998763
No 286
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.14 E-value=0.45 Score=53.40 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=36.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
.++++.+++|+|||..++.....++. .+.++ +++++.+|+.++...+..
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~--~g~sv-~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLK--AGISV-LFITAPDLLSKLKAAFDE 154 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHH--cCCeE-EEEEHHHHHHHHHHHHhc
Confidence 68999999999999998887777762 23344 455666888877666554
No 287
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.92 E-value=2 Score=58.01 Aligned_cols=161 Identities=13% Similarity=0.117 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHH------HhhhccCCCChHHHHH
Q 037446 374 GEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLM------QQSISHGAQSPKLSKM 447 (1165)
Q Consensus 374 ~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l------~~~~~~~~~s~Kl~~L 447 (1165)
..+......|..+|..++........+......+....-.+...-.....+..+...+ ...+.....++|-...
T Consensus 559 ~~~~~~a~~l~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~va 638 (1147)
T PRK10689 559 EKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVA 638 (1147)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHH
Confidence 3444555667777777776655444333222222222222211111112222222221 1133445678888654
Q ss_pred HHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC--CccceeeecccccccCCCCCHHHHHHHHHHHhcCCceE
Q 037446 448 LEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD--LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNV 525 (1165)
Q Consensus 448 lelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~--~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~V 525 (1165)
+..+..... .+.+++|.++++.-|..++..+.+... .+++..++| +.+..++..+++.+++|..+|
T Consensus 639 l~aa~~~~~----~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g--------~~s~~e~~~il~~l~~g~~dI 706 (1147)
T PRK10689 639 MRAAFLAVE----NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSR--------FRSAKEQTQILAEAAEGKIDI 706 (1147)
T ss_pred HHHHHHHHH----cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEEC--------CCCHHHHHHHHHHHHhCCCCE
Confidence 443333332 478999999999999999998876421 244444554 568889999999999999999
Q ss_pred EEEcc-cccccccccCCCEEEE
Q 037446 526 IVATS-IGEEGLDIMEVDLVIC 546 (1165)
Q Consensus 526 LVATd-a~~eGLDIp~vd~VI~ 546 (1165)
+|+|. .+...+.+..+.+||.
T Consensus 707 VVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 707 LIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred EEECHHHHhCCCCHhhCCEEEE
Confidence 99995 3445567777888775
No 288
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.89 E-value=0.79 Score=52.25 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=23.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
.++++++||+|||.+....+..+.......++.+|.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 467889999999998877766554331223444443
No 289
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.89 E-value=1.5 Score=52.68 Aligned_cols=118 Identities=17% Similarity=0.110 Sum_probs=65.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeEEEEecCh-hHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIVFAAPSR-PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rvLILvPtr-~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~ 202 (1165)
.+.+.++||+|||-+....+..++... ...-.++.+.+. .=+.++...+.+++|.+. .
T Consensus 193 vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~---~----------------- 252 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV---R----------------- 252 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce---e-----------------
Confidence 477889999999998776665443332 233345555552 223444555556555431 1
Q ss_pred ccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCC-CCCeEEEEccCCCC
Q 037446 203 KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP-VQLRILALTATPGS 269 (1165)
Q Consensus 203 ~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~-~~~riL~LSATP~~ 269 (1165)
.+.++..+...+. .+.+.++++||.+=+..........+..+.... ....+|.|+||-..
T Consensus 253 ---~v~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~ 313 (420)
T PRK14721 253 ---SIKDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG 313 (420)
T ss_pred ---cCCCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH
Confidence 1122333333222 355678999999744433223444555554432 33467889999643
No 290
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.88 E-value=0.56 Score=58.61 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=27.0
Q ss_pred CCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEc
Q 037446 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264 (1165)
Q Consensus 224 l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LS 264 (1165)
..+.+++||||+|.+... .+...++.+-..+....+|+.|
T Consensus 116 ~~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 356889999999999863 5554555555555555556655
No 291
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.87 E-value=0.62 Score=58.31 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=20.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L 148 (1165)
+..|+.++.|+|||.++.+.+..++
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcc
Confidence 3578899999999999888776653
No 292
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.79 E-value=0.62 Score=55.78 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=19.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L 148 (1165)
..|+.+|.|+|||.++.+.+..+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 378999999999998887766553
No 293
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.71 E-value=0.66 Score=54.57 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=28.6
Q ss_pred CCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCCC
Q 037446 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPG 268 (1165)
Q Consensus 224 l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP~ 268 (1165)
...+.+|||||||.+... .....++.+-..+....+|++|..|.
T Consensus 139 ~g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit~~~~ 182 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILISHSSG 182 (351)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEECChh
Confidence 456889999999999763 44444454545445556666665553
No 294
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=91.63 E-value=0.64 Score=50.65 Aligned_cols=24 Identities=13% Similarity=-0.000 Sum_probs=19.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+.+++.+++|+|||..+.....+.
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999877665554
No 295
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.61 E-value=0.81 Score=44.86 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=22.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
+|+.+|.|+|||..+-..+..+ +..++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----cccccccccc
Confidence 5889999999999876665543 3345555554
No 296
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.58 E-value=1.4 Score=55.22 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=19.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
-.|+++|.|+|||.++-+.+..+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999887776554
No 297
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.53 E-value=1.2 Score=53.81 Aligned_cols=118 Identities=20% Similarity=0.291 Sum_probs=61.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec-C-hhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP-S-RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP-t-r~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~ 202 (1165)
.+++++++|+|||.++...+..+.. .+.++++|.. + +.-+.++.+.+....+.+ + .+....
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~--~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp---~---~~~~~~--------- 159 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKK--KGLKVGLVAADTYRPAAYDQLKQLAEKIGVP---F---YGDPDN--------- 159 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEecCCCCCHHHHHHHHHHHHHcCCc---E---EecCCc---------
Confidence 4778899999999998887765533 2345555443 2 232333333333334443 1 111100
Q ss_pred ccEEEEcH-HHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcC-CCCCeEEEEccCCC
Q 037446 203 KRVFFVTP-QVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV-PVQLRILALTATPG 268 (1165)
Q Consensus 203 ~dIlVaTp-q~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~-~~~~riL~LSATP~ 268 (1165)
..| ..+...+.. ....++||||.+-+...+......++.+... .+..-++.+.||..
T Consensus 160 -----~d~~~i~~~al~~----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 160 -----KDAVEIAKEGLEK----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred -----cCHHHHHHHHHHH----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc
Confidence 011 122222321 1224899999997665433444445555442 34445677777765
No 298
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.38 E-value=1 Score=56.91 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=20.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L 148 (1165)
+..|+.++.|+|||..+...+..+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhc
Confidence 4568999999999999888776654
No 299
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.32 E-value=0.73 Score=56.32 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=18.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
..|+.+|.|+|||.++-+.+..+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999887766554
No 300
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=91.27 E-value=0.22 Score=56.03 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=27.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~ 167 (1165)
++|.+|||+||+-..=-.+-..+..-....|+||+|++..+-
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIp 131 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIP 131 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCC
Confidence 678899999999643222222222334458999999986543
No 301
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.17 E-value=0.9 Score=57.22 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=19.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L 148 (1165)
..|+.+|.|+|||.++.+.+..+.
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999888776653
No 302
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=91.14 E-value=0.98 Score=54.85 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=29.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ 169 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~ 169 (1165)
+.+++.+++|+|||..+......+.. .+.+++++... .+..+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~--~~~~v~yi~~~-~f~~~~ 184 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE--SGGKILYVRSE-LFTEHL 184 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEeeHH-HHHHHH
Confidence 35889999999999987765554433 24677777653 454433
No 303
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.12 E-value=1.5 Score=54.79 Aligned_cols=133 Identities=19% Similarity=0.140 Sum_probs=81.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCC--CCceEEEEeCCCChHHHHhhcC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGI--PQEWTIDMTGQISPTKRASFWK 201 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~--~~~~v~~l~G~~~~~~~~~l~~ 201 (1165)
+-.++..|=-.|||.+....+..++...++-++++++|.+..+....+++...+.. +...+..+.|. .. --.+..
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I--~i~f~n 331 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TI--SFSFPD 331 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EE--EEEecC
Confidence 34788899999999976644444444557889999999999999998888775431 11112222331 10 001111
Q ss_pred C--ccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCCC
Q 037446 202 T--KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPG 268 (1165)
Q Consensus 202 ~--~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP~ 268 (1165)
+ ..|.++|- ...+...-..++++|||||+-+... .+..++-.+.. ...++|.+|-|-.
T Consensus 332 G~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~-al~~ilp~l~~--~n~k~I~ISS~Ns 391 (738)
T PHA03368 332 GSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD-AVQTIMGFLNQ--TNCKIIFVSSTNT 391 (738)
T ss_pred CCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH-HHHHHHHHHhc--cCccEEEEecCCC
Confidence 2 25555532 1112233447999999999999873 45444433332 2667889987753
No 304
>PF13173 AAA_14: AAA domain
Probab=91.00 E-value=1.1 Score=44.52 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=26.6
Q ss_pred CccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCC
Q 037446 226 YLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267 (1165)
Q Consensus 226 ~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP 267 (1165)
.-.+|+|||+|++.+ +...++.+.......+ +.+|++.
T Consensus 61 ~~~~i~iDEiq~~~~---~~~~lk~l~d~~~~~~-ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD---WEDALKFLVDNGPNIK-IILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc---HHHHHHHHHHhccCce-EEEEccc
Confidence 457899999999964 5666777776544445 5566664
No 305
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=90.93 E-value=1.1 Score=51.91 Aligned_cols=122 Identities=15% Similarity=0.081 Sum_probs=58.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
+-.|+.++.|.||+..+...+..++-..+.+. -| -.....++.+.....-.+..+..... .
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~----~~-----Cg~C~sC~~~~~g~HPD~~~i~p~~~----------~ 85 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGD----QP-----CGQCHSCHLFQAGNHPDFHILEPIDN----------K 85 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC----CC-----CCCCHHHHHHhcCCCCCEEEEccccC----------C
Confidence 34678999999999988777766543221110 01 11223444433211111222221100 0
Q ss_pred cEEEEcHHHHHHHHHc--CccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCCC
Q 037446 204 RVFFVTPQVLEKDIQS--GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPG 268 (1165)
Q Consensus 204 dIlVaTpq~L~~~l~~--~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP~ 268 (1165)
.| ..+.+...... ..-....++++|||+||+|... .....++.+-.-+....+|++|..|.
T Consensus 86 ~I---~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~~~~ 148 (325)
T PRK06871 86 DI---GVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQADLSA 148 (325)
T ss_pred CC---CHHHHHHHHHHHhhccccCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEECChH
Confidence 11 22333332221 1112356889999999999862 33334444444444455555555453
No 306
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.87 E-value=2.6 Score=48.43 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=18.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
++++.++.|+|||.++...+.+.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999998876655443
No 307
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.83 E-value=2.3 Score=51.91 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=31.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe-cC-hhHHHHHHHHHHHHhCC
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA-PS-RPLVMQQIEACHNIVGI 179 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv-Pt-r~La~Q~~~e~~kl~g~ 179 (1165)
+.+.++||+|||.+....+..+.......++.+|. -+ +.=+.++.+.+.++.|.
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGV 314 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 314 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCC
Confidence 56789999999999887776554333233444332 22 22334445555555554
No 308
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=90.73 E-value=1.6 Score=50.70 Aligned_cols=135 Identities=12% Similarity=0.080 Sum_probs=67.0
Q ss_pred ChHHHHHHHHHhhc--------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhC--C
Q 037446 110 VRDYQFAITKTALF--------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVG--I 179 (1165)
Q Consensus 110 lr~yQ~eal~~ll~--------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g--~ 179 (1165)
++|||......+.. +-.|+.++.|.||+..+...+..++-..+... -| .....++.+.. .
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~---~C-------g~C~sC~~~~~g~H 73 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE---AC-------GFCHSCELMQSGNH 73 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC---CC-------CCCHHHHHHHcCCC
Confidence 34555555444442 35888999999999887777666543222111 01 11233433322 2
Q ss_pred CCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHc--CccCCCCccEEEEcccccccCccchHHHHHHHHcCCCC
Q 037446 180 PQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS--GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQ 257 (1165)
Q Consensus 180 ~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~--~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~ 257 (1165)
|... .+..... +..| +.+.+...... ..-....++++|||+||+|... .....++.+-.-+..
T Consensus 74 PD~~--~i~p~~~---------~~~I---~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~ 138 (319)
T PRK06090 74 PDLH--VIKPEKE---------GKSI---TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNES-ASNALLKTLEEPAPN 138 (319)
T ss_pred CCEE--EEecCcC---------CCcC---CHHHHHHHHHHHhhCcccCCceEEEecchhhhCHH-HHHHHHHHhcCCCCC
Confidence 3222 2211100 0011 22333322211 1123456899999999999762 343444444444455
Q ss_pred CeEEEEccCCCC
Q 037446 258 LRILALTATPGS 269 (1165)
Q Consensus 258 ~riL~LSATP~~ 269 (1165)
..+|++|..|..
T Consensus 139 t~fiL~t~~~~~ 150 (319)
T PRK06090 139 CLFLLVTHNQKR 150 (319)
T ss_pred eEEEEEECChhh
Confidence 556666665643
No 309
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.63 E-value=1.6 Score=52.24 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L 148 (1165)
+..|+.+|.|+|||..+...+..++
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4588999999999998877765543
No 310
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=90.60 E-value=2.6 Score=52.83 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=43.4
Q ss_pred hhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhC
Q 037446 121 ALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVG 178 (1165)
Q Consensus 121 ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g 178 (1165)
..++-.++.+|=|.|||.+..+.+..++.. .+.+++|.+|...-+.+..+.+...+.
T Consensus 185 fkq~~tV~taPRqrGKS~iVgi~l~~La~f-~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 185 YGKCYTAATVPRRCGKTTIMAIILAAMISF-LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred HhhcceEEEeccCCCcHHHHHHHHHHHHHh-cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 333668888999999999877666555432 356899999999988888888776654
No 311
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.38 E-value=1.1 Score=51.51 Aligned_cols=119 Identities=16% Similarity=0.117 Sum_probs=58.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccE
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dI 205 (1165)
.|+.+|.|+|||.++...+..++...+....-..+. ..+..+.......+..+...... ..+
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~d~lel~~s~~~--------~~~- 88 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC---------RSCKLIPAGNHPDFLELNPSDLR--------KID- 88 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch---------hhhhHHhhcCCCceEEecccccC--------CCc-
Confidence 899999999999998887777653322111110000 22222111111122222221111 111
Q ss_pred EEEcHHHHHHHHHcCccC--CCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccC
Q 037446 206 FFVTPQVLEKDIQSGTCL--MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266 (1165)
Q Consensus 206 lVaTpq~L~~~l~~~~~~--l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSAT 266 (1165)
...+.+.......... ...+++||||||+.+.. .-...+.+.+..++....+.|++.
T Consensus 89 --i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~--~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 89 --IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE--DAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred --chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH--HHHHHHHHHhccCCCCeEEEEEcC
Confidence 1223333333222222 36789999999999986 344445555554444344444444
No 312
>PRK13342 recombination factor protein RarA; Reviewed
Probab=90.38 E-value=1.7 Score=52.44 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=17.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil 145 (1165)
..+|+.+|+|+|||..+.....
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999988766543
No 313
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.37 E-value=1.3 Score=55.01 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=25.3
Q ss_pred CCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEc
Q 037446 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264 (1165)
Q Consensus 224 l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LS 264 (1165)
..+.+++||||||++... .....++.+-..+....+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 346789999999999762 4444444444444555555555
No 314
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.28 E-value=0.99 Score=53.37 Aligned_cols=128 Identities=18% Similarity=0.180 Sum_probs=64.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCC--------eEEEEecChhHHHHHHHHHHHHh--CCCCceEEEEeCCCChH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDG--------KIVFAAPSRPLVMQQIEACHNIV--GIPQEWTIDMTGQISPT 194 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~--------rvLILvPtr~La~Q~~~e~~kl~--g~~~~~v~~l~G~~~~~ 194 (1165)
-.|+.+|.|+||+..+...+..++-..+.+ ..+-+|+.- ..++.+. ..|....+.-..+....
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c-------~~c~~i~~~~HPDl~~i~~~~~~~~~ 115 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH-------PVARRIAAGAHGGLLTLERSWNEKGK 115 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC-------hHHHHHHccCCCCeEEEecccccccc
Confidence 488999999999998887777665332211 122233331 2222221 23333322211100000
Q ss_pred HHHhhcCCccEEEEcHHHHHHHHHc--CccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCCC
Q 037446 195 KRASFWKTKRVFFVTPQVLEKDIQS--GTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPG 268 (1165)
Q Consensus 195 ~~~~l~~~~dIlVaTpq~L~~~l~~--~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP~ 268 (1165)
+ ....| +.+.+...... .......+.+|||||+|++... .....++.+...+....+|++|..+.
T Consensus 116 -~----~~~~I---~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 116 -R----LRTVI---TVDEVRELISFFGLTAAEGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred -c----ccccc---cHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCch
Confidence 0 01223 33444433321 1123356889999999999652 44445555555444555666666664
No 315
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=90.23 E-value=0.59 Score=52.14 Aligned_cols=84 Identities=15% Similarity=0.149 Sum_probs=59.2
Q ss_pred CCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCC-ChHHHHhhcC--CccEEEEcHHHHHHHHHcCccCCCCccE
Q 037446 153 DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQI-SPTKRASFWK--TKRVFFVTPQVLEKDIQSGTCLMKYLVC 229 (1165)
Q Consensus 153 ~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~-~~~~~~~l~~--~~dIlVaTpq~L~~~l~~~~~~l~~~~l 229 (1165)
.+.+|||+..--=+....+.++.+-+ ....++.+.... ...++..+.+ ..+|.|+||++|..++..+.+.+.++.+
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~ 204 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKR 204 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeE
Confidence 35789999885557777777776522 112233444433 3334433333 5799999999999999999999999999
Q ss_pred EEEccccc
Q 037446 230 LVIDEAHR 237 (1165)
Q Consensus 230 VVIDEAHr 237 (1165)
||||--|.
T Consensus 205 ivlD~s~~ 212 (252)
T PF14617_consen 205 IVLDWSYL 212 (252)
T ss_pred EEEcCCcc
Confidence 99998764
No 316
>PRK06921 hypothetical protein; Provisional
Probab=90.21 E-value=0.55 Score=53.07 Aligned_cols=43 Identities=12% Similarity=0.059 Sum_probs=28.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q 168 (1165)
.++++.+++|+|||..+...+.+++.. .+..++++.. .++..+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~-~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRK-KGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhh-cCceEEEEEH-HHHHHH
Confidence 579999999999998877666555432 1345666554 355444
No 317
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=90.11 E-value=0.99 Score=56.29 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=19.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L 148 (1165)
-.|+.+|.|+|||..+...+..+.
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999998887776553
No 318
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=90.07 E-value=1.6 Score=50.39 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=23.4
Q ss_pred CccEEEEcccccccCccchHHHHHHHHc-CCCCCeEEEEccC
Q 037446 226 YLVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTAT 266 (1165)
Q Consensus 226 ~~~lVVIDEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSAT 266 (1165)
..++|||||+|.+... .....++.++. .....+++ +|++
T Consensus 100 ~~~vliiDe~d~l~~~-~~~~~L~~~le~~~~~~~~I-lt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLA-DAQRHLRSFMEAYSKNCSFI-ITAN 139 (316)
T ss_pred CCeEEEEECcccccCH-HHHHHHHHHHHhcCCCceEE-EEcC
Confidence 4679999999998432 33445555454 34444544 4554
No 319
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.06 E-value=2.4 Score=48.02 Aligned_cols=117 Identities=18% Similarity=0.177 Sum_probs=66.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec-C--hhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP-S--RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW 200 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP-t--r~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~ 200 (1165)
..+.+.+++|+|||..+...+..+.. ...++.++.- + ...+.||...... .+++
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~--~~~~v~~i~~D~~ri~~~~ql~~~~~~-~~~~-------------------- 132 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG--KKKTVGFITTDHSRIGTVQQLQDYVKT-IGFE-------------------- 132 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHHHhhh-cCce--------------------
Confidence 46788999999999988776655432 2345554443 2 2466666544333 2321
Q ss_pred CCccEEE-EcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcC-CCCCeEEEEccCCC
Q 037446 201 KTKRVFF-VTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV-PVQLRILALTATPG 268 (1165)
Q Consensus 201 ~~~dIlV-aTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~-~~~~riL~LSATP~ 268 (1165)
+.. .++..+...+.. .-...++++||||-+=+...+......+..+... .+...+|.++||..
T Consensus 133 ----~~~~~~~~~l~~~l~~-l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~ 197 (270)
T PRK06731 133 ----VIAVRDEAAMTRALTY-FKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK 197 (270)
T ss_pred ----EEecCCHHHHHHHHHH-HHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC
Confidence 111 244555444331 0112468999999998875432344444444443 23334677999864
No 320
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.99 E-value=0.32 Score=59.77 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=40.0
Q ss_pred CCCCCCCChHHHHHHHHHhhc-----CCeEEEcCCCchHHHHHHHHHHHHHHh
Q 037446 103 IYPVNVPVRDYQFAITKTALF-----SNTLVALPTGLGKTLIAAVVIYNFFRW 150 (1165)
Q Consensus 103 ~~Pt~IQlr~yQ~eal~~ll~-----rnvIl~a~TGsGKTL~a~lpil~~L~~ 150 (1165)
..|.+++|++.|....+.+.. +-+|+.+|||+|||+..+..++..|..
T Consensus 9 ~F~fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 9 EFPFPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred ccCCCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 456788999999999998875 558899999999999988887777644
No 321
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.95 E-value=1.6 Score=55.59 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=18.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
-.|+.||.|+|||.++-+.+..+
T Consensus 42 AYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 36899999999999887776554
No 322
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.80 E-value=1.8 Score=53.54 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=25.1
Q ss_pred CCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEc
Q 037446 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264 (1165)
Q Consensus 224 l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LS 264 (1165)
...++++||||||++... .....++.+-..+....+|+.|
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 357899999999999762 4433444444444555555544
No 323
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=89.79 E-value=0.49 Score=51.68 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=18.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
++|+.+|.|+|||-.+-+.+.+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHhc
Confidence 6899999999999887665544
No 324
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.78 E-value=1.4 Score=55.44 Aligned_cols=116 Identities=17% Similarity=0.200 Sum_probs=56.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCC-CCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFP-DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~-~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
-.|+.++.|+|||.++.+.+..+.-... ... |- .....|..+.......+..+.|.....
T Consensus 40 ayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~-----~c-----~~c~~c~~i~~g~~~d~~eid~~s~~~--------- 100 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILAKALNCEQGLTAE-----PC-----NVCPPCVEITEGRSVDVFEIDGASNTG--------- 100 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhcCCCCCCCC-----CC-----CccHHHHHHhcCCCCCeeeeeccCccC---------
Confidence 3589999999999988776655432111 000 11 011233333333333344444432210
Q ss_pred cEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEc
Q 037446 204 RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264 (1165)
Q Consensus 204 dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LS 264 (1165)
|-....+...+.... ...+++++||||+|.+... .+...++.|-..+....+|+.|
T Consensus 101 ---v~~ir~l~~~~~~~p-~~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 101 ---VDDIRELRENVKYLP-SRSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred ---HHHHHHHHHHHHhcc-ccCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 001112222222111 2356899999999999752 4444444444444455555544
No 325
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=89.71 E-value=1.1 Score=48.99 Aligned_cols=36 Identities=6% Similarity=0.009 Sum_probs=24.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP 161 (1165)
+.+++.+++|+|||..+.....+... .+..++++.-
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~--~~~~~~~i~~ 78 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASY--GGRNARYLDA 78 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh--CCCcEEEEeh
Confidence 56999999999999876665544432 2344555543
No 326
>PRK08939 primosomal protein DnaI; Reviewed
Probab=89.67 E-value=1.3 Score=51.01 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=29.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~ 170 (1165)
+++++.+++|+|||..+...+.++.. .+..++|+.-. .|+.+..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~--~g~~v~~~~~~-~l~~~lk 200 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAK--KGVSSTLLHFP-EFIRELK 200 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEEEHH-HHHHHHH
Confidence 47889999999999998877766653 23445544322 4554443
No 327
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=89.67 E-value=1.1 Score=57.94 Aligned_cols=107 Identities=15% Similarity=0.072 Sum_probs=74.6
Q ss_pred CChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhC--CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEE
Q 037446 109 PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID 186 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~--~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~ 186 (1165)
.|++-|.+++... ...++|.|..|||||.+...-+.+++... .+.++|+|+-|+..+....+.+.++++.
T Consensus 4 ~Ln~~Q~~av~~~-~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~------- 75 (726)
T TIGR01073 4 HLNPEQREAVKTT-EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGP------- 75 (726)
T ss_pred ccCHHHHHHHhCC-CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhcc-------
Confidence 4677798988753 47899999999999999888888877542 4468999999999998888888876542
Q ss_pred EeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccC-C-CCccEEEEccccc
Q 037446 187 MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL-M-KYLVCLVIDEAHR 237 (1165)
Q Consensus 187 l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~-l-~~~~lVVIDEAHr 237 (1165)
...++.|+|...|...+.+.... + -.-++-|+|+.+.
T Consensus 76 --------------~~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~~ 114 (726)
T TIGR01073 76 --------------VAEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTDQ 114 (726)
T ss_pred --------------ccCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHHH
Confidence 11356789998887654321111 0 0123446776653
No 328
>PTZ00293 thymidine kinase; Provisional
Probab=89.61 E-value=2.5 Score=45.99 Aligned_cols=109 Identities=16% Similarity=0.059 Sum_probs=58.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccE
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dI 205 (1165)
-++.+||++|||...+-.+..+.. .+.+++++-|... .++.+. ..+.-..+.. . .-+
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~--ag~kv~~~kp~~D---------tR~~~~---~~I~Sh~g~~--------~-~a~ 63 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTY--SEKKCVVIKYSKD---------TRYSDE---QNISSHDKQM--------L-KAI 63 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHH--cCCceEEEEeccc---------ccCCCC---CcEEecCCCc--------c-eeE
Confidence 467899999999765555544432 3567899988731 011011 0111111111 1 123
Q ss_pred EEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCC
Q 037446 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267 (1165)
Q Consensus 206 lVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP 267 (1165)
.+.....+...+ .++++|+|||||-+. ........+.......-+-||-++-
T Consensus 64 ~v~~~~e~~~~~-------~~~dvI~IDEaQFf~---~i~~~~~~l~~~g~~VivaGLd~Df 115 (211)
T PTZ00293 64 KVSKLKEVLETA-------KNYDVIAIDEGQFFP---DLVEFSEAAANLGKIVIVAALDGTF 115 (211)
T ss_pred EcCCHHHHHHhc-------cCCCEEEEEchHhhH---hHHHHHHHHHHCCCeEEEEecCccc
Confidence 443433333221 458999999999983 3445555555554454444555443
No 329
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=89.42 E-value=1.1 Score=54.72 Aligned_cols=88 Identities=14% Similarity=0.058 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHCCCCCCCCC--CChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCC----CCeEEEEec
Q 037446 88 SLCHVQIDAEAAKTWIYPVNV--PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFP----DGKIVFAAP 161 (1165)
Q Consensus 88 ~L~~~Ll~~L~~~g~~~Pt~I--Qlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~----~~rvLILvP 161 (1165)
+-.+.|...|....-....+| +...-|-+++..-.+.-+||.+..|||||-+++.-+..++...+ .+.+||+.|
T Consensus 189 ~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~P 268 (747)
T COG3973 189 GRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGP 268 (747)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcC
Confidence 445556666665544333221 12233555655444456889999999999999887776665433 235999999
Q ss_pred ChhHHHHHHHHHHH
Q 037446 162 SRPLVMQQIEACHN 175 (1165)
Q Consensus 162 tr~La~Q~~~e~~k 175 (1165)
.+-++.=+.+.+-.
T Consensus 269 N~vFleYis~VLPe 282 (747)
T COG3973 269 NRVFLEYISRVLPE 282 (747)
T ss_pred cHHHHHHHHHhchh
Confidence 98777665555544
No 330
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.19 E-value=1 Score=52.32 Aligned_cols=140 Identities=16% Similarity=0.077 Sum_probs=61.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHH-HH---HHHHHhCCCCceEEEE-eCCCChHHHHhhcC
Q 037446 127 LVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ-IE---ACHNIVGIPQEWTIDM-TGQISPTKRASFWK 201 (1165)
Q Consensus 127 Il~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~-~~---e~~kl~g~~~~~v~~l-~G~~~~~~~~~l~~ 201 (1165)
|+.++.|+|||.+.+..++..+...+..+.++++++..-+.+. .+ .+..+... ......- ..+.. ..+..
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~n 75 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRK----IILPN 75 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSE----EEETT
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCc----EEecC
Confidence 5778999999999887777666655553444444665544442 22 22222221 1111110 00000 00124
Q ss_pred CccEEEEcHHHH--HHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCCCCChHHHHHHH
Q 037446 202 TKRVFFVTPQVL--EKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHII 278 (1165)
Q Consensus 202 ~~dIlVaTpq~L--~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP~~~~~~l~~Li 278 (1165)
+..|.+.+...- ..-+. -..+++|+|||+-.+... .+...+...+........+..|.|+... ..+..++
T Consensus 76 G~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~p~~~~-~~~~~~~ 147 (384)
T PF03237_consen 76 GSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDD-AFSELIRRLRATWGGSIRMYISTPPNPG-GWFYEIF 147 (384)
T ss_dssp S-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTH-HHHHHHHHHHHCSTT--EEEEEE---SS-SHHHHHH
T ss_pred ceEEEEecccccccccccc-----ccccceeeeeecccCchH-HHHHHHHhhhhcccCcceEEeecCCCCC-Cceeeee
Confidence 555666664321 11111 156889999999888763 5656666665544433333555554332 3344443
No 331
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=88.94 E-value=1.6 Score=51.93 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=30.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
+-+++.+++|+|||-.........+...++.+++++...
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 468899999999999877776666666677777776654
No 332
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=88.89 E-value=1.8 Score=55.55 Aligned_cols=100 Identities=12% Similarity=0.179 Sum_probs=75.8
Q ss_pred hccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCC--ccceeeecccccccCCCCCHHHHH
Q 037446 435 ISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQ 512 (1165)
Q Consensus 435 ~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~--i~~~~l~G~~~g~~~ggms~~eR~ 512 (1165)
+.....+.|-...+-.+...+. .+.+++|.++++.-|..+++.++..... +++..++| +++..+|.
T Consensus 287 l~~~TGSGKT~va~~~il~~~~----~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G--------~~~~~~r~ 354 (681)
T PRK10917 287 LQGDVGSGKTVVAALAALAAIE----AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTG--------SLKGKERR 354 (681)
T ss_pred EECCCCCcHHHHHHHHHHHHHH----cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcC--------CCCHHHHH
Confidence 3445678888765555444443 4789999999999999888888765311 55666665 78999999
Q ss_pred HHHHHHhcCCceEEEEccc-ccccccccCCCEEEE
Q 037446 513 AVLEKFRAGGYNVIVATSI-GEEGLDIMEVDLVIC 546 (1165)
Q Consensus 513 ~il~~Fr~g~~~VLVATda-~~eGLDIp~vd~VI~ 546 (1165)
.+++.+.+|+..|+|+|.. +...+.+..+.+||.
T Consensus 355 ~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 355 EILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred HHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 9999999999999999964 455677888888875
No 333
>CHL00181 cbbX CbbX; Provisional
Probab=88.71 E-value=2.1 Score=48.90 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=19.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
++++.+++|+|||.++-..+..+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999988776554
No 334
>PRK05580 primosome assembly protein PriA; Validated
Probab=88.67 E-value=2.7 Score=53.97 Aligned_cols=96 Identities=13% Similarity=0.152 Sum_probs=75.0
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhc-CCCccceeeecccccccCCCCCHHHHHHHHH
Q 037446 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI-GDLVKATEFIGQSSGKASKGQSQKVQQAVLE 516 (1165)
Q Consensus 438 ~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~-g~~i~~~~l~G~~~g~~~ggms~~eR~~il~ 516 (1165)
.+.+.|-...+..+...+. .+.++||.++++..+..+.+.|++. | ..+..+|| +++..+|.+...
T Consensus 170 ~TGSGKT~v~l~~i~~~l~----~g~~vLvLvPt~~L~~Q~~~~l~~~fg--~~v~~~~s--------~~s~~~r~~~~~ 235 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLA----QGKQALVLVPEIALTPQMLARFRARFG--APVAVLHS--------GLSDGERLDEWR 235 (679)
T ss_pred CCCChHHHHHHHHHHHHHH----cCCeEEEEeCcHHHHHHHHHHHHHHhC--CCEEEEEC--------CCCHHHHHHHHH
Confidence 4567888888777766655 4679999999999999999999774 4 55666665 789999999999
Q ss_pred HHhcCCceEEEEcccccccccccCCCEEEEec
Q 037446 517 KFRAGGYNVIVATSIGEEGLDIMEVDLVICFD 548 (1165)
Q Consensus 517 ~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D 548 (1165)
+...|+.+|+|+|..+- -+.+.++.+||.-+
T Consensus 236 ~~~~g~~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 236 KAKRGEAKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred HHHcCCCCEEEeccHHh-cccccCCCEEEEEC
Confidence 99999999999997432 25566788877654
No 335
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.60 E-value=1.9 Score=54.31 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=18.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.|+.++.|+|||.++...+..+
T Consensus 41 ~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 41 YLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999887776555
No 336
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.54 E-value=5.6 Score=47.13 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=63.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe-cC-hh-HHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA-PS-RP-LVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK 201 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv-Pt-r~-La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~ 201 (1165)
.+++.+|+|+|||.++...+..+... +.++.+|. -+ |. -+.||..... ..+.+ +
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae-~lgvp---v----------------- 264 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYAD-KLDVE---L----------------- 264 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhh-cCCCC---E-----------------
Confidence 46788999999999887777655433 34554443 33 22 2345443332 23332 1
Q ss_pred CccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCC-CeEEEEccCCCCChHHHHHHH
Q 037446 202 TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQ-LRILALTATPGSKQQTIQHII 278 (1165)
Q Consensus 202 ~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~-~riL~LSATP~~~~~~l~~Li 278 (1165)
++..+|+.+...+..-. ...++++|+||=+=+...+......+..+.....+ .-++.++||. ...++..++
T Consensus 265 ---~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~ 336 (407)
T PRK12726 265 ---IVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTIL 336 (407)
T ss_pred ---EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHH
Confidence 11235555655443211 12457999999887764432344444444443222 2234455543 333444443
No 337
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=88.34 E-value=8.4 Score=51.04 Aligned_cols=163 Identities=17% Similarity=0.158 Sum_probs=106.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHh------hhccCCCChHHH
Q 037446 372 KFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQ------SISHGAQSPKLS 445 (1165)
Q Consensus 372 ~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~------~~~~~~~s~Kl~ 445 (1165)
....+......|+.+|.-++........+........-..-.+..--+....+..+..-++. .+-....-+|-+
T Consensus 551 ~~~~v~diA~eLi~lyA~R~~~~G~af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTE 630 (1139)
T COG1197 551 ARKKVRDIAAELIKLYAKRQAKKGFAFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTE 630 (1139)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHH
Confidence 34456666777778887777666555544333333322222222222222233333333322 122234577777
Q ss_pred HHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhc--CCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCc
Q 037446 446 KMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI--GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGY 523 (1165)
Q Consensus 446 ~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~--g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~ 523 (1165)
.-+........ .+.+|.|.++|+--|+.-++.|++. ++.+++..+.- =.+.+++.++++..++|++
T Consensus 631 VAmRAAFkAV~----~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSR--------F~s~kE~~~il~~la~G~v 698 (1139)
T COG1197 631 VAMRAAFKAVM----DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSR--------FRSAKEQKEILKGLAEGKV 698 (1139)
T ss_pred HHHHHHHHHhc----CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecc--------cCCHHHHHHHHHHHhcCCc
Confidence 66666655544 6899999999999999999999876 54456555543 2489999999999999999
Q ss_pred eEEEEc-ccccccccccCCCEEEE
Q 037446 524 NVIVAT-SIGEEGLDIMEVDLVIC 546 (1165)
Q Consensus 524 ~VLVAT-da~~eGLDIp~vd~VI~ 546 (1165)
+|+|.| .+++.+|-+.++..||.
T Consensus 699 DIvIGTHrLL~kdv~FkdLGLlII 722 (1139)
T COG1197 699 DIVIGTHRLLSKDVKFKDLGLLII 722 (1139)
T ss_pred cEEEechHhhCCCcEEecCCeEEE
Confidence 999998 67888999999988884
No 338
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=87.99 E-value=2.5 Score=46.64 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=27.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
-++|++++|+|||..++-.+.+..... +.+++|+..-
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E 51 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLE 51 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCC
Confidence 478899999999998777776665432 5678888743
No 339
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.95 E-value=3.4 Score=43.85 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=20.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L 148 (1165)
+..|+.++.|+|||..+...+...+
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4588999999999998777766654
No 340
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.89 E-value=0.74 Score=52.00 Aligned_cols=75 Identities=21% Similarity=0.226 Sum_probs=43.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHH--HHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACH--NIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~--kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
+||.+|||||||-+ +..|+.++.......+|=|=.-.+-+.+-.+.+- +-.|. -+.......+.+++.++
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~-------dT~sF~~aLraALReDP 199 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGR-------DTLSFANALRAALREDP 199 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcc-------cHHHHHHHHHHHhhcCC
Confidence 67889999999976 4556777777777777665555454444333331 11121 11222234455666777
Q ss_pred cEEEE
Q 037446 204 RVFFV 208 (1165)
Q Consensus 204 dIlVa 208 (1165)
|||+.
T Consensus 200 DVIlv 204 (353)
T COG2805 200 DVILV 204 (353)
T ss_pred CEEEE
Confidence 77664
No 341
>PRK09183 transposase/IS protein; Provisional
Probab=87.85 E-value=2.9 Score=47.09 Aligned_cols=42 Identities=31% Similarity=0.491 Sum_probs=28.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q 168 (1165)
.++++.+|+|+|||..+......... .+.+++++. ...|..+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEe-HHHHHHH
Confidence 68999999999999887766554433 344666654 3355544
No 342
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=87.75 E-value=2.4 Score=58.33 Aligned_cols=58 Identities=26% Similarity=0.178 Sum_probs=41.1
Q ss_pred CChHHHHHHHHHhhc---CCeEEEcCCCchHHHHHHHHH--HHHHHhCCCCeEEEEecChhHH
Q 037446 109 PVRDYQFAITKTALF---SNTLVALPTGLGKTLIAAVVI--YNFFRWFPDGKIVFAAPSRPLV 166 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~---rnvIl~a~TGsGKTL~a~lpi--l~~L~~~~~~rvLILvPtr~La 166 (1165)
.|.+-|.+++..++. +-++|.+..|+|||.+.-..+ +..+....+.+++.++||-.-+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa 897 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAV 897 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHH
Confidence 578889999998875 468889999999998743322 2222233456788999995444
No 343
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=87.66 E-value=2.5 Score=48.31 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=18.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
++++.+++|+|||.++-..+..+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999876554443
No 344
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.65 E-value=3.1 Score=51.45 Aligned_cols=96 Identities=14% Similarity=0.098 Sum_probs=72.7
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHH
Q 037446 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEK 517 (1165)
Q Consensus 438 ~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~ 517 (1165)
.+.++|-...+..+...+. .+.++||.++++.-+..+++.|++... ..+..+|| +++..+|.++..+
T Consensus 5 ~TGsGKT~v~l~~i~~~l~----~g~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs--------~~~~~er~~~~~~ 71 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLA----LGKSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHS--------GLSDSEKLQAWRK 71 (505)
T ss_pred CCCCCHHHHHHHHHHHHHH----cCCeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEEC--------CCCHHHHHHHHHH
Confidence 4567788877777766654 477999999999999999999976521 44555555 7899999999999
Q ss_pred HhcCCceEEEEcccccccccccCCCEEEEe
Q 037446 518 FRAGGYNVIVATSIGEEGLDIMEVDLVICF 547 (1165)
Q Consensus 518 Fr~g~~~VLVATda~~eGLDIp~vd~VI~~ 547 (1165)
..+|+.+|+|+|..+- =+.+.++..||.-
T Consensus 72 ~~~g~~~IVVGTrsal-f~p~~~l~lIIVD 100 (505)
T TIGR00595 72 VKNGEILVVIGTRSAL-FLPFKNLGLIIVD 100 (505)
T ss_pred HHcCCCCEEECChHHH-cCcccCCCEEEEE
Confidence 9999999999996532 2456667777753
No 345
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=87.35 E-value=7.8 Score=46.75 Aligned_cols=131 Identities=12% Similarity=0.167 Sum_probs=68.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec--ChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP--SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP--tr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~ 202 (1165)
-+++++++|+|||-++.-.+..+.. .+.++++|+- .|.-+.+|.+.+.+..+.+ +..........
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~--~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp---~~~~~~~~dp~-------- 168 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQR--KGFKPCLVCADTFRAGAFDQLKQNATKARIP---FYGSYTESDPV-------- 168 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEEcCcccchhHHHHHHHHhhccCCe---EEeecCCCCHH--------
Confidence 3678899999999887776655432 2446665543 3455556655555444433 22222211110
Q ss_pred ccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcC-CCCCeEEEEccCCCCChHHHHHHH
Q 037446 203 KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQHII 278 (1165)
Q Consensus 203 ~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~-~~~~riL~LSATP~~~~~~l~~Li 278 (1165)
......+.. .....+++||||=+-+...+......+..+... .+...++.++||...........|
T Consensus 169 --------~i~~~~l~~--~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 169 --------KIASEGVEK--FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred --------HHHHHHHHH--HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 001111111 112457889999887765433344444444432 233456778888765543333333
No 346
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=87.25 E-value=0.16 Score=53.72 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=54.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChH---HHHhhcCCc
Q 037446 127 LVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPT---KRASFWKTK 203 (1165)
Q Consensus 127 Il~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~---~~~~l~~~~ 203 (1165)
+|.++-|-|||-+..+.+..++... ..+++|.+|+.+=+....+.+.+-+....... ..... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~-~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~ 74 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG-KIRILVTAPSPENVQTLFEFAEKGLKALGYKE-----EKKKRIGQIIKLRFNKQ 74 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------EEEE-SS--S-HHHHHCC-------------------------------CC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc-CceEEEecCCHHHHHHHHHHHHhhcccccccc-----ccccccccccccccccc
Confidence 5789999999988777665554332 25799999997766655554433222110000 00000 000011246
Q ss_pred cEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCC
Q 037446 204 RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267 (1165)
Q Consensus 204 dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP 267 (1165)
.|-+..|+.+... ....|+||||||=.+-- ..+..++.. ...+.||.|.
T Consensus 75 ~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp~-----p~L~~ll~~---~~~vv~stTi 123 (177)
T PF05127_consen 75 RIEFVAPDELLAE-------KPQADLLIVDEAAAIPL-----PLLKQLLRR---FPRVVFSTTI 123 (177)
T ss_dssp C--B--HHHHCCT-----------SCEEECTGGGS-H-----HHHHHHHCC---SSEEEEEEEB
T ss_pred eEEEECCHHHHhC-------cCCCCEEEEechhcCCH-----HHHHHHHhh---CCEEEEEeec
Confidence 7788888877542 22458999999987742 344555533 2347777776
No 347
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.22 E-value=3.5 Score=52.14 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=18.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
-.|+.++.|+|||.++.+.+..+
T Consensus 41 ayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 41 AYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999776666554
No 348
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.09 E-value=2.5 Score=51.95 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=18.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.|+.++.|+|||.++.+.+..+
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999887776554
No 349
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=87.05 E-value=1.5 Score=56.41 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=18.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil 145 (1165)
.++|+.+|+|+|||..+.....
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999988766553
No 350
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=87.00 E-value=2.1 Score=50.08 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=19.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L 148 (1165)
+-.|+.++.|.||+..+...+..++
T Consensus 25 HA~Lf~G~~G~Gk~~lA~~~A~~Ll 49 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRWLM 49 (334)
T ss_pred eEEeeECCCCCCHHHHHHHHHHHHc
Confidence 3477899999999998877766554
No 351
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=86.77 E-value=1.6 Score=59.73 Aligned_cols=120 Identities=12% Similarity=0.036 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeC
Q 037446 111 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTG 189 (1165)
Q Consensus 111 r~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G 189 (1165)
.+-|.+++. ..+++++|.|.-|||||.+.+--++.++..+ ...++|+|+=|+..+......+.+.+...- ..
T Consensus 3 t~~Q~~ai~-~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~------~~ 75 (1232)
T TIGR02785 3 TDEQWQAIY-TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKAL------QQ 75 (1232)
T ss_pred CHHHHHHHh-CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHH------hc
Confidence 345788887 3468999999999999999877777666433 235799999999999888888876543110 00
Q ss_pred CCC-hHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCc--cEEEEccccc
Q 037446 190 QIS-PTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYL--VCLVIDEAHR 237 (1165)
Q Consensus 190 ~~~-~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~--~lVVIDEAHr 237 (1165)
... ...+..+..-...-|+|...+...+.+.....-++ .+=|.||...
T Consensus 76 ~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 76 EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 001 11122222335677899998886655433322222 4556888875
No 352
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=86.65 E-value=3.9 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=19.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L 148 (1165)
-.|+.++.|+|||.++-..+..+.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhc
Confidence 478999999999998877666553
No 353
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=86.60 E-value=4.6 Score=43.20 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=58.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccE
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dI 205 (1165)
.++.+||.+|||...+--+..+.. .+.++++..|... ..++. ..+..-.|. +..-+
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~--~g~~v~vfkp~iD----------~R~~~--~~V~Sr~G~----------~~~A~ 62 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKE--AGMKVLVFKPAID----------TRYGV--GKVSSRIGL----------SSEAV 62 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHH--cCCeEEEEecccc----------ccccc--ceeeeccCC----------cccce
Confidence 468899999999876555554433 3567888888721 11111 111111121 22345
Q ss_pred EEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHc
Q 037446 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS 253 (1165)
Q Consensus 206 lVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~ 253 (1165)
+|-....+...+........ .++|.||||+-+.. ..-.++.++..
T Consensus 63 ~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~~--~~v~~l~~lad 107 (201)
T COG1435 63 VIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFDE--ELVYVLNELAD 107 (201)
T ss_pred ecCChHHHHHHHHhcccCCC-cCEEEEehhHhCCH--HHHHHHHHHHh
Confidence 56666677666654322222 78999999998876 34445555554
No 354
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=86.59 E-value=5 Score=46.54 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=20.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L 148 (1165)
+..|+.++.|+||+..+...+..++
T Consensus 27 ha~Lf~G~~G~Gk~~~A~~~a~~ll 51 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAALCFIEGLL 51 (314)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHc
Confidence 4688999999999988777666654
No 355
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=86.37 E-value=3.1 Score=48.64 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=18.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
..|+.+|.|+|||..+...+..+
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999998776665554
No 356
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=86.36 E-value=10 Score=44.15 Aligned_cols=121 Identities=24% Similarity=0.315 Sum_probs=63.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe-cC-hhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA-PS-RPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv-Pt-r~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~ 202 (1165)
-+++.+++|+|||.++...+..+.. .+++++++. .+ +.-+.++........+.+ +.....+.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~--~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~---~~~~~~~~----------- 179 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKA--QGKKVLLAAGDTFRAAAIEQLQVWGERVGVP---VIAQKEGA----------- 179 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHh--cCCeEEEEecCccchhhHHHHHHHHHHcCce---EEEeCCCC-----------
Confidence 3667899999999987776655432 345676664 33 333333333333333332 11111111
Q ss_pred ccEEEEcHH-HHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHc-------CCCCCeEEEEccCCCC
Q 037446 203 KRVFFVTPQ-VLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS-------VPVQLRILALTATPGS 269 (1165)
Q Consensus 203 ~dIlVaTpq-~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~-------~~~~~riL~LSATP~~ 269 (1165)
.|. .....+.. ....++++||||=+-++.........++.+.. ..+...++.++||...
T Consensus 180 ------dpa~~v~~~l~~--~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~ 246 (318)
T PRK10416 180 ------DPASVAFDAIQA--AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246 (318)
T ss_pred ------CHHHHHHHHHHH--HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh
Confidence 111 11111111 12366899999999988654344444444442 2233467899999643
No 357
>PRK04195 replication factor C large subunit; Provisional
Probab=86.34 E-value=4.3 Score=49.93 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=18.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+.+|+.+|+|+|||..+...+.+
T Consensus 40 ~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999887665544
No 358
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=86.31 E-value=2.1 Score=60.84 Aligned_cols=60 Identities=12% Similarity=0.021 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHhhc---CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHH
Q 037446 108 VPVRDYQFAITKTALF---SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ 169 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~---rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~ 169 (1165)
+.+.+-|.+++..++. +=.+|.+..|+|||.+.... ...+. ..+.++++++||-.-+...
T Consensus 428 ~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l-~~~~~-~~G~~V~~lAPTgrAA~~L 490 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLL-LHLAS-EQGYEIQIITAGSLSAQEL 490 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHH-HHHHH-hcCCeEEEEeCCHHHHHHH
Confidence 4677889999998876 34788899999999864433 33333 2467899999995544433
No 359
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=86.31 E-value=1.4 Score=46.71 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=29.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ 169 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~ 169 (1165)
+++++.+++|+|||..+...+.+.+. .+..++|+.-. +|+...
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~~~~-~L~~~l 90 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIR--KGYSVLFITAS-DLLDEL 90 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEHH-HHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEeecC-ceeccc
Confidence 68999999999999998888777765 34556665433 555443
No 360
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=86.26 E-value=2.4 Score=50.26 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=52.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCcc
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~d 204 (1165)
=+++.+++|+|||...+..+..... .+.+++|+.-. +-..|......++ +....... +...
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~--~g~~VlYvs~E-Es~~qi~~Ra~rl-g~~~~~l~-l~~e-------------- 144 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAK--RGGKVLYVSGE-ESPEQIKLRADRL-GISTENLY-LLAE-------------- 144 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEECC-cCHHHHHHHHHHc-CCCcccEE-EEcc--------------
Confidence 3778999999999987766655533 24688888765 4456666555553 43211111 1100
Q ss_pred EEEEcHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 205 IlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
...+.+...+. ..+.++||||+++.+.
T Consensus 145 ---~~le~I~~~i~-----~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 ---TNLEDILASIE-----ELKPDLVIIDSIQTVY 171 (372)
T ss_pred ---CcHHHHHHHHH-----hcCCcEEEEcchHHhh
Confidence 12234444333 2357899999999874
No 361
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=85.90 E-value=1.4 Score=51.11 Aligned_cols=65 Identities=20% Similarity=0.198 Sum_probs=40.7
Q ss_pred HHHHHHCCCCCCCCCCChHHHHHHHHHhhc--CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhH
Q 037446 94 IDAEAAKTWIYPVNVPVRDYQFAITKTALF--SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPL 165 (1165)
Q Consensus 94 l~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~--rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~L 165 (1165)
++.+...|+.. +.|.+.+..+.. .+++++++||+|||-..-..+.......+..++++|-.+.+|
T Consensus 124 l~~l~~~g~~~-------~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGIMT-------AAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCCCC-------HHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 34455555533 235666665543 789999999999996544443333223345678888877665
No 362
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=85.81 E-value=8.7 Score=43.63 Aligned_cols=120 Identities=21% Similarity=0.283 Sum_probs=62.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe-c-ChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA-P-SRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv-P-tr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~ 202 (1165)
-+++.+++|+|||.+++-.+..+.. .+.+++++. - .|.-+.++...+.+..+.+ + +......
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~--~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~---~--~~~~~~~--------- 137 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKK--QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVD---V--IKQKEGA--------- 137 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeE---E--EeCCCCC---------
Confidence 3667799999999988877765532 345676665 2 3333333433333333321 1 1111110
Q ss_pred ccEEEEcHHH-HHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcC-------CCCCeEEEEccCCC
Q 037446 203 KRVFFVTPQV-LEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV-------PVQLRILALTATPG 268 (1165)
Q Consensus 203 ~dIlVaTpq~-L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~-------~~~~riL~LSATP~ 268 (1165)
.|.. +...+.. ....++++||||=+-+...+......++.+... .....++.++||-.
T Consensus 138 ------dp~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~ 203 (272)
T TIGR00064 138 ------DPAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG 203 (272)
T ss_pred ------CHHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC
Confidence 0111 1111111 123568999999998876543344444444421 14456788888853
No 363
>PRK06904 replicative DNA helicase; Validated
Probab=85.76 E-value=5.6 Score=48.75 Aligned_cols=111 Identities=15% Similarity=0.097 Sum_probs=60.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHH-HHhCCCCceEEEEeC-CCChHHHHhhc---
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACH-NIVGIPQEWTIDMTG-QISPTKRASFW--- 200 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~-kl~g~~~~~v~~l~G-~~~~~~~~~l~--- 200 (1165)
+||+|.+|.|||..++-.+.+.... .+.+++|+..- -=..|+...+- ...+.+... ...| .....++..+.
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~-~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~--i~~g~~l~~~e~~~~~~a~ 299 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMA-SEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTK--IRTGQNLDQQDWAKISSTV 299 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHH--hccCCCCCHHHHHHHHHHH
Confidence 6778999999999776555554322 24567776554 44556655543 333333211 1134 34444432211
Q ss_pred ----CCccEEE-----EcHHHHHHHHHcCccCCCCccEEEEcccccccC
Q 037446 201 ----KTKRVFF-----VTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 201 ----~~~dIlV-----aTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
....+.| .|+..+.....+-......+++||||=.+.+..
T Consensus 300 ~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 300 GMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 2344555 355555544432111123588999999888753
No 364
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=85.72 E-value=5.6 Score=46.36 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=20.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L 148 (1165)
+-.|+.++.|.|||..+...+..++
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHc
Confidence 3578999999999998877766554
No 365
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=85.63 E-value=0.48 Score=49.82 Aligned_cols=42 Identities=14% Similarity=0.055 Sum_probs=29.5
Q ss_pred hcCCccEEEEcHHHHHHHHHcCccC--CCCccEEEEcccccccC
Q 037446 199 FWKTKRVFFVTPQVLEKDIQSGTCL--MKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 199 l~~~~dIlVaTpq~L~~~l~~~~~~--l~~~~lVVIDEAHrl~~ 240 (1165)
....++|||+++..|.+......+. ..+-.+|||||||.+-+
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 3456899999999998765443332 23446899999999965
No 366
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=85.33 E-value=3 Score=50.81 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=19.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L 148 (1165)
..|+.++.|+|||.++...+..++
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc
Confidence 478999999999999888776654
No 367
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=85.27 E-value=9.1 Score=43.02 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=56.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHH-hCCCCceEEEEeCCCChHHH----Hh
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNI-VGIPQEWTIDMTGQISPTKR----AS 198 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl-~g~~~~~v~~l~G~~~~~~~----~~ 198 (1165)
.-++|.+++|+|||..+...+.+.... .+.+++|+.-- .-..+..+.+... .+.... .....-....... ..
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E-~~~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 107 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLE-EPVVRTARRLLGQYAGKRLH-LPDTVFIYTLEEFDAAFDE 107 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEcc-cCHHHHHHHHHHHHhCCCcc-cCCccccccHHHHHHHHHH
Confidence 457889999999998777666655432 24578887643 3344555444332 232210 0000001111111 11
Q ss_pred hcCCccEEEE------cHHHHHHHHHcCccCCCCccEEEEcccccccC
Q 037446 199 FWKTKRVFFV------TPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 199 l~~~~dIlVa------Tpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
+.....+++. |.+.+...+... ......++||||..+.+..
T Consensus 108 ~~~~~~l~i~d~~~~~~~~~i~~~i~~~-~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 108 FEGTGRLFMYDSFGEYSMDSVLEKVRYM-AVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred hcCCCcEEEEcCCCccCHHHHHHHHHHH-HhcCCceEEEECCHHHHhc
Confidence 1111223222 445555544321 1223578999999998864
No 368
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=85.23 E-value=1.7 Score=50.56 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=34.7
Q ss_pred HHHHHHHHhhc--CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHH
Q 037446 113 YQFAITKTALF--SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLV 166 (1165)
Q Consensus 113 yQ~eal~~ll~--rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La 166 (1165)
.|.+.+..+.. .++|++++||||||-..-..+.......+..+++.|=.+.+|.
T Consensus 132 ~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 132 AQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccc
Confidence 45566665554 7899999999999986543332222223455777777676653
No 369
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=85.22 E-value=4.3 Score=56.63 Aligned_cols=60 Identities=25% Similarity=0.115 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHhhc---CCeEEEcCCCchHHHHHHHHH--HHHHHhCCCCeEEEEecChhHHH
Q 037446 108 VPVRDYQFAITKTALF---SNTLVALPTGLGKTLIAAVVI--YNFFRWFPDGKIVFAAPSRPLVM 167 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~---rnvIl~a~TGsGKTL~a~lpi--l~~L~~~~~~rvLILvPtr~La~ 167 (1165)
+.|.+-|.+++..++. +-++|.+..|+|||.+.-..+ +..+....+.+++.++||-.-+.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk 1030 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVG 1030 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHH
Confidence 3578889999999886 457888999999998744332 22222223457888999954443
No 370
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=84.67 E-value=4.4 Score=52.52 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=20.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L 148 (1165)
.|.|+.+++|+|||..+-..+....
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999998776665543
No 371
>PRK08506 replicative DNA helicase; Provisional
Probab=84.46 E-value=5.7 Score=48.74 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=61.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHH-HHhCCCCceEEEEeCCCChHHHHhh-----
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACH-NIVGIPQEWTIDMTGQISPTKRASF----- 199 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~-kl~g~~~~~v~~l~G~~~~~~~~~l----- 199 (1165)
+||+|.+|.|||..++-.+.+... .+.+++|+..- .=..|+...+- ...+.+... ...|......+..+
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~--~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~--i~~~~l~~~e~~~~~~a~~ 269 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALN--QDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQN--LRTGDLDDDEWERLSDACD 269 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh--cCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHH--HhcCCCCHHHHHHHHHHHH
Confidence 677899999999988877776643 34567776544 44555555443 233433211 12344454444321
Q ss_pred -cCCccEEEE-----cHHHHHHHHHcCccCCCCccEEEEcccccccC
Q 037446 200 -WKTKRVFFV-----TPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 200 -~~~~dIlVa-----Tpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
+.+..+.|- |+..+...+.+-......+++||||=.+.+..
T Consensus 270 ~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 270 ELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 223445542 45555544432111123588999999988753
No 372
>PRK10263 DNA translocase FtsK; Provisional
Probab=84.40 E-value=2.5 Score=56.41 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=26.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhC-CCC-eEEEEecC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWF-PDG-KIVFAAPS 162 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~-~~~-rvLILvPt 162 (1165)
++||++.||+|||.+.-..|+.++... +.. ++++|=|.
T Consensus 1012 HLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK 1051 (1355)
T PRK10263 1012 HLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPK 1051 (1355)
T ss_pred cEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCC
Confidence 689999999999998777777766543 333 34444444
No 373
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=84.34 E-value=4.4 Score=51.65 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=74.2
Q ss_pred hccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC--CccceeeecccccccCCCCCHHHHH
Q 037446 435 ISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD--LVKATEFIGQSSGKASKGQSQKVQQ 512 (1165)
Q Consensus 435 ~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~--~i~~~~l~G~~~g~~~ggms~~eR~ 512 (1165)
+.....++|-...+-.+...+. .+.+++|-++++.-|..+++.+++... .+++..++| +++..+|.
T Consensus 261 l~g~TGSGKT~va~l~il~~~~----~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg--------~~~~~~r~ 328 (630)
T TIGR00643 261 LQGDVGSGKTLVAALAMLAAIE----AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTG--------SLKGKRRK 328 (630)
T ss_pred EECCCCCcHHHHHHHHHHHHHH----cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEec--------CCCHHHHH
Confidence 3445678888655444434333 477999999999999998888876521 166666666 78889999
Q ss_pred HHHHHHhcCCceEEEEccc-ccccccccCCCEEEE
Q 037446 513 AVLEKFRAGGYNVIVATSI-GEEGLDIMEVDLVIC 546 (1165)
Q Consensus 513 ~il~~Fr~g~~~VLVATda-~~eGLDIp~vd~VI~ 546 (1165)
.+++...+|+..|+|+|.. +...+.+..+.+||.
T Consensus 329 ~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 329 ELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred HHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 9999999999999999975 344577777887775
No 374
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=84.22 E-value=3.9 Score=49.36 Aligned_cols=31 Identities=32% Similarity=0.508 Sum_probs=22.7
Q ss_pred HHHHHhhc-CCeEEEcCCCchHHHHHHHHHHH
Q 037446 116 AITKTALF-SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 116 eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.++..+.. +++|+.+++|+|||..+...+..
T Consensus 186 ~l~~~L~~~~~iil~GppGtGKT~lA~~la~~ 217 (459)
T PRK11331 186 TILKRLTIKKNIILQGPPGVGKTFVARRLAYL 217 (459)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 44444443 89999999999999987655443
No 375
>PRK11823 DNA repair protein RadA; Provisional
Probab=84.15 E-value=3.1 Score=50.67 Aligned_cols=89 Identities=16% Similarity=0.229 Sum_probs=53.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCcc
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~d 204 (1165)
-+++.+++|+|||...+..+..... .+.+++|+.-. +-..|+.....+ ++..... ..+...
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~--~g~~vlYvs~E-es~~qi~~ra~r-lg~~~~~-l~~~~e-------------- 142 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAA--AGGKVLYVSGE-ESASQIKLRAER-LGLPSDN-LYLLAE-------------- 142 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcc-ccHHHHHHHHHH-cCCChhc-EEEeCC--------------
Confidence 3678999999999987776665542 35688998865 556676666555 3432111 111110
Q ss_pred EEEEcHHHHHHHHHcCccCCCCccEEEEcccccccC
Q 037446 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 205 IlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
...+.+...+. -.+.++||||+.+.+..
T Consensus 143 ---~~l~~i~~~i~-----~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 143 ---TNLEAILATIE-----EEKPDLVVIDSIQTMYS 170 (446)
T ss_pred ---CCHHHHHHHHH-----hhCCCEEEEechhhhcc
Confidence 11233333332 23578999999997753
No 376
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=84.08 E-value=5.1 Score=46.78 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=18.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L 148 (1165)
.|+.+|.|+|||..+...+..++
T Consensus 31 ~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 31 YLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 58999999999988777665554
No 377
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=84.07 E-value=14 Score=40.75 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=34.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
-+++.+++|+|||..+...++..+. .+.+++|+.=- +-..+..+.+..
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e-~~~~~~~~~~~~ 74 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTE-NTSKSYLKQMES 74 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcC-CCHHHHHHHHHH
Confidence 4778899999999988877776654 35677777765 444566666655
No 378
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=83.96 E-value=1.1 Score=48.91 Aligned_cols=16 Identities=38% Similarity=0.335 Sum_probs=13.3
Q ss_pred CCccEEEEcccccccC
Q 037446 225 KYLVCLVIDEAHRATG 240 (1165)
Q Consensus 225 ~~~~lVVIDEAHrl~~ 240 (1165)
...+++||||+..+-.
T Consensus 61 ~~~~~liiDE~~~~~~ 76 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPP 76 (234)
T ss_pred CcCCEEEEeccccCCh
Confidence 3588999999998864
No 379
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=83.95 E-value=2.6 Score=48.91 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=31.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q 168 (1165)
-++|.++.|+|||..++..+.+... .+++++||-.-..+-.+
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~--~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV 98 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEcccchhHHH
Confidence 3678999999999998887777654 35788888766554443
No 380
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=83.67 E-value=8.3 Score=42.59 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=33.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
.-+++.+++|+|||..+.-.+...+. ++.++++++.. +-..+..+.+..
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~--~g~~~~yi~~e-~~~~~~~~~~~~ 73 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQ--NGYSVSYVSTQ-LTTTEFIKQMMS 73 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh--CCCcEEEEeCC-CCHHHHHHHHHH
Confidence 45788999999999987666666544 34678888854 434455555544
No 381
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=83.54 E-value=5.1 Score=47.93 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=18.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil 145 (1165)
.|+|+.+|+|+|||.+|.....
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~ 231 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSP 231 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhH
Confidence 7999999999999977665433
No 382
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=83.37 E-value=2.7 Score=54.35 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=19.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.+.|+.+++|+|||.++-..+...
T Consensus 208 ~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999876665544
No 383
>PHA00012 I assembly protein
Probab=82.74 E-value=6.5 Score=45.37 Aligned_cols=26 Identities=31% Similarity=0.187 Sum_probs=21.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhC
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWF 151 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~ 151 (1165)
.++.+..|+|||+.++.-|...+..+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 47889999999999988777776543
No 384
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=82.72 E-value=4.3 Score=48.54 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=18.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+++|+.+|+|+|||+++-..+.+
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHH
Confidence 57999999999999987665543
No 385
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=82.68 E-value=11 Score=39.36 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=22.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
+++.+++|+|||..+...+..+... +.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEE
Confidence 5778999999999987776654332 34555444
No 386
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=82.53 E-value=8.7 Score=46.24 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=42.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHh
Q 037446 127 LVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIV 177 (1165)
Q Consensus 127 Il~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~ 177 (1165)
.+.+=.|||||.+.++-+.++-..+|+.+++|.+=|+.|+.+...-+.+++
T Consensus 180 rIrGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 180 RIRGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred hhhcccCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 455678999999988877777777888899999999999999887776654
No 387
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.53 E-value=1 Score=51.14 Aligned_cols=24 Identities=46% Similarity=0.556 Sum_probs=20.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.|+++.+|||||||+.+...+..+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~L 121 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKIL 121 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHh
Confidence 689999999999999988766543
No 388
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=82.40 E-value=2.7 Score=48.35 Aligned_cols=51 Identities=29% Similarity=0.371 Sum_probs=33.7
Q ss_pred HHHHHHHhhc--CCeEEEcCCCchHHHHHHHHHHHHHHh-CCCCeEEEEecChhH
Q 037446 114 QFAITKTALF--SNTLVALPTGLGKTLIAAVVIYNFFRW-FPDGKIVFAAPSRPL 165 (1165)
Q Consensus 114 Q~eal~~ll~--rnvIl~a~TGsGKTL~a~lpil~~L~~-~~~~rvLILvPtr~L 165 (1165)
|.+.+..+.. .+++++++||+|||-..-..+ ..+.. .+..++++|=.+.+|
T Consensus 121 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~-~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 121 QRDVLREAVLARKNILVVGGTGSGKTTLANALL-AEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHH-HHhhccCCCceEEEECCchhh
Confidence 3344444443 789999999999998754433 44333 345688888777665
No 389
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=82.39 E-value=4.2 Score=45.86 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=19.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.++++.+|.|+|||-.+.+.+.++
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHh
Confidence 469999999999998776665543
No 390
>CHL00095 clpC Clp protease ATP binding subunit
Probab=82.24 E-value=7.7 Score=51.00 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
++.|+.+++|+|||.++-..+...
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999887766554
No 391
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=82.08 E-value=2.4 Score=52.03 Aligned_cols=116 Identities=19% Similarity=0.240 Sum_probs=60.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
+-.+..++-|+|||-++=+.+..+ ... ++ |+-+=| .....|+.+.......++.+.+....
T Consensus 39 hAYlfsG~RGvGKTt~Ari~Akal-NC~-~~------~~~ePC-~~C~~Ck~I~~g~~~DviEiDaASn~---------- 99 (515)
T COG2812 39 HAYLFSGPRGVGKTTIARILAKAL-NCE-NG------PTAEPC-GKCISCKEINEGSLIDVIEIDAASNT---------- 99 (515)
T ss_pred hhhhhcCCCCcCchhHHHHHHHHh-cCC-CC------CCCCcc-hhhhhhHhhhcCCcccchhhhhhhcc----------
Confidence 457889999999999877766554 221 11 221222 22334444332222333333332221
Q ss_pred cEEEEcHHHHHHHHHcC--ccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEc
Q 037446 204 RVFFVTPQVLEKDIQSG--TCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264 (1165)
Q Consensus 204 dIlVaTpq~L~~~l~~~--~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LS 264 (1165)
..+-+....+.- .-...++++.||||+|.+.. +.|...++.+-.-+....+|+.|
T Consensus 100 -----gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-~afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 100 -----GVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-QAFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred -----ChHHHHHHHHHhccCCccccceEEEEecHHhhhH-HHHHHHhcccccCccCeEEEEec
Confidence 112222222221 11245789999999999976 47866666665545554444433
No 392
>PF05729 NACHT: NACHT domain
Probab=82.03 E-value=7.3 Score=39.55 Aligned_cols=43 Identities=14% Similarity=0.072 Sum_probs=28.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCC---eEEEEecChhHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDG---KIVFAAPSRPLVMQ 168 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~---rvLILvPtr~La~Q 168 (1165)
++|.++.|+|||......+..+....... .+++....+.+..+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS 48 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence 68899999999998877776665544332 34555555455443
No 393
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=81.92 E-value=5.4 Score=42.29 Aligned_cols=111 Identities=15% Similarity=0.030 Sum_probs=56.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCcc-
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR- 204 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~d- 204 (1165)
.++.+||++|||...+--+..+-. .+.+++++-|...- + .+. . .+.-..+... .+.
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~~~--~~~~v~~~kp~~D~---------R-~~~--~-~I~s~~g~~~--------~~~~ 60 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRYEI--AGKKVLVFKPAIDT---------R-YGE--D-KIVSHDGISL--------EAIV 60 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH--TT-EEEEEEESTSC---------C-CCS--S-EEEHTTSCEE--------EEES
T ss_pred EEEECCcCChhHHHHHHHHHHHHh--CCCeEEEEEecccC---------c-CCC--C-eEEecCCCcc--------cccc
Confidence 467899999999876555543322 45789999998320 0 110 0 1110100000 000
Q ss_pred EEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCC
Q 037446 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267 (1165)
Q Consensus 205 IlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP 267 (1165)
..+.+...+.. ....++++|+|||||-+.. ...+.++.+.......-+-||-.+-
T Consensus 61 ~~~~~~~~~~~------~~~~~~dvI~IDEaQFf~~--~i~~l~~~~~~~g~~Vi~~GL~~df 115 (176)
T PF00265_consen 61 DPIDNLFEIID------ILENDYDVIGIDEAQFFDE--QIVQLVEILANKGIPVICAGLDTDF 115 (176)
T ss_dssp SEESSGGGGGG------GCCTTCSEEEESSGGGSTT--THHHHHHHHHHTT-EEEEEEESB-T
T ss_pred cchhhHHHHHH------HhccCCCEEEEechHhhHH--HHHHHHHHHHhCCCeEEEEeeCCcc
Confidence 01111111111 1223389999999999873 5556666666655555555665554
No 394
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=81.60 E-value=2.2 Score=46.76 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=32.9
Q ss_pred HHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 119 KTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 119 ~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
+.+..+++.|.+.||+|||......+.+.+. ..+.++||+=|.
T Consensus 19 ~~l~~~H~~I~G~TGsGKS~~~~~ll~~l~~-~~~~~~ii~D~~ 61 (229)
T PF01935_consen 19 NKLFNRHIAIFGTTGSGKSNTVKVLLEELLK-KKGAKVIIFDPH 61 (229)
T ss_pred HHhccceEEEECCCCCCHHHHHHHHHHHHHh-cCCCCEEEEcCC
Confidence 3455689999999999999998888777763 345567777666
No 395
>PRK14873 primosome assembly protein PriA; Provisional
Probab=81.09 E-value=10 Score=48.50 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=77.1
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHh
Q 037446 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519 (1165)
Q Consensus 440 ~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr 519 (1165)
.+.|-+..++++.+.+. .+..+||.++....+..+.+.|+.......+.. +|++++..+|.+...+..
T Consensus 170 GSGKTevyl~~i~~~l~----~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~--------lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 170 GEDWARRLAAAAAATLR----AGRGALVVVPDQRDVDRLEAALRALLGAGDVAV--------LSAGLGPADRYRRWLAVL 237 (665)
T ss_pred CCcHHHHHHHHHHHHHH----cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEE--------ECCCCCHHHHHHHHHHHh
Confidence 46899999999988776 688999999999999999999987642123333 455899999999999999
Q ss_pred cCCceEEEEcccccccccccCCCEEEEecc
Q 037446 520 AGGYNVIVATSIGEEGLDIMEVDLVICFDA 549 (1165)
Q Consensus 520 ~g~~~VLVATda~~eGLDIp~vd~VI~~D~ 549 (1165)
+|+.+|+|.|..+ .=.-+++...||..+-
T Consensus 238 ~G~~~IViGtRSA-vFaP~~~LgLIIvdEE 266 (665)
T PRK14873 238 RGQARVVVGTRSA-VFAPVEDLGLVAIWDD 266 (665)
T ss_pred CCCCcEEEEccee-EEeccCCCCEEEEEcC
Confidence 9999999999763 3355666777877554
No 396
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=81.02 E-value=3.2 Score=48.18 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=32.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ 169 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~ 169 (1165)
-+.|.++.|+|||..++..+.+... .+++++||..-..+-.++
T Consensus 57 iteI~Gp~GsGKTtLal~~~~~~~~--~g~~~vyId~E~~~~~~~ 99 (325)
T cd00983 57 IIEIYGPESSGKTTLALHAIAEAQK--LGGTVAFIDAEHALDPVY 99 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEECccccHHHHH
Confidence 3678999999999988887776644 357899998876666543
No 397
>PRK09354 recA recombinase A; Provisional
Probab=80.71 E-value=4.1 Score=47.77 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=32.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q 168 (1165)
-+.|.++.|+|||..++..+.+... .+++++||..-.++-..
T Consensus 62 IteI~G~~GsGKTtLal~~~~~~~~--~G~~~~yId~E~s~~~~ 103 (349)
T PRK09354 62 IVEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV 103 (349)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchHHH
Confidence 3668999999999998888877654 36789988887666643
No 398
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=80.52 E-value=5.3 Score=46.25 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=29.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACH 174 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~ 174 (1165)
...|+++|.|+|||-.+-+.+... ..+.-+++=+.-|.+-+.+....|+
T Consensus 163 pSmIlWGppG~GKTtlArlia~ts--k~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTS--KKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhc--CCCceEEEEEeccccchHHHHHHHH
Confidence 358999999999998776655432 1112245555555444444444443
No 399
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=80.24 E-value=25 Score=42.65 Aligned_cols=55 Identities=24% Similarity=0.372 Sum_probs=32.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEE-ecC-hhHHHHHHHHHHHHhCCC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA-APS-RPLVMQQIEACHNIVGIP 180 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLIL-vPt-r~La~Q~~~e~~kl~g~~ 180 (1165)
-+++++++|+|||.+++-.+..+... .+.++++| +-+ |.-+.++.+.+....+.+
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~-~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp 157 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK-QGKKVLLVACDLYRPAAIEQLKVLGQQVGVP 157 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh-CCCeEEEEeccccchHHHHHHHHHHHhcCCc
Confidence 47788999999999988877665322 23455444 332 333444444443334543
No 400
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=79.97 E-value=7.2 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=18.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+++.+|||+|||..+-..+..+
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999999887665544
No 401
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=79.64 E-value=3.9 Score=47.64 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=18.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+++++.+|+|+|||..+...+..
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHH
Confidence 47999999999999887655443
No 402
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=78.91 E-value=6 Score=44.30 Aligned_cols=112 Identities=16% Similarity=0.102 Sum_probs=62.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhh------
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASF------ 199 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l------ 199 (1165)
++|++.+|.|||..++-.+.+..... +..++|++.--.--.=+.+.+....+.+... ...|.....++..+
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~SlEm~~~~l~~R~la~~s~v~~~~--i~~g~l~~~e~~~~~~~~~~ 98 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSLEMSEEELAARLLARLSGVPYNK--IRSGDLSDEEFERLQAAAEK 98 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEESSS-HHHHHHHHHHHHHTSTHHH--HHCCGCHHHHHHHHHHHHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHhhcchhhh--hhccccCHHHHHHHHHHHHH
Confidence 77889999999998888887776543 3678888875222221223333334443211 11233333332221
Q ss_pred cCCccEEE-E----cHHHHHHHHHcCccCCCCccEEEEcccccccC
Q 037446 200 WKTKRVFF-V----TPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 200 ~~~~dIlV-a----Tpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
.....++| . |++.+...+..-......+++||||=.|.+..
T Consensus 99 l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 99 LSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred HhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 12333443 3 45566555543222226789999999998876
No 403
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=78.61 E-value=7.2 Score=55.74 Aligned_cols=58 Identities=17% Similarity=0.108 Sum_probs=40.4
Q ss_pred CCChHHHHHHHHHhhc---CCeEEEcCCCchHHHHHH---HHHHHHHHhCCCCeEEEEecChhHH
Q 037446 108 VPVRDYQFAITKTALF---SNTLVALPTGLGKTLIAA---VVIYNFFRWFPDGKIVFAAPSRPLV 166 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~---rnvIl~a~TGsGKTL~a~---lpil~~L~~~~~~rvLILvPtr~La 166 (1165)
..+.+-|.+++..++. +-++|.+..|+|||.... -++.+.+. ..+.+++.++||-.-+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~-~~g~~v~glApT~~Aa 1081 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE-SEQLQVIGLAPTHEAV 1081 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH-hcCCeEEEEeChHHHH
Confidence 3578889999998765 346778999999998752 22333332 2345789999995444
No 404
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=78.49 E-value=6.8 Score=42.65 Aligned_cols=40 Identities=20% Similarity=0.087 Sum_probs=28.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhC----CCCeEEEEecChh
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWF----PDGKIVFAAPSRP 164 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~----~~~rvLILvPtr~ 164 (1165)
=+.|.+++|+|||..+...+...+... ...++++|.....
T Consensus 21 v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 21 ITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred EEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence 377889999999998887766654321 1267888877643
No 405
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=78.45 E-value=7.4 Score=49.70 Aligned_cols=132 Identities=19% Similarity=0.204 Sum_probs=75.5
Q ss_pred HHHHHHHhhc---CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHh---CCCCceEEEE
Q 037446 114 QFAITKTALF---SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIV---GIPQEWTIDM 187 (1165)
Q Consensus 114 Q~eal~~ll~---rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~---g~~~~~v~~l 187 (1165)
|.+.+..+.. +-++|.|+-|=|||.+..+.+..........+++|.+|+.+=++..++-+.+-+ |.........
T Consensus 219 ~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~ 298 (758)
T COG1444 219 ALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDA 298 (758)
T ss_pred HHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCcccccccc
Confidence 5556666665 347778999999999988777443333224589999999876666555444322 3221111111
Q ss_pred eCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCC
Q 037446 188 TGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267 (1165)
Q Consensus 188 ~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP 267 (1165)
.|..... .-+...|=+.+|.... ..-++||||||=-+-- ..+.++.. ..+.+.||.|.
T Consensus 299 ~g~~~~~----~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIpl-----plL~~l~~---~~~rv~~sTTI 356 (758)
T COG1444 299 LGEIREV----SGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIPL-----PLLHKLLR---RFPRVLFSTTI 356 (758)
T ss_pred ccceeee----cCCceeEEeeCcchhc----------ccCCEEEEehhhcCCh-----HHHHHHHh---hcCceEEEeee
Confidence 1111110 0012345566665543 1158999999987743 22344443 23458899997
No 406
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=78.24 E-value=8.3 Score=46.27 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=18.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil 145 (1165)
+.+++.+|+|+|||+.+-..+.
T Consensus 180 kgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999998755443
No 407
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=78.20 E-value=8.8 Score=46.33 Aligned_cols=111 Identities=15% Similarity=0.063 Sum_probs=55.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHH-HHHhCCCCceEEEEeCCCChHHHHhh----
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEAC-HNIVGIPQEWTIDMTGQISPTKRASF---- 199 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~-~kl~g~~~~~v~~l~G~~~~~~~~~l---- 199 (1165)
=++|++.+|+|||..++-.+.+.... .+.+++|+.-- .=..|+...+ ....+.+... ...|......+..+
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~-~g~~v~~fSlE-m~~~~l~~Rl~~~~~~v~~~~--~~~~~l~~~~~~~~~~~~ 271 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALR-EGKPVLFFSLE-MSAEQLGERLLASKSGINTGN--IRTGRFNDSDFNRLLNAV 271 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECC-CCHHHHHHHHHHHHcCCCHHH--HhcCCCCHHHHHHHHHHH
Confidence 36788999999999887776655322 34567777632 3344444333 2223332111 12344333332211
Q ss_pred --cCCccEEEE-----cHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 200 --WKTKRVFFV-----TPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 200 --~~~~dIlVa-----Tpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
+.+.++.|. |.+.+...+..-......+++||||=.|.+.
T Consensus 272 ~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 272 DRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred HHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 123344442 3344444333211111247788888777665
No 408
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.18 E-value=12 Score=44.37 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=17.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+..|+.++.|+|||..+...+..
T Consensus 40 ~~~L~~G~~G~GKt~~a~~la~~ 62 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARILARK 62 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999876665433
No 409
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=78.13 E-value=2.1 Score=49.06 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=17.0
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpi 144 (1165)
.++++.+|.|+|||..+...+
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia 51 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIA 51 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468999999999998765544
No 410
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=78.09 E-value=6.2 Score=48.65 Aligned_cols=23 Identities=43% Similarity=0.537 Sum_probs=18.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+++|+.+|+|+|||+++-..+.+
T Consensus 217 ~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred cceEEECCCCCcHHHHHHHHHHh
Confidence 67999999999999976655544
No 411
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=77.87 E-value=9.6 Score=43.16 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=34.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNI 176 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl 176 (1165)
+.+|+.+|.|+||++.+-..+-+. ..+.|-+-...|+..|.-+-.++
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEA------nSTFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhc------CCceEEeehHHHHHHHhccHHHH
Confidence 568999999999998765554432 35677777778998887666554
No 412
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=77.87 E-value=6.7 Score=50.19 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=77.3
Q ss_pred ccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHH
Q 037446 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVL 515 (1165)
Q Consensus 436 ~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il 515 (1165)
...+.+.|.+..++.+.+.+. .|..+||-++-......+...|+.... .++ +.+|+++++.+|....
T Consensus 223 ~GvTGSGKTEvYl~~i~~~L~----~GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v--------~vlHS~Ls~~er~~~W 289 (730)
T COG1198 223 DGVTGSGKTEVYLEAIAKVLA----QGKQVLVLVPEIALTPQLLARFKARFG-AKV--------AVLHSGLSPGERYRVW 289 (730)
T ss_pred eCCCCCcHHHHHHHHHHHHHH----cCCEEEEEeccccchHHHHHHHHHHhC-CCh--------hhhcccCChHHHHHHH
Confidence 345679999999999999887 789999999999988888888876631 343 3455699999999999
Q ss_pred HHHhcCCceEEEEcccccccccccCCCEEEE
Q 037446 516 EKFRAGGYNVIVATSIGEEGLDIMEVDLVIC 546 (1165)
Q Consensus 516 ~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~ 546 (1165)
.+.++|+.+|+|.|..+ .=.-++++..||.
T Consensus 290 ~~~~~G~~~vVIGtRSA-lF~Pf~~LGLIIv 319 (730)
T COG1198 290 RRARRGEARVVIGTRSA-LFLPFKNLGLIIV 319 (730)
T ss_pred HHHhcCCceEEEEechh-hcCchhhccEEEE
Confidence 99999999999998653 2344556666665
No 413
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=77.69 E-value=6.1 Score=51.31 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=18.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+.+++.+|+|+|||+.+-..+.+
T Consensus 488 ~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999987665544
No 414
>PRK09165 replicative DNA helicase; Provisional
Probab=77.57 E-value=13 Score=45.99 Aligned_cols=110 Identities=16% Similarity=0.112 Sum_probs=60.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhC-------------CCCeEEEEecChhHHHHHHHHHHH-HhCCCCceEEEEeCCC
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWF-------------PDGKIVFAAPSRPLVMQQIEACHN-IVGIPQEWTIDMTGQI 191 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~-------------~~~rvLILvPtr~La~Q~~~e~~k-l~g~~~~~v~~l~G~~ 191 (1165)
+||++.+|+|||..++-.+.+..... .+.+++|+..- .=..|+...+-. ..+++... ...|..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE-Ms~~ql~~R~la~~s~v~~~~--i~~~~l 296 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE-MSAEQLATRILSEQSEISSSK--IRRGKI 296 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHH--HhcCCC
Confidence 67899999999998777666554321 23567777544 445565555433 23443211 123444
Q ss_pred ChHHHHhh------cCCccEEEE-----cHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 192 SPTKRASF------WKTKRVFFV-----TPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 192 ~~~~~~~l------~~~~dIlVa-----Tpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
...++..+ .....+.|- |++.+...+.+-. .-..+++||||=.|.+.
T Consensus 297 ~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~-~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 297 SEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLK-RQHGLDLLVVDYLQLIR 354 (497)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchHhcc
Confidence 44433322 123345543 4555554443211 12358899999999775
No 415
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=77.47 E-value=15 Score=46.11 Aligned_cols=98 Identities=16% Similarity=0.292 Sum_probs=73.1
Q ss_pred hhccCCCChHHH-HHHHHHHHhhcccCCCCCeEEEEeCchHHH----HHHHHHHHhcCCCccceeeecccccccCCCCCH
Q 037446 434 SISHGAQSPKLS-KMLEVLVDHFKTKDPKHSRVIIFSNFRGSV----RDIMNALATIGDLVKATEFIGQSSGKASKGQSQ 508 (1165)
Q Consensus 434 ~~~~~~~s~Kl~-~LlelL~~~~~~~~~~~~kvIVF~~sr~~a----e~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~ 508 (1165)
.+.....|.|-- +++.++. .+. .|.++.+-++|---| +.+.+.|...| +++..++| .+..
T Consensus 287 LlQGDVGSGKTvVA~laml~-ai~----~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~--i~V~lLtG--------~~kg 351 (677)
T COG1200 287 LLQGDVGSGKTVVALLAMLA-AIE----AGYQAALMAPTEILAEQHYESLRKWLEPLG--IRVALLTG--------SLKG 351 (677)
T ss_pred HhccCcCCCHHHHHHHHHHH-HHH----cCCeeEEeccHHHHHHHHHHHHHHHhhhcC--CeEEEeec--------ccch
Confidence 344455666653 3444443 333 588999999995544 45555556567 88888887 6889
Q ss_pred HHHHHHHHHHhcCCceEEEEccc-ccccccccCCCEEEE
Q 037446 509 KVQQAVLEKFRAGGYNVIVATSI-GEEGLDIMEVDLVIC 546 (1165)
Q Consensus 509 ~eR~~il~~Fr~g~~~VLVATda-~~eGLDIp~vd~VI~ 546 (1165)
++|.++++...+|+++++|.|-+ +...+++.++-+||.
T Consensus 352 k~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 352 KARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred hHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEE
Confidence 99999999999999999999976 568899999988885
No 416
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=77.40 E-value=9.1 Score=42.37 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=26.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH----------hCCCCeEEEEec
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFR----------WFPDGKIVFAAP 161 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~----------~~~~~rvLILvP 161 (1165)
.+++++.|+|||..++-.++.... ...++++||+.-
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~ 49 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA 49 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC
Confidence 689999999999988877765431 124567888883
No 417
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=77.32 E-value=4.5 Score=52.41 Aligned_cols=68 Identities=19% Similarity=0.245 Sum_probs=52.3
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccc
Q 037446 461 KHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIG 532 (1165)
Q Consensus 461 ~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~ 532 (1165)
.+.++++.++|+.-+...++.|........ .+. ... .+|+.|+.+++++++++|.+|.++|||+|..+
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~--~~~-~~~-~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAG--SLD-VLV-VYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcC--Ccc-eee-eeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 468999999999999999999887642111 010 001 15678999999999999999999999999754
No 418
>PRK04132 replication factor C small subunit; Provisional
Probab=77.25 E-value=10 Score=49.48 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=25.2
Q ss_pred CccEEEEcccccccCccchHHHHHHHHcCC-CCCeEEEEccCC
Q 037446 226 YLVCLVIDEAHRATGNYAYCTAIRELMSVP-VQLRILALTATP 267 (1165)
Q Consensus 226 ~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~-~~~riL~LSATP 267 (1165)
++.+|||||||++.. .-+..+.+++.-+ ...+ +.|.+++
T Consensus 630 ~~KVvIIDEaD~Lt~--~AQnALLk~lEep~~~~~-FILi~N~ 669 (846)
T PRK04132 630 SFKIIFLDEADALTQ--DAQQALRRTMEMFSSNVR-FILSCNY 669 (846)
T ss_pred CCEEEEEECcccCCH--HHHHHHHHHhhCCCCCeE-EEEEeCC
Confidence 468999999999975 4445556666543 4444 4444554
No 419
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=76.85 E-value=12 Score=49.51 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
++.|+.+++|+|||.++-..+...
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999998876655443
No 420
>PF11942 Spt5_N: Spt5 transcription elongation factor, acidic N-terminal; InterPro: IPR022581 This is the very acidic N-terminal domain of the early transcription elongation factor Spt5 []. The Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The actual function of this N-terminal domain is not known although it is dispensable for binding to Spt4 [], nor is it essential for RNA polymerase II binding [].
Probab=76.78 E-value=1.1 Score=42.68 Aligned_cols=35 Identities=34% Similarity=0.643 Sum_probs=19.4
Q ss_pred hhhhhhccccccccCCCcccccCCCCCCCccccCC
Q 037446 1087 YIEEEAEVSSEAEVSDDEEDDEDNNSYDDSFIDDR 1121 (1165)
Q Consensus 1087 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1121 (1165)
||++||||.++.|..++++++..+-.=++.||++.
T Consensus 1 Fid~EAeVDddeEEeee~ed~~~~~~~~~~~~~~~ 35 (97)
T PF11942_consen 1 FIDDEAEVDDDEEEEEEDEDEADEIGEEDDEIEDA 35 (97)
T ss_pred CchhhcccCCcccccccccccchhhhccccccccc
Confidence 99999999887554442222222222234566553
No 421
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=76.74 E-value=7 Score=46.61 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=16.8
Q ss_pred CCeEEEcCCCchHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVV 143 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lp 143 (1165)
+.++|.+++|+|||..+...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i 188 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKI 188 (415)
T ss_pred CEEEEECCCCCChhHHHHHH
Confidence 67999999999999875553
No 422
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=76.49 E-value=9.6 Score=45.06 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=18.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+++++.+|+|+|||..+-..+.+
T Consensus 157 ~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 56999999999999887665443
No 423
>PRK10867 signal recognition particle protein; Provisional
Probab=76.23 E-value=27 Score=42.35 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=24.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
-+++++++|+|||.+++-.+..+... .+.++++|+
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~ 136 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVA 136 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEE
Confidence 36788999999999988877765443 244555443
No 424
>PHA00350 putative assembly protein
Probab=75.99 E-value=11 Score=45.07 Aligned_cols=29 Identities=28% Similarity=0.248 Sum_probs=20.2
Q ss_pred eEEEcCCCchHHHHHHH-HHHHHHHhCCCCeEE
Q 037446 126 TLVALPTGLGKTLIAAV-VIYNFFRWFPDGKIV 157 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~l-pil~~L~~~~~~rvL 157 (1165)
.++.+..|+|||+.++. .++..++ .+|.+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk---~GR~V 33 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK---DGRKV 33 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHH---CCCEE
Confidence 46789999999998876 3544443 34544
No 425
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=75.79 E-value=8.9 Score=45.59 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=16.8
Q ss_pred cCCeEEEcCCCchHHHHHHH
Q 037446 123 FSNTLVALPTGLGKTLIAAV 142 (1165)
Q Consensus 123 ~rnvIl~a~TGsGKTL~a~l 142 (1165)
+++++|.++.|+|||..+..
T Consensus 169 GQR~lIvgppGvGKTTLaK~ 188 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQN 188 (416)
T ss_pred CceEEEeCCCCCChhHHHHH
Confidence 37899999999999976555
No 426
>PF12846 AAA_10: AAA-like domain
Probab=75.78 E-value=3.4 Score=46.63 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=27.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
+++++.+.||+|||......+.+.+.. +..++|+=|.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~--g~~~~i~D~~ 38 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRR--GPRVVIFDPK 38 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHc--CCCEEEEcCC
Confidence 578999999999999888766666553 3456666555
No 427
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=75.65 E-value=21 Score=40.86 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=28.4
Q ss_pred CCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCCC
Q 037446 225 KYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPG 268 (1165)
Q Consensus 225 ~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP~ 268 (1165)
..++++|||+||.|... .....++.+-.-+....+|++|..+.
T Consensus 94 ~~~kv~ii~~ad~mt~~-AaNaLLK~LEEPp~~~~fiL~~~~~~ 136 (290)
T PRK05917 94 SPYKIYIIHEADRMTLD-AISAFLKVLEDPPQHGVIILTSAKPQ 136 (290)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHhhcCCCCeEEEEEeCChh
Confidence 56889999999999862 34344444445555566666666654
No 428
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=75.46 E-value=9.9 Score=45.34 Aligned_cols=86 Identities=20% Similarity=0.127 Sum_probs=47.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
..+++.++||+||++.+...- .+.........|-+.--++...-. ... +||.. -+.++|.....
T Consensus 102 ~~vLi~GetGtGKel~A~~iH--~~s~r~~~~PFI~~NCa~~~en~~-~~e-LFG~~---kGaftGa~~~k--------- 165 (403)
T COG1221 102 LPVLIIGETGTGKELFARLIH--ALSARRAEAPFIAFNCAAYSENLQ-EAE-LFGHE---KGAFTGAQGGK--------- 165 (403)
T ss_pred CcEEEecCCCccHHHHHHHHH--HhhhcccCCCEEEEEHHHhCcCHH-HHH-Hhccc---cceeecccCCc---------
Confidence 689999999999999876643 222221122233333322222222 122 67753 45566632211
Q ss_pred cEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccC
Q 037446 204 RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 204 dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
.+.+...+=+.+.+||.|++--
T Consensus 166 ---------------~Glfe~A~GGtLfLDEI~~LP~ 187 (403)
T COG1221 166 ---------------AGLFEQANGGTLFLDEIHRLPP 187 (403)
T ss_pred ---------------CchheecCCCEEehhhhhhCCH
Confidence 1223334457899999999965
No 429
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=75.07 E-value=7.7 Score=42.50 Aligned_cols=39 Identities=21% Similarity=0.127 Sum_probs=27.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhC----CCCeEEEEecCh
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWF----PDGKIVFAAPSR 163 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~----~~~rvLILvPtr 163 (1165)
-+.|.++.|+|||..+...+....... ...++++|.--.
T Consensus 21 i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 21 ITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred EEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 367899999999998877765543221 135788887543
No 430
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=74.96 E-value=8.7 Score=42.79 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=25.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ 168 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q 168 (1165)
-+.+.++.|||||+..- .+.+.+. .+..++++.|...+..+
T Consensus 53 ~~~vtGevGsGKTv~~R-al~~s~~--~d~~~~v~i~~~~~s~~ 93 (269)
T COG3267 53 ILAVTGEVGSGKTVLRR-ALLASLN--EDQVAVVVIDKPTLSDA 93 (269)
T ss_pred eEEEEecCCCchhHHHH-HHHHhcC--CCceEEEEecCcchhHH
Confidence 46788999999999877 4444433 23344445555444433
No 431
>KOG4156 consensus Claspin, protein mediating phosphorylation and activation of Chk1 protein kinase in the DNA replication checkpoint response [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=74.81 E-value=0.63 Score=55.89 Aligned_cols=89 Identities=21% Similarity=0.314 Sum_probs=64.9
Q ss_pred chhhhhhcccCc-cccccccccCCC-ccccccCCCCCCCCcchhhhhhhhhccccccccCCCcccccCCCCCCCccccCC
Q 037446 1044 NSENMKENAVAP-VVNLARRFLGMS-PIQNKHGRGRKKPMDNMREYIEEEAEVSSEAEVSDDEEDDEDNNSYDDSFIDDR 1121 (1165)
Q Consensus 1044 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1121 (1165)
+-.+--|..-+| ..+|+|+-+... -...+|-|-|++| ++|.|+|+|||||-+.--|.||.|.+.-+-||.--|||-
T Consensus 1010 ~Ds~E~E~~ds~nD~~~eD~eDd~e~~~~~r~ek~Krqm--r~Rk~~eDEAevSGsDVGSEDE~~~Eei~E~EE~~~DeV 1087 (1329)
T KOG4156|consen 1010 FDSDEDEHSDSGNDLALEDHEDDDEEELLKRSEKLKRQM--RLRKYLEDEAEVSGSDVGSEDEYDGEEIDEYEEDVIDEV 1087 (1329)
T ss_pred ccccccccccCCCCCCcccccchHHHHHHHHHHHHHHHH--HHHHhhcchhhcccCccCccccccchhhhhhhccccccc
Confidence 334445555556 677877776544 2334456778888 999999999999999999999999999999999999986
Q ss_pred CCCccccccccccc
Q 037446 1122 MNPTATSTQAESSG 1135 (1165)
Q Consensus 1122 ~~~~~~~~~~~~~~ 1135 (1165)
..-- .--|+++-+
T Consensus 1088 ~~sD-eelq~Q~~K 1100 (1329)
T KOG4156|consen 1088 LPSD-EELQSQIKK 1100 (1329)
T ss_pred CCch-HHHHHHHHH
Confidence 5332 244554444
No 432
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=74.59 E-value=4.7 Score=44.10 Aligned_cols=51 Identities=27% Similarity=0.389 Sum_probs=35.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNI 176 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl 176 (1165)
.-++|.+++|+|||..++-.+++.+... +.++++++-. +-..+..+.+..+
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESS-S-HHHHHHHHHTT
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEec-CCHHHHHHHHHHc
Confidence 3588899999999998887777766541 3568888855 5567777777653
No 433
>PRK08006 replicative DNA helicase; Provisional
Probab=74.46 E-value=16 Score=44.80 Aligned_cols=110 Identities=17% Similarity=0.106 Sum_probs=57.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH-HhCCCCceEEEEeCCCChHHHHh------
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN-IVGIPQEWTIDMTGQISPTKRAS------ 198 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k-l~g~~~~~v~~l~G~~~~~~~~~------ 198 (1165)
+||++.+|.|||..++-.+.+.... .+.+++|+..- -=..|+...+-. ..+.+... ...|.....++..
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~-~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~~~~--i~~~~l~~~e~~~~~~a~~ 302 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAML-QDKPVLIFSLE-MPGEQIMMRMLASLSRVDQTR--IRTGQLDDEDWARISGTMG 302 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh-cCCeEEEEecc-CCHHHHHHHHHHHhcCCCHHH--hhcCCCCHHHHHHHHHHHH
Confidence 6778999999999877766665332 34567776544 334455544432 22332111 1134445444432
Q ss_pred -hcCCccEEEE-----cHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 199 -FWKTKRVFFV-----TPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 199 -l~~~~dIlVa-----Tpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
+.....+.|- |+..+.....+-......+++||||=.|.+.
T Consensus 303 ~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 303 ILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 1133445543 4444444332211111257889998887764
No 434
>PRK08760 replicative DNA helicase; Provisional
Probab=74.29 E-value=15 Score=45.06 Aligned_cols=109 Identities=17% Similarity=0.096 Sum_probs=59.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHh-CCCCceEEEEeCCCChHHHHhh-----
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIV-GIPQEWTIDMTGQISPTKRASF----- 199 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~-g~~~~~v~~l~G~~~~~~~~~l----- 199 (1165)
+||++.+|+|||..++-.+.+.... .+.+++|+..- .=..|+...+.... +.+... ...|.....++..+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~-~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~~--i~~g~l~~~e~~~~~~a~~ 307 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIK-SKKGVAVFSME-MSASQLAMRLISSNGRINAQR--LRTGALEDEDWARVTGAIK 307 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHh-cCCceEEEecc-CCHHHHHHHHHHhhCCCcHHH--HhcCCCCHHHHHHHHHHHH
Confidence 6778999999999887777655322 23467777554 44556666554432 222111 12344444433221
Q ss_pred -cCCccEEEE-----cHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 200 -WKTKRVFFV-----TPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 200 -~~~~dIlVa-----Tpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
..+..+.|- |++.+...+..-. ....+++||||=.+.+.
T Consensus 308 ~l~~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 308 MLKETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHhcCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcC
Confidence 123445443 4555554443211 12357899999888775
No 435
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=73.95 E-value=8.1 Score=47.73 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=18.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+++|+.+|+|+|||..+-..+..
T Consensus 89 ~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999987665443
No 436
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=73.80 E-value=26 Score=43.78 Aligned_cols=125 Identities=16% Similarity=0.181 Sum_probs=72.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHH----HHHhCCCCceEEEEeCCCChHHHHhhc
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEAC----HNIVGIPQEWTIDMTGQISPTKRASFW 200 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~----~kl~g~~~~~v~~l~G~~~~~~~~~l~ 200 (1165)
-.+..-|---|||-..+..|.-++....+-++.++++-+-.++-..+++ ++|++... +....
T Consensus 204 aTVFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~--vi~~k------------ 269 (668)
T PHA03372 204 ATVFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKH--TIENK------------ 269 (668)
T ss_pred ceEEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccc--eeeec------------
Confidence 3666779999999864443433444456678999999998777656554 56665332 11111
Q ss_pred CCccEEEEcHH-----HHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCC
Q 037446 201 KTKRVFFVTPQ-----VLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267 (1165)
Q Consensus 201 ~~~dIlVaTpq-----~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP 267 (1165)
+.-|.|.-|+ .+....+...+.-++++++++||||-+..+ .+..++--+ .....++|..|.|-
T Consensus 270 -~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~~-a~~tilgfm--~q~~~KiIfISS~N 337 (668)
T PHA03372 270 -DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKKD-AFNTILGFL--AQNTTKIIFISSTN 337 (668)
T ss_pred -CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCHH-HHHHhhhhh--cccCceEEEEeCCC
Confidence 1122222221 111122234455678999999999999863 442222222 23556778888774
No 437
>PRK05748 replicative DNA helicase; Provisional
Probab=73.78 E-value=13 Score=45.40 Aligned_cols=110 Identities=14% Similarity=0.045 Sum_probs=57.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHH-HHhCCCCceEEEEeCCCChHHHHhh-----
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACH-NIVGIPQEWTIDMTGQISPTKRASF----- 199 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~-kl~g~~~~~v~~l~G~~~~~~~~~l----- 199 (1165)
++|++.+|+|||..++-.+.+.... .+.+++|+..- .-..|+...+- ...+.+... ...|.....++..+
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~-~g~~v~~fSlE-ms~~~l~~R~l~~~~~v~~~~--i~~~~l~~~e~~~~~~a~~ 281 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATK-TDKNVAIFSLE-MGAESLVMRMLCAEGNIDAQR--LRTGQLTDDDWPKLTIAMG 281 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHh-CCCeEEEEeCC-CCHHHHHHHHHHHhcCCCHHH--hhcCCCCHHHHHHHHHHHH
Confidence 6788999999999877776664322 24467766544 55556665553 322322111 11344444333211
Q ss_pred -cCCccEEEE-----cHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 200 -WKTKRVFFV-----TPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 200 -~~~~dIlVa-----Tpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
..+..+.|- |+..+...+.+-......+++||||=.|.+.
T Consensus 282 ~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 282 SLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 123344442 4444544333211111257889998888774
No 438
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=73.72 E-value=6.7 Score=44.10 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=56.4
Q ss_pred HHHHhhc----CCe--EEEcCCCchHHHHHHHHHHHHHH----hCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEE
Q 037446 117 ITKTALF----SNT--LVALPTGLGKTLIAAVVIYNFFR----WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID 186 (1165)
Q Consensus 117 al~~ll~----rnv--Il~a~TGsGKTL~a~lpil~~L~----~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~ 186 (1165)
.+..+++ .+. =++++.|+|||-.++-.+..... .+.+++++||.-....-.+-..++.+.++..
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~------ 99 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLD------ 99 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-------
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccc------
Confidence 5556654 222 37899999999887666554332 1345689999766555444444443322211
Q ss_pred EeCCCChHHHHhhcCCccE-EEEcHHHHHHHHHc--CccCCCCccEEEEcccccc
Q 037446 187 MTGQISPTKRASFWKTKRV-FFVTPQVLEKDIQS--GTCLMKYLVCLVIDEAHRA 238 (1165)
Q Consensus 187 l~G~~~~~~~~~l~~~~dI-lVaTpq~L~~~l~~--~~~~l~~~~lVVIDEAHrl 238 (1165)
. ..+..+..+ -+.+.+.+...+.. ..+.-.++++||||-+=.+
T Consensus 100 ------~---~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 100 ------P---EEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp ------H---HHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred ------c---chhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHH
Confidence 1 111222111 12244555544432 1122356899999987654
No 439
>CHL00176 ftsH cell division protein; Validated
Probab=73.56 E-value=12 Score=47.66 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=18.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+++|+.+|+|+|||+.+-..+.+
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999987665543
No 440
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=73.16 E-value=14 Score=45.57 Aligned_cols=58 Identities=19% Similarity=0.086 Sum_probs=43.4
Q ss_pred HHHHHhhc------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHH
Q 037446 116 AITKTALF------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNI 176 (1165)
Q Consensus 116 eal~~ll~------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl 176 (1165)
..+..+++ .-++|.+++|+|||..++..+...+. .+.+++|++-- +-..|..+.++.+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~--~ge~~~y~s~e-Es~~~i~~~~~~l 313 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA--NKERAILFAYE-ESRAQLLRNAYSW 313 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEee-CCHHHHHHHHHHc
Confidence 35566665 24788999999999988888777654 34578888855 7778888888764
No 441
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=72.98 E-value=27 Score=40.58 Aligned_cols=122 Identities=23% Similarity=0.283 Sum_probs=70.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec--ChhHHHHHHHHHHHHhCCCCceEEEE-eCCCChHHHHhhcCC
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP--SRPLVMQQIEACHNIVGIPQEWTIDM-TGQISPTKRASFWKT 202 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP--tr~La~Q~~~e~~kl~g~~~~~v~~l-~G~~~~~~~~~l~~~ 202 (1165)
+++.+-.|+|||-+..-.+..+.. .+.++++.+- -|+=+..|.+.+.+-.|.+ ++.- .|..+.
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~--~g~~VllaA~DTFRAaAiEQL~~w~er~gv~---vI~~~~G~DpA--------- 207 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQ--QGKSVLLAAGDTFRAAAIEQLEVWGERLGVP---VISGKEGADPA--------- 207 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHH--CCCeEEEEecchHHHHHHHHHHHHHHHhCCe---EEccCCCCCcH---------
Confidence 567899999999988777766543 3455665543 2555666666665555643 2221 222221
Q ss_pred ccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCC------CCC-eEEEEccCCCCCh
Q 037446 203 KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP------VQL-RILALTATPGSKQ 271 (1165)
Q Consensus 203 ~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~------~~~-riL~LSATP~~~~ 271 (1165)
-|+ .+.+.. -.-+++|+|++|=|-|+-+....-..++++.+.. .+. -++.+=||-+++.
T Consensus 208 -aVa-------fDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna 273 (340)
T COG0552 208 -AVA-------FDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA 273 (340)
T ss_pred -HHH-------HHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH
Confidence 111 122221 1346689999999999987655655566665421 122 3445578886654
No 442
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=72.64 E-value=18 Score=38.01 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=34.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
++|.+++|||||..+...+.. .+.++++++-.+.+-..+.+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHHHHHHHHH
Confidence 578999999999887766543 346899998888886666666655
No 443
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=72.63 E-value=15 Score=45.71 Aligned_cols=70 Identities=26% Similarity=0.423 Sum_probs=52.7
Q ss_pred EEEEeCchHHHHHHHHHHHhcCC---CccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcc-----ccccc-
Q 037446 465 VIIFSNFRGSVRDIMNALATIGD---LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATS-----IGEEG- 535 (1165)
Q Consensus 465 vIVF~~sr~~ae~L~~~L~~~g~---~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATd-----a~~eG- 535 (1165)
+||+++||+-|..+++.+...+. .+++..++| |++...+...++ .| .+|||+|+ ...+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~G--------G~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~ 169 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYG--------GVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGK 169 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEEC--------CCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCC
Confidence 99999999999999999987643 245556665 777766665444 46 89999995 55666
Q ss_pred ccccCCCEEEE
Q 037446 536 LDIMEVDLVIC 546 (1165)
Q Consensus 536 LDIp~vd~VI~ 546 (1165)
+|+..+.++|.
T Consensus 170 l~l~~v~~lVl 180 (513)
T COG0513 170 LDLSGVETLVL 180 (513)
T ss_pred cchhhcCEEEe
Confidence 77888888775
No 444
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=72.53 E-value=16 Score=44.19 Aligned_cols=109 Identities=16% Similarity=0.069 Sum_probs=55.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHH-hCCCCceEEEEeCCCChHHHHhh-----
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNI-VGIPQEWTIDMTGQISPTKRASF----- 199 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl-~g~~~~~v~~l~G~~~~~~~~~l----- 199 (1165)
++|++.+|+|||..++-.+.+.... .+.+++|+..- .=..|..+.+... .+.+... ...|.....++..+
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~-~g~~vl~~SlE-m~~~~i~~R~~~~~~~v~~~~--~~~g~l~~~~~~~~~~a~~ 273 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIK-EGKPVAFFSLE-MSAEQLAMRMLSSESRVDSQK--LRTGKLSDEDWEKLTSAAG 273 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-CCCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHH--hccCCCCHHHHHHHHHHHH
Confidence 6788999999998877666665432 24467777654 4444554444332 2332111 12333333332111
Q ss_pred -cCCccEEE-----EcHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 200 -WKTKRVFF-----VTPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 200 -~~~~dIlV-----aTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
..+..+.| .|+..+...+..-. ....+++||||=.+.+.
T Consensus 274 ~l~~~~l~i~d~~~~~~~~i~~~i~~~~-~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 274 KLSEAPLYIDDTPGLTITELRAKARRLK-REHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchHhcC
Confidence 12233444 24444444333211 11236788888777664
No 445
>PRK10865 protein disaggregation chaperone; Provisional
Probab=72.51 E-value=13 Score=49.18 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.+.|+.+++|+|||.++-..+...
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999876665544
No 446
>PRK07004 replicative DNA helicase; Provisional
Probab=72.43 E-value=19 Score=44.14 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=59.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHH-HHhCCCCceEEEEeCCCChHHHHhh-----
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACH-NIVGIPQEWTIDMTGQISPTKRASF----- 199 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~-kl~g~~~~~v~~l~G~~~~~~~~~l----- 199 (1165)
+||++.+|+|||..++-.+.+.... .+..++|+..- -=..|+...+- ...+.+... ...|.....++..+
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~-~~~~v~~fSlE-M~~~ql~~R~la~~~~v~~~~--i~~g~l~~~e~~~~~~a~~ 291 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVE-YGLPVAVFSME-MPGTQLAMRMLGSVGRLDQHR--MRTGRLTDEDWPKLTHAVQ 291 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHH-cCCeEEEEeCC-CCHHHHHHHHHHhhcCCCHHH--HhcCCCCHHHHHHHHHHHH
Confidence 6778999999999877666554322 24456666443 44555554442 222222111 11355554444321
Q ss_pred -cCCccEEE-----EcHHHHHHHHHcCccCCCCccEEEEcccccccC
Q 037446 200 -WKTKRVFF-----VTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 200 -~~~~dIlV-----aTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
..+..+.| .|+..+.....+-......+++||||=.+.+..
T Consensus 292 ~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 292 KMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 23455665 244455443332111123478999999888863
No 447
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=72.14 E-value=14 Score=48.05 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=17.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+++.+|||+|||..+-..+..+
T Consensus 487 ~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 487 FLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred EEEECCCCccHHHHHHHHHHHh
Confidence 6899999999999877765543
No 448
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=71.30 E-value=8.1 Score=42.76 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=36.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
.-++|.+++|+|||..++-.+++.+. .+.+++|++-. +-..|..+.+..
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~--~ge~~lyvs~e-e~~~~i~~~~~~ 70 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGIYVALE-EHPVQVRRNMAQ 70 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEEee-CCHHHHHHHHHH
Confidence 35888999999999988777776653 35678888854 666676666655
No 449
>PRK05973 replicative DNA helicase; Provisional
Probab=71.18 E-value=7.8 Score=43.06 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=35.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNI 176 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl 176 (1165)
-++|.+++|+|||..++-.+.+.... +.+++|+.-- +=..|..+.+..+
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEe-CCHHHHHHHHHHc
Confidence 46889999999999988877776542 5578888655 3356666666653
No 450
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=71.12 E-value=13 Score=45.62 Aligned_cols=100 Identities=12% Similarity=-0.013 Sum_probs=75.5
Q ss_pred cCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHh----hc-CCcc
Q 037446 130 LPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRAS----FW-KTKR 204 (1165)
Q Consensus 130 a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~----l~-~~~d 204 (1165)
--.++||+-..++.+.+.+..+-.+.+||.+-+.+-+.|...++.. ++.+.+.+++|.....++.. ++ ....
T Consensus 364 elvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw 440 (593)
T KOG0344|consen 364 ELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHGERSQKQRDETMERFRIGKIW 440 (593)
T ss_pred hheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEecccchhHHHHHHHHHhccCee
Confidence 3468999999999999999888888899999998888888887762 45677889999977655432 22 2468
Q ss_pred EEEEcHHHHHHHHHcCccCCCCccEEEEcccccc
Q 037446 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRA 238 (1165)
Q Consensus 205 IlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl 238 (1165)
|+|||- .+.++ +.+.++.+||.+..-..
T Consensus 441 vLicTd-----ll~RG-iDf~gvn~VInyD~p~s 468 (593)
T KOG0344|consen 441 VLICTD-----LLARG-IDFKGVNLVINYDFPQS 468 (593)
T ss_pred EEEehh-----hhhcc-ccccCcceEEecCCCch
Confidence 999984 33333 68889999999655443
No 451
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=70.77 E-value=30 Score=43.43 Aligned_cols=85 Identities=14% Similarity=0.197 Sum_probs=55.5
Q ss_pred CCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHh----cCCceEEEEc--cccccc
Q 037446 462 HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR----AGGYNVIVAT--SIGEEG 535 (1165)
Q Consensus 462 ~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr----~g~~~VLVAT--da~~eG 535 (1165)
..-+++|.++-+....+.+.+.+.| +- ..+.|.....+-...+ -.++++.|. .|.-.+|+|+ --+++|
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~g--il-~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEG 702 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNG--IL-ARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEG 702 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcc--hH-HHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccc
Confidence 4679999999999999999988776 21 1222221111111112 355667665 3454577665 557899
Q ss_pred ccccC--CCEEEEeccCCC
Q 037446 536 LDIME--VDLVICFDANVS 552 (1165)
Q Consensus 536 LDIp~--vd~VI~~D~p~S 552 (1165)
||+.+ +++||..+.|..
T Consensus 703 INF~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 703 INFSDDLGRAVVVVGLPYP 721 (821)
T ss_pred cccccccccEEEEeecCCC
Confidence 99988 899999999853
No 452
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=70.67 E-value=40 Score=36.27 Aligned_cols=132 Identities=11% Similarity=-0.067 Sum_probs=63.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHH-HHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQ-QIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q-~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~ 202 (1165)
..+++...+|.|||-+++-.++..+.. +.+|+|+-=.+.-... -...+.++ +.+... ..|..-.-. ...
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~--G~~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~-~~g~~~~~~----~~~ 92 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGH--GKKVGVVQFIKGAWSTGERNLLEFG---GGVEFH-VMGTGFTWE----TQD 92 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHC--CCeEEEEEEecCCCccCHHHHHhcC---CCcEEE-ECCCCCccc----CCC
Confidence 678999999999999988877776543 4567766433322111 11122221 111111 112110000 000
Q ss_pred ccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCc--cchHHHHHHHHcCCCCCeEEEEccCC
Q 037446 203 KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN--YAYCTAIRELMSVPVQLRILALTATP 267 (1165)
Q Consensus 203 ~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~--~~~~~~l~~L~~~~~~~riL~LSATP 267 (1165)
..--.......+... ...+.-..+++||+||.=.+.+. -.-..++..|...+.. .-|.||+--
T Consensus 93 ~~e~~~~~~~~~~~a-~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~-~evVlTGR~ 157 (191)
T PRK05986 93 RERDIAAAREGWEEA-KRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGM-QHVVITGRG 157 (191)
T ss_pred cHHHHHHHHHHHHHH-HHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCC-CEEEEECCC
Confidence 000000011111111 12334567999999999988763 1233444444444444 447788864
No 453
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=70.32 E-value=12 Score=46.23 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=30.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
+.+|+.+|.|+|||+.+-..+.+. +.+++-+-.. +|...|.-+..+
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~-----~~~fi~v~~~-~l~sk~vGesek 322 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALES-----RSRFISVKGS-ELLSKWVGESEK 322 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhC-----CCeEEEeeCH-HHhccccchHHH
Confidence 479999999999999887766532 3344433333 676666555444
No 454
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=70.32 E-value=15 Score=48.33 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=19.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.|.|+.++.|+|||.++-..+...
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHH
Confidence 689999999999998876665543
No 455
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=69.95 E-value=11 Score=40.64 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=14.3
Q ss_pred CCeEEEcCCCchHHHHH
Q 037446 124 SNTLVALPTGLGKTLIA 140 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a 140 (1165)
+.++|.++-|+|||-..
T Consensus 21 ~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLL 37 (234)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEEcCCcCCHHHHH
Confidence 46888899999999853
No 456
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=69.55 E-value=18 Score=40.48 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=15.8
Q ss_pred hcCCeEEEcCCCchHHHHH
Q 037446 122 LFSNTLVALPTGLGKTLIA 140 (1165)
Q Consensus 122 l~rnvIl~a~TGsGKTL~a 140 (1165)
.++++++.++.|+|||..+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3478999999999999654
No 457
>PRK05636 replicative DNA helicase; Provisional
Probab=69.30 E-value=31 Score=42.78 Aligned_cols=109 Identities=12% Similarity=0.029 Sum_probs=55.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHH-HHhCCCCceEEEEeCCCChHHHHhh-----
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACH-NIVGIPQEWTIDMTGQISPTKRASF----- 199 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~-kl~g~~~~~v~~l~G~~~~~~~~~l----- 199 (1165)
+||++.+|+|||..++-.+...... .+.+++|+..- .-..|+...+- ...+++... ...|.....++..+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~-~g~~v~~fSlE-Ms~~ql~~R~ls~~s~v~~~~--i~~g~l~~~e~~~~~~a~~ 343 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIK-HNKASVIFSLE-MSKSEIVMRLLSAEAEVRLSD--MRGGKMDEDAWEKLVQRLG 343 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEee-CCHHHHHHHHHHHhcCCCHHH--HhcCCCCHHHHHHHHHHHH
Confidence 5778999999998777655554322 23466666332 33344433332 222222111 12344444444322
Q ss_pred -cCCccEEEE-----cHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 200 -WKTKRVFFV-----TPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 200 -~~~~dIlVa-----Tpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
..+..+.|- |...+.....+-. ....+++||||=.|.+.
T Consensus 344 ~l~~~~l~I~d~~~~ti~~I~~~~r~~~-~~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 344 KIAQAPIFIDDSANLTMMEIRSKARRLK-QKHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchHhcC
Confidence 223455553 3334443333211 12358899999999886
No 458
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=69.25 E-value=12 Score=43.40 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=27.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH----hCCCCeEEEEecChhH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFR----WFPDGKIVFAAPSRPL 165 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~----~~~~~rvLILvPtr~L 165 (1165)
+.|.++.|+|||..++..+..... ...+++++||.--..+
T Consensus 99 teI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f 142 (313)
T TIGR02238 99 TEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTF 142 (313)
T ss_pred EEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCC
Confidence 668999999999987766554321 1235689998865443
No 459
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=69.15 E-value=9.7 Score=42.72 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=38.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
+.++|.+++|+|||+.++-.++..+.. +.++++|+-. +...+..+.+..
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~-e~~~~l~~~~~~ 72 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTE-ESPEELLENARS 72 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEec-CCHHHHHHHHHH
Confidence 568899999999999888888777654 5568887766 777777777766
No 460
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=69.11 E-value=13 Score=45.38 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=53.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCcc
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~d 204 (1165)
-++|.+++|+|||..++..+.+... .+.++||+..- +-..|+.....++ +....... +.. .
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~--~g~kvlYvs~E-Es~~qi~~ra~rl-g~~~~~l~-~~~------------e-- 156 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAK--NQMKVLYVSGE-ESLQQIKMRAIRL-GLPEPNLY-VLS------------E-- 156 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh--cCCcEEEEECc-CCHHHHHHHHHHc-CCChHHeE-EcC------------C--
Confidence 3788999999999988777666543 24579998876 5556666655553 33211111 110 0
Q ss_pred EEEEcHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 205 IlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
.+.+.+...+.. .+.++||||....+.
T Consensus 157 ---~~~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 157 ---TNWEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred ---CCHHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 133444444432 346899999998764
No 461
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=69.03 E-value=32 Score=39.76 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=18.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
-.|+.++-|+|||..+...+..+
T Consensus 28 a~Lf~G~~G~Gk~~la~~~a~~l 50 (313)
T PRK05564 28 AHIIVGEDGIGKSLLAKEIALKI 50 (313)
T ss_pred eEEeECCCCCCHHHHHHHHHHHH
Confidence 35899999999999877766554
No 462
>CHL00095 clpC Clp protease ATP binding subunit
Probab=68.89 E-value=14 Score=48.74 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=18.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.++.+|||+|||..+-..+..+
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6889999999999877766554
No 463
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=68.84 E-value=11 Score=48.86 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=17.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.+++.+|||+|||..+-..+..
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~ 511 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999988665444
No 464
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=68.79 E-value=5.7 Score=42.77 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=25.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPL 165 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~L 165 (1165)
+++++|||+|||......+ ..+.....++++++--..++
T Consensus 4 ilI~GptGSGKTTll~~ll-~~~~~~~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMI-DYINKNKTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHHHHHHH-HHhhhcCCcEEEEEcCCccc
Confidence 6789999999998765433 33333334566766655443
No 465
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=68.69 E-value=10 Score=45.37 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=29.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~ 170 (1165)
+..|+.+|.|+|||+.+-..+.+. .....-|.|. +|+..|.
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~-----~atff~iSas-sLtsK~~ 227 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATES-----GATFFNISAS-SLTSKYV 227 (428)
T ss_pred chhheecCCCCchHHHHHHHHhhh-----cceEeeccHH-Hhhhhcc
Confidence 568999999999999876666553 4456667776 6665553
No 466
>PF09444 MRC1: MRC1-like domain; InterPro: IPR018564 This putative domain is found in the most conserved region in mediator of replication checkpoint protein 1. This protein is a component of the replisome and is required for Rad3-dependent activation of the checkpoint kinase Cds1 in response to replication fork arrest [].
Probab=68.53 E-value=1.5 Score=44.51 Aligned_cols=38 Identities=34% Similarity=0.597 Sum_probs=28.8
Q ss_pred chhhhhhhhhccccccc-----cCCCcccccCCCCCCCccccCC
Q 037446 1083 NMREYIEEEAEVSSEAE-----VSDDEEDDEDNNSYDDSFIDDR 1121 (1165)
Q Consensus 1083 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 1121 (1165)
.+..||++|||.|+|.+ +|++ ++|...+++...-|||.
T Consensus 5 ~~~~~vE~EAEESeDE~~GlGG~ddE-~sdd~~d~~le~MIDD~ 47 (145)
T PF09444_consen 5 GASEFVEEEAEESEDEYAGLGGADDE-DSDDEDDSELEKMIDDE 47 (145)
T ss_pred hHHHHHHHHHhcchhhhcCCCCCCcc-ccccchhHHHHHHhccc
Confidence 56889999999999653 3333 33566788888999995
No 467
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=68.52 E-value=8.3 Score=45.75 Aligned_cols=41 Identities=29% Similarity=0.284 Sum_probs=25.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChh
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~ 164 (1165)
..+||+++||||||-.....+.+.....+..+++.|=...+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E 190 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIE 190 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCch
Confidence 56889999999999875443333322233456666544433
No 468
>PRK06321 replicative DNA helicase; Provisional
Probab=68.37 E-value=24 Score=43.40 Aligned_cols=109 Identities=15% Similarity=0.041 Sum_probs=54.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH-HhCCCCceEEEEeCCCChHHHHhh-----
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN-IVGIPQEWTIDMTGQISPTKRASF----- 199 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k-l~g~~~~~v~~l~G~~~~~~~~~l----- 199 (1165)
+||++.+|.|||..++-.+.+.... .+.+++|+..- .=..|+...+-. ..+.+... ...|.....++..+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~-~g~~v~~fSLE-Ms~~ql~~Rlla~~s~v~~~~--i~~~~l~~~e~~~~~~a~~ 304 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQ-NRLPVGIFSLE-MTVDQLIHRIICSRSEVESKK--ISVGDLSGRDFQRIVSVVN 304 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEecc-CCHHHHHHHHHHhhcCCCHHH--hhcCCCCHHHHHHHHHHHH
Confidence 5778999999999877655543322 24567666543 334455444432 12232111 11344444443311
Q ss_pred -cCCccEEEE-----cHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 200 -WKTKRVFFV-----TPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 200 -~~~~dIlVa-----Tpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
..+..+.|- |.+.+......-. ....+++||||=.+.+.
T Consensus 305 ~l~~~~~~idd~~~~ti~~i~~~~r~~~-~~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 305 EMQEHTLLIDDQPGLKITDLRARARRMK-ESYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHcCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchHHcC
Confidence 123345453 4444544333211 12347788888777664
No 469
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=68.34 E-value=8.1 Score=48.62 Aligned_cols=68 Identities=19% Similarity=0.141 Sum_probs=53.2
Q ss_pred CCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC----CCCeEEEEecChhHHHHHHHHHHH
Q 037446 108 VPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF----PDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~----~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
.-+..-|..+....+. +=.|+.+|.|+|||++.+.++-.++... ..-++|++|=|...++|....+..
T Consensus 377 ~ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred eeecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 4556667777777666 6689999999999999988887777543 234799999999999998776654
No 470
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=68.23 E-value=15 Score=47.87 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=17.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil 145 (1165)
+.+++.+|+|+|||..+-..+.
T Consensus 213 ~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred ceEEEECCCCCChHHHHHHHHH
Confidence 6799999999999987655443
No 471
>PRK08840 replicative DNA helicase; Provisional
Probab=68.15 E-value=26 Score=43.01 Aligned_cols=110 Identities=17% Similarity=0.107 Sum_probs=57.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHH-HHhCCCCceEEEEeCCCChHHHHhh-----
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACH-NIVGIPQEWTIDMTGQISPTKRASF----- 199 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~-kl~g~~~~~v~~l~G~~~~~~~~~l----- 199 (1165)
+||++.+|.|||..++-.+.+.... .+.+++|+..- -=..|+...+- ...+..... ...|.....++..+
T Consensus 220 iviaarPg~GKTafalnia~~~a~~-~~~~v~~fSlE-Ms~~ql~~Rlla~~s~v~~~~--i~~~~l~~~e~~~~~~a~~ 295 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMD-QDKPVLIFSLE-MPAEQLMMRMLASLSRVDQTK--IRTGQLDDEDWARISSTMG 295 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHh-CCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHH--HhcCCCCHHHHHHHHHHHH
Confidence 6778999999999876665554322 24567776554 33555554443 333332211 12344444444332
Q ss_pred --cCCccEEEE-----cHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 200 --WKTKRVFFV-----TPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 200 --~~~~dIlVa-----Tpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
.....+.|- |+..+.....+-......+++||||=.|.+.
T Consensus 296 ~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 296 ILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 123345443 3444443332211111247899999888774
No 472
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=67.51 E-value=11 Score=41.13 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=35.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
.-+++.+++|+|||..+.-.+...+.. +.+++++.-. +-..+..+.+..
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e-~~~~~l~~~~~~ 65 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLE-EREERILGYAKS 65 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECC-CCHHHHHHHHHH
Confidence 347889999999998777666665543 5678888766 556677777665
No 473
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=67.33 E-value=12 Score=39.49 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=35.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhC--------CCCeEEEEecChhHHHHHHHHHHHHhC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWF--------PDGKIVFAAPSRPLVMQQIEACHNIVG 178 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~--------~~~rvLILvPtr~La~Q~~~e~~kl~g 178 (1165)
=+++.+++|+|||...+-.+....... ...++|++..-.. ..++.+.+..+..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 378899999999998887777766321 3457888877644 6677777877654
No 474
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=67.26 E-value=7.7 Score=50.17 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=54.5
Q ss_pred CCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 108 VPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
+++.+-|.+++..-.. +.+.+++|+|+|||-.+.-.+.....+.+..+++|+++...-..|..+.+.+
T Consensus 737 v~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~ 805 (1320)
T KOG1806|consen 737 VKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMA 805 (1320)
T ss_pred hccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHh
Confidence 3455568887766555 6789999999999999887777777778889999999998888887766655
No 475
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=67.15 E-value=32 Score=39.94 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=29.6
Q ss_pred HHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHc----CCCCCeEEEEccCC
Q 037446 212 VLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS----VPVQLRILALTATP 267 (1165)
Q Consensus 212 ~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~----~~~~~riL~LSATP 267 (1165)
.|+..+.++.-....--++|+||.|-... +...-.+-.+.. ...+.-++|+|--.
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~-h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAP-HSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhcccc-chhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 34444444333333334678899998765 343333333332 34566778887665
No 476
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=67.14 E-value=28 Score=44.32 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=41.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHH-----------HHHHHhCCCCceEEEEeCC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIE-----------ACHNIVGIPQEWTIDMTGQ 190 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~-----------e~~kl~g~~~~~v~~l~G~ 190 (1165)
.-.+|.+--|+|||.+....... -.++|..||+--+++... .+...||++...+-...|.
T Consensus 72 s~~~itG~AGsGKst~i~~l~~~-------l~cvitg~T~vAAqN~~~~L~~a~S~~~~TI~~~Fgf~~~HV~~~~~~ 142 (828)
T PHA03311 72 SVYLITGTAGAGKSTSIQTLNEN-------LDCVITGATRVAAQNLSAKLSRATSAYINTIFQEFGFKSNHVQAQLRK 142 (828)
T ss_pred EEEEEecCCCCChHHHHHHHHHh-------cCEEEEcchHHHHHhhhcccccccccccccHHHHhCCCccceeccccC
Confidence 35788899999999874443322 269999999666655544 4556778877766666664
No 477
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=66.49 E-value=13 Score=37.12 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=33.6
Q ss_pred EEcCCCchHHHHHHHHHHHHHHhCCCC-eE-----EEEecChhHHHHHHHHHHHHh
Q 037446 128 VALPTGLGKTLIAAVVIYNFFRWFPDG-KI-----VFAAPSRPLVMQQIEACHNIV 177 (1165)
Q Consensus 128 l~a~TGsGKTL~a~lpil~~L~~~~~~-rv-----LILvPtr~La~Q~~~e~~kl~ 177 (1165)
+.++||+|||+++-+.+.++...+... -+ ..-.|...-+.+-.++++++.
T Consensus 58 fHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I 113 (127)
T PF06309_consen 58 FHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWI 113 (127)
T ss_pred eecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHH
Confidence 459999999999999888876544332 22 334555566666666666653
No 478
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=66.28 E-value=9.9 Score=42.95 Aligned_cols=47 Identities=26% Similarity=0.305 Sum_probs=27.8
Q ss_pred HHHHHHHhhc---CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 114 QFAITKTALF---SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 114 Q~eal~~ll~---rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
|.+.+..+.. ..++++++||+|||-.....+.. +.. +..+++.|--.
T Consensus 68 ~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~-i~~-~~~~iitiEdp 117 (264)
T cd01129 68 NLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE-LNT-PEKNIITVEDP 117 (264)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh-hCC-CCCeEEEECCC
Confidence 5555555543 34789999999999875443333 221 23455555444
No 479
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=66.23 E-value=4.8 Score=49.21 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=38.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNI 176 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl 176 (1165)
.++++.++||+|||..+++|.+- .+ .+.++|.=|--+|.......+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll--~~--~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL--NY--PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH--hc--cCCEEEEECCCcHHHHHHHHHHHC
Confidence 36999999999999999888653 22 347899999999988777666553
No 480
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=65.24 E-value=22 Score=43.68 Aligned_cols=95 Identities=22% Similarity=0.356 Sum_probs=66.5
Q ss_pred CCCCCeEEEEeCchHHHHHHHHHHHhcCCCc--cceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEc-----cc
Q 037446 459 DPKHSRVIIFSNFRGSVRDIMNALATIGDLV--KATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT-----SI 531 (1165)
Q Consensus 459 ~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i--~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVAT-----da 531 (1165)
...+..+||-++||+-|..+...+...+... +...++| |.+...+..-++ . .+.|+||| |.
T Consensus 162 ~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyG--------G~~~~~Q~~~l~---~-gvdiviaTPGRl~d~ 229 (519)
T KOG0331|consen 162 RGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYG--------GAPKGPQLRDLE---R-GVDVVIATPGRLIDL 229 (519)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeC--------CCCccHHHHHHh---c-CCcEEEeCChHHHHH
Confidence 4457789999999999999999998875433 3667776 445444433332 2 46899999 56
Q ss_pred cccc-ccccCCCEEEE------ec--cCCCHHHHHHHHhhcCC
Q 037446 532 GEEG-LDIMEVDLVIC------FD--ANVSPLRMIQRMGRTGR 565 (1165)
Q Consensus 532 ~~eG-LDIp~vd~VI~------~D--~p~S~~~yiQriGRagR 565 (1165)
+++| +|+..|.++|. +| +-..+...+++++|..|
T Consensus 230 le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 230 LEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred HHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 6666 68888999885 22 23455667777777776
No 481
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=65.21 E-value=49 Score=37.02 Aligned_cols=20 Identities=45% Similarity=0.554 Sum_probs=17.1
Q ss_pred CCeEEEcCCCchHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVV 143 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lp 143 (1165)
+.+++.+|.|+|||+++-..
T Consensus 212 kgvllygppgtgktl~arav 231 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLCARAV 231 (435)
T ss_pred CceEEeCCCCCchhHHHHHH
Confidence 67999999999999986543
No 482
>PF13479 AAA_24: AAA domain
Probab=65.06 E-value=8.5 Score=41.91 Aligned_cols=78 Identities=18% Similarity=0.078 Sum_probs=47.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCcc
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~d 204 (1165)
+++|.++.|+|||..+... +++|||-.-.. .. .... ......
T Consensus 5 ~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g--------------~~-----------~~~~---~~~~~~ 46 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL----------PKPLFIDTENG--------------SD-----------SLKF---LDDGDV 46 (213)
T ss_pred EEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC--------------cc-----------chhh---hcCCCe
Confidence 5889999999999754332 56676655411 00 0000 001223
Q ss_pred EEEEcHHHHHHHHHcCccCCCCccEEEEcccccccC
Q 037446 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 205 IlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
|-|.+++.+...+..-.-....++.||||-+..+..
T Consensus 47 i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~~~ 82 (213)
T PF13479_consen 47 IPITSWEDFLEALDELEEDEADYDTIVIDSISWLED 82 (213)
T ss_pred eCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHHHH
Confidence 445588888886643112367899999999988743
No 483
>PRK04328 hypothetical protein; Provisional
Probab=64.84 E-value=12 Score=41.84 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=34.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
.-++|.+++|+|||..++-.+++.+.+ +.+++|+.=. +-..+..+.+..
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~e-e~~~~i~~~~~~ 72 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALE-EHPVQVRRNMRQ 72 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEee-CCHHHHHHHHHH
Confidence 347889999999999887777776543 4567777743 555555555555
No 484
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=64.82 E-value=12 Score=42.16 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=18.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil 145 (1165)
+++++.+++|+|||.++.....
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 7899999999999998766554
No 485
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=64.73 E-value=8.4 Score=43.35 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=27.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP 161 (1165)
-++|.+++|+|||..++-.+.+.+. .+.+++|+.-
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~--~Ge~vlyis~ 72 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQAS--RGNPVLFVTV 72 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh--CCCcEEEEEe
Confidence 3788999999999988877776544 3567888874
No 486
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=64.57 E-value=63 Score=38.89 Aligned_cols=123 Identities=19% Similarity=0.263 Sum_probs=72.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe--cChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA--PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv--Ptr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
+++++=-|+|||.++.-.+..+.. .+.++++++ ..|.-|..|.+.+..-.+.+ +.....+.++.
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La~q~~v~---~f~~~~~~~Pv--------- 168 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP---FFGSGTEKDPV--------- 168 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHH--cCCceEEEecccCChHHHHHHHHHHHHcCCc---eecCCCCCCHH---------
Confidence 677889999999999888776644 455666555 24566777777776655554 22211111111
Q ss_pred cEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCC-CeEEEEccCCCCCh
Q 037446 204 RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQ-LRILALTATPGSKQ 271 (1165)
Q Consensus 204 dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~-~riL~LSATP~~~~ 271 (1165)
+...+-+. .+....+|+||||=|-|+.-+...-..++.+...-.+ --++-+=|+.....
T Consensus 169 -------~Iak~al~--~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA 228 (451)
T COG0541 169 -------EIAKAALE--KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDA 228 (451)
T ss_pred -------HHHHHHHH--HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHH
Confidence 11122222 2234558999999999887654565666666654333 34455556655443
No 487
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=64.15 E-value=3.6 Score=49.02 Aligned_cols=47 Identities=21% Similarity=0.102 Sum_probs=36.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
++++.++||+|||..+++|.+.. -.+.++|+=|.-++........++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~----~~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT----WPGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc----CCCCEEEEccchhHHHHHHHHHHH
Confidence 47899999999999988775432 246789999998888776655554
No 488
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=63.95 E-value=12 Score=46.53 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=27.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVG 178 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g 178 (1165)
+.+.+.+++|+|||-..-+.+- +.....|.+ ......+..- .+.+++..+
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g--~~~p~~G~I--~i~g~~i~~~-~~~lr~~i~ 411 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTG--LLDPLQGEV--TLDGVSVSSL-QDELRRRIS 411 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCCCcEE--EECCEEhhhH-HHHHHhheE
Confidence 5688999999999975443321 112222333 3344444433 455555443
No 489
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.93 E-value=29 Score=41.85 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=33.4
Q ss_pred CCCCCChHHHHHHHHHhhc--------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 105 PVNVPVRDYQFAITKTALF--------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 105 Pt~IQlr~yQ~eal~~ll~--------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
|..+.-|.-+..++..+.. +..-|++.+|+|||.+.-......-.+.....+++|-=+
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~ 214 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCT 214 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeec
Confidence 4445555555555554443 467899999999998755444443333333233444333
No 490
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=63.65 E-value=9.7 Score=44.72 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=27.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLV 166 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La 166 (1165)
.+++|+++||||||-..-.. +..+. +..+++.|=.+.+|.
T Consensus 163 ~nilI~G~tGSGKTTll~aL-l~~i~--~~~rivtiEd~~El~ 202 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTL-ISAIP--PQERLITIEDTLELV 202 (344)
T ss_pred CeEEEECCCCccHHHHHHHH-HcccC--CCCCEEEECCCcccc
Confidence 78999999999999764333 23222 345777777776653
No 491
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=63.57 E-value=29 Score=40.18 Aligned_cols=39 Identities=26% Similarity=0.099 Sum_probs=27.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhC----CCCeEEEEecCh
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWF----PDGKIVFAAPSR 163 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~----~~~rvLILvPtr 163 (1165)
-+.|.+++|+|||..++-.+....... .+++++||.--.
T Consensus 104 vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 104 ITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred EEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 367899999999998887776654321 235788887543
No 492
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=63.57 E-value=11 Score=44.38 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=33.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNI 176 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl 176 (1165)
+.+|+.+|.|+|||+.+=..+-+. +.+.|=+-.-.|+..|.-+-.++
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc------~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC------GTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh------cCeEEEechhhhhhhhccchHHH
Confidence 679999999999999876555442 45666666667777765554443
No 493
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=63.50 E-value=9 Score=41.73 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=21.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecCh
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr 163 (1165)
.++.+|||+|||-.++..+... +--+|+....
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~------g~pvI~~Dri 35 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKT------GAPVISLDRI 35 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--------EEEEE-SG
T ss_pred EEEECCCCCChhHHHHHHHHHh------CCCEEEecce
Confidence 4788999999999988877654 3356666664
No 494
>PRK10865 protein disaggregation chaperone; Provisional
Probab=63.43 E-value=23 Score=46.91 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=18.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.+++.+|||+|||.++-.....+
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999886655443
No 495
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=63.21 E-value=16 Score=39.96 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=32.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
..+++.+++|+|||..+...+.+.+. ++.+++++.-- ....+..+....
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~~~--~g~~~~~is~e-~~~~~i~~~~~~ 69 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKGLR--DGDPVIYVTTE-ESRESIIRQAAQ 69 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEEcc-CCHHHHHHHHHH
Confidence 45788999999999887766665543 34577777653 445555544433
No 496
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=63.19 E-value=70 Score=33.39 Aligned_cols=32 Identities=19% Similarity=0.077 Sum_probs=23.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEE
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLIL 159 (1165)
+.|..++|.|||-+++-.++..... +.+++|+
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~--g~~v~~v 36 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGH--GYRVGVV 36 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEE
Confidence 4567888999999988877776543 5577774
No 497
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=63.16 E-value=28 Score=40.96 Aligned_cols=39 Identities=18% Similarity=0.031 Sum_probs=27.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH----hCCCCeEEEEecChh
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFR----WFPDGKIVFAAPSRP 164 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~----~~~~~rvLILvPtr~ 164 (1165)
+.|.++.|+|||..+.-.++.... ...+++++||.-...
T Consensus 129 tEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~t 171 (344)
T PLN03187 129 TEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGT 171 (344)
T ss_pred EEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCC
Confidence 568999999999987666544321 123468999987543
No 498
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=63.09 E-value=73 Score=34.92 Aligned_cols=135 Identities=12% Similarity=0.081 Sum_probs=70.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCC--------CceEEEEeCCCChHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIP--------QEWTIDMTGQISPTKRA 197 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~--------~~~v~~l~G~~~~~~~~ 197 (1165)
+++-++.|+|||+..+-.++-.+.. +.++.+++-- .-.......... ++.+ ...+..+.-
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~--g~~v~yvsTe-~T~refi~qm~s-l~ydv~~~~l~G~l~~~~~~~-------- 98 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMN--GYRVTYVSTE-LTVREFIKQMES-LSYDVSDFLLSGRLLFFPVNL-------- 98 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhC--CceEEEEEec-hhHHHHHHHHHh-cCCCchHHHhcceeEEEEecc--------
Confidence 6788999999999999888888753 3456655533 212222222222 1211 001111100
Q ss_pred hhcCCccEEEEcHH---HHHHHHHcCccCCCCccEEEEcccccccCccch---HHHHHHHHcCCCCCeEEEEccCCCCCh
Q 037446 198 SFWKTKRVFFVTPQ---VLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAY---CTAIRELMSVPVQLRILALTATPGSKQ 271 (1165)
Q Consensus 198 ~l~~~~dIlVaTpq---~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~---~~~l~~L~~~~~~~riL~LSATP~~~~ 271 (1165)
.=+...++ .+++.+.. .....+-+++|||=...+....+. .+.+..++++...-+++.+|+-|..-.
T Consensus 99 ------~~~~~~~~~~~~~L~~l~~-~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~ 171 (235)
T COG2874 99 ------EPVNWGRRSARKLLDLLLE-FIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSALD 171 (235)
T ss_pred ------cccccChHHHHHHHHHHHh-hHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChhhcC
Confidence 00111111 12222211 222455679999998887654322 233444455555668999999996555
Q ss_pred HHHHHHHH
Q 037446 272 QTIQHIID 279 (1165)
Q Consensus 272 ~~l~~Li~ 279 (1165)
++..-.++
T Consensus 172 e~~~~rir 179 (235)
T COG2874 172 EDVLTRIR 179 (235)
T ss_pred HHHHHHHH
Confidence 54444443
No 499
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=63.05 E-value=21 Score=48.67 Aligned_cols=100 Identities=14% Similarity=0.210 Sum_probs=64.5
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCC--ccceeeecccccccCCCCCHHHHHHHH
Q 037446 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVL 515 (1165)
Q Consensus 438 ~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~--i~~~~l~G~~~g~~~ggms~~eR~~il 515 (1165)
.+.++|-...+-++ .++. ..+.++||.++++.-+..+++.+...... +.... .+.+||+++..+|...+
T Consensus 101 pTGsGKT~f~l~~~-~~l~---~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~-----i~~~~Gg~~~~e~~~~~ 171 (1171)
T TIGR01054 101 PTGVGKTTFGLAMS-LFLA---KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVN-----IGAYHSRLPTKEKKEFM 171 (1171)
T ss_pred CCCCCHHHHHHHHH-HHHH---hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceee-----eeeecCCCCHHHHHHHH
Confidence 45567775333222 2222 13679999999999999999888776421 12111 12345689999999999
Q ss_pred HHHhcCCceEEEEcccccc-ccc-cc-CCCEEEE
Q 037446 516 EKFRAGGYNVIVATSIGEE-GLD-IM-EVDLVIC 546 (1165)
Q Consensus 516 ~~Fr~g~~~VLVATda~~e-GLD-Ip-~vd~VI~ 546 (1165)
+.+.+|..+|||+|...-. .++ +. .+++||.
T Consensus 172 ~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVv 205 (1171)
T TIGR01054 172 ERIENGDFDILITTTMFLSKNYDELGPKFDFIFV 205 (1171)
T ss_pred HHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEE
Confidence 9999999999999963211 111 12 5667665
No 500
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=63.05 E-value=40 Score=38.60 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=30.0
Q ss_pred ccEEEEcccccccCccchHHHHHHHHcC--------CCCCeEEEEccCCCCC
Q 037446 227 LVCLVIDEAHRATGNYAYCTAIRELMSV--------PVQLRILALTATPGSK 270 (1165)
Q Consensus 227 ~~lVVIDEAHrl~~~~~~~~~l~~L~~~--------~~~~riL~LSATP~~~ 270 (1165)
=.++|+||++.|-. +..+.++-++.+ ..+.-+|+||.+-+..
T Consensus 179 rslFIFDE~DKmp~--gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~e 228 (344)
T KOG2170|consen 179 RSLFIFDEVDKLPP--GLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSE 228 (344)
T ss_pred CceEEechhhhcCH--hHHHHHhhhhccccccccccccceEEEEEcCCcchH
Confidence 35899999999976 666666766653 2344578999887543
Done!