Query 037446
Match_columns 1165
No_of_seqs 535 out of 3509
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 21:16:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wp9_A ATP-dependent RNA helic 100.0 6E-47 2E-51 451.0 44.0 469 102-578 2-475 (494)
2 2db3_A ATP-dependent RNA helic 100.0 2.4E-44 8.2E-49 428.7 36.2 360 75-591 48-421 (434)
3 4a2p_A RIG-I, retinoic acid in 100.0 9.8E-44 3.4E-48 434.1 41.0 473 105-580 3-510 (556)
4 3tbk_A RIG-I helicase domain; 100.0 4.9E-43 1.7E-47 427.2 38.9 474 107-586 2-515 (555)
5 4a2q_A RIG-I, retinoic acid in 100.0 4.4E-42 1.5E-46 438.7 41.4 468 107-580 246-751 (797)
6 2i4i_A ATP-dependent RNA helic 100.0 2E-42 7E-47 407.5 33.0 361 77-592 9-397 (417)
7 2j0s_A ATP-dependent RNA helic 100.0 7E-42 2.4E-46 402.6 36.2 356 81-591 35-396 (410)
8 1hv8_A Putative ATP-dependent 100.0 6.4E-42 2.2E-46 394.9 34.8 350 81-591 4-358 (367)
9 1s2m_A Putative ATP-dependent 100.0 2.5E-41 8.4E-46 396.4 37.7 355 80-591 18-378 (400)
10 4a2w_A RIG-I, retinoic acid in 100.0 1.9E-41 6.6E-46 438.2 39.1 462 107-579 246-750 (936)
11 1xti_A Probable ATP-dependent 100.0 4.3E-41 1.5E-45 392.5 37.1 354 83-590 8-370 (391)
12 2ykg_A Probable ATP-dependent 100.0 4.6E-41 1.6E-45 423.1 38.4 473 108-586 12-524 (696)
13 3eiq_A Eukaryotic initiation f 100.0 1.7E-41 5.9E-46 398.9 31.7 357 80-591 37-400 (414)
14 3pey_A ATP-dependent RNA helic 100.0 2.6E-40 9E-45 385.3 37.9 353 82-591 4-370 (395)
15 3fht_A ATP-dependent RNA helic 100.0 3.3E-40 1.1E-44 387.4 36.5 356 80-591 22-393 (412)
16 4gl2_A Interferon-induced heli 100.0 9.4E-41 3.2E-45 420.4 30.7 453 106-577 4-518 (699)
17 3sqw_A ATP-dependent RNA helic 100.0 8.1E-40 2.8E-44 403.6 35.0 357 88-590 27-410 (579)
18 1fuu_A Yeast initiation factor 100.0 2.1E-41 7.1E-46 395.2 19.5 354 82-590 20-378 (394)
19 3i5x_A ATP-dependent RNA helic 100.0 1.8E-39 6.2E-44 398.7 35.1 357 88-590 78-461 (563)
20 2z0m_A 337AA long hypothetical 100.0 3.8E-39 1.3E-43 367.7 31.7 331 89-590 1-334 (337)
21 3fmp_B ATP-dependent RNA helic 100.0 3.5E-40 1.2E-44 397.3 17.6 354 81-590 90-459 (479)
22 1oyw_A RECQ helicase, ATP-depe 100.0 2.9E-38 1E-42 384.5 28.2 374 83-627 2-393 (523)
23 2v1x_A ATP-dependent DNA helic 100.0 6.7E-38 2.3E-42 385.8 31.7 373 88-626 27-418 (591)
24 1z63_A Helicase of the SNF2/RA 100.0 4.2E-37 1.4E-41 372.3 36.4 414 108-619 36-492 (500)
25 3oiy_A Reverse gyrase helicase 100.0 3.1E-37 1.1E-41 364.4 27.9 313 109-591 21-376 (414)
26 3fho_A ATP-dependent RNA helic 100.0 7.3E-38 2.5E-42 380.2 17.3 349 85-590 121-483 (508)
27 1z3i_X Similar to RAD54-like; 100.0 8.5E-36 2.9E-40 371.5 35.0 398 108-575 54-522 (644)
28 3mwy_W Chromo domain-containin 100.0 8.5E-36 2.9E-40 380.3 32.5 393 108-575 235-678 (800)
29 2fwr_A DNA repair protein RAD2 100.0 1.4E-36 4.7E-41 365.1 22.2 356 106-575 90-448 (472)
30 2oca_A DAR protein, ATP-depend 100.0 2.4E-35 8.1E-40 357.8 29.2 339 107-576 111-453 (510)
31 3dmq_A RNA polymerase-associat 100.0 2.9E-35 9.9E-40 381.2 24.7 436 106-593 150-628 (968)
32 2va8_A SSO2462, SKI2-type heli 100.0 2.6E-34 8.8E-39 363.0 30.9 361 81-579 6-409 (715)
33 2p6r_A Afuhel308 helicase; pro 100.0 4.7E-34 1.6E-38 359.9 30.5 351 83-579 1-389 (702)
34 2xgj_A ATP-dependent RNA helic 100.0 2.8E-34 9.5E-39 371.7 28.4 368 107-578 84-499 (1010)
35 2zj8_A DNA helicase, putative 100.0 2.4E-34 8.3E-39 363.5 26.8 350 83-579 1-388 (720)
36 3l9o_A ATP-dependent RNA helic 100.0 2.2E-34 7.5E-39 375.6 26.9 368 106-578 181-597 (1108)
37 3h1t_A Type I site-specific re 100.0 6.2E-34 2.1E-38 351.8 24.0 350 105-570 174-549 (590)
38 4ddu_A Reverse gyrase; topoiso 100.0 1.1E-32 3.9E-37 359.4 27.9 275 109-551 78-388 (1104)
39 4a4z_A Antiviral helicase SKI2 100.0 4.2E-32 1.4E-36 351.3 30.2 406 102-575 32-489 (997)
40 1gm5_A RECG; helicase, replica 100.0 4E-33 1.4E-37 350.7 19.3 307 108-577 367-696 (780)
41 2eyq_A TRCF, transcription-rep 100.0 1.8E-31 6.3E-36 350.1 29.0 308 107-578 601-922 (1151)
42 1tf5_A Preprotein translocase 100.0 1.1E-31 3.6E-36 332.1 24.1 355 99-579 79-546 (844)
43 1gku_B Reverse gyrase, TOP-RG; 100.0 6.7E-32 2.3E-36 352.2 19.3 313 112-592 59-468 (1054)
44 4f92_B U5 small nuclear ribonu 100.0 3E-31 1E-35 357.3 25.5 359 88-593 910-1320(1724)
45 4f92_B U5 small nuclear ribonu 100.0 4.6E-31 1.6E-35 355.6 21.3 336 109-578 79-473 (1724)
46 2jlq_A Serine protease subunit 100.0 5.7E-31 1.9E-35 314.9 17.7 283 101-575 1-308 (451)
47 2xau_A PRE-mRNA-splicing facto 100.0 2.2E-30 7.5E-35 327.6 22.2 335 82-578 71-443 (773)
48 2fsf_A Preprotein translocase 100.0 7.4E-30 2.5E-34 314.8 25.1 128 109-240 74-208 (853)
49 2whx_A Serine protease/ntpase/ 100.0 2.6E-30 9E-35 319.3 17.3 309 89-590 157-493 (618)
50 1nkt_A Preprotein translocase 100.0 1.7E-28 5.7E-33 302.9 31.1 394 100-582 108-621 (922)
51 1yks_A Genome polyprotein [con 100.0 1.4E-30 4.9E-35 310.4 5.3 114 462-590 177-314 (440)
52 2z83_A Helicase/nucleoside tri 100.0 1.6E-29 5.5E-34 303.0 14.4 267 124-577 22-312 (459)
53 3o8b_A HCV NS3 protease/helica 100.0 1.2E-29 4E-34 311.7 12.2 269 113-578 221-514 (666)
54 2v6i_A RNA helicase; membrane, 100.0 1.4E-28 4.9E-33 292.5 20.0 265 123-575 2-287 (431)
55 2wv9_A Flavivirin protease NS2 100.0 1.8E-29 6.3E-34 313.9 12.6 292 96-575 202-530 (673)
56 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.4E-27 4.7E-32 307.8 30.0 362 107-590 269-720 (1038)
57 3rc3_A ATP-dependent RNA helic 99.9 1.4E-25 4.7E-30 278.5 24.3 271 123-580 155-447 (677)
58 2oxc_A Probable ATP-dependent 99.9 1.7E-24 5.7E-29 235.4 21.2 189 77-270 18-211 (230)
59 3fe2_A Probable ATP-dependent 99.9 7.8E-25 2.7E-29 239.8 17.9 192 74-271 20-221 (242)
60 1t6n_A Probable ATP-dependent 99.9 3.9E-24 1.3E-28 230.3 21.7 186 82-272 13-205 (220)
61 1qde_A EIF4A, translation init 99.9 5.6E-24 1.9E-28 229.5 21.3 185 81-271 12-200 (224)
62 2pl3_A Probable ATP-dependent 99.9 6.7E-24 2.3E-28 231.1 21.2 185 82-272 24-217 (236)
63 1vec_A ATP-dependent RNA helic 99.9 1.2E-23 4.2E-28 223.7 22.4 182 83-270 3-190 (206)
64 1q0u_A Bstdead; DEAD protein, 99.9 7.9E-24 2.7E-28 228.0 21.0 183 83-271 4-195 (219)
65 3iuy_A Probable ATP-dependent 99.9 7E-24 2.4E-28 229.7 18.4 187 77-270 13-211 (228)
66 1wrb_A DJVLGB; RNA helicase, D 99.9 7.7E-24 2.6E-28 233.2 18.4 185 81-271 21-223 (253)
67 2gxq_A Heat resistant RNA depe 99.9 1.9E-23 6.5E-28 222.2 20.9 181 83-271 1-189 (207)
68 3bor_A Human initiation factor 99.9 1.3E-23 4.6E-28 229.3 20.0 186 80-271 27-218 (237)
69 3ly5_A ATP-dependent RNA helic 99.9 9.8E-24 3.3E-28 234.3 18.3 187 83-275 52-250 (262)
70 3ber_A Probable ATP-dependent 99.9 2.9E-23 1E-27 228.7 21.8 184 82-271 42-231 (249)
71 3fmo_B ATP-dependent RNA helic 99.9 1.3E-23 4.6E-28 237.9 18.9 186 80-272 89-282 (300)
72 3jux_A Protein translocase sub 99.9 1.7E-22 5.7E-27 244.7 29.1 126 441-582 457-591 (822)
73 3dkp_A Probable ATP-dependent 99.9 2.6E-23 8.8E-28 227.8 14.9 190 77-271 19-224 (245)
74 1c4o_A DNA nucleotide excision 99.9 5.4E-22 1.9E-26 247.4 22.8 132 445-590 426-562 (664)
75 2d7d_A Uvrabc system protein B 99.9 5.8E-22 2E-26 247.0 20.0 131 445-589 432-567 (661)
76 2hjv_A ATP-dependent RNA helic 99.8 5.7E-21 2E-25 196.6 15.6 140 436-591 15-155 (163)
77 2ipc_A Preprotein translocase 99.8 1.1E-20 3.7E-25 232.5 17.6 132 100-241 76-217 (997)
78 1t5i_A C_terminal domain of A 99.8 1.2E-20 4.1E-25 196.1 14.6 140 435-590 10-151 (172)
79 3eaq_A Heat resistant RNA depe 99.8 4.7E-20 1.6E-24 198.2 17.1 138 438-591 13-151 (212)
80 3b6e_A Interferon-induced heli 99.8 1.9E-20 6.4E-25 199.8 13.5 161 105-266 29-216 (216)
81 2jgn_A DBX, DDX3, ATP-dependen 99.8 1.3E-20 4.3E-25 198.4 11.7 144 434-592 23-167 (185)
82 2p6n_A ATP-dependent RNA helic 99.8 2.5E-20 8.7E-25 197.1 12.9 141 435-592 34-176 (191)
83 2rb4_A ATP-dependent RNA helic 99.8 5.7E-20 1.9E-24 191.3 14.3 134 442-591 20-160 (175)
84 1fuk_A Eukaryotic initiation f 99.8 2.2E-20 7.7E-25 192.5 10.7 132 443-590 17-149 (165)
85 1rif_A DAR protein, DNA helica 99.8 6.5E-20 2.2E-24 205.4 14.8 163 108-281 112-276 (282)
86 3i32_A Heat resistant RNA depe 99.8 2.7E-19 9.4E-24 202.0 14.1 140 437-592 9-149 (300)
87 1z5z_A Helicase of the SNF2/RA 99.8 3.4E-18 1.2E-22 190.6 20.9 169 438-620 92-264 (271)
88 2yjt_D ATP-dependent RNA helic 99.7 1.1E-20 3.7E-25 195.9 0.0 133 441-589 15-148 (170)
89 2fz4_A DNA repair protein RAD2 99.7 2.2E-17 7.7E-22 180.4 17.7 140 107-271 91-232 (237)
90 2vl7_A XPD; helicase, unknown 99.7 2.4E-16 8.2E-21 192.5 21.8 123 108-239 6-188 (540)
91 3llm_A ATP-dependent RNA helic 99.6 2.5E-16 8.6E-21 171.6 9.9 155 108-270 60-221 (235)
92 4a15_A XPD helicase, ATP-depen 99.5 6.7E-13 2.3E-17 164.2 21.6 81 108-189 2-87 (620)
93 3crv_A XPD/RAD3 related DNA he 99.3 2E-12 6.8E-17 158.3 9.4 128 108-240 2-187 (551)
94 3hgt_A HDA1 complex subunit 3; 98.5 3.9E-07 1.3E-11 102.5 10.7 117 440-575 107-231 (328)
95 1w36_D RECD, exodeoxyribonucle 97.8 2.5E-05 8.6E-10 96.4 9.5 66 111-176 151-219 (608)
96 4b3f_X DNA-binding protein smu 97.7 7.7E-05 2.6E-09 92.8 10.2 65 109-175 189-255 (646)
97 2gk6_A Regulator of nonsense t 97.6 0.00023 7.8E-09 88.2 13.0 67 108-175 179-246 (624)
98 2xzl_A ATP-dependent helicase 97.5 0.00036 1.2E-08 88.6 12.6 68 108-176 359-427 (802)
99 2wjy_A Regulator of nonsense t 97.4 0.00057 1.9E-08 86.7 12.0 67 108-175 355-422 (800)
100 2o0j_A Terminase, DNA packagin 97.2 0.0013 4.6E-08 76.2 11.3 157 106-278 160-323 (385)
101 3e1s_A Exodeoxyribonuclease V, 97.2 0.0015 5.3E-08 79.8 12.4 63 107-171 187-250 (574)
102 3lfu_A DNA helicase II; SF1 he 97.0 0.0022 7.4E-08 79.5 11.8 70 109-179 9-80 (647)
103 3cpe_A Terminase, DNA packagin 97.0 0.004 1.4E-07 76.6 13.5 158 106-278 160-323 (592)
104 3upu_A ATP-dependent DNA helic 96.9 0.0023 7.9E-08 76.1 10.7 61 109-170 25-91 (459)
105 4drb_C Fanconi anemia group M 96.9 0.00082 2.8E-08 64.4 4.7 44 634-677 73-116 (141)
106 3te6_A Regulatory protein SIR3 95.9 0.091 3.1E-06 59.2 14.9 25 124-148 46-70 (318)
107 3vkw_A Replicase large subunit 95.6 0.023 7.8E-07 66.8 8.9 84 126-239 164-247 (446)
108 2orw_A Thymidine kinase; TMTK, 95.3 0.037 1.3E-06 57.3 8.4 36 126-163 6-41 (184)
109 1a5t_A Delta prime, HOLB; zinc 95.2 0.043 1.5E-06 62.3 9.4 38 111-148 4-49 (334)
110 2b8t_A Thymidine kinase; deoxy 94.9 0.049 1.7E-06 58.3 8.1 110 126-266 15-124 (223)
111 2j9r_A Thymidine kinase; TK1, 94.9 0.048 1.6E-06 57.9 7.8 36 126-163 31-66 (214)
112 1xx6_A Thymidine kinase; NESG, 94.7 0.1 3.4E-06 54.5 9.6 36 126-163 11-46 (191)
113 2qby_B CDC6 homolog 3, cell di 94.4 0.12 4E-06 59.1 10.3 24 124-147 46-69 (384)
114 2v1u_A Cell division control p 94.2 0.17 6E-06 57.5 11.2 24 124-147 45-68 (387)
115 3e2i_A Thymidine kinase; Zn-bi 94.1 0.09 3.1E-06 55.8 7.7 110 126-267 31-140 (219)
116 1uaa_A REP helicase, protein ( 94.0 0.095 3.3E-06 65.2 8.9 88 109-217 2-91 (673)
117 3ec2_A DNA replication protein 93.9 0.24 8.3E-06 50.3 10.3 47 124-172 39-85 (180)
118 2orv_A Thymidine kinase; TP4A 93.8 0.12 4.2E-06 55.3 8.1 37 126-164 22-58 (234)
119 2chg_A Replication factor C sm 93.8 0.26 9E-06 50.8 10.6 24 124-147 39-62 (226)
120 1pjr_A PCRA; DNA repair, DNA r 93.7 0.077 2.6E-06 66.7 7.6 106 109-236 11-120 (724)
121 1l8q_A Chromosomal replication 93.6 0.2 6.9E-06 56.1 9.9 43 124-169 38-80 (324)
122 2z4s_A Chromosomal replication 93.5 0.25 8.4E-06 58.3 10.9 45 124-169 131-175 (440)
123 2gno_A DNA polymerase III, gam 92.9 0.34 1.1E-05 54.3 10.4 39 224-264 80-119 (305)
124 1fnn_A CDC6P, cell division co 92.6 0.16 5.3E-06 58.0 7.3 35 125-160 46-80 (389)
125 3crv_A XPD/RAD3 related DNA he 92.2 0.33 1.1E-05 58.9 9.8 89 444-551 378-473 (551)
126 3kl4_A SRP54, signal recogniti 92.0 1.1 3.7E-05 52.7 13.4 122 125-270 99-226 (433)
127 3bos_A Putative DNA replicatio 91.6 0.12 4.1E-06 54.5 4.4 24 124-147 53-76 (242)
128 1w4r_A Thymidine kinase; type 91.4 0.51 1.7E-05 49.2 8.6 36 125-162 22-57 (195)
129 3u4q_A ATP-dependent helicase/ 91.1 0.2 7E-06 66.7 6.7 128 104-237 5-138 (1232)
130 2p65_A Hypothetical protein PF 91.0 1.6 5.4E-05 43.5 11.9 24 124-147 44-67 (187)
131 3syl_A Protein CBBX; photosynt 90.9 0.24 8.3E-06 54.8 6.1 24 124-147 68-91 (309)
132 1iqp_A RFCS; clamp loader, ext 90.6 0.65 2.2E-05 51.4 9.4 22 125-146 48-69 (327)
133 1njg_A DNA polymerase III subu 90.2 2.3 7.7E-05 44.1 12.6 22 125-146 47-68 (250)
134 1d2n_A N-ethylmaleimide-sensit 90.0 0.99 3.4E-05 49.0 9.9 23 124-146 65-87 (272)
135 1jbk_A CLPB protein; beta barr 89.8 1.9 6.4E-05 43.0 11.3 24 124-147 44-67 (195)
136 3eie_A Vacuolar protein sortin 89.6 0.44 1.5E-05 53.4 7.0 23 124-146 52-74 (322)
137 3n70_A Transport activator; si 89.3 1.1 3.7E-05 44.0 8.7 20 124-143 25-44 (145)
138 2qby_A CDC6 homolog 1, cell di 89.2 0.91 3.1E-05 51.3 9.3 37 124-160 46-83 (386)
139 1sxj_B Activator 1 37 kDa subu 89.0 0.67 2.3E-05 51.2 7.7 23 125-147 44-66 (323)
140 3u61_B DNA polymerase accessor 88.8 0.83 2.9E-05 50.9 8.4 40 225-266 104-144 (324)
141 3dm5_A SRP54, signal recogniti 88.6 2.1 7.3E-05 50.2 12.0 122 125-270 102-227 (443)
142 3pfi_A Holliday junction ATP-d 88.6 1.2 4.1E-05 49.8 9.6 21 124-144 56-76 (338)
143 2bjv_A PSP operon transcriptio 88.0 0.89 3.1E-05 49.1 7.7 21 124-144 30-50 (265)
144 4b4t_J 26S protease regulatory 87.9 0.82 2.8E-05 53.0 7.6 34 124-162 183-216 (405)
145 2qp9_X Vacuolar protein sortin 87.5 0.9 3.1E-05 51.8 7.7 24 124-147 85-108 (355)
146 3h4m_A Proteasome-activating n 87.5 0.4 1.4E-05 52.4 4.6 22 124-145 52-73 (285)
147 3vfd_A Spastin; ATPase, microt 87.4 0.77 2.6E-05 52.9 7.1 22 124-145 149-170 (389)
148 2qz4_A Paraplegin; AAA+, SPG7, 87.2 2.3 8E-05 45.3 10.5 23 124-146 40-62 (262)
149 1sxj_C Activator 1 40 kDa subu 87.0 1.3 4.6E-05 49.7 8.7 23 125-147 48-70 (340)
150 3t15_A Ribulose bisphosphate c 86.6 1.2 4.2E-05 49.2 8.0 24 124-147 37-60 (293)
151 2zpa_A Uncharacterized protein 86.6 0.68 2.3E-05 57.0 6.3 111 110-268 176-289 (671)
152 1gm5_A RECG; helicase, replica 86.5 5.8 0.0002 50.0 14.9 99 436-546 395-496 (780)
153 1sxj_E Activator 1 40 kDa subu 86.2 2.1 7.3E-05 48.0 9.9 43 225-268 133-175 (354)
154 2iut_A DNA translocase FTSK; n 85.5 1.3 4.5E-05 53.6 7.9 39 124-162 215-255 (574)
155 3cf0_A Transitional endoplasmi 85.4 0.98 3.3E-05 50.1 6.4 23 124-146 50-72 (301)
156 1sxj_D Activator 1 41 kDa subu 85.3 1.6 5.3E-05 49.0 8.2 24 124-147 59-82 (353)
157 1hqc_A RUVB; extended AAA-ATPa 85.0 1.5 5.2E-05 48.5 7.8 22 124-145 39-60 (324)
158 2kjq_A DNAA-related protein; s 84.9 0.71 2.4E-05 45.8 4.5 25 123-147 36-60 (149)
159 2zan_A Vacuolar protein sortin 84.9 1.2 4E-05 52.5 7.0 23 124-146 168-190 (444)
160 2chq_A Replication factor C sm 84.6 0.72 2.4E-05 50.9 4.8 23 125-147 40-62 (319)
161 1jr3_A DNA polymerase III subu 84.6 1.7 5.7E-05 49.1 8.0 22 126-147 41-62 (373)
162 1w5s_A Origin recognition comp 84.5 0.94 3.2E-05 52.0 5.9 22 125-146 52-75 (412)
163 3pvs_A Replication-associated 84.5 1.3 4.4E-05 52.3 7.2 22 124-145 51-72 (447)
164 1xwi_A SKD1 protein; VPS4B, AA 83.8 6.9 0.00023 43.7 12.5 23 124-146 46-68 (322)
165 3io5_A Recombination and repai 83.7 1.2 4.1E-05 50.1 6.0 90 125-239 30-124 (333)
166 3oiy_A Reverse gyrase helicase 83.1 4.5 0.00016 46.4 11.0 97 438-546 44-145 (414)
167 2q6t_A DNAB replication FORK h 83.1 3.7 0.00013 48.2 10.3 111 125-240 202-324 (444)
168 3uk6_A RUVB-like 2; hexameric 82.8 3.4 0.00011 46.7 9.5 24 124-147 71-94 (368)
169 4b4t_H 26S protease regulatory 82.6 1.3 4.6E-05 52.1 6.1 24 124-147 244-267 (467)
170 2r6a_A DNAB helicase, replicat 82.4 3.6 0.00012 48.4 10.0 111 125-240 205-327 (454)
171 3hjh_A Transcription-repair-co 82.4 4.6 0.00016 48.0 10.7 50 124-178 15-64 (483)
172 4a1f_A DNAB helicase, replicat 82.4 2.4 8.4E-05 48.0 8.0 110 126-240 49-170 (338)
173 2w0m_A SSO2452; RECA, SSPF, un 81.9 6.3 0.00022 40.8 10.7 47 125-174 25-71 (235)
174 2px0_A Flagellar biosynthesis 80.4 6 0.00021 43.8 10.2 35 125-160 107-141 (296)
175 4b4t_I 26S protease regulatory 80.1 2.3 7.7E-05 49.7 6.8 24 124-147 217-240 (437)
176 2cvh_A DNA repair and recombin 79.9 2.2 7.5E-05 44.2 6.1 33 125-162 22-54 (220)
177 1ojl_A Transcriptional regulat 79.8 2 6.7E-05 47.9 6.0 21 124-144 26-46 (304)
178 3hu3_A Transitional endoplasmi 78.5 2.2 7.6E-05 50.8 6.3 21 124-144 239-259 (489)
179 1n0w_A DNA repair protein RAD5 78.1 8.2 0.00028 40.4 10.1 38 125-162 26-67 (243)
180 1sxj_A Activator 1 95 kDa subu 75.8 2.7 9.3E-05 50.4 6.1 23 124-146 78-100 (516)
181 1cr0_A DNA primase/helicase; R 75.8 3.7 0.00013 45.1 6.7 37 125-162 37-73 (296)
182 4ddu_A Reverse gyrase; topoiso 75.4 6.9 0.00024 51.3 10.2 97 437-546 100-202 (1104)
183 2ce7_A Cell division protein F 75.1 2.6 9E-05 50.0 5.6 23 124-146 50-72 (476)
184 1vma_A Cell division protein F 74.8 21 0.00071 39.7 12.6 33 126-160 107-139 (306)
185 2hjv_A ATP-dependent RNA helic 74.4 11 0.00036 37.4 9.2 74 151-234 33-111 (163)
186 2eyq_A TRCF, transcription-rep 74.1 25 0.00086 46.3 15.0 99 436-546 630-731 (1151)
187 2v3c_C SRP54, signal recogniti 72.4 5.7 0.00019 46.5 7.5 35 124-160 100-134 (432)
188 3k1j_A LON protease, ATP-depen 72.0 9.1 0.00031 46.7 9.6 21 124-144 61-81 (604)
189 1fuk_A Eukaryotic initiation f 71.9 14 0.00049 36.4 9.5 76 149-234 26-106 (165)
190 2fna_A Conserved hypothetical 71.6 38 0.0013 37.2 13.9 35 109-144 16-51 (357)
191 2rb4_A ATP-dependent RNA helic 69.9 12 0.00042 37.3 8.5 77 146-232 27-108 (175)
192 1r6b_X CLPA protein; AAA+, N-t 69.8 11 0.00038 47.2 9.8 23 124-146 208-230 (758)
193 3bgw_A DNAB-like replicative h 69.7 4.8 0.00016 47.3 6.1 110 125-240 199-324 (444)
194 2p6n_A ATP-dependent RNA helic 69.6 21 0.00073 36.4 10.4 71 152-232 53-128 (191)
195 1t5i_A C_terminal domain of A 69.5 16 0.00053 36.6 9.1 77 148-234 26-107 (172)
196 1xp8_A RECA protein, recombina 69.4 4.2 0.00015 46.5 5.4 38 125-164 76-113 (366)
197 2zr9_A Protein RECA, recombina 69.2 5 0.00017 45.6 5.9 37 125-163 63-99 (349)
198 1u94_A RECA protein, recombina 68.7 4.9 0.00017 45.8 5.7 39 124-164 64-102 (356)
199 1qvr_A CLPB protein; coiled co 67.7 16 0.00054 46.6 10.7 24 124-147 192-215 (854)
200 3u4q_B ATP-dependent helicase/ 67.6 6.4 0.00022 52.0 7.3 87 126-236 4-91 (1166)
201 3eaq_A Heat resistant RNA depe 67.6 16 0.00054 38.0 9.0 72 151-232 29-105 (212)
202 1t6n_A Probable ATP-dependent 67.1 31 0.0011 35.4 11.2 98 437-546 58-164 (220)
203 3pxi_A Negative regulator of g 66.0 5.2 0.00018 50.3 5.7 23 125-147 523-545 (758)
204 3hr8_A Protein RECA; alpha and 65.5 5.9 0.0002 45.2 5.5 39 125-165 63-101 (356)
205 3cf2_A TER ATPase, transitiona 65.5 4.9 0.00017 50.7 5.2 23 124-146 512-534 (806)
206 2w58_A DNAI, primosome compone 64.8 6.5 0.00022 40.2 5.3 35 124-160 55-89 (202)
207 3cmu_A Protein RECA, recombina 64.5 4.5 0.00015 55.7 4.9 39 124-164 1428-1466(2050)
208 2qgz_A Helicase loader, putati 64.4 6.1 0.00021 43.9 5.3 36 124-160 153-188 (308)
209 2dhr_A FTSH; AAA+ protein, hex 63.9 20 0.00067 42.7 9.8 21 124-144 65-85 (499)
210 3bor_A Human initiation factor 63.2 21 0.00071 37.5 9.0 97 438-546 75-179 (237)
211 2jgn_A DBX, DDX3, ATP-dependen 62.3 18 0.00061 36.8 8.0 71 152-232 45-120 (185)
212 1e9r_A Conjugal transfer prote 61.4 8.8 0.0003 44.6 6.1 43 123-167 53-95 (437)
213 3co5_A Putative two-component 60.8 5.5 0.00019 38.7 3.6 19 124-142 28-46 (143)
214 1q57_A DNA primase/helicase; d 59.8 11 0.00036 44.9 6.6 47 125-173 244-290 (503)
215 3m6a_A ATP-dependent protease 59.8 9 0.00031 46.2 6.0 23 124-146 109-131 (543)
216 2ffh_A Protein (FFH); SRP54, s 59.3 46 0.0016 38.7 11.7 53 125-179 100-154 (425)
217 3i5x_A ATP-dependent RNA helic 59.1 61 0.0021 38.5 13.3 108 134-253 319-432 (563)
218 2dr3_A UPF0273 protein PH0284; 58.6 11 0.00039 39.3 5.9 49 124-175 24-72 (247)
219 3cf2_A TER ATPase, transitiona 58.4 8 0.00027 48.8 5.3 21 124-144 239-259 (806)
220 2gxq_A Heat resistant RNA depe 58.4 46 0.0016 33.5 10.4 98 437-546 45-150 (207)
221 1ls1_A Signal recognition part 58.1 40 0.0014 37.0 10.5 34 125-160 100-133 (295)
222 3sqw_A ATP-dependent RNA helic 57.6 89 0.003 37.4 14.4 88 141-235 275-368 (579)
223 3ber_A Probable ATP-dependent 57.4 46 0.0016 35.2 10.6 96 438-546 88-192 (249)
224 2zts_A Putative uncharacterize 56.9 11 0.00037 39.5 5.4 49 125-175 32-80 (251)
225 4b4t_M 26S protease regulatory 54.8 9.2 0.00031 44.7 4.7 34 124-162 216-249 (434)
226 2oxc_A Probable ATP-dependent 54.0 49 0.0017 34.3 9.9 95 437-546 68-172 (230)
227 1wp9_A ATP-dependent RNA helic 53.9 34 0.0011 39.1 9.4 94 132-235 340-446 (494)
228 1xti_A Probable ATP-dependent 53.6 60 0.0021 36.2 11.3 98 437-546 52-158 (391)
229 4b4t_L 26S protease subunit RP 52.8 9.8 0.00034 44.5 4.5 24 124-147 216-239 (437)
230 1vec_A ATP-dependent RNA helic 52.3 69 0.0024 32.2 10.6 96 438-546 48-152 (206)
231 2xau_A PRE-mRNA-splicing facto 51.2 84 0.0029 39.4 13.0 83 144-232 294-393 (773)
232 2xxa_A Signal recognition part 50.8 78 0.0027 36.8 11.8 53 125-178 102-156 (433)
233 4b4t_K 26S protease regulatory 50.7 12 0.0004 43.8 4.7 24 124-147 207-230 (428)
234 2oca_A DAR protein, ATP-depend 48.9 1.4E+02 0.0049 34.7 14.1 92 153-255 347-443 (510)
235 3i32_A Heat resistant RNA depe 48.6 33 0.0011 37.9 7.8 71 152-232 27-102 (300)
236 3bh0_A DNAB-like replicative h 48.6 28 0.00096 38.6 7.3 48 125-175 70-117 (315)
237 3fe2_A Probable ATP-dependent 47.6 93 0.0032 32.4 10.9 98 437-546 73-182 (242)
238 3fht_A ATP-dependent RNA helic 46.5 43 0.0015 37.6 8.6 93 152-254 265-363 (412)
239 1hv8_A Putative ATP-dependent 45.6 62 0.0021 35.5 9.6 73 151-233 236-313 (367)
240 1oyw_A RECQ helicase, ATP-depe 43.6 61 0.0021 38.5 9.7 59 462-530 65-123 (523)
241 3dkp_A Probable ATP-dependent 43.5 39 0.0013 35.3 7.2 99 437-546 73-181 (245)
242 1ofh_A ATP-dependent HSL prote 43.5 14 0.00046 40.2 3.6 23 124-146 51-73 (310)
243 2yjt_D ATP-dependent RNA helic 49.4 5 0.00017 40.2 0.0 72 151-232 28-104 (170)
244 2pl3_A Probable ATP-dependent 43.1 77 0.0026 32.8 9.4 57 461-530 96-154 (236)
245 1s2m_A Putative ATP-dependent 42.7 65 0.0022 36.1 9.4 90 149-253 254-348 (400)
246 4ag6_A VIRB4 ATPase, type IV s 42.6 20 0.00068 40.9 5.0 40 123-164 35-74 (392)
247 1w36_B RECB, exodeoxyribonucle 42.5 29 0.001 45.8 7.1 54 124-177 17-80 (1180)
248 2i4i_A ATP-dependent RNA helic 42.1 79 0.0027 35.6 10.0 71 152-232 275-350 (417)
249 2r44_A Uncharacterized protein 42.0 15 0.00051 40.7 3.7 23 123-145 46-68 (331)
250 2ius_A DNA translocase FTSK; n 41.9 21 0.00071 42.6 5.1 39 124-162 168-207 (512)
251 3cmw_A Protein RECA, recombina 41.9 20 0.00067 48.9 5.3 43 124-169 733-775 (1706)
252 3hws_A ATP-dependent CLP prote 41.1 13 0.00045 41.9 3.1 23 124-146 52-74 (363)
253 1lv7_A FTSH; alpha/beta domain 41.0 14 0.00047 39.4 3.0 23 124-146 46-68 (257)
254 3pey_A ATP-dependent RNA helic 40.9 68 0.0023 35.6 9.1 95 149-253 239-339 (395)
255 1u0j_A DNA replication protein 40.6 33 0.0011 37.4 5.9 48 92-145 74-126 (267)
256 2db3_A ATP-dependent RNA helic 39.8 1.5E+02 0.005 34.0 11.9 85 154-253 301-390 (434)
257 2j37_W Signal recognition part 39.4 2.8E+02 0.0094 32.9 14.2 53 125-179 103-157 (504)
258 2j0s_A ATP-dependent RNA helic 38.9 63 0.0022 36.4 8.5 71 152-232 275-350 (410)
259 3trf_A Shikimate kinase, SK; a 38.8 17 0.00056 36.4 3.1 23 124-146 6-28 (185)
260 2v1x_A ATP-dependent DNA helic 38.7 50 0.0017 40.1 7.9 59 462-530 84-144 (591)
261 3a8t_A Adenylate isopentenyltr 38.6 14 0.00049 41.6 2.8 21 125-145 42-62 (339)
262 3b9p_A CG5977-PA, isoform A; A 38.4 15 0.0005 40.0 2.8 22 124-145 55-76 (297)
263 3e70_C DPA, signal recognition 38.0 1.9E+02 0.0066 32.1 12.0 121 125-269 131-255 (328)
264 2r62_A Cell division protease 37.7 11 0.00037 40.3 1.6 23 124-146 45-67 (268)
265 1qde_A EIF4A, translation init 37.6 65 0.0022 32.9 7.6 95 437-546 58-161 (224)
266 1um8_A ATP-dependent CLP prote 37.1 16 0.00056 41.3 3.1 23 124-146 73-95 (376)
267 1p9r_A General secretion pathw 37.0 36 0.0012 39.5 6.0 45 114-160 155-202 (418)
268 2yhs_A FTSY, cell division pro 36.9 1.7E+02 0.006 34.6 11.8 35 126-162 296-331 (503)
269 3d8b_A Fidgetin-like protein 1 36.8 21 0.00072 40.2 3.9 22 124-145 118-139 (357)
270 2ze6_A Isopentenyl transferase 36.7 19 0.00064 38.6 3.3 21 126-146 4-24 (253)
271 2c9o_A RUVB-like 1; hexameric 36.5 17 0.00057 42.6 3.1 23 124-146 64-86 (456)
272 1nlf_A Regulatory protein REPA 36.0 52 0.0018 35.4 6.8 50 124-175 31-89 (279)
273 3foz_A TRNA delta(2)-isopenten 35.5 19 0.00065 40.2 3.1 21 126-146 13-33 (316)
274 3exa_A TRNA delta(2)-isopenten 35.0 18 0.0006 40.5 2.7 20 126-145 6-25 (322)
275 3cmw_A Protein RECA, recombina 34.9 32 0.0011 46.9 5.6 88 126-240 1434-1523(1706)
276 2z43_A DNA repair and recombin 34.7 33 0.0011 38.1 5.0 59 117-175 95-164 (324)
277 1v5w_A DMC1, meiotic recombina 34.7 35 0.0012 38.3 5.2 48 117-164 110-167 (343)
278 1gku_B Reverse gyrase, TOP-RG; 34.6 66 0.0023 41.9 8.5 95 438-546 79-181 (1054)
279 2r8r_A Sensor protein; KDPD, P 34.3 27 0.00094 37.0 4.0 26 125-150 8-33 (228)
280 1q0u_A Bstdead; DEAD protein, 33.9 54 0.0019 33.6 6.3 97 437-546 48-156 (219)
281 1tue_A Replication protein E1; 33.9 19 0.00064 37.8 2.6 21 125-145 60-80 (212)
282 3iuy_A Probable ATP-dependent 33.5 1.3E+02 0.0045 30.7 9.2 74 461-546 93-173 (228)
283 2l8b_A Protein TRAI, DNA helic 33.5 47 0.0016 34.1 5.4 56 108-164 33-91 (189)
284 1wrb_A DJVLGB; RNA helicase, D 33.4 1.8E+02 0.0062 30.2 10.5 73 462-546 100-180 (253)
285 3jvv_A Twitching mobility prot 33.4 30 0.001 39.2 4.4 38 124-162 124-161 (356)
286 3fkq_A NTRC-like two-domain pr 33.1 83 0.0029 35.5 8.1 31 128-160 149-179 (373)
287 2i1q_A DNA repair and recombin 33.0 37 0.0013 37.4 5.1 59 117-175 86-165 (322)
288 3iij_A Coilin-interacting nucl 33.0 27 0.00093 34.7 3.6 23 124-146 12-34 (180)
289 4fcw_A Chaperone protein CLPB; 32.7 23 0.0008 38.5 3.3 23 125-147 49-71 (311)
290 1fuu_A Yeast initiation factor 31.9 1.6E+02 0.0054 32.6 10.2 95 438-546 66-168 (394)
291 3tbk_A RIG-I helicase domain; 31.6 93 0.0032 36.4 8.6 94 133-232 369-476 (555)
292 3kb2_A SPBC2 prophage-derived 31.3 28 0.00095 33.9 3.3 22 125-146 3-24 (173)
293 2kvs_A Uncharacterized protein 31.2 11 0.00037 33.2 0.2 10 1137-1146 4-13 (80)
294 3vaa_A Shikimate kinase, SK; s 31.0 25 0.00087 35.7 3.0 24 124-147 26-49 (199)
295 3eiq_A Eukaryotic initiation f 31.0 98 0.0033 34.7 8.3 98 437-546 84-189 (414)
296 3d3q_A TRNA delta(2)-isopenten 31.0 23 0.00077 40.0 2.8 22 125-146 9-30 (340)
297 3crm_A TRNA delta(2)-isopenten 30.9 25 0.00084 39.4 3.1 22 125-146 7-28 (323)
298 3lw7_A Adenylate kinase relate 30.8 23 0.00079 34.4 2.6 18 126-143 4-21 (179)
299 3eph_A TRNA isopentenyltransfe 30.6 25 0.00086 40.6 3.1 22 126-147 5-26 (409)
300 3nbx_X ATPase RAVA; AAA+ ATPas 30.5 26 0.00088 41.7 3.3 22 123-144 41-62 (500)
301 3ly5_A ATP-dependent RNA helic 30.3 1.8E+02 0.006 30.8 9.8 74 461-546 125-207 (262)
302 2d7d_A Uvrabc system protein B 30.2 2.6E+02 0.0088 34.2 12.4 93 152-254 444-541 (661)
303 2l82_A Designed protein OR32; 30.2 1.4E+02 0.0048 27.4 7.3 50 465-524 5-54 (162)
304 1jr3_D DNA polymerase III, del 29.8 2.2E+02 0.0076 31.2 10.9 41 224-266 74-115 (343)
305 1g5t_A COB(I)alamin adenosyltr 29.3 54 0.0018 33.9 5.1 36 124-161 29-64 (196)
306 1ixz_A ATP-dependent metallopr 29.3 24 0.0008 37.4 2.5 21 124-144 50-70 (254)
307 2ewv_A Twitching motility prot 29.3 38 0.0013 38.5 4.4 36 124-160 137-172 (372)
308 1g8p_A Magnesium-chelatase 38 29.1 20 0.00067 39.8 1.9 22 124-145 46-67 (350)
309 4a2p_A RIG-I, retinoic acid in 29.1 71 0.0024 37.5 7.0 95 132-232 369-477 (556)
310 1qhx_A CPT, protein (chloramph 29.0 27 0.00093 34.5 2.8 21 125-145 5-25 (178)
311 2r2a_A Uncharacterized protein 28.6 30 0.001 35.7 3.1 37 126-162 8-47 (199)
312 2qmh_A HPR kinase/phosphorylas 28.4 25 0.00087 36.6 2.4 21 124-144 35-55 (205)
313 1zuh_A Shikimate kinase; alpha 28.4 31 0.0011 33.8 3.1 24 124-147 8-31 (168)
314 3fmo_B ATP-dependent RNA helic 28.0 80 0.0027 34.5 6.7 92 438-546 139-241 (300)
315 3pxg_A Negative regulator of g 27.8 36 0.0012 39.9 4.0 24 124-147 202-225 (468)
316 1kht_A Adenylate kinase; phosp 27.0 36 0.0012 33.8 3.3 22 125-146 5-26 (192)
317 1via_A Shikimate kinase; struc 26.8 40 0.0014 33.3 3.6 23 124-146 5-27 (175)
318 2oap_1 GSPE-2, type II secreti 26.6 41 0.0014 40.1 4.2 18 124-141 261-278 (511)
319 2vhj_A Ntpase P4, P4; non- hyd 26.6 19 0.00065 40.4 1.2 32 125-161 125-156 (331)
320 1ly1_A Polynucleotide kinase; 26.6 32 0.0011 33.8 2.8 19 126-144 5-23 (181)
321 1g41_A Heat shock protein HSLU 26.4 32 0.0011 40.3 3.1 23 124-146 51-73 (444)
322 1kgd_A CASK, peripheral plasma 26.2 32 0.0011 34.4 2.8 21 124-144 6-26 (180)
323 2z0m_A 337AA long hypothetical 26.0 1.1E+02 0.0037 33.1 7.3 73 147-233 214-291 (337)
324 3tau_A Guanylate kinase, GMP k 25.8 32 0.0011 35.3 2.7 20 125-144 10-29 (208)
325 1y63_A LMAJ004144AAA protein; 25.6 35 0.0012 34.2 2.9 22 124-145 11-32 (184)
326 2rhm_A Putative kinase; P-loop 25.6 38 0.0013 33.7 3.2 22 125-146 7-28 (193)
327 1zu4_A FTSY; GTPase, signal re 25.6 59 0.002 36.2 5.0 33 126-160 108-140 (320)
328 1nks_A Adenylate kinase; therm 25.6 38 0.0013 33.6 3.1 22 126-147 4-25 (194)
329 1in4_A RUVB, holliday junction 25.1 41 0.0014 37.4 3.6 23 124-146 52-74 (334)
330 3fb4_A Adenylate kinase; psych 25.1 40 0.0014 34.5 3.3 22 125-146 2-23 (216)
331 4akg_A Glutathione S-transfera 25.0 94 0.0032 44.5 7.8 23 124-146 924-946 (2695)
332 1tev_A UMP-CMP kinase; ploop, 24.9 41 0.0014 33.4 3.3 22 125-146 5-26 (196)
333 2eyu_A Twitching motility prot 24.7 35 0.0012 36.8 2.8 35 124-159 26-60 (261)
334 3t61_A Gluconokinase; PSI-biol 24.7 41 0.0014 34.1 3.3 23 124-146 19-41 (202)
335 2ehv_A Hypothetical protein PH 24.5 55 0.0019 33.9 4.3 38 124-162 31-68 (251)
336 3cm0_A Adenylate kinase; ATP-b 24.3 43 0.0015 33.2 3.3 22 125-146 6-27 (186)
337 3lda_A DNA repair protein RAD5 24.1 57 0.002 37.5 4.6 38 126-163 181-222 (400)
338 2yvu_A Probable adenylyl-sulfa 24.1 72 0.0025 31.7 5.0 33 125-159 15-47 (186)
339 1byi_A Dethiobiotin synthase; 24.1 71 0.0024 32.7 5.0 33 127-161 6-38 (224)
340 3sr0_A Adenylate kinase; phosp 24.0 44 0.0015 34.7 3.3 23 125-147 2-24 (206)
341 1e6c_A Shikimate kinase; phosp 23.9 49 0.0017 32.3 3.6 22 125-146 4-25 (173)
342 1qf9_A UMP/CMP kinase, protein 23.9 43 0.0015 33.2 3.2 22 125-146 8-29 (194)
343 1ex7_A Guanylate kinase; subst 23.7 38 0.0013 34.6 2.8 21 201-221 46-66 (186)
344 1zak_A Adenylate kinase; ATP:A 23.7 46 0.0016 34.3 3.5 24 124-147 6-29 (222)
345 1kag_A SKI, shikimate kinase I 23.6 42 0.0015 32.8 3.0 21 124-144 5-25 (173)
346 2c95_A Adenylate kinase 1; tra 23.6 43 0.0015 33.4 3.2 23 124-146 10-32 (196)
347 1iy2_A ATP-dependent metallopr 23.5 37 0.0013 36.5 2.8 21 124-144 74-94 (278)
348 2iyv_A Shikimate kinase, SK; t 23.4 46 0.0016 33.0 3.3 22 125-146 4-25 (184)
349 3pxi_A Negative regulator of g 23.3 47 0.0016 41.5 4.0 24 124-147 202-225 (758)
350 1z5z_A Helicase of the SNF2/RA 23.2 2.4E+02 0.0083 30.2 9.3 92 131-232 92-189 (271)
351 2bwj_A Adenylate kinase 5; pho 23.1 45 0.0015 33.4 3.2 23 124-146 13-35 (199)
352 2jaq_A Deoxyguanosine kinase; 22.8 47 0.0016 33.3 3.3 22 126-147 3-24 (205)
353 2x8a_A Nuclear valosin-contain 22.6 40 0.0014 36.5 2.8 21 124-144 45-65 (274)
354 3zq6_A Putative arsenical pump 22.5 69 0.0024 35.5 4.8 34 126-161 17-50 (324)
355 2cdn_A Adenylate kinase; phosp 22.4 49 0.0017 33.5 3.3 22 125-146 22-43 (201)
356 1zp6_A Hypothetical protein AT 22.3 40 0.0014 33.6 2.6 19 125-143 11-29 (191)
357 1aky_A Adenylate kinase; ATP:A 22.2 49 0.0017 34.1 3.3 23 125-147 6-28 (220)
358 3umf_A Adenylate kinase; rossm 22.1 49 0.0017 34.7 3.3 23 125-147 31-53 (217)
359 2pt7_A CAG-ALFA; ATPase, prote 21.9 86 0.0029 34.9 5.4 18 124-141 172-189 (330)
360 3g5j_A Putative ATP/GTP bindin 21.9 1.4E+02 0.0049 27.6 6.3 32 463-496 90-122 (134)
361 3nwj_A ATSK2; P loop, shikimat 21.9 61 0.0021 34.7 4.0 26 121-146 46-71 (250)
362 1ak2_A Adenylate kinase isoenz 21.8 50 0.0017 34.4 3.3 24 124-147 17-40 (233)
363 1c9k_A COBU, adenosylcobinamid 21.8 47 0.0016 33.9 2.9 43 126-174 2-44 (180)
364 3dl0_A Adenylate kinase; phosp 21.6 42 0.0014 34.3 2.6 21 125-145 2-22 (216)
365 3ice_A Transcription terminati 21.4 86 0.0029 36.2 5.2 34 124-157 175-208 (422)
366 1g3q_A MIND ATPase, cell divis 21.4 70 0.0024 33.0 4.3 33 127-161 7-39 (237)
367 3vkg_A Dynein heavy chain, cyt 21.3 95 0.0033 45.1 6.7 71 88-165 872-948 (3245)
368 1e4v_A Adenylate kinase; trans 21.2 46 0.0016 34.1 2.8 23 125-147 2-24 (214)
369 1hyq_A MIND, cell division inh 21.0 82 0.0028 33.2 4.9 32 127-160 7-38 (263)
370 2qor_A Guanylate kinase; phosp 21.0 46 0.0016 33.9 2.7 21 124-144 13-33 (204)
371 2j41_A Guanylate kinase; GMP, 21.0 46 0.0016 33.5 2.8 20 124-143 7-26 (207)
372 1rj9_A FTSY, signal recognitio 21.0 78 0.0027 34.9 4.8 34 125-160 104-137 (304)
373 3ug7_A Arsenical pump-driving 20.9 81 0.0028 35.4 5.0 33 126-160 29-61 (349)
374 2ykg_A Probable ATP-dependent 20.8 1.1E+02 0.0037 37.4 6.6 94 133-232 378-485 (696)
375 1zd8_A GTP:AMP phosphotransfer 20.8 43 0.0015 34.8 2.5 22 124-145 8-29 (227)
376 3tr0_A Guanylate kinase, GMP k 20.7 47 0.0016 33.4 2.7 19 125-143 9-27 (205)
377 2pt5_A Shikimate kinase, SK; a 20.6 57 0.002 31.6 3.3 22 125-146 2-23 (168)
378 2gza_A Type IV secretion syste 20.6 57 0.002 36.8 3.6 19 124-142 176-194 (361)
379 4a2w_A RIG-I, retinoic acid in 20.3 1.3E+02 0.0044 38.5 7.3 96 133-234 611-720 (936)
380 2plr_A DTMP kinase, probable t 20.3 57 0.002 32.8 3.3 23 125-147 6-28 (213)
381 1knq_A Gluconate kinase; ALFA/ 20.2 59 0.002 31.9 3.3 20 125-144 10-29 (175)
382 3f9v_A Minichromosome maintena 20.1 51 0.0017 40.1 3.3 18 125-142 329-346 (595)
383 2pbr_A DTMP kinase, thymidylat 20.1 59 0.002 32.2 3.3 21 126-146 3-23 (195)
384 1cke_A CK, MSSA, protein (cyti 20.1 57 0.002 33.4 3.3 22 125-146 7-28 (227)
385 3dmq_A RNA polymerase-associat 20.0 83 0.0029 40.5 5.4 80 148-236 498-584 (968)
No 1
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6e-47 Score=451.02 Aligned_cols=469 Identities=32% Similarity=0.534 Sum_probs=342.6
Q ss_pred CCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCC
Q 037446 102 WIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQ 181 (1165)
Q Consensus 102 ~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~ 181 (1165)
|.+|..++||+||.+++.++..+++|++++||+|||+++++++...+. .+.+++|||+|+++|+.||.+++.++++.+.
T Consensus 2 ~~~~~~~~l~~~Q~~~i~~~~~~~~ll~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 2 VLRRDLIQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CBCHHHHCCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred ccccCCCCccHHHHHHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 667888999999999999999889999999999999999999988776 4567999999999999999999999988777
Q ss_pred ceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEE
Q 037446 182 EWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRIL 261 (1165)
Q Consensus 182 ~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL 261 (1165)
..+..++|+.....+...+..++|+|+||++|.+.+..+.+.+.+|++|||||||++.+...+...++.+.......+++
T Consensus 81 ~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp GGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred hheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEE
Confidence 78999999998877777777899999999999999888778889999999999999997667777777776666677899
Q ss_pred EEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccc
Q 037446 262 ALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQ 341 (1165)
Q Consensus 262 ~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~ 341 (1165)
+|||||.++...+..++..+.+..+.........+..|+.........+........+...+...+......+...++..
T Consensus 161 ~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
T 1wp9_A 161 GLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLE 240 (494)
T ss_dssp EEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred EEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999998888899999999888888777778888899988888888888887777766666666555555555555432
Q ss_pred cccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhc---c--chh
Q 037446 342 NRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQG---S--FAR 416 (1165)
Q Consensus 342 ~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~---~--~~~ 416 (1165)
.... .+....+......+....... ..... ........+..+......+...+.......+....... . ...
T Consensus 241 ~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (494)
T 1wp9_A 241 SSSP-DIPKKEVLRAGQIINEEMAKG-NHDLR-GLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASK 317 (494)
T ss_dssp CCCT-TSCHHHHHHHHHHHHHHHTTT-CCSTT-THHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred ccCC-CcchhHHHHHHHHHHHHhhcc-ccchh-hHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhh
Confidence 2211 122222222211111110000 00000 11111111222222222333333332222222111100 0 000
Q ss_pred cccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeec
Q 037446 417 FMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIG 496 (1165)
Q Consensus 417 ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G 496 (1165)
-+.....+......+.........++|+..|.++|.+++. ...+.++||||+++..++.+++.|...| +.+..++|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~--~~~~~k~lVF~~~~~~~~~l~~~L~~~~--~~~~~~~g 393 (494)
T 1wp9_A 318 EIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQ--RKQNSKIIVFTNYRETAKKIVNELVKDG--IKAKRFVG 393 (494)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH--HCTTCCEEEECSCHHHHHHHHHHHHHTT--CCEEEECC
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhc--cCCCCeEEEEEccHHHHHHHHHHHHHcC--CCcEEEec
Confidence 0011122222333332333445678999999999988762 1257899999999999999999999998 88999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCccceecC
Q 037446 497 QSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFK 576 (1165)
Q Consensus 497 ~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv~v~~ 576 (1165)
......+++|+..+|.+++++|++|+.+|||||+++++|||+|++++||+||+|||+..|+||+||+||.|+|+++.++.
T Consensus 394 ~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~l~~ 473 (494)
T 1wp9_A 394 QASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMA 473 (494)
T ss_dssp SSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEE
T ss_pred cccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCCceEEEEEe
Confidence 77666667899999999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred hh
Q 037446 577 PE 578 (1165)
Q Consensus 577 ~d 578 (1165)
++
T Consensus 474 ~~ 475 (494)
T 1wp9_A 474 KG 475 (494)
T ss_dssp TT
T ss_pred cC
Confidence 64
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.4e-44 Score=428.73 Aligned_cols=360 Identities=21% Similarity=0.289 Sum_probs=278.7
Q ss_pred CCCCCCCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCC
Q 037446 75 GTEEFNEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFP 152 (1165)
Q Consensus 75 ~~~~~~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~ 152 (1165)
+...+.+..+|++ +|++.+++++...||..|++ +|.+++..++. +++|++++||+|||++|++|+++.+...+
T Consensus 48 ~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~-----iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 122 (434)
T 2db3_A 48 GSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTP-----IQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP 122 (434)
T ss_dssp SSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCH-----HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCH-----HHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcc
Confidence 4445556778999 99999999999999987655 55666666665 89999999999999999999998875432
Q ss_pred ------CCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHHHHHHcCccCCC
Q 037446 153 ------DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLEKDIQSGTCLMK 225 (1165)
Q Consensus 153 ------~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~~~l~~~~~~l~ 225 (1165)
..++|||+||++|+.||.++++++.......+..++|+.....+ ..+..+++|+|+||++|.+.+.++.+.+.
T Consensus 123 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~ 202 (434)
T 2db3_A 123 HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFE 202 (434)
T ss_dssp CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCT
T ss_pred cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccc
Confidence 45899999999999999999999876666777888888876543 45567899999999999999998888899
Q ss_pred CccEEEEcccccccCccchHHHHHHHHcC---CCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhcc
Q 037446 226 YLVCLVIDEAHRATGNYAYCTAIRELMSV---PVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHN 302 (1165)
Q Consensus 226 ~~~lVVIDEAHrl~~~~~~~~~l~~L~~~---~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~ 302 (1165)
++++|||||||++.+. +|...++.++.. ....++++||||++.. +..+... ++..
T Consensus 203 ~~~~lVlDEah~~~~~-gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~---~~~~~~~------------------~l~~ 260 (434)
T 2db3_A 203 DTRFVVLDEADRMLDM-GFSEDMRRIMTHVTMRPEHQTLMFSATFPEE---IQRMAGE------------------FLKN 260 (434)
T ss_dssp TCCEEEEETHHHHTST-TTHHHHHHHHHCTTSCSSCEEEEEESCCCHH---HHHHHHT------------------TCSS
T ss_pred cCCeEEEccHhhhhcc-CcHHHHHHHHHhcCCCCCceEEEEeccCCHH---HHHHHHH------------------hccC
Confidence 9999999999999985 788888888754 5678999999999754 3333221 1111
Q ss_pred CceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHH
Q 037446 303 RKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGA 382 (1165)
Q Consensus 303 ~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 382 (1165)
+ ..+.+...... . ..
T Consensus 261 ~--~~i~~~~~~~~--------------------------------~----------------~~--------------- 275 (434)
T 2db3_A 261 Y--VFVAIGIVGGA--------------------------------C----------------SD--------------- 275 (434)
T ss_dssp C--EEEEESSTTCC--------------------------------C----------------TT---------------
T ss_pred C--EEEEecccccc--------------------------------c----------------cc---------------
Confidence 1 01111000000 0 00
Q ss_pred HHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCC
Q 037446 383 LITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKH 462 (1165)
Q Consensus 383 L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~ 462 (1165)
+.+.+.......|...|+++|.+. .
T Consensus 276 ------------------------------------------------i~~~~~~~~~~~k~~~l~~~l~~~-------~ 300 (434)
T 2db3_A 276 ------------------------------------------------VKQTIYEVNKYAKRSKLIEILSEQ-------A 300 (434)
T ss_dssp ------------------------------------------------EEEEEEECCGGGHHHHHHHHHHHC-------C
T ss_pred ------------------------------------------------cceEEEEeCcHHHHHHHHHHHHhC-------C
Confidence 000001112235666777777653 3
Q ss_pred CeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCC
Q 037446 463 SRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVD 542 (1165)
Q Consensus 463 ~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd 542 (1165)
.++||||++++.|+.+++.|...| +.+..+|| ++++.+|.+++++|++|+.+|||||+++++|||+|+++
T Consensus 301 ~~~lVF~~t~~~a~~l~~~L~~~~--~~~~~lhg--------~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 301 DGTIVFVETKRGADFLASFLSEKE--FPTTSIHG--------DRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIK 370 (434)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTT--CCEEEEST--------TSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCC
T ss_pred CCEEEEEeCcHHHHHHHHHHHhCC--CCEEEEeC--------CCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCC
Confidence 359999999999999999999988 77777776 79999999999999999999999999999999999999
Q ss_pred EEEEeccCCCHHHHHHHHhhcCCCCC-CccceecChh-HHHHHHHHHHHHh
Q 037446 543 LVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFKPE-VQFVELSIEQYVS 591 (1165)
Q Consensus 543 ~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d-~~~~~~~Ie~~l~ 591 (1165)
+||+||+|+++..|+||+||+||.|+ |.++.++.++ ...+...+.+.+.
T Consensus 371 ~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~ 421 (434)
T 2db3_A 371 HVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILE 421 (434)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHH
Confidence 99999999999999999999999995 8888888743 3444445666553
No 3
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=9.8e-44 Score=434.13 Aligned_cols=473 Identities=20% Similarity=0.304 Sum_probs=255.4
Q ss_pred CCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCC---CCeEEEEecChhHHHHHHHHHHHHhCCC
Q 037446 105 PVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLVMQQIEACHNIVGIP 180 (1165)
Q Consensus 105 Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~---~~rvLILvPtr~La~Q~~~e~~kl~g~~ 180 (1165)
+..++|++||.+++.+++. +++|++++||+|||++|++|+++.+...+ .+++|||+||++|+.||.+++.+++...
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 3457899999999999975 89999999999999999999999987765 6789999999999999999999987655
Q ss_pred CceEEEEeCCCChHH-HHhhcCCccEEEEcHHHHHHHHHcCcc-CCCCccEEEEcccccccCccchHHHHHHHHcC----
Q 037446 181 QEWTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELMSV---- 254 (1165)
Q Consensus 181 ~~~v~~l~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l~~~~~-~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~---- 254 (1165)
...+..++|+..... +..+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.++..+...+..+...
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 162 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 162 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcc
Confidence 567888888876543 334456789999999999999988777 78899999999999999876676666555432
Q ss_pred -CCCCeEEEEccCCCCCh--------HHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEec--cchhHHHHHHHH
Q 037446 255 -PVQLRILALTATPGSKQ--------QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVE--MGQEAVEINNRI 323 (1165)
Q Consensus 255 -~~~~riL~LSATP~~~~--------~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~--~~~~~~~i~~~l 323 (1165)
....++|+|||||.... ..+..+...+....+.........+..|+..+....+.+. ...........+
T Consensus 163 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (556)
T 4a2p_A 163 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 242 (556)
T ss_dssp ---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHH
Confidence 45578999999995432 3444555666555555555566778888888777766665 233333333333
Q ss_pred HHHHhhHHHHHhhhcc---cccccccCCchhh-hhhhhh--hhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCC
Q 037446 324 WEVIRPYTSRLSAIGL---LQNRDYQTLSPVD-LLNSRD--KFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397 (1165)
Q Consensus 324 ~~~i~~~~~rl~~~~v---l~~~~~~~l~p~~-l~~~~~--~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g 397 (1165)
...+..+......... .....+..-.... +..... .....+...........+..+...+..+..........+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (556)
T 4a2p_A 243 MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 322 (556)
T ss_dssp HHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3333322222111000 0000000000000 000000 000000000000000000011111111111112222222
Q ss_pred chHHHHHHHHHHhhccchhcccchhh----HH-HHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCch
Q 037446 398 IRPAYEMLEEKLKQGSFARFMSKNED----IR-KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFR 472 (1165)
Q Consensus 398 ~~~~~~~L~~~~~~~~~~~ll~~~~~----~~-~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr 472 (1165)
.......+...+.......+...... +. ...............++|+..|.++|.+.+. ...+.++||||+++
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~--~~~~~k~lVF~~~~ 400 (556)
T 4a2p_A 323 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR--YNPQTRTLLFAKTR 400 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHH--HCTTCCEEEEESSH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhc--CCCCceEEEEEccH
Confidence 22222222222111000000000000 00 0011111112233568999999999988763 12578999999999
Q ss_pred HHHHHHHHHHHhcC--CCccceeeecccccccCCCCCHHHHHHHHHHHhc-CCceEEEEcccccccccccCCCEEEEecc
Q 037446 473 GSVRDIMNALATIG--DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA-GGYNVIVATSIGEEGLDIMEVDLVICFDA 549 (1165)
Q Consensus 473 ~~ae~L~~~L~~~g--~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~-g~~~VLVATda~~eGLDIp~vd~VI~~D~ 549 (1165)
.+++.|+..|...+ ..+++..++|.....+|++|++.+|.+++++|++ |+++|||||+++++|||+|+|++||+||+
T Consensus 401 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 401 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp HHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC
T ss_pred HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC
Confidence 99999999998761 1278888999888888999999999999999999 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCCCCCccceecChhHH
Q 037446 550 NVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQ 580 (1165)
Q Consensus 550 p~S~~~yiQriGRagR~GqGkiv~v~~~d~~ 580 (1165)
|||+..|+||+|| ||.++|.+++++.....
T Consensus 481 p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 481 SGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 510 (556)
T ss_dssp CSCHHHHHHC---------CCEEEEESCHHH
T ss_pred CCCHHHHHHhcCC-CCCCCceEEEEEeCcch
Confidence 9999999999999 99988998888876543
No 4
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.9e-43 Score=427.15 Aligned_cols=474 Identities=21% Similarity=0.287 Sum_probs=284.8
Q ss_pred CCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCC---CCeEEEEecChhHHHHHHHHHHHHhCCCCc
Q 037446 107 NVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~---~~rvLILvPtr~La~Q~~~e~~kl~g~~~~ 182 (1165)
+++|++||.+++.+++. +++|++++||+|||++|++|+++.+...+ .+++|||+||++|+.||.+++.+++.....
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 57899999999999975 89999999999999999999999987765 778999999999999999999998865567
Q ss_pred eEEEEeCCCChHH-HHhhcCCccEEEEcHHHHHHHHHcCcc-CCCCccEEEEcccccccCccchHHHHHHHHcC------
Q 037446 183 WTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELMSV------ 254 (1165)
Q Consensus 183 ~v~~l~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l~~~~~-~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~------ 254 (1165)
.+..++|+..... +..++.+++|+|+||++|...+..+.+ .+.++++|||||||++.+..++...+..++..
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcccc
Confidence 7888999886543 344556789999999999999988766 78899999999999999876677666555432
Q ss_pred CCCCeEEEEccCCCCCh--------HHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEecc--chhHHHHHHHHH
Q 037446 255 PVQLRILALTATPGSKQ--------QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM--GQEAVEINNRIW 324 (1165)
Q Consensus 255 ~~~~riL~LSATP~~~~--------~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~--~~~~~~i~~~l~ 324 (1165)
....++|+|||||.... ..+..+...+....+.........+..|+..+....+.+.. ..........+.
T Consensus 162 ~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T 3tbk_A 162 DPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM 241 (555)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHH
Confidence 24578999999996542 44555556666555555566667788888888777766652 222222222222
Q ss_pred HHHh----hHHHHHhhhcccccccccCCchhhhhhhhhhhhcC-CCCCCCcc-----cchhhHHHHHHHHHHHHHHHHHh
Q 037446 325 EVIR----PYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQA-PPPNLPQI-----KFGEVEAYFGALITLYHIRRLLS 394 (1165)
Q Consensus 325 ~~i~----~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~-~~~~i~~~-----~~~~l~~~~~~L~~l~~i~~ll~ 394 (1165)
..+. ..+..+.........++. +..+......+... .....+.. ....+..+...+..+.....+..
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 242 KETEKLAKDVSEELGKLFQIQNREFG---TQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHTSCHHHHGGGGCCSCCSS---SHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhccccccc---chhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2211 111111111111111111 10000000000000 00000000 00000001111111111111111
Q ss_pred hCCchHHHHHHHHHHhhccchhcccchh----hHHH-HHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEe
Q 037446 395 SHGIRPAYEMLEEKLKQGSFARFMSKNE----DIRK-VKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469 (1165)
Q Consensus 395 ~~g~~~~~~~L~~~~~~~~~~~ll~~~~----~~~~-v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~ 469 (1165)
..+.......+...+.......+..... .+.. ..............+.|+..|.++|.+.+. ...+.++||||
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~--~~~~~k~lVF~ 396 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYH--LKPETKTILFV 396 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHH--HCTTCCEEEEC
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhc--cCCCceEEEEe
Confidence 1222222222222111110000000000 0000 000001111223458999999999988764 23468999999
Q ss_pred CchHHHHHHHHHHHhcCC--CccceeeecccccccCCCCCHHHHHHHHHHHhc-CCceEEEEcccccccccccCCCEEEE
Q 037446 470 NFRGSVRDIMNALATIGD--LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA-GGYNVIVATSIGEEGLDIMEVDLVIC 546 (1165)
Q Consensus 470 ~sr~~ae~L~~~L~~~g~--~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~-g~~~VLVATda~~eGLDIp~vd~VI~ 546 (1165)
+++.+++.|+..|...+. .+.+..++|.....+|++|++++|.+++++|++ |+++|||||+++++|||+|+|++||+
T Consensus 397 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 397 KTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL 476 (555)
T ss_dssp SSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEE
T ss_pred CcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE
Confidence 999999999999998741 267888999888888999999999999999999 99999999999999999999999999
Q ss_pred eccCCCHHHHHHHHhhcCCCCCCccceecChhHHHHHHHH
Q 037446 547 FDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSI 586 (1165)
Q Consensus 547 ~D~p~S~~~yiQriGRagR~GqGkiv~v~~~d~~~~~~~I 586 (1165)
||+|||+..|+||+|| ||...|.+++++.++.......+
T Consensus 477 ~d~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 477 YEYVGNVIKMIQTRGR-GRARDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp ESCCSSCCCEECSSCC-CTTTSCEEEEEESCHHHHHHHHH
T ss_pred eCCCCCHHHHHHhcCc-CcCCCceEEEEEcCCCHHHHHHH
Confidence 9999999999999999 89977998888877655444333
No 5
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.4e-42 Score=438.68 Aligned_cols=468 Identities=20% Similarity=0.301 Sum_probs=265.8
Q ss_pred CCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCC---CCeEEEEecChhHHHHHHHHHHHHhCCCCc
Q 037446 107 NVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~---~~rvLILvPtr~La~Q~~~e~~kl~g~~~~ 182 (1165)
..+|++||.+++..++. +++|++++||+|||++|++|+++.+...+ ++++|||+|+++|+.||.+++++++.....
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCc
Confidence 35789999999999975 89999999999999999999999987765 779999999999999999999998765456
Q ss_pred eEEEEeCCCChHH-HHhhcCCccEEEEcHHHHHHHHHcCcc-CCCCccEEEEcccccccCccchHHHHHHHHcC-----C
Q 037446 183 WTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELMSV-----P 255 (1165)
Q Consensus 183 ~v~~l~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l~~~~~-~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~-----~ 255 (1165)
.+..++|+..... +..++.+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.+.|...+..+... .
T Consensus 326 ~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~ 405 (797)
T 4a2q_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSAS 405 (797)
T ss_dssp CEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhccCC
Confidence 7888999886543 345556899999999999999988777 78899999999999999876777776665542 5
Q ss_pred CCCeEEEEccCCCCCh--------HHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEec--cchhHHHHHHHHHH
Q 037446 256 VQLRILALTATPGSKQ--------QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVE--MGQEAVEINNRIWE 325 (1165)
Q Consensus 256 ~~~riL~LSATP~~~~--------~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~--~~~~~~~i~~~l~~ 325 (1165)
...++|+|||||.... ..+..+...+....+.........+..|+..+....+.+. ...........+..
T Consensus 406 ~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (797)
T 4a2q_A 406 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMS 485 (797)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHH
T ss_pred CCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHH
Confidence 5678999999996432 3455556666655555555566778888888877776665 22232233233322
Q ss_pred HHhhHHHHHhh---hcccccccccCCchhhhhhhhhhhhcC-CCCCCCcc-----cchhhHHHHHHHHHHHHHHHHHhhC
Q 037446 326 VIRPYTSRLSA---IGLLQNRDYQTLSPVDLLNSRDKFRQA-PPPNLPQI-----KFGEVEAYFGALITLYHIRRLLSSH 396 (1165)
Q Consensus 326 ~i~~~~~rl~~---~~vl~~~~~~~l~p~~l~~~~~~~~~~-~~~~i~~~-----~~~~l~~~~~~L~~l~~i~~ll~~~ 396 (1165)
.+..+...... ...+....+. +..+......+... ....++.. ....+..+...+..+.....+....
T Consensus 486 ~i~~~~~~~~~l~~l~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 562 (797)
T 4a2q_A 486 ETEALMRTIYSVDTLSQNSKKDFG---TQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (797)
T ss_dssp HHHHHHHHC------------CCS---SHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhHHhhhhcccccc---chhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 22222111100 0000000110 00000000000000 00000000 0000111111111111112222223
Q ss_pred CchHHHHHHHHHHhhccchhcccchhh----HH-HHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCc
Q 037446 397 GIRPAYEMLEEKLKQGSFARFMSKNED----IR-KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNF 471 (1165)
Q Consensus 397 g~~~~~~~L~~~~~~~~~~~ll~~~~~----~~-~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~s 471 (1165)
+.......+...+.......+...... +. ...............++|+..|.++|.+++. ...+.++||||++
T Consensus 563 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~--~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 563 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR--YNPQTRTLLFAKT 640 (797)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH--HCSSCCEEEEESS
T ss_pred cHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhc--cCCCCeEEEEECc
Confidence 333333332222111100000000000 00 0011111112233568999999999988663 2356899999999
Q ss_pred hHHHHHHHHHHHhcC--CCccceeeecccccccCCCCCHHHHHHHHHHHhc-CCceEEEEcccccccccccCCCEEEEec
Q 037446 472 RGSVRDIMNALATIG--DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA-GGYNVIVATSIGEEGLDIMEVDLVICFD 548 (1165)
Q Consensus 472 r~~ae~L~~~L~~~g--~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~-g~~~VLVATda~~eGLDIp~vd~VI~~D 548 (1165)
+..++.|+..|.... ..+++..++|.....+|++|++.+|.+++++|++ |+++|||||+++++|||+|+|++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 999999999998751 1278888999888888999999999999999999 9999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhhcCCCCCCccceecChhHH
Q 037446 549 ANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQ 580 (1165)
Q Consensus 549 ~p~S~~~yiQriGRagR~GqGkiv~v~~~d~~ 580 (1165)
+|||+..|+||+|| ||..+|++++++.....
T Consensus 721 ~p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (797)
T ss_dssp CCSCHHHHHTC--------CCCEEEEECCHHH
T ss_pred CCCCHHHHHHhcCC-CCCCCceEEEEEeCCcH
Confidence 99999999999999 99988998888876543
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2e-42 Score=407.51 Aligned_cols=361 Identities=20% Similarity=0.247 Sum_probs=274.3
Q ss_pred CCCCCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCC--
Q 037446 77 EEFNEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFP-- 152 (1165)
Q Consensus 77 ~~~~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~-- 152 (1165)
..+....+|++ +|++.+++++...||..| +++|.+++..+.. +++|+.+|||+|||++|++|+++.+....
T Consensus 9 ~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~-----~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~ 83 (417)
T 2i4i_A 9 NCPPHIESFSDVEMGEIIMGNIELTRYTRP-----TPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPG 83 (417)
T ss_dssp TCCCCCSSGGGSCCCHHHHHHHHHHTCCSC-----CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCC
T ss_pred cCCcccCCHhhCCCCHHHHHHHHHCCCCCC-----CHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcccc
Confidence 34455568999 999999999999999865 5566777777765 89999999999999999999988764322
Q ss_pred -----------------CCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHH
Q 037446 153 -----------------DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLE 214 (1165)
Q Consensus 153 -----------------~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~ 214 (1165)
..++|||+||++|+.||.+++.++.......+..++|+.....+ ..+..+++|+|+||++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~ 163 (417)
T 2i4i_A 84 EALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLV 163 (417)
T ss_dssp HHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHH
T ss_pred chhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHH
Confidence 25799999999999999999999887667778888888876543 445567899999999999
Q ss_pred HHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcC---CC--CCeEEEEccCCCCChHHHHHHHHhhcccccccc
Q 037446 215 KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV---PV--QLRILALTATPGSKQQTIQHIIDNLYISTLEYR 289 (1165)
Q Consensus 215 ~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~---~~--~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~ 289 (1165)
+.+..+.+.+.++++|||||||++.+. ++...+..+... +. ..++++||||++.... .++..
T Consensus 164 ~~l~~~~~~~~~~~~iViDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~---~~~~~--------- 230 (417)
T 2i4i_A 164 DMMERGKIGLDFCKYLVLDEADRMLDM-GFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQ---MLARD--------- 230 (417)
T ss_dssp HHHHTTSBCCTTCCEEEESSHHHHHHT-TCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHH---HHHHH---------
T ss_pred HHHHcCCcChhhCcEEEEEChhHhhcc-CcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHH---HHHHH---------
Confidence 999888888899999999999999875 677888888752 22 5789999999965432 22211
Q ss_pred CCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCC
Q 037446 290 NESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLP 369 (1165)
Q Consensus 290 ~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~ 369 (1165)
++..+. .+.+... .. .. ..+
T Consensus 231 ---------~~~~~~--~~~~~~~--~~--------------------------~~--------------------~~i- 250 (417)
T 2i4i_A 231 ---------FLDEYI--FLAVGRV--GS--------------------------TS--------------------ENI- 250 (417)
T ss_dssp ---------HCSSCE--EEEEC--------------------------------CC--------------------SSE-
T ss_pred ---------HcCCCE--EEEeCCC--CC--------------------------Cc--------------------cCc-
Confidence 111110 0000000 00 00 000
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHH
Q 037446 370 QIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLE 449 (1165)
Q Consensus 370 ~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~Lle 449 (1165)
.+.+.......|...+.+
T Consensus 251 --------------------------------------------------------------~~~~~~~~~~~~~~~l~~ 268 (417)
T 2i4i_A 251 --------------------------------------------------------------TQKVVWVEESDKRSFLLD 268 (417)
T ss_dssp --------------------------------------------------------------EEEEEECCGGGHHHHHHH
T ss_pred --------------------------------------------------------------eEEEEEeccHhHHHHHHH
Confidence 000000111345555666
Q ss_pred HHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEc
Q 037446 450 VLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVAT 529 (1165)
Q Consensus 450 lL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVAT 529 (1165)
++... ..+.++||||++++.++.+++.|...| +.+..+|| ++++++|.+++++|++|+.+|||||
T Consensus 269 ~l~~~-----~~~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~h~--------~~~~~~r~~~~~~f~~g~~~vlvaT 333 (417)
T 2i4i_A 269 LLNAT-----GKDSLTLVFVETKKGADSLEDFLYHEG--YACTSIHG--------DRSQRDREEALHQFRSGKSPILVAT 333 (417)
T ss_dssp HHHTC-----CTTCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECT--------TSCHHHHHHHHHHHHHTSSCEEEEC
T ss_pred HHHhc-----CCCCeEEEEECCHHHHHHHHHHHHHCC--CCeeEecC--------CCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 66432 247899999999999999999999988 77777766 8999999999999999999999999
Q ss_pred ccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHhc
Q 037446 530 SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVSR 592 (1165)
Q Consensus 530 da~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~~ 592 (1165)
+++++|||+|++++||+||+|+++..|+||+||+||.|+ |.+++++.+++......+.+.+..
T Consensus 334 ~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 334 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 397 (417)
T ss_dssp HHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred ChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999995 888888887766555566666543
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=7e-42 Score=402.62 Aligned_cols=356 Identities=19% Similarity=0.267 Sum_probs=275.4
Q ss_pred CCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHh-CCCCeEE
Q 037446 81 EGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRW-FPDGKIV 157 (1165)
Q Consensus 81 ~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~-~~~~rvL 157 (1165)
...+|++ +|++.+++++...||.. |+++|.+++..++. +++|++++||+|||++|++++++.+.. ....++|
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~-----~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~l 109 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEK-----PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQAL 109 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCS-----CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEE
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCC-----CCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEE
Confidence 3458999 99999999999999875 56778888888876 899999999999999999999987643 3457899
Q ss_pred EEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccc
Q 037446 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAH 236 (1165)
Q Consensus 158 ILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAH 236 (1165)
||+||++|+.||.+++.++.......+..+.|+.....+ ..+..+++|+|+||++|.+.+..+.+.+.++++|||||||
T Consensus 110 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah 189 (410)
T 2j0s_A 110 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD 189 (410)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred EEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHH
Confidence 999999999999999999876666778888888876544 3444578999999999999998888888999999999999
Q ss_pred cccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchh
Q 037446 237 RATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQE 315 (1165)
Q Consensus 237 rl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~ 315 (1165)
++.+. ++...+..+.. ++...++++||||++... ..++ ..++..+ +.+.....
T Consensus 190 ~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~---~~~~------------------~~~~~~~----~~~~~~~~ 243 (410)
T 2j0s_A 190 EMLNK-GFKEQIYDVYRYLPPATQVVLISATLPHEI---LEMT------------------NKFMTDP----IRILVKRD 243 (410)
T ss_dssp HHTST-TTHHHHHHHHTTSCTTCEEEEEESCCCHHH---HTTG------------------GGTCSSC----EEECCCGG
T ss_pred HHHhh-hhHHHHHHHHHhCccCceEEEEEcCCCHHH---HHHH------------------HHHcCCC----EEEEecCc
Confidence 99875 67677777665 456789999999996431 1111 1111111 00000000
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhh
Q 037446 316 AVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395 (1165)
Q Consensus 316 ~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~ 395 (1165)
. ....
T Consensus 244 ~-------------------------------~~~~-------------------------------------------- 248 (410)
T 2j0s_A 244 E-------------------------------LTLE-------------------------------------------- 248 (410)
T ss_dssp G-------------------------------CSCT--------------------------------------------
T ss_pred c-------------------------------ccCC--------------------------------------------
Confidence 0 0000
Q ss_pred CCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHH
Q 037446 396 HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475 (1165)
Q Consensus 396 ~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~a 475 (1165)
++. .. .........|+..+.+++... ...++||||++++.+
T Consensus 249 -~~~----------------~~----------------~~~~~~~~~k~~~l~~~~~~~------~~~~~lVf~~~~~~~ 289 (410)
T 2j0s_A 249 -GIK----------------QF----------------FVAVEREEWKFDTLCDLYDTL------TITQAVIFCNTKRKV 289 (410)
T ss_dssp -TEE----------------EE----------------EEEESSTTHHHHHHHHHHHHH------TSSEEEEECSSHHHH
T ss_pred -Cce----------------EE----------------EEEeCcHHhHHHHHHHHHHhc------CCCcEEEEEcCHHHH
Confidence 000 00 000011123556666666543 246999999999999
Q ss_pred HHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHH
Q 037446 476 RDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555 (1165)
Q Consensus 476 e~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~ 555 (1165)
+.+++.|...| +.+..+|| ++++.+|..++++|++|+.+|||||+++++|||+|++++||+||+|+++..
T Consensus 290 ~~l~~~L~~~~--~~~~~~h~--------~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~ 359 (410)
T 2j0s_A 290 DWLTEKMREAN--FTVSSMHG--------DMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL 359 (410)
T ss_dssp HHHHHHHHHTT--CCCEEECT--------TSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHH
T ss_pred HHHHHHHHhCC--CceEEeeC--------CCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHH
Confidence 99999999988 77777766 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHh
Q 037446 556 MIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVS 591 (1165)
Q Consensus 556 yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~ 591 (1165)
|+||+||+||.|+ |.++.++.++.......+++++.
T Consensus 360 ~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 396 (410)
T 2j0s_A 360 YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYS 396 (410)
T ss_dssp HHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred HHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhC
Confidence 9999999999995 88888888777666667777764
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.4e-42 Score=394.86 Aligned_cols=350 Identities=20% Similarity=0.294 Sum_probs=275.4
Q ss_pred CCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc--CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEE
Q 037446 81 EGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF--SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157 (1165)
Q Consensus 81 ~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~--rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvL 157 (1165)
+..+|++ +|++.+.+.+...||.. |+++|.+++..++. +++++.+|||+|||++|+++++..+...++.++|
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~-----~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~l 78 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEK-----PTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAI 78 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCS-----CCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEE
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCC-----CCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEE
Confidence 3468999 99999999999999974 67788888888775 5899999999999999999999887666677999
Q ss_pred EEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccccc
Q 037446 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHR 237 (1165)
Q Consensus 158 ILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHr 237 (1165)
||+|+++|+.||.+++.++++.....+..+.|+...........+++|+|+||++|.+.+..+.+.+.++++|||||||+
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE 158 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH
Confidence 99999999999999999998877777888898888665544445899999999999999988778889999999999999
Q ss_pred ccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhH
Q 037446 238 ATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA 316 (1165)
Q Consensus 238 l~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~ 316 (1165)
+.+. ++...+..++. .....++++|||||.+.. ..++.. ++... ..+......
T Consensus 159 ~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~---~~~~~~------------------~~~~~--~~~~~~~~~-- 212 (367)
T 1hv8_A 159 MLNM-GFIKDVEKILNACNKDKRILLFSATMPREI---LNLAKK------------------YMGDY--SFIKAKINA-- 212 (367)
T ss_dssp HHTT-TTHHHHHHHHHTSCSSCEEEEECSSCCHHH---HHHHHH------------------HCCSE--EEEECCSSS--
T ss_pred hhhh-chHHHHHHHHHhCCCCceEEEEeeccCHHH---HHHHHH------------------HcCCC--eEEEecCCC--
Confidence 9875 56666666654 556789999999997532 222111 11110 000000000
Q ss_pred HHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhC
Q 037446 317 VEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSH 396 (1165)
Q Consensus 317 ~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~ 396 (1165)
.+
T Consensus 213 ------------------------------~~------------------------------------------------ 214 (367)
T 1hv8_A 213 ------------------------------NI------------------------------------------------ 214 (367)
T ss_dssp ------------------------------SS------------------------------------------------
T ss_pred ------------------------------Cc------------------------------------------------
Confidence 00
Q ss_pred CchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHH
Q 037446 397 GIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVR 476 (1165)
Q Consensus 397 g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae 476 (1165)
.+.........|+..+.+++. ..+.++||||++++.++
T Consensus 215 -----------------------------------~~~~~~~~~~~~~~~l~~~l~-------~~~~~~lvf~~~~~~~~ 252 (367)
T 1hv8_A 215 -----------------------------------EQSYVEVNENERFEALCRLLK-------NKEFYGLVFCKTKRDTK 252 (367)
T ss_dssp -----------------------------------EEEEEECCGGGHHHHHHHHHC-------STTCCEEEECSSHHHHH
T ss_pred -----------------------------------eEEEEEeChHHHHHHHHHHHh-------cCCCcEEEEECCHHHHH
Confidence 000000111345555655553 24679999999999999
Q ss_pred HHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHH
Q 037446 477 DIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRM 556 (1165)
Q Consensus 477 ~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~y 556 (1165)
.+++.|+..| +.+..+|| +++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|+|+..|
T Consensus 253 ~l~~~L~~~~--~~~~~~~~--------~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~ 322 (367)
T 1hv8_A 253 ELASMLRDIG--FKAGAIHG--------DLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESY 322 (367)
T ss_dssp HHHHHHHHTT--CCEEEECS--------SSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHH
T ss_pred HHHHHHHhcC--CCeEEeeC--------CCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHh
Confidence 9999999988 77776766 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC-CCccceecChhHHHHHHHHHHHHh
Q 037446 557 IQRMGRTGRKH-DGRIPHIFKPEVQFVELSIEQYVS 591 (1165)
Q Consensus 557 iQriGRagR~G-qGkiv~v~~~d~~~~~~~Ie~~l~ 591 (1165)
+||+||+||.| +|.++.++.+++......|++.+.
T Consensus 323 ~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 358 (367)
T 1hv8_A 323 MHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMK 358 (367)
T ss_dssp HHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHT
T ss_pred hhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhC
Confidence 99999999999 588888888776656567766653
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.5e-41 Score=396.40 Aligned_cols=355 Identities=19% Similarity=0.222 Sum_probs=273.6
Q ss_pred CCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeE
Q 037446 80 NEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKI 156 (1165)
Q Consensus 80 ~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rv 156 (1165)
....+|++ +|++.+++++...||. +|++||.+++..+.. +++++.+|||+|||++|+++++..+... .+.++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~-----~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~ 92 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFE-----KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQA 92 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCC-----SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCC-----CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccE
Confidence 34568999 9999999999999987 467788899888876 8999999999999999999999887543 34589
Q ss_pred EEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccc
Q 037446 157 VFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEA 235 (1165)
Q Consensus 157 LILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEA 235 (1165)
|||+|+++|+.||.+.+++++......+..+.|+...... ..+...++|+|+||++|.+.+......+.++++||||||
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 93 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred EEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 9999999999999999999877666778888888876543 344567899999999999998887778899999999999
Q ss_pred ccccCccchHHHHHHHHcC-CCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccch
Q 037446 236 HRATGNYAYCTAIRELMSV-PVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQ 314 (1165)
Q Consensus 236 Hrl~~~~~~~~~l~~L~~~-~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~ 314 (1165)
|++.+. .+...+..+... +...++++||||++... ...+... +..+. .+....
T Consensus 173 H~~~~~-~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~---~~~~~~~------------------~~~~~----~~~~~~ 226 (400)
T 1s2m_A 173 DKMLSR-DFKTIIEQILSFLPPTHQSLLFSATFPLTV---KEFMVKH------------------LHKPY----EINLME 226 (400)
T ss_dssp HHHSSH-HHHHHHHHHHTTSCSSCEEEEEESCCCHHH---HHHHHHH------------------CSSCE----EESCCS
T ss_pred hHhhhh-chHHHHHHHHHhCCcCceEEEEEecCCHHH---HHHHHHH------------------cCCCe----EEEecc
Confidence 999874 677777777754 45678999999986432 2222111 11000 000000
Q ss_pred hHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHh
Q 037446 315 EAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLS 394 (1165)
Q Consensus 315 ~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~ 394 (1165)
. ..... +
T Consensus 227 ~--------------------------------~~~~~---------------~-------------------------- 233 (400)
T 1s2m_A 227 E--------------------------------LTLKG---------------I-------------------------- 233 (400)
T ss_dssp S--------------------------------CBCTT---------------E--------------------------
T ss_pred c--------------------------------cccCC---------------c--------------------------
Confidence 0 00000 0
Q ss_pred hCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHH
Q 037446 395 SHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS 474 (1165)
Q Consensus 395 ~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ 474 (1165)
.+.........|+..+..++... ...++||||++++.
T Consensus 234 -------------------------------------~~~~~~~~~~~k~~~l~~~~~~~------~~~~~lVf~~~~~~ 270 (400)
T 1s2m_A 234 -------------------------------------TQYYAFVEERQKLHCLNTLFSKL------QINQAIIFCNSTNR 270 (400)
T ss_dssp -------------------------------------EEEEEECCGGGHHHHHHHHHHHS------CCSEEEEECSSHHH
T ss_pred -------------------------------------eeEEEEechhhHHHHHHHHHhhc------CCCcEEEEEecHHH
Confidence 00000011124555555555432 46799999999999
Q ss_pred HHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHH
Q 037446 475 VRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPL 554 (1165)
Q Consensus 475 ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~ 554 (1165)
++.+++.|...| +.+..+|| ++++.+|..+++.|++|+.+|||||+++++|||+|++++||++|+|+++.
T Consensus 271 ~~~l~~~L~~~~--~~~~~~~~--------~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~ 340 (400)
T 1s2m_A 271 VELLAKKITDLG--YSCYYSHA--------RMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAE 340 (400)
T ss_dssp HHHHHHHHHHHT--CCEEEECT--------TSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHH
T ss_pred HHHHHHHHHhcC--CCeEEecC--------CCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHH
Confidence 999999999988 67766665 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHh
Q 037446 555 RMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVS 591 (1165)
Q Consensus 555 ~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~ 591 (1165)
.|+||+||+||.|+ |.++.++.+++......|++.+.
T Consensus 341 ~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 378 (400)
T 1s2m_A 341 TYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELG 378 (400)
T ss_dssp HHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred HHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhC
Confidence 99999999999995 88888888877666667777653
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.9e-41 Score=438.17 Aligned_cols=462 Identities=20% Similarity=0.313 Sum_probs=266.3
Q ss_pred CCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCC---CCeEEEEecChhHHHHHHHHHHHHhCCCCc
Q 037446 107 NVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~---~~rvLILvPtr~La~Q~~~e~~kl~g~~~~ 182 (1165)
.++|++||.+++.+++. +++|++++||+|||++|++|+++.+...+ ++++|||+||++|+.||.+++++++.....
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 45799999999999975 89999999999999999999998877655 678999999999999999999998865567
Q ss_pred eEEEEeCCCChHH-HHhhcCCccEEEEcHHHHHHHHHcCcc-CCCCccEEEEcccccccCccchHHHHHHHHcC-----C
Q 037446 183 WTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELMSV-----P 255 (1165)
Q Consensus 183 ~v~~l~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l~~~~~-~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~-----~ 255 (1165)
.+..++|+..... ...++.+++|+|+||++|.+.+....+ .+.++++|||||||++.+.+.|...+..+... .
T Consensus 326 ~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~ 405 (936)
T 4a2w_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSAS 405 (936)
T ss_dssp CEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCS
T ss_pred eEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhccCC
Confidence 7888999876543 234446789999999999999987766 68889999999999999876777777666542 4
Q ss_pred CCCeEEEEccCCCCCh--------HHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEecc--chhHHHHHHHHHH
Q 037446 256 VQLRILALTATPGSKQ--------QTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM--GQEAVEINNRIWE 325 (1165)
Q Consensus 256 ~~~riL~LSATP~~~~--------~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~--~~~~~~i~~~l~~ 325 (1165)
...++|+|||||.... ..+..+...|....+.........+..|+..+....+.+.. ..........+..
T Consensus 406 ~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~ 485 (936)
T 4a2w_A 406 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMS 485 (936)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHH
T ss_pred CcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHHH
Confidence 5578999999995432 34555666666656666666677888888887777666652 2333333333333
Q ss_pred HHhhHHHHHhhhc---ccccccccCCchhhhh----hhhhhhhcCCCCCCCcc-----cchhhHHHHHHHHHHHHHHHHH
Q 037446 326 VIRPYTSRLSAIG---LLQNRDYQTLSPVDLL----NSRDKFRQAPPPNLPQI-----KFGEVEAYFGALITLYHIRRLL 393 (1165)
Q Consensus 326 ~i~~~~~rl~~~~---vl~~~~~~~l~p~~l~----~~~~~~~~~~~~~i~~~-----~~~~l~~~~~~L~~l~~i~~ll 393 (1165)
.+..+........ ......+ .+..+. ........ ..++.. ....+..+...+..+.....+.
T Consensus 486 ~i~~~~~~~l~~~~l~~~~~~~~---g~~~y~~~l~~l~k~~~~---~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 486 ETEALMRTIAYVDTLSQNSKKDF---GTQNYEHWIVVTQRKCRL---LQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHC------------CC---SSHHHHHHHHHHHHHHHH---CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhcccccc---chHHHHHHHHHHHHHHHH---hcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3222221110000 0000000 000000 00000000 000000 0000001111111111111122
Q ss_pred hhCCchHHHHHHHHHHhhccchhcccchh----hHH-HHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEE
Q 037446 394 SSHGIRPAYEMLEEKLKQGSFARFMSKNE----DIR-KVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIF 468 (1165)
Q Consensus 394 ~~~g~~~~~~~L~~~~~~~~~~~ll~~~~----~~~-~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF 468 (1165)
...+.......+...+.......+..... .+. ...............++|+..|.++|.+.+. ...+.++|||
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~--~~~~~rvLIF 637 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR--YNPQTRTLLF 637 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTT--SCTTCCEEEE
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhc--cCCCCeEEEE
Confidence 22233322222222211110000000000 000 1111111122233468999999999988763 2357899999
Q ss_pred eCchHHHHHHHHHHHhc----CCCccceeeecccccccCCCCCHHHHHHHHHHHhc-CCceEEEEcccccccccccCCCE
Q 037446 469 SNFRGSVRDIMNALATI----GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA-GGYNVIVATSIGEEGLDIMEVDL 543 (1165)
Q Consensus 469 ~~sr~~ae~L~~~L~~~----g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~-g~~~VLVATda~~eGLDIp~vd~ 543 (1165)
|+++.+++.|+..|... + +++..++|.....+|++|++.+|.+++++|++ |+++|||||+++++|||+|+|++
T Consensus 638 ~~t~~~ae~L~~~L~~~~~l~~--ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~ 715 (936)
T 4a2w_A 638 AKTRALVSALKKCMEENPILNY--IKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNL 715 (936)
T ss_dssp ESSHHHHHHHHHHHHHCSTTSS--CCCEEC----------------------------CCSEEEEECC------CCCCSE
T ss_pred eCCHHHHHHHHHHHhhCccccc--cceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCE
Confidence 99999999999999986 4 88889999888888999999999999999998 99999999999999999999999
Q ss_pred EEEeccCCCHHHHHHHHhhcCCCCCCccceecChhH
Q 037446 544 VICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKPEV 579 (1165)
Q Consensus 544 VI~~D~p~S~~~yiQriGRagR~GqGkiv~v~~~d~ 579 (1165)
||+||+|||+..|+||+|| ||..+|++++++....
T Consensus 716 VI~yD~p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t 750 (936)
T 4a2w_A 716 VVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTE 750 (936)
T ss_dssp EEEESCCSCSHHHHCC--------CCCEEEEESCHH
T ss_pred EEEeCCCCCHHHHHHhcCC-CCCCCCEEEEEEeCCC
Confidence 9999999999999999999 9998899888876643
No 11
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.3e-41 Score=392.47 Aligned_cols=354 Identities=16% Similarity=0.196 Sum_probs=270.5
Q ss_pred CCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCC-CCeEEEE
Q 037446 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFP-DGKIVFA 159 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~-~~rvLIL 159 (1165)
.+|++ +|++.+++++...||. +|++||.+++..+.. +++++.+|||+|||++|+++++..+.... ..++|||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~-----~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFE-----HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCC-----SCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCC-----CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEE
Confidence 46988 9999999999999886 477888999998876 89999999999999999999998765433 4589999
Q ss_pred ecChhHHHHHHHHHHHHhCCC-CceEEEEeCCCChHHHHhhc--CCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccc
Q 037446 160 APSRPLVMQQIEACHNIVGIP-QEWTIDMTGQISPTKRASFW--KTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAH 236 (1165)
Q Consensus 160 vPtr~La~Q~~~e~~kl~g~~-~~~v~~l~G~~~~~~~~~l~--~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAH 236 (1165)
+|+++|+.||.+++.++.+.. ...+..+.|+.....+.... ..++|+|+||++|...+....+.+.++++|||||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999987543 57788889988765543222 347999999999999988877788999999999999
Q ss_pred cccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchh
Q 037446 237 RATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQE 315 (1165)
Q Consensus 237 rl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~ 315 (1165)
++.+..++...+..+.. .+...++++||||+......+ +.. ++..+. .+.+....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~------------------~~~~~~--~~~~~~~~- 218 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPV---CRK------------------FMQDPM--EIFVDDET- 218 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHH---HHH------------------HCSSCE--EEECCCCC-
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHH---HHH------------------HcCCCe--EEEecCcc-
Confidence 99886577777777765 455789999999998764322 211 111110 00000000
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhh
Q 037446 316 AVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395 (1165)
Q Consensus 316 ~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~ 395 (1165)
. .... .+
T Consensus 219 -----------------------------~--~~~~---------------~~--------------------------- 225 (391)
T 1xti_A 219 -----------------------------K--LTLH---------------GL--------------------------- 225 (391)
T ss_dssp -----------------------------C--CCCT---------------TC---------------------------
T ss_pred -----------------------------c--cCcc---------------cc---------------------------
Confidence 0 0000 00
Q ss_pred CCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHH
Q 037446 396 HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475 (1165)
Q Consensus 396 ~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~a 475 (1165)
.+.........|...+.+++... .+.++||||++++.+
T Consensus 226 ------------------------------------~~~~~~~~~~~~~~~l~~~l~~~------~~~~~lvf~~~~~~~ 263 (391)
T 1xti_A 226 ------------------------------------QQYYVKLKDNEKNRKLFDLLDVL------EFNQVVIFVKSVQRC 263 (391)
T ss_dssp ------------------------------------EEEEEECCGGGHHHHHHHHHHHS------CCSEEEEECSCHHHH
T ss_pred ------------------------------------eEEEEEcCchhHHHHHHHHHHhc------CCCcEEEEeCcHHHH
Confidence 00000011234555566666542 468999999999999
Q ss_pred HHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHH
Q 037446 476 RDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLR 555 (1165)
Q Consensus 476 e~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~ 555 (1165)
+.+++.|...| +.+..+|| ++++.+|.++++.|++|+.+|||||+++++|+|+|++++||++|+|+++..
T Consensus 264 ~~l~~~L~~~~--~~~~~~~~--------~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~ 333 (391)
T 1xti_A 264 IALAQLLVEQN--FPAIAIHR--------GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDT 333 (391)
T ss_dssp HHHHHHHHHTT--CCEEEECT--------TSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHH
T ss_pred HHHHHHHHhCC--CcEEEEeC--------CCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHH
Confidence 99999999988 77777766 799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCC-CccceecChh-HHHHHHHHHHHH
Q 037446 556 MIQRMGRTGRKHD-GRIPHIFKPE-VQFVELSIEQYV 590 (1165)
Q Consensus 556 yiQriGRagR~Gq-Gkiv~v~~~d-~~~~~~~Ie~~l 590 (1165)
|+||+||+||.|+ |.+++++.++ ...+...+++.+
T Consensus 334 ~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (391)
T 1xti_A 334 YLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRF 370 (391)
T ss_dssp HHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHT
T ss_pred HHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHh
Confidence 9999999999995 7777777654 444555666554
No 12
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4.6e-41 Score=423.10 Aligned_cols=473 Identities=20% Similarity=0.297 Sum_probs=257.7
Q ss_pred CCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCC---CeEEEEecChhHHHHHHHHHHHHhCCCCce
Q 037446 108 VPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPD---GKIVFAAPSRPLVMQQIEACHNIVGIPQEW 183 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~---~rvLILvPtr~La~Q~~~e~~kl~g~~~~~ 183 (1165)
.+||+||.+++.+++. +++|++++||+|||++|++++++.+...+. +++|||+||++|+.||.+++++++......
T Consensus 12 ~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 91 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYR 91 (696)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCce
Confidence 3688999999999975 899999999999999999999988866543 789999999999999999999998655677
Q ss_pred EEEEeCCCCh-HHHHhhcCCccEEEEcHHHHHHHHHcCcc-CCCCccEEEEcccccccCccchHHHHHHHHc------CC
Q 037446 184 TIDMTGQISP-TKRASFWKTKRVFFVTPQVLEKDIQSGTC-LMKYLVCLVIDEAHRATGNYAYCTAIRELMS------VP 255 (1165)
Q Consensus 184 v~~l~G~~~~-~~~~~l~~~~dIlVaTpq~L~~~l~~~~~-~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~------~~ 255 (1165)
+..++|+... ..+..++.+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.+.|...+..++. ..
T Consensus 92 v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~ 171 (696)
T 2ykg_A 92 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG 171 (696)
T ss_dssp EEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCS
T ss_pred EEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCC
Confidence 8888988754 33445556899999999999999988766 6889999999999999987778777665543 23
Q ss_pred CCCeEEEEccCCCCC--------hHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhH--HHHHHHHHH
Q 037446 256 VQLRILALTATPGSK--------QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEA--VEINNRIWE 325 (1165)
Q Consensus 256 ~~~riL~LSATP~~~--------~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~--~~i~~~l~~ 325 (1165)
...++|+|||||... ...+..++..+....+.........+..|...+......+...... ......+..
T Consensus 172 ~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~ 251 (696)
T 2ykg_A 172 PLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 251 (696)
T ss_dssp CCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHH
T ss_pred CCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHH
Confidence 567999999999732 2344444555555555555555667777777766555444332111 111111111
Q ss_pred HHhhHHHHHhh----hcccccccccCCchhhhhhhhhhhhcC-CCCCCCcc-cchhh----HHHHHHHHHHHHHHHHHhh
Q 037446 326 VIRPYTSRLSA----IGLLQNRDYQTLSPVDLLNSRDKFRQA-PPPNLPQI-KFGEV----EAYFGALITLYHIRRLLSS 395 (1165)
Q Consensus 326 ~i~~~~~rl~~----~~vl~~~~~~~l~p~~l~~~~~~~~~~-~~~~i~~~-~~~~l----~~~~~~L~~l~~i~~ll~~ 395 (1165)
.+......+.. .......+ +....+.......... ....++.. ....+ ..+...+........+...
T Consensus 252 ~i~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~ 328 (696)
T 2ykg_A 252 DTESLAKRICKDLENLSQIQNRE---FGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEH 328 (696)
T ss_dssp HHHHHHHHHSTTGGGSSSCCSCC---SSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccc---ccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccch
Confidence 11111111100 00000011 1111110000000000 00000000 00000 0000000000000000011
Q ss_pred CCchHHHHHHHHHHhhccchhcccchhhHHH----HHHHHHh-hhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeC
Q 037446 396 HGIRPAYEMLEEKLKQGSFARFMSKNEDIRK----VKLLMQQ-SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSN 470 (1165)
Q Consensus 396 ~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~----v~~~l~~-~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~ 470 (1165)
.........+...+..............+.. ....+.. .......+.|+..|.++|.+.+. ...+.++||||+
T Consensus 329 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~--~~~~~~~IIF~~ 406 (696)
T 2ykg_A 329 ARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYH--LNPETITILFVK 406 (696)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHT--TCTTCCEEEECS
T ss_pred hhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc--cCCCCcEEEEeC
Confidence 1111111111111111000000000000000 0000001 11112357899999999987653 235679999999
Q ss_pred chHHHHHHHHHHHhcCC--CccceeeecccccccCCCCCHHHHHHHHHHHhc-CCceEEEEcccccccccccCCCEEEEe
Q 037446 471 FRGSVRDIMNALATIGD--LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA-GGYNVIVATSIGEEGLDIMEVDLVICF 547 (1165)
Q Consensus 471 sr~~ae~L~~~L~~~g~--~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~-g~~~VLVATda~~eGLDIp~vd~VI~~ 547 (1165)
++..++.|++.|...+. .+++..++|+.....|++|++++|.+++++|++ |+.+|||||+++++|||+|+|++||+|
T Consensus 407 ~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~ 486 (696)
T 2ykg_A 407 TRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILY 486 (696)
T ss_dssp CHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEEE
T ss_pred cHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEe
Confidence 99999999999998752 267888888777777899999999999999998 999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHhhcCCCCCCccceecChhHHHHHHHH
Q 037446 548 DANVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSI 586 (1165)
Q Consensus 548 D~p~S~~~yiQriGRagR~GqGkiv~v~~~d~~~~~~~I 586 (1165)
|+|+|+..|+||+|| ||...|.+++++..+.......+
T Consensus 487 d~p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 487 EYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp SCC--CCCC----------CCCEEEEEESCHHHHHHHHH
T ss_pred CCCCCHHHHHHhhcc-CcCCCceEEEEecCCCHHHHHHH
Confidence 999999999999999 99988998888877654333333
No 13
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.7e-41 Score=398.88 Aligned_cols=357 Identities=19% Similarity=0.242 Sum_probs=260.6
Q ss_pred CCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeE
Q 037446 80 NEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKI 156 (1165)
Q Consensus 80 ~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rv 156 (1165)
....+|++ ++++.+++.+...+|.. +++||.+++..++. +++|+.++||+|||++|++++++.+... ...++
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~-----~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~ 111 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEK-----PSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQA 111 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCS-----CCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCE
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCC-----CCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeE
Confidence 33457888 99999999999999875 56778888877776 7999999999999999999999887543 45689
Q ss_pred EEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH-Hhhc-CCccEEEEcHHHHHHHHHcCccCCCCccEEEEcc
Q 037446 157 VFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR-ASFW-KTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDE 234 (1165)
Q Consensus 157 LILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~-~~l~-~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDE 234 (1165)
|||+|+++|+.||.+.+.+++......+..+.|+...... ..+. ..++|+|+||++|.+.+....+.+.++++|||||
T Consensus 112 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDE 191 (414)
T 3eiq_A 112 LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 191 (414)
T ss_dssp EEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECS
T ss_pred EEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEEC
Confidence 9999999999999999999876666677788888775443 2222 5689999999999999988888889999999999
Q ss_pred cccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccc
Q 037446 235 AHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMG 313 (1165)
Q Consensus 235 AHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~ 313 (1165)
||++.+. ++...+..++. +....++++||||+.... ..++.. ++..+. .+...
T Consensus 192 ah~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~---~~~~~~------------------~~~~~~----~~~~~ 245 (414)
T 3eiq_A 192 ADEMLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDV---LEVTKK------------------FMRDPI----RILVK 245 (414)
T ss_dssp HHHHHHT-TTHHHHHHHHTTSCTTCEEEEECSCCCHHH---HHHHTT------------------TCSSCE----EECCC
T ss_pred HHHhhcc-CcHHHHHHHHHhCCCCCeEEEEEEecCHHH---HHHHHH------------------HcCCCE----EEEec
Confidence 9999875 66666666654 567889999999996432 222211 111110 00000
Q ss_pred hhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 037446 314 QEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLL 393 (1165)
Q Consensus 314 ~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll 393 (1165)
.. ..... .+..
T Consensus 246 ~~-------------------------------~~~~~---------------~~~~----------------------- 256 (414)
T 3eiq_A 246 KE-------------------------------ELTLE---------------GIRQ----------------------- 256 (414)
T ss_dssp CC-------------------------------CCCTT---------------SCCE-----------------------
T ss_pred CC-------------------------------ccCCC---------------CceE-----------------------
Confidence 00 00000 0000
Q ss_pred hhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchH
Q 037446 394 SSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRG 473 (1165)
Q Consensus 394 ~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~ 473 (1165)
..........|+..+.+++... ...++||||++++
T Consensus 257 ---------------------------------------~~~~~~~~~~~~~~l~~~~~~~------~~~~~lvf~~~~~ 291 (414)
T 3eiq_A 257 ---------------------------------------FYINVEREEWKLDTLCDLYETL------TITQAVIFINTRR 291 (414)
T ss_dssp ---------------------------------------EEEECSSSTTHHHHHHHHHHSS------CCSSCEEECSCHH
T ss_pred ---------------------------------------EEEEeChHHhHHHHHHHHHHhC------CCCcEEEEeCCHH
Confidence 0000011223556666666432 4679999999999
Q ss_pred HHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCH
Q 037446 474 SVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSP 553 (1165)
Q Consensus 474 ~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~ 553 (1165)
.++.+++.|...+ +.+..+|| ++++.+|..+++.|++|+.+|||||+++++|||+|++++||++|+|+++
T Consensus 292 ~~~~l~~~l~~~~--~~~~~~h~--------~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~ 361 (414)
T 3eiq_A 292 KVDWLTEKMHARD--FTVSAMHG--------DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNR 361 (414)
T ss_dssp HHHHHHHHHHTTT--CCCEEC-----------CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSST
T ss_pred HHHHHHHHHHhcC--CeEEEecC--------CCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCH
Confidence 9999999999887 67666665 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHh
Q 037446 554 LRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVS 591 (1165)
Q Consensus 554 ~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~ 591 (1165)
..|+||+||+||.|+ |.++.++.++.......+++++.
T Consensus 362 ~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~ 400 (414)
T 3eiq_A 362 ENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYN 400 (414)
T ss_dssp HHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTT
T ss_pred HHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHc
Confidence 999999999999995 88888888877666667776653
No 14
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.6e-40 Score=385.27 Aligned_cols=353 Identities=18% Similarity=0.216 Sum_probs=265.5
Q ss_pred CCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc---CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeE
Q 037446 82 GSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF---SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKI 156 (1165)
Q Consensus 82 ~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~---rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rv 156 (1165)
..+|++ +|++.+++++...+|.. |+++|.+++..++. +++|+++|||+|||++|+++++..+... ..+++
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~-----~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~ 78 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQK-----PSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQA 78 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCS-----CCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCE
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCC-----CCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccE
Confidence 358999 99999999999999874 67778888888876 7899999999999999999998876543 45689
Q ss_pred EEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccc
Q 037446 157 VFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAH 236 (1165)
Q Consensus 157 LILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAH 236 (1165)
|||+|+++|+.||.+.+.++.......+..+.|+..... ...+++|+|+||++|...+......+.++++|||||||
T Consensus 79 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 155 (395)
T 3pey_A 79 ICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN---KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEAD 155 (395)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT---SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHH
T ss_pred EEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh---ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChh
Confidence 999999999999999999987666666777776654322 22468999999999999998888889999999999999
Q ss_pred cccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchh
Q 037446 237 RATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQE 315 (1165)
Q Consensus 237 rl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~ 315 (1165)
++.+..++...+..+.. ++...++++||||+.+.. ..+...+............ ............
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----- 222 (395)
T 3pey_A 156 NMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAV---RQYAKKIVPNANTLELQTN-----EVNVDAIKQLYM----- 222 (395)
T ss_dssp HHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHH---HHHHHHHSCSCEEECCCGG-----GCSCTTEEEEEE-----
T ss_pred hhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHH---HHHHHHhCCCCeEEEcccc-----ccccccccEEEE-----
Confidence 99875577777777765 456689999999996542 2222211100000000000 000000000000
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhh
Q 037446 316 AVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395 (1165)
Q Consensus 316 ~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~ 395 (1165)
T Consensus 223 -------------------------------------------------------------------------------- 222 (395)
T 3pey_A 223 -------------------------------------------------------------------------------- 222 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHH
Q 037446 396 HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475 (1165)
Q Consensus 396 ~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~a 475 (1165)
.......|...+.+++. ...+.++||||+++..+
T Consensus 223 ----------------------------------------~~~~~~~~~~~l~~~~~------~~~~~~~lvf~~~~~~~ 256 (395)
T 3pey_A 223 ----------------------------------------DCKNEADKFDVLTELYG------LMTIGSSIIFVATKKTA 256 (395)
T ss_dssp ----------------------------------------ECSSHHHHHHHHHHHHT------TTTSSEEEEECSCHHHH
T ss_pred ----------------------------------------EcCchHHHHHHHHHHHH------hccCCCEEEEeCCHHHH
Confidence 00001123333433332 22468999999999999
Q ss_pred HHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCC----
Q 037446 476 RDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV---- 551 (1165)
Q Consensus 476 e~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~---- 551 (1165)
+.+++.|+..+ +.+..+|| ++++.+|.+++++|++|+.+|||||+++++|||+|++++||++|+|+
T Consensus 257 ~~l~~~l~~~~--~~~~~~~~--------~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~ 326 (395)
T 3pey_A 257 NVLYGKLKSEG--HEVSILHG--------DLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANG 326 (395)
T ss_dssp HHHHHHHHHTT--CCCEEECT--------TSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTS
T ss_pred HHHHHHHHhcC--CcEEEeCC--------CCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcC
Confidence 99999999988 77776766 89999999999999999999999999999999999999999999999
Q ss_pred --CHHHHHHHHhhcCCCCC-CccceecCh-hHHHHHHHHHHHHh
Q 037446 552 --SPLRMIQRMGRTGRKHD-GRIPHIFKP-EVQFVELSIEQYVS 591 (1165)
Q Consensus 552 --S~~~yiQriGRagR~Gq-Gkiv~v~~~-d~~~~~~~Ie~~l~ 591 (1165)
++..|+||+||+||.|+ |.+++++.+ +...+...+++++.
T Consensus 327 ~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 327 QADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp SBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 99999999999999996 776666654 55556667777664
No 15
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.3e-40 Score=387.39 Aligned_cols=356 Identities=18% Similarity=0.197 Sum_probs=264.0
Q ss_pred CCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc---CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCC
Q 037446 80 NEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF---SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDG 154 (1165)
Q Consensus 80 ~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~---rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~ 154 (1165)
....+|++ ++++.+++.+...||.. |+++|.+++..++. +++|+.+|||+|||++|++++++.+... ..+
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~-----~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~ 96 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNR-----PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP 96 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCS-----CCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSC
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCC-----CCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCC
Confidence 34558999 99999999999999975 56677888888875 7899999999999999999999887543 344
Q ss_pred eEEEEecChhHHHHHHHHHHHHhCC-CCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHc-CccCCCCccEEEE
Q 037446 155 KIVFAAPSRPLVMQQIEACHNIVGI-PQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS-GTCLMKYLVCLVI 232 (1165)
Q Consensus 155 rvLILvPtr~La~Q~~~e~~kl~g~-~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~-~~~~l~~~~lVVI 232 (1165)
++|||+|+++|+.|+.+.+.++.+. +...+....|+...... .....+|+|+||++|.+.+.. ..+.+.++++|||
T Consensus 97 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 97 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG--QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT--CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh--hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEE
Confidence 8999999999999999999998654 34556666666543221 134679999999999998865 5666789999999
Q ss_pred cccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEec
Q 037446 233 DEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVE 311 (1165)
Q Consensus 233 DEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~ 311 (1165)
||||++.+..++...+..+.. +....++++||||+.+... .+.... +..+. .+.+
T Consensus 175 DEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~---~~~~~~------------------~~~~~--~~~~- 230 (412)
T 3fht_A 175 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVW---KFAQKV------------------VPDPN--VIKL- 230 (412)
T ss_dssp ETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHH---HHHHHH------------------SSSCE--EECC-
T ss_pred eCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHH---HHHHHh------------------cCCCe--EEee-
Confidence 999999875567666666665 4667899999999975432 222111 11100 0000
Q ss_pred cchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 037446 312 MGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRR 391 (1165)
Q Consensus 312 ~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ 391 (1165)
.... ... ..+.
T Consensus 231 -~~~~-----------------------------~~~-----------------~~~~---------------------- 241 (412)
T 3fht_A 231 -KREE-----------------------------ETL-----------------DTIK---------------------- 241 (412)
T ss_dssp -CGGG-----------------------------SSC-----------------TTEE----------------------
T ss_pred -cccc-----------------------------ccc-----------------cCce----------------------
Confidence 0000 000 0000
Q ss_pred HHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCc
Q 037446 392 LLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNF 471 (1165)
Q Consensus 392 ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~s 471 (1165)
. ..........|+..+.+++... .+.++||||++
T Consensus 242 ------------------------~----------------~~~~~~~~~~~~~~l~~~~~~~------~~~~~lvf~~~ 275 (412)
T 3fht_A 242 ------------------------Q----------------YYVLCSSRDEKFQALCNLYGAI------TIAQAMIFCHT 275 (412)
T ss_dssp ------------------------E----------------EEEECSSHHHHHHHHHHHHHHH------SSSEEEEECSS
T ss_pred ------------------------E----------------EEEEcCChHHHHHHHHHHHhhc------CCCCEEEEeCC
Confidence 0 0000001123455555555443 36799999999
Q ss_pred hHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCC
Q 037446 472 RGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV 551 (1165)
Q Consensus 472 r~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~ 551 (1165)
+..++.++..|...+ +.+..+|| +|++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|+
T Consensus 276 ~~~~~~l~~~L~~~~--~~~~~~~~--------~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~ 345 (412)
T 3fht_A 276 RKTASWLAAELSKEG--HQVALLSG--------EMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPV 345 (412)
T ss_dssp HHHHHHHHHHHHHTT--CCCEEECT--------TSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCB
T ss_pred HHHHHHHHHHHHhCC--CeEEEecC--------CCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCC
Confidence 999999999999987 77766666 89999999999999999999999999999999999999999999995
Q ss_pred ------CHHHHHHHHhhcCCCCC-CccceecChh-HHHHHHHHHHHHh
Q 037446 552 ------SPLRMIQRMGRTGRKHD-GRIPHIFKPE-VQFVELSIEQYVS 591 (1165)
Q Consensus 552 ------S~~~yiQriGRagR~Gq-Gkiv~v~~~d-~~~~~~~Ie~~l~ 591 (1165)
+...|+||+||+||.|+ |.+++++.+. .......+++.+.
T Consensus 346 ~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 393 (412)
T 3fht_A 346 DKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 393 (412)
T ss_dssp CSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHT
T ss_pred CCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHC
Confidence 66899999999999996 7777777654 3555667777664
No 16
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=9.4e-41 Score=420.45 Aligned_cols=453 Identities=21% Similarity=0.287 Sum_probs=275.0
Q ss_pred CCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCC----CeEEEEecChhHHHHH-HHHHHHHhCC
Q 037446 106 VNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPD----GKIVFAAPSRPLVMQQ-IEACHNIVGI 179 (1165)
Q Consensus 106 t~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~----~rvLILvPtr~La~Q~-~~e~~kl~g~ 179 (1165)
..++|++||.+++.+++. +++||+++||+|||++|++|+++.+...+. +++|||+|+++|+.|| .++++++++.
T Consensus 4 ~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp ---CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 457999999999999987 799999999999999999999988765433 7899999999999999 9999998875
Q ss_pred CCceEEEEeCCCChHH-HHhhcCCccEEEEcHHHHHHHH------HcCccCCCCccEEEEcccccccCccchHHHHHHHH
Q 037446 180 PQEWTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDI------QSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM 252 (1165)
Q Consensus 180 ~~~~v~~l~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l------~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~ 252 (1165)
...+..++|+..... +..++...+|+|+||++|.+.+ ....+.+.++++|||||||++.....|...+..++
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 366888888876432 2344567999999999999988 44556788999999999999977555655555443
Q ss_pred cC--------------CCCCeEEEEccCCCCC--------hHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEe
Q 037446 253 SV--------------PVQLRILALTATPGSK--------QQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEV 310 (1165)
Q Consensus 253 ~~--------------~~~~riL~LSATP~~~--------~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v 310 (1165)
.. ....++|+|||||... ...+..++..+....+.........+..++..+......+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 21 1456899999999763 3456666666666555555555677788887776655555
Q ss_pred ccch--hHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhh-hhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHH
Q 037446 311 EMGQ--EAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDL-LNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLY 387 (1165)
Q Consensus 311 ~~~~--~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l-~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~ 387 (1165)
.... ........+...+..++ . +....++........ ........... ..........+....
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~---~---~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~ 308 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYC---Q---MSPMSDFGTQPYEQWAIQMEKKAAKEG--------NRKERVCAEHLRKYN 308 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHH---T---CCCCSCSSSHHHHHHHHHHHHHHHHHT--------CTTTHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHh---c---cCcchhccchHHHHHHHHHHHHHHHhh--------hhhhHHHHHHHHHHH
Confidence 4321 11111111211111110 0 000001100000000 00000000000 000000001111111
Q ss_pred HHHHHHhhCCchHHHHHHHHHHhhccch-------------hcccchhh----HHHHHHHHHhhhcc-CCCChHHHHHHH
Q 037446 388 HIRRLLSSHGIRPAYEMLEEKLKQGSFA-------------RFMSKNED----IRKVKLLMQQSISH-GAQSPKLSKMLE 449 (1165)
Q Consensus 388 ~i~~ll~~~g~~~~~~~L~~~~~~~~~~-------------~ll~~~~~----~~~v~~~l~~~~~~-~~~s~Kl~~Lle 449 (1165)
....+....+.......+...+...... .+...... +......+...... ...++|+..|.+
T Consensus 309 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ 388 (699)
T 4gl2_A 309 EALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRN 388 (699)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 1111111122222222222111110000 00000000 11111112222222 225788888999
Q ss_pred HHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhc------CCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCc
Q 037446 450 VLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI------GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGY 523 (1165)
Q Consensus 450 lL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~------g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~ 523 (1165)
+|.+++. ....+.++||||+++..++.|++.|... | +++..+||...+..+++|++.+|.+++++|++|++
T Consensus 389 ~L~~~~~-~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g--~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~ 465 (699)
T 4gl2_A 389 TIMEQYT-RTEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKI 465 (699)
T ss_dssp HHHHHHH-HSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---
T ss_pred HHHHHHh-cCCCCCcEEEEECcHHHHHHHHHHHHhCccccccC--cceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCC
Confidence 9988765 2223789999999999999999999987 6 88889998766555666999999999999999999
Q ss_pred eEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCccceecCh
Q 037446 524 NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKP 577 (1165)
Q Consensus 524 ~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv~v~~~ 577 (1165)
+|||||+++++|||+|+|++||+||+|||+..|+||+|||||.| +.+++++..
T Consensus 466 ~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g-~~~~l~~~~ 518 (699)
T 4gl2_A 466 NLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE-STYVLVAHS 518 (699)
T ss_dssp CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS-CEEEEEEES
T ss_pred cEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC-ceEEEEEeC
Confidence 99999999999999999999999999999999999999987666 555555543
No 17
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8.1e-40 Score=403.58 Aligned_cols=357 Identities=17% Similarity=0.209 Sum_probs=258.3
Q ss_pred cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhh---cCCeEEEcCCCchHHHHHHHHHHHHHHhCC-----CCeEEEE
Q 037446 88 SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTAL---FSNTLVALPTGLGKTLIAAVVIYNFFRWFP-----DGKIVFA 159 (1165)
Q Consensus 88 ~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll---~rnvIl~a~TGsGKTL~a~lpil~~L~~~~-----~~rvLIL 159 (1165)
.|++.+++++...||.. |+++|.+++..++ ++++|+.+|||+|||++|++|+++.+.... ..++|||
T Consensus 27 ~l~~~l~~~l~~~g~~~-----~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl 101 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPG-----LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIV 101 (579)
T ss_dssp SSCHHHHHHHHTTTCSS-----CCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEE
T ss_pred CCCHHHHHHHHHCCCCC-----CCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEE
Confidence 49999999999999975 5677889998887 378999999999999999999998886543 3489999
Q ss_pred ecChhHHHHHHHHHHHHh----CCCCceEEEEeCCCChHHH-Hhh-cCCccEEEEcHHHHHHHHHcC-ccCCCCccEEEE
Q 037446 160 APSRPLVMQQIEACHNIV----GIPQEWTIDMTGQISPTKR-ASF-WKTKRVFFVTPQVLEKDIQSG-TCLMKYLVCLVI 232 (1165)
Q Consensus 160 vPtr~La~Q~~~e~~kl~----g~~~~~v~~l~G~~~~~~~-~~l-~~~~dIlVaTpq~L~~~l~~~-~~~l~~~~lVVI 232 (1165)
+||++|+.||.+++.+++ +.....+..+.|+...... ..+ ..+++|+|+||++|...+... ...+..+++|||
T Consensus 102 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lVi 181 (579)
T 3sqw_A 102 APTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 181 (579)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEE
Confidence 999999999999999976 4455667777887765432 222 236899999999999988754 446788999999
Q ss_pred cccccccCccchHHHHHHHHc--------CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCc
Q 037446 233 DEAHRATGNYAYCTAIRELMS--------VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRK 304 (1165)
Q Consensus 233 DEAHrl~~~~~~~~~l~~L~~--------~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~ 304 (1165)
||||++.++ +|...+..+.. .....++++||||++.... .++. .++..+.
T Consensus 182 DEah~l~~~-gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~---~~~~------------------~~l~~~~ 239 (579)
T 3sqw_A 182 DEADRLLEI-GFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQ---KLAN------------------NIMNKKE 239 (579)
T ss_dssp ETHHHHTST-TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHH---HHTT------------------TTCCSSE
T ss_pred EChHHhhcC-CCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHH---HHHH------------------HHcCCCc
Confidence 999999985 67766666543 2236789999999976432 2221 1111111
Q ss_pred eEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHH
Q 037446 305 IELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI 384 (1165)
Q Consensus 305 ~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~ 384 (1165)
...+........ .... .+...
T Consensus 240 ~~~~~~~~~~~~-------------------------------~~~~---------------~i~~~------------- 260 (579)
T 3sqw_A 240 CLFLDTVDKNEP-------------------------------EAHE---------------RIDQS------------- 260 (579)
T ss_dssp EEEEESSCSSSC-------------------------------SSCT---------------TEEEE-------------
T ss_pred eEEEeecCcccc-------------------------------cccc---------------ccceE-------------
Confidence 111100000000 0000 00000
Q ss_pred HHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCe
Q 037446 385 TLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSR 464 (1165)
Q Consensus 385 ~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~k 464 (1165)
. ........+...+++.+.+.+. ....+.+
T Consensus 261 -------------------------------~------------------~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 290 (579)
T 3sqw_A 261 -------------------------------V------------------VISEKFANSIFAAVEHIKKQIK-ERDSNYK 290 (579)
T ss_dssp -------------------------------E------------------EEESSTTHHHHHHHHHHHHHHH-HTTTCCE
T ss_pred -------------------------------E------------------EEecchhhhHHHHHHHHHHHHh-hcCCCCc
Confidence 0 0000001111222222222222 1235789
Q ss_pred EEEEeCchHHHHHHHHHHHhc---CCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCC
Q 037446 465 VIIFSNFRGSVRDIMNALATI---GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541 (1165)
Q Consensus 465 vIVF~~sr~~ae~L~~~L~~~---g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~v 541 (1165)
+||||+++..++.++..|... + +.+..+|| +|++.+|..++++|++|+.+|||||+++++|||+|++
T Consensus 291 ~iVF~~t~~~~~~l~~~L~~~~~~~--~~v~~~hg--------~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v 360 (579)
T 3sqw_A 291 AIIFAPTVKFTSFLCSILKNEFKKD--LPILEFHG--------KITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNV 360 (579)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTT--SCEEEEST--------TSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTC
T ss_pred EEEECCcHHHHHHHHHHHHHhhcCC--CcEEEecC--------CCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccC
Confidence 999999999999999999876 4 66666665 8999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHH
Q 037446 542 DLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 542 d~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
++||++|+|+++..|+||+||+||.|+ |.+++++.+++......+++..
T Consensus 361 ~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 361 HEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp CEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 999999999999999999999999995 8888888877766666676654
No 18
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.1e-41 Score=395.23 Aligned_cols=354 Identities=18% Similarity=0.228 Sum_probs=157.2
Q ss_pred CCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeEEE
Q 037446 82 GSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIVF 158 (1165)
Q Consensus 82 ~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rvLI 158 (1165)
..+|++ +|++.+++.+...||.. |++||.+++..+.. +++++.+|||+|||++|++++++.+... ..+++||
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~-----~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~li 94 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEE-----PSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALM 94 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCS-----CCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEE
T ss_pred cCChhhcCCCHHHHHHHHHcCCCC-----CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEE
Confidence 357999 99999999999998874 67788888888876 8999999999999999999999877543 4568999
Q ss_pred EecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccc
Q 037446 159 AAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRA 238 (1165)
Q Consensus 159 LvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl 238 (1165)
|+|+++|+.||.+++.+++......+..+.|+.........+.+++|+|+||++|...+....+.+.++++||+||||++
T Consensus 95 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~ 174 (394)
T 1fuu_A 95 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 174 (394)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH
T ss_pred EcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHh
Confidence 99999999999999999877666778888998887665554557899999999999999887788889999999999999
Q ss_pred cCccchHHHHHHHH-cCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHH
Q 037446 239 TGNYAYCTAIRELM-SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAV 317 (1165)
Q Consensus 239 ~~~~~~~~~l~~L~-~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~ 317 (1165)
.+. ++...+..+. .++...++++|||||++.. ..++.. ++..+. .+.+.......
T Consensus 175 ~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~---~~~~~~------------------~~~~~~--~~~~~~~~~~~ 230 (394)
T 1fuu_A 175 LSS-GFKEQIYQIFTLLPPTTQVVLLSATMPNDV---LEVTTK------------------FMRNPV--RILVKKDELTL 230 (394)
T ss_dssp HHT-TCHHHHHHHHHHSCTTCEEEEECSSCCHHH---HHHHHH------------------HCCSCE--EEEECC-----
T ss_pred hCC-CcHHHHHHHHHhCCCCceEEEEEEecCHHH---HHHHHH------------------hcCCCe--EEEecCccccC
Confidence 775 5666555555 3566789999999997532 222211 111110 01110000000
Q ss_pred HHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCC
Q 037446 318 EINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397 (1165)
Q Consensus 318 ~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g 397 (1165)
. +
T Consensus 231 ---~---------------------------------------------------------------------------~ 232 (394)
T 1fuu_A 231 ---E---------------------------------------------------------------------------G 232 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---C---------------------------------------------------------------------------C
Confidence 0 0
Q ss_pred chHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHH
Q 037446 398 IRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRD 477 (1165)
Q Consensus 398 ~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~ 477 (1165)
....+.. ......|...+.+++... ...++||||++++.++.
T Consensus 233 ~~~~~~~--------------------------------~~~~~~~~~~l~~~~~~~------~~~~~lVf~~~~~~~~~ 274 (394)
T 1fuu_A 233 IKQFYVN--------------------------------VEEEEYKYECLTDLYDSI------SVTQAVIFCNTRRKVEE 274 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEE--------------------------------cCchhhHHHHHHHHHhcC------CCCcEEEEECCHHHHHH
Confidence 0000000 000011333344444321 35799999999999999
Q ss_pred HHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHH
Q 037446 478 IMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMI 557 (1165)
Q Consensus 478 L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yi 557 (1165)
+++.|+..+ +.+..+|| ++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|+++..|+
T Consensus 275 l~~~L~~~~--~~~~~~~~--------~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~ 344 (394)
T 1fuu_A 275 LTTKLRNDK--FTVSAIYS--------DLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 344 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcC--CeEEEeeC--------CCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHH
Confidence 999998877 66655655 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCC-CccceecChhHHHHHHHHHHHH
Q 037446 558 QRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 558 QriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
||+||+||.|+ |.++.++.+++......+++++
T Consensus 345 Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~ 378 (394)
T 1fuu_A 345 HRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 378 (394)
T ss_dssp ----------------------------------
T ss_pred HHcCcccCCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 99999999995 8888888776654444555543
No 19
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.8e-39 Score=398.74 Aligned_cols=357 Identities=18% Similarity=0.208 Sum_probs=256.4
Q ss_pred cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhh---cCCeEEEcCCCchHHHHHHHHHHHHHHhCC-----CCeEEEE
Q 037446 88 SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTAL---FSNTLVALPTGLGKTLIAAVVIYNFFRWFP-----DGKIVFA 159 (1165)
Q Consensus 88 ~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll---~rnvIl~a~TGsGKTL~a~lpil~~L~~~~-----~~rvLIL 159 (1165)
.|++.+++++...||.. |+++|.+++..++ ++++|+.+|||+|||++|++|+++.+.... ..++|||
T Consensus 78 ~l~~~l~~~l~~~g~~~-----~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil 152 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPG-----LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIV 152 (563)
T ss_dssp SSCHHHHHHHHTTCCSS-----CCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEE
T ss_pred CCCHHHHHHHHHCCCCC-----CCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEE
Confidence 39999999999999875 5677888988887 368999999999999999999999886543 3489999
Q ss_pred ecChhHHHHHHHHHHHHh----CCCCceEEEEeCCCChHHH-Hhh-cCCccEEEEcHHHHHHHHHcC-ccCCCCccEEEE
Q 037446 160 APSRPLVMQQIEACHNIV----GIPQEWTIDMTGQISPTKR-ASF-WKTKRVFFVTPQVLEKDIQSG-TCLMKYLVCLVI 232 (1165)
Q Consensus 160 vPtr~La~Q~~~e~~kl~----g~~~~~v~~l~G~~~~~~~-~~l-~~~~dIlVaTpq~L~~~l~~~-~~~l~~~~lVVI 232 (1165)
+||++|+.|+.+++++++ +.....+..+.|+...... ..+ ..+++|+|+||++|.+.+... ...+..+++|||
T Consensus 153 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 232 (563)
T 3i5x_A 153 APTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232 (563)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEE
Confidence 999999999999999874 3344557777887765432 222 347899999999999888754 345788999999
Q ss_pred cccccccCccchHHHHHHHHc--------CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCc
Q 037446 233 DEAHRATGNYAYCTAIRELMS--------VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRK 304 (1165)
Q Consensus 233 DEAHrl~~~~~~~~~l~~L~~--------~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~ 304 (1165)
||||++.++ +|...+..+.. .....++++||||+++... .++.. ++..+.
T Consensus 233 DEah~l~~~-~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~---~~~~~------------------~~~~~~ 290 (563)
T 3i5x_A 233 DEADRLLEI-GFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQ---KLANN------------------IMNKKE 290 (563)
T ss_dssp ETHHHHTST-TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHH---HHTTT------------------TCCSSE
T ss_pred eCHHHHhcc-chHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHH---HHHHH------------------hcCCCc
Confidence 999999985 56666665542 2346789999999976532 22211 111111
Q ss_pred eEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHH
Q 037446 305 IELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALI 384 (1165)
Q Consensus 305 ~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~ 384 (1165)
...+....... . ..... +...
T Consensus 291 ~~~~~~~~~~~-----------------------------~--~~~~~---------------~~~~------------- 311 (563)
T 3i5x_A 291 CLFLDTVDKNE-----------------------------P--EAHER---------------IDQS------------- 311 (563)
T ss_dssp EEEEESSCSSS-----------------------------C--SSCTT---------------EEEE-------------
T ss_pred eEEEeccCCCC-----------------------------c--ccccc---------------CceE-------------
Confidence 11110000000 0 00000 0000
Q ss_pred HHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCe
Q 037446 385 TLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSR 464 (1165)
Q Consensus 385 ~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~k 464 (1165)
. ........++..+++.+...+. ....+.+
T Consensus 312 -------------------------------~------------------~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 341 (563)
T 3i5x_A 312 -------------------------------V------------------VISEKFANSIFAAVEHIKKQIK-ERDSNYK 341 (563)
T ss_dssp -------------------------------E------------------EEESSTTHHHHHHHHHHHHHHH-HTTTCCE
T ss_pred -------------------------------E------------------EECchhHhhHHHHHHHHHHHHh-hcCCCCc
Confidence 0 0000001122222222222222 2235789
Q ss_pred EEEEeCchHHHHHHHHHHHhc---CCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCC
Q 037446 465 VIIFSNFRGSVRDIMNALATI---GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541 (1165)
Q Consensus 465 vIVF~~sr~~ae~L~~~L~~~---g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~v 541 (1165)
+||||+++..++.++..|... + +.+..+|| +|++.+|..+++.|++|+.+|||||+++++|||+|++
T Consensus 342 ~iVF~~s~~~~~~l~~~L~~~~~~~--~~v~~~h~--------~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v 411 (563)
T 3i5x_A 342 AIIFAPTVKFTSFLCSILKNEFKKD--LPILEFHG--------KITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNV 411 (563)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTTT--SCEEEEST--------TSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTC
T ss_pred EEEEcCcHHHHHHHHHHHHHhccCC--ceEEEecC--------CCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccC
Confidence 999999999999999999876 4 66666665 8999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHH
Q 037446 542 DLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 542 d~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
++||+||+|+++..|+||+||+||.|+ |.+++++.+++......+++..
T Consensus 412 ~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 412 HEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp CEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred CEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 999999999999999999999999994 8888888777666655666554
No 20
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.8e-39 Score=367.69 Aligned_cols=331 Identities=22% Similarity=0.282 Sum_probs=246.2
Q ss_pred CCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHH
Q 037446 89 LCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167 (1165)
Q Consensus 89 L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~ 167 (1165)
|++.+.+++...||.. |++||.+++..+.. +++++.+|||+|||++|++++++. +.++|||+|+++|+.
T Consensus 1 l~~~i~~~l~~~g~~~-----l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----~~~~liv~P~~~L~~ 70 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKN-----FTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----GMKSLVVTPTRELTR 70 (337)
T ss_dssp CCHHHHHHHHHTTCCS-----CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEECSSHHHHH
T ss_pred CCHHHHHHHHHcCCCC-----CCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----cCCEEEEeCCHHHHH
Confidence 5788999999999974 67888999998876 899999999999999999998774 678999999999999
Q ss_pred HHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHH
Q 037446 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTA 247 (1165)
Q Consensus 168 Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~ 247 (1165)
||.+.+.++.......+..+.|+.....+...+..++|+|+||++|.+.+....+.+.++++||+||||++.+. ++...
T Consensus 71 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~-~~~~~ 149 (337)
T 2z0m_A 71 QVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEM-GFIDD 149 (337)
T ss_dssp HHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHT-TCHHH
T ss_pred HHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcc-ccHHH
Confidence 99999999876666778888998887665555667999999999999998887777889999999999999875 56666
Q ss_pred HHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHH
Q 037446 248 IRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEV 326 (1165)
Q Consensus 248 l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~ 326 (1165)
+..++. .....++++||||++... ...+.. ++.... .+.....
T Consensus 150 ~~~~~~~~~~~~~~~~~SAT~~~~~---~~~~~~------------------~~~~~~--~~~~~~~------------- 193 (337)
T 2z0m_A 150 IKIILAQTSNRKITGLFSATIPEEI---RKVVKD------------------FITNYE--EIEACIG------------- 193 (337)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHH---HHHHHH------------------HSCSCE--EEECSGG-------------
T ss_pred HHHHHhhCCcccEEEEEeCcCCHHH---HHHHHH------------------hcCCce--eeecccc-------------
Confidence 666554 556678889999997542 222211 111100 0000000
Q ss_pred HhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHH
Q 037446 327 IRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLE 406 (1165)
Q Consensus 327 i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~ 406 (1165)
.. .....+..
T Consensus 194 -----------------------~~---~~~~~~~~-------------------------------------------- 203 (337)
T 2z0m_A 194 -----------------------LA---NVEHKFVH-------------------------------------------- 203 (337)
T ss_dssp -----------------------GG---GEEEEEEE--------------------------------------------
T ss_pred -----------------------cC---CceEEEEE--------------------------------------------
Confidence 00 00000000
Q ss_pred HHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcC
Q 037446 407 EKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG 486 (1165)
Q Consensus 407 ~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g 486 (1165)
. ..+....++.+. ...+.++||||++++.++.+++.|.
T Consensus 204 -------------------------------~--~~~~~~~~~~~~------~~~~~~~lvf~~~~~~~~~l~~~l~--- 241 (337)
T 2z0m_A 204 -------------------------------V--KDDWRSKVQALR------ENKDKGVIVFVRTRNRVAKLVRLFD--- 241 (337)
T ss_dssp -------------------------------C--SSSSHHHHHHHH------TCCCSSEEEECSCHHHHHHHHTTCT---
T ss_pred -------------------------------e--ChHHHHHHHHHH------hCCCCcEEEEEcCHHHHHHHHHHhh---
Confidence 0 000001112221 1257899999999999999988775
Q ss_pred CCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCC
Q 037446 487 DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRK 566 (1165)
Q Consensus 487 ~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~ 566 (1165)
.+..+| ++++..+|.+++++|++|+.+|||||+++++|+|+|++++||++++|+|+..|+||+||+||.
T Consensus 242 ---~~~~~~--------~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~ 310 (337)
T 2z0m_A 242 ---NAIELR--------GDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRM 310 (337)
T ss_dssp ---TEEEEC--------TTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGG
T ss_pred ---hhhhhc--------CCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccC
Confidence 233444 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CccceecChhHHHHHHHHHHHH
Q 037446 567 HD-GRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 567 Gq-Gkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
|+ |.++.++. .+......+++.+
T Consensus 311 g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 311 GRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp GCCEEEEEEES-SCHHHHHHHC---
T ss_pred CCCceEEEEEe-CcHHHHHHHHHHh
Confidence 95 66666666 4443444555444
No 21
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.5e-40 Score=397.31 Aligned_cols=354 Identities=18% Similarity=0.210 Sum_probs=148.9
Q ss_pred CCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc---CCeEEEcCCCchHHHHHHHHHHHHHHhCC-CCe
Q 037446 81 EGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF---SNTLVALPTGLGKTLIAAVVIYNFFRWFP-DGK 155 (1165)
Q Consensus 81 ~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~---rnvIl~a~TGsGKTL~a~lpil~~L~~~~-~~r 155 (1165)
...+|++ +|++.+++.+...||..| +++|.+++..++. +++|++++||+|||++|++|+++.+.... .++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p-----~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~ 164 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRP-----SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ 164 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSC-----CHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCC-----CHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCc
Confidence 3468988 999999999999999865 5566778887775 78999999999999999999998775433 348
Q ss_pred EEEEecChhHHHHHHHHHHHHhCC-CCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHc-CccCCCCccEEEEc
Q 037446 156 IVFAAPSRPLVMQQIEACHNIVGI-PQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS-GTCLMKYLVCLVID 233 (1165)
Q Consensus 156 vLILvPtr~La~Q~~~e~~kl~g~-~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~-~~~~l~~~~lVVID 233 (1165)
+|||+||++|+.|+.+.+.++... +...+....|+...... .....+|+|+||++|.+.+.. ..+.+.++++||||
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViD 242 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG--QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT--CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEEC
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc--ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEE
Confidence 999999999999999999987654 34455556665443221 124579999999999998865 55677899999999
Q ss_pred ccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEecc
Q 037446 234 EAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEM 312 (1165)
Q Consensus 234 EAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~ 312 (1165)
|||++....++...+..+.. ++...++++||||+..... .+... ++.. ...+.+..
T Consensus 243 Eah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~---~~~~~------------------~~~~--~~~i~~~~ 299 (479)
T 3fmp_B 243 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVW---KFAQK------------------VVPD--PNVIKLKR 299 (479)
T ss_dssp CHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHH---HHHHH------------------HSSS--EEEEEEC-
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHH---HHHHH------------------HcCC--CeEEeccc
Confidence 99999875577777666665 4667899999999975432 22211 1111 11111111
Q ss_pred chhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 037446 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392 (1165)
Q Consensus 313 ~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~l 392 (1165)
..... ..+
T Consensus 300 ~~~~~---~~~--------------------------------------------------------------------- 307 (479)
T 3fmp_B 300 EEETL---DTI--------------------------------------------------------------------- 307 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCc---CCc---------------------------------------------------------------------
Confidence 00000 000
Q ss_pred HhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCch
Q 037446 393 LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFR 472 (1165)
Q Consensus 393 l~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr 472 (1165)
...+ ........|...|.+++... ...++||||+++
T Consensus 308 ------~~~~--------------------------------~~~~~~~~~~~~l~~~~~~~------~~~~~lvF~~s~ 343 (479)
T 3fmp_B 308 ------KQYY--------------------------------VLCSSRDEKFQALCNLYGAI------TIAQAMIFCHTR 343 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------eEEE--------------------------------EEeCCHHHHHHHHHHHHhhc------cCCceEEEeCcH
Confidence 0000 00000123444455444322 357999999999
Q ss_pred HHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCC-
Q 037446 473 GSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV- 551 (1165)
Q Consensus 473 ~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~- 551 (1165)
..++.++..|...+ +.+..+|| ++++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|+
T Consensus 344 ~~~~~l~~~L~~~~--~~v~~lh~--------~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~ 413 (479)
T 3fmp_B 344 KTASWLAAELSKEG--HQVALLSG--------EMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD 413 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCC--ccEEEecC--------CCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCC
Confidence 99999999998877 66655555 89999999999999999999999999999999999999999999995
Q ss_pred -----CHHHHHHHHhhcCCCCC-CccceecChhH-HHHHHHHHHHH
Q 037446 552 -----SPLRMIQRMGRTGRKHD-GRIPHIFKPEV-QFVELSIEQYV 590 (1165)
Q Consensus 552 -----S~~~yiQriGRagR~Gq-Gkiv~v~~~d~-~~~~~~Ie~~l 590 (1165)
+...|+||+||+||.|+ |.+++++.+.. ..+...|++++
T Consensus 414 ~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~ 459 (479)
T 3fmp_B 414 KDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHF 459 (479)
T ss_dssp ----------------------------------------------
T ss_pred CccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHh
Confidence 56899999999999995 88888876543 43444555444
No 22
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.9e-38 Score=384.53 Aligned_cols=374 Identities=20% Similarity=0.235 Sum_probs=263.3
Q ss_pred CCCCc-cCCHHHHHHHHH-CCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEE
Q 037446 83 SSFDE-SLCHVQIDAEAA-KTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~-~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLIL 159 (1165)
..|++ +|++.+.+.+.. .||.. +|++|.+++..++. +++++.+|||+|||++|++|++.. .+++|||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~-----~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----~g~~lvi 71 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQ-----FRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----NGLTVVV 71 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSS-----CCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----SSEEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----CCCEEEE
Confidence 36888 999999999998 78864 56677888888876 899999999999999999998753 5789999
Q ss_pred ecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhh-----cCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcc
Q 037446 160 APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASF-----WKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDE 234 (1165)
Q Consensus 160 vPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l-----~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDE 234 (1165)
+|+++|+.||.+.+..+ |. .+..+.|+.....+... ....+|+|+||++|........+...++++|||||
T Consensus 72 ~P~~aL~~q~~~~l~~~-gi---~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDE 147 (523)
T 1oyw_A 72 SPLISLMKDQVDQLQAN-GV---AAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDE 147 (523)
T ss_dssp CSCHHHHHHHHHHHHHT-TC---CEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESS
T ss_pred CChHHHHHHHHHHHHHc-CC---cEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeC
Confidence 99999999999999884 43 46677787775543222 24589999999999643322334457899999999
Q ss_pred cccccCc-cchHHHHHH---HHcCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEe
Q 037446 235 AHRATGN-YAYCTAIRE---LMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEV 310 (1165)
Q Consensus 235 AHrl~~~-~~~~~~l~~---L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v 310 (1165)
||++..+ +.|...+.. +....+..++++||||+.... ...++..+.+...... ...+..+......
T Consensus 148 aH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~--~~~i~~~l~~~~~~~~-------~~~~~r~~l~~~v- 217 (523)
T 1oyw_A 148 AHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT--RQDIVRLLGLNDPLIQ-------ISSFDRPNIRYML- 217 (523)
T ss_dssp GGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHH--HHHHHHHHTCCSCEEE-------ECCCCCTTEEEEE-
T ss_pred ccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHH--HHHHHHHhCCCCCeEE-------eCCCCCCceEEEE-
Confidence 9999864 234444333 333345678999999997542 2233332221100000 0000000000000
Q ss_pred ccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 037446 311 EMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIR 390 (1165)
Q Consensus 311 ~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~ 390 (1165)
T Consensus 218 -------------------------------------------------------------------------------- 217 (523)
T 1oyw_A 218 -------------------------------------------------------------------------------- 217 (523)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeC
Q 037446 391 RLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSN 470 (1165)
Q Consensus 391 ~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~ 470 (1165)
.....++..+++++..+ .+.++||||+
T Consensus 218 -----------------------------------------------~~~~~~~~~l~~~l~~~------~~~~~IVf~~ 244 (523)
T 1oyw_A 218 -----------------------------------------------MEKFKPLDQLMRYVQEQ------RGKSGIIYCN 244 (523)
T ss_dssp -----------------------------------------------EECSSHHHHHHHHHHHT------TTCCEEEECS
T ss_pred -----------------------------------------------EeCCCHHHHHHHHHHhc------CCCcEEEEeC
Confidence 00123445566666542 4679999999
Q ss_pred chHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccC
Q 037446 471 FRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN 550 (1165)
Q Consensus 471 sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p 550 (1165)
+++.++.+++.|...| +.+..+|| +|++++|..+++.|++|+.+|||||+++++|||+|++++||++|+|
T Consensus 245 sr~~~e~l~~~L~~~g--~~~~~~h~--------~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p 314 (523)
T 1oyw_A 245 SRAKVEDTAARLQSKG--ISAAAYHA--------GLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIP 314 (523)
T ss_dssp SHHHHHHHHHHHHHTT--CCEEEECT--------TSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCC
T ss_pred CHHHHHHHHHHHHHCC--CCEEEecC--------CCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCC
Confidence 9999999999999988 77766665 8999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHhcCCc-----ccccccccccHHHhhcCHHHHHHHHHHcC
Q 037446 551 VSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVSRGKK-----VKDDHAITTPIFKEKLTAAETDLIAKYFH 624 (1165)
Q Consensus 551 ~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~~~~~-----l~~~~~~~~~~f~~~l~~~e~~~l~~~f~ 624 (1165)
+|+..|+||+||+||.|+ |.+++++.+++... ++.++..... ...........|. ....+.+..+..||+
T Consensus 315 ~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~---~~~~~~~~~~~~~~~~~~~~l~~m~~~~-~~~~crr~~l~~~f~ 390 (523)
T 1oyw_A 315 RNIESYYQETGRAGRDGLPAEAMLFYDPADMAW---LRRCLEEKPQGQLQDIERHKLNAMGAFA-EAQTCRRLVLLNYFG 390 (523)
T ss_dssp SSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHH---HHHHHHTSCCSHHHHHHHHHHHHHHHHH-TCSSCHHHHHHHHTT
T ss_pred CCHHHHHHHhccccCCCCCceEEEEeCHHHHHH---HHHHHhccCcHHHHHHHHHHHHHHHHHH-hccccHhhhhHhhcC
Confidence 999999999999999994 77888887765432 2223322100 0000001111222 335566778889998
Q ss_pred CCC
Q 037446 625 PTS 627 (1165)
Q Consensus 625 ~~k 627 (1165)
+..
T Consensus 391 e~~ 393 (523)
T 1oyw_A 391 EGR 393 (523)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 23
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=6.7e-38 Score=385.76 Aligned_cols=373 Identities=17% Similarity=0.178 Sum_probs=260.6
Q ss_pred cCCHHHHHHHHH-CCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhH
Q 037446 88 SLCHVQIDAEAA-KTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPL 165 (1165)
Q Consensus 88 ~L~~~Ll~~L~~-~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~L 165 (1165)
++++.+.+.|.. .||.. +|++|.+++..++. +++|+.+|||+|||++|++|++. ..+++|||+|+++|
T Consensus 27 ~l~~~l~~~L~~~fg~~~-----~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~-----~~g~~lVisP~~~L 96 (591)
T 2v1x_A 27 PWSGKVKDILQNVFKLEK-----FRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC-----SDGFTLVICPLISL 96 (591)
T ss_dssp TTHHHHHHHHHHTSCCCS-----CCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT-----SSSEEEEECSCHHH
T ss_pred CCCHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH-----cCCcEEEEeCHHHH
Confidence 789999999998 58775 55667888888776 89999999999999999999975 35799999999999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhh-------cCCccEEEEcHHHHHH---HHH--cCccCCCCccEEEEc
Q 037446 166 VMQQIEACHNIVGIPQEWTIDMTGQISPTKRASF-------WKTKRVFFVTPQVLEK---DIQ--SGTCLMKYLVCLVID 233 (1165)
Q Consensus 166 a~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l-------~~~~dIlVaTpq~L~~---~l~--~~~~~l~~~~lVVID 233 (1165)
+.||.+.+.++ |. .+..+.|+.....+... ....+|+|+||++|.. .+. .....+.++++||||
T Consensus 97 ~~q~~~~l~~~-gi---~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViD 172 (591)
T 2v1x_A 97 MEDQLMVLKQL-GI---SATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVD 172 (591)
T ss_dssp HHHHHHHHHHH-TC---CEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHhc-CC---cEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEE
Confidence 99999999986 44 47788888876654322 3468999999998852 221 123456789999999
Q ss_pred ccccccCc-cchHHHHH---HHHcCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEE
Q 037446 234 EAHRATGN-YAYCTAIR---ELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIE 309 (1165)
Q Consensus 234 EAHrl~~~-~~~~~~l~---~L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~ 309 (1165)
|||++..+ +.|...+. .+....+..++++||||+..... ..+...|.+..... +...+..+......
T Consensus 173 EAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~--~~i~~~l~~~~~~~-------~~~~~~r~nl~~~v 243 (591)
T 2v1x_A 173 EVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVL--TDAQKILCIEKCFT-------FTASFNRPNLYYEV 243 (591)
T ss_dssp TGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHH--HHHHHHTTCCSCEE-------EECCCCCTTEEEEE
T ss_pred CcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHH--HHHHHHhCCCCcEE-------EecCCCCcccEEEE
Confidence 99999875 12433332 34444567899999999975421 22222222110000 00000000000000
Q ss_pred eccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHH
Q 037446 310 VEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHI 389 (1165)
Q Consensus 310 v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i 389 (1165)
....
T Consensus 244 ~~~~---------------------------------------------------------------------------- 247 (591)
T 2v1x_A 244 RQKP---------------------------------------------------------------------------- 247 (591)
T ss_dssp EECC----------------------------------------------------------------------------
T ss_pred EeCC----------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEe
Q 037446 390 RRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFS 469 (1165)
Q Consensus 390 ~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~ 469 (1165)
.....++..|++++... ..+.++||||
T Consensus 248 ------------------------------------------------~~~~~~~~~l~~~l~~~-----~~~~~~IVf~ 274 (591)
T 2v1x_A 248 ------------------------------------------------SNTEDFIEDIVKLINGR-----YKGQSGIIYC 274 (591)
T ss_dssp ------------------------------------------------SSHHHHHHHHHHHHTTT-----TTTCEEEEEC
T ss_pred ------------------------------------------------CcHHHHHHHHHHHHHHh-----ccCCCeEEEe
Confidence 00012333444444322 2478999999
Q ss_pred CchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEecc
Q 037446 470 NFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA 549 (1165)
Q Consensus 470 ~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~ 549 (1165)
++++.++.++..|...| +.+..+|| +|++.+|..++++|++|+.+|||||+++++|||+|+|++||+||+
T Consensus 275 ~sr~~~e~la~~L~~~g--~~~~~~h~--------~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~ 344 (591)
T 2v1x_A 275 FSQKDSEQVTVSLQNLG--IHAGAYHA--------NLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSM 344 (591)
T ss_dssp SSHHHHHHHHHHHHHTT--CCEEEECT--------TSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSC
T ss_pred CcHHHHHHHHHHHHHCC--CCEEEecC--------CCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCC
Confidence 99999999999999988 77777766 899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHhcCCcccccccccccHHHhhcCHHHHHHHHHHcCCC
Q 037446 550 NVSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLIAKYFHPT 626 (1165)
Q Consensus 550 p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~~~~~l~~~~~~~~~~f~~~l~~~e~~~l~~~f~~~ 626 (1165)
|+|+..|+||+|||||.|+ |.+++++.+.... .+..++... ............+......+.+..+..||++.
T Consensus 345 p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~---~~~~~~~~~-~~~~~~l~~~~~~~~~~~~Crr~~ll~~f~e~ 418 (591)
T 2v1x_A 345 SKSMENYYQESGRAGRDDMKADCILYYGFGDIF---RISSMVVME-NVGQQKLYEMVSYCQNISKCRRVLMAQHFDEV 418 (591)
T ss_dssp CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHH---HHHHHTTTS-TTHHHHHHHHHHHHTCSSSCHHHHHHHHHTCC
T ss_pred CCCHHHHHHHhccCCcCCCCceEEEEEChHHHH---HHHHHHhhh-hhhHHHHHHHHHHHhcccccHHHHHHHHcCCC
Confidence 9999999999999999994 7788888776542 233333221 11111111111233235567788899999876
No 24
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4.2e-37 Score=372.28 Aligned_cols=414 Identities=17% Similarity=0.161 Sum_probs=265.9
Q ss_pred CCChHHHHHHHHHhh-----cCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCc
Q 037446 108 VPVRDYQFAITKTAL-----FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll-----~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~ 182 (1165)
.+|++||.+++.++. ++++|++++||+|||++++..+..+......+++|||||+ +|+.||.+++++++. ..
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~--~~ 112 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFAP--HL 112 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCT--TS
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCC--Cc
Confidence 579999999999874 3789999999999999998888777666667799999996 899999999999864 45
Q ss_pred eEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEE
Q 037446 183 WTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILA 262 (1165)
Q Consensus 183 ~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~ 262 (1165)
.+..+.|+... .....++|+|+||+++.+... +....|++||+||||++.+.. ....+.+..+. ..+.|+
T Consensus 113 ~v~~~~g~~~~----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~~~l~ 182 (500)
T 1z63_A 113 RFAVFHEDRSK----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYRIA 182 (500)
T ss_dssp CEEECSSSTTS----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEEEE
T ss_pred eEEEEecCchh----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cCcEEE
Confidence 56667776532 223568999999999976543 344579999999999998742 23445555554 346799
Q ss_pred EccCCC-CChHHHHHHHHhhccccccccC---------------------------------CchhhhhhhhccCceEEE
Q 037446 263 LTATPG-SKQQTIQHIIDNLYISTLEYRN---------------------------------ESDQDVSSYVHNRKIELI 308 (1165)
Q Consensus 263 LSATP~-~~~~~l~~Li~~L~is~i~~~~---------------------------------~~~~~i~~y~~~~~~~~i 308 (1165)
|||||. ++..+++.++..+.+..+.-.. ..+..+...+.......+
T Consensus 183 LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v 262 (500)
T 1z63_A 183 LTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNV 262 (500)
T ss_dssp ECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEE
T ss_pred EecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEE
Confidence 999994 5557788877776543221100 000001112222223344
Q ss_pred EeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHH
Q 037446 309 EVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYH 388 (1165)
Q Consensus 309 ~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~ 388 (1165)
.+.+.+.....+..+.......+ ... .........+..+..
T Consensus 263 ~~~l~~~~~~~y~~~~~~~~~~~-------------------------------------~~~--~~~~~~~~~~~~l~~ 303 (500)
T 1z63_A 263 YCNLTPEQAAMYKAEVENLFNNI-------------------------------------DSV--TGIKRKGMILSTLLK 303 (500)
T ss_dssp EECCCHHHHHHHHHHHHHHTTTT-------------------------------------TTC--CTHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHHHHHHHHHH-------------------------------------Hhh--hcccchHHHHHHHHH
Confidence 44555444444333322110000 000 000000000111111
Q ss_pred HHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEE
Q 037446 389 IRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIF 468 (1165)
Q Consensus 389 i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF 468 (1165)
+++++.... .+.........+.|+..+.++|.+... .+.++|||
T Consensus 304 lr~~~~~p~--------------------------------l~~~~~~~~~~s~K~~~l~~~l~~~~~----~~~k~lvF 347 (500)
T 1z63_A 304 LKQIVDHPA--------------------------------LLKGGEQSVRRSGKMIRTMEIIEEALD----EGDKIAIF 347 (500)
T ss_dssp HHHHTTCTH--------------------------------HHHCSCCCSTTCHHHHHHHHHHHHHHT----TTCCEEEE
T ss_pred HHHHhCCHH--------------------------------HhcCccchhhcchhHHHHHHHHHHHHc----cCCcEEEE
Confidence 111111000 000001123457899999999988765 67899999
Q ss_pred eCchHHHHHHHHHHHhc-CCCccceeeecccccccCCCCCHHHHHHHHHHHhcC-Cce-EEEEcccccccccccCCCEEE
Q 037446 469 SNFRGSVRDIMNALATI-GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG-GYN-VIVATSIGEEGLDIMEVDLVI 545 (1165)
Q Consensus 469 ~~sr~~ae~L~~~L~~~-g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g-~~~-VLVATda~~eGLDIp~vd~VI 545 (1165)
|+++..++.+...|... | +.+..++| ++++.+|.+++++|++| ... +|++|+++++|||+|.+++||
T Consensus 348 ~~~~~~~~~l~~~l~~~~~--~~~~~~~g--------~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi 417 (500)
T 1z63_A 348 TQFVDMGKIIRNIIEKELN--TEVPFLYG--------ELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI 417 (500)
T ss_dssp CSCHHHHHHHHHHHHHHHT--CCCCEEET--------TSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE
T ss_pred EehHHHHHHHHHHHHHhhC--CCeEEEEC--------CCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE
Confidence 99999999999999875 7 67777776 78999999999999988 454 799999999999999999999
Q ss_pred EeccCCCHHHHHHHHhhcCCCCCCccceecCh-hHHHHHHHHHHHHhcCCcccccccccccHHHhhcCHHHHHHH
Q 037446 546 CFDANVSPLRMIQRMGRTGRKHDGRIPHIFKP-EVQFVELSIEQYVSRGKKVKDDHAITTPIFKEKLTAAETDLI 619 (1165)
Q Consensus 546 ~~D~p~S~~~yiQriGRagR~GqGkiv~v~~~-d~~~~~~~Ie~~l~~~~~l~~~~~~~~~~f~~~l~~~e~~~l 619 (1165)
++|+|||+..|+||+||++|.||++-+.++.- ....+...+.+.+..+..+..............++.++++.+
T Consensus 418 ~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l 492 (500)
T 1z63_A 418 HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKV 492 (500)
T ss_dssp ESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTTGGGGSSCHHHHHHH
T ss_pred EeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcCcchhccCCHHHHHHH
Confidence 99999999999999999999998774444321 111122344444444444333333222233336777776443
No 25
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.1e-37 Score=364.39 Aligned_cols=313 Identities=17% Similarity=0.209 Sum_probs=226.7
Q ss_pred CChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEE
Q 037446 109 PVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDM 187 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l 187 (1165)
+|+++|.+++..++. +++|+.+|||+|||++|+++++..+ ..++++|||+||++|+.||.+.++++.. ....+..+
T Consensus 21 ~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~ 97 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGF 97 (414)
T ss_dssp CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEEC
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEE
Confidence 577899999998876 7999999999999999999987765 3567899999999999999999999866 66778999
Q ss_pred eCCCChHHH----HhhcCC-ccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCc----------cchHHH-HHHH
Q 037446 188 TGQISPTKR----ASFWKT-KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN----------YAYCTA-IREL 251 (1165)
Q Consensus 188 ~G~~~~~~~----~~l~~~-~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~----------~~~~~~-l~~L 251 (1165)
+|+.....+ ..+..+ ++|+|+||++|.+.+.. +.+.++++|||||||++..+ .+|... +..+
T Consensus 98 ~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i 175 (414)
T 3oiy_A 98 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 175 (414)
T ss_dssp CTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHH
T ss_pred ECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHH
Confidence 999886433 333344 89999999999887763 66778999999999987532 133333 4444
Q ss_pred Hc-CC-----------CCCeEEEEccCC-CCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHH
Q 037446 252 MS-VP-----------VQLRILALTATP-GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVE 318 (1165)
Q Consensus 252 ~~-~~-----------~~~riL~LSATP-~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~ 318 (1165)
+. ++ ...++++||||+ +..... .++..+.. +..... ......+.
T Consensus 176 ~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~--~~~~~~~~--~~~~~~-------~~~~~~i~------------ 232 (414)
T 3oiy_A 176 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRP--LLFRDLLN--FTVGRL-------VSVARNIT------------ 232 (414)
T ss_dssp HHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTT--HHHHHHHS--CCSSCC-------CCCCCSEE------------
T ss_pred HHhcccchhhhhcccCCCceEEEEecCCCcchhHH--HHHHHhhc--cCcCcc-------ccccccch------------
Confidence 33 11 667999999995 332210 11110000 000000 00000000
Q ss_pred HHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCc
Q 037446 319 INNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGI 398 (1165)
Q Consensus 319 i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~ 398 (1165)
T Consensus 233 -------------------------------------------------------------------------------- 232 (414)
T 3oiy_A 233 -------------------------------------------------------------------------------- 232 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHH
Q 037446 399 RPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDI 478 (1165)
Q Consensus 399 ~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L 478 (1165)
+.+ ....|...|.+++... +.++||||+++..++.+
T Consensus 233 ----------------------------------~~~---~~~~~~~~l~~~l~~~-------~~~~lVF~~~~~~~~~l 268 (414)
T 3oiy_A 233 ----------------------------------HVR---ISSRSKEKLVELLEIF-------RDGILIFAQTEEEGKEL 268 (414)
T ss_dssp ----------------------------------EEE---ESSCCHHHHHHHHHHH-------CSSEEEEESSHHHHHHH
T ss_pred ----------------------------------hee---eccCHHHHHHHHHHHc-------CCCEEEEECCHHHHHHH
Confidence 000 0013445566666552 47999999999999999
Q ss_pred HHHHHhcCCCccce-eeecccccccCCCCCHHHHHHHHHHHhcCCceEEEE----cccccccccccC-CCEEEEeccC--
Q 037446 479 MNALATIGDLVKAT-EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVA----TSIGEEGLDIME-VDLVICFDAN-- 550 (1165)
Q Consensus 479 ~~~L~~~g~~i~~~-~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVA----Tda~~eGLDIp~-vd~VI~~D~p-- 550 (1165)
+..|...| +.+. .+|| . +|. +++|++|+++|||| |+++++|||+|+ +++||+||+|
T Consensus 269 ~~~L~~~~--~~~~~~~h~--------~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~ 332 (414)
T 3oiy_A 269 YEYLKRFK--FNVGETWSE--------F----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSG 332 (414)
T ss_dssp HHHHHHTT--CCEEESSSC--------H----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTT
T ss_pred HHHHHHcC--CceehhhcC--------c----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCC
Confidence 99999988 7776 6665 1 343 99999999999999 999999999999 9999999999
Q ss_pred CCHHHHHHHHhhcCCCCC-----CccceecChhHHHHHHHHHHHHh
Q 037446 551 VSPLRMIQRMGRTGRKHD-----GRIPHIFKPEVQFVELSIEQYVS 591 (1165)
Q Consensus 551 ~S~~~yiQriGRagR~Gq-----Gkiv~v~~~d~~~~~~~Ie~~l~ 591 (1165)
+++..|+||+||+||.|+ |.+++++ .+ ......+++++.
T Consensus 333 ~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~-~~-~~~~~~l~~~~~ 376 (414)
T 3oiy_A 333 PDVYTYIQASGRSSRILNGVLVKGVSVIFE-ED-EEIFESLKTRLL 376 (414)
T ss_dssp TCHHHHHHHHGGGCCEETTEECCEEEEEEC-CC-HHHHHHHHHHHH
T ss_pred CCHHHHHHHhCccccCCCCCCcceEEEEEE-cc-HHHHHHHHHHhc
Confidence 999999999999999983 5566666 33 333446776665
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.3e-38 Score=380.16 Aligned_cols=349 Identities=17% Similarity=0.200 Sum_probs=217.5
Q ss_pred CCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc---CCeEEEcCCCchHHHHHHHHHHHHHHhCC-CCeEEEE
Q 037446 85 FDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF---SNTLVALPTGLGKTLIAAVVIYNFFRWFP-DGKIVFA 159 (1165)
Q Consensus 85 Fee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~---rnvIl~a~TGsGKTL~a~lpil~~L~~~~-~~rvLIL 159 (1165)
|.. ++++.+++.+...+|..|+++| .+++..+.. +++|+.++||+|||++|+++++..+.... .+++|||
T Consensus 121 ~~~~~l~~~~~~~l~~~g~~~p~~~Q-----~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl 195 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXXXXXXXXXKIQ-----EKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICL 195 (508)
T ss_dssp ------------------CEECCCTT-----SSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEE
T ss_pred ccccccccccccccccccccCcHHHH-----HHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 444 8899999999999998776665 455555554 78999999999999999999998875543 4589999
Q ss_pred ecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 160 APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 160 vPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
+|+++|+.||.+.+.++++.....+....++... ...+.+++|+|+||++|.+.+....+.+.++++|||||||++.
T Consensus 196 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~ 272 (508)
T 3fho_A 196 APSRELARQIMDVVTEMGKYTEVKTAFGIKDSVP---KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNML 272 (508)
T ss_dssp CSCHHHHHHHHHHHHHHSTTSSCCEEC-------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHT
T ss_pred ECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccc---ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhc
Confidence 9999999999999999876554444444443322 2234578999999999999988888888999999999999998
Q ss_pred CccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHH
Q 037446 240 GNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVE 318 (1165)
Q Consensus 240 ~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~ 318 (1165)
+..++...+..+.. +....++++||||+.+....+...+ . ..+ ..+.+.....
T Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~---~------------------~~~--~~i~~~~~~~--- 326 (508)
T 3fho_A 273 DQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERF---A------------------PNA--NEIRLKTEEL--- 326 (508)
T ss_dssp TC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHH---S------------------TTC--EEECCCCCC----
T ss_pred ccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHh---c------------------CCC--eEEEeccccC---
Confidence 75567777777665 5567899999999976543222211 1 000 0000000000
Q ss_pred HHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCc
Q 037446 319 INNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGI 398 (1165)
Q Consensus 319 i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~ 398 (1165)
.. ..+..
T Consensus 327 ------------------------------~~---------------~~~~~---------------------------- 333 (508)
T 3fho_A 327 ------------------------------SV---------------EGIKQ---------------------------- 333 (508)
T ss_dssp ------------------------------------------------CCCC----------------------------
T ss_pred ------------------------------Cc---------------ccceE----------------------------
Confidence 00 00000
Q ss_pred hHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHH
Q 037446 399 RPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDI 478 (1165)
Q Consensus 399 ~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L 478 (1165)
. .........|...+.+++.. ..+.++||||++++.++.+
T Consensus 334 -----------------~-----------------~~~~~~~~~k~~~l~~ll~~------~~~~~~LVF~~s~~~a~~l 373 (508)
T 3fho_A 334 -----------------L-----------------YMDCQSEEHKYNVLVELYGL------LTIGQSIIFCKKKDTAEEI 373 (508)
T ss_dssp -----------------E-----------------EEEC--CHHHHHHHHHHHC---------CCCEEEBCSSTTTTTHH
T ss_pred -----------------E-----------------EEECCchHHHHHHHHHHHHh------cCCCcEEEEECCHHHHHHH
Confidence 0 00000112233444444422 2467999999999999999
Q ss_pred HHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccC------CC
Q 037446 479 MNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDAN------VS 552 (1165)
Q Consensus 479 ~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p------~S 552 (1165)
+..|...+ +.+..+|| ++++.+|..+++.|++|+.+|||||+++++|||+|++++||++|+| .+
T Consensus 374 ~~~L~~~~--~~v~~~hg--------~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s 443 (508)
T 3fho_A 374 ARRMTADG--HTVACLTG--------NLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPD 443 (508)
T ss_dssp HHHHTTTT--CCCCEEC-------------CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----C
T ss_pred HHHHHhCC--CcEEEEeC--------CCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCC
Confidence 99998877 66666665 7899999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHHHhhcCCCCC-CccceecCh-hHHHHHHHHHHHH
Q 037446 553 PLRMIQRMGRTGRKHD-GRIPHIFKP-EVQFVELSIEQYV 590 (1165)
Q Consensus 553 ~~~yiQriGRagR~Gq-Gkiv~v~~~-d~~~~~~~Ie~~l 590 (1165)
+..|+||+||+||.|+ |.+++++.+ +.......+++++
T Consensus 444 ~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~ 483 (508)
T 3fho_A 444 PQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYF 483 (508)
T ss_dssp THHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHS
T ss_pred HHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHH
Confidence 9999999999999995 887777764 3333344666665
No 27
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.5e-36 Score=371.53 Aligned_cols=398 Identities=16% Similarity=0.187 Sum_probs=256.8
Q ss_pred CCChHHHHHHHHHhhc----------CCeEEEcCCCchHHHHHHHHHHHHHHhCC-----CCeEEEEecChhHHHHHHHH
Q 037446 108 VPVRDYQFAITKTALF----------SNTLVALPTGLGKTLIAAVVIYNFFRWFP-----DGKIVFAAPSRPLVMQQIEA 172 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~----------rnvIl~a~TGsGKTL~a~lpil~~L~~~~-----~~rvLILvPtr~La~Q~~~e 172 (1165)
..||+||.+++.++.. +++|++++||+|||++++..+..++...+ .+++|||||+ +|+.||.++
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 3799999999999852 46899999999999999999988876543 2469999998 999999999
Q ss_pred HHHHhCCCCceEEEEeCCCChHHHHh---hc------CCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccc
Q 037446 173 CHNIVGIPQEWTIDMTGQISPTKRAS---FW------KTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYA 243 (1165)
Q Consensus 173 ~~kl~g~~~~~v~~l~G~~~~~~~~~---l~------~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~ 243 (1165)
+.++++. ...++.+.|+........ .. ...+|+|+||+++..... .+....|++||+||||++++.
T Consensus 133 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~-- 207 (644)
T 1z3i_X 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNS-- 207 (644)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTT--
T ss_pred HHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCCh--
Confidence 9999764 344666666654322111 11 147899999999987543 445567999999999999873
Q ss_pred hHHHHHHHHcCCCCCeEEEEccCCC-CChHHHHHHHHhhccccccccC--------------------------------
Q 037446 244 YCTAIRELMSVPVQLRILALTATPG-SKQQTIQHIIDNLYISTLEYRN-------------------------------- 290 (1165)
Q Consensus 244 ~~~~l~~L~~~~~~~riL~LSATP~-~~~~~l~~Li~~L~is~i~~~~-------------------------------- 290 (1165)
.....+.+..+... +.|+|||||. ++..+++.+++.+.+..+.-..
T Consensus 208 ~~~~~~al~~l~~~-~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 208 DNQTYLALNSMNAQ-RRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp CHHHHHHHHHHCCS-EEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcccC-cEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 33344555544444 6799999994 4446777777666433221000
Q ss_pred -----------CchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhh
Q 037446 291 -----------ESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDK 359 (1165)
Q Consensus 291 -----------~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~ 359 (1165)
.....+..++.......+.+.+.+....+|..+........ . +.
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~------~-~~------------------ 341 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVE------S-LQ------------------ 341 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGG------S-SC------------------
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHH------H-Hh------------------
Confidence 00112223344444456666666666665555443211100 0 00
Q ss_pred hhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCC
Q 037446 360 FRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGA 439 (1165)
Q Consensus 360 ~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~ 439 (1165)
. ... ....+..+..+++++.....- ..... .........+.... ...........
T Consensus 342 --~-------g~~------~~~~l~~l~~Lrk~c~hp~l~--~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~ 396 (644)
T 1z3i_X 342 --T-------GKI------SVSSLSSITSLKKLCNHPALI--YEKCL--TGEEGFDGALDLFP------QNYSTKAVEPQ 396 (644)
T ss_dssp --T-------TCC------CHHHHHHHHHHHHHHHCTHHH--HHHHH--HTCTTCTTGGGTSC------SSCCSSSCCGG
T ss_pred --c-------Ccc------chhHHHHHHHHHHHhCCHHHH--HHHHh--cccchhhhHHhhcc------ccccccccCcc
Confidence 0 000 001111122222222211100 00000 00000000000000 00000000112
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHh
Q 037446 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519 (1165)
Q Consensus 440 ~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr 519 (1165)
.+.|+..|..++..... ..+.|+||||+++..++.|...|...| +.+..++| +++..+|.+++++|+
T Consensus 397 ~s~K~~~l~~ll~~~~~---~~~~k~lIFs~~~~~~~~l~~~l~~~g--~~~~~l~G--------~~~~~~R~~~i~~F~ 463 (644)
T 1z3i_X 397 LSGKMLVLDYILAMTRT---TTSDKVVLVSNYTQTLDLFEKLCRNRR--YLYVRLDG--------TMSIKKRAKIVERFN 463 (644)
T ss_dssp GSHHHHHHHHHHHHHHH---HCCCEEEEEESCHHHHHHHHHHHHHHT--CCEEEECS--------SCCHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHhh---cCCCEEEEEEccHHHHHHHHHHHHHCC--CCEEEEeC--------CCCHHHHHHHHHHhc
Confidence 37788877777765432 147899999999999999999999988 77777776 789999999999999
Q ss_pred cCCc---eEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCccceec
Q 037446 520 AGGY---NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575 (1165)
Q Consensus 520 ~g~~---~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv~v~ 575 (1165)
+|.. .+||+|+++++|||++.+++||+||+|||+..+.|++||++|.||.+-+.+|
T Consensus 464 ~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~ 522 (644)
T 1z3i_X 464 NPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIY 522 (644)
T ss_dssp STTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEE
T ss_pred CCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEE
Confidence 8865 4899999999999999999999999999999999999999999997755554
No 28
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-36 Score=380.31 Aligned_cols=393 Identities=18% Similarity=0.200 Sum_probs=261.5
Q ss_pred CCChHHHHHHHHHhh-----cCCeEEEcCCCchHHHHHHHHHHHHHH-hCCCCeEEEEecChhHHHHHHHHHHHHhCCCC
Q 037446 108 VPVRDYQFAITKTAL-----FSNTLVALPTGLGKTLIAAVVIYNFFR-WFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQ 181 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll-----~rnvIl~a~TGsGKTL~a~lpil~~L~-~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~ 181 (1165)
.+||+||.++++++. ++++||+++||+|||++++..+..++. ....+++|||||. +|+.||.++|.+++ +.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~--p~ 311 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPL-STMPAWLDTFEKWA--PD 311 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCT-TTHHHHHHHHHHHS--TT
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECc-hHHHHHHHHHHHHC--CC
Confidence 589999999999886 278999999999999999888876653 3456789999995 99999999999996 34
Q ss_pred ceEEEEeCCCChHHHH-------------hhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHH
Q 037446 182 EWTIDMTGQISPTKRA-------------SFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAI 248 (1165)
Q Consensus 182 ~~v~~l~G~~~~~~~~-------------~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l 248 (1165)
..+..++|+....... .....++|+|+||+++..... .+....|++|||||||++++. .....
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~--~l~~~~w~~vIvDEaH~lkn~--~s~~~ 387 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA--ELGSIKWQFMAVDEAHRLKNA--ESSLY 387 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH--HHHTSEEEEEEETTGGGGCCS--SSHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH--HHhcCCcceeehhhhhhhcCc--hhHHH
Confidence 5677777766543221 112357899999999987543 233447999999999999873 33344
Q ss_pred HHHHcCCCCCeEEEEccCC-CCChHHHHHHHHhhccccccccCCc----------------------------hhhhhhh
Q 037446 249 RELMSVPVQLRILALTATP-GSKQQTIQHIIDNLYISTLEYRNES----------------------------DQDVSSY 299 (1165)
Q Consensus 249 ~~L~~~~~~~riL~LSATP-~~~~~~l~~Li~~L~is~i~~~~~~----------------------------~~~i~~y 299 (1165)
+.+..+.. .+.|+||||| .++..+++.+++.|.+..+...... ..++...
T Consensus 388 ~~l~~l~~-~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~ 466 (800)
T 3mwy_W 388 ESLNSFKV-ANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKS 466 (800)
T ss_dssp HHHTTSEE-EEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTT
T ss_pred HHHHHhhh-ccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhc
Confidence 55555543 4569999999 5666889999888765433211100 1112222
Q ss_pred hccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHH
Q 037446 300 VHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAY 379 (1165)
Q Consensus 300 ~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~ 379 (1165)
+.......+.+.+.......+..+.......+.... . ...
T Consensus 467 LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~-------------------------------------~---~~~ 506 (800)
T 3mwy_W 467 LPSKTERILRVELSDVQTEYYKNILTKNYSALTAGA-------------------------------------K---GGH 506 (800)
T ss_dssp SCCEEEEEEEECCCHHHHHHHHHHHHHCCC--------------------------------------------------
T ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcc-------------------------------------c---cch
Confidence 344445566777777666666555432111000000 0 000
Q ss_pred HHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccC
Q 037446 380 FGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKD 459 (1165)
Q Consensus 380 ~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~ 459 (1165)
...+..+..+++.+.....-... ................. .. .. ....+.|+..|.++|..+..
T Consensus 507 ~~~l~~l~~Lrk~~~hp~l~~~~---~~~~~~~~~~~~~~~~~----~~---~~---l~~~s~K~~~L~~lL~~~~~--- 570 (800)
T 3mwy_W 507 FSLLNIMNELKKASNHPYLFDNA---EERVLQKFGDGKMTREN----VL---RG---LIMSSGKMVLLDQLLTRLKK--- 570 (800)
T ss_dssp CTHHHHHHHHHHHHHCGGGSSSH---HHHHCCCC----CCSHH----HH---HH---HHHTCHHHHHHHHHHHHHTT---
T ss_pred hhHHHHHHHHHHHhcChhhhcch---HHHHHHhcccccccHHH----HH---HH---hhhcChHHHHHHHHHHHHhh---
Confidence 00111122222222211100000 00000000000000000 00 00 01247899999999988755
Q ss_pred CCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCc---eEEEEcccccccc
Q 037446 460 PKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGY---NVIVATSIGEEGL 536 (1165)
Q Consensus 460 ~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~---~VLVATda~~eGL 536 (1165)
.+.|+||||+++.+++.|...|...| +.+..++| +++..+|.+++++|+++.. .+|++|+++++||
T Consensus 571 -~g~kvLIFsq~~~~ld~L~~~L~~~g--~~~~~i~G--------~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~Gl 639 (800)
T 3mwy_W 571 -DGHRVLIFSQMVRMLDILGDYLSIKG--INFQRLDG--------TVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGI 639 (800)
T ss_dssp -TTCCEEEEESCHHHHHHHHHHHHHHT--CCCEEEST--------TSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTC
T ss_pred -CCCeEEEEechHHHHHHHHHHHHhCC--CCEEEEeC--------CCCHHHHHHHHHHhhCCCCCceEEEEecccccCCC
Confidence 67899999999999999999999888 78777777 7899999999999998553 5999999999999
Q ss_pred cccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCccceec
Q 037446 537 DIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIF 575 (1165)
Q Consensus 537 DIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv~v~ 575 (1165)
|++.+++||+||+|||+..++||+||++|.||.+-+.+|
T Consensus 640 NL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 678 (800)
T 3mwy_W 640 NLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVY 678 (800)
T ss_dssp CCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEE
T ss_pred CccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEE
Confidence 999999999999999999999999999999997755444
No 29
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.4e-36 Score=365.09 Aligned_cols=356 Identities=21% Similarity=0.286 Sum_probs=235.8
Q ss_pred CCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCce-
Q 037446 106 VNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEW- 183 (1165)
Q Consensus 106 t~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~- 183 (1165)
.+++|++||.+++..+.. +++|++++||+|||++|+.++... ++++|||||+++|+.||.++|.+ ++ ..
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~-~~---~~~ 160 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-FG---EEY 160 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGG-GC---GGG
T ss_pred CCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHh-CC---Ccc
Confidence 346899999999998876 679999999999999999998775 57899999999999999999999 54 34
Q ss_pred EEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEE
Q 037446 184 TIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILAL 263 (1165)
Q Consensus 184 v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~L 263 (1165)
+..++|+.. ...+|+|+||+.+...+.. ...+|++|||||||++.+. .|.. +.......++|+|
T Consensus 161 v~~~~g~~~--------~~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~-~~~~----~~~~~~~~~~l~l 224 (472)
T 2fwr_A 161 VGEFSGRIK--------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAE-SYVQ----IAQMSIAPFRLGL 224 (472)
T ss_dssp EEEBSSSCB--------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTST-TTHH----HHHTCCCSEEEEE
T ss_pred eEEECCCcC--------CcCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCCh-HHHH----HHHhcCCCeEEEE
Confidence 677777654 3579999999999876542 2256999999999999875 6643 4444456789999
Q ss_pred ccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccc
Q 037446 264 TATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNR 343 (1165)
Q Consensus 264 SATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~ 343 (1165)
||||.+.......+...+. ...+..........++.......+.+.........+..+...+..++. ..++
T Consensus 225 SATp~~~~~~~~~l~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~---- 295 (472)
T 2fwr_A 225 TATFEREDGRHEILKEVVG--GKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLR---ARGI---- 295 (472)
T ss_dssp ESCCCCTTSGGGSHHHHTC--CEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSS---SCCC----
T ss_pred ecCccCCCCHHHHHHHHhC--CeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHH---hcCc----
Confidence 9999765422212221111 111111112222334444444455555554443333222222111100 0000
Q ss_pred cccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhh
Q 037446 344 DYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNED 423 (1165)
Q Consensus 344 ~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~ 423 (1165)
.......+. .+..... ........+..
T Consensus 296 --~~~~~~~~~----~~~~~~~--~~~~~~~~~~~--------------------------------------------- 322 (472)
T 2fwr_A 296 --TLRRAEDFN----KIVMASG--YDERAYEALRA--------------------------------------------- 322 (472)
T ss_dssp --TTTCCSSST----TTTTTTC--CSSSSSTTTHH---------------------------------------------
T ss_pred --cccchhhHH----HHHHHhc--cCHHHHHHHHH---------------------------------------------
Confidence 000000000 0000000 00000000000
Q ss_pred HHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccC
Q 037446 424 IRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKAS 503 (1165)
Q Consensus 424 ~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ 503 (1165)
.. ...........|+..|.++|.++ .+.++||||++++.++.+++.|. +. .+|
T Consensus 323 ~~------~~~~~~~~~~~k~~~l~~~l~~~------~~~k~lvF~~~~~~~~~l~~~l~-------~~--------~~~ 375 (472)
T 2fwr_A 323 WE------EARRIAFNSKNKIRKLREILERH------RKDKIIIFTRHNELVYRISKVFL-------IP--------AIT 375 (472)
T ss_dssp HH------HHHHHHHSCSHHHHHHHHHHHHT------SSSCBCCBCSCHHHHHHHHHHTT-------CC--------BCC
T ss_pred HH------HHHHHhhcChHHHHHHHHHHHhC------CCCcEEEEECCHHHHHHHHHHhC-------cc--------eee
Confidence 00 00000112467888888888662 47899999999999999998873 22 234
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCC-ccceec
Q 037446 504 KGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDG-RIPHIF 575 (1165)
Q Consensus 504 ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqG-kiv~v~ 575 (1165)
++++..+|.+++++|++|+++|||||+++++|+|+|++++||++|+|||+..|+||+||+||.|+| +.+++|
T Consensus 376 g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 578999999999999999999999999999999999999999999999999999999999999998 544443
No 30
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.4e-35 Score=357.81 Aligned_cols=339 Identities=17% Similarity=0.197 Sum_probs=237.4
Q ss_pred CCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEE
Q 037446 107 NVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTI 185 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~ 185 (1165)
.++|++||.+++..++. +++|++++||+|||++|+.++...+.. ..+++|||+|+++|+.||.++|.++...+...+.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~ 189 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIK 189 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceE
Confidence 46899999999998876 799999999999999999999887754 3459999999999999999999998666667788
Q ss_pred EEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHH-cCCCCCeEEEEc
Q 037446 186 DMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLRILALT 264 (1165)
Q Consensus 186 ~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~-~~~~~~riL~LS 264 (1165)
.+.|+.....+ .+...+|+|+||+.|... ....+.++++|||||||++... . +..++ .+....++|+||
T Consensus 190 ~~~~~~~~~~~--~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~~-~----~~~il~~~~~~~~~l~lS 259 (510)
T 2oca_A 190 KIGGGASKDDK--YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATGK-S----ISSIISGLNNCMFKFGLS 259 (510)
T ss_dssp ECGGGCCTTGG--GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCHH-H----HHHHGGGCTTCCEEEEEE
T ss_pred EEecCCccccc--cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCcc-c----HHHHHHhcccCcEEEEEE
Confidence 88888765443 456789999999987653 3345678999999999999762 2 34443 445667899999
Q ss_pred cCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhccccccc
Q 037446 265 ATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRD 344 (1165)
Q Consensus 265 ATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~ 344 (1165)
|||.+....+..+...+......+... ...-..++.......+.+......... +
T Consensus 260 ATp~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~--------------~---------- 314 (510)
T 2oca_A 260 GSLRDGKANIMQYVGMFGEIFKPVTTS-KLMEDGQVTELKINSIFLRYPDEFTTK--------------L---------- 314 (510)
T ss_dssp SCGGGCSSCHHHHHHHHCSEECCCCCC----------CCEEEEEEEECCHHHHHH--------------H----------
T ss_pred eCCCCCcccHHHhHHhhCCeEEeeCHH-HHhhCCcCCCceEEEEeecCChHHhcc--------------c----------
Confidence 999766544444433333222111110 000112333333333333322111000 0
Q ss_pred ccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhH
Q 037446 345 YQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDI 424 (1165)
Q Consensus 345 ~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~ 424 (1165)
...... ..+...
T Consensus 315 -------------------------------------------------~~~~~~---~~~~~~---------------- 326 (510)
T 2oca_A 315 -------------------------------------------------KGKTYQ---EEIKII---------------- 326 (510)
T ss_dssp -------------------------------------------------TTCCHH---HHHHHH----------------
T ss_pred -------------------------------------------------cccchH---HHHHHH----------------
Confidence 000000 000000
Q ss_pred HHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCC
Q 037446 425 RKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASK 504 (1165)
Q Consensus 425 ~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~g 504 (1165)
.....|...+.+.+.+... ..+.++||||+ ++.++.|++.|...+ .++..+||
T Consensus 327 -------------~~~~~~~~~l~~~l~~~~~---~~~~~~ivf~~-~~~~~~l~~~L~~~~--~~v~~~~g-------- 379 (510)
T 2oca_A 327 -------------TGLSKRNKWIAKLAIKLAQ---KDENAFVMFKH-VSHGKAIFDLIKNEY--DKVYYVSG-------- 379 (510)
T ss_dssp -------------HTCHHHHHHHHHHHHHHHT---TTCEEEEEESS-HHHHHHHHHHHHTTC--SSEEEESS--------
T ss_pred -------------hccHHHHHHHHHHHHHHHh---cCCCeEEEEec-HHHHHHHHHHHHHcC--CCeEEEEC--------
Confidence 0012344556666655433 23556777777 888999999999887 46666665
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEc-ccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCc-cceecC
Q 037446 505 GQSQKVQQAVLEKFRAGGYNVIVAT-SIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGR-IPHIFK 576 (1165)
Q Consensus 505 gms~~eR~~il~~Fr~g~~~VLVAT-da~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGk-iv~v~~ 576 (1165)
++++.+|.++++.|++|+.+||||| +++++|||+|++++||++++|+++..|+|++||+||.|+++ .++++.
T Consensus 380 ~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 380 EVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp STTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 7899999999999999999999999 99999999999999999999999999999999999999865 666654
No 31
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.9e-35 Score=381.17 Aligned_cols=436 Identities=15% Similarity=0.163 Sum_probs=253.4
Q ss_pred CCCCChHHHHHHHHHhhc---CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCc
Q 037446 106 VNVPVRDYQFAITKTALF---SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182 (1165)
Q Consensus 106 t~IQlr~yQ~eal~~ll~---rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~ 182 (1165)
..++|++||.+++.++.. .++|++++||+|||++++.++..++..+..+++|||||+ +|+.||.+++.++++.+
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~-- 226 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLR-- 226 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCC--
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCC--
Confidence 458999999999999886 479999999999999999999988887777899999999 99999999998888654
Q ss_pred eEEEEeCCCChHHH---HhhcCCccEEEEcHHHHHHHHHc-CccCCCCccEEEEcccccccCccch----HHHHHHHHcC
Q 037446 183 WTIDMTGQISPTKR---ASFWKTKRVFFVTPQVLEKDIQS-GTCLMKYLVCLVIDEAHRATGNYAY----CTAIRELMSV 254 (1165)
Q Consensus 183 ~v~~l~G~~~~~~~---~~l~~~~dIlVaTpq~L~~~l~~-~~~~l~~~~lVVIDEAHrl~~~~~~----~~~l~~L~~~ 254 (1165)
+..+.|+...... ...+...+|+|+|++.+.+.... ..+...+|++|||||||++.+.... ...+..+..
T Consensus 227 -v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~- 304 (968)
T 3dmq_A 227 -FALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE- 304 (968)
T ss_dssp -CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT-
T ss_pred -EEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh-
Confidence 4455444322211 12344679999999999754321 2344568999999999999874322 334444433
Q ss_pred CCCCeEEEEccCCC-CChHHHHHHHHhhccccccccCCchhh---------------------------hhhhhccCceE
Q 037446 255 PVQLRILALTATPG-SKQQTIQHIIDNLYISTLEYRNESDQD---------------------------VSSYVHNRKIE 306 (1165)
Q Consensus 255 ~~~~riL~LSATP~-~~~~~l~~Li~~L~is~i~~~~~~~~~---------------------------i~~y~~~~~~~ 306 (1165)
...++|+|||||. +...+++.++..+.+..+......... +...+......
T Consensus 305 -~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~ 383 (968)
T 3dmq_A 305 -HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIE 383 (968)
T ss_dssp -TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSS
T ss_pred -cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhH
Confidence 2346899999995 455566677666654432211000000 00000000000
Q ss_pred EEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHH
Q 037446 307 LIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITL 386 (1165)
Q Consensus 307 ~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l 386 (1165)
.+..................+...+.+.....++ +...+..+. ..+............... ...
T Consensus 384 ~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l------------~r~~r~~i~-~~p~r~~~~~~l~~~~~~---~~~ 447 (968)
T 3dmq_A 384 PLLQAANSDSEDAQSARQELVSMLMDRHGTSRVL------------FRNTRNGVK-GFPKRELHTIKLPLPTQY---QTA 447 (968)
T ss_dssp TTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTE------------ECCCTTTCC-CCCCCCCCEEEECCCHHH---HHH
T ss_pred HHHhcccchhhhhHHHHHHHHHHHHHhhCcchhh------------hhhhhhhhc-ccChhheEeeecCCCHHH---HHH
Confidence 0000000000000000000111111110000000 000000000 000000000000000000 011
Q ss_pred HHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEE
Q 037446 387 YHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVI 466 (1165)
Q Consensus 387 ~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvI 466 (1165)
+............. ............... + ..........+.|+..|.+++... .+.++|
T Consensus 448 ~~~~~~~~~~~~~~-~~~~~~l~pe~~~~~-l------------~~~~~~~~~~~~K~~~L~~ll~~~------~~~k~i 507 (968)
T 3dmq_A 448 IKVSGIMGARKSAE-DRARDMLYPERIYQE-F------------EGDNATWWNFDPRVEWLMGYLTSH------RSQKVL 507 (968)
T ss_dssp HHHHHHTTCCSSGG-GGTHHHHCSGGGTTT-T------------TSSSCCTTTTSHHHHHHHHHHHHT------SSSCCC
T ss_pred HHHHhhhhhhhhhH-HHHhhhcChHHHHHH-h------------hhhhhcccCccHHHHHHHHHHHhC------CCCCEE
Confidence 11111110000000 000000000000000 0 000112234578999999999762 578999
Q ss_pred EEeCchHHHHHHHHHHHh-cCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCC--ceEEEEcccccccccccCCCE
Q 037446 467 IFSNFRGSVRDIMNALAT-IGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG--YNVIVATSIGEEGLDIMEVDL 543 (1165)
Q Consensus 467 VF~~sr~~ae~L~~~L~~-~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~--~~VLVATda~~eGLDIp~vd~ 543 (1165)
|||+++..++.++..|.. .| +++..+|| +|++.+|..++++|++|+ ++|||||+++++|||+|.+++
T Consensus 508 VF~~~~~~~~~l~~~L~~~~g--~~~~~lhG--------~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~ 577 (968)
T 3dmq_A 508 VICAKAATALQLEQVLREREG--IRAAVFHE--------GMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASH 577 (968)
T ss_dssp EECSSTHHHHHHHHHHHTTTC--CCEEEECT--------TSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCE
T ss_pred EEeCcHHHHHHHHHHHHHHcC--CcEEEEeC--------CCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcE
Confidence 999999999999999995 47 77777776 789999999999999998 999999999999999999999
Q ss_pred EEEeccCCCHHHHHHHHhhcCCCCCCccceec-ChhHHHHHHHHHHHHhcC
Q 037446 544 VICFDANVSPLRMIQRMGRTGRKHDGRIPHIF-KPEVQFVELSIEQYVSRG 593 (1165)
Q Consensus 544 VI~~D~p~S~~~yiQriGRagR~GqGkiv~v~-~~d~~~~~~~Ie~~l~~~ 593 (1165)
||+||+||++..|+||+||+||.|+.+.+.++ ......+...|.+.+.++
T Consensus 578 VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k 628 (968)
T 3dmq_A 578 MVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEG 628 (968)
T ss_dssp EECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHT
T ss_pred EEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhC
Confidence 99999999999999999999999975533333 222222334555555433
No 32
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.6e-34 Score=363.03 Aligned_cols=361 Identities=19% Similarity=0.237 Sum_probs=244.5
Q ss_pred CCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHH-hh-cCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEE
Q 037446 81 EGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKT-AL-FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157 (1165)
Q Consensus 81 ~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~-ll-~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvL 157 (1165)
+.++|++ +|++.+.+.+...||.. ++++|.+++.. +. ++++|+++|||+|||++|.+++++.+.. .++++|
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~-----l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~il 79 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKK-----LNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-NGGKAI 79 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCB-----CCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-SCSEEE
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCC-----CCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-CCCeEE
Confidence 3467999 99999999999988874 67788999988 33 3899999999999999999999887653 357999
Q ss_pred EEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccccc
Q 037446 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHR 237 (1165)
Q Consensus 158 ILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHr 237 (1165)
|++|+++|+.|+.+.++++. ..+..+..++|+.....+. ...++|+|+||++|...+......+.++++|||||||.
T Consensus 80 ~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~--~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW--LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHY 156 (715)
T ss_dssp EECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG--GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGG
T ss_pred EEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh--cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhh
Confidence 99999999999999996542 2245688888877654321 24789999999999998887666688999999999999
Q ss_pred ccCccchHHHHHHHHcCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHH
Q 037446 238 ATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAV 317 (1165)
Q Consensus 238 l~~~~~~~~~l~~L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~ 317 (1165)
+.+. .+...+..+.......++|+||||+++. +.+...+ ....+. .... .-+....+.......
T Consensus 157 l~~~-~~~~~l~~i~~~~~~~~ii~lSATl~n~-~~~~~~l---~~~~~~--~~~r-------~~~l~~~~~~~~~~~-- 220 (715)
T 2va8_A 157 LNDP-ERGPVVESVTIRAKRRNLLALSATISNY-KQIAKWL---GAEPVA--TNWR-------PVPLIEGVIYPERKK-- 220 (715)
T ss_dssp GGCT-TTHHHHHHHHHHHHTSEEEEEESCCTTH-HHHHHHH---TCEEEE--CCCC-------SSCEEEEEEEECSST--
T ss_pred cCCc-ccchHHHHHHHhcccCcEEEEcCCCCCH-HHHHHHh---CCCccC--CCCC-------CCCceEEEEecCCcc--
Confidence 8753 4444444444322267999999999763 3333332 211000 0000 000000000000000
Q ss_pred HHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCC
Q 037446 318 EINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHG 397 (1165)
Q Consensus 318 ~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g 397 (1165)
..+ .+ .+..
T Consensus 221 -------------------------~~~------~~-----~~~~----------------------------------- 229 (715)
T 2va8_A 221 -------------------------KEY------NV-----IFKD----------------------------------- 229 (715)
T ss_dssp -------------------------TEE------EE-----EETT-----------------------------------
T ss_pred -------------------------cce------ee-----ecCc-----------------------------------
Confidence 000 00 0000
Q ss_pred chHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHH
Q 037446 398 IRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRD 477 (1165)
Q Consensus 398 ~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~ 477 (1165)
..... + .....++..+.+.+ . .+.++||||++++.++.
T Consensus 230 --------------~~~~~-~-------------------~~~~~~~~~~~~~~----~----~~~~~LVF~~s~~~~~~ 267 (715)
T 2va8_A 230 --------------NTTKK-V-------------------HGDDAIIAYTLDSL----S----KNGQVLVFRNSRKMAES 267 (715)
T ss_dssp --------------SCEEE-E-------------------ESSSHHHHHHHHHH----T----TTCCEEEECSSHHHHHH
T ss_pred --------------chhhh-c-------------------ccchHHHHHHHHHH----h----cCCCEEEEECCHHHHHH
Confidence 00000 0 00012222233222 2 46899999999999999
Q ss_pred HHHHHHhcCCC--ccc------------------------eeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEccc
Q 037446 478 IMNALATIGDL--VKA------------------------TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSI 531 (1165)
Q Consensus 478 L~~~L~~~g~~--i~~------------------------~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda 531 (1165)
++..|...... +.. ....+...+.+|++|++++|..+++.|++|.++|||||++
T Consensus 268 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~ 347 (715)
T 2va8_A 268 TALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPT 347 (715)
T ss_dssp HHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGG
T ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChH
Confidence 99999875311 000 0000112345778999999999999999999999999999
Q ss_pred ccccccccCCCEEEE----ec-------cCCCHHHHHHHHhhcCCCC---CCccceecChhH
Q 037446 532 GEEGLDIMEVDLVIC----FD-------ANVSPLRMIQRMGRTGRKH---DGRIPHIFKPEV 579 (1165)
Q Consensus 532 ~~eGLDIp~vd~VI~----~D-------~p~S~~~yiQriGRagR~G---qGkiv~v~~~d~ 579 (1165)
+++|||+|++++||+ || .|.|...|+||+|||||.| .|.+++++..+.
T Consensus 348 l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 348 LAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp GGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 999999999999999 99 8999999999999999999 577888887654
No 33
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4.7e-34 Score=359.93 Aligned_cols=351 Identities=19% Similarity=0.218 Sum_probs=241.1
Q ss_pred CCCCc-c--CCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEE
Q 037446 83 SSFDE-S--LCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVF 158 (1165)
Q Consensus 83 ~sFee-~--L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLI 158 (1165)
++|++ + |++.+.+.+...||..++++| .+++..+.. +++|+++|||+|||++|.++++..+.. ++++||
T Consensus 1 m~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q-----~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~l~ 73 (702)
T 2p6r_A 1 MKVEELAESISSYAVGILKEEGIEELFPPQ-----AEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--GGKSLY 73 (702)
T ss_dssp CCSHHHHHHHHHHHHHHHHCC---CCCCCC-----HHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--TCCEEE
T ss_pred CchhhhhhccCHHHHHHHHhCCCCCCCHHH-----HHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--CCcEEE
Confidence 36777 6 999999999999998776666 566666554 899999999999999999999887653 579999
Q ss_pred EecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccc
Q 037446 159 AAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRA 238 (1165)
Q Consensus 159 LvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl 238 (1165)
++|+++|+.|+.+.++++ +..+..+..++|+.....+ ....++|+|+||++|...+......+.++++|||||||.+
T Consensus 74 i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~--~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l 150 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKW-EKIGLRIGISTGDYESRDE--HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLL 150 (702)
T ss_dssp EESSHHHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS--CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGG
T ss_pred EeCcHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh--hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeec
Confidence 999999999999999654 3335678888888765332 2347899999999999988876666889999999999999
Q ss_pred cCccchH----HHHHHHHcCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccch
Q 037446 239 TGNYAYC----TAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQ 314 (1165)
Q Consensus 239 ~~~~~~~----~~l~~L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~ 314 (1165)
.+. .+. ..+..+.......++|+||||+++. ..+.. .+....+. ... .+......+....
T Consensus 151 ~~~-~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~-~~~~~---~l~~~~~~--~~~---------r~~~l~~~~~~~~ 214 (702)
T 2p6r_A 151 DSE-KRGATLEILVTKMRRMNKALRVIGLSATAPNV-TEIAE---WLDADYYV--SDW---------RPVPLVEGVLCEG 214 (702)
T ss_dssp GCT-TTHHHHHHHHHHHHHHCTTCEEEEEECCCTTH-HHHHH---HTTCEEEE--CCC---------CSSCEEEEEECSS
T ss_pred CCC-CcccHHHHHHHHHHhcCcCceEEEECCCcCCH-HHHHH---HhCCCccc--CCC---------CCccceEEEeeCC
Confidence 763 222 2333344445678999999999762 33332 22211000 000 0000000000000
Q ss_pred hHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHh
Q 037446 315 EAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLS 394 (1165)
Q Consensus 315 ~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~ 394 (1165)
. .. +..
T Consensus 215 -----------------------------~------~~-------~~~-------------------------------- 220 (702)
T 2p6r_A 215 -----------------------------T------LE-------LFD-------------------------------- 220 (702)
T ss_dssp -----------------------------E------EE-------EEE--------------------------------
T ss_pred -----------------------------e------ee-------ccC--------------------------------
Confidence 0 00 000
Q ss_pred hCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHH
Q 037446 395 SHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS 474 (1165)
Q Consensus 395 ~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ 474 (1165)
+ .... . ..-.+...+.+.+ . .+.++||||++++.
T Consensus 221 --~---------------~~~~-~--------------------~~~~~~~~~~~~~----~----~~~~~LVF~~s~~~ 254 (702)
T 2p6r_A 221 --G---------------AFST-S--------------------RRVKFEELVEECV----A----ENGGVLVFESTRRG 254 (702)
T ss_dssp --T---------------TEEE-E--------------------EECCHHHHHHHHH----H----TTCCEEEECSSHHH
T ss_pred --c---------------chhh-h--------------------hhhhHHHHHHHHH----h----cCCCEEEEcCCHHH
Confidence 0 0000 0 0000122222222 2 46899999999999
Q ss_pred HHHHHHHHHhcCCC-ccc-------------------eeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccc
Q 037446 475 VRDIMNALATIGDL-VKA-------------------TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEE 534 (1165)
Q Consensus 475 ae~L~~~L~~~g~~-i~~-------------------~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~e 534 (1165)
++.++..|...... +.. ....+...+.+|++|++++|..+++.|++|.++|||||+++++
T Consensus 255 ~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~ 334 (702)
T 2p6r_A 255 AEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAA 334 (702)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTS
T ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhc
Confidence 99999998753100 000 0000123456788999999999999999999999999999999
Q ss_pred cccccCCCEEEE----ec---cCCCHHHHHHHHhhcCCCC---CCccceecChhH
Q 037446 535 GLDIMEVDLVIC----FD---ANVSPLRMIQRMGRTGRKH---DGRIPHIFKPEV 579 (1165)
Q Consensus 535 GLDIp~vd~VI~----~D---~p~S~~~yiQriGRagR~G---qGkiv~v~~~d~ 579 (1165)
|||+|++++||+ || .|.+...|+||+|||||.| .|.+++++..+.
T Consensus 335 Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 335 GVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp SSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred cCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 999999999999 76 7999999999999999999 577888887765
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-34 Score=371.71 Aligned_cols=368 Identities=18% Similarity=0.246 Sum_probs=239.6
Q ss_pred CCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEE
Q 037446 107 NVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTI 185 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~ 185 (1165)
+++|+++|.+++..+.. +++||++|||+|||++|.+++...+. .++++||++|+++|+.||.++|.++++ .+.
T Consensus 84 ~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--~g~rvL~l~PtkaLa~Q~~~~l~~~~~----~vg 157 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQKYRELLAEFG----DVG 157 (1010)
T ss_dssp SSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHHHS----CEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc--cCCeEEEECChHHHHHHHHHHHHHHhC----CEE
Confidence 35799999999999886 78999999999999999999988775 357999999999999999999999887 477
Q ss_pred EEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHH-cCCCCCeEEEEc
Q 037446 186 DMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLRILALT 264 (1165)
Q Consensus 186 ~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~-~~~~~~riL~LS 264 (1165)
.++|+.... .+++|+|+||++|.+.+.++...+.++++|||||||++.+. .+...+..++ .++...++|+||
T Consensus 158 lltGd~~~~------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~-~rg~~~e~il~~l~~~~~il~LS 230 (1010)
T 2xgj_A 158 LMTGDITIN------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDK-ERGVVWEETIILLPDKVRYVFLS 230 (1010)
T ss_dssp EECSSCEEC------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCT-TTHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEeCCCccC------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhccc-chhHHHHHHHHhcCCCCeEEEEc
Confidence 788887642 46899999999999988877778899999999999999875 3444444443 466778999999
Q ss_pred cCCCCChHHHHHHHHhhcc--ccccccCCchhhhhhhhccCc--eEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhccc
Q 037446 265 ATPGSKQQTIQHIIDNLYI--STLEYRNESDQDVSSYVHNRK--IELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLL 340 (1165)
Q Consensus 265 ATP~~~~~~l~~Li~~L~i--s~i~~~~~~~~~i~~y~~~~~--~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl 340 (1165)
||+++..+ +...+..+.- ..+.........+..|+.... .....+....
T Consensus 231 ATi~n~~e-~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~-------------------------- 283 (1010)
T 2xgj_A 231 ATIPNAME-FAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKS-------------------------- 283 (1010)
T ss_dssp CCCTTHHH-HHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTC--------------------------
T ss_pred CCCCCHHH-HHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeecccc--------------------------
Confidence 99987543 3333332211 111100000001111111000 0000000000
Q ss_pred ccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccc
Q 037446 341 QNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSK 420 (1165)
Q Consensus 341 ~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~ 420 (1165)
.+....+......+... .+.... .....+.+....
T Consensus 284 ------~~~~~~~~~~~~~l~~~--------------------------------~~~~~~-----~~~~~g~~~~~~-- 318 (1010)
T 2xgj_A 284 ------TFREENFQKAMASISNQ--------------------------------IGDDPN-----STDSRGKKGQTY-- 318 (1010)
T ss_dssp ------CBCHHHHHHHHHTCC-----------------------------------------------------------
T ss_pred ------ccchHHHHHHHHHHhhh--------------------------------hccccc-----cccccccccccc--
Confidence 00000000000000000 000000 000000000000
Q ss_pred hhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCcccee-------
Q 037446 421 NEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATE------- 493 (1165)
Q Consensus 421 ~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~------- 493 (1165)
+... ........+..+++.+... ...++||||+++..|+.++..|...+ +....
T Consensus 319 -----k~~~------~~~~~~~~l~~l~~~l~~~------~~~~~IVF~~sr~~~e~la~~L~~~~--~~~~~e~~~i~~ 379 (1010)
T 2xgj_A 319 -----KGGS------AKGDAKGDIYKIVKMIWKK------KYNPVIVFSFSKRDCEELALKMSKLD--FNSDDEKEALTK 379 (1010)
T ss_dssp ---------------------CHHHHHHHHHHHH------TCCSEEEEESSHHHHHHHHHTTTTSC--CCCHHHHHHHHH
T ss_pred -----cccc------ccccchHHHHHHHHHHHhc------CCCCEEEEECCHHHHHHHHHHHHhCC--CCChHHHHHHHH
Confidence 0000 0000023444555555432 35699999999999999999997755 22110
Q ss_pred --------e----------------ecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEE---
Q 037446 494 --------F----------------IGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC--- 546 (1165)
Q Consensus 494 --------l----------------~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~--- 546 (1165)
+ .....+.+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 380 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~ 459 (1010)
T 2xgj_A 380 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 459 (1010)
T ss_dssp HHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSE
T ss_pred HHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCc
Confidence 0 1122346788999999999999999999999999999999999999999999
Q ss_pred -ecc----CCCHHHHHHHHhhcCCCCC---CccceecChh
Q 037446 547 -FDA----NVSPLRMIQRMGRTGRKHD---GRIPHIFKPE 578 (1165)
Q Consensus 547 -~D~----p~S~~~yiQriGRagR~Gq---Gkiv~v~~~d 578 (1165)
||. |+++..|+||+|||||.|+ |.+++++.+.
T Consensus 460 kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 460 KWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred ccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 999 9999999999999999995 7788887654
No 35
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.4e-34 Score=363.52 Aligned_cols=350 Identities=19% Similarity=0.218 Sum_probs=244.5
Q ss_pred CCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHH-hhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEE
Q 037446 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKT-ALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~-ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLIL 159 (1165)
++|++ +|++.+.+.+...||.. ++++|.+++.. +.. +++|+++|||+|||++|.+++++.+.. .++++||+
T Consensus 1 ~~f~~l~l~~~~~~~l~~~g~~~-----l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~~l~i 74 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKERGIES-----FYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT-QGGKAVYI 74 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHTTCCB-----CCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH-HCSEEEEE
T ss_pred CcHhhcCCCHHHHHHHHHCCCCC-----CCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence 36888 99999999999988874 67788999987 443 889999999999999999999877653 25799999
Q ss_pred ecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 160 APSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 160 vPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
+|+++|+.|+.+.++++... +..+..++|+.....+ ....++|+|+||++|...+......+.++++|||||||++.
T Consensus 75 ~P~raLa~q~~~~~~~l~~~-g~~v~~~~G~~~~~~~--~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEKI-GLRVAMATGDYDSKDE--WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIG 151 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGGG-TCCEEEECSCSSCCCG--GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGG
T ss_pred cCcHHHHHHHHHHHHHHHhc-CCEEEEecCCCCcccc--ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccC
Confidence 99999999999999754322 4568888887665432 23578999999999999888766668899999999999998
Q ss_pred CccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHH
Q 037446 240 GNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVE 318 (1165)
Q Consensus 240 ~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~ 318 (1165)
+. .+...+..++. +....++|+||||+++. ..+.. .+....+. ... .+......+....
T Consensus 152 ~~-~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~---~l~~~~~~--~~~---------rp~~l~~~~~~~~---- 211 (720)
T 2zj8_A 152 SR-DRGATLEVILAHMLGKAQIIGLSATIGNP-EELAE---WLNAELIV--SDW---------RPVKLRRGVFYQG---- 211 (720)
T ss_dssp CT-TTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHH---HTTEEEEE--CCC---------CSSEEEEEEEETT----
T ss_pred CC-cccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHH---HhCCcccC--CCC---------CCCcceEEEEeCC----
Confidence 63 33334444332 22378999999999763 32332 22211000 000 0000000000000
Q ss_pred HHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCc
Q 037446 319 INNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGI 398 (1165)
Q Consensus 319 i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~ 398 (1165)
. .. +.. +.
T Consensus 212 -------------------------~------~~-------~~~----------------------------------~~ 219 (720)
T 2zj8_A 212 -------------------------F------VT-------WED----------------------------------GS 219 (720)
T ss_dssp -------------------------E------EE-------ETT----------------------------------SC
T ss_pred -------------------------e------ee-------ccc----------------------------------cc
Confidence 0 00 000 00
Q ss_pred hHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHH
Q 037446 399 RPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDI 478 (1165)
Q Consensus 399 ~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L 478 (1165)
. .....+...+.+.+ . .+.++||||++++.++.+
T Consensus 220 ~--------------------------------------~~~~~~~~~~~~~~----~----~~~~~LVF~~sr~~~~~~ 253 (720)
T 2zj8_A 220 I--------------------------------------DRFSSWEELVYDAI----R----KKKGALIFVNMRRKAERV 253 (720)
T ss_dssp E--------------------------------------EECSSTTHHHHHHH----H----TTCCEEEECSCHHHHHHH
T ss_pred h--------------------------------------hhhhHHHHHHHHHH----h----CCCCEEEEecCHHHHHHH
Confidence 0 00011222233333 2 368999999999999999
Q ss_pred HHHHHhcCCC----------------cc-------ceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEccccccc
Q 037446 479 MNALATIGDL----------------VK-------ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEG 535 (1165)
Q Consensus 479 ~~~L~~~g~~----------------i~-------~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eG 535 (1165)
+..|...... +. .........+.+|++|++.+|..+++.|++|.++|||||+++++|
T Consensus 254 a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~G 333 (720)
T 2zj8_A 254 ALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAG 333 (720)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGG
T ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhcc
Confidence 9999764210 00 000001123456789999999999999999999999999999999
Q ss_pred ccccCCCEEEE----ec----cCCCHHHHHHHHhhcCCCC---CCccceecChhH
Q 037446 536 LDIMEVDLVIC----FD----ANVSPLRMIQRMGRTGRKH---DGRIPHIFKPEV 579 (1165)
Q Consensus 536 LDIp~vd~VI~----~D----~p~S~~~yiQriGRagR~G---qGkiv~v~~~d~ 579 (1165)
||+|++++||+ || .|.+...|+||+|||||.| .|++++++..+.
T Consensus 334 vdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 334 INTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp CCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred CCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 99999999998 77 6999999999999999998 477888887654
No 36
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-34 Score=375.65 Aligned_cols=368 Identities=18% Similarity=0.237 Sum_probs=236.3
Q ss_pred CCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceE
Q 037446 106 VNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWT 184 (1165)
Q Consensus 106 t~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v 184 (1165)
.+++|+++|.+++..+.. +++|++++||+|||++|+++++..+. .++++||++||++|+.|+++.|.++++ .+
T Consensus 181 ~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--~g~rvlvl~PtraLa~Q~~~~l~~~~~----~V 254 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQKYRELLAEFG----DV 254 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHHTS----SE
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEcCcHHHHHHHHHHHHHHhC----Cc
Confidence 345789999999999887 89999999999999999999998875 457899999999999999999999877 37
Q ss_pred EEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHH-cCCCCCeEEEE
Q 037446 185 IDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELM-SVPVQLRILAL 263 (1165)
Q Consensus 185 ~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~-~~~~~~riL~L 263 (1165)
..++|+... ..+++|+|+||++|.+.+..+...+.++++|||||||++.+. ++...+..++ .++...++|+|
T Consensus 255 glltGd~~~------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~-~rg~~~e~ii~~l~~~~qvl~l 327 (1108)
T 3l9o_A 255 GLMTGDITI------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDK-ERGVVWEETIILLPDKVRYVFL 327 (1108)
T ss_dssp EEECSSCBC------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSH-HHHHHHHHHHHHSCTTSEEEEE
T ss_pred cEEeCcccc------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcccc-chHHHHHHHHHhcCCCceEEEE
Confidence 778888763 356899999999999999887777889999999999999875 5555555554 46778999999
Q ss_pred ccCCCCChHHHHHHHHhhccc--cccccCCchhhhhhhhc---cCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhc
Q 037446 264 TATPGSKQQTIQHIIDNLYIS--TLEYRNESDQDVSSYVH---NRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIG 338 (1165)
Q Consensus 264 SATP~~~~~~l~~Li~~L~is--~i~~~~~~~~~i~~y~~---~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~ 338 (1165)
|||+++..+ +..++...... .+.........+..|+. ......+.-..+..... .+...+
T Consensus 328 SATipn~~e-~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~---~~~~~~----------- 392 (1108)
T 3l9o_A 328 SATIPNAME-FAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREE---NFQKAM----------- 392 (1108)
T ss_dssp ECSCSSCHH-HHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHH---HHHHHH-----------
T ss_pred cCCCCCHHH-HHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhh---hHHHHH-----------
Confidence 999877644 33333332211 11110000011111110 00000111000000000 000000
Q ss_pred ccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcc
Q 037446 339 LLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFM 418 (1165)
Q Consensus 339 vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll 418 (1165)
..+........ ... ...+... . ....+
T Consensus 393 -------------------~~l~~~~~~~~---~~~-------------------~~~~~~~---~---~~~~~------ 419 (1108)
T 3l9o_A 393 -------------------ASISNQIGDDP---NST-------------------DSRGKKG---Q---TYKGG------ 419 (1108)
T ss_dssp -------------------TTC----------------------------------------------------------
T ss_pred -------------------HHHHhhhcccc---ccc-------------------ccccccc---c---ccccc------
Confidence 00000000000 000 0000000 0 00000
Q ss_pred cchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccce------
Q 037446 419 SKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKAT------ 492 (1165)
Q Consensus 419 ~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~------ 492 (1165)
........++..++..+... ...++||||+++..|+.++..|...+ +...
T Consensus 420 ----------------~~~~~~~~~l~~li~~l~~~------~~~~vIVF~~sr~~~e~la~~L~~~~--~~~~~e~~~i 475 (1108)
T 3l9o_A 420 ----------------SAKGDAKGDIYKIVKMIWKK------KYNPVIVFSFSKRDCEELALKMSKLD--FNSDDEKEAL 475 (1108)
T ss_dssp ---------------------CHHHHHHHHHHHHHT------TCCCEEEEESCHHHHHHHHHHTCSHH--HHCC----CH
T ss_pred ----------------cccccchhHHHHHHHHHHhc------CCCCEEEEeCcHHHHHHHHHHHHhcc--CCCHHHHHHH
Confidence 00000123344445444331 36799999999999999999986543 2110
Q ss_pred -------------------------eeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEe
Q 037446 493 -------------------------EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICF 547 (1165)
Q Consensus 493 -------------------------~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~ 547 (1165)
......++.+|++|++.+|..+++.|++|.++|||||+++++|||+|++++||++
T Consensus 476 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~ 555 (1108)
T 3l9o_A 476 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS 555 (1108)
T ss_dssp HHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESC
T ss_pred HHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEec
Confidence 0001113457789999999999999999999999999999999999999999977
Q ss_pred ccC--------CCHHHHHHHHhhcCCCC---CCccceecChh
Q 037446 548 DAN--------VSPLRMIQRMGRTGRKH---DGRIPHIFKPE 578 (1165)
Q Consensus 548 D~p--------~S~~~yiQriGRagR~G---qGkiv~v~~~d 578 (1165)
+.+ .|+..|+||+|||||.| .|.+++++.+.
T Consensus 556 ~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 556 VRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp SEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 664 47788999999999999 47777777654
No 37
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=6.2e-34 Score=351.81 Aligned_cols=350 Identities=17% Similarity=0.254 Sum_probs=196.6
Q ss_pred CCCCCChHHHHHHHHHhhc------CCeEEEcCCCchHHHHHHHHHHHHHHhC-------CCCeEEEEecChhHHHHHH-
Q 037446 105 PVNVPVRDYQFAITKTALF------SNTLVALPTGLGKTLIAAVVIYNFFRWF-------PDGKIVFAAPSRPLVMQQI- 170 (1165)
Q Consensus 105 Pt~IQlr~yQ~eal~~ll~------rnvIl~a~TGsGKTL~a~lpil~~L~~~-------~~~rvLILvPtr~La~Q~~- 170 (1165)
...+.+|+||.+++.++.. +++|++++||+|||++++.++..++... ..+++|||+||++|+.||.
T Consensus 174 ~~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 174 VSGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp C----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC----------
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHH
Confidence 4457899999999999864 5689999999999999888887777655 6789999999999999999
Q ss_pred HHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHH----cCccCCCCccEEEEcccccccCccchHH
Q 037446 171 EACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQ----SGTCLMKYLVCLVIDEAHRATGNYAYCT 246 (1165)
Q Consensus 171 ~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~----~~~~~l~~~~lVVIDEAHrl~~~~~~~~ 246 (1165)
+.+..+ +. .+..+.++. ...+.+|+|+||++|..... ...+....+++|||||||++... . ..
T Consensus 254 ~~~~~~-~~---~~~~~~~~~-------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~-~-~~ 320 (590)
T 3h1t_A 254 KTFTPF-GD---ARHKIEGGK-------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSAR-D-NS 320 (590)
T ss_dssp -CCTTT-CS---SEEECCC---------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------
T ss_pred HHHHhc-ch---hhhhhhccC-------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccccc-c-hH
Confidence 777764 32 233343332 22568999999999988764 23455678999999999999763 1 12
Q ss_pred HHHHHHcCCCCCeEEEEccCCCCChH-HHHHHHHhhccccccccCCchhhh-hhhhccCceEEEEeccchhHHHHHHHHH
Q 037446 247 AIRELMSVPVQLRILALTATPGSKQQ-TIQHIIDNLYISTLEYRNESDQDV-SSYVHNRKIELIEVEMGQEAVEINNRIW 324 (1165)
Q Consensus 247 ~l~~L~~~~~~~riL~LSATP~~~~~-~l~~Li~~L~is~i~~~~~~~~~i-~~y~~~~~~~~i~v~~~~~~~~i~~~l~ 324 (1165)
.++.++......++|+|||||.+... ....++.. ..+.......+ ..++.......+...............
T Consensus 321 ~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~-----~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~- 394 (590)
T 3h1t_A 321 NWREILEYFEPAFQIGMTATPLREDNRDTYRYFGN-----PIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGD- 394 (590)
T ss_dssp -CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCS-----CSEEECHHHHHHHTSSCCEEEEEEEETTCC----------
T ss_pred HHHHHHHhCCcceEEEeccccccccchhHHHHcCC-----ceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccc-
Confidence 23444444455689999999976542 22222211 00000000101 111111111111111110000000000
Q ss_pred HHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHH
Q 037446 325 EVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEM 404 (1165)
Q Consensus 325 ~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~ 404 (1165)
+.. .+ ..
T Consensus 395 ---------------------------------------------------~~~-----------------~~-----~~ 401 (590)
T 3h1t_A 395 ---------------------------------------------------VDR-----------------FG-----RE 401 (590)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------ccc-----------------cc-----cc
Confidence 000 00 00
Q ss_pred HHH-HHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHH
Q 037446 405 LEE-KLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALA 483 (1165)
Q Consensus 405 L~~-~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~ 483 (1165)
+.. .+... .+..... ...+...+.+.|.+++. ....+.++||||+++.+|+.+++.|.
T Consensus 402 ~~~~~~~~~----------~~~~~~~----------~~~r~~~i~~~l~~~l~-~~~~~~k~lVF~~~~~~a~~l~~~L~ 460 (590)
T 3h1t_A 402 IPDGEYQTK----------DFERVIA----------LKARTDAFAKHLTDFMK-RTDRFAKTIVFCVDQEHADEMRRALN 460 (590)
T ss_dssp -------CC----------SHHHHHH----------HHHTHHHHHHHHHHHHH-HHCTTSEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCHH----------HhhhHhc----------ChHHHHHHHHHHHHHHH-hcCCCccEEEEECCHHHHHHHHHHHH
Confidence 000 00000 0000000 01233444444444433 22356899999999999999999998
Q ss_pred hcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCce---EEEEcccccccccccCCCEEEEeccCCCHHHHHHHH
Q 037446 484 TIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN---VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRM 560 (1165)
Q Consensus 484 ~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~---VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQri 560 (1165)
..+ ......++.....+||.++ ++|.+++++|++|+.. |||||+++++|||+|.+++||++++|+|+..|+||+
T Consensus 461 ~~~--~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~i 537 (590)
T 3h1t_A 461 NLN--SDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIV 537 (590)
T ss_dssp HHT--HHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHH
T ss_pred Hhh--hhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHH
Confidence 876 2211111211223344554 4799999999998765 889999999999999999999999999999999999
Q ss_pred hhcCCCCC--Cc
Q 037446 561 GRTGRKHD--GR 570 (1165)
Q Consensus 561 GRagR~Gq--Gk 570 (1165)
||++|.|+ |+
T Consensus 538 GR~~R~~~~~~k 549 (590)
T 3h1t_A 538 GRGTRLREDYGK 549 (590)
T ss_dssp TTSCCCBGGGTB
T ss_pred hhhcccCccCCC
Confidence 99999986 65
No 38
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.1e-32 Score=359.40 Aligned_cols=275 Identities=16% Similarity=0.222 Sum_probs=198.9
Q ss_pred CChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEE
Q 037446 109 PVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDM 187 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l 187 (1165)
+|+++|.+++..++. +++|++++||+|||++|+.+++..+ ..++++|||+||++|+.|+.+.+.++. .....+..+
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l 154 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGF 154 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEE
Confidence 577888998888876 8999999999999998888887766 356789999999999999999999954 556788999
Q ss_pred eCCCChHH----HHhhcCC-ccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCc----------cchHHH-HHHH
Q 037446 188 TGQISPTK----RASFWKT-KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGN----------YAYCTA-IREL 251 (1165)
Q Consensus 188 ~G~~~~~~----~~~l~~~-~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~----------~~~~~~-l~~L 251 (1165)
+|+.+... ...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++... .+|... +..+
T Consensus 155 ~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~i 232 (1104)
T 4ddu_A 155 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 232 (1104)
T ss_dssp CTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHH
Confidence 99987632 2344444 89999999999887764 66788999999999987642 133333 4444
Q ss_pred Hc-CC-----------CCCeEEEEccCC-CCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHH
Q 037446 252 MS-VP-----------VQLRILALTATP-GSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVE 318 (1165)
Q Consensus 252 ~~-~~-----------~~~riL~LSATP-~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~ 318 (1165)
+. ++ ...++++||||+ +..... .++..+.. +..... ......+.
T Consensus 233 l~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~--~~~~~~l~--i~v~~~-------~~~~~~i~------------ 289 (1104)
T 4ddu_A 233 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRP--LLFRDLLN--FTVGRL-------VSVARNIT------------ 289 (1104)
T ss_dssp HHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTT--HHHHHHTC--CCCCBC-------CCCCCCEE------------
T ss_pred HHhcccchhhhhhccCCCceEEEEcCCCCcHHHHH--HHhhccee--EEeccC-------CCCcCCce------------
Confidence 43 22 568999999995 332210 11111000 000000 00000000
Q ss_pred HHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCc
Q 037446 319 INNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGI 398 (1165)
Q Consensus 319 i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~ 398 (1165)
T Consensus 290 -------------------------------------------------------------------------------- 289 (1104)
T 4ddu_A 290 -------------------------------------------------------------------------------- 289 (1104)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHH
Q 037446 399 RPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDI 478 (1165)
Q Consensus 399 ~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L 478 (1165)
+.+ ....|...|.++|... +.++||||++++.++.+
T Consensus 290 ----------------------------------~~~---~~~~k~~~L~~ll~~~-------~~~~LVF~~s~~~a~~l 325 (1104)
T 4ddu_A 290 ----------------------------------HVR---ISSRSKEKLVELLEIF-------RDGILIFAQTEEEGKEL 325 (1104)
T ss_dssp ----------------------------------EEE---ESCCCHHHHHHHHHHH-------CSSEEEEESSSHHHHHH
T ss_pred ----------------------------------eEE---EecCHHHHHHHHHHhc-------CCCEEEEECcHHHHHHH
Confidence 000 0013445566666552 47999999999999999
Q ss_pred HHHHHhcCCCccce-eeecccccccCCCCCHHHHHHHHHHHhcCCceEEEE----cccccccccccC-CCEEEEeccCC
Q 037446 479 MNALATIGDLVKAT-EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVA----TSIGEEGLDIME-VDLVICFDANV 551 (1165)
Q Consensus 479 ~~~L~~~g~~i~~~-~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVA----Tda~~eGLDIp~-vd~VI~~D~p~ 551 (1165)
+..|...| +.+. .+|| +|++ +++|++|+.+|||| |+++++|||+|+ |++||+||+|.
T Consensus 326 ~~~L~~~g--~~~~~~lhg-------------~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 326 YEYLKRFK--FNVGETWSE-------------FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHHHHTT--CCEEESSSS-------------HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred HHHHHhCC--CCeeeEecC-------------cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 99999988 7776 6665 2555 99999999999999 999999999999 99999999998
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.2e-32 Score=351.32 Aligned_cols=406 Identities=15% Similarity=0.146 Sum_probs=236.0
Q ss_pred CCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCC
Q 037446 102 WIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIP 180 (1165)
Q Consensus 102 ~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~ 180 (1165)
+....+++|+++|.+++..+.. +++|++++||+|||++|++++...+. .++++||++|+++|+.|+++.+.++++
T Consensus 32 ~~~~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~--~g~~vlvl~PtraLa~Q~~~~l~~~~~-- 107 (997)
T 4a4z_A 32 PARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR--NMTKTIYTSPIKALSNQKFRDFKETFD-- 107 (997)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH--TTCEEEEEESCGGGHHHHHHHHHTTC---
T ss_pred HHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHcC--
Confidence 3444557899999999999887 78999999999999999999887754 457899999999999999999998753
Q ss_pred CceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHH-HcCCCCCe
Q 037446 181 QEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIREL-MSVPVQLR 259 (1165)
Q Consensus 181 ~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L-~~~~~~~r 259 (1165)
...+..++|+... ...++|+|+||++|.+.+......+.++++|||||||++.+. ++...+..+ ..++...+
T Consensus 108 ~~~v~~l~G~~~~------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~-~~g~~~e~ii~~l~~~v~ 180 (997)
T 4a4z_A 108 DVNIGLITGDVQI------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQ-DRGVVWEEVIIMLPQHVK 180 (997)
T ss_dssp -CCEEEECSSCEE------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTT-CTTCCHHHHHHHSCTTCE
T ss_pred CCeEEEEeCCCcc------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECccccccc-chHHHHHHHHHhcccCCC
Confidence 4567888887653 246899999999999998877777889999999999999875 333333333 34667789
Q ss_pred EEEEccCCCCChHHHHHHHHhhcccc-ccccCCchh-hhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhh
Q 037446 260 ILALTATPGSKQQTIQHIIDNLYIST-LEYRNESDQ-DVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337 (1165)
Q Consensus 260 iL~LSATP~~~~~~l~~Li~~L~is~-i~~~~~~~~-~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~ 337 (1165)
+|+||||+++..+ +...+....... ..+.....+ .+..++.........+....
T Consensus 181 iIlLSAT~~n~~e-f~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~----------------------- 236 (997)
T 4a4z_A 181 FILLSATVPNTYE-FANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNS----------------------- 236 (997)
T ss_dssp EEEEECCCTTHHH-HHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTC-----------------------
T ss_pred EEEEcCCCCChHH-HHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchh-----------------------
Confidence 9999999987653 433333211000 011110000 00000000000000000000
Q ss_pred cccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchH-HHHHHHHHHhhccchh
Q 037446 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRP-AYEMLEEKLKQGSFAR 416 (1165)
Q Consensus 338 ~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~-~~~~L~~~~~~~~~~~ 416 (1165)
.+....+......+......... ..+. ..+......+... ....-.. ...+....
T Consensus 237 ---------~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~---~~~~~~~~~~~~~~~~~rg~~-~~~~~~~~ 292 (997)
T 4a4z_A 237 ---------EFLEANFRKHKEILNGESAKGAP-----------SKTD---NGRGGSTARGGRGGSNTRDGR-GGRGNSTR 292 (997)
T ss_dssp ---------CBCHHHHHHHHHHHC--------------------------------------------------------
T ss_pred ---------hhhHHHHHHHHHHhhcccccccc-----------cccc---ccccccccccccccccccccc-cccccccc
Confidence 00000000000000000000000 0000 0000000000000 0000000 00000000
Q ss_pred cccch----hhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccce
Q 037446 417 FMSKN----EDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKAT 492 (1165)
Q Consensus 417 ll~~~----~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~ 492 (1165)
-.... .....................++..+++.|... ...++||||++++.|+.++..|...+ +...
T Consensus 293 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~------~~~~~IVF~~sr~~~e~la~~L~~~~--~~~~ 364 (997)
T 4a4z_A 293 GGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR------ELLPMVVFVFSKKRCEEYADWLEGIN--FCNN 364 (997)
T ss_dssp ------------------------CCCCTTHHHHHHHHHHHT------TCCSEEEECSCHHHHHHHHHTTTTCC--CCCH
T ss_pred cccccccccccccccccccccccccccchhHHHHHHHHHHhC------CCCCEEEEECCHHHHHHHHHHHhcCC--CCCH
Confidence 00000 000000000000111223456677788777653 45799999999999999999997765 2110
Q ss_pred -------------------------------eeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCC
Q 037446 493 -------------------------------EFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541 (1165)
Q Consensus 493 -------------------------------~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~v 541 (1165)
.+.+...+.+|++|++.+|..+++.|++|.++|||||+++++|||+|+
T Consensus 365 ~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~- 443 (997)
T 4a4z_A 365 KEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT- 443 (997)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-
T ss_pred HHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-
Confidence 011112345678999999999999999999999999999999999999
Q ss_pred CEEEEecc---------CCCHHHHHHHHhhcCCCC---CCccceec
Q 037446 542 DLVICFDA---------NVSPLRMIQRMGRTGRKH---DGRIPHIF 575 (1165)
Q Consensus 542 d~VI~~D~---------p~S~~~yiQriGRagR~G---qGkiv~v~ 575 (1165)
..||+++. |.|+..|+||+|||||.| .|.+++++
T Consensus 444 ~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 444 RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 55554444 449999999999999998 46666666
No 40
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=4e-33 Score=350.74 Aligned_cols=307 Identities=18% Similarity=0.238 Sum_probs=216.8
Q ss_pred CCChHHHHHHHHHhhc-------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCC
Q 037446 108 VPVRDYQFAITKTALF-------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIP 180 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~ 180 (1165)
++|+++|.+++..+.. .++|++++||+|||++|+++++..+.. +.+++|++||++|+.|+.+.+.++++..
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--g~qvlvlaPtr~La~Q~~~~l~~~~~~~ 444 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--GFQTAFMVPTSILAIQHYRRTVESFSKF 444 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--TSCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhhhc
Confidence 3678889998888775 389999999999999999999988764 4689999999999999999999998765
Q ss_pred CceEEEEeCCCChHHHHhh----cC-CccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCC
Q 037446 181 QEWTIDMTGQISPTKRASF----WK-TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVP 255 (1165)
Q Consensus 181 ~~~v~~l~G~~~~~~~~~l----~~-~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~ 255 (1165)
+..+..++|+.....+... .. .++|+|+||+.|.. .+.+.++++|||||||++... . ...+....
T Consensus 445 gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~--q---r~~l~~~~ 514 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVK--Q---REALMNKG 514 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----------CCCCSSS
T ss_pred CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHH--H---HHHHHHhC
Confidence 6778999999887665432 23 48999999998854 456788999999999998432 1 01222334
Q ss_pred CCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHh
Q 037446 256 VQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLS 335 (1165)
Q Consensus 256 ~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~ 335 (1165)
...++++|||||....-.+. ++. ......+. .....
T Consensus 515 ~~~~vL~mSATp~p~tl~~~-~~g----------------------~~~~s~i~-~~p~~-------------------- 550 (780)
T 1gm5_A 515 KMVDTLVMSATPIPRSMALA-FYG----------------------DLDVTVID-EMPPG-------------------- 550 (780)
T ss_dssp SCCCEEEEESSCCCHHHHHH-HTC----------------------CSSCEEEC-CCCSS--------------------
T ss_pred CCCCEEEEeCCCCHHHHHHH-HhC----------------------Ccceeeee-ccCCC--------------------
Confidence 56789999999965321100 000 00000000 00000
Q ss_pred hhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccch
Q 037446 336 AIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFA 415 (1165)
Q Consensus 336 ~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~ 415 (1165)
..+ +.
T Consensus 551 ------------r~~-----------------i~---------------------------------------------- 555 (780)
T 1gm5_A 551 ------------RKE-----------------VQ---------------------------------------------- 555 (780)
T ss_dssp ------------CCC-----------------CE----------------------------------------------
T ss_pred ------------Ccc-----------------eE----------------------------------------------
Confidence 000 00
Q ss_pred hcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchH--------HHHHHHHHHHh-cC
Q 037446 416 RFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRG--------SVRDIMNALAT-IG 486 (1165)
Q Consensus 416 ~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~--------~ae~L~~~L~~-~g 486 (1165)
.......+...+.+.+.+... .+.+++|||+..+ .++.+++.|.. ..
T Consensus 556 --------------------~~~~~~~~~~~l~~~i~~~l~----~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~ 611 (780)
T 1gm5_A 556 --------------------TMLVPMDRVNEVYEFVRQEVM----RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVF 611 (780)
T ss_dssp --------------------ECCCCSSTHHHHHHHHHHHTT----TSCCBCCBCCCC--------CHHHHHHHSGGGSCC
T ss_pred --------------------EEEeccchHHHHHHHHHHHHh----cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhc
Confidence 000001122334444544333 5789999999764 46667777765 21
Q ss_pred CCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCC-CHHHHHHHHhhcCC
Q 037446 487 DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANV-SPLRMIQRMGRTGR 565 (1165)
Q Consensus 487 ~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~-S~~~yiQriGRagR 565 (1165)
+.+. ++.+||+|++.+|.+++++|++|+++|||||+++++|||+|++++||++|+|. +...|.||+||+||
T Consensus 612 ~~~~--------v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR 683 (780)
T 1gm5_A 612 PEFK--------LGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGR 683 (780)
T ss_dssp ---C--------BCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCC
T ss_pred CCCc--------EEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCc
Confidence 1133 34556689999999999999999999999999999999999999999999995 78999999999999
Q ss_pred CC-CCccceecCh
Q 037446 566 KH-DGRIPHIFKP 577 (1165)
Q Consensus 566 ~G-qGkiv~v~~~ 577 (1165)
.| +|.+++++.+
T Consensus 684 ~g~~g~~ill~~~ 696 (780)
T 1gm5_A 684 GGQEAYCFLVVGD 696 (780)
T ss_dssp SSTTCEEECCCCS
T ss_pred CCCCCEEEEEECC
Confidence 99 5888887764
No 41
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.98 E-value=1.8e-31 Score=350.08 Aligned_cols=308 Identities=19% Similarity=0.188 Sum_probs=222.0
Q ss_pred CCCChHHHHHHHHHhhc-----C--CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCC
Q 037446 107 NVPVRDYQFAITKTALF-----S--NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGI 179 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~-----r--nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~ 179 (1165)
+++++++|.+++..++. + ++|++++||+|||++|+.+++..+. .++++||||||++|+.||.+++.++++.
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--~g~~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--NHKQVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--hCCeEEEEechHHHHHHHHHHHHHHhhc
Confidence 45789999999998875 3 7999999999999999988877654 4568999999999999999999998875
Q ss_pred CCceEEEEeCCCChHHHHh----hcC-CccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcC
Q 037446 180 PQEWTIDMTGQISPTKRAS----FWK-TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV 254 (1165)
Q Consensus 180 ~~~~v~~l~G~~~~~~~~~----l~~-~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~ 254 (1165)
....+..++|......+.. +.. .++|+|+||+.|. ..+.+.++++|||||||++.. .....++. +
T Consensus 679 ~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~g~--~~~~~l~~---l 748 (1151)
T 2eyq_A 679 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRFGV--RHKERIKA---M 748 (1151)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGSCH--HHHHHHHH---H
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhcCh--HHHHHHHH---h
Confidence 5667888888776654432 223 5899999998774 245678999999999999754 33333333 3
Q ss_pred CCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHH
Q 037446 255 PVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRL 334 (1165)
Q Consensus 255 ~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl 334 (1165)
....++|+|||||..... ...+..+ .....-.. + ......+......
T Consensus 749 ~~~~~vl~lSATp~p~~l--~~~~~~~--~~~~~i~~--~----~~~r~~i~~~~~~----------------------- 795 (1151)
T 2eyq_A 749 RANVDILTLTATPIPRTL--NMAMSGM--RDLSIIAT--P----PARRLAVKTFVRE----------------------- 795 (1151)
T ss_dssp HTTSEEEEEESSCCCHHH--HHHHTTT--SEEEECCC--C----CCBCBCEEEEEEE-----------------------
T ss_pred cCCCCEEEEcCCCChhhH--HHHHhcC--CCceEEec--C----CCCccccEEEEec-----------------------
Confidence 456789999999965421 1111100 00000000 0 0000000000000
Q ss_pred hhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccc
Q 037446 335 SAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSF 414 (1165)
Q Consensus 335 ~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~ 414 (1165)
T Consensus 796 -------------------------------------------------------------------------------- 795 (1151)
T 2eyq_A 796 -------------------------------------------------------------------------------- 795 (1151)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceee
Q 037446 415 ARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEF 494 (1165)
Q Consensus 415 ~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l 494 (1165)
..+ ..+.+.+...+. .+.+++|||++++.++.+++.|+...+.+++..+
T Consensus 796 --------------------------~~~-~~i~~~il~~l~----~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~l 844 (1151)
T 2eyq_A 796 --------------------------YDS-MVVREAILREIL----RGGQVYYLYNDVENIQKAAERLAELVPEARIAIG 844 (1151)
T ss_dssp --------------------------CCH-HHHHHHHHHHHT----TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEEC
T ss_pred --------------------------CCH-HHHHHHHHHHHh----cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 000 011111112111 4789999999999999999999987433566555
Q ss_pred ecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEecc-CCCHHHHHHHHhhcCCCC-CCccc
Q 037446 495 IGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDA-NVSPLRMIQRMGRTGRKH-DGRIP 572 (1165)
Q Consensus 495 ~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~-p~S~~~yiQriGRagR~G-qGkiv 572 (1165)
|| +|++.+|.+++++|++|+++|||||+++++|||+|++++||++++ +++...|+||+||+||.| +|.++
T Consensus 845 hg--------~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ 916 (1151)
T 2eyq_A 845 HG--------QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 916 (1151)
T ss_dssp CS--------SCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEE
T ss_pred eC--------CCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEE
Confidence 55 899999999999999999999999999999999999999999998 689999999999999999 58787
Q ss_pred eecChh
Q 037446 573 HIFKPE 578 (1165)
Q Consensus 573 ~v~~~d 578 (1165)
+++.++
T Consensus 917 ll~~~~ 922 (1151)
T 2eyq_A 917 LLTPHP 922 (1151)
T ss_dssp EEECCG
T ss_pred EEECCc
Confidence 777654
No 42
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.98 E-value=1.1e-31 Score=332.09 Aligned_cols=355 Identities=15% Similarity=0.138 Sum_probs=227.9
Q ss_pred HCCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhC
Q 037446 99 AKTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVG 178 (1165)
Q Consensus 99 ~~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g 178 (1165)
..|| .|+++| ..++..++..+ |+.++||+|||++|.+|++.... .+..++||+||++||.|..+++..++.
T Consensus 79 ~lG~-~pt~VQ-----~~~ip~ll~G~-Iaea~TGeGKTlaf~LP~~l~aL--~g~~vlVltptreLA~qd~e~~~~l~~ 149 (844)
T 1tf5_A 79 VTGM-FPFKVQ-----LMGGVALHDGN-IAEMKTGEGKTLTSTLPVYLNAL--TGKGVHVVTVNEYLASRDAEQMGKIFE 149 (844)
T ss_dssp HHSC-CCCHHH-----HHHHHHHHTTS-EEECCTTSCHHHHHHHHHHHHHT--TSSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHH-----HHhhHHHhCCC-EEEccCCcHHHHHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHHHHh
Confidence 4688 787776 44555555544 99999999999999999984322 355799999999999998888887766
Q ss_pred CCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHH-HHHHHc------CccCCCCccEEEEccccccc-Ccc--------
Q 037446 179 IPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL-EKDIQS------GTCLMKYLVCLVIDEAHRAT-GNY-------- 242 (1165)
Q Consensus 179 ~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L-~~~l~~------~~~~l~~~~lVVIDEAHrl~-~~~-------- 242 (1165)
..++.+..++|+.+...+... .+++|+|+||++| .+++.. +.+.+..+.++||||||+++ +..
T Consensus 150 ~lgl~v~~i~gg~~~~~r~~~-~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg 228 (844)
T 1tf5_A 150 FLGLTVGLNLNSMSKDEKREA-YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISG 228 (844)
T ss_dssp HTTCCEEECCTTSCHHHHHHH-HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEE
T ss_pred hcCCeEEEEeCCCCHHHHHHh-cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcC
Confidence 556779999999887655433 4789999999999 444432 24567889999999999997 321
Q ss_pred ------chHHHHHHHHc-CC---------CCCeEE-----------------EEccCCCCChHHHHHHHHh--hccc---
Q 037446 243 ------AYCTAIRELMS-VP---------VQLRIL-----------------ALTATPGSKQQTIQHIIDN--LYIS--- 284 (1165)
Q Consensus 243 ------~~~~~l~~L~~-~~---------~~~riL-----------------~LSATP~~~~~~l~~Li~~--L~is--- 284 (1165)
++...+..+.. ++ ..++++ ++|||...-...+.+.+.. +...
T Consensus 229 ~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~d 308 (844)
T 1tf5_A 229 QAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVD 308 (844)
T ss_dssp EEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTT
T ss_pred CcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCc
Confidence 25556666664 33 245665 7888853222223222211 1000
Q ss_pred ------------------------------------cccccCCch--------------hhhhhhhccCceEEEEeccch
Q 037446 285 ------------------------------------TLEYRNESD--------------QDVSSYVHNRKIELIEVEMGQ 314 (1165)
Q Consensus 285 ------------------------------------~i~~~~~~~--------------~~i~~y~~~~~~~~i~v~~~~ 314 (1165)
.+....+.. +.+....... ..
T Consensus 309 Yiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa---------~t 379 (844)
T 1tf5_A 309 YVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTA---------KT 379 (844)
T ss_dssp EEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCC---------GG
T ss_pred eEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCccc---------ch
Confidence 000000000 0000110000 00
Q ss_pred hHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHh
Q 037446 315 EAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLS 394 (1165)
Q Consensus 315 ~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~ 394 (1165)
+. ..+.+... ..+.. .|.+. +.+.. ..
T Consensus 380 e~----~e~~~iY~--------l~vv~-------IPtn~------------p~~r~-d~--------------------- 406 (844)
T 1tf5_A 380 EE----EEFRNIYN--------MQVVT-------IPTNR------------PVVRD-DR--------------------- 406 (844)
T ss_dssp GH----HHHHHHHC--------CCEEE-------CCCSS------------CCCCE-EC---------------------
T ss_pred hH----HHHHHHhC--------CceEE-------ecCCC------------Ccccc-cC---------------------
Confidence 00 01110000 00000 00000 00000 00
Q ss_pred hCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHH
Q 037446 395 SHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGS 474 (1165)
Q Consensus 395 ~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ 474 (1165)
..........|..+|++.+.+... .+.++||||++++.
T Consensus 407 --------------------------------------~d~v~~~~~~K~~al~~~i~~~~~----~~~pvLVft~s~~~ 444 (844)
T 1tf5_A 407 --------------------------------------PDLIYRTMEGKFKAVAEDVAQRYM----TGQPVLVGTVAVET 444 (844)
T ss_dssp --------------------------------------CCEEESSHHHHHHHHHHHHHHHHH----HTCCEEEEESCHHH
T ss_pred --------------------------------------CcEEEeCHHHHHHHHHHHHHHHHh----cCCcEEEEECCHHH
Confidence 000001123577888888765433 36789999999999
Q ss_pred HHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEccccccccccc--------CCCEEEE
Q 037446 475 VRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIM--------EVDLVIC 546 (1165)
Q Consensus 475 ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp--------~vd~VI~ 546 (1165)
++.|+..|...| +++..+|| ++.+.+|..+.++|+.| .|+|||++++||+||+ ++.+||+
T Consensus 445 se~Ls~~L~~~g--i~~~vLhg--------~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn 512 (844)
T 1tf5_A 445 SELISKLLKNKG--IPHQVLNA--------KNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG 512 (844)
T ss_dssp HHHHHHHHHTTT--CCCEEECS--------SCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE
T ss_pred HHHHHHHHHHCC--CCEEEeeC--------CccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEE
Confidence 999999999999 88888887 56677776555555554 6999999999999999 7889999
Q ss_pred eccCCCHHHHHHHHhhcCCCC-CCccceecChhH
Q 037446 547 FDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEV 579 (1165)
Q Consensus 547 ~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~ 579 (1165)
++.|.+...|+||+||+||.| +|..++++..++
T Consensus 513 ~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 513 TERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp SSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred ecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 999999999999999999999 588777766543
No 43
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=6.7e-32 Score=352.20 Aligned_cols=313 Identities=16% Similarity=0.170 Sum_probs=212.9
Q ss_pred HHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCc----eEEE
Q 037446 112 DYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQE----WTID 186 (1165)
Q Consensus 112 ~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~----~v~~ 186 (1165)
++|.+++..++. +++|++++||+|||+ |++|++..+.. .++++|||+||++|+.|+.+.+++++..... .+..
T Consensus 59 ~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~ 136 (1054)
T 1gku_B 59 AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGY 136 (1054)
T ss_dssp HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEE
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEE
Confidence 778888887776 799999999999998 88888776643 4578999999999999999999998865555 7888
Q ss_pred EeCCCChHHH----HhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCcc-chHHHHHHHHc--------
Q 037446 187 MTGQISPTKR----ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNY-AYCTAIRELMS-------- 253 (1165)
Q Consensus 187 l~G~~~~~~~----~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~-~~~~~l~~L~~-------- 253 (1165)
++|+.....+ ..+.. ++|+|+||++|.+.+.. +.++++|||||||++.+.. .+...+..+.-
T Consensus 137 ~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~~~ 211 (1054)
T 1gku_B 137 YHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKS 211 (1054)
T ss_dssp CCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTTTE
T ss_pred EeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhccccHHHHHHHhCcchhhhhhh
Confidence 9999886553 23334 99999999999987664 5689999999999998731 12222222210
Q ss_pred CCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHH
Q 037446 254 VPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSR 333 (1165)
Q Consensus 254 ~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~r 333 (1165)
.+...+++++|||+.........++..+.. +..... ......+...
T Consensus 212 ~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~--i~v~~~-------~~~~~~i~~~------------------------- 257 (1054)
T 1gku_B 212 WVGEARGCLMVSTATAKKGKKAELFRQLLN--FDIGSS-------RITVRNVEDV------------------------- 257 (1054)
T ss_dssp EEECCSSEEEECCCCSCCCTTHHHHHHHHC--CCCSCC-------EECCCCEEEE-------------------------
T ss_pred cccCCceEEEEecCCCchhHHHHHhhcceE--EEccCc-------ccCcCCceEE-------------------------
Confidence 134567899999986542211222211100 000000 0000000000
Q ss_pred HhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhcc
Q 037446 334 LSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGS 413 (1165)
Q Consensus 334 l~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~ 413 (1165)
T Consensus 258 -------------------------------------------------------------------------------- 257 (1054)
T 1gku_B 258 -------------------------------------------------------------------------------- 257 (1054)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCcccee
Q 037446 414 FARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATE 493 (1165)
Q Consensus 414 ~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~ 493 (1165)
. ....|...|.+++.. .+.++||||+++..|+.++..|+.. +++..
T Consensus 258 ---------------------~---~~~~k~~~L~~ll~~-------~~~~~LVF~~t~~~a~~l~~~L~~~---~~v~~ 303 (1054)
T 1gku_B 258 ---------------------A---VNDESISTLSSILEK-------LGTGGIIYARTGEEAEEIYESLKNK---FRIGI 303 (1054)
T ss_dssp ---------------------E---ESCCCTTTTHHHHTT-------SCSCEEEEESSHHHHHHHHHTTTTS---SCEEE
T ss_pred ---------------------E---echhHHHHHHHHHhh-------cCCCEEEEEcCHHHHHHHHHHHhhc---cCeeE
Confidence 0 001233334444432 1568999999999999999999765 56666
Q ss_pred eecccccccCCCCCHHHHHHHHHHHhcCCceEEEE----cccccccccccCC-CEEEEeccC------------------
Q 037446 494 FIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVA----TSIGEEGLDIMEV-DLVICFDAN------------------ 550 (1165)
Q Consensus 494 l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVA----Tda~~eGLDIp~v-d~VI~~D~p------------------ 550 (1165)
+|| ++ ..++++|++|+.+|||| |+++++|||+|+| ++||++|.|
T Consensus 304 lhg--------~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~ 370 (1054)
T 1gku_B 304 VTA--------TK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVK 370 (1054)
T ss_dssp CTT--------SS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHH
T ss_pred Eec--------cH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHH
Confidence 665 45 47899999999999999 9999999999996 999999999
Q ss_pred -----------------------------------------------------CCHHHHHHHHhhcCCCCCC---cccee
Q 037446 551 -----------------------------------------------------VSPLRMIQRMGRTGRKHDG---RIPHI 574 (1165)
Q Consensus 551 -----------------------------------------------------~S~~~yiQriGRagR~GqG---kiv~v 574 (1165)
.+...|+||+||+||.|.| +.+.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~ 450 (1054)
T 1gku_B 371 LLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASF 450 (1054)
T ss_dssp HHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEE
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEE
Confidence 7999999999999998754 23333
Q ss_pred cChhHHHHHHHHHHHHhc
Q 037446 575 FKPEVQFVELSIEQYVSR 592 (1165)
Q Consensus 575 ~~~d~~~~~~~Ie~~l~~ 592 (1165)
+..++......+++.+..
T Consensus 451 ~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 451 LLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EECSCHHHHHHHHHHHHT
T ss_pred EEecCHHHHHHHHHHHhh
Confidence 333334444567766654
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=3e-31 Score=357.32 Aligned_cols=359 Identities=17% Similarity=0.218 Sum_probs=245.0
Q ss_pred cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc--CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhH
Q 037446 88 SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF--SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPL 165 (1165)
Q Consensus 88 ~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~--rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~L 165 (1165)
.|.....+++...+|.+ +++.|.+++..+.. +|+++++|||+|||++|.++|++.+...+++++|||+|+++|
T Consensus 910 ~L~~~~~e~l~~~~f~~-----fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raL 984 (1724)
T 4f92_B 910 ALRNSAFESLYQDKFPF-----FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEAL 984 (1724)
T ss_dssp GSCCHHHHTTTTTTCSB-----CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHH
T ss_pred cccCHHHHHHHHhcCCC-----CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHH
Confidence 56677778887777765 66778889998875 789999999999999999999999988888899999999999
Q ss_pred HHHHHHHHHHHhCC-CCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCc--cCCCCccEEEEcccccccCcc
Q 037446 166 VMQQIEACHNIVGI-PQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT--CLMKYLVCLVIDEAHRATGNY 242 (1165)
Q Consensus 166 a~Q~~~e~~kl~g~-~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~--~~l~~~~lVVIDEAHrl~~~~ 242 (1165)
+.|..+++.+.++. .+..+..++|+.....+ ...+++|+|+||+++..++.++. ..+.++++|||||+|.+.+..
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~--~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~r 1062 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK--LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGEN 1062 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH--HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTT
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcchh--hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCC
Confidence 99999999877653 45678888998664433 33568999999999987776533 236789999999999997642
Q ss_pred c--hHHHHHHHH----cCCCCCeEEEEccCCCCChHHHHHHHHhhccccc---cccCCchhhhhhhhccCceEEEE-ecc
Q 037446 243 A--YCTAIRELM----SVPVQLRILALTATPGSKQQTIQHIIDNLYISTL---EYRNESDQDVSSYVHNRKIELIE-VEM 312 (1165)
Q Consensus 243 ~--~~~~l~~L~----~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i---~~~~~~~~~i~~y~~~~~~~~i~-v~~ 312 (1165)
+ +...+.++. ....+.|+|+||||.++.. ++.+ .|..... .+.....+ -+....+. ...
T Consensus 1063 g~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~-dla~---WL~~~~~~~~~~~~~~RP-------vpL~~~i~~~~~ 1131 (1724)
T 4f92_B 1063 GPVLEVICSRMRYISSQIERPIRIVALSSSLSNAK-DVAH---WLGCSATSTFNFHPNVRP-------VPLELHIQGFNI 1131 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHH-HHHH---HHTCCSTTEEECCGGGCS-------SCEEEEEEEECC
T ss_pred CccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHH-HHHH---HhCCCCCCeEEeCCCCCC-------CCeEEEEEeccC
Confidence 2 223333332 3567789999999987642 2332 2221110 01000000 00000000 000
Q ss_pred chhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 037446 313 GQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRL 392 (1165)
Q Consensus 313 ~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~l 392 (1165)
....
T Consensus 1132 ~~~~---------------------------------------------------------------------------- 1135 (1724)
T 4f92_B 1132 SHTQ---------------------------------------------------------------------------- 1135 (1724)
T ss_dssp CSHH----------------------------------------------------------------------------
T ss_pred CCch----------------------------------------------------------------------------
Confidence 0000
Q ss_pred HhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCch
Q 037446 393 LSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFR 472 (1165)
Q Consensus 393 l~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr 472 (1165)
..+ . .....+...+.++ ..+.++||||+++
T Consensus 1136 ----------~~~------------~-----------------------~~~~~~~~~i~~~-----~~~~~~lVF~~sR 1165 (1724)
T 4f92_B 1136 ----------TRL------------L-----------------------SMAKPVYHAITKH-----SPKKPVIVFVPSR 1165 (1724)
T ss_dssp ----------HHH------------H-----------------------TTHHHHHHHHHHH-----CSSSCEEEEESSH
T ss_pred ----------hhh------------h-----------------------hhcchHHHHHHHh-----cCCCCeeeeCCCH
Confidence 000 0 0001122223232 1467999999999
Q ss_pred HHHHHHHHHHHhc----CCCccc--------------------eeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEE
Q 037446 473 GSVRDIMNALATI----GDLVKA--------------------TEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVA 528 (1165)
Q Consensus 473 ~~ae~L~~~L~~~----g~~i~~--------------------~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVA 528 (1165)
..|+.++..|... ...-.. ......+++.+|+||++.+|..+.+.|++|.++||||
T Consensus 1166 ~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLva 1245 (1724)
T 4f92_B 1166 KQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVA 1245 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEE
T ss_pred HHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEE
Confidence 9999888777432 100000 0011223457899999999999999999999999999
Q ss_pred cccccccccccCCCEEEE----ec------cCCCHHHHHHHHhhcCCCC---CCccceecChhHHHHHHHHHHHHhcC
Q 037446 529 TSIGEEGLDIMEVDLVIC----FD------ANVSPLRMIQRMGRTGRKH---DGRIPHIFKPEVQFVELSIEQYVSRG 593 (1165)
Q Consensus 529 Tda~~eGLDIp~vd~VI~----~D------~p~S~~~yiQriGRagR~G---qGkiv~v~~~d~~~~~~~Ie~~l~~~ 593 (1165)
|+.+++|||+|+..+||. || .|.++..|+||+|||||.| .|.+++++.+... ..+++++...
T Consensus 1246 T~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~---~~~~~ll~~~ 1320 (1724)
T 4f92_B 1246 SRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKK---DFFKKFLYEP 1320 (1724)
T ss_dssp EGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGH---HHHHHHTTSC
T ss_pred ChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHH---HHHHHHhCCC
Confidence 999999999999999984 33 3689999999999999999 4778888876654 2344555433
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=4.6e-31 Score=355.60 Aligned_cols=336 Identities=18% Similarity=0.271 Sum_probs=223.7
Q ss_pred CChHHHHHHHHHhhc--CCeEEEcCCCchHHHHHHHHHHHHHHhC---------CCCeEEEEecChhHHHHHHHHHHHHh
Q 037446 109 PVRDYQFAITKTALF--SNTLVALPTGLGKTLIAAVVIYNFFRWF---------PDGKIVFAAPSRPLVMQQIEACHNIV 177 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~--rnvIl~a~TGsGKTL~a~lpil~~L~~~---------~~~rvLILvPtr~La~Q~~~e~~kl~ 177 (1165)
.++++|.+++..++. +|+||++|||+|||++|.++|+..+... .+.++|||+|+++|+.|..+.|.+.+
T Consensus 79 ~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~ 158 (1724)
T 4f92_B 79 TLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRL 158 (1724)
T ss_dssp BCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHH
Confidence 477788889988875 7899999999999999999999888542 34589999999999999999999988
Q ss_pred CCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCc--cCCCCccEEEEcccccccCccch--HHHHHHHH-
Q 037446 178 GIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGT--CLMKYLVCLVIDEAHRATGNYAY--CTAIRELM- 252 (1165)
Q Consensus 178 g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~--~~l~~~~lVVIDEAHrl~~~~~~--~~~l~~L~- 252 (1165)
+..+..+..++|+.....+ .+..++|+|+|||++..++.++. ..+.++++|||||+|.+.+..+. ...+.+++
T Consensus 159 ~~~gi~V~~~tGd~~~~~~--~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~ 236 (1724)
T 4f92_B 159 ATYGITVAELTGDHQLCKE--EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIR 236 (1724)
T ss_dssp TTTTCCEEECCSSCSSCCT--TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHH
T ss_pred hhCCCEEEEEECCCCCCcc--ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHH
Confidence 7777889999999875432 23578999999999977665432 23678999999999988653222 22233322
Q ss_pred ---cCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhh
Q 037446 253 ---SVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRP 329 (1165)
Q Consensus 253 ---~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~ 329 (1165)
....+.|+||||||.++. + ++..+|...... ....+..
T Consensus 237 ~~~~~~~~~riI~LSATl~N~-~---dvA~wL~~~~~~------------------~~~~~~~----------------- 277 (1724)
T 4f92_B 237 NIEMTQEDVRLIGLSATLPNY-E---DVATFLRVDPAK------------------GLFYFDN----------------- 277 (1724)
T ss_dssp HHHHHTCCCEEEEEECSCTTH-H---HHHHHTTCCHHH------------------HEEECCG-----------------
T ss_pred HHHhCCCCCcEEEEecccCCH-H---HHHHHhCCCCCC------------------CeEEECC-----------------
Confidence 346778999999998763 2 232222211000 0000000
Q ss_pred HHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHH
Q 037446 330 YTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKL 409 (1165)
Q Consensus 330 ~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~ 409 (1165)
++ .|..+ ...+.. .. ..... ...
T Consensus 278 --------------~~---RPvpL---~~~~~~-----~~--~~~~~--------------------------~~~---- 300 (1724)
T 4f92_B 278 --------------SF---RPVPL---EQTYVG-----IT--EKKAI--------------------------KRF---- 300 (1724)
T ss_dssp --------------GG---CSSCE---EEECCE-----EC--CCCHH--------------------------HHH----
T ss_pred --------------CC---ccCcc---EEEEec-----cC--Ccchh--------------------------hhh----
Confidence 00 00000 000000 00 00000 000
Q ss_pred hhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcC---
Q 037446 410 KQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG--- 486 (1165)
Q Consensus 410 ~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g--- 486 (1165)
... -..+.+.+.+ ...+.++||||++|+.|+.+++.|.+..
T Consensus 301 ---------------~~~----------------~~~~~~~v~~-----~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~ 344 (1724)
T 4f92_B 301 ---------------QIM----------------NEIVYEKIME-----HAGKNQVLVFVHSRKETGKTARAIRDMCLEK 344 (1724)
T ss_dssp ---------------HHH----------------HHHHHHHHTT-----CCSSCCEEEECSSTTTTHHHHHHHHHHHHHT
T ss_pred ---------------HHH----------------HHHHHHHHHH-----HhcCCcEEEECCCHHHHHHHHHHHHHHHhhc
Confidence 000 0011122222 2246789999999999998888886431
Q ss_pred -CC---cc--------------------ceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCC
Q 037446 487 -DL---VK--------------------ATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVD 542 (1165)
Q Consensus 487 -~~---i~--------------------~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd 542 (1165)
.. .. ...+...+.+.+|+||++.+|..+.+.|++|.++|||||+.++.|||+|+.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~ 424 (1724)
T 4f92_B 345 DTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHT 424 (1724)
T ss_dssp TSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSE
T ss_pred cchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCce
Confidence 00 00 0001122245689999999999999999999999999999999999999999
Q ss_pred EEEE----ecc------CCCHHHHHHHHhhcCCCC---CCccceecChh
Q 037446 543 LVIC----FDA------NVSPLRMIQRMGRTGRKH---DGRIPHIFKPE 578 (1165)
Q Consensus 543 ~VI~----~D~------p~S~~~yiQriGRagR~G---qGkiv~v~~~d 578 (1165)
+||. |++ |.++..|.||+|||||.| .|..++++..+
T Consensus 425 vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~ 473 (1724)
T 4f92_B 425 VIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHG 473 (1724)
T ss_dssp EEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEEST
T ss_pred EEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecch
Confidence 9995 554 579999999999999998 36666666543
No 46
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.97 E-value=5.7e-31 Score=314.94 Aligned_cols=283 Identities=18% Similarity=0.154 Sum_probs=194.6
Q ss_pred CCCCCCCCCChHHHHHHHHHhhcCCe-EEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCC
Q 037446 101 TWIYPVNVPVRDYQFAITKTALFSNT-LVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGI 179 (1165)
Q Consensus 101 g~~~Pt~IQlr~yQ~eal~~ll~rnv-Il~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~ 179 (1165)
|+..|+++| + .+...+.++++ |++++||||||++|++|++..+.. .+.++||++||++|+.|+.+.+. |.
T Consensus 1 G~~q~~~iq----~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~---g~ 71 (451)
T 2jlq_A 1 GSAMGEPDY----E-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-RRLRTLILAPTRVVAAEMEEALR---GL 71 (451)
T ss_dssp CCCCCSCCC----C-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT---TS
T ss_pred CCCCCCCcH----H-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-cCCcEEEECCCHHHHHHHHHHhc---Cc
Confidence 577888887 3 34344444666 888999999999999998876543 35789999999999999998875 22
Q ss_pred CCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHH--HcCCCC
Q 037446 180 PQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIREL--MSVPVQ 257 (1165)
Q Consensus 180 ~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L--~~~~~~ 257 (1165)
. +....+.... ....+..|.++|++.|.+.+... ..+.++++|||||||++ +. .+...+..+ ......
T Consensus 72 ~---v~~~~~~~~~----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~-~~~~~~~~~~~~~~~~~ 141 (451)
T 2jlq_A 72 P---IRYQTPAVKS----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DP-CSVAARGYISTRVEMGE 141 (451)
T ss_dssp C---EEECCTTCSC----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SH-HHHHHHHHHHHHHHTTS
T ss_pred e---eeeeeccccc----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-Cc-chHHHHHHHHHhhcCCC
Confidence 1 2111111110 12245679999999998877643 45788999999999988 21 222222111 123456
Q ss_pred CeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhh
Q 037446 258 LRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAI 337 (1165)
Q Consensus 258 ~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~ 337 (1165)
.++++|||||+..... .+..... .+.+...
T Consensus 142 ~~~i~~SAT~~~~~~~------------------------~~~~~~~--~~~~~~~------------------------ 171 (451)
T 2jlq_A 142 AAAIFMTATPPGSTDP------------------------FPQSNSP--IEDIERE------------------------ 171 (451)
T ss_dssp CEEEEECSSCTTCCCS------------------------SCCCSSC--EEEEECC------------------------
T ss_pred ceEEEEccCCCccchh------------------------hhcCCCc--eEecCcc------------------------
Confidence 8999999999653210 0000000 0110000
Q ss_pred cccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhc
Q 037446 338 GLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARF 417 (1165)
Q Consensus 338 ~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~l 417 (1165)
.| ... +
T Consensus 172 -----------~p-------------------~~~-----------------------------------------~--- 177 (451)
T 2jlq_A 172 -----------IP-------------------ERS-----------------------------------------W--- 177 (451)
T ss_dssp -----------CC-------------------SSC-----------------------------------------C---
T ss_pred -----------CC-------------------chh-----------------------------------------h---
Confidence 00 000 0
Q ss_pred ccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecc
Q 037446 418 MSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQ 497 (1165)
Q Consensus 418 l~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~ 497 (1165)
..+.+.+.+ ...++||||++++.++.+++.|...| +.+..+||
T Consensus 178 ---------------------------~~~~~~l~~-------~~~~~lVF~~s~~~a~~l~~~L~~~g--~~~~~lh~- 220 (451)
T 2jlq_A 178 ---------------------------NTGFDWITD-------YQGKTVWFVPSIKAGNDIANCLRKSG--KRVIQLSR- 220 (451)
T ss_dssp ---------------------------SSSCHHHHH-------CCSCEEEECSSHHHHHHHHHHHHTTT--CCEEEECT-
T ss_pred ---------------------------HHHHHHHHh-------CCCCEEEEcCCHHHHHHHHHHHHHcC--CeEEECCH-
Confidence 000111222 24589999999999999999999988 77777776
Q ss_pred cccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEec--------------------cCCCHHHHH
Q 037446 498 SSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFD--------------------ANVSPLRMI 557 (1165)
Q Consensus 498 ~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D--------------------~p~S~~~yi 557 (1165)
. .+.++++.|++|+.+|||||+++++|||+|+ ++||++| .|.+...|+
T Consensus 221 -------~----~~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~ 288 (451)
T 2jlq_A 221 -------K----TFDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAA 288 (451)
T ss_dssp -------T----THHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHH
T ss_pred -------H----HHHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHH
Confidence 2 2467999999999999999999999999999 9999998 999999999
Q ss_pred HHHhhcCCCC--CCccceec
Q 037446 558 QRMGRTGRKH--DGRIPHIF 575 (1165)
Q Consensus 558 QriGRagR~G--qGkiv~v~ 575 (1165)
||+||+||.| +|.+++++
T Consensus 289 Qr~GRaGR~g~~~g~~~~~~ 308 (451)
T 2jlq_A 289 QRRGRIGRNPAQEDDQYVFS 308 (451)
T ss_dssp HHHTTSSCCTTCCCEEEEEC
T ss_pred HhccccCCCCCCCccEEEEe
Confidence 9999999999 45565555
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.97 E-value=2.2e-30 Score=327.58 Aligned_cols=335 Identities=16% Similarity=0.239 Sum_probs=229.7
Q ss_pred CCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHH---hCCCCeE
Q 037446 82 GSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFR---WFPDGKI 156 (1165)
Q Consensus 82 ~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~---~~~~~rv 156 (1165)
..+|++ ++++.+.+.+...+ ..|+.+| |.+++..+.+ +++++.++||+|||++ +|++.... ...+.++
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q----~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~~~g~~i 143 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQ----RDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMPHLENTQV 143 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGG----HHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCGGGGTCEE
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHH----HHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhccccCCCceE
Confidence 357888 99999999999888 7888888 8888888776 5699999999999994 44432211 1124579
Q ss_pred EEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccc
Q 037446 157 VFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAH 236 (1165)
Q Consensus 157 LILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAH 236 (1165)
+|++|+++|+.|+.+.+...++......+.+..... .......+|+|+||+++.+.+... ..+.++++|||||||
T Consensus 144 lvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~----~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah 218 (773)
T 2xau_A 144 ACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFE----NKTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAH 218 (773)
T ss_dssp EEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTE----EECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGG
T ss_pred EecCchHHHHHHHHHHHHHHhCCchhheecceeccc----cccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCcc
Confidence 999999999999999887776643211111110000 111246799999999999877653 457889999999999
Q ss_pred c-ccCccchHHHHHHHHcCCCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchh
Q 037446 237 R-ATGNYAYCTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQE 315 (1165)
Q Consensus 237 r-l~~~~~~~~~l~~L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~ 315 (1165)
. ..+.......++.+.......++++||||+.. +.+..++.. .. .+.+....
T Consensus 219 ~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~--~~l~~~~~~----------------------~~--vi~v~gr~- 271 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA--EKFQRYFND----------------------AP--LLAVPGRT- 271 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC--HHHHHHTTS----------------------CC--EEECCCCC-
T ss_pred ccccchHHHHHHHHHHHHhCCCceEEEEeccccH--HHHHHHhcC----------------------CC--cccccCcc-
Confidence 5 54432344556666655567899999999942 333333211 00 01100000
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhh
Q 037446 316 AVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSS 395 (1165)
Q Consensus 316 ~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~ 395 (1165)
+ |.. ..|..
T Consensus 272 -----------------------------~----pv~-----~~~~~--------------------------------- 280 (773)
T 2xau_A 272 -----------------------------Y----PVE-----LYYTP--------------------------------- 280 (773)
T ss_dssp -----------------------------C----CEE-----EECCS---------------------------------
T ss_pred -----------------------------c----ceE-----EEEec---------------------------------
Confidence 0 000 00000
Q ss_pred CCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHH
Q 037446 396 HGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSV 475 (1165)
Q Consensus 396 ~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~a 475 (1165)
.....++..++..+.+... ...+.++||||++++.+
T Consensus 281 ------------------------------------------~~~~~~~~~~l~~l~~~~~--~~~~g~iLVF~~~~~~i 316 (773)
T 2xau_A 281 ------------------------------------------EFQRDYLDSAIRTVLQIHA--TEEAGDILLFLTGEDEI 316 (773)
T ss_dssp ------------------------------------------SCCSCHHHHHHHHHHHHHH--HSCSCEEEEECSCHHHH
T ss_pred ------------------------------------------CCchhHHHHHHHHHHHHHH--hcCCCCEEEECCCHHHH
Confidence 0000111111222222211 11367999999999999
Q ss_pred HHHHHHHHhc---------CCCccceeeecccccccCCCCCHHHHHHHHHHHh-----cCCceEEEEcccccccccccCC
Q 037446 476 RDIMNALATI---------GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR-----AGGYNVIVATSIGEEGLDIMEV 541 (1165)
Q Consensus 476 e~L~~~L~~~---------g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr-----~g~~~VLVATda~~eGLDIp~v 541 (1165)
+.++..|... ...+.+..+| ++|++++|..+++.|+ +|..+|||||+++++|||||++
T Consensus 317 ~~l~~~L~~~~~~l~~~~~~~~~~v~~lh--------g~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v 388 (773)
T 2xau_A 317 EDAVRKISLEGDQLVREEGCGPLSVYPLY--------GSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGI 388 (773)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCEEEEEEC--------TTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTE
T ss_pred HHHHHHHHHHHHhhcccccCCCeEEEEeC--------CCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCe
Confidence 9999999751 1114555555 4899999999999999 9999999999999999999999
Q ss_pred CEEEEecc------------------CCCHHHHHHHHhhcCCCCCCccceecChh
Q 037446 542 DLVICFDA------------------NVSPLRMIQRMGRTGRKHDGRIPHIFKPE 578 (1165)
Q Consensus 542 d~VI~~D~------------------p~S~~~yiQriGRagR~GqGkiv~v~~~d 578 (1165)
++||+++. |.|...|+||+|||||.+.|.++.++.++
T Consensus 389 ~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~ 443 (773)
T 2xau_A 389 VYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEE 443 (773)
T ss_dssp EEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHH
T ss_pred EEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHH
Confidence 99999877 89999999999999999889998888754
No 48
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.97 E-value=7.4e-30 Score=314.77 Aligned_cols=128 Identities=13% Similarity=-0.001 Sum_probs=101.1
Q ss_pred CChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEe
Q 037446 109 PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMT 188 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~ 188 (1165)
.+.+.|..+...++..+ |+.++||+|||++|++|++.... .+..++||+||++||.|..+.+..++...++.+..++
T Consensus 74 ~p~~VQ~~~i~~ll~G~-Iaem~TGsGKTlaf~LP~l~~~l--~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~ 150 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNERC-IAEMRTGEGKTLTATLPAYLNAL--TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINL 150 (853)
T ss_dssp CCCHHHHHHHHHHHSSE-EEECCTTSCHHHHHHHHHHHHHT--TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred CCChHHHhhcccccCCe-eeeecCCchHHHHHHHHHHHHHH--cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 44455566666666655 99999999999999999985433 3457999999999999999888887765567799999
Q ss_pred CCCChHHHHhhcCCccEEEEcHHHH-HHHHHcC------ccCCCCccEEEEcccccccC
Q 037446 189 GQISPTKRASFWKTKRVFFVTPQVL-EKDIQSG------TCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 189 G~~~~~~~~~l~~~~dIlVaTpq~L-~~~l~~~------~~~l~~~~lVVIDEAHrl~~ 240 (1165)
|+.+...+.. ..+++|+|+||++| .+++..+ .+.+.++.++||||||+++.
T Consensus 151 GG~~~~~r~~-~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLi 208 (853)
T 2fsf_A 151 PGMPAPAKRE-AYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILI 208 (853)
T ss_dssp TTCCHHHHHH-HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTT
T ss_pred CCCCHHHHHH-hcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHH
Confidence 9988754433 34689999999999 5666543 35678899999999999983
No 49
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.97 E-value=2.6e-30 Score=319.33 Aligned_cols=309 Identities=17% Similarity=0.110 Sum_probs=211.3
Q ss_pred CCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHH
Q 037446 89 LCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167 (1165)
Q Consensus 89 L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~ 167 (1165)
+++.+++++... ...|+++| |.+ +..++. +++|++++||||||++|++|+++.+.. .+.++|||+||++|+.
T Consensus 157 ~~~~~~~~l~~~-~~~~lpiq----~~~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-~~~~vLvl~PtreLa~ 229 (618)
T 2whx_A 157 KSGDYVSAITQA-ERIGEPDY----EVD-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-RRLRTLILAPTRVVAA 229 (618)
T ss_dssp -----CEECBCC-CCCCCCCC----CCC-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHH
T ss_pred chHHHHHHHhhc-cccCCCcc----ccC-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEcChHHHHH
Confidence 555555544432 47788887 333 555544 899999999999999999999887654 4568999999999999
Q ss_pred HHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHH
Q 037446 168 QQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTA 247 (1165)
Q Consensus 168 Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~ 247 (1165)
|+.+.+.. . .+. +.+..-. .....+..+.++|.+.+...+... ..+.++++|||||||++ + .++...
T Consensus 230 Qi~~~l~~---~---~v~-~~~~~l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~-~~~~~~ 296 (618)
T 2whx_A 230 EMEEALRG---L---PIR-YQTPAVK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-D-PCSVAA 296 (618)
T ss_dssp HHHHHTTT---S---CEE-ECCTTSS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-S-HHHHHH
T ss_pred HHHHHhcC---C---cee-Eecccce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-C-ccHHHH
Confidence 99988762 2 122 2222100 011234567788999888766543 45788999999999998 3 255545
Q ss_pred HHHHHcC--CCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHH
Q 037446 248 IRELMSV--PVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWE 325 (1165)
Q Consensus 248 l~~L~~~--~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~ 325 (1165)
+..+... ....++++||||++..... +.. .....+.+...
T Consensus 297 ~~~i~~~l~~~~~q~il~SAT~~~~~~~-------------------------~~~-~~~~~~~v~~~------------ 338 (618)
T 2whx_A 297 RGYISTRVEMGEAAAIFMTATPPGSTDP-------------------------FPQ-SNSPIEDIERE------------ 338 (618)
T ss_dssp HHHHHHHHHHTSCEEEEECSSCTTCCCS-------------------------SCC-CSSCEEEEECC------------
T ss_pred HHHHHHHhcccCccEEEEECCCchhhhh-------------------------hhc-cCCceeeeccc------------
Confidence 5444432 2567999999999654210 000 00011111100
Q ss_pred HHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHH
Q 037446 326 VIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEML 405 (1165)
Q Consensus 326 ~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L 405 (1165)
+ +
T Consensus 339 -------------------~----~------------------------------------------------------- 340 (618)
T 2whx_A 339 -------------------I----P------------------------------------------------------- 340 (618)
T ss_dssp -------------------C----C-------------------------------------------------------
T ss_pred -------------------C----C-------------------------------------------------------
Confidence 0 0
Q ss_pred HHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhc
Q 037446 406 EEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI 485 (1165)
Q Consensus 406 ~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~ 485 (1165)
..++..+++.|.+ ...++||||++++.++.+++.|...
T Consensus 341 -----------------------------------~~~~~~ll~~l~~-------~~~~~LVF~~s~~~a~~l~~~L~~~ 378 (618)
T 2whx_A 341 -----------------------------------ERSWNTGFDWITD-------YQGKTVWFVPSIKAGNDIANCLRKS 378 (618)
T ss_dssp -----------------------------------SSCCSSSCHHHHH-------CCSCEEEECSSHHHHHHHHHHHHHT
T ss_pred -----------------------------------HHHHHHHHHHHHh-------CCCCEEEEECChhHHHHHHHHHHHc
Confidence 0000011222222 2569999999999999999999998
Q ss_pred CCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEE--------------------E
Q 037446 486 GDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLV--------------------I 545 (1165)
Q Consensus 486 g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~V--------------------I 545 (1165)
+ +++..+|| ++|.+++++|++|+.+|||||+++++|||+| +++| |
T Consensus 379 g--~~v~~lhg------------~~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i 443 (618)
T 2whx_A 379 G--KRVIQLSR------------KTFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVIL 443 (618)
T ss_dssp T--CCEEEECT------------TTHHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEE
T ss_pred C--CcEEEECh------------HHHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEE
Confidence 8 88888876 2688899999999999999999999999997 9888 8
Q ss_pred EeccCCCHHHHHHHHhhcCCCC--CCccceecC---hhHHHHHHHHHHHH
Q 037446 546 CFDANVSPLRMIQRMGRTGRKH--DGRIPHIFK---PEVQFVELSIEQYV 590 (1165)
Q Consensus 546 ~~D~p~S~~~yiQriGRagR~G--qGkiv~v~~---~d~~~~~~~Ie~~l 590 (1165)
++|.|.+...|+||+||+||.| +|.+++++. +++......+++.+
T Consensus 444 ~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 444 AGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred cccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 8888999999999999999997 577777775 44433444555554
No 50
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.96 E-value=1.7e-28 Score=302.90 Aligned_cols=394 Identities=14% Similarity=0.136 Sum_probs=228.3
Q ss_pred CCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCC
Q 037446 100 KTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGI 179 (1165)
Q Consensus 100 ~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~ 179 (1165)
.|+ .|+++| ..++..++..+ |+.++||+|||++|.+|++.... .+..++||+||+.||.|..+.+..++..
T Consensus 108 lG~-rP~~VQ-----~~~ip~Ll~G~-Iaem~TGeGKTLa~~LP~~l~aL--~g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 108 LDQ-RPFDVQ-----VMGAAALHLGN-VAEMKTGEGKTLTCVLPAYLNAL--AGNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp HSC-CCCHHH-----HHHHHHHHTTE-EEECCTTSCHHHHTHHHHHHHHT--TTSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHH-----HHHHHhHhcCC-EEEecCCCccHHHHHHHHHHHHH--hCCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 465 666555 55555565544 99999999999999999964332 3457999999999999988888777665
Q ss_pred CCceEEEEeCCCChHHHHhhcCCccEEEEcHHHH-HHHHHcC------ccCCCCccEEEEcccccccCcc----------
Q 037446 180 PQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL-EKDIQSG------TCLMKYLVCLVIDEAHRATGNY---------- 242 (1165)
Q Consensus 180 ~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L-~~~l~~~------~~~l~~~~lVVIDEAHrl~~~~---------- 242 (1165)
.++.+..+.|+.+...+... .+++|+|+||+.| .+++... .+.+..+.++||||||+++.+.
T Consensus 179 lGLsv~~i~gg~~~~~r~~~-y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~ 257 (922)
T 1nkt_A 179 LGLQVGVILATMTPDERRVA-YNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGP 257 (922)
T ss_dssp TTCCEEECCTTCCHHHHHHH-HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEE
T ss_pred cCCeEEEEeCCCCHHHHHHh-cCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCC
Confidence 56779999999887655433 4689999999999 5555432 4567889999999999998421
Q ss_pred -----chHHHHHHHHc-CC---------CCCeEE-----------------EEccCCCCChHHHHHHHHh--hccccccc
Q 037446 243 -----AYCTAIRELMS-VP---------VQLRIL-----------------ALTATPGSKQQTIQHIIDN--LYISTLEY 288 (1165)
Q Consensus 243 -----~~~~~l~~L~~-~~---------~~~riL-----------------~LSATP~~~~~~l~~Li~~--L~is~i~~ 288 (1165)
++...+..+.. ++ +.++++ ++|||...-...+.+.+.. +.....
T Consensus 258 ~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~-- 335 (922)
T 1nkt_A 258 ADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDK-- 335 (922)
T ss_dssp CCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTT--
T ss_pred CCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccc--
Confidence 34445555543 44 445554 4444433211112111110 000000
Q ss_pred cCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCC
Q 037446 289 RNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNL 368 (1165)
Q Consensus 289 ~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i 368 (1165)
.|+-... +++.+.-- ..++ +..+.|..- ..+...++..+. +
T Consensus 336 ---------dYiV~dg-~vviVDe~-----------------TGR~-----m~grr~sdG-LHQaieaKe~V~------I 376 (922)
T 1nkt_A 336 ---------DYIVRDG-EVLIVDEF-----------------TGRV-----LIGRRYNEG-MHQAIEAKEHVE------I 376 (922)
T ss_dssp ---------TEEECSS-CEEEBCSS-----------------SCCB-----CTTCCCSTT-HHHHHHHHTTCC------C
T ss_pred ---------ceeeecC-ceEEEecc-----------------cCcc-----cCCccccch-hhHHHhcccccc------c
Confidence 0000000 00000000 0000 000000000 000000000000 0
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHh--hccchhcccchhhHHHHHHH----------H----H
Q 037446 369 PQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLK--QGSFARFMSKNEDIRKVKLL----------M----Q 432 (1165)
Q Consensus 369 ~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~--~~~~~~ll~~~~~~~~v~~~----------l----~ 432 (1165)
.... ..+ ..+.. ...-..+. .|-..........+..+..+ . .
T Consensus 377 ~~e~-~Tl-------------------atIt~--Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~ 434 (922)
T 1nkt_A 377 KAEN-QTL-------------------ATITL--QNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQ 434 (922)
T ss_dssp CCCE-EEE-------------------EEECH--HHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEEC
T ss_pred cccc-ccc-------------------ceeeh--HHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccC
Confidence 0000 000 00000 00000000 00000000000011110000 0 0
Q ss_pred hhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHH
Q 037446 433 QSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQ 512 (1165)
Q Consensus 433 ~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~ 512 (1165)
..........|..++++.+.+... .+.++||||++++.++.|+..|...| +++..++| ++.+.++.
T Consensus 435 ~d~v~~t~~~K~~al~~~i~~~~~----~gqpvLVft~Sie~sE~Ls~~L~~~G--i~~~vLna--------k~~~rEa~ 500 (922)
T 1nkt_A 435 SDLIYKTEEAKYIAVVDDVAERYA----KGQPVLIGTTSVERSEYLSRQFTKRR--IPHNVLNA--------KYHEQEAT 500 (922)
T ss_dssp CCEEESCHHHHHHHHHHHHHHHHH----TTCCEEEEESCHHHHHHHHHHHHHTT--CCCEEECS--------SCHHHHHH
T ss_pred CcEEEeCHHHHHHHHHHHHHHHHh----cCCcEEEEECCHHHHHHHHHHHHHCC--CCEEEecC--------ChhHHHHH
Confidence 001112346789999998876544 47799999999999999999999999 88888887 45566666
Q ss_pred HHHHHHhcCCceEEEEcccccccccccCC---------------------------------------------------
Q 037446 513 AVLEKFRAGGYNVIVATSIGEEGLDIMEV--------------------------------------------------- 541 (1165)
Q Consensus 513 ~il~~Fr~g~~~VLVATda~~eGLDIp~v--------------------------------------------------- 541 (1165)
-+.++|+.| .|+|||++++||+||+.+
T Consensus 501 iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 578 (922)
T 1nkt_A 501 IIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAG 578 (922)
T ss_dssp HHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcC
Confidence 666777776 699999999999999975
Q ss_pred -CEEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHH
Q 037446 542 -DLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFV 582 (1165)
Q Consensus 542 -d~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~ 582 (1165)
.+||+++.|.|...|.||+||+||.| +|...+++..+...+
T Consensus 579 GlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 579 GLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp SEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred CcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 49999999999999999999999999 588777777655444
No 51
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.96 E-value=1.4e-30 Score=310.41 Aligned_cols=114 Identities=19% Similarity=0.153 Sum_probs=88.3
Q ss_pred CCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCC
Q 037446 462 HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEV 541 (1165)
Q Consensus 462 ~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~v 541 (1165)
+.++||||++++.++.+++.|+..+ +++..+|| ++|.++++.|++|+.+|||||+++++|||+| +
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~--~~v~~lhg------------~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v 241 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAG--KSVVVLNR------------KTFEREYPTIKQKKPDFILATDIAEMGANLC-V 241 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT--CCEEECCS------------SSCC--------CCCSEEEESSSTTCCTTCC-C
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC--CCEEEecc------------hhHHHHHhhhcCCCceEEEECChhheeeccC-c
Confidence 5799999999999999999999987 78877776 2478899999999999999999999999999 9
Q ss_pred CEEEE-------------------eccCCCHHHHHHHHhhcCCCC--CCccceec---ChhHHHHHHHHHHHH
Q 037446 542 DLVIC-------------------FDANVSPLRMIQRMGRTGRKH--DGRIPHIF---KPEVQFVELSIEQYV 590 (1165)
Q Consensus 542 d~VI~-------------------~D~p~S~~~yiQriGRagR~G--qGkiv~v~---~~d~~~~~~~Ie~~l 590 (1165)
++||+ ++.|.+...|+||+||+||.| +|.+++++ .++.......++..+
T Consensus 242 ~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 242 ERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp SEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred eEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 99996 999999999999999999984 58877775 343333333455443
No 52
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.96 E-value=1.6e-29 Score=302.99 Aligned_cols=267 Identities=21% Similarity=0.194 Sum_probs=181.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCc
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTK 203 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~ 203 (1165)
+++|++++||+|||++|++|+++.+.. .+.++||++||++|+.|+.+.+. |.. +....+..... ...+.
T Consensus 22 ~~vlv~a~TGsGKT~~~~l~il~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~---g~~---v~~~~~~~~~~----~t~~~ 90 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAVLAPTRVVAAEMAEALR---GLP---VRYQTSAVQRE----HQGNE 90 (459)
T ss_dssp CEEEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEEEECSHHHHHHHHHHTT---TSC---EEECC------------CCC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEECchHHHHHHHHHHhc---Cce---EeEEecccccC----CCCCc
Confidence 679999999999999999999887654 35789999999999999998886 221 22211111110 11345
Q ss_pred cEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccch-HHHHHHHHcCCCCCeEEEEccCCCCChHHHHHHHHhhc
Q 037446 204 RVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAY-CTAIRELMSVPVQLRILALTATPGSKQQTIQHIIDNLY 282 (1165)
Q Consensus 204 dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~-~~~l~~L~~~~~~~riL~LSATP~~~~~~l~~Li~~L~ 282 (1165)
.+.++|.+.+...+... ..+.++++|||||||++...... ...+..+. .....++++||||++.....
T Consensus 91 ~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-~~~~~~~il~SAT~~~~~~~--------- 159 (459)
T 2z83_A 91 IVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-ELGEAAAIFMTATPPGTTDP--------- 159 (459)
T ss_dssp SEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-HTTSCEEEEECSSCTTCCCS---------
T ss_pred EEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-ccCCccEEEEEcCCCcchhh---------
Confidence 67788999887766543 46788999999999985221000 01112222 23567999999999754210
Q ss_pred cccccccCCchhhhhhhhc-cCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhh
Q 037446 283 ISTLEYRNESDQDVSSYVH-NRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFR 361 (1165)
Q Consensus 283 is~i~~~~~~~~~i~~y~~-~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~ 361 (1165)
+.. ...+..+.... +
T Consensus 160 ----------------~~~~~~pi~~~~~~~-------------------------------------~----------- 175 (459)
T 2z83_A 160 ----------------FPDSNAPIHDLQDEI-------------------------------------P----------- 175 (459)
T ss_dssp ----------------SCCCSSCEEEEECCC-------------------------------------C-----------
T ss_pred ----------------hccCCCCeEEecccC-------------------------------------C-----------
Confidence 000 00000000000 0
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCC
Q 037446 362 QAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQS 441 (1165)
Q Consensus 362 ~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s 441 (1165)
.
T Consensus 176 --------~----------------------------------------------------------------------- 176 (459)
T 2z83_A 176 --------D----------------------------------------------------------------------- 176 (459)
T ss_dssp --------S-----------------------------------------------------------------------
T ss_pred --------c-----------------------------------------------------------------------
Confidence 0
Q ss_pred hHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcC
Q 037446 442 PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG 521 (1165)
Q Consensus 442 ~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g 521 (1165)
.+...+.+.|.+ .+.++||||++++.++.+++.|+..+ +.+..+||. +|.+++++|++|
T Consensus 177 ~~~~~~~~~l~~-------~~~~~LVF~~s~~~~~~l~~~L~~~g--~~v~~lh~~------------~R~~~~~~f~~g 235 (459)
T 2z83_A 177 RAWSSGYEWITE-------YAGKTVWFVASVKMGNEIAMCLQRAG--KKVIQLNRK------------SYDTEYPKCKNG 235 (459)
T ss_dssp SCCSSCCHHHHH-------CCSCEEEECSCHHHHHHHHHHHHHTT--CCEEEESTT------------CCCCCGGGSSSC
T ss_pred chhHHHHHHHHh-------cCCCEEEEeCChHHHHHHHHHHHhcC--CcEEecCHH------------HHHHHHhhccCC
Confidence 000000111222 25699999999999999999999988 788888762 577889999999
Q ss_pred CceEEEEcccccccccccCCCEEEE--------------------eccCCCHHHHHHHHhhcCCCC--CCccceecCh
Q 037446 522 GYNVIVATSIGEEGLDIMEVDLVIC--------------------FDANVSPLRMIQRMGRTGRKH--DGRIPHIFKP 577 (1165)
Q Consensus 522 ~~~VLVATda~~eGLDIp~vd~VI~--------------------~D~p~S~~~yiQriGRagR~G--qGkiv~v~~~ 577 (1165)
+.+|||||+++++|||+|+ ++||+ ||.|.++..|+||+||+||.| +|..+.++.+
T Consensus 236 ~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~ 312 (459)
T 2z83_A 236 DWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGA 312 (459)
T ss_dssp CCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcc
Confidence 9999999999999999999 99999 779999999999999999998 5777666654
No 53
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.96 E-value=1.2e-29 Score=311.70 Aligned_cols=269 Identities=20% Similarity=0.218 Sum_probs=192.3
Q ss_pred HHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCC
Q 037446 113 YQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQI 191 (1165)
Q Consensus 113 yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~ 191 (1165)
+|.+++..+.+ +++|+.++||+|||+++.+++++ .+.++||++|||+|+.|+.+.+.+.++.. +....|+.
T Consensus 221 ~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-----~g~~vLVl~PTReLA~Qia~~l~~~~g~~---vg~~vG~~ 292 (666)
T 3o8b_A 221 DNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-----QGYKVLVLNPSVAATLGFGAYMSKAHGID---PNIRTGVR 292 (666)
T ss_dssp CCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-----TTCCEEEEESCHHHHHHHHHHHHHHHSCC---CEEECSSC
T ss_pred HHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-----CCCeEEEEcchHHHHHHHHHHHHHHhCCC---eeEEECcE
Confidence 36677777655 67899999999999999988876 34589999999999999999998887754 44555654
Q ss_pred ChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHc-CCC--CCeEEEEccCCC
Q 037446 192 SPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS-VPV--QLRILALTATPG 268 (1165)
Q Consensus 192 ~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~-~~~--~~riL~LSATP~ 268 (1165)
. ...+.+|+|+||++|. ....+.+.++++|||||||.+.. .+...+..++. ++. +..+++||||++
T Consensus 293 ~------~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH~l~~--~~~~~l~~Il~~l~~~~~~llil~SAT~~ 361 (666)
T 3o8b_A 293 T------ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECHSTDS--TTILGIGTVLDQAETAGARLVVLATATPP 361 (666)
T ss_dssp E------ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTTCCSH--HHHHHHHHHHHHTTTTTCSEEEEEESSCT
T ss_pred e------ccCCCCEEEECcHHHH---hCCCcccCcccEEEEccchhcCc--cHHHHHHHHHHhhhhcCCceEEEECCCCC
Confidence 3 2367899999999984 45667788899999999977643 55555555553 222 334788899997
Q ss_pred CChHHHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCC
Q 037446 269 SKQQTIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTL 348 (1165)
Q Consensus 269 ~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l 348 (1165)
.... . ..+....+.......
T Consensus 362 ~~i~---------------~------------~~p~i~~v~~~~~~~--------------------------------- 381 (666)
T 3o8b_A 362 GSVT---------------V------------PHPNIEEVALSNTGE--------------------------------- 381 (666)
T ss_dssp TCCC---------------C------------CCTTEEEEECBSCSS---------------------------------
T ss_pred cccc---------------c------------CCcceEEEeecccch---------------------------------
Confidence 5310 0 000111111100000
Q ss_pred chhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHH
Q 037446 349 SPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVK 428 (1165)
Q Consensus 349 ~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~ 428 (1165)
. . + ..
T Consensus 382 i--~-------~---------------------------------------------------------~~--------- 386 (666)
T 3o8b_A 382 I--P-------F---------------------------------------------------------YG--------- 386 (666)
T ss_dssp E--E-------E---------------------------------------------------------TT---------
T ss_pred h--H-------H---------------------------------------------------------HH---------
Confidence 0 0 0 00
Q ss_pred HHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCH
Q 037446 429 LLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQ 508 (1165)
Q Consensus 429 ~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~ 508 (1165)
.++. + + ...+.++||||++++.++.+++.|+..+ +++..+|| +|++
T Consensus 387 -------------~~~~-----l-~-----~~~~~~vLVFv~Tr~~ae~la~~L~~~g--~~v~~lHG--------~l~q 432 (666)
T 3o8b_A 387 -------------KAIP-----I-E-----AIRGGRHLIFCHSKKKCDELAAKLSGLG--INAVAYYR--------GLDV 432 (666)
T ss_dssp -------------EEEC-----G-G-----GSSSSEEEEECSCHHHHHHHHHHHHTTT--CCEEEECT--------TSCG
T ss_pred -------------hhhh-----h-h-----hccCCcEEEEeCCHHHHHHHHHHHHhCC--CcEEEecC--------CCCH
Confidence 0000 0 0 1136799999999999999999999988 78877777 6776
Q ss_pred HHHHHHHHHHhcCCceEEEEcccccccccccCCCEEE----------Eec-----------cCCCHHHHHHHHhhcCCCC
Q 037446 509 KVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVI----------CFD-----------ANVSPLRMIQRMGRTGRKH 567 (1165)
Q Consensus 509 ~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI----------~~D-----------~p~S~~~yiQriGRagR~G 567 (1165)
++ |+++..+|||||+++++|||++ +++|| ||| .|.+...|+||+||+||..
T Consensus 433 ~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGRg~ 504 (666)
T 3o8b_A 433 SV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGR 504 (666)
T ss_dssp GG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCSSS
T ss_pred HH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCCCC
Confidence 54 4556679999999999999997 99998 677 8999999999999999933
Q ss_pred CCccceecChh
Q 037446 568 DGRIPHIFKPE 578 (1165)
Q Consensus 568 qGkiv~v~~~d 578 (1165)
+|+ +.++.++
T Consensus 505 ~G~-i~lvt~~ 514 (666)
T 3o8b_A 505 RGI-YRFVTPG 514 (666)
T ss_dssp CEE-EEESCCC
T ss_pred CCE-EEEEecc
Confidence 688 6666654
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.96 E-value=1.4e-28 Score=292.49 Aligned_cols=265 Identities=19% Similarity=0.148 Sum_probs=182.2
Q ss_pred cCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCC
Q 037446 123 FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202 (1165)
Q Consensus 123 ~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~ 202 (1165)
++++|++++||+|||++|++++++.+.. .+.++||++||++|+.|+.+.+. +. .+..+.|..... ...+
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~-~g~~~lvl~Pt~~La~Q~~~~~~---~~---~v~~~~~~~~~~----~~~~ 70 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK-KRLRTVILAPTRVVASEMYEALR---GE---PIRYMTPAVQSE----RTGN 70 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT---TS---CEEEC-------------CC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEECcHHHHHHHHHHHhC---CC---eEEEEecCcccc----CCCC
Confidence 3689999999999999999998855433 34689999999999999988775 22 344444442211 1124
Q ss_pred ccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHc--CCCCCeEEEEccCCCCChHHHHHHHHh
Q 037446 203 KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS--VPVQLRILALTATPGSKQQTIQHIIDN 280 (1165)
Q Consensus 203 ~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~--~~~~~riL~LSATP~~~~~~l~~Li~~ 280 (1165)
..+.++|.+.+...+.. ...+.++++|||||||++.. .+......+.. .....++|+|||||.+...
T Consensus 71 ~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~~--~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~-------- 139 (431)
T 2v6i_A 71 EIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLDP--ASVAARGYIETRVSMGDAGAIFMTATPPGTTE-------- 139 (431)
T ss_dssp CSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCSH--HHHHHHHHHHHHHHTTSCEEEEEESSCTTCCC--------
T ss_pred ceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCCc--cHHHHHHHHHHHhhCCCCcEEEEeCCCCcchh--------
Confidence 56677899988776655 45688899999999999832 33333333332 2456899999999975321
Q ss_pred hccccccccCCchhhhhhhhc-cCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhh
Q 037446 281 LYISTLEYRNESDQDVSSYVH-NRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDK 359 (1165)
Q Consensus 281 L~is~i~~~~~~~~~i~~y~~-~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~ 359 (1165)
.+.. ...+..+.....
T Consensus 140 -----------------~~~~~~~~i~~~~~~~~---------------------------------------------- 156 (431)
T 2v6i_A 140 -----------------AFPPSNSPIIDEETRIP---------------------------------------------- 156 (431)
T ss_dssp -----------------SSCCCSSCCEEEECCCC----------------------------------------------
T ss_pred -----------------hhcCCCCceeeccccCC----------------------------------------------
Confidence 0000 000000000000
Q ss_pred hhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCC
Q 037446 360 FRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGA 439 (1165)
Q Consensus 360 ~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~ 439 (1165)
T Consensus 157 -------------------------------------------------------------------------------- 156 (431)
T 2v6i_A 157 -------------------------------------------------------------------------------- 156 (431)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHh
Q 037446 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519 (1165)
Q Consensus 440 ~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr 519 (1165)
..++..+++.+.+ .+.++||||++++.++.+++.|+..+ +++..+|| + +|.+++++|+
T Consensus 157 -~~~~~~~~~~l~~-------~~~~~lVF~~~~~~~~~l~~~L~~~~--~~v~~lhg--------~----~r~~~~~~f~ 214 (431)
T 2v6i_A 157 -DKAWNSGYEWITE-------FDGRTVWFVHSIKQGAEIGTCLQKAG--KKVLYLNR--------K----TFESEYPKCK 214 (431)
T ss_dssp -SSCCSSCCHHHHS-------CSSCEEEECSSHHHHHHHHHHHHHTT--CCEEEEST--------T----THHHHTTHHH
T ss_pred -HHHHHHHHHHHHc-------CCCCEEEEeCCHHHHHHHHHHHHHcC--CeEEEeCC--------c----cHHHHHHhhc
Confidence 0000001122221 24589999999999999999999987 78888876 2 5788999999
Q ss_pred cCCceEEEEcccccccccccCCCE-----------------EEEeccCCCHHHHHHHHhhcCCCCC-Cccceec
Q 037446 520 AGGYNVIVATSIGEEGLDIMEVDL-----------------VICFDANVSPLRMIQRMGRTGRKHD-GRIPHIF 575 (1165)
Q Consensus 520 ~g~~~VLVATda~~eGLDIp~vd~-----------------VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~ 575 (1165)
+|+.+|||||+++++|||+| +.+ ||+++.|.+...|+||+||+||.|+ +..++++
T Consensus 215 ~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 215 SEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp HSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred CCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 99999999999999999999 554 6788999999999999999999984 3344444
No 55
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.96 E-value=1.8e-29 Score=313.85 Aligned_cols=292 Identities=19% Similarity=0.175 Sum_probs=195.0
Q ss_pred HHHHCCCC-----CCCCCCChHHHHHHHHHhh-------cCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecCh
Q 037446 96 AEAAKTWI-----YPVNVPVRDYQFAITKTAL-------FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163 (1165)
Q Consensus 96 ~L~~~g~~-----~Pt~IQlr~yQ~eal~~ll-------~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr 163 (1165)
++...||. +|++||-+..|..++..++ ++++|++++||+|||++|++++++.+.. .+.++|||+||+
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-~~~~~lilaPTr 280 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-KRLRTAVLAPTR 280 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-TTCCEEEEESSH
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEccHH
Confidence 34456666 8999996434445555544 4899999999999999999999877654 356899999999
Q ss_pred hHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccc
Q 037446 164 PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYA 243 (1165)
Q Consensus 164 ~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~ 243 (1165)
+|+.|+.+.+..+ +. ....+... .....+.-+-+.+.+.+...+... ..+.++++|||||||++.. .
T Consensus 281 ~La~Q~~~~l~~~-~i-----~~~~~~l~----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~~~--~ 347 (673)
T 2wv9_A 281 VVAAEMAEALRGL-PV-----RYLTPAVQ----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFTDP--A 347 (673)
T ss_dssp HHHHHHHHHTTTS-CC-----EECCC-------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCCCH--H
T ss_pred HHHHHHHHHHhcC-Ce-----eeeccccc----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcccCc--c
Confidence 9999999888753 21 11111100 000112234556666665544432 5678899999999999922 2
Q ss_pred hHHHHHHHHcC--CCCCeEEEEccCCCCChHHHHHHHHhhccccccccCCchhhhhhhhc-cCceEEEEeccchhHHHHH
Q 037446 244 YCTAIRELMSV--PVQLRILALTATPGSKQQTIQHIIDNLYISTLEYRNESDQDVSSYVH-NRKIELIEVEMGQEAVEIN 320 (1165)
Q Consensus 244 ~~~~l~~L~~~--~~~~riL~LSATP~~~~~~l~~Li~~L~is~i~~~~~~~~~i~~y~~-~~~~~~i~v~~~~~~~~i~ 320 (1165)
+...+..+... ....++|+|||||..... .+.. ...+..+.....
T Consensus 348 ~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~-------------------------~~~~~~~~i~~v~~~~~------- 395 (673)
T 2wv9_A 348 SIAARGYIATRVEAGEAAAIFMTATPPGTSD-------------------------PFPDTNSPVHDVSSEIP------- 395 (673)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECSSCTTCCC-------------------------SSCCCSSCEEEEECCCC-------
T ss_pred HHHHHHHHHHhccccCCcEEEEcCCCChhhh-------------------------hhcccCCceEEEeeecC-------
Confidence 22222222221 256799999999965421 0000 000000000000
Q ss_pred HHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchH
Q 037446 321 NRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRP 400 (1165)
Q Consensus 321 ~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~ 400 (1165)
T Consensus 396 -------------------------------------------------------------------------------- 395 (673)
T 2wv9_A 396 -------------------------------------------------------------------------------- 395 (673)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHH
Q 037446 401 AYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMN 480 (1165)
Q Consensus 401 ~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~ 480 (1165)
..++..++..+.+ .+.++||||++++.++.+++
T Consensus 396 ----------------------------------------~~~~~~~l~~l~~-------~~~~~lVF~~s~~~~e~la~ 428 (673)
T 2wv9_A 396 ----------------------------------------DRAWSSGFEWITD-------YAGKTVWFVASVKMSNEIAQ 428 (673)
T ss_dssp ----------------------------------------SSCCSSCCHHHHS-------CCSCEEEECSSHHHHHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHh-------CCCCEEEEECCHHHHHHHHH
Confidence 0000001111211 36799999999999999999
Q ss_pred HHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEE--------------
Q 037446 481 ALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVIC-------------- 546 (1165)
Q Consensus 481 ~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~-------------- 546 (1165)
.|+..+ +++..+|| ++|.++++.|++|+.+|||||+++++|||+| +++||+
T Consensus 429 ~L~~~g--~~v~~lHg------------~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~ 493 (673)
T 2wv9_A 429 CLQRAG--KRVIQLNR------------KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGE 493 (673)
T ss_dssp HHHTTT--CCEEEECS------------SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTT
T ss_pred HHHhCC--CeEEEeCh------------HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeeccc
Confidence 999987 88888886 2689999999999999999999999999999 999998
Q ss_pred ------eccCCCHHHHHHHHhhcCCC-C-CCccceec
Q 037446 547 ------FDANVSPLRMIQRMGRTGRK-H-DGRIPHIF 575 (1165)
Q Consensus 547 ------~D~p~S~~~yiQriGRagR~-G-qGkiv~v~ 575 (1165)
||.|.++..|+||+||+||. | +|.+++++
T Consensus 494 ~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 494 GRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp CEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred ccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 67899999999999999999 4 47766664
No 56
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=1.4e-27 Score=307.78 Aligned_cols=362 Identities=17% Similarity=0.213 Sum_probs=220.6
Q ss_pred CCCChHHHHHHHHHhhc---------------CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeEEEEecChhHHHHHH
Q 037446 107 NVPVRDYQFAITKTALF---------------SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIVFAAPSRPLVMQQI 170 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~---------------rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rvLILvPtr~La~Q~~ 170 (1165)
.+.+|+||.+++..++. +++|++++||||||+++ +++..++... ...++|||||+++|+.||.
T Consensus 269 ~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 269 LLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHH
Confidence 46899999999998764 57999999999999998 4455555432 2358999999999999999
Q ss_pred HHHHHHhCCCCceEEEEeCCCCh-HHHHhh-cCCccEEEEcHHHHHHHHHcCc--cCCCCccEEEEcccccccCccchHH
Q 037446 171 EACHNIVGIPQEWTIDMTGQISP-TKRASF-WKTKRVFFVTPQVLEKDIQSGT--CLMKYLVCLVIDEAHRATGNYAYCT 246 (1165)
Q Consensus 171 ~e~~kl~g~~~~~v~~l~G~~~~-~~~~~l-~~~~dIlVaTpq~L~~~l~~~~--~~l~~~~lVVIDEAHrl~~~~~~~~ 246 (1165)
++|.++... .+.|+.+. ..+..+ ..+.+|+|+||++|...+.... ..+..+.+||+|||||+... .
T Consensus 348 ~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~----~ 417 (1038)
T 2w00_A 348 KEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG----E 417 (1038)
T ss_dssp HHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH----H
T ss_pred HHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch----H
Confidence 999986432 12233332 333333 2468999999999998776432 23457899999999998642 2
Q ss_pred HHHHHHcCCCCCeEEEEccCCCCChH-----HHHHHHHhhccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHH
Q 037446 247 AIRELMSVPVQLRILALTATPGSKQQ-----TIQHIIDNLYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINN 321 (1165)
Q Consensus 247 ~l~~L~~~~~~~riL~LSATP~~~~~-----~l~~Li~~L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~ 321 (1165)
..+.+....++.++|||||||..... ....+++ .. ...+.+.+
T Consensus 418 ~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG----------------------~~---i~~Y~l~~------- 465 (1038)
T 2w00_A 418 AQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFG----------------------RE---LHSYVITD------- 465 (1038)
T ss_dssp HHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHC----------------------SE---EEEECHHH-------
T ss_pred HHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhC----------------------Ce---eEeecHHH-------
Confidence 33555554556789999999975421 2222221 10 01111000
Q ss_pred HHHHHHhhHHHHHhhhcccccc--cccCCchhhhhhhhhhhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCch
Q 037446 322 RIWEVIRPYTSRLSAIGLLQNR--DYQTLSPVDLLNSRDKFRQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIR 399 (1165)
Q Consensus 322 ~l~~~i~~~~~rl~~~~vl~~~--~~~~l~p~~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~ 399 (1165)
.+ ..+.+..- .|..+.+. + .. .. ....
T Consensus 466 AI------------~dg~l~p~~v~y~~v~~~--------~--------------------~~----------~~-~e~d 494 (1038)
T 2w00_A 466 AI------------RDEKVLKFKVDYNDVRPQ--------F--------------------KS----------LE-TETD 494 (1038)
T ss_dssp HH------------HHTSSCCEEEEECCCCGG--------G--------------------HH----------HH-TCCC
T ss_pred HH------------hCCCcCCeEEEEEeccch--------h--------------------hh----------cc-cccc
Confidence 00 00000000 00000000 0 00 00 0000
Q ss_pred HHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhccc------CCCCCeEEEEeCchH
Q 037446 400 PAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQSPKLSKMLEVLVDHFKTK------DPKHSRVIIFSNFRG 473 (1165)
Q Consensus 400 ~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~s~Kl~~LlelL~~~~~~~------~~~~~kvIVF~~sr~ 473 (1165)
............ .....++..+++.+.+++... ...+.++||||+++.
T Consensus 495 ------~~~~~~i~~~~~--------------------l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~ 548 (1038)
T 2w00_A 495 ------EKKLSAAENQQA--------------------FLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVD 548 (1038)
T ss_dssp ------HHHHHHTCSTTT--------------------TTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHH
T ss_pred ------HHHHHHHHHHHH--------------------hcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHH
Confidence 000000000000 012344555565555554311 123578999999999
Q ss_pred HHHHHHHHHHhcCC----------Cccc-eeeecccc------cccC------CCCCH----------------------
Q 037446 474 SVRDIMNALATIGD----------LVKA-TEFIGQSS------GKAS------KGQSQ---------------------- 508 (1165)
Q Consensus 474 ~ae~L~~~L~~~g~----------~i~~-~~l~G~~~------g~~~------ggms~---------------------- 508 (1165)
.|..+++.|...+. .+++ +.++|... |.+. .+|++
T Consensus 549 ~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~ 628 (1038)
T 2w00_A 549 AAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFS 628 (1038)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhccccc
Confidence 99999999987641 1333 44554211 0010 11232
Q ss_pred -------HHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCC-c----cceecC
Q 037446 509 -------KVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDG-R----IPHIFK 576 (1165)
Q Consensus 509 -------~eR~~il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqG-k----iv~v~~ 576 (1165)
..|..++++|++|+++|||+|+++.+|+|+|.+ .|+.+|.|.+...|+|++||++|.+.+ + ++.+..
T Consensus 629 ~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 629 TDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred ccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 258899999999999999999999999999999 678899999999999999999999853 2 444443
Q ss_pred hhHHHHHHHHHHHH
Q 037446 577 PEVQFVELSIEQYV 590 (1165)
Q Consensus 577 ~d~~~~~~~Ie~~l 590 (1165)
....+..++..|-
T Consensus 708 -~~~~l~~Al~~y~ 720 (1038)
T 2w00_A 708 -LERSTIDAITLFG 720 (1038)
T ss_dssp -CHHHHHHHHHHTS
T ss_pred -cHHHHHHHHHHHh
Confidence 3444555665553
No 57
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.94 E-value=1.4e-25 Score=278.49 Aligned_cols=271 Identities=18% Similarity=0.199 Sum_probs=187.0
Q ss_pred cCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCC
Q 037446 123 FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202 (1165)
Q Consensus 123 ~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~ 202 (1165)
++++|+++|||+|||+.++. .+... ++.+|++||++|+.|+++.+.+. |. .+..++|+..... ..--..
T Consensus 155 rk~vlv~apTGSGKT~~al~----~l~~~--~~gl~l~PtR~LA~Qi~~~l~~~-g~---~v~lltG~~~~iv-~TpGr~ 223 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYHAIQ----KYFSA--KSGVYCGPLKLLAHEIFEKSNAA-GV---PCDLVTGEERVTV-QPNGKQ 223 (677)
T ss_dssp CEEEEEECCTTSSHHHHHHH----HHHHS--SSEEEEESSHHHHHHHHHHHHHT-TC---CEEEECSSCEECC-STTCCC
T ss_pred CCEEEEEcCCCCCHHHHHHH----HHHhc--CCeEEEeCHHHHHHHHHHHHHhc-CC---cEEEEECCeeEEe-cCCCcc
Confidence 36899999999999984333 33222 45699999999999999999885 43 4777888755310 000013
Q ss_pred ccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHH-HHHcCC-CCCeEEEEccCCCCChHHHHHHHHh
Q 037446 203 KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIR-ELMSVP-VQLRILALTATPGSKQQTIQHIIDN 280 (1165)
Q Consensus 203 ~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~-~L~~~~-~~~riL~LSATP~~~~~~l~~Li~~ 280 (1165)
.+++++|++.+. ....+++|||||||++.+. ++...+. .+..+. ...+++++|||. ..+.++...
T Consensus 224 ~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~-~~g~~~~~~l~~l~~~~i~il~~SAT~----~~i~~l~~~ 290 (677)
T 3rc3_A 224 ASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDP-ARGWAWTRALLGLCAEEVHLCGEPAAI----DLVMELMYT 290 (677)
T ss_dssp CSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCT-TTHHHHHHHHHHCCEEEEEEEECGGGH----HHHHHHHHH
T ss_pred cceeEecHhHhh--------hcccCCEEEEecceecCCc-cchHHHHHHHHccCccceEEEeccchH----HHHHHHHHh
Confidence 688999987653 2467899999999999764 4544444 344454 567899999993 223333322
Q ss_pred hccccccccCCchhhhhhhhccCceEEEEeccchhHHHHHHHHHHHHhhHHHHHhhhcccccccccCCchhhhhhhhhhh
Q 037446 281 LYISTLEYRNESDQDVSSYVHNRKIELIEVEMGQEAVEINNRIWEVIRPYTSRLSAIGLLQNRDYQTLSPVDLLNSRDKF 360 (1165)
Q Consensus 281 L~is~i~~~~~~~~~i~~y~~~~~~~~i~v~~~~~~~~i~~~l~~~i~~~~~rl~~~~vl~~~~~~~l~p~~l~~~~~~~ 360 (1165)
.. ........ ....+..+
T Consensus 291 ~~--------------------~~~~v~~~-----------------------------------~r~~~l~~------- 308 (677)
T 3rc3_A 291 TG--------------------EEVEVRDY-----------------------------------KRLTPISV------- 308 (677)
T ss_dssp HT--------------------CCEEEEEC-----------------------------------CCSSCEEE-------
T ss_pred cC--------------------CceEEEEe-----------------------------------eecchHHH-------
Confidence 10 00000000 00000000
Q ss_pred hcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccchhcccchhhHHHHHHHHHhhhccCCC
Q 037446 361 RQAPPPNLPQIKFGEVEAYFGALITLYHIRRLLSSHGIRPAYEMLEEKLKQGSFARFMSKNEDIRKVKLLMQQSISHGAQ 440 (1165)
Q Consensus 361 ~~~~~~~i~~~~~~~l~~~~~~L~~l~~i~~ll~~~g~~~~~~~L~~~~~~~~~~~ll~~~~~~~~v~~~l~~~~~~~~~ 440 (1165)
..
T Consensus 309 ~~------------------------------------------------------------------------------ 310 (677)
T 3rc3_A 309 LD------------------------------------------------------------------------------ 310 (677)
T ss_dssp CS------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 00
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhc
Q 037446 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA 520 (1165)
Q Consensus 441 s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~ 520 (1165)
. .+..+.. .....||||.+++.++.+++.|...+ +.+..+|| +|++++|..+++.|++
T Consensus 311 -~----~l~~l~~-------~~~g~iIf~~s~~~ie~la~~L~~~g--~~v~~lHG--------~L~~~~R~~~~~~F~~ 368 (677)
T 3rc3_A 311 -H----ALESLDN-------LRPGDCIVCFSKNDIYSVSRQIEIRG--LESAVIYG--------SLPPGTKLAQAKKFND 368 (677)
T ss_dssp -S----CCCSGGG-------CCTTEEEECSSHHHHHHHHHHHHHTT--CCCEEECT--------TSCHHHHHHHHHHHHC
T ss_pred -H----HHHHHHh-------cCCCCEEEEcCHHHHHHHHHHHHhcC--CCeeeeec--------cCCHHHHHHHHHHHHc
Confidence 0 0000000 12345899999999999999999887 66766666 8999999999999998
Q ss_pred --CCceEEEEcccccccccccCCCEEEEecc--------------CCCHHHHHHHHhhcCCCCC----CccceecChhHH
Q 037446 521 --GGYNVIVATSIGEEGLDIMEVDLVICFDA--------------NVSPLRMIQRMGRTGRKHD----GRIPHIFKPEVQ 580 (1165)
Q Consensus 521 --g~~~VLVATda~~eGLDIp~vd~VI~~D~--------------p~S~~~yiQriGRagR~Gq----Gkiv~v~~~d~~ 580 (1165)
|..+|||||+++++|||+ .+++||+++. |.+...|+||+|||||.|. |.+++++..+..
T Consensus 369 ~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~ 447 (677)
T 3rc3_A 369 PNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLS 447 (677)
T ss_dssp TTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHH
T ss_pred cCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHH
Confidence 889999999999999999 8999999999 8899999999999999993 556666655543
No 58
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.92 E-value=1.7e-24 Score=235.37 Aligned_cols=189 Identities=16% Similarity=0.130 Sum_probs=156.1
Q ss_pred CCCCCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHh-CCC
Q 037446 77 EEFNEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRW-FPD 153 (1165)
Q Consensus 77 ~~~~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~-~~~ 153 (1165)
..+.+..+|++ ++++.+++.+...||.. ++++|.+++..+.. +++++.++||+|||++|+++++..+.. ...
T Consensus 18 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~-----~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~ 92 (230)
T 2oxc_A 18 VLLAEPADFESLLLSRPVLEGLRAAGFER-----PSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLS 92 (230)
T ss_dssp ------CCGGGGTCCHHHHHHHHHTTCCS-----CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCS
T ss_pred CCCCCCCCHhhcCCCHHHHHHHHHCCCCC-----CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCC
Confidence 34445568999 99999999999999875 56778888888776 799999999999999999999887643 345
Q ss_pred CeEEEEecChhHHHHHHHHHHHHhCC-CCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEE
Q 037446 154 GKIVFAAPSRPLVMQQIEACHNIVGI-PQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVI 232 (1165)
Q Consensus 154 ~rvLILvPtr~La~Q~~~e~~kl~g~-~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVI 232 (1165)
.++|||+||++|+.||.++++++... +...+..+.|+.....+...+.+++|+|+||++|.+.+..+.+.+.++++|||
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 68999999999999999999998643 35778889999887777666678999999999999998887778889999999
Q ss_pred cccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCC
Q 037446 233 DEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSK 270 (1165)
Q Consensus 233 DEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~ 270 (1165)
||||++.+...|...+..++. ++...++++||||++..
T Consensus 173 DEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~ 211 (230)
T 2oxc_A 173 DEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEF 211 (230)
T ss_dssp SSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHH
T ss_pred CCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHH
Confidence 999999876347777777764 55578999999998643
No 59
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.92 E-value=7.8e-25 Score=239.79 Aligned_cols=192 Identities=19% Similarity=0.149 Sum_probs=159.6
Q ss_pred CCCCCCCCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC
Q 037446 74 QGTEEFNEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF 151 (1165)
Q Consensus 74 ~~~~~~~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~ 151 (1165)
.+...+.+..+|++ ++++.+++.+...||..| +++|.+++..++. +++++.++||+|||++|++|++..+...
T Consensus 20 ~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~-----~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~ 94 (242)
T 3fe2_A 20 RGHNCPKPVLNFYEANFPANVMDVIARQNFTEP-----TAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 94 (242)
T ss_dssp ESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSC-----CHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTS
T ss_pred eCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCC-----CHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhc
Confidence 34455566678999 999999999999999764 5667777777765 8999999999999999999999887642
Q ss_pred ------CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHHHHHHcCccCC
Q 037446 152 ------PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLEKDIQSGTCLM 224 (1165)
Q Consensus 152 ------~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~~~l~~~~~~l 224 (1165)
.++++|||+||++|+.|+.+.++++.......+..++|+.....+ ..+..+++|+|+||++|.+.+..+...+
T Consensus 95 ~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 174 (242)
T 3fe2_A 95 PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNL 174 (242)
T ss_dssp CCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCC
T ss_pred cccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCc
Confidence 356899999999999999999998876556678888888876544 4455678999999999999998888889
Q ss_pred CCccEEEEcccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCCh
Q 037446 225 KYLVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQ 271 (1165)
Q Consensus 225 ~~~~lVVIDEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~ 271 (1165)
.++++|||||||++.+. +|...+..+.. ++...++++||||+++..
T Consensus 175 ~~~~~lViDEah~l~~~-~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~ 221 (242)
T 3fe2_A 175 RRTTYLVLDEADRMLDM-GFEPQIRKIVDQIRPDRQTLMWSATWPKEV 221 (242)
T ss_dssp TTCCEEEETTHHHHHHT-TCHHHHHHHHTTSCSSCEEEEEESCCCHHH
T ss_pred ccccEEEEeCHHHHhhh-CcHHHHHHHHHhCCccceEEEEEeecCHHH
Confidence 99999999999999885 67777777775 456789999999987543
No 60
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=3.9e-24 Score=230.30 Aligned_cols=186 Identities=14% Similarity=0.171 Sum_probs=154.2
Q ss_pred CCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCC-CCeEEE
Q 037446 82 GSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFP-DGKIVF 158 (1165)
Q Consensus 82 ~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~-~~rvLI 158 (1165)
..+|++ +|++.+++++...||.. +++||.+++..+.. +++++.++||+|||++|+++++..+.... ..++||
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~-----~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~li 87 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEH-----PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLV 87 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCC-----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEE
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCC-----CCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEE
Confidence 357999 99999999999999864 67788899988776 89999999999999999999998875543 348999
Q ss_pred EecChhHHHHHHHHHHHHhCCC-CceEEEEeCCCChHHHHhhc--CCccEEEEcHHHHHHHHHcCccCCCCccEEEEccc
Q 037446 159 AAPSRPLVMQQIEACHNIVGIP-QEWTIDMTGQISPTKRASFW--KTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEA 235 (1165)
Q Consensus 159 LvPtr~La~Q~~~e~~kl~g~~-~~~v~~l~G~~~~~~~~~l~--~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEA 235 (1165)
|+|+++|+.||.++++++.... ...+..+.|+.....+...+ ..++|+|+||++|...+....+.+.++++||||||
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 88 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 167 (220)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESH
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCH
Confidence 9999999999999999987543 56788888988765443322 34699999999999998887788899999999999
Q ss_pred ccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChH
Q 037446 236 HRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQ 272 (1165)
Q Consensus 236 Hrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~ 272 (1165)
|++.+..++...+..+.. .+...++++||||+++...
T Consensus 168 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 205 (220)
T 1t6n_A 168 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR 205 (220)
T ss_dssp HHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTH
T ss_pred HHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHH
Confidence 999875577777777765 4557899999999987644
No 61
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.92 E-value=5.6e-24 Score=229.53 Aligned_cols=185 Identities=16% Similarity=0.128 Sum_probs=148.8
Q ss_pred CCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeEE
Q 037446 81 EGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIV 157 (1165)
Q Consensus 81 ~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rvL 157 (1165)
...+|++ ++++.+++.+...||.. +++||.+++..+.. +++++.++||+|||++|++++++.+... ...++|
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g~~~-----~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~l 86 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYGFEE-----PSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQAL 86 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCS-----CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCC-----CcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEE
Confidence 3457999 99999999999999874 67788888888776 7999999999999999999999887543 445899
Q ss_pred EEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccccc
Q 037446 158 FAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHR 237 (1165)
Q Consensus 158 ILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHr 237 (1165)
|++|+++|+.||.+.+.++.......+..+.|+.........+..++|+|+||++|...+......+.++++|||||||+
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 87 MLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 166 (224)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred EEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH
Confidence 99999999999999999987666677888888877655555555699999999999999888778889999999999999
Q ss_pred ccCccchHHHHHHHHc-CCCCCeEEEEccCCCCCh
Q 037446 238 ATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQ 271 (1165)
Q Consensus 238 l~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~ 271 (1165)
+.+. ++...+..+.. ++...++++||||+++..
T Consensus 167 ~~~~-~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~ 200 (224)
T 1qde_A 167 MLSS-GFKEQIYQIFTLLPPTTQVVLLSATMPNDV 200 (224)
T ss_dssp HHHT-TCHHHHHHHHHHSCTTCEEEEEESSCCHHH
T ss_pred Hhhh-hhHHHHHHHHHhCCccCeEEEEEeecCHHH
Confidence 9875 56665666554 566789999999997643
No 62
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.91 E-value=6.7e-24 Score=231.08 Aligned_cols=185 Identities=19% Similarity=0.209 Sum_probs=152.1
Q ss_pred CCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHh-----CCCC
Q 037446 82 GSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRW-----FPDG 154 (1165)
Q Consensus 82 ~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~-----~~~~ 154 (1165)
..+|++ ++++.+++.+...+|.. ++++|.+++..++. +++++.++||+|||++|++|+++.+.. ..+.
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~-----~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 98 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRL-----VTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGL 98 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCB-----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCC-----CCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCc
Confidence 457999 99999999999999975 56777888888775 899999999999999999999987754 2456
Q ss_pred eEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcC-ccCCCCccEEEEc
Q 037446 155 KIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSG-TCLMKYLVCLVID 233 (1165)
Q Consensus 155 rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~-~~~l~~~~lVVID 233 (1165)
++|||+||++|+.||.++++++.......+..++|+...........+++|+|+||++|.+.+... .+.+.++++||||
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 178 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLD 178 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEET
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEe
Confidence 899999999999999999999876656778888888776555555578999999999999887654 4667899999999
Q ss_pred ccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChH
Q 037446 234 EAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQ 272 (1165)
Q Consensus 234 EAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~ 272 (1165)
|||++.+. ++...+..++. ++...++++||||++....
T Consensus 179 Eah~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 217 (236)
T 2pl3_A 179 EADRILDM-GFADTMNAVIENLPKKRQTLLFSATQTKSVK 217 (236)
T ss_dssp THHHHHHT-TTHHHHHHHHHTSCTTSEEEEEESSCCHHHH
T ss_pred ChHHHhcC-CcHHHHHHHHHhCCCCCeEEEEEeeCCHHHH
Confidence 99999875 66677777664 5567889999999976543
No 63
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=1.2e-23 Score=223.67 Aligned_cols=182 Identities=18% Similarity=0.209 Sum_probs=152.9
Q ss_pred CCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeEEEE
Q 037446 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIVFA 159 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rvLIL 159 (1165)
.+|++ +|++.+++.+...||.. +++||.+++..+.. +++++.+|||+|||++|+++++..+... ...++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~-----~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEK-----PSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCS-----CCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCC-----CCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEE
Confidence 47999 99999999999999874 67788888888876 7999999999999999999999876433 34589999
Q ss_pred ecChhHHHHHHHHHHHHhCCC-CceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccccc
Q 037446 160 APSRPLVMQQIEACHNIVGIP-QEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHR 237 (1165)
Q Consensus 160 vPtr~La~Q~~~e~~kl~g~~-~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHr 237 (1165)
+|+++|+.||.+.+.++.... ...+..+.|+...... ..+..+++|+|+||++|...+..+...+.++++|||||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999987543 5677888888776543 34556789999999999999988878889999999999999
Q ss_pred ccCccchHHHHHHHHc-CCCCCeEEEEccCCCCC
Q 037446 238 ATGNYAYCTAIRELMS-VPVQLRILALTATPGSK 270 (1165)
Q Consensus 238 l~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~ 270 (1165)
+.+. ++...+..+.. ++...++++||||++..
T Consensus 158 ~~~~-~~~~~l~~i~~~~~~~~~~l~~SAT~~~~ 190 (206)
T 1vec_A 158 LLSQ-DFVQIMEDIILTLPKNRQILLYSATFPLS 190 (206)
T ss_dssp HTST-TTHHHHHHHHHHSCTTCEEEEEESCCCHH
T ss_pred hHhh-CcHHHHHHHHHhCCccceEEEEEeeCCHH
Confidence 9874 67777777664 55578999999999754
No 64
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.91 E-value=7.9e-24 Score=228.00 Aligned_cols=183 Identities=20% Similarity=0.185 Sum_probs=151.1
Q ss_pred CCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeEEEE
Q 037446 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIVFA 159 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rvLIL 159 (1165)
.+|++ ++++.+++++...||.. ++++|.+++..+.. +++++.++||+|||++|++++++.+... .+.++|||
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~-----~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 78 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYK-----PTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVIT 78 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCS-----CCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CCHhhCCCCHHHHHHHHHCCCCC-----CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEE
Confidence 47999 99999999999999875 56778888888776 8999999999999999999999887543 34689999
Q ss_pred ecChhHHHHHHHHHHHHhCCC----CceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcc
Q 037446 160 APSRPLVMQQIEACHNIVGIP----QEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDE 234 (1165)
Q Consensus 160 vPtr~La~Q~~~e~~kl~g~~----~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDE 234 (1165)
+||++|+.||.++++++.+.. ...+..+.|+...... ..+..+++|+|+||++|.+.+..+.+.+.++++|||||
T Consensus 79 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDE 158 (219)
T 1q0u_A 79 APTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDE 158 (219)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECS
T ss_pred cCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcC
Confidence 999999999999999987643 4567777887765443 23345789999999999999988777888999999999
Q ss_pred cccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCCh
Q 037446 235 AHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQ 271 (1165)
Q Consensus 235 AHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~ 271 (1165)
||++.+. ++...+..+.. ++...++++||||+++..
T Consensus 159 ah~~~~~-~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~ 195 (219)
T 1q0u_A 159 ADLMLDM-GFITDVDQIAARMPKDLQMLVFSATIPEKL 195 (219)
T ss_dssp HHHHHHT-TCHHHHHHHHHTSCTTCEEEEEESCCCGGG
T ss_pred chHHhhh-ChHHHHHHHHHhCCcccEEEEEecCCCHHH
Confidence 9999875 56666666664 556789999999997654
No 65
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.91 E-value=7e-24 Score=229.73 Aligned_cols=187 Identities=17% Similarity=0.127 Sum_probs=149.1
Q ss_pred CCCCCCCCCCc--cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHh---
Q 037446 77 EEFNEGSSFDE--SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRW--- 150 (1165)
Q Consensus 77 ~~~~~~~sFee--~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~--- 150 (1165)
..+....+|++ ++++.+++++...||.. ++++|.+++..+.. +++++.++||+|||++|++|++..+..
T Consensus 13 ~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~-----~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~ 87 (228)
T 3iuy_A 13 LIPKPTCRFKDAFQQYPDLLKSIIRVGILK-----PTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPI 87 (228)
T ss_dssp CCCCCCCSHHHHHTTCHHHHHHHHHHTCCS-----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC----
T ss_pred cCCCChhhHhhhhccCHHHHHHHHHCCCCC-----CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccc
Confidence 34445567887 89999999999999975 56677888887765 899999999999999999999887643
Q ss_pred ----CCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHH-HHhhcCCccEEEEcHHHHHHHHHcCccCCC
Q 037446 151 ----FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQSGTCLMK 225 (1165)
Q Consensus 151 ----~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~ 225 (1165)
..+.++|||+||++|+.|+.+++.++. .....+..++|+..... ...+..+++|+|+||++|.+.+....+.+.
T Consensus 88 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~ 166 (228)
T 3iuy_A 88 SREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLR 166 (228)
T ss_dssp -----CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCT
T ss_pred hhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcc
Confidence 245689999999999999999999975 34556777777766443 345567899999999999999888888889
Q ss_pred CccEEEEcccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCC
Q 037446 226 YLVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSK 270 (1165)
Q Consensus 226 ~~~lVVIDEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~ 270 (1165)
++++|||||||++.+. ++...+..++. ++...++++||||+++.
T Consensus 167 ~~~~lViDEah~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~ 211 (228)
T 3iuy_A 167 SITYLVIDEADKMLDM-EFEPQIRKILLDVRPDRQTVMTSATWPDT 211 (228)
T ss_dssp TCCEEEECCHHHHHHT-TCHHHHHHHHHHSCSSCEEEEEESCCCHH
T ss_pred cceEEEEECHHHHhcc-chHHHHHHHHHhCCcCCeEEEEEeeCCHH
Confidence 9999999999999875 66666666654 56678999999998754
No 66
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.91 E-value=7.7e-24 Score=233.20 Aligned_cols=185 Identities=19% Similarity=0.177 Sum_probs=153.7
Q ss_pred CCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC-------
Q 037446 81 EGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF------- 151 (1165)
Q Consensus 81 ~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~------- 151 (1165)
...+|++ +|++.+++++...||.. ++++|.+++..++. +++++.++||+|||++|++|++..+...
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~-----~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~ 95 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQR-----PTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRY 95 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCS-----CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC-----
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCC-----CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccc
Confidence 4457999 99999999999888875 56778888888876 7999999999999999999999887543
Q ss_pred ---CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHH-HHhhcCCccEEEEcHHHHHHHHHcCccCCCCc
Q 037446 152 ---PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQSGTCLMKYL 227 (1165)
Q Consensus 152 ---~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~ 227 (1165)
...++|||+||++|+.||.++++++.......+..+.|+..... ...+..+++|+|+||++|.+.+....+.+.++
T Consensus 96 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 96 SKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp -CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred cccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 23589999999999999999999987666667777888776543 44556778999999999999998888888999
Q ss_pred cEEEEcccccccCccchHHHHHHHHc---CCC--CCeEEEEccCCCCCh
Q 037446 228 VCLVIDEAHRATGNYAYCTAIRELMS---VPV--QLRILALTATPGSKQ 271 (1165)
Q Consensus 228 ~lVVIDEAHrl~~~~~~~~~l~~L~~---~~~--~~riL~LSATP~~~~ 271 (1165)
++|||||||++.+. +|...+..+.. .+. ..++++||||+++..
T Consensus 176 ~~lViDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~ 223 (253)
T 1wrb_A 176 KYIVLDEADRMLDM-GFEPQIRKIIEESNMPSGINRQTLMFSATFPKEI 223 (253)
T ss_dssp CEEEEETHHHHHHT-TCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHH
T ss_pred CEEEEeCHHHHHhC-chHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHH
Confidence 99999999999875 67777777765 233 578999999997553
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.91 E-value=1.9e-23 Score=222.19 Aligned_cols=181 Identities=19% Similarity=0.166 Sum_probs=150.6
Q ss_pred CCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHh----CCCCeE
Q 037446 83 SSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRW----FPDGKI 156 (1165)
Q Consensus 83 ~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~----~~~~rv 156 (1165)
++|++ ++++.+++.+...+|.. +++||.+++..+.. +++++.++||+|||++|++++++.+.. ....++
T Consensus 1 ~~f~~~~l~~~l~~~l~~~~~~~-----~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~ 75 (207)
T 2gxq_A 1 MEFKDFPLKPEILEALHGRGLTT-----PTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRA 75 (207)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCS-----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSE
T ss_pred CChhhcCCCHHHHHHHHHcCCCC-----CCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcE
Confidence 36888 99999999999999875 66788888888877 899999999999999999999988753 345689
Q ss_pred EEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChH-HHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEccc
Q 037446 157 VFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPT-KRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEA 235 (1165)
Q Consensus 157 LILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~-~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEA 235 (1165)
||++|+++|+.||.+++.++++. ..+..+.|+.... ....+..+++|+|+||+++.+.+..+.+.+.++++||+|||
T Consensus 76 lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEa 153 (207)
T 2gxq_A 76 LVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEA 153 (207)
T ss_dssp EEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESH
T ss_pred EEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEECh
Confidence 99999999999999999998653 5567777777643 33445567999999999999998887788899999999999
Q ss_pred ccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCCh
Q 037446 236 HRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQ 271 (1165)
Q Consensus 236 Hrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~ 271 (1165)
|++.+. ++...+..++. .+...++++||||+++..
T Consensus 154 h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 189 (207)
T 2gxq_A 154 DEMLSM-GFEEEVEALLSATPPSRQTLLFSATLPSWA 189 (207)
T ss_dssp HHHHHT-TCHHHHHHHHHTSCTTSEEEEECSSCCHHH
T ss_pred hHhhcc-chHHHHHHHHHhCCccCeEEEEEEecCHHH
Confidence 999875 66666666664 556789999999997543
No 68
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.91 E-value=1.3e-23 Score=229.34 Aligned_cols=186 Identities=16% Similarity=0.143 Sum_probs=146.4
Q ss_pred CCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeE
Q 037446 80 NEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKI 156 (1165)
Q Consensus 80 ~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rv 156 (1165)
....+|++ +|++.+++++...||.. ++++|.+++..++. +++|+.++||+|||++|++++++.+... ...++
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~g~~~-----~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~ 101 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAYGFEK-----PSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQA 101 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHHTCCS-----CCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCE
T ss_pred CccCChhhcCCCHHHHHHHHHCCCCC-----CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceE
Confidence 34568999 99999999999999875 56778888887776 7999999999999999999999887543 45689
Q ss_pred EEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHH-HHhhcCC-ccEEEEcHHHHHHHHHcCccCCCCccEEEEcc
Q 037446 157 VFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASFWKT-KRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDE 234 (1165)
Q Consensus 157 LILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~-~~~l~~~-~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDE 234 (1165)
|||+||++|+.||.+.++++.......+..+.|+..... ...+..+ ++|+|+||++|.+.+..+.+.+.++++|||||
T Consensus 102 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDE 181 (237)
T 3bor_A 102 LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 181 (237)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEES
T ss_pred EEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECC
Confidence 999999999999999999987655566777777765433 2333334 89999999999999988778888999999999
Q ss_pred cccccCccchHHHHHHHH-cCCCCCeEEEEccCCCCCh
Q 037446 235 AHRATGNYAYCTAIRELM-SVPVQLRILALTATPGSKQ 271 (1165)
Q Consensus 235 AHrl~~~~~~~~~l~~L~-~~~~~~riL~LSATP~~~~ 271 (1165)
||++.+. ++...+..++ .++...++++||||++...
T Consensus 182 ah~~~~~-~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~ 218 (237)
T 3bor_A 182 ADEMLSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDV 218 (237)
T ss_dssp HHHHHHT-TCHHHHHHHHHHSCTTCEEEEECSSCCHHH
T ss_pred chHhhcc-CcHHHHHHHHHhCCCCCeEEEEEEecCHHH
Confidence 9999874 5666666555 4567789999999997543
No 69
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.91 E-value=9.8e-24 Score=234.27 Aligned_cols=187 Identities=20% Similarity=0.269 Sum_probs=151.3
Q ss_pred CCCCc---cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC-----CC
Q 037446 83 SSFDE---SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF-----PD 153 (1165)
Q Consensus 83 ~sFee---~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~-----~~ 153 (1165)
.+|++ .+++.+++++...||.. ++++|.+++..+.. +++|++++||+|||++|++|+++.+... .+
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~-----~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 126 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTN-----MTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNG 126 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCB-----CCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred CChhHhccccCHHHHHHHHHCCCCC-----CCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCC
Confidence 45666 49999999999999985 45666777776665 8999999999999999999999887652 35
Q ss_pred CeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH-HhhcCCccEEEEcHHHHHHHHHcC-ccCCCCccEEE
Q 037446 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR-ASFWKTKRVFFVTPQVLEKDIQSG-TCLMKYLVCLV 231 (1165)
Q Consensus 154 ~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~-~~l~~~~dIlVaTpq~L~~~l~~~-~~~l~~~~lVV 231 (1165)
.++|||+||++|+.|+.+.+++++......+..+.|+...... ..+..+++|+|+||++|...+... .+.+.++++||
T Consensus 127 ~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lV 206 (262)
T 3ly5_A 127 TGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLV 206 (262)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEE
Confidence 6899999999999999999999887666778888888776543 445567899999999999887764 46788999999
Q ss_pred EcccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChHHHH
Q 037446 232 IDEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQTIQ 275 (1165)
Q Consensus 232 IDEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~~l~ 275 (1165)
|||||++.+. +|...+..+.. ++...++++||||+++....+.
T Consensus 207 iDEah~l~~~-~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~ 250 (262)
T 3ly5_A 207 IDEADRILDV-GFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLA 250 (262)
T ss_dssp ECSHHHHHHT-TCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHH
T ss_pred EcChHHHhhh-hHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHH
Confidence 9999999885 67777777765 5667899999999986654433
No 70
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.91 E-value=2.9e-23 Score=228.66 Aligned_cols=184 Identities=21% Similarity=0.238 Sum_probs=153.3
Q ss_pred CCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCC-CCeEEE
Q 037446 82 GSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFP-DGKIVF 158 (1165)
Q Consensus 82 ~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~-~~rvLI 158 (1165)
..+|++ ++++.+++++...||.. ++++|.+++..+.. +++++.++||+|||++|++++++.+...+ ..++||
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~-----~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~li 116 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTK-----PTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALV 116 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCS-----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEE
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCC-----CCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEE
Confidence 457999 99999999999999875 56778888888776 89999999999999999999998776544 458999
Q ss_pred EecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHH-HHhhcCCccEEEEcHHHHHHHHHc-CccCCCCccEEEEcccc
Q 037446 159 AAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQS-GTCLMKYLVCLVIDEAH 236 (1165)
Q Consensus 159 LvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l~~-~~~~l~~~~lVVIDEAH 236 (1165)
|+||++|+.||.++++++.......+..+.|+..... ...+..+++|+|+||++|.+.+.. ..+.+.++++|||||||
T Consensus 117 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 196 (249)
T 3ber_A 117 LTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD 196 (249)
T ss_dssp ECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh
Confidence 9999999999999999987554566788888877544 344557899999999999998875 45678899999999999
Q ss_pred cccCccchHHHHHHHHc-CCCCCeEEEEccCCCCCh
Q 037446 237 RATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQ 271 (1165)
Q Consensus 237 rl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~ 271 (1165)
++.+. ++...+..++. ++...++++||||++...
T Consensus 197 ~l~~~-~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v 231 (249)
T 3ber_A 197 RILNM-DFETEVDKILKVIPRDRKTFLFSATMTKKV 231 (249)
T ss_dssp HHHHT-TCHHHHHHHHHSSCSSSEEEEEESSCCHHH
T ss_pred hhhcc-ChHHHHHHHHHhCCCCCeEEEEeccCCHHH
Confidence 99875 67777777765 455789999999997553
No 71
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.90 E-value=1.3e-23 Score=237.87 Aligned_cols=186 Identities=15% Similarity=0.068 Sum_probs=151.2
Q ss_pred CCCCCCCc-cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc---CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCC
Q 037446 80 NEGSSFDE-SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF---SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDG 154 (1165)
Q Consensus 80 ~~~~sFee-~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~---rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~ 154 (1165)
....+|++ +|++.+++++..+||..|++ +|.+++..++. +++|++++||+|||++|++|+++.+... ...
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~-----iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~ 163 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSK-----IQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP 163 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCH-----HHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSC
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCCCCH-----HHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCc
Confidence 34568999 99999999999999987665 55677777764 7999999999999999999999887543 334
Q ss_pred eEEEEecChhHHHHHHHHHHHHhCC-CCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHc-CccCCCCccEEEE
Q 037446 155 KIVFAAPSRPLVMQQIEACHNIVGI-PQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQS-GTCLMKYLVCLVI 232 (1165)
Q Consensus 155 rvLILvPtr~La~Q~~~e~~kl~g~-~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~-~~~~l~~~~lVVI 232 (1165)
++|||+||++|+.|+.+.++++... +...+..+.|+...... ...+++|+|+||++|.+++.. +.+.+.++++|||
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG--QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT--CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh--hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 8999999999999999999998754 35667777776654322 235689999999999999865 5667889999999
Q ss_pred cccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCCChH
Q 037446 233 DEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGSKQQ 272 (1165)
Q Consensus 233 DEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~~~ 272 (1165)
||||++.+..+|...+..+.. ++...|+++||||+++...
T Consensus 242 DEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~ 282 (300)
T 3fmo_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVW 282 (300)
T ss_dssp TTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHH
T ss_pred eCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHH
Confidence 999999874578888887776 4667899999999986543
No 72
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.90 E-value=1.7e-22 Score=244.66 Aligned_cols=126 Identities=21% Similarity=0.201 Sum_probs=102.4
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhc
Q 037446 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA 520 (1165)
Q Consensus 441 s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~ 520 (1165)
..|..++++.+.+... .+.++||||++++.++.|+..|...| +++..+|| ++.+.+|..+..+|+.
T Consensus 457 ~eK~~al~~~I~~~~~----~gqpVLVFt~S~e~sE~Ls~~L~~~G--i~~~vLhg--------kq~~rE~~ii~~ag~~ 522 (822)
T 3jux_A 457 KEKYEKIVEEIEKRYK----KGQPVLVGTTSIEKSELLSSMLKKKG--IPHQVLNA--------KYHEKEAEIVAKAGQK 522 (822)
T ss_dssp HHHHHHHHHHHHHHHH----HTCCEEEEESSHHHHHHHHHHHHTTT--CCCEEECS--------CHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHhh----CCCCEEEEECCHHHHHHHHHHHHHCC--CCEEEeeC--------CchHHHHHHHHhCCCC
Confidence 3577788888876543 47899999999999999999999999 88888887 3344444444445554
Q ss_pred CCceEEEEccccccccccc--------CCCEEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHH
Q 037446 521 GGYNVIVATSIGEEGLDIM--------EVDLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFV 582 (1165)
Q Consensus 521 g~~~VLVATda~~eGLDIp--------~vd~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~ 582 (1165)
| .|+|||++++||+||+ +..+||+++.|.+...|+||+||+||.| +|...+++..++..+
T Consensus 523 g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~ 591 (822)
T 3jux_A 523 G--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLL 591 (822)
T ss_dssp T--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHH
T ss_pred C--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHH
Confidence 4 6999999999999998 6679999999999999999999999999 598877777665443
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.6e-23 Score=227.78 Aligned_cols=190 Identities=15% Similarity=0.125 Sum_probs=148.4
Q ss_pred CCCCCCCCCCc-----cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHh
Q 037446 77 EEFNEGSSFDE-----SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRW 150 (1165)
Q Consensus 77 ~~~~~~~sFee-----~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~ 150 (1165)
..+.+..+|++ ++++.+++++...||.. ++++|.+++..+.. +++++.++||+|||++|++|++..+..
T Consensus 19 ~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~-----~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 93 (245)
T 3dkp_A 19 DLPDPIATFQQLDQEYKINSRLLQNILDAGFQM-----PTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ 93 (245)
T ss_dssp SCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCS-----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS
T ss_pred CCCCcccCHHHhhhccCCCHHHHHHHHHCCCCC-----CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 34445557776 79999999999999975 56677888887775 899999999999999999999988754
Q ss_pred C--CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHH--HhhcCCccEEEEcHHHHHHHHHcC--ccCC
Q 037446 151 F--PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKR--ASFWKTKRVFFVTPQVLEKDIQSG--TCLM 224 (1165)
Q Consensus 151 ~--~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~--~~l~~~~dIlVaTpq~L~~~l~~~--~~~l 224 (1165)
. .+.++|||+||++|+.|+.+++.+++......+..+.|+.....+ .....+++|+|+||++|...+... .+.+
T Consensus 94 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 94 PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 2 345899999999999999999999876655666666655432221 122356899999999999998775 4678
Q ss_pred CCccEEEEcccccccCc--cchHHHHHHHHc--CCCCCeEEEEccCCCCCh
Q 037446 225 KYLVCLVIDEAHRATGN--YAYCTAIRELMS--VPVQLRILALTATPGSKQ 271 (1165)
Q Consensus 225 ~~~~lVVIDEAHrl~~~--~~~~~~l~~L~~--~~~~~riL~LSATP~~~~ 271 (1165)
.++++|||||||++.++ .++...+..++. .....++++||||++...
T Consensus 174 ~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v 224 (245)
T 3dkp_A 174 ASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDV 224 (245)
T ss_dssp TTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHH
T ss_pred ccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHH
Confidence 89999999999999863 367777777653 245679999999997543
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.88 E-value=5.4e-22 Score=247.43 Aligned_cols=132 Identities=23% Similarity=0.309 Sum_probs=113.3
Q ss_pred HHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCce
Q 037446 445 SKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN 524 (1165)
Q Consensus 445 ~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~ 524 (1165)
..|++.|..... .+.++||||+++..++.|++.|...| +++..+|| ++++.+|.++++.|+.|+++
T Consensus 426 ~~Ll~~l~~~~~----~~~~vlVf~~t~~~ae~L~~~L~~~g--i~~~~lh~--------~~~~~~R~~~~~~f~~g~~~ 491 (664)
T 1c4o_A 426 LDLMEGIRERAA----RGERTLVTVLTVRMAEELTSFLVEHG--IRARYLHH--------ELDAFKRQALIRDLRLGHYD 491 (664)
T ss_dssp HHHHHHHHHHHH----TTCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECT--------TCCHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHh----cCCEEEEEECCHHHHHHHHHHHHhcC--CCceeecC--------CCCHHHHHHHHHHhhcCCce
Confidence 334444444433 46799999999999999999999998 77766665 89999999999999999999
Q ss_pred EEEEcccccccccccCCCEEEEecc-----CCCHHHHHHHHhhcCCCCCCccceecChhHHHHHHHHHHHH
Q 037446 525 VIVATSIGEEGLDIMEVDLVICFDA-----NVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 525 VLVATda~~eGLDIp~vd~VI~~D~-----p~S~~~yiQriGRagR~GqGkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
|||||+++++|+|+|++++||++|. |++...|+||+||+||.|+|++++++.+....+...|++..
T Consensus 492 VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~~~~~~i~~~~ 562 (664)
T 1c4o_A 492 CLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIEETN 562 (664)
T ss_dssp EEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCHHHHHHHHHHH
T ss_pred EEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCCCEEEEEEcCCCHHHHHHHHHHH
Confidence 9999999999999999999999998 99999999999999999999999998876665555555443
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.87 E-value=5.8e-22 Score=247.03 Aligned_cols=131 Identities=25% Similarity=0.410 Sum_probs=111.9
Q ss_pred HHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCce
Q 037446 445 SKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN 524 (1165)
Q Consensus 445 ~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~ 524 (1165)
..++..|..... .+.++||||+++..++.|++.|...| +++..+|| ++++.+|.++++.|+.|++.
T Consensus 432 ~~Ll~~l~~~~~----~~~~vlVf~~t~~~ae~L~~~L~~~g--i~~~~lh~--------~~~~~~R~~~l~~f~~g~~~ 497 (661)
T 2d7d_A 432 DDLIGEIQARIE----RNERVLVTTLTKKMSEDLTDYLKEIG--IKVNYLHS--------EIKTLERIEIIRDLRLGKYD 497 (661)
T ss_dssp HHHHHHHHHHHT----TTCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECT--------TCCHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHh----cCCeEEEEECCHHHHHHHHHHHHhcC--CCeEEEeC--------CCCHHHHHHHHHHHhcCCeE
Confidence 334444544433 46799999999999999999999998 77776665 78999999999999999999
Q ss_pred EEEEcccccccccccCCCEEEEecc-----CCCHHHHHHHHhhcCCCCCCccceecChhHHHHHHHHHHH
Q 037446 525 VIVATSIGEEGLDIMEVDLVICFDA-----NVSPLRMIQRMGRTGRKHDGRIPHIFKPEVQFVELSIEQY 589 (1165)
Q Consensus 525 VLVATda~~eGLDIp~vd~VI~~D~-----p~S~~~yiQriGRagR~GqGkiv~v~~~d~~~~~~~Ie~~ 589 (1165)
|||||+++++|+|+|++++||++|. |.+...|+||+||+||.+.|++++++.+....+...|++.
T Consensus 498 VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~~~~~~i~~~ 567 (661)
T 2d7d_A 498 VLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKSMEIAINET 567 (661)
T ss_dssp EEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTSTTCEEEEECSSCCHHHHHHHHHH
T ss_pred EEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCCCCEEEEEEeCCCHHHHHHHHHH
Confidence 9999999999999999999999998 9999999999999999988998888887655555555443
No 76
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.85 E-value=5.7e-21 Score=196.60 Aligned_cols=140 Identities=26% Similarity=0.461 Sum_probs=123.5
Q ss_pred ccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHH
Q 037446 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVL 515 (1165)
Q Consensus 436 ~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il 515 (1165)
.....+.|+..|.++|... .+.++||||+++..++.+++.|...| +.+..+|| +|++.+|..++
T Consensus 15 ~~~~~~~K~~~L~~ll~~~------~~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~hg--------~~~~~~r~~~~ 78 (163)
T 2hjv_A 15 IQVREENKFSLLKDVLMTE------NPDSCIIFCRTKEHVNQLTDELDDLG--YPCDKIHG--------GMIQEDRFDVM 78 (163)
T ss_dssp EECCGGGHHHHHHHHHHHH------CCSSEEEECSSHHHHHHHHHHHHHTT--CCEEEECT--------TSCHHHHHHHH
T ss_pred EECChHHHHHHHHHHHHhc------CCCcEEEEECCHHHHHHHHHHHHHcC--CcEEEEeC--------CCCHHHHHHHH
Confidence 3445578999999988663 36799999999999999999999988 77777776 89999999999
Q ss_pred HHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHh
Q 037446 516 EKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVS 591 (1165)
Q Consensus 516 ~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~ 591 (1165)
++|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+ |.++.++.+.+......+++.+.
T Consensus 79 ~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 79 NEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp HHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred HHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999995 88888888777666667777653
No 77
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.84 E-value=1.1e-20 Score=232.54 Aligned_cols=132 Identities=15% Similarity=0.063 Sum_probs=103.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCC
Q 037446 100 KTWIYPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGI 179 (1165)
Q Consensus 100 ~g~~~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~ 179 (1165)
.|+ .|+++| ..++..++..+ |+.+.||+|||++|.+|++.... .+..++||+||+.||.|..+.+..++..
T Consensus 76 lG~-~Pt~VQ-----~~~ip~LlqG~-IaeakTGeGKTLvf~Lp~~L~aL--~G~qv~VvTPTreLA~Qdae~m~~l~~~ 146 (997)
T 2ipc_A 76 LGM-RHFDVQ-----LIGGAVLHEGK-IAEMKTGEGKTLVATLAVALNAL--TGKGVHVVTVNDYLARRDAEWMGPVYRG 146 (997)
T ss_dssp TCC-CCCHHH-----HHHHHHHHTTS-EEECCSTHHHHHHHHHHHHHHHT--TCSCCEEEESSHHHHHHHHHHHHHHHHT
T ss_pred hCC-CCcHHH-----HhhcccccCCc-eeeccCCCchHHHHHHHHHHHHH--hCCCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 566 666665 45555555545 99999999999999999964332 3457999999999999999999988877
Q ss_pred CCceEEEEeCCCChHHHHhhcCCccEEEEcHHHH-HHHHHcCc------cCCC---CccEEEEcccccccCc
Q 037446 180 PQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVL-EKDIQSGT------CLMK---YLVCLVIDEAHRATGN 241 (1165)
Q Consensus 180 ~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L-~~~l~~~~------~~l~---~~~lVVIDEAHrl~~~ 241 (1165)
.++.+..++|+.+...+... .+++|+|+||+.| .+++..+. +.+. .+.++||||||+++.+
T Consensus 147 lGLsv~~i~Gg~~~~~r~~a-y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD 217 (997)
T 2ipc_A 147 LGLSVGVIQHASTPAERRKA-YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID 217 (997)
T ss_dssp TTCCEEECCTTCCHHHHHHH-HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS
T ss_pred cCCeEEEEeCCCCHHHHHHH-cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh
Confidence 77889999999886655443 4689999999999 66665542 4566 8999999999998753
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.84 E-value=1.2e-20 Score=196.14 Aligned_cols=140 Identities=18% Similarity=0.225 Sum_probs=121.3
Q ss_pred hccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHH
Q 037446 435 ISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAV 514 (1165)
Q Consensus 435 ~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~i 514 (1165)
+.......|+..|.++|... .+.++||||+++..++.++..|...| +.+..+|| +|++.+|..+
T Consensus 10 ~~~~~~~~K~~~L~~ll~~~------~~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~hg--------~~~~~~r~~~ 73 (172)
T 1t5i_A 10 YVKLKDNEKNRKLFDLLDVL------EFNQVVIFVKSVQRCIALAQLLVEQN--FPAIAIHR--------GMPQEERLSR 73 (172)
T ss_dssp EEECCGGGHHHHHHHHHHHS------CCSSEEEECSSHHHHHHHHHHHHHTT--CCEEEECT--------TSCHHHHHHH
T ss_pred EEECChHHHHHHHHHHHHhC------CCCcEEEEECCHHHHHHHHHHHHhcC--CCEEEEEC--------CCCHHHHHHH
Confidence 33445578999999988653 46799999999999999999999988 77777776 7999999999
Q ss_pred HHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-CccceecChh-HHHHHHHHHHHH
Q 037446 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFKPE-VQFVELSIEQYV 590 (1165)
Q Consensus 515 l~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d-~~~~~~~Ie~~l 590 (1165)
++.|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+ |.+++++.+. .......+++.+
T Consensus 74 ~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~ 151 (172)
T 1t5i_A 74 YQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRF 151 (172)
T ss_dssp HHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999995 8887777654 445555666665
No 79
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.83 E-value=4.7e-20 Score=198.22 Aligned_cols=138 Identities=28% Similarity=0.437 Sum_probs=123.6
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHH
Q 037446 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEK 517 (1165)
Q Consensus 438 ~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~ 517 (1165)
.....|+..|.+++... .+.++||||+++..++.++..|...| +.+..+|| +|++.+|..+++.
T Consensus 13 ~~~~~k~~~l~~ll~~~------~~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~lhg--------~~~~~~r~~~~~~ 76 (212)
T 3eaq_A 13 APVRGRLEVLSDLLYVA------SPDRAMVFTRTKAETEEIAQGLLRLG--HPAQALHG--------DLSQGERERVLGA 76 (212)
T ss_dssp CCTTSHHHHHHHHHHHH------CCSCEEEECSSHHHHHHHHHHHHHHT--CCEEEECS--------SSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHcC--CCEEEEEC--------CCCHHHHHHHHHH
Confidence 34578999999988643 36799999999999999999999988 77777776 8999999999999
Q ss_pred HhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHHHHHHHHHHh
Q 037446 518 FRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVELSIEQYVS 591 (1165)
Q Consensus 518 Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~~~~Ie~~l~ 591 (1165)
|++|+.+|||||+++++|||+|++++||+||+|+++..|+||+||+||.| .|.+++++.+.+......+++.+.
T Consensus 77 f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 151 (212)
T 3eaq_A 77 FRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 151 (212)
T ss_dssp HHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHS
T ss_pred HHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999 588999998887777777877764
No 80
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=199.83 Aligned_cols=161 Identities=23% Similarity=0.302 Sum_probs=118.2
Q ss_pred CCCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhC----CCCeEEEEecChhHHHH-HHHHHHHHhC
Q 037446 105 PVNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWF----PDGKIVFAAPSRPLVMQ-QIEACHNIVG 178 (1165)
Q Consensus 105 Pt~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~----~~~rvLILvPtr~La~Q-~~~e~~kl~g 178 (1165)
...++|++||.+++..+.. +++++.++||+|||+++++++...+... ..+++||++|+++|+.| |.+.+.++.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 3456899999999998886 8999999999999999999998876542 36789999999999999 8888888765
Q ss_pred CCCceEEEEeCCCChHH-HHhhcCCccEEEEcHHHHHHHHHcCc------cCCCCccEEEEcccccccCccchHHHHHHH
Q 037446 179 IPQEWTIDMTGQISPTK-RASFWKTKRVFFVTPQVLEKDIQSGT------CLMKYLVCLVIDEAHRATGNYAYCTAIREL 251 (1165)
Q Consensus 179 ~~~~~v~~l~G~~~~~~-~~~l~~~~dIlVaTpq~L~~~l~~~~------~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L 251 (1165)
. ...+..+.|+..... ...+...++|+|+||++|...+.... ..+.++++|||||||++.....+...+..+
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHH
Confidence 4 455777777654322 22333468999999999999887643 567889999999999998754566666555
Q ss_pred HcC--------------CCCCeEEEEccC
Q 037446 252 MSV--------------PVQLRILALTAT 266 (1165)
Q Consensus 252 ~~~--------------~~~~riL~LSAT 266 (1165)
... ....++|+||||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 421 156789999998
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=198.39 Aligned_cols=144 Identities=26% Similarity=0.379 Sum_probs=111.2
Q ss_pred hhccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHH
Q 037446 434 SISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQA 513 (1165)
Q Consensus 434 ~~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~ 513 (1165)
.+.....+.|+..|.++|.... .+.++||||+++..++.++..|...| +.+..++| +|++.+|..
T Consensus 23 ~~~~v~~~~K~~~L~~ll~~~~-----~~~k~lVF~~~~~~~~~l~~~L~~~g--~~~~~lhg--------~~~~~~r~~ 87 (185)
T 2jgn_A 23 KVVWVEESDKRSFLLDLLNATG-----KDSLTLVFVETKKGADSLEDFLYHEG--YACTSIHG--------DRSQRDREE 87 (185)
T ss_dssp EEEECCGGGHHHHHHHHHHHC------CCSCEEEEESCHHHHHHHHHHHHHTT--CCEEEEC----------------CH
T ss_pred EEEEeCcHHHHHHHHHHHHhcC-----CCCeEEEEECCHHHHHHHHHHHHHcC--CceEEEeC--------CCCHHHHHH
Confidence 3344456789999999887632 47899999999999999999999988 77777776 789999999
Q ss_pred HHHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHhc
Q 037446 514 VLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVSR 592 (1165)
Q Consensus 514 il~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~~ 592 (1165)
++++|++|+.+|||||+++++|+|+|++++||+||+||++..|+||+||+||.|+ |.+++++.+........+++.+..
T Consensus 88 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 88 ALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 167 (185)
T ss_dssp HHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred HHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999994 888888887666555566666643
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.82 E-value=2.5e-20 Score=197.13 Aligned_cols=141 Identities=26% Similarity=0.413 Sum_probs=118.5
Q ss_pred hccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHH
Q 037446 435 ISHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAV 514 (1165)
Q Consensus 435 ~~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~i 514 (1165)
+.......|+..|.++|.. .+.++||||+++..++.++..|...| +.+..+|| +|++.+|.++
T Consensus 34 ~~~~~~~~K~~~L~~~l~~-------~~~~~lVF~~~~~~~~~l~~~L~~~g--~~~~~lhg--------~~~~~~R~~~ 96 (191)
T 2p6n_A 34 VEYVKEEAKMVYLLECLQK-------TPPPVLIFAEKKADVDAIHEYLLLKG--VEAVAIHG--------GKDQEERTKA 96 (191)
T ss_dssp EEECCGGGHHHHHHHHHTT-------SCSCEEEECSCHHHHHHHHHHHHHHT--CCEEEECT--------TSCHHHHHHH
T ss_pred EEEcChHHHHHHHHHHHHh-------CCCCEEEEECCHHHHHHHHHHHHHcC--CcEEEEeC--------CCCHHHHHHH
Confidence 3344557899888888854 24689999999999999999999888 77777776 7999999999
Q ss_pred HHHHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-CccceecChh-HHHHHHHHHHHHhc
Q 037446 515 LEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFKPE-VQFVELSIEQYVSR 592 (1165)
Q Consensus 515 l~~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d-~~~~~~~Ie~~l~~ 592 (1165)
++.|++|+.+|||||+++++|||+|++++||+||+|+++..|+||+||+||.|+ |.++.++.+. .......+++.+..
T Consensus 97 l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~ 176 (191)
T 2p6n_A 97 IEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLE 176 (191)
T ss_dssp HHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999995 8877777754 45555567766643
No 83
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=5.7e-20 Score=191.32 Aligned_cols=134 Identities=19% Similarity=0.335 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcC
Q 037446 442 PKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAG 521 (1165)
Q Consensus 442 ~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g 521 (1165)
.|+..|.+++... .+.++||||+++..++.++..|...| +.+..+|| +|++.+|..+++.|++|
T Consensus 20 ~K~~~L~~ll~~~------~~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~~g--------~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 20 DKYQALCNIYGSI------TIGQAIIFCQTRRNAKWLTVEMIQDG--HQVSLLSG--------ELTVEQRASIIQRFRDG 83 (175)
T ss_dssp HHHHHHHHHHTTS------CCSEEEEECSCHHHHHHHHHHHHTTT--CCEEEECS--------SCCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhC------CCCCEEEEECCHHHHHHHHHHHHHcC--CcEEEEeC--------CCCHHHHHHHHHHHHcC
Confidence 4888888877432 46799999999999999999999988 77777776 89999999999999999
Q ss_pred CceEEEEcccccccccccCCCEEEEeccC------CCHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHHh
Q 037446 522 GYNVIVATSIGEEGLDIMEVDLVICFDAN------VSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYVS 591 (1165)
Q Consensus 522 ~~~VLVATda~~eGLDIp~vd~VI~~D~p------~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l~ 591 (1165)
+.+|||||+++++|+|+|++++||+||+| +++..|+||+||+||.|+ |.++.++.++.......+++.+.
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 160 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN 160 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhc
Confidence 99999999999999999999999999999 899999999999999985 88888888776655566766653
No 84
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.82 E-value=2.2e-20 Score=192.49 Aligned_cols=132 Identities=21% Similarity=0.370 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCC
Q 037446 443 KLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGG 522 (1165)
Q Consensus 443 Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~ 522 (1165)
|+..|.+++... .+.++||||+++..++.++..|...+ +.+..+|| +|++.+|..+++.|++|+
T Consensus 17 K~~~l~~ll~~~------~~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~~~--------~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 17 KYECLTDLYDSI------SVTQAVIFCNTRRKVEELTTKLRNDK--FTVSAIYS--------DLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp HHHHHHHHHHHT------TCSCEEEEESSHHHHHHHHHHHHHTT--CCEEEECT--------TSCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhC------CCCCEEEEECCHHHHHHHHHHHHHcC--CCEEEEEC--------CCCHHHHHHHHHHHHcCC
Confidence 899999888653 46799999999999999999999988 77777776 899999999999999999
Q ss_pred ceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHHH
Q 037446 523 YNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQYV 590 (1165)
Q Consensus 523 ~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~l 590 (1165)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+ |.++.++.++.......+++++
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~ 149 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 149 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHS
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999995 8877777776655555666655
No 85
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.81 E-value=6.5e-20 Score=205.39 Aligned_cols=163 Identities=20% Similarity=0.252 Sum_probs=128.3
Q ss_pred CCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEE
Q 037446 108 VPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID 186 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~ 186 (1165)
+++++||.+++..++. +++|++++||+|||++++.++...+.. ..+++|||+|+++|+.||.+++.++...+...+..
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 6899999999998776 689999999999999999988877654 34589999999999999999999987666667777
Q ss_pred EeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHc-CCCCCeEEEEcc
Q 037446 187 MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTA 265 (1165)
Q Consensus 187 l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSA 265 (1165)
+.|+..... ..+...+|+|+||+++.+. ....+.++++|||||||++.+. . +..++. +....++|+|||
T Consensus 191 ~~~~~~~~~--~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~~-~----~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 191 IGGGASKDD--KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATGK-S----ISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTT--CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCHH-H----HHHHTTTCTTCCEEEEECS
T ss_pred EeCCCcchh--hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCcc-c----HHHHHHHhhcCCeEEEEeC
Confidence 777765432 3345789999999988653 2234678999999999999863 3 344443 445789999999
Q ss_pred CCCCChHHHHHHHHhh
Q 037446 266 TPGSKQQTIQHIIDNL 281 (1165)
Q Consensus 266 TP~~~~~~l~~Li~~L 281 (1165)
||.+....+..++..+
T Consensus 261 Tp~~~~~~~~~l~~l~ 276 (282)
T 1rif_A 261 SLRDGKANIMQYVGMF 276 (282)
T ss_dssp SCCTTSTTHHHHHHHH
T ss_pred CCCCcchHHHHHHHhc
Confidence 9988776676666543
No 86
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.79 E-value=2.7e-19 Score=202.02 Aligned_cols=140 Identities=28% Similarity=0.439 Sum_probs=121.9
Q ss_pred cCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHH
Q 037446 437 HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLE 516 (1165)
Q Consensus 437 ~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~ 516 (1165)
......|+..|.+++... .+.++||||+++..++.++..|...| +.+..+|| +|++.+|..+++
T Consensus 9 ~~~~~~K~~~L~~ll~~~------~~~~~LVF~~t~~~~~~l~~~L~~~g--~~~~~lhg--------~l~~~~r~~~~~ 72 (300)
T 3i32_A 9 PAPVRGRLEVLSDLLYVA------SPDRAMVFTRTKAETEEIAQGLLRLG--HPAQALHG--------DMSQGERERVMG 72 (300)
T ss_dssp ECCSSSHHHHHHHHHHHH------CCSSEEEECSSHHHHHHHHHHHHTTT--CCEEEECS--------CCCTHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHhc------CCCCEEEEECCHHHHHHHHHHHHhCC--CCEEEEeC--------CCCHHHHHHHHH
Confidence 345678999999998654 37899999999999999999999888 77777776 899999999999
Q ss_pred HHhcCCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCC-CCccceecChhHHHHHHHHHHHHhc
Q 037446 517 KFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKH-DGRIPHIFKPEVQFVELSIEQYVSR 592 (1165)
Q Consensus 517 ~Fr~g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~G-qGkiv~v~~~d~~~~~~~Ie~~l~~ 592 (1165)
.|++|+.+|||||+++++|||+|++++||+||.|+++..|+||+||+||.| .|.+++++.+........+++.+..
T Consensus 73 ~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 73 AFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp HHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred HhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999 5999999988877777788877643
No 87
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.78 E-value=3.4e-18 Score=190.60 Aligned_cols=169 Identities=19% Similarity=0.263 Sum_probs=114.1
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhc-CCCccceeeecccccccCCCCCHHHHHHHHH
Q 037446 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATI-GDLVKATEFIGQSSGKASKGQSQKVQQAVLE 516 (1165)
Q Consensus 438 ~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~-g~~i~~~~l~G~~~g~~~ggms~~eR~~il~ 516 (1165)
...+.|+..|.++|.+... .+.|+||||+++..++.|...|... | +.+..++| ++++.+|.++++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~----~~~kvlIFs~~~~~~~~l~~~L~~~~g--~~~~~l~G--------~~~~~~R~~~i~ 157 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALD----EGDKIAIFTQFVDMGKIIRNIIEKELN--TEVPFLYG--------ELSKKERDDIIS 157 (271)
T ss_dssp STTCHHHHHHHHHHHHHHH----TTCCEEEEESCHHHHHHHHHHHHHHHC--SCCCEECT--------TSCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHh----CCCeEEEEeccHHHHHHHHHHHHHhcC--CcEEEEEC--------CCCHHHHHHHHH
Confidence 3468999999999988765 5789999999999999999999875 7 77777776 789999999999
Q ss_pred HHhcC-Cce-EEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCCCccceecCh-hHHHHHHHHHHHHhcC
Q 037446 517 KFRAG-GYN-VIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHIFKP-EVQFVELSIEQYVSRG 593 (1165)
Q Consensus 517 ~Fr~g-~~~-VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~GqGkiv~v~~~-d~~~~~~~Ie~~l~~~ 593 (1165)
+|++| ... +|++|+++++|||++.+++||+||+|||+..|+||+||++|.||.+.+.+|.. ....+...|.+.+..+
T Consensus 158 ~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K 237 (271)
T 1z5z_A 158 KFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFK 237 (271)
T ss_dssp HHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHC
T ss_pred HhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHH
Confidence 99988 666 78999999999999999999999999999999999999999998664444321 1111223343444333
Q ss_pred CcccccccccccHHHhhcCHHHHHHHH
Q 037446 594 KKVKDDHAITTPIFKEKLTAAETDLIA 620 (1165)
Q Consensus 594 ~~l~~~~~~~~~~f~~~l~~~e~~~l~ 620 (1165)
..+..............++.++++.+.
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~l~~l~ 264 (271)
T 1z5z_A 238 RSLFKDIISSGDSWITELSTEELRKVI 264 (271)
T ss_dssp HHHHTTGGGGTTHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHccCchhhhcCCHHHHHHHh
Confidence 333222222222333367777764443
No 88
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.65 E-value=1.1e-20 Score=195.88 Aligned_cols=133 Identities=25% Similarity=0.396 Sum_probs=114.2
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhc
Q 037446 441 SPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRA 520 (1165)
Q Consensus 441 s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~ 520 (1165)
..|+..|.+++... .+.++||||+++..++.++..|...| +.+..+|| +|++.+|..++++|++
T Consensus 15 ~~k~~~l~~ll~~~------~~~~~iVF~~~~~~~~~l~~~L~~~~--~~~~~~~g--------~~~~~~r~~~~~~f~~ 78 (170)
T 2yjt_D 15 EHKTALLVHLLKQP------EATRSIVFVRKRERVHELANWLREAG--INNCYLEG--------EMVQGKRNEAIKRLTE 78 (170)
Confidence 67888888877542 46799999999999999999998887 66666665 8999999999999999
Q ss_pred CCceEEEEcccccccccccCCCEEEEeccCCCHHHHHHHHhhcCCCCC-CccceecChhHHHHHHHHHHH
Q 037446 521 GGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHD-GRIPHIFKPEVQFVELSIEQY 589 (1165)
Q Consensus 521 g~~~VLVATda~~eGLDIp~vd~VI~~D~p~S~~~yiQriGRagR~Gq-Gkiv~v~~~d~~~~~~~Ie~~ 589 (1165)
|+.+|||||+++++|+|+|++++||+||+||++..|+||+||+||.|+ |.+++++.+........+++.
T Consensus 79 g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 148 (170)
T 2yjt_D 79 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRY 148 (170)
Confidence 999999999999999999999999999999999999999999999995 777777776555444445443
No 89
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.74 E-value=2.2e-17 Score=180.43 Aligned_cols=140 Identities=25% Similarity=0.318 Sum_probs=110.9
Q ss_pred CCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCce-E
Q 037446 107 NVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEW-T 184 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~-v 184 (1165)
.+++++||.+++..+.. +++|++++||+|||++++.++... .+++||++|+++|+.||.+++.+ ++ .. +
T Consensus 91 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~-~~---~~~v 161 (237)
T 2fz4_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-FG---EEYV 161 (237)
T ss_dssp CCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGG-GC---GGGE
T ss_pred CCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHh-CC---CCeE
Confidence 46899999999998876 669999999999999998887653 57899999999999999999998 44 34 6
Q ss_pred EEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEc
Q 037446 185 IDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALT 264 (1165)
Q Consensus 185 ~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LS 264 (1165)
..+.|+.. ...+|+|+||+.+...... ...++++|||||||++.+. .+. .+.......++|+||
T Consensus 162 ~~~~g~~~--------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~-~~~----~i~~~~~~~~~l~LS 225 (237)
T 2fz4_A 162 GEFSGRIK--------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAE-SYV----QIAQMSIAPFRLGLT 225 (237)
T ss_dssp EEESSSCB--------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTT-THH----HHHHTCCCSEEEEEE
T ss_pred EEEeCCCC--------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCCh-HHH----HHHHhccCCEEEEEe
Confidence 67777654 3579999999999876542 2356899999999999874 553 344444567889999
Q ss_pred cCCCCCh
Q 037446 265 ATPGSKQ 271 (1165)
Q Consensus 265 ATP~~~~ 271 (1165)
|||.+.+
T Consensus 226 ATp~r~D 232 (237)
T 2fz4_A 226 ATFERED 232 (237)
T ss_dssp ESCC---
T ss_pred cCCCCCC
Confidence 9997654
No 90
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.70 E-value=2.4e-16 Score=192.47 Aligned_cols=123 Identities=21% Similarity=0.194 Sum_probs=85.7
Q ss_pred CCChHHHHHHHHHhh-----cCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCc
Q 037446 108 VPVRDYQFAITKTAL-----FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll-----~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~ 182 (1165)
+++|++|.+++..+. ++++++.+|||+|||++|++|++.. .++++|++||++|+.|+.+++.++ +.
T Consensus 6 ~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----~~~~~~~~~t~~l~~q~~~~~~~l-~~--- 76 (540)
T 2vl7_A 6 LQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----KKKVLIFTRTHSQLDSIYKNAKLL-GL--- 76 (540)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----TCEEEEEESCHHHHHHHHHHHGGG-TC---
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----CCcEEEEcCCHHHHHHHHHHHHhc-CC---
Confidence 378889998766543 3789999999999999999998764 579999999999999999998873 32
Q ss_pred eEEEEeCCCCh---------------------------------HHH---------------HhhcCCccEEEEcHHHHH
Q 037446 183 WTIDMTGQISP---------------------------------TKR---------------ASFWKTKRVFFVTPQVLE 214 (1165)
Q Consensus 183 ~v~~l~G~~~~---------------------------------~~~---------------~~l~~~~dIlVaTpq~L~ 214 (1165)
.+..+.|.... ..+ ......++|||+||..|.
T Consensus 77 ~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~ 156 (540)
T 2vl7_A 77 KTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLF 156 (540)
T ss_dssp CEEEC---------------------------------------------------------CTTGGGCSEEEEETHHHH
T ss_pred cEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhc
Confidence 23333332110 000 111245799999999999
Q ss_pred HHHHcCcc-------CCCCccEEEEccccccc
Q 037446 215 KDIQSGTC-------LMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 215 ~~l~~~~~-------~l~~~~lVVIDEAHrl~ 239 (1165)
+....+.+ .+....+|||||||++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 157 QKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp SHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred CHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 86544322 24567899999999993
No 91
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.64 E-value=2.5e-16 Score=171.60 Aligned_cols=155 Identities=19% Similarity=0.224 Sum_probs=115.0
Q ss_pred CCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCC---CCeEEEEecChhHHHHHHHHHHHHhCCCC-c
Q 037446 108 VPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFP---DGKIVFAAPSRPLVMQQIEACHNIVGIPQ-E 182 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~---~~rvLILvPtr~La~Q~~~e~~kl~g~~~-~ 182 (1165)
+.++++|.+++..+.. +++++.++||+|||.++.++++..+.... ..+++|++|+++|+.|+.+.+...++... .
T Consensus 60 ~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 60 LPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp SGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred CChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCc
Confidence 4577889999998886 77999999999999988888877654332 34899999999999999999987766432 1
Q ss_pred eEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccc-cCccchH-HHHHHHHcCCCCCeE
Q 037446 183 WTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRA-TGNYAYC-TAIRELMSVPVQLRI 260 (1165)
Q Consensus 183 ~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl-~~~~~~~-~~l~~L~~~~~~~ri 260 (1165)
.++.-... .......+.+|+|+||++|.+.+.. .+.++++|||||||++ ... ++. ..++.+.......++
T Consensus 140 ~~g~~~~~----~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~-~~~~~~l~~i~~~~~~~~~ 211 (235)
T 3llm_A 140 SCGYSVRF----ESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINT-DFLLVVLRDVVQAYPEVRI 211 (235)
T ss_dssp SEEEEETT----EEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHH-HHHHHHHHHHHHHCTTSEE
T ss_pred eEEEeech----hhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcch-HHHHHHHHHHHhhCCCCeE
Confidence 12111100 0111124578999999999998875 4788999999999985 332 444 566777766667899
Q ss_pred EEEccCCCCC
Q 037446 261 LALTATPGSK 270 (1165)
Q Consensus 261 L~LSATP~~~ 270 (1165)
++||||++..
T Consensus 212 il~SAT~~~~ 221 (235)
T 3llm_A 212 VLMSATIDTS 221 (235)
T ss_dssp EEEECSSCCH
T ss_pred EEEecCCCHH
Confidence 9999999754
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.48 E-value=6.7e-13 Score=164.21 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHHhh-----cCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCc
Q 037446 108 VPVRDYQFAITKTAL-----FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll-----~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~ 182 (1165)
+++|++|.+++..+. ++++++.+|||+|||++|++|++..+.. .+.+++|++||++|+.|+.+++.++......
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-RKLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 368999999987553 3789999999999999999999888654 3578999999999999999999886432233
Q ss_pred eEEEEeC
Q 037446 183 WTIDMTG 189 (1165)
Q Consensus 183 ~v~~l~G 189 (1165)
.+..+.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 4444433
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.31 E-value=2e-12 Score=158.30 Aligned_cols=128 Identities=20% Similarity=0.131 Sum_probs=97.3
Q ss_pred CCChHHHHHHHHHhh-----cCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCc
Q 037446 108 VPVRDYQFAITKTAL-----FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQE 182 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll-----~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~ 182 (1165)
+++|++|.+++..+. ++++++.+|||+|||++|++|++. ...+++|++||++|+.|+.+++..+......
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-----~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-----VKPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-----HCSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-----CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 478999999877554 278999999999999999999987 3579999999999999999999886544455
Q ss_pred eEEEEeCCCCh---------------------------------HH-H------------------HhhcCCccEEEEcH
Q 037446 183 WTIDMTGQISP---------------------------------TK-R------------------ASFWKTKRVFFVTP 210 (1165)
Q Consensus 183 ~v~~l~G~~~~---------------------------------~~-~------------------~~l~~~~dIlVaTp 210 (1165)
.+..+.|.... .. . ......++|||+||
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 66666663210 00 0 12234689999999
Q ss_pred HHHHHHHHcCccCC-CCccEEEEcccccccC
Q 037446 211 QVLEKDIQSGTCLM-KYLVCLVIDEAHRATG 240 (1165)
Q Consensus 211 q~L~~~l~~~~~~l-~~~~lVVIDEAHrl~~ 240 (1165)
..|.+...+..+.+ ....+|||||||++.+
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99998765443332 4677999999999976
No 94
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.47 E-value=3.9e-07 Score=102.49 Aligned_cols=117 Identities=19% Similarity=0.152 Sum_probs=85.8
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHh
Q 037446 440 QSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFR 519 (1165)
Q Consensus 440 ~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr 519 (1165)
.++|+..|-++|..+.. .+.|+|||+++.++.+.|..+|...+ +.+.++.|.. ... +++ -.
T Consensus 107 ~SGKf~~L~~LL~~l~~----~~~kVLIfsq~t~~LDilE~~l~~~~--~~y~RlDG~~--------~~~-~~k----~~ 167 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQE----YETETAIVCRPGRTMDLLEALLLGNK--VHIKRYDGHS--------IKS-AAA----AN 167 (328)
T ss_dssp TCHHHHHHHHHHHHHTT----SCEEEEEEECSTHHHHHHHHHHTTSS--CEEEESSSCC--------C------------
T ss_pred cCccHHHHHHHHHHHHh----CCCEEEEEECChhHHHHHHHHHhcCC--CceEeCCCCc--------hhh-hhh----cc
Confidence 58999999999987654 68999999999999999999998877 8888898842 111 111 12
Q ss_pred cCCceEEEEccccccccc-----ccCCCEEEEeccCCCHHHH-HHHHhhcCCCC--CCccceec
Q 037446 520 AGGYNVIVATSIGEEGLD-----IMEVDLVICFDANVSPLRM-IQRMGRTGRKH--DGRIPHIF 575 (1165)
Q Consensus 520 ~g~~~VLVATda~~eGLD-----Ip~vd~VI~~D~p~S~~~y-iQriGRagR~G--qGkiv~v~ 575 (1165)
+....+.+.|.+++-|+| +..++.||.||+.||+..- +|++.|++|.| |++-+.++
T Consensus 168 ~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~ 231 (328)
T 3hgt_A 168 DFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIV 231 (328)
T ss_dssp CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEE
T ss_pred cCCceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEE
Confidence 445555555778888886 6889999999999999986 99999999994 56655444
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.85 E-value=2.5e-05 Score=96.41 Aligned_cols=66 Identities=18% Similarity=0.111 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhhc-CCeEEEcCCCchHHHH--HHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHH
Q 037446 111 RDYQFAITKTALF-SNTLVALPTGLGKTLI--AAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNI 176 (1165)
Q Consensus 111 r~yQ~eal~~ll~-rnvIl~a~TGsGKTL~--a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl 176 (1165)
.+.|.+++..++. +.+++.+++|||||.+ ++++++..+....+.++++++||..++.+..+.+...
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHH
Confidence 3568888887776 6789999999999954 4454444332234458999999999999988877654
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.68 E-value=7.7e-05 Score=92.83 Aligned_cols=65 Identities=23% Similarity=0.189 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHhhc-CC-eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 109 PVRDYQFAITKTALF-SN-TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-rn-vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
.|++.|.+|+..++. ++ .||.+|.|||||.+.+-.|.+++.. +.++|+++||..-+++..+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~--~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ--GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEcCchHHHHHHHHHHHh
Confidence 588999999999876 33 7899999999999988888777763 56899999999999998888765
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.61 E-value=0.00023 Score=88.21 Aligned_cols=67 Identities=31% Similarity=0.419 Sum_probs=54.4
Q ss_pred CCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 108 VPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
..+.+.|.+++..++. .-.+|.+|+|+|||.+....+.+++. ..+.++|+++||...+.+..+.+.+
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~-~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLAR-QGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHT-SSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 3578999999998876 45788999999999987766655543 3567899999999999998888765
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00036 Score=88.62 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=55.5
Q ss_pred CCChHHHHHHHHHhhcCC-eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHH
Q 037446 108 VPVRDYQFAITKTALFSN-TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNI 176 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~rn-vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl 176 (1165)
..+.+.|.+++..++.+. .+|.++.|||||.+....+.+++.. ++.++|+++||...+.+..+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 357899999999987644 7899999999999877666655442 4578999999999999998888764
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.36 E-value=0.00057 Score=86.72 Aligned_cols=67 Identities=31% Similarity=0.419 Sum_probs=53.9
Q ss_pred CCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 108 VPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
..+.+.|.+++..++. .-.+|.++.|+|||.+....+..++. ..+.++|+++||...+.+..+.+.+
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~-~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLAR-QGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHT-TCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 4578999999998876 45789999999999987666655543 3567899999999888888888765
No 100
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.16 E-value=0.0013 Score=76.19 Aligned_cols=157 Identities=17% Similarity=0.225 Sum_probs=94.1
Q ss_pred CCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhC-CCC-c
Q 037446 106 VNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVG-IPQ-E 182 (1165)
Q Consensus 106 t~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g-~~~-~ 182 (1165)
.++.+.+||..++..+.. +-+++..+-+.|||.+.+..++..+...++..+++++|++.-+..+.+.+..++. .+. .
T Consensus 160 ~p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll 239 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL 239 (385)
T ss_dssp EECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTT
T ss_pred CCCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhh
Confidence 457899999999987644 5588999999999998777766654555667899999999988888887777653 121 0
Q ss_pred --eEEEEeCCCChHHHHhhcCCccEEEEc--HHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCC
Q 037446 183 --WTIDMTGQISPTKRASFWKTKRVFFVT--PQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQL 258 (1165)
Q Consensus 183 --~v~~l~G~~~~~~~~~l~~~~dIlVaT--pq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~ 258 (1165)
..... ... ...+..+..|.+.+ |+.+.. ..++++|+||+|.+.+.......+...+....+.
T Consensus 240 ~~~~~~~-~~~----~I~f~nGs~i~~lsa~~~slrG---------~~~~~viiDE~a~~~~~~el~~al~~~ls~~~~~ 305 (385)
T 2o0j_A 240 QPGIVEW-NKG----SIELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRS 305 (385)
T ss_dssp SCCEEEE-CSS----EEEETTSCEEEEEECSHHHHHT---------SCCSEEEEESGGGSTTHHHHHHHHHHHHHSTTCC
T ss_pred hhhhccC-Ccc----EEEeCCCCEEEEEECCCCCccC---------CCCCEEEechhhhcCCCHHHHHHHHHHhhcCCCC
Confidence 11111 100 01112244444433 444422 3368999999999875112222233333332333
Q ss_pred eEEEEccCCCCChHHHHHHH
Q 037446 259 RILALTATPGSKQQTIQHII 278 (1165)
Q Consensus 259 riL~LSATP~~~~~~l~~Li 278 (1165)
+ +.+..||... ..++.+.
T Consensus 306 k-iiiiSTP~g~-n~fy~l~ 323 (385)
T 2o0j_A 306 K-IIITTTPNGL-NHFYDIW 323 (385)
T ss_dssp E-EEEEECCCSS-SHHHHHH
T ss_pred c-EEEEeCCCCc-hhHHHHH
Confidence 4 5555677544 2455554
No 101
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.16 E-value=0.0015 Score=79.84 Aligned_cols=63 Identities=13% Similarity=-0.006 Sum_probs=47.6
Q ss_pred CCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHH
Q 037446 107 NVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIE 171 (1165)
Q Consensus 107 ~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~ 171 (1165)
.+++.+.|.+++..+.. +.++|.++.|+|||.+....+..+.. .+.++++++||...+....+
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAES--LGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEecCcHHHHHHhHh
Confidence 45688899999998877 56888999999999876554443322 45789999999776665544
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.00 E-value=0.0022 Score=79.49 Aligned_cols=70 Identities=19% Similarity=0.083 Sum_probs=57.5
Q ss_pred CChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhC--CCCeEEEEecChhHHHHHHHHHHHHhCC
Q 037446 109 PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKIVFAAPSRPLVMQQIEACHNIVGI 179 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~--~~~rvLILvPtr~La~Q~~~e~~kl~g~ 179 (1165)
.+.+-|.+++.. ..+.++|.|+.|||||.+.+.-+.+++... +..++|+|++|+..+.+..+.+.+.++.
T Consensus 9 ~Ln~~Q~~av~~-~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 9 SLNDKQREAVAA-PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp TCCHHHHHHHTC-CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHhC-CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 467789999873 347899999999999999888777777643 3458999999999999999999887653
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.96 E-value=0.004 Score=76.60 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=95.1
Q ss_pred CCCCChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCc--
Q 037446 106 VNVPVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQE-- 182 (1165)
Q Consensus 106 t~IQlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~-- 182 (1165)
.++.+.+||..++..+.. +.+++..+-|.|||.+.+..++..+...++..+++++|++..+....+.++.++...+.
T Consensus 160 ~~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~ 239 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL 239 (592)
T ss_dssp BBCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTT
T ss_pred ccCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhh
Confidence 357899999999987643 66889999999999987766665555556668999999999999988888877643211
Q ss_pred eE-EEEeCCCChHHHHhhcCCccEEEE--cHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCe
Q 037446 183 WT-IDMTGQISPTKRASFWKTKRVFFV--TPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLR 259 (1165)
Q Consensus 183 ~v-~~l~G~~~~~~~~~l~~~~dIlVa--Tpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~r 259 (1165)
.. ..-.... ...+..+..|.+. +|..+.. ...+++|+||+|...........+...+......+
T Consensus 240 ~~~~~~~~~~----~i~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~~~~l~~~~~~~l~~~~~~~ 306 (592)
T 3cpe_A 240 QPGIVEWNKG----SIELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSK 306 (592)
T ss_dssp SCCEEEECSS----EEEETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTTHHHHHHHHHHHHSSSSCCE
T ss_pred ccccccCCcc----EEEecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCchhHHHHHHHHHhccCCCce
Confidence 10 0000100 0111234444433 3555533 13689999999998652111122222222222334
Q ss_pred EEEEccCCCCChHHHHHHH
Q 037446 260 ILALTATPGSKQQTIQHII 278 (1165)
Q Consensus 260 iL~LSATP~~~~~~l~~Li 278 (1165)
+.++.||... ..++.++
T Consensus 307 -ii~isTP~~~-~~~y~~~ 323 (592)
T 3cpe_A 307 -IIITTTPNGL-NHFYDIW 323 (592)
T ss_dssp -EEEEECCCTT-SHHHHHH
T ss_pred -EEEEeCCCCc-hhHHHHH
Confidence 5556687554 3444443
No 104
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.93 E-value=0.0023 Score=76.12 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHhhc------CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHH
Q 037446 109 PVRDYQFAITKTALF------SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQI 170 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~------rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~ 170 (1165)
+|.+-|.+++..+.. +.++|.++.|||||.+....+..+... ...++++++||...+....
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~-~~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST-GETGIILAAPTHAAKKILS 91 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCceEEEecCcHHHHHHHH
Confidence 567778888887643 378999999999998776655554443 3357999999966555443
No 105
>4drb_C Fanconi anemia group M protein; DNA repair, DNA binding complex, histone fold, DNA damage RE binding, DNA binding-protein binding complex; 2.63A {Homo sapiens}
Probab=96.86 E-value=0.00082 Score=64.40 Aligned_cols=44 Identities=30% Similarity=0.431 Sum_probs=41.9
Q ss_pred ccccccccCCCccceeeeccccccchHHHHHhhhcCCccCCCCc
Q 037446 634 SLIAFPHFQALPSRVHKVMHSFRTGMLIDMMQHLQGLTFSRDDR 677 (1165)
Q Consensus 634 ~L~~f~~~~~~p~~~~~~~~~~~t~~f~~~~~~~~~~~~~~~~~ 677 (1165)
+|..|..||..|.+.+.|+||++|++|+.+||+++.++.++.+|
T Consensus 73 SLsEWr~WQn~p~PTh~VdHSdRC~hFIsvMemIe~mR~Eegec 116 (141)
T 4drb_C 73 SLSEWRLWQDHPLPTHQVDHSDRCRHFIGLMQMIEGMRHEEGEC 116 (141)
T ss_dssp CSSTTGGGCSSCCCCSSSCCCHHHHHHHHHHHHHHHTSSCCSSC
T ss_pred chhhhhhhcCCCCCccccChHHHHHHHHHHHHHHHHHhhccccc
Confidence 68889999999999999999999999999999999999998888
No 106
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.091 Score=59.24 Aligned_cols=25 Identities=8% Similarity=-0.012 Sum_probs=20.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L 148 (1165)
.+++|.+++|+|||.++-..+.++.
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999998777666554
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.60 E-value=0.023 Score=66.78 Aligned_cols=84 Identities=19% Similarity=0.053 Sum_probs=55.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccE
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dI 205 (1165)
.++.++.|+|||....- .+. ..+.+|++||++++..|.+.+.+. +.. .....
T Consensus 164 ~~I~G~aGsGKTt~I~~----~~~---~~~~lVlTpT~~aa~~l~~kl~~~-~~~--------------------~~~~~ 215 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILS----RVN---FEEDLILVPGRQAAEMIRRRANAS-GII--------------------VATKD 215 (446)
T ss_dssp EEEEECTTSCHHHHHHH----HCC---TTTCEEEESCHHHHHHHHHHHTTT-SCC--------------------CCCTT
T ss_pred EEEEcCCCCCHHHHHHH----Hhc---cCCeEEEeCCHHHHHHHHHHhhhc-Ccc--------------------ccccc
Confidence 67889999999986432 221 256899999999999998887542 210 01122
Q ss_pred EEEcHHHHHHHHHcCccCCCCccEEEEccccccc
Q 037446 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 206 lVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~ 239 (1165)
-|.|.+.++.. ......-.+++||||||-.+-
T Consensus 216 ~V~T~dsfL~~--~~~~~~~~~d~liiDE~sm~~ 247 (446)
T 3vkw_A 216 NVRTVDSFLMN--YGKGARCQFKRLFIDEGLMLH 247 (446)
T ss_dssp TEEEHHHHHHT--TTSSCCCCCSEEEEETGGGSC
T ss_pred eEEEeHHhhcC--CCCCCCCcCCEEEEeCcccCC
Confidence 36787776531 112222348999999998663
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.29 E-value=0.037 Score=57.29 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=26.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecCh
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr 163 (1165)
.++.+++|+|||..++-.+..+.. .+.+++++.|..
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~--~g~~v~~~~~~~ 41 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKL--GKKKVAVFKPKI 41 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH--TTCEEEEEEEC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeecc
Confidence 578899999999987665555443 346799998883
No 109
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.25 E-value=0.043 Score=62.27 Aligned_cols=38 Identities=8% Similarity=0.076 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhhc--------CCeEEEcCCCchHHHHHHHHHHHHH
Q 037446 111 RDYQFAITKTALF--------SNTLVALPTGLGKTLIAAVVIYNFF 148 (1165)
Q Consensus 111 r~yQ~eal~~ll~--------rnvIl~a~TGsGKTL~a~lpil~~L 148 (1165)
++||.++...+.. +..++.++.|+|||..+...+..+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 4666666665543 2378999999999998877766554
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.93 E-value=0.049 Score=58.34 Aligned_cols=110 Identities=17% Similarity=0.110 Sum_probs=61.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccE
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dI 205 (1165)
.++.++||+|||..++-.+..+.. .+.+++++.|...- +....+... .|- .-..+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~--~g~kVli~~~~~d~-----r~~~~i~sr--------lG~----------~~~~~ 69 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEY--ADVKYLVFKPKIDT-----RSIRNIQSR--------TGT----------SLPSV 69 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCCG-----GGCSSCCCC--------CCC----------SSCCE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEEeccCc-----hHHHHHHHh--------cCC----------Ccccc
Confidence 567899999999887766655543 34578999887420 000000000 010 00122
Q ss_pred EEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccC
Q 037446 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266 (1165)
Q Consensus 206 lVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSAT 266 (1165)
.+.+.+.+...+... ....++++|||||++.+.. .....++.+.+. ... +.++|-
T Consensus 70 ~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l~~--~~ve~l~~L~~~--gi~-Vil~Gl 124 (223)
T 2b8t_A 70 EVESAPEILNYIMSN-SFNDETKVIGIDEVQFFDD--RICEVANILAEN--GFV-VIISGL 124 (223)
T ss_dssp EESSTHHHHHHHHST-TSCTTCCEEEECSGGGSCT--HHHHHHHHHHHT--TCE-EEEECC
T ss_pred ccCCHHHHHHHHHHH-hhCCCCCEEEEecCccCcH--HHHHHHHHHHhC--CCe-EEEEec
Confidence 345555666555432 2234589999999998754 344455555553 333 555554
No 111
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.87 E-value=0.048 Score=57.86 Aligned_cols=36 Identities=8% Similarity=-0.070 Sum_probs=27.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecCh
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr 163 (1165)
.++.++||+|||..++-.+..+.. .+.+++|+.|.+
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~--~g~kVli~k~~~ 66 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQF--AKQHAIVFKPCI 66 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEECC-
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEecc
Confidence 457899999999887776665543 356899999985
No 112
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.66 E-value=0.1 Score=54.48 Aligned_cols=36 Identities=19% Similarity=0.039 Sum_probs=27.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecCh
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr 163 (1165)
.++.++||+|||..++-.+..+.. .+.+++++.|..
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~--~g~kV~v~k~~~ 46 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKI--AKQKIQVFKPEI 46 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEEC-
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEecc
Confidence 567899999999887766655533 456899999983
No 113
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.40 E-value=0.12 Score=59.14 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=18.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+.+++.+++|+|||..+...+...
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999876655443
No 114
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.22 E-value=0.17 Score=57.45 Aligned_cols=24 Identities=42% Similarity=0.498 Sum_probs=19.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+.+++.+++|+|||..+-..+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999876655443
No 115
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.10 E-value=0.09 Score=55.78 Aligned_cols=110 Identities=11% Similarity=0.004 Sum_probs=58.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccE
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dI 205 (1165)
.++.++||+|||...+-.+..+.. .+.+++|+.|...--.. ...+..-.|. .-.-+
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~--~g~kvli~kp~~D~R~~-~~~I~Sr~G~---------------------~~~a~ 86 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIY--AKQKVVVFKPAIDDRYH-KEKVVSHNGN---------------------AIEAI 86 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC------------CBTTB---------------------CCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--cCCceEEEEeccCCcch-hhhHHHhcCC---------------------ceeeE
Confidence 567899999999766555544433 34679999998421100 0011111111 01123
Q ss_pred EEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCC
Q 037446 206 FFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATP 267 (1165)
Q Consensus 206 lVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP 267 (1165)
.|.....+... ...+.++|+||||+-+.. .....+..+.....+.-+-||-.+-
T Consensus 87 ~v~~~~di~~~------i~~~~dvV~IDEaQFf~~--~~v~~l~~la~~gi~Vi~~GLd~DF 140 (219)
T 3e2i_A 87 NISKASEIMTH------DLTNVDVIGIDEVQFFDD--EIVSIVEKLSADGHRVIVAGLDMDF 140 (219)
T ss_dssp EESSGGGGGGS------CCTTCSEEEECCGGGSCT--HHHHHHHHHHHTTCEEEEEEESBCT
T ss_pred EeCCHHHHHHH------HhcCCCEEEEechhcCCH--HHHHHHHHHHHCCCEEEEeeccccc
Confidence 33333333221 124688999999999875 4666667776555554444555543
No 116
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.96 E-value=0.095 Score=65.22 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=67.5
Q ss_pred CChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHh--CCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEE
Q 037446 109 PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRW--FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID 186 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~--~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~ 186 (1165)
.+.+-|.+++... .+.++|.|..|||||.+.+--+.+++.. .+..++|+|+.|+..+.+..+.+.+.++..
T Consensus 2 ~L~~~Q~~av~~~-~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~------ 74 (673)
T 1uaa_A 2 RLNPGQQQAVEFV-TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRK------ 74 (673)
T ss_dssp CCCHHHHHHHHCC-SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTT------
T ss_pred CCCHHHHHHHhCC-CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcc------
Confidence 4667799998753 4678999999999999888777777654 245689999999999999999998876532
Q ss_pred EeCCCChHHHHhhcCCccEEEEcHHHHHHHH
Q 037446 187 MTGQISPTKRASFWKTKRVFFVTPQVLEKDI 217 (1165)
Q Consensus 187 l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l 217 (1165)
....+.|+|...|...+
T Consensus 75 --------------~~~~~~v~Tfhs~~~~i 91 (673)
T 1uaa_A 75 --------------EARGLMISTFHTLGLDI 91 (673)
T ss_dssp --------------TTTTSEEEEHHHHHHHH
T ss_pred --------------cccCCEEEeHHHHHHHH
Confidence 01246788888877544
No 117
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.85 E-value=0.24 Score=50.29 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=28.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEA 172 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e 172 (1165)
+.+++.+++|+|||..+...+...... .+..++++ ...++.......
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~-~g~~~~~~-~~~~~~~~~~~~ 85 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEK-KGIRGYFF-DTKDLIFRLKHL 85 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHH-SCCCCCEE-EHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH-cCCeEEEE-EHHHHHHHHHHH
Confidence 568899999999998876655444312 23344443 333555544433
No 118
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.82 E-value=0.12 Score=55.31 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=27.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChh
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~ 164 (1165)
.++.++||+|||..++-.+..+. ..+.+++++-|.+.
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~--~~g~kvli~kp~~D 58 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIKYAKD 58 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH--TTTCCEEEEEETTC
T ss_pred EEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEeecCC
Confidence 56789999999987766665543 34678999998853
No 119
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.77 E-value=0.26 Score=50.76 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=18.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.++++.+++|+|||..+...+..+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 359999999999998766554443
No 120
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.74 E-value=0.077 Score=66.70 Aligned_cols=106 Identities=14% Similarity=0.066 Sum_probs=74.4
Q ss_pred CChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhC--CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEE
Q 037446 109 PVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF--PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID 186 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~--~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~ 186 (1165)
.|.+-|.+++... ...++|.|..|||||.+...-+.+++... +..++|+|+.|+..+.+..+.+.+.++..
T Consensus 11 ~Ln~~Q~~av~~~-~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~------ 83 (724)
T 1pjr_A 11 HLNKEQQEAVRTT-EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA------ 83 (724)
T ss_dssp TSCHHHHHHHHCC-SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG------
T ss_pred hCCHHHHHHHhCC-CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc------
Confidence 4677899988753 47899999999999999887777777532 44689999999999999999988875421
Q ss_pred EeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccC-C-CCccEEEEcccc
Q 037446 187 MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCL-M-KYLVCLVIDEAH 236 (1165)
Q Consensus 187 l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~-l-~~~~lVVIDEAH 236 (1165)
...+.|+|...+...+.+.... . -.-++-|+|+.+
T Consensus 84 ---------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d 120 (724)
T 1pjr_A 84 ---------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTD 120 (724)
T ss_dssp ---------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHH
T ss_pred ---------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHH
Confidence 0235788988776544321111 1 112356777654
No 121
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.55 E-value=0.2 Score=56.13 Aligned_cols=43 Identities=9% Similarity=0.145 Sum_probs=27.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ 169 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~ 169 (1165)
+.+++.+++|+|||..+-..+...... +..++++... .+..+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~-~~~~~~ 80 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD-DFAQAM 80 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH-HHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH-HHHHHH
Confidence 479999999999999876655544332 4456666543 444333
No 122
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.49 E-value=0.25 Score=58.29 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=31.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ 169 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~ 169 (1165)
+.+++.+++|+|||..+-..........++.+++++... .+..+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~-~~~~~~ 175 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE-KFLNDL 175 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH-HHHHHH
Confidence 469999999999999877666555555555667766544 444333
No 123
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.94 E-value=0.34 Score=54.28 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=23.7
Q ss_pred CCCccEEEEcccccccCccchHHHHHHHHc-CCCCCeEEEEc
Q 037446 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALT 264 (1165)
Q Consensus 224 l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LS 264 (1165)
...++++||||||++... .. ..+.+.+. .+....+|++|
T Consensus 80 ~~~~kvviIdead~lt~~-a~-naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ-AA-NAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHH-HH-HHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHH-HH-HHHHHHHhCCCCCeEEEEEE
Confidence 346899999999999752 33 33334444 44444555544
No 124
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.63 E-value=0.16 Score=58.04 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=22.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
.++|.+++|+|||..+-..+... ....+..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~-~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY-KDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-TTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-hhhcCeeEEEEe
Confidence 58999999999998875544333 211123455554
No 125
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=92.19 E-value=0.33 Score=58.85 Aligned_cols=89 Identities=11% Similarity=0.129 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCc
Q 037446 444 LSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGY 523 (1165)
Q Consensus 444 l~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~ 523 (1165)
...+.+.|.+... ..++.+|||+++....+.+++. .+ ..+...+. +++ +.++++.|+.+.-
T Consensus 378 ~~~l~~~i~~l~~---~~~g~~lvlF~Sy~~l~~v~~~---~~---~~v~~q~~-------~~~---~~~~~~~~~~~~~ 438 (551)
T 3crv_A 378 WKRYADYLLKIYF---QAKANVLVVFPSYEIMDRVMSR---IS---LPKYVESE-------DSS---VEDLYSAISANNK 438 (551)
T ss_dssp HHHHHHHHHHHHH---HCSSEEEEEESCHHHHHHHHTT---CC---SSEEECCS-------SCC---HHHHHHHTTSSSS
T ss_pred HHHHHHHHHHHHH---hCCCCEEEEecCHHHHHHHHHh---cC---CcEEEcCC-------CCC---HHHHHHHHHhcCC
Confidence 3455555555543 1356999999999998888762 22 11222221 234 4567888864444
Q ss_pred eEEEEc--cccccccccc-----CCCEEEEeccCC
Q 037446 524 NVIVAT--SIGEEGLDIM-----EVDLVICFDANV 551 (1165)
Q Consensus 524 ~VLVAT--da~~eGLDIp-----~vd~VI~~D~p~ 551 (1165)
.||++| ..+.+|||+| .+++||....|.
T Consensus 439 ~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 439 VLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp CEEEEESSCCSCCSSCCEETTEESEEEEEEESCCC
T ss_pred eEEEEEecceecccccccccCCcceeEEEEEcCCC
Confidence 799998 6999999999 488999988764
No 126
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.05 E-value=1.1 Score=52.66 Aligned_cols=122 Identities=20% Similarity=0.264 Sum_probs=67.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe--cChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA--PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv--Ptr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~ 202 (1165)
-+++.+++|+|||.++...+..+.. .+++++++. +.+.-+.++...+....+.+ +.......
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~--~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~---~~~~~~~~----------- 162 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKK--RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQ---VYGEPNNQ----------- 162 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCSCHHHHHHHHHHHHTTTCC---EECCTTCS-----------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEecCccchhHHHHHHHHHHhcCCc---eeeccccC-----------
Confidence 3667799999999987777655533 356676665 34444444444444444443 21111111
Q ss_pred ccEEEEcHHHHH-HHHHcCccCCCCccEEEEccccccc--CccchHHHHHHHHc-CCCCCeEEEEccCCCCC
Q 037446 203 KRVFFVTPQVLE-KDIQSGTCLMKYLVCLVIDEAHRAT--GNYAYCTAIRELMS-VPVQLRILALTATPGSK 270 (1165)
Q Consensus 203 ~dIlVaTpq~L~-~~l~~~~~~l~~~~lVVIDEAHrl~--~~~~~~~~l~~L~~-~~~~~riL~LSATP~~~ 270 (1165)
.|..+. ..+. .....++++||||++-+.. .+..+...+..+.. ..+..-++.+.|+-...
T Consensus 163 ------dp~~i~~~al~--~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~ 226 (433)
T 3kl4_A 163 ------NPIEIAKKGVD--IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK 226 (433)
T ss_dssp ------CHHHHHHHHHH--HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG
T ss_pred ------CHHHHHHHHHH--HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH
Confidence 122222 1222 2233578999999998865 43345455555443 23445567788876443
No 127
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.61 E-value=0.12 Score=54.50 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=19.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+.+++.+++|+|||..+...+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999876655444
No 128
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.37 E-value=0.51 Score=49.25 Aligned_cols=36 Identities=14% Similarity=-0.041 Sum_probs=26.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
=.++.++||+|||...+-.+..+... +.+++++.|.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~--~~kvl~~kp~ 57 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYA 57 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEET
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEccc
Confidence 36778999999996656656555443 4789999888
No 129
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=91.08 E-value=0.2 Score=66.65 Aligned_cols=128 Identities=12% Similarity=0.011 Sum_probs=78.8
Q ss_pred CCCCCCChHHHHHHHHHhhcCCeEEEcCCCchHHHHHHHHHHHHHHhC----CCCeEEEEecChhHHHHHHHHHHHHhCC
Q 037446 104 YPVNVPVRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNFFRWF----PDGKIVFAAPSRPLVMQQIEACHNIVGI 179 (1165)
Q Consensus 104 ~Pt~IQlr~yQ~eal~~ll~rnvIl~a~TGsGKTL~a~lpil~~L~~~----~~~rvLILvPtr~La~Q~~~e~~kl~g~ 179 (1165)
.|...++.+-|.+++..- +++++|.|.-|||||.+.+--+..++... ...++|+|++|+..+....+.+...++.
T Consensus 5 ~~~~~~~t~eQ~~~i~~~-~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~ 83 (1232)
T 3u4q_A 5 KPADSTWTDDQWNAIVST-GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEK 83 (1232)
T ss_dssp -----CCCHHHHHHHHCC-SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHhCC-CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHH
Confidence 456677888899998865 68999999999999998777777776543 3358999999999999999888775431
Q ss_pred CCceEEEEeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCC--CCccEEEEccccc
Q 037446 180 PQEWTIDMTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLM--KYLVCLVIDEAHR 237 (1165)
Q Consensus 180 ~~~~v~~l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l--~~~~lVVIDEAHr 237 (1165)
... .+......+..+..-..+-|+|...+...+.+..... -.-++-|+||...
T Consensus 84 ~~~-----~~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~~~d~~~~ 138 (1232)
T 3u4q_A 84 ELV-----QRPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTEG 138 (1232)
T ss_dssp HHH-----HSTTCHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTCEECCHHHH
T ss_pred Hhh-----cCcchHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCCeeCCHHHH
Confidence 000 0001111111111224567899988876554321111 1122337787653
No 130
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.00 E-value=1.6 Score=43.54 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=19.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+++++.+++|+|||..+...+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999998876655544
No 131
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.87 E-value=0.24 Score=54.77 Aligned_cols=24 Identities=21% Similarity=0.094 Sum_probs=19.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.++++.+++|+|||.++-..+..+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999876655444
No 132
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.61 E-value=0.65 Score=51.38 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=18.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
++++.++.|+|||..+-..+..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999887665544
No 133
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.16 E-value=2.3 Score=44.07 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=17.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.+++.++.|+|||..+...+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999876655443
No 134
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.97 E-value=0.99 Score=49.03 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=18.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+++++.+++|+|||..+...+..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999987665544
No 135
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.81 E-value=1.9 Score=42.99 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+.+++.+++|+|||..+...+..+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 569999999999999876655444
No 136
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.63 E-value=0.44 Score=53.43 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=18.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+++|+.+|+|+|||..+-..+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56999999999999987665544
No 137
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.28 E-value=1.1 Score=43.95 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=17.3
Q ss_pred CCeEEEcCCCchHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVV 143 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lp 143 (1165)
.++++.+++|+|||.++-..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHH
Confidence 68999999999999887553
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.16 E-value=0.91 Score=51.29 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=23.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCC-CCeEEEEe
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFP-DGKIVFAA 160 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~-~~rvLILv 160 (1165)
+.++|.++.|+|||..+-..+........ +..++++.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 57999999999999987665544332221 33455544
No 139
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.95 E-value=0.67 Score=51.21 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=18.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
++++.++.|+|||..+...+..+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999998776655443
No 140
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=88.77 E-value=0.83 Score=50.91 Aligned_cols=40 Identities=25% Similarity=0.235 Sum_probs=22.5
Q ss_pred CCccEEEEcccccccCccchHHHHHHHHc-CCCCCeEEEEccC
Q 037446 225 KYLVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTAT 266 (1165)
Q Consensus 225 ~~~~lVVIDEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSAT 266 (1165)
...++|||||+|.+... .....+..++. .....++|+ +++
T Consensus 104 ~~~~vliiDEi~~l~~~-~~~~~L~~~le~~~~~~~iI~-~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLA-ESQRHLRSFMEAYSSNCSIII-TAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGH-HHHHHHHHHHHHHGGGCEEEE-EES
T ss_pred CCCeEEEEECCcccCcH-HHHHHHHHHHHhCCCCcEEEE-EeC
Confidence 35789999999999721 23333333333 334445555 444
No 141
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.64 E-value=2.1 Score=50.19 Aligned_cols=122 Identities=19% Similarity=0.172 Sum_probs=66.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe--cChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA--PSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv--Ptr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~ 202 (1165)
-+++++++|+|||.++.-.+..+.. .+.+++++. |.+.-+.++...+....+.+ +.....+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~--~G~kVllv~~D~~R~aa~eqL~~~~~~~gvp---v~~~~~~~----------- 165 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQK--RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIE---VFGNPQEK----------- 165 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCCSSTHHHHHHHHHHGGGTCE---EECCTTCC-----------
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHHhcCCc---EEecCCCC-----------
Confidence 4678899999999988777755533 355676666 45555555555555544432 21111111
Q ss_pred ccEEEEcHHHHH-HHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcC-CCCCeEEEEccCCCCC
Q 037446 203 KRVFFVTPQVLE-KDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSV-PVQLRILALTATPGSK 270 (1165)
Q Consensus 203 ~dIlVaTpq~L~-~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~-~~~~riL~LSATP~~~ 270 (1165)
.|..+. ..+.. .....+++||||.+=+..........++.+... .+..-++.+.||-...
T Consensus 166 ------dp~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~ 227 (443)
T 3dm5_A 166 ------DAIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ 227 (443)
T ss_dssp ------CHHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG
T ss_pred ------CHHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh
Confidence 122221 22211 112348899999997665433343444444432 2334567777776433
No 142
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.59 E-value=1.2 Score=49.84 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=17.6
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpi 144 (1165)
.++++.+++|+|||..+-...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 579999999999998865543
No 143
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.96 E-value=0.89 Score=49.12 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=17.5
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpi 144 (1165)
..+++.+++|+|||..+-...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHH
Confidence 689999999999998765543
No 144
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.88 E-value=0.82 Score=53.04 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=24.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
+++|+.+|+|+|||+.+-..+-+. +..++.|...
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~-----~~~f~~v~~s 216 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT-----DCKFIRVSGA 216 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH-----TCEEEEEEGG
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh-----CCCceEEEhH
Confidence 789999999999999877666554 3345555444
No 145
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=87.52 E-value=0.9 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=19.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+++|+.+|+|+|||..+-..+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 579999999999999877665543
No 146
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=87.52 E-value=0.4 Score=52.37 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=18.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil 145 (1165)
+++++.+++|+|||..+-..+.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999988665543
No 147
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=87.36 E-value=0.77 Score=52.90 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=18.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil 145 (1165)
+++|+.+++|+|||.++-..+.
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999998766543
No 148
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=87.16 E-value=2.3 Score=45.33 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=18.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+.+++.+++|+|||..+-..+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999987665543
No 149
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.99 E-value=1.3 Score=49.74 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=18.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
++++.+|.|+|||..+-..+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999998876655543
No 150
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.61 E-value=1.2 Score=49.16 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=18.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+.+++.+|+|+|||..+-..+..+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357888999999999877665544
No 151
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=86.56 E-value=0.68 Score=57.02 Aligned_cols=111 Identities=23% Similarity=0.279 Sum_probs=72.2
Q ss_pred ChHHHHHHHHHhhc---CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEE
Q 037446 110 VRDYQFAITKTALF---SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTID 186 (1165)
Q Consensus 110 lr~yQ~eal~~ll~---rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~ 186 (1165)
+-.-|.+++..+.. ...+|.++-|.|||.+..+.+... ...++|.+|+..=+... ..+.+.
T Consensus 176 ~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-----~~~~~vtAP~~~a~~~l----~~~~~~------- 239 (671)
T 2zpa_A 176 PQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI-----AGRAIVTAPAKASTDVL----AQFAGE------- 239 (671)
T ss_dssp CCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS-----SSCEEEECSSCCSCHHH----HHHHGG-------
T ss_pred CCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH-----HhCcEEECCCHHHHHHH----HHHhhC-------
Confidence 44568899988876 346888999999997776666554 24579999997655432 222111
Q ss_pred EeCCCChHHHHhhcCCccEEEEcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccC
Q 037446 187 MTGQISPTKRASFWKTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTAT 266 (1165)
Q Consensus 187 l~G~~~~~~~~~l~~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSAT 266 (1165)
.|-+..|+.+.. .....++||||||=.+-- ..++.++. ....+.||.|
T Consensus 240 -----------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp~-----pll~~ll~---~~~~v~~~tT 287 (671)
T 2zpa_A 240 -----------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIPA-----PLLHQLVS---RFPRTLLTTT 287 (671)
T ss_dssp -----------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSCH-----HHHHHHHT---TSSEEEEEEE
T ss_pred -----------------CeEEeCchhhhh-------CcccCCEEEEEchhcCCH-----HHHHHHHh---hCCeEEEEec
Confidence 133456766432 234589999999987743 34556664 2334888888
Q ss_pred CC
Q 037446 267 PG 268 (1165)
Q Consensus 267 P~ 268 (1165)
..
T Consensus 288 v~ 289 (671)
T 2zpa_A 288 VQ 289 (671)
T ss_dssp BS
T ss_pred CC
Confidence 63
No 152
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=86.52 E-value=5.8 Score=50.01 Aligned_cols=99 Identities=13% Similarity=0.138 Sum_probs=75.1
Q ss_pred ccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC--CccceeeecccccccCCCCCHHHHHH
Q 037446 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD--LVKATEFIGQSSGKASKGQSQKVQQA 513 (1165)
Q Consensus 436 ~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~--~i~~~~l~G~~~g~~~ggms~~eR~~ 513 (1165)
.....++|-...+-.+...+. .+.+++|.++++.-+..+++.+..... .+++..++| +++..+|..
T Consensus 395 ~a~TGSGKTlvall~il~~l~----~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G--------~~~~~~r~~ 462 (780)
T 1gm5_A 395 QGDVGSGKTVVAQLAILDNYE----AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIG--------ATTPSEKEK 462 (780)
T ss_dssp ECCSSSSHHHHHHHHHHHHHH----HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCS--------SSCHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHH----cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeC--------CCCHHHHHH
Confidence 345678887766555555444 368999999999999988888876521 155555555 789999999
Q ss_pred HHHHHhcCCceEEEEccc-ccccccccCCCEEEE
Q 037446 514 VLEKFRAGGYNVIVATSI-GEEGLDIMEVDLVIC 546 (1165)
Q Consensus 514 il~~Fr~g~~~VLVATda-~~eGLDIp~vd~VI~ 546 (1165)
+++.+.+|..+|+|+|.. +...+++..+++||.
T Consensus 463 ~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 463 IKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp HHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred HHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 999999999999999964 445678888888886
No 153
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.18 E-value=2.1 Score=48.04 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=25.5
Q ss_pred CCccEEEEcccccccCccchHHHHHHHHcCCCCCeEEEEccCCC
Q 037446 225 KYLVCLVIDEAHRATGNYAYCTAIRELMSVPVQLRILALTATPG 268 (1165)
Q Consensus 225 ~~~~lVVIDEAHrl~~~~~~~~~l~~L~~~~~~~riL~LSATP~ 268 (1165)
.+.++|||||+|.+.. ......++.+........+|+.|-.+.
T Consensus 133 ~~~~vlilDE~~~L~~-~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSLTK-DAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSSCH-HHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccccCH-HHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 4678999999999543 233334444444555556566555554
No 154
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=85.48 E-value=1.3 Score=53.56 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=27.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCC-CC-eEEEEecC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFP-DG-KIVFAAPS 162 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~-~~-rvLILvPt 162 (1165)
.+++|++.||||||.+.-..+..++.... .. ++++|=|.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 37999999999999988887777765433 33 34444444
No 155
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=85.37 E-value=0.98 Score=50.11 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=18.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+.+++.+|+|+|||..+-..+..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 56999999999999987655443
No 156
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.34 E-value=1.6 Score=48.98 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=18.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.++++.+++|+|||..+-..+..+
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 359999999999998876655443
No 157
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=85.00 E-value=1.5 Score=48.53 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=18.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil 145 (1165)
..+++.+++|+|||..+-....
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999988665543
No 158
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=84.92 E-value=0.71 Score=45.80 Aligned_cols=25 Identities=16% Similarity=-0.009 Sum_probs=18.8
Q ss_pred cCCeEEEcCCCchHHHHHHHHHHHH
Q 037446 123 FSNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 123 ~rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
++.+++.+++|+|||..+...+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999998766654433
No 159
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=84.86 E-value=1.2 Score=52.54 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=18.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+.+|+.+|+|+|||..+-..+..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999987655443
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=84.64 E-value=0.72 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=18.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
++++.+|.|+|||..+...+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 59999999999998876655443
No 161
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=84.61 E-value=1.7 Score=49.13 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=17.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+++.++.|+|||..+-..+...
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999998876655443
No 162
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=84.48 E-value=0.94 Score=51.95 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=17.0
Q ss_pred CeEE--EcCCCchHHHHHHHHHHH
Q 037446 125 NTLV--ALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl--~a~TGsGKTL~a~lpil~ 146 (1165)
.++| .++.|+|||..+...+..
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHH
Confidence 4777 899999999987655543
No 163
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=84.47 E-value=1.3 Score=52.25 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=17.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil 145 (1165)
..+|+.+|+|+|||..+-....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999988765543
No 164
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=83.80 E-value=6.9 Score=43.73 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=18.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+.+++.+|+|+|||..+-..+.+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999987655543
No 165
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=83.75 E-value=1.2 Score=50.06 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=56.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCcc
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~d 204 (1165)
-++|.++.|+|||..++-.+.+......+++++||....++... .+++ +|.... +
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~-lGvd~d---------------------~ 84 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRS-MGVDPE---------------------R 84 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHH-TTCCGG---------------------G
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHH-hCCCHH---------------------H
Confidence 36788999999999988888777665557899999887666432 2333 354311 2
Q ss_pred EEEEcHHHHHHH----HHc-CccCCCCccEEEEccccccc
Q 037446 205 VFFVTPQVLEKD----IQS-GTCLMKYLVCLVIDEAHRAT 239 (1165)
Q Consensus 205 IlVaTpq~L~~~----l~~-~~~~l~~~~lVVIDEAHrl~ 239 (1165)
+++..|..+... +.. ..+.-..+++||||=+..+.
T Consensus 85 llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 85 VIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp EEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred eEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 344443333222 111 11334568999999998875
No 166
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=83.10 E-value=4.5 Score=46.42 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=66.8
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC-CccceeeecccccccCCCCCHHHHHHHHH
Q 037446 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD-LVKATEFIGQSSGKASKGQSQKVQQAVLE 516 (1165)
Q Consensus 438 ~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~-~i~~~~l~G~~~g~~~ggms~~eR~~il~ 516 (1165)
.+.++|-...+-.+..... .+.++||.++++.-+..+++.++..+. .+++..++| +.+..+|...++
T Consensus 44 pTGsGKT~~~l~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g--------~~~~~~~~~~~~ 111 (414)
T 3oiy_A 44 PTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYS--------SMKKEEKEKFEK 111 (414)
T ss_dssp CSSSSHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCT--------TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhc----CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEEC--------CCChhhHHHHHH
Confidence 4567776644433333322 578999999999999999999988542 245555554 788888888999
Q ss_pred HHhcCCceEEEEccccc----ccccccCCCEEEE
Q 037446 517 KFRAGGYNVIVATSIGE----EGLDIMEVDLVIC 546 (1165)
Q Consensus 517 ~Fr~g~~~VLVATda~~----eGLDIp~vd~VI~ 546 (1165)
.+..|..+|+|+|.-.- .-+++..+++||.
T Consensus 112 ~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 112 SFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp HHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEE
T ss_pred HhhcCCCCEEEECHHHHHHHHHHhccccccEEEE
Confidence 99999899999995211 0134445666554
No 167
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=83.06 E-value=3.7 Score=48.16 Aligned_cols=111 Identities=13% Similarity=0.047 Sum_probs=61.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHH-HHhCCCCceEEEEeCCCChHHHHhh----
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACH-NIVGIPQEWTIDMTGQISPTKRASF---- 199 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~-kl~g~~~~~v~~l~G~~~~~~~~~l---- 199 (1165)
=++|++++|+|||..++-.+.+.... .+.+++|+.-- .-..|+...+. ...++..... ..|......+..+
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~l--~~g~l~~~~~~~~~~a~ 277 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE-MPAAQLTLRMMCSEARIDMNRV--RLGQLTDRDFSRLVDVA 277 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS-SCHHHHHHHHHHHHTTCCTTTC--CGGGCCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHHH--hCCCCCHHHHHHHHHHH
Confidence 37889999999998877766665432 24578887664 33445554442 2334432111 1344444443321
Q ss_pred --cCCccEEEE-----cHHHHHHHHHcCccCCCCccEEEEcccccccC
Q 037446 200 --WKTKRVFFV-----TPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 200 --~~~~dIlVa-----Tpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
+....+.+- |+..+...+..- ..-..+++||||..+.+..
T Consensus 278 ~~l~~~~l~i~d~~~~s~~~l~~~~~~l-~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 278 SRLSEAPIYIDDTPDLTLMEVRARARRL-VSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHTSCEEEECCTTCBHHHHHHHHHHH-HHHSCCCEEEEECGGGCBC
T ss_pred HHHhcCCEEEECCCCCCHHHHHHHHHHH-HHHcCCCEEEEcChhhcCC
Confidence 123345553 445554433321 1113588999999999864
No 168
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=82.75 E-value=3.4 Score=46.66 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=19.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+.+++.+|+|+|||..+-..+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999877665544
No 169
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.56 E-value=1.3 Score=52.08 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=19.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+++|+.+|.|+|||+.+-..+-+.
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhcc
Confidence 789999999999999876666554
No 170
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=82.44 E-value=3.6 Score=48.37 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=60.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHH-HHHhCCCCceEEEEeCCCChHHHHhh----
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEAC-HNIVGIPQEWTIDMTGQISPTKRASF---- 199 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~-~kl~g~~~~~v~~l~G~~~~~~~~~l---- 199 (1165)
-++|++++|+|||..+...+...... .+.+++|+..-.. ..|+...+ ...++...... ..|......+..+
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~s-~~~l~~r~~~~~~~~~~~~l--~~g~l~~~~~~~~~~a~ 280 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEMS-AQQLVMRMLCAEGNINAQNL--RTGKLTPEDWGKLTMAM 280 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSSC-HHHHHHHHHHHHHTCCHHHH--HTSCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCC-HHHHHHHHHHHHcCCCHHHH--hcCCCCHHHHHHHHHHH
Confidence 47888999999998877776665433 2347888875432 34444443 22344432111 1233343333221
Q ss_pred --cCCccEEEE-----cHHHHHHHHHcCccCCCCccEEEEcccccccC
Q 037446 200 --WKTKRVFFV-----TPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 200 --~~~~dIlVa-----Tpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
+...++.+- |.+.+...+.. ......+++||||+.+.+..
T Consensus 281 ~~l~~~~l~i~d~~~~s~~~i~~~~~~-l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 281 GSLSNAGIYIDDTPSIRVSDIRAKCRR-LKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHSSCEEEECCTTCCHHHHHHHHHH-HHTTTCCCEEEEECGGGSCC
T ss_pred HHHhcCCEEEECCCCCCHHHHHHHHHH-HHHHcCCCEEEEccHHHhcc
Confidence 122345553 44444443332 11123588999999999874
No 171
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=82.36 E-value=4.6 Score=48.03 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=41.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVG 178 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g 178 (1165)
....+.+-||+|||++.+..+.. .++.+|||+|+...+.|++++++.+++
T Consensus 15 ~~~~l~g~~gs~ka~~~a~l~~~-----~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 15 EQRLLGELTGAACATLVAEIAER-----HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp CEEEEECCCTTHHHHHHHHHHHH-----SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CeEEEeCCCchHHHHHHHHHHHH-----hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 45788999999999976555433 256799999999999999999998865
No 172
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=82.36 E-value=2.4 Score=47.97 Aligned_cols=110 Identities=14% Similarity=0.151 Sum_probs=61.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHH-HHhCCCCceEEEEeCCCChHHHHhhc----
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACH-NIVGIPQEWTIDMTGQISPTKRASFW---- 200 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~-kl~g~~~~~v~~l~G~~~~~~~~~l~---- 200 (1165)
++|++++|+|||..++-.+.+... .+.+++|+..- .-..|....+. ...+.+... ...|.....++..+.
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE-ms~~ql~~Rlls~~~~v~~~~--l~~g~Ls~~e~~~l~~a~~ 123 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE-MSAEQLALRALSDLTSINMHD--LESGRLDDDQWENLAKCFD 123 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS-SCHHHHHHHHHHHHHCCCHHH--HHHTCCCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC-CCHHHHHHHHHHHhhCCCHHH--HhcCCCCHHHHHHHHHHHH
Confidence 788999999999987777766554 45678888765 33455554442 223332111 112444444433221
Q ss_pred --CCccEEEE-----cHHHHHHHHHcCccCCCCccEEEEcccccccC
Q 037446 201 --KTKRVFFV-----TPQVLEKDIQSGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 201 --~~~dIlVa-----Tpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
...+++|- |+..|...+.+-.-....+++||||-.+.+..
T Consensus 124 ~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 124 HLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp HHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCT
T ss_pred HHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcC
Confidence 12345552 34444443332110111589999999998865
No 173
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=81.94 E-value=6.3 Score=40.77 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=29.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACH 174 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~ 174 (1165)
-+++.+++|+|||..+...+..... .+++++++... ....+....+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~-~~~~~~~~~~~ 71 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTE-ESRDSIIRQAK 71 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESS-SCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcc-cCHHHHHHHHH
Confidence 4778899999999876665544433 24567777644 23334444443
No 174
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=80.35 E-value=6 Score=43.80 Aligned_cols=35 Identities=26% Similarity=0.155 Sum_probs=23.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
.+++.+++|+|||.++...+..+. ...+.+++++.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~-~~~G~~V~lv~ 141 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISM-LEKHKKIAFIT 141 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HhcCCEEEEEe
Confidence 467789999999988777665443 22344666654
No 175
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.13 E-value=2.3 Score=49.69 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+.+|+.+|.|+|||+.+-..+-+.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHHh
Confidence 689999999999999877666554
No 176
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=79.87 E-value=2.2 Score=44.15 Aligned_cols=33 Identities=24% Similarity=0.170 Sum_probs=24.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
-+++.+++|+|||..+...+. . .+.+++++.-.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~---~--~~~~v~~i~~~ 54 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL---L--SGKKVAYVDTE 54 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH---H--HCSEEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHH---H--cCCcEEEEECC
Confidence 478899999999987766655 1 35677777644
No 177
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=79.85 E-value=2 Score=47.86 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=17.5
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpi 144 (1165)
.++++.+++|+|||.++-...
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~ 46 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALH 46 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHH
Confidence 689999999999998765543
No 178
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=78.48 E-value=2.2 Score=50.82 Aligned_cols=21 Identities=48% Similarity=0.581 Sum_probs=17.5
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpi 144 (1165)
+++|+.+++|+|||+++-...
T Consensus 239 ~~vLL~GppGtGKT~lAraia 259 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVA 259 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHH
Confidence 579999999999999876543
No 179
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=78.15 E-value=8.2 Score=40.37 Aligned_cols=38 Identities=18% Similarity=0.072 Sum_probs=25.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhC----CCCeEEEEecC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWF----PDGKIVFAAPS 162 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~----~~~rvLILvPt 162 (1165)
-+++.+++|+|||..+...+...+... ....++++.-.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 478899999999998776665432211 24567777654
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.84 E-value=2.7 Score=50.35 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=18.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+.+++.+|+|+|||.++-..+.+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999987665544
No 181
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=75.77 E-value=3.7 Score=45.05 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=24.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
-++|.+++|+|||..+...+..... ..+.+++++.-.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~-~~G~~v~~~~~e 73 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGT-AMGKKVGLAMLE 73 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH-TSCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH-HcCCeEEEEeCc
Confidence 4778999999999876665544432 223367777543
No 182
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=75.40 E-value=6.9 Score=51.33 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=71.8
Q ss_pred cCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcC-CCccceeeecccccccCCCCCHHHHHHHH
Q 037446 437 HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIG-DLVKATEFIGQSSGKASKGQSQKVQQAVL 515 (1165)
Q Consensus 437 ~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g-~~i~~~~l~G~~~g~~~ggms~~eR~~il 515 (1165)
....++|-...+-.+..... .+.++||.++++.-+..+++.|...+ ..+++..++| +++..+|...+
T Consensus 100 ApTGSGKTl~~l~~il~~~~----~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~G--------g~~~~er~~~~ 167 (1104)
T 4ddu_A 100 APTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYS--------SMKKEEKEKFE 167 (1104)
T ss_dssp CSTTCCHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECT--------TCCTTHHHHHH
T ss_pred eCCCCcHHHHHHHHHHHHHh----cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeC--------CCCHHHHHHHH
Confidence 34567787755555444433 57899999999999999999998853 1145555555 77888888889
Q ss_pred HHHhcCCceEEEEccc-----ccccccccCCCEEEE
Q 037446 516 EKFRAGGYNVIVATSI-----GEEGLDIMEVDLVIC 546 (1165)
Q Consensus 516 ~~Fr~g~~~VLVATda-----~~eGLDIp~vd~VI~ 546 (1165)
+.+..|..+|||+|.- +.. +++..+++||.
T Consensus 168 ~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lVi 202 (1104)
T 4ddu_A 168 KSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFV 202 (1104)
T ss_dssp HHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEE
T ss_pred HHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEE
Confidence 9999999999999942 222 56778898886
No 183
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=75.13 E-value=2.6 Score=50.00 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=18.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+.+++.+|+|+|||+.+-..+-.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999987655443
No 184
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=74.80 E-value=21 Score=39.66 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=22.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
+++.+++|+|||..+...+..+.. .+++++++.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~ 139 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAA 139 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEc
Confidence 567899999999887766654432 345666654
No 185
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=74.39 E-value=11 Score=37.41 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=53.5
Q ss_pred CCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCccCCC
Q 037446 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTCLMK 225 (1165)
Q Consensus 151 ~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~~l~ 225 (1165)
...+++||.|+++.-+....+.+... | ..+..++|+.+..++.... ...+|+|+| +.+ ...+.+.
T Consensus 33 ~~~~~~lVF~~~~~~~~~l~~~L~~~-~---~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-~~~-----~~Gld~~ 102 (163)
T 2hjv_A 33 ENPDSCIIFCRTKEHVNQLTDELDDL-G---YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-DVA-----ARGIDIE 102 (163)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHHT-T---CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-GGG-----TTTCCCS
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHHc-C---CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-Chh-----hcCCchh
Confidence 35678999999999999988888774 4 3578899998876654332 346899999 333 2345677
Q ss_pred CccEEEEcc
Q 037446 226 YLVCLVIDE 234 (1165)
Q Consensus 226 ~~~lVVIDE 234 (1165)
.+++||.-.
T Consensus 103 ~~~~Vi~~~ 111 (163)
T 2hjv_A 103 NISLVINYD 111 (163)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEeC
Confidence 788888743
No 186
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=74.10 E-value=25 Score=46.31 Aligned_cols=99 Identities=12% Similarity=0.125 Sum_probs=71.9
Q ss_pred ccCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC--CccceeeecccccccCCCCCHHHHHH
Q 037446 436 SHGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD--LVKATEFIGQSSGKASKGQSQKVQQA 513 (1165)
Q Consensus 436 ~~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~--~i~~~~l~G~~~g~~~ggms~~eR~~ 513 (1165)
.....++|-...+..+..... .+.+++|.|+++.-+...++.+..... .+++..++| ..+..++..
T Consensus 630 ~~~TGsGKT~val~aa~~~~~----~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~--------~~~~~~~~~ 697 (1151)
T 2eyq_A 630 CGDVGFGKTEVAMRAAFLAVD----NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISR--------FRSAKEQTQ 697 (1151)
T ss_dssp ECCCCTTTHHHHHHHHHHHHT----TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEEST--------TSCHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHH----hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeC--------CCCHHHHHH
Confidence 345678887655444433333 467999999999999999888876421 244555554 568888999
Q ss_pred HHHHHhcCCceEEEEcc-cccccccccCCCEEEE
Q 037446 514 VLEKFRAGGYNVIVATS-IGEEGLDIMEVDLVIC 546 (1165)
Q Consensus 514 il~~Fr~g~~~VLVATd-a~~eGLDIp~vd~VI~ 546 (1165)
+++.+..|..+|+|+|. .+...+.+..+++||.
T Consensus 698 ~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 698 ILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp HHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred HHHHHhcCCCCEEEECHHHHhCCccccccceEEE
Confidence 99999999999999994 4555677888887775
No 187
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=72.37 E-value=5.7 Score=46.50 Aligned_cols=35 Identities=26% Similarity=0.119 Sum_probs=25.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
..+++++++|+|||..+...+..+... +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~--G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR--GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH--HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 367889999999998877766655432 45676665
No 188
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=72.03 E-value=9.1 Score=46.71 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=17.8
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpi 144 (1165)
+.+++.+|+|+|||..+-..+
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia 81 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMA 81 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHh
Confidence 789999999999998765544
No 189
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=71.93 E-value=14 Score=36.44 Aligned_cols=76 Identities=11% Similarity=0.067 Sum_probs=53.8
Q ss_pred HhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCccC
Q 037446 149 RWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTCL 223 (1165)
Q Consensus 149 ~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~~ 223 (1165)
...+.+++||.|+++.-+......+... + ..+..++|+.+..++.... ...+|+|+|. .+ ...+.
T Consensus 26 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~-~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~G~d 95 (165)
T 1fuk_A 26 DSISVTQAVIFCNTRRKVEELTTKLRND-K---FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-LL-----ARGID 95 (165)
T ss_dssp HHTTCSCEEEEESSHHHHHHHHHHHHHT-T---CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-GG-----TTTCC
T ss_pred HhCCCCCEEEEECCHHHHHHHHHHHHHc-C---CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-hh-----hcCCC
Confidence 3346678999999999998888888763 3 3578899998877664332 3468999993 22 23456
Q ss_pred CCCccEEEEcc
Q 037446 224 MKYLVCLVIDE 234 (1165)
Q Consensus 224 l~~~~lVVIDE 234 (1165)
+..+++||.-.
T Consensus 96 ~~~~~~Vi~~~ 106 (165)
T 1fuk_A 96 VQQVSLVINYD 106 (165)
T ss_dssp CCSCSEEEESS
T ss_pred cccCCEEEEeC
Confidence 67788887743
No 190
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=71.58 E-value=38 Score=37.18 Aligned_cols=35 Identities=29% Similarity=0.133 Sum_probs=23.2
Q ss_pred CChHHHHHHHHHhhc-CCeEEEcCCCchHHHHHHHHH
Q 037446 109 PVRDYQFAITKTALF-SNTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 109 Qlr~yQ~eal~~ll~-rnvIl~a~TGsGKTL~a~lpi 144 (1165)
--|.-+.+.+.. .. +.++|.++.|+|||......+
T Consensus 16 ~gR~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~ 51 (357)
T 2fna_A 16 FDREKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGI 51 (357)
T ss_dssp CCCHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHH
T ss_pred cChHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHH
Confidence 344445555544 33 568889999999998765444
No 191
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=69.92 E-value=12 Score=37.34 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=54.6
Q ss_pred HHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcC
Q 037446 146 NFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSG 220 (1165)
Q Consensus 146 ~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~ 220 (1165)
..+...+.+++||.|+++..+......+... | ..+..++|+.+..++.... ...+|+|+|. .+ ..
T Consensus 27 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-~---~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-~~-----~~ 96 (175)
T 2rb4_A 27 NIYGSITIGQAIIFCQTRRNAKWLTVEMIQD-G---HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-VC-----AR 96 (175)
T ss_dssp HHHTTSCCSEEEEECSCHHHHHHHHHHHHTT-T---CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-SC-----CT
T ss_pred HHHHhCCCCCEEEEECCHHHHHHHHHHHHHc-C---CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-ch-----hc
Confidence 3344446679999999999998888888763 3 4588899999877664332 3478999993 22 23
Q ss_pred ccCCCCccEEEE
Q 037446 221 TCLMKYLVCLVI 232 (1165)
Q Consensus 221 ~~~l~~~~lVVI 232 (1165)
.+.+..+++||.
T Consensus 97 Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 97 GIDVKQVTIVVN 108 (175)
T ss_dssp TTCCTTEEEEEE
T ss_pred CCCcccCCEEEE
Confidence 456777888885
No 192
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=69.76 E-value=11 Score=47.22 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=18.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.++++.+++|+|||.++-..+..
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHH
Confidence 67999999999999987665543
No 193
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=69.67 E-value=4.8 Score=47.31 Aligned_cols=110 Identities=11% Similarity=-0.013 Sum_probs=57.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH-HhCCCCceEEEEeCC--CChHHHHh---
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN-IVGIPQEWTIDMTGQ--ISPTKRAS--- 198 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k-l~g~~~~~v~~l~G~--~~~~~~~~--- 198 (1165)
=++|++++|+|||..++-.+.+.... +.+++|+.-- .-..|+...+.. ..++..... ..|. ....++..
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE-ms~~ql~~R~~~~~~~i~~~~l--~~g~~~l~~~~~~~l~~ 273 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE-MGKKENIKRLIVTAGSINAQKI--KAARRDFASEDWGKLSM 273 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS-SCTTHHHHHHHHHHSCCCHHHH--HHTGGGTCCSCHHHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC-CCHHHHHHHHHHHHcCCCHHHH--hcccCCCCHHHHHHHHH
Confidence 37889999999999888777776553 5678887654 333444444432 223321110 1122 11111111
Q ss_pred ---hcCCccEEEE-----cHHHHHHHHHcCccCCCCcc--EEEEcccccccC
Q 037446 199 ---FWKTKRVFFV-----TPQVLEKDIQSGTCLMKYLV--CLVIDEAHRATG 240 (1165)
Q Consensus 199 ---l~~~~dIlVa-----Tpq~L~~~l~~~~~~l~~~~--lVVIDEAHrl~~ 240 (1165)
......++|- |+..+...+..-. .-..++ +||||=.+.+..
T Consensus 274 a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~-~~~~~~~~lIVID~Lq~~~~ 324 (444)
T 3bgw_A 274 AIGEISNSNINIFDKAGQSVNYIWSKTRQTK-RKNPGKRVIVMIDYLQLLEP 324 (444)
T ss_dssp HHHHHHTSCEEEECCSSCBHHHHHHHHHHHH-HHSCSSCEEEEEECSTTSBC
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEEecHHhccC
Confidence 1113455542 4555554433211 112578 999999988754
No 194
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=69.63 E-value=21 Score=36.41 Aligned_cols=71 Identities=14% Similarity=0.070 Sum_probs=52.1
Q ss_pred CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCccCCCC
Q 037446 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTCLMKY 226 (1165)
Q Consensus 152 ~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~~l~~ 226 (1165)
..+++||.|+++.-+....+.+... |. .+..++|+.+..++.... ...+|+|+| +.+. ..+.+.+
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~~-g~---~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-~~~~-----~Gldi~~ 122 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLLK-GV---EAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-DVAS-----KGLDFPA 122 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHH-TC---CEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-HHHH-----TTCCCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc-CC---cEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-Cchh-----cCCCccc
Confidence 3468999999999999998888774 43 478899998876654332 357899999 3332 2456777
Q ss_pred ccEEEE
Q 037446 227 LVCLVI 232 (1165)
Q Consensus 227 ~~lVVI 232 (1165)
+++||.
T Consensus 123 v~~VI~ 128 (191)
T 2p6n_A 123 IQHVIN 128 (191)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888887
No 195
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=69.48 E-value=16 Score=36.63 Aligned_cols=77 Identities=9% Similarity=0.034 Sum_probs=54.6
Q ss_pred HHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCcc
Q 037446 148 FRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTC 222 (1165)
Q Consensus 148 L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~ 222 (1165)
+...+.+++||.|+++.-+....+.+... | ..+..++|+.+..++.... ...+|+|+|. .+ ...+
T Consensus 26 l~~~~~~~~lVF~~~~~~~~~l~~~L~~~-~---~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gl 95 (172)
T 1t5i_A 26 LDVLEFNQVVIFVKSVQRCIALAQLLVEQ-N---FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-LF-----GRGM 95 (172)
T ss_dssp HHHSCCSSEEEECSSHHHHHHHHHHHHHT-T---CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-CC-----STTC
T ss_pred HHhCCCCcEEEEECCHHHHHHHHHHHHhc-C---CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-ch-----hcCc
Confidence 34446678999999999999988888774 3 3478899998877654332 3578999993 32 2245
Q ss_pred CCCCccEEEEcc
Q 037446 223 LMKYLVCLVIDE 234 (1165)
Q Consensus 223 ~l~~~~lVVIDE 234 (1165)
.+..+++||.=.
T Consensus 96 di~~~~~Vi~~d 107 (172)
T 1t5i_A 96 DIERVNIAFNYD 107 (172)
T ss_dssp CGGGCSEEEESS
T ss_pred chhhCCEEEEEC
Confidence 667788888633
No 196
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=69.41 E-value=4.2 Score=46.51 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=28.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChh
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~ 164 (1165)
-++|.++.|+|||..++-.+.+... .+.+++|+..-..
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~--~g~~vlyi~~E~s 113 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQK--AGGTCAFIDAEHA 113 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCC
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHH--CCCeEEEEECCCC
Confidence 4788999999999988777766544 2457888876643
No 197
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=69.23 E-value=5 Score=45.60 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=28.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecCh
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSR 163 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr 163 (1165)
-++|.++.|+|||..++..+..... .+++++|+.-..
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~~E~ 99 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQA--AGGIAAFIDAEH 99 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCC
Confidence 4788999999999988777766544 356788887553
No 198
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=68.68 E-value=4.9 Score=45.82 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=29.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChh
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~ 164 (1165)
+-++|.++.|+|||..++..+.+... .+.+++|+.....
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~--~g~~vlyid~E~s 102 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHA 102 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence 34788999999999988877766554 3457888877533
No 199
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=67.71 E-value=16 Score=46.58 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+++++.+++|+|||.++-..+...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999876665544
No 200
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=67.59 E-value=6.4 Score=52.04 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=56.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCC-CeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCcc
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPD-GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKR 204 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~-~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~d 204 (1165)
-+|.|..|||||.+.+--|.+++..+.. .++|+|||. .+..+..+.+.+.++.. ...+
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~-q~TFt~~~rl~~~l~~~--------------------~~~~ 62 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPD-QMTFLMEYELAKTPDMG--------------------GMIR 62 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCG-GGHHHHHHHHTCCSSCS--------------------EESS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecC-cccHHHHHHHHHhhhhc--------------------ceee
Confidence 3688899999999988888887766554 689999998 56665444443332210 1136
Q ss_pred EEEEcHHHHHHHHHcCccCCCCccEEEEcccc
Q 037446 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVIDEAH 236 (1165)
Q Consensus 205 IlVaTpq~L~~~l~~~~~~l~~~~lVVIDEAH 236 (1165)
+-|.|...|...+.+... ....-|+|+..
T Consensus 63 ~~V~TFhsla~~il~~~g---~~~~~ild~~~ 91 (1166)
T 3u4q_B 63 AQVFSFSRLAWRVLQHTG---GMSRPFLTSTG 91 (1166)
T ss_dssp EEEECHHHHHHHHHHHHS---CTTSCEECHHH
T ss_pred eEEecHHHHHHHHHHHcC---CCcccCcCHHH
Confidence 889999988765443221 12345667654
No 201
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=67.56 E-value=16 Score=37.99 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=52.7
Q ss_pred CCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCccCCC
Q 037446 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTCLMK 225 (1165)
Q Consensus 151 ~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~~l~ 225 (1165)
...+++||.|+++.-+....+.+... | ..+..++|+.+..++.... ...+|+|+|. .+ ...+.+.
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~-~---~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-~~-----~~Gidi~ 98 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRL-G---HPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-VA-----ARGLDIP 98 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHH-T---CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-TT-----TCSSSCC
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHc-C---CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-hh-----hcCCCCc
Confidence 35679999999999999888888774 4 3478899999877664332 2468999993 22 2345677
Q ss_pred CccEEEE
Q 037446 226 YLVCLVI 232 (1165)
Q Consensus 226 ~~~lVVI 232 (1165)
++++||.
T Consensus 99 ~v~~Vi~ 105 (212)
T 3eaq_A 99 QVDLVVH 105 (212)
T ss_dssp CBSEEEE
T ss_pred cCcEEEE
Confidence 8888874
No 202
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=67.08 E-value=31 Score=35.36 Aligned_cols=98 Identities=16% Similarity=0.227 Sum_probs=60.4
Q ss_pred cCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC---CccceeeecccccccCCCCCHHHHHH
Q 037446 437 HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD---LVKATEFIGQSSGKASKGQSQKVQQA 513 (1165)
Q Consensus 437 ~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~---~i~~~~l~G~~~g~~~ggms~~eR~~ 513 (1165)
....++|-...+-.+...+. ....+.++||.|+++.-+..+++.++.... .+++..++| +.+...+.
T Consensus 58 ~~TGsGKT~~~~~~~~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g--------~~~~~~~~- 127 (220)
T 1t6n_A 58 AKSGMGKTAVFVLATLQQLE-PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFG--------GLSIKKDE- 127 (220)
T ss_dssp CCTTSCHHHHHHHHHHHHCC-CCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESC--------CSCHHHHH-
T ss_pred CCCCCchhhhhhHHHHHhhh-ccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeC--------CCChHHHH-
Confidence 34557777655544444433 222345999999999999999988877632 245555554 55554443
Q ss_pred HHHHHhcCCceEEEEccc-----c-cccccccCCCEEEE
Q 037446 514 VLEKFRAGGYNVIVATSI-----G-EEGLDIMEVDLVIC 546 (1165)
Q Consensus 514 il~~Fr~g~~~VLVATda-----~-~eGLDIp~vd~VI~ 546 (1165)
+.+..+...|+|+|.- . ...+++..+++||.
T Consensus 128 --~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 128 --EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp --HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred --HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 3345566789999942 1 22355666776664
No 203
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=66.00 E-value=5.2 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=18.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.+++.+|+|+|||..+-......
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999877655443
No 204
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=65.54 E-value=5.9 Score=45.17 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=28.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPL 165 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~L 165 (1165)
-++|.++.|+|||..+...+..... .+++++||.....+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHAL 101 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEeccccc
Confidence 3778899999999877766655433 35678888776444
No 205
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=65.49 E-value=4.9 Score=50.73 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=18.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+.+|+.+|.|+|||+.+-..+.+
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHT
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 67999999999999887665543
No 206
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=64.81 E-value=6.5 Score=40.17 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=23.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
+++++.+++|+|||..+...+..... .+.+++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~--~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK--RNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEE
Confidence 46899999999999987655544322 234555543
No 207
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=64.52 E-value=4.5 Score=55.73 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=31.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChh
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~ 164 (1165)
+++++.+|+|+|||..+...+.+... .+.+++|+.....
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~--~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHA 1466 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEEcccc
Confidence 57999999999999998877776543 4568999887743
No 208
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=64.40 E-value=6.1 Score=43.92 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=25.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
+++++.+++|+|||..+...+...... .+.+++++.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~-~g~~v~~~~ 188 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEK-KGVSTTLLH 188 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH-SCCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHh-cCCcEEEEE
Confidence 579999999999999887766655412 234565554
No 209
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=63.86 E-value=20 Score=42.74 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=17.2
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpi 144 (1165)
+++++.+|+|+|||..+-..+
T Consensus 65 ~GvLL~GppGtGKTtLaraIa 85 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVA 85 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999998865544
No 210
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=63.21 E-value=21 Score=37.49 Aligned_cols=97 Identities=14% Similarity=0.284 Sum_probs=53.6
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCC--ccceeeecccccccCCCCCHHHHHHHH
Q 037446 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVL 515 (1165)
Q Consensus 438 ~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~--i~~~~l~G~~~g~~~ggms~~eR~~il 515 (1165)
...++|-...+-.+...+. ....+.++||.++++.-+..+.+.++..+.. +.+..++| +... ....
T Consensus 75 pTGsGKT~~~~l~~l~~l~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g--------~~~~---~~~~ 142 (237)
T 3bor_A 75 QSGTGKTATFAISILQQLE-IEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIG--------GTNV---RNEM 142 (237)
T ss_dssp CSSHHHHHHHHHHHHHHCC-TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------------
T ss_pred CCCCcHHHHHHHHHHHHHH-hcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEEC--------CCch---HHHH
Confidence 4556777654433433332 2234679999999999999999999876431 33333443 3222 2223
Q ss_pred HHHhcCCceEEEEcc-----cccc-cccccCCCEEEE
Q 037446 516 EKFRAGGYNVIVATS-----IGEE-GLDIMEVDLVIC 546 (1165)
Q Consensus 516 ~~Fr~g~~~VLVATd-----a~~e-GLDIp~vd~VI~ 546 (1165)
+.+..+...|+|+|. .+.. .+++..+++||.
T Consensus 143 ~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 143 QKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp -----CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred HHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 445567788999993 3333 355666777664
No 211
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=62.35 E-value=18 Score=36.76 Aligned_cols=71 Identities=10% Similarity=0.017 Sum_probs=42.7
Q ss_pred CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhh-----cCCccEEEEcHHHHHHHHHcCccCCCC
Q 037446 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASF-----WKTKRVFFVTPQVLEKDIQSGTCLMKY 226 (1165)
Q Consensus 152 ~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l-----~~~~dIlVaTpq~L~~~l~~~~~~l~~ 226 (1165)
+.+++||.|+++.-+....+.+... | ..+..++|+.+..++... ....+|+|+| +.+.. .+.+..
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~-g---~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~-----Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE-G---YACTSIHGDRSQRDREEALHQFRSGKSPILVAT-AVAAR-----GLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT-T---CCEEEEC--------CHHHHHHHHTSSSEEEEE-C-----------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc-C---CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-Chhhc-----CCCccc
Confidence 4678999999999998888888763 3 357888998776554322 2357899999 34332 345667
Q ss_pred ccEEEE
Q 037446 227 LVCLVI 232 (1165)
Q Consensus 227 ~~lVVI 232 (1165)
+++||.
T Consensus 115 ~~~VI~ 120 (185)
T 2jgn_A 115 VKHVIN 120 (185)
T ss_dssp BSEEEE
T ss_pred CCEEEE
Confidence 888876
No 212
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=61.36 E-value=8.8 Score=44.59 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=32.3
Q ss_pred cCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHH
Q 037446 123 FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVM 167 (1165)
Q Consensus 123 ~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~ 167 (1165)
..+++|.++||+|||......+.+.+. .+..++|+=|..++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~--~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLL--RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHH--TTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEeCCCchhH
Confidence 479999999999999975445555544 3467888889877753
No 213
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=60.78 E-value=5.5 Score=38.67 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=16.2
Q ss_pred CCeEEEcCCCchHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAV 142 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~l 142 (1165)
.++++.+++|+|||..+-.
T Consensus 28 ~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp SCEEEEEETTCCHHHHHGG
T ss_pred CcEEEECCCCccHHHHHHH
Confidence 6899999999999986543
No 214
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=59.81 E-value=11 Score=44.91 Aligned_cols=47 Identities=13% Similarity=0.012 Sum_probs=32.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEAC 173 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~ 173 (1165)
=++|++++|+|||..++-.+.+.... .+.+++|+.-- .-..|....+
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESS-SCHHHHHHHH
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEecc-CCHHHHHHHH
Confidence 37889999999999887777665432 24578887755 3344555544
No 215
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=59.76 E-value=9 Score=46.18 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=18.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
..+++.+|+|+|||..+-.....
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999876655443
No 216
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=59.32 E-value=46 Score=38.67 Aligned_cols=53 Identities=23% Similarity=0.229 Sum_probs=31.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe--cChhHHHHHHHHHHHHhCC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA--PSRPLVMQQIEACHNIVGI 179 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv--Ptr~La~Q~~~e~~kl~g~ 179 (1165)
-+++.++.|+|||.++...+..+. . .+++++++. +.+..+..+...+....+.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~-~-~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv 154 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYK-G-KGRRPLLVAADTQRPAAREQLRLLGEKVGV 154 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH-T-TTCCEEEEECCSSCHHHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-H-cCCeEEEeeccccCchhHHHHHHhcccCCc
Confidence 356779999999988777665543 2 356676665 3344444333444443444
No 217
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=59.09 E-value=61 Score=38.53 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHHHHh-CCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEE
Q 037446 134 LGKTLIAAVVIYNFFRW-FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFF 207 (1165)
Q Consensus 134 sGKTL~a~lpil~~L~~-~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlV 207 (1165)
..+....+..+...+.. ....++||.|+++.-+....+.+.+.+.. ...+..++|+.....+..+. ...+|+|
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC-CceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 34444444444444433 55679999999999999999999886532 34588899999877665432 3578999
Q ss_pred EcHHHHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHc
Q 037446 208 VTPQVLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS 253 (1165)
Q Consensus 208 aTpq~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~ 253 (1165)
+|. .....+.+.++++||.-..-. +....++++.+
T Consensus 398 aT~------~~~~GiDip~v~~VI~~~~p~-----s~~~y~Qr~GR 432 (563)
T 3i5x_A 398 CTD------VGARGMDFPNVHEVLQIGVPS-----ELANYIHRIGR 432 (563)
T ss_dssp ECG------GGTSSCCCTTCCEEEEESCCS-----STTHHHHHHTT
T ss_pred Ecc------hhhcCCCcccCCEEEEECCCC-----chhhhhhhcCc
Confidence 995 222356777888888643322 33344555554
No 218
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=58.63 E-value=11 Score=39.32 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=33.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
.-+++.+++|+|||..+...+..... .+.+++++.-. .-..+..+.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~--~~~~v~~~~~e-~~~~~~~~~~~~ 72 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLK--MGEPGIYVALE-EHPVQVRQNMAQ 72 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEESS-SCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcc-CCHHHHHHHHHH
Confidence 34788999999999987766665543 34678887755 344555555543
No 219
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=58.43 E-value=8 Score=48.77 Aligned_cols=21 Identities=48% Similarity=0.581 Sum_probs=17.3
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpi 144 (1165)
+.+|+.+|.|+|||+.+-..+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 579999999999999865443
No 220
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=58.36 E-value=46 Score=33.51 Aligned_cols=98 Identities=16% Similarity=0.246 Sum_probs=58.7
Q ss_pred cCCCChHHHHHHHHHHHhhccc--CCCCCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHH
Q 037446 437 HGAQSPKLSKMLEVLVDHFKTK--DPKHSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAV 514 (1165)
Q Consensus 437 ~~~~s~Kl~~LlelL~~~~~~~--~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~i 514 (1165)
....++|-...+-.+...+... ...+.++||.++++..+..+.+.+......+++..++| +.+...+...
T Consensus 45 ~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 116 (207)
T 2gxq_A 45 ARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYG--------GTGYGKQKEA 116 (207)
T ss_dssp CCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECS--------SSCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEEC--------CCChHHHHHH
Confidence 3456777765443333333201 23467899999999999999999988764456655655 3333332222
Q ss_pred HHHHhcCCceEEEEcc-----ccc-ccccccCCCEEEE
Q 037446 515 LEKFRAGGYNVIVATS-----IGE-EGLDIMEVDLVIC 546 (1165)
Q Consensus 515 l~~Fr~g~~~VLVATd-----a~~-eGLDIp~vd~VI~ 546 (1165)
+. ....|+|+|. .+. ..+++..+++||.
T Consensus 117 ~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 117 LL----RGADAVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp HH----HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred hh----CCCCEEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 21 2467999994 222 2345666776664
No 221
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=58.15 E-value=40 Score=37.00 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=22.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
-+.+.++.|+|||..+...+..+.. .+++++++.
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~ 133 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVA 133 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEec
Confidence 3556799999999877666544422 356676664
No 222
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=57.59 E-value=89 Score=37.45 Aligned_cols=88 Identities=13% Similarity=0.062 Sum_probs=61.5
Q ss_pred HHHHHHHHHh-CCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHH
Q 037446 141 AVVIYNFFRW-FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLE 214 (1165)
Q Consensus 141 ~lpil~~L~~-~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~ 214 (1165)
+-.+...+.. .+..++||.|+++.-+....+.+.+.++ ....+..++|+....++.... ...+|+|+|.
T Consensus 275 ~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~---- 349 (579)
T 3sqw_A 275 VEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD---- 349 (579)
T ss_dssp HHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG----
T ss_pred HHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc----
Confidence 3333444333 5567999999999999999999988653 234588899999877664432 3578999995
Q ss_pred HHHHcCccCCCCccEEEEccc
Q 037446 215 KDIQSGTCLMKYLVCLVIDEA 235 (1165)
Q Consensus 215 ~~l~~~~~~l~~~~lVVIDEA 235 (1165)
.....+.+.++++||.-..
T Consensus 350 --~~~~GiDip~v~~VI~~~~ 368 (579)
T 3sqw_A 350 --VGARGMDFPNVHEVLQIGV 368 (579)
T ss_dssp --GGTSSCCCTTCCEEEEESC
T ss_pred --hhhcCCCcccCCEEEEcCC
Confidence 1223567778898886543
No 223
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=57.38 E-value=46 Score=35.22 Aligned_cols=96 Identities=18% Similarity=0.273 Sum_probs=57.0
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC--CccceeeecccccccCCCCCHHHHHHHH
Q 037446 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD--LVKATEFIGQSSGKASKGQSQKVQQAVL 515 (1165)
Q Consensus 438 ~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~--~i~~~~l~G~~~g~~~ggms~~eR~~il 515 (1165)
...++|-....-.+...+. ....+.++||.++++.-+..+++.++..+. .+.+..++| +.....+...+
T Consensus 88 ~TGsGKT~~~~~~il~~l~-~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~ 158 (249)
T 3ber_A 88 ETGSGKTGAFALPILNALL-ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVG--------GIDSMSQSLAL 158 (249)
T ss_dssp CTTSCHHHHHHHHHHHHHH-HSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECT--------TSCHHHHHHHH
T ss_pred CCCCCchhHhHHHHHHHHh-cCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEEC--------CCChHHHHHHh
Confidence 4567776654333333322 223456899999999999999888876521 145555554 55544433322
Q ss_pred HHHhcCCceEEEEccc-----cc--ccccccCCCEEEE
Q 037446 516 EKFRAGGYNVIVATSI-----GE--EGLDIMEVDLVIC 546 (1165)
Q Consensus 516 ~~Fr~g~~~VLVATda-----~~--eGLDIp~vd~VI~ 546 (1165)
.+...|+|+|.- +. .++++..+++||.
T Consensus 159 ----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 159 ----AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp ----HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred ----cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 246789999942 11 3456666776664
No 224
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=56.88 E-value=11 Score=39.53 Aligned_cols=49 Identities=24% Similarity=0.122 Sum_probs=31.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
-++|++++|+|||..++-.+.+.... .+.+++|+.-. .-..+..+.+..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESS-SCHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeeccc-CCHHHHHHHHHH
Confidence 47899999999998877666554332 23467777654 445555555543
No 225
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.78 E-value=9.2 Score=44.73 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=24.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
+++|+.+|+|+|||+.+-..+-+. +..++.+...
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~-----~~~f~~v~~s 249 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQT-----NATFLKLAAP 249 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGG
T ss_pred CeeEEECcCCCCHHHHHHHHHHHh-----CCCEEEEehh
Confidence 689999999999999876666554 3345554443
No 226
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=54.01 E-value=49 Score=34.32 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=57.4
Q ss_pred cCCCChHHHH-HHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC---CccceeeecccccccCCCCCHHHHH
Q 037446 437 HGAQSPKLSK-MLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD---LVKATEFIGQSSGKASKGQSQKVQQ 512 (1165)
Q Consensus 437 ~~~~s~Kl~~-LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~---~i~~~~l~G~~~g~~~ggms~~eR~ 512 (1165)
....++|-.. ++-++.... ....+.++||.++++.-+..+.+.++..+. .+++..++| +....++.
T Consensus 68 a~TGsGKT~~~~l~~l~~l~--~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~ 137 (230)
T 2oxc_A 68 AKSGTGKTCVFSTIALDSLV--LENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIG--------GTPLSQDK 137 (230)
T ss_dssp CCTTSSHHHHHHHHHHHHCC--TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECT--------TSCHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHH--hcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeC--------CCCHHHHH
Confidence 3456777765 333443322 223467999999999999999999987642 244444444 55655544
Q ss_pred HHHHHHhcCCceEEEEccc-----c-cccccccCCCEEEE
Q 037446 513 AVLEKFRAGGYNVIVATSI-----G-EEGLDIMEVDLVIC 546 (1165)
Q Consensus 513 ~il~~Fr~g~~~VLVATda-----~-~eGLDIp~vd~VI~ 546 (1165)
..+ ....|+|+|.- + ...+++..+++||.
T Consensus 138 ~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 138 TRL-----KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp HHT-----TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred Hhc-----cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 333 24789999852 1 12345555666654
No 227
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=53.86 E-value=34 Score=39.10 Aligned_cols=94 Identities=15% Similarity=0.040 Sum_probs=59.6
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeC--------CCChHHHHhhc---
Q 037446 132 TGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTG--------QISPTKRASFW--- 200 (1165)
Q Consensus 132 TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G--------~~~~~~~~~l~--- 200 (1165)
..++|.....-.+...+...++.++||.++++.-+....+.+... | ..+..++| +.+..++..+.
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F 415 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD-G---IKAKRFVGQASKENDRGLSQREQKLILDEF 415 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT-T---CCEEEECCSSCC-------CCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc-C---CCcEEEeccccccccccCCHHHHHHHHHHH
Confidence 556676554444444333356789999999999999888888774 3 34778888 55544443222
Q ss_pred --CCccEEEEcHHHHHHHHHcCccCCCCccEEEEccc
Q 037446 201 --KTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDEA 235 (1165)
Q Consensus 201 --~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDEA 235 (1165)
...+|+|+| +.+. ..+.+..+++||+-+.
T Consensus 416 ~~~~~~vLv~T-~~~~-----~Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 416 ARGEFNVLVAT-SVGE-----EGLDVPEVDLVVFYEP 446 (494)
T ss_dssp HHTSCSEEEEC-GGGG-----GGGGSTTCCEEEESSC
T ss_pred hcCCceEEEEC-Cccc-----cCCCchhCCEEEEeCC
Confidence 346899999 3332 2456777888886443
No 228
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=53.56 E-value=60 Score=36.16 Aligned_cols=98 Identities=15% Similarity=0.197 Sum_probs=61.0
Q ss_pred cCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC---CccceeeecccccccCCCCCHHHHHH
Q 037446 437 HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD---LVKATEFIGQSSGKASKGQSQKVQQA 513 (1165)
Q Consensus 437 ~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~---~i~~~~l~G~~~g~~~ggms~~eR~~ 513 (1165)
....++|-...+-.+...+. ....+.++||.|+++.-+..+++.+..... .+++..++| +.+...+..
T Consensus 52 a~TGsGKT~~~~~~~~~~l~-~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~ 122 (391)
T 1xti_A 52 AKSGMGKTAVFVLATLQQLE-PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFG--------GLSIKKDEE 122 (391)
T ss_dssp CSSCSSHHHHHHHHHHHHCC-CCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECT--------TSCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhhc-ccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeC--------CCCHHHHHH
Confidence 34567777654444444433 233456999999999999999888877631 255555555 555544443
Q ss_pred HHHHHhcCCceEEEEccc-c-----cccccccCCCEEEE
Q 037446 514 VLEKFRAGGYNVIVATSI-G-----EEGLDIMEVDLVIC 546 (1165)
Q Consensus 514 il~~Fr~g~~~VLVATda-~-----~eGLDIp~vd~VI~ 546 (1165)
.+..+...|+|+|.- + ...+++..+++||.
T Consensus 123 ---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 123 ---VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp ---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred ---HHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 344566789999942 1 22355667777774
No 229
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.84 E-value=9.8 Score=44.53 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=20.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+++|+.+|+|+|||+.+-..+.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 689999999999999877666554
No 230
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=52.30 E-value=69 Score=32.20 Aligned_cols=96 Identities=11% Similarity=0.171 Sum_probs=55.9
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC---CccceeeecccccccCCCCCHHHHHHH
Q 037446 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD---LVKATEFIGQSSGKASKGQSQKVQQAV 514 (1165)
Q Consensus 438 ~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~---~i~~~~l~G~~~g~~~ggms~~eR~~i 514 (1165)
...++|-...+-.+...+. ....+.++||.++++.-+..+++.+..... ...+..++| +.+..+...
T Consensus 48 pTGsGKT~~~~~~~~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~- 117 (206)
T 1vec_A 48 KNGTGKSGAYLIPLLERLD-LKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTG--------GTNLRDDIM- 117 (206)
T ss_dssp CSSSTTHHHHHHHHHHHCC-TTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECS--------SSCHHHHHH-
T ss_pred CCCCchHHHHHHHHHHHhc-ccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeC--------CccHHHHHH-
Confidence 4567777554433333332 233457899999999999999988877642 134444444 455443322
Q ss_pred HHHHhcCCceEEEEcc-----cccc-cccccCCCEEEE
Q 037446 515 LEKFRAGGYNVIVATS-----IGEE-GLDIMEVDLVIC 546 (1165)
Q Consensus 515 l~~Fr~g~~~VLVATd-----a~~e-GLDIp~vd~VI~ 546 (1165)
.+ .+...|+|+|. .+.. .+++..+++||.
T Consensus 118 --~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 118 --RL-DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp --HT-TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred --hc-CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 22 34678999995 1222 234556666664
No 231
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=51.16 E-value=84 Score=39.40 Aligned_cols=83 Identities=12% Similarity=0.176 Sum_probs=57.4
Q ss_pred HHHHHHhCCCCeEEEEecChhHHHHHHHHHHHH-------hCCCCceEEEEeCCCChHHHHhhcC----------CccEE
Q 037446 144 IYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNI-------VGIPQEWTIDMTGQISPTKRASFWK----------TKRVF 206 (1165)
Q Consensus 144 il~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl-------~g~~~~~v~~l~G~~~~~~~~~l~~----------~~dIl 206 (1165)
+.........+++||.+|++.-+....+.+.+. .......+..++|+....++..+.. ..+||
T Consensus 294 l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVl 373 (773)
T 2xau_A 294 VLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVV 373 (773)
T ss_dssp HHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEE
T ss_pred HHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEE
Confidence 334334446789999999999999988888752 2334567889999999877764432 35799
Q ss_pred EEcHHHHHHHHHcCccCCCCccEEEE
Q 037446 207 FVTPQVLEKDIQSGTCLMKYLVCLVI 232 (1165)
Q Consensus 207 VaTpq~L~~~l~~~~~~l~~~~lVVI 232 (1165)
|+|. .+.. .+.+.++++||-
T Consensus 374 VAT~-iae~-----GidIp~v~~VId 393 (773)
T 2xau_A 374 ISTN-IAET-----SLTIDGIVYVVD 393 (773)
T ss_dssp EECT-HHHH-----TCCCTTEEEEEE
T ss_pred EeCc-HHHh-----CcCcCCeEEEEe
Confidence 9994 3332 456677777663
No 232
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=50.85 E-value=78 Score=36.78 Aligned_cols=53 Identities=25% Similarity=0.228 Sum_probs=32.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe--cChhHHHHHHHHHHHHhC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA--PSRPLVMQQIEACHNIVG 178 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv--Ptr~La~Q~~~e~~kl~g 178 (1165)
.+++++..|+|||.++.-.+..+... .+.+++++. |.+..+..+........+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~-~G~kVllvd~D~~r~~a~~ql~~~~~~~~ 156 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREK-HKKKVLVVSADVYRPAAIKQLETLAEQVG 156 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-SCCCEEEEECCCSSTTHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEEecCCCCccHHHHHHhhcccCC
Confidence 46677999999999888877665442 245676665 444444444433333333
No 233
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.73 E-value=12 Score=43.82 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=19.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+++|+.+|+|+|||+.+-..+.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 679999999999999877665554
No 234
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=48.93 E-value=1.4e+02 Score=34.69 Aligned_cols=92 Identities=10% Similarity=0.044 Sum_probs=59.7
Q ss_pred CCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCccCCCCc
Q 037446 153 DGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTCLMKYL 227 (1165)
Q Consensus 153 ~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~~l~~~ 227 (1165)
++..+|++....-+....+.+... + ..+..++|+....++..+. ...+|+|+|++.+.. .+.+.++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~-~---~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v 417 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNE-Y---DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNL 417 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT-C---SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHc-C---CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccC
Confidence 455555666656665555555543 2 2588899999876654332 346899999988876 4567889
Q ss_pred cEEEEcccccccCccchHHHHHHHHcCC
Q 037446 228 VCLVIDEAHRATGNYAYCTAIRELMSVP 255 (1165)
Q Consensus 228 ~lVVIDEAHrl~~~~~~~~~l~~L~~~~ 255 (1165)
++||+..+..-.. .+.+.+-+..+..
T Consensus 418 ~~vi~~~~~~s~~--~~~Q~~GR~gR~g 443 (510)
T 2oca_A 418 HHVVLAHGVKSKI--IVLQTIGRVLRKH 443 (510)
T ss_dssp EEEEESSCCCSCC--HHHHHHHHHHTTT
T ss_pred cEEEEeCCCCCHH--HHHHHHhcccccC
Confidence 9999987774332 4555555554443
No 235
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=48.60 E-value=33 Score=37.85 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=51.4
Q ss_pred CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCccCCCC
Q 037446 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTCLMKY 226 (1165)
Q Consensus 152 ~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~~l~~ 226 (1165)
..+++||.|+++.-+....+.+... ...+..++|+.+..++.... ...+|+|+|- . -...+.+..
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-v-----a~~Gidi~~ 96 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-V-----AARGLDIPQ 96 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-T-----TTCSTTCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-h-----hhcCccccc
Confidence 4789999999998888887777653 34578899998876654332 3478999993 2 223556778
Q ss_pred ccEEEE
Q 037446 227 LVCLVI 232 (1165)
Q Consensus 227 ~~lVVI 232 (1165)
+++||.
T Consensus 97 v~~VI~ 102 (300)
T 3i32_A 97 VDLVVH 102 (300)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 888885
No 236
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=48.60 E-value=28 Score=38.56 Aligned_cols=48 Identities=19% Similarity=0.064 Sum_probs=32.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
=++|++++|+|||..++-.+.+.... +.+++|+.-- .-..|....+..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~--g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT--TCEEEEEESS-SCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEECC-CCHHHHHHHHHH
Confidence 37889999999998777766665442 3678888755 444555555443
No 237
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=47.57 E-value=93 Score=32.41 Aligned_cols=98 Identities=17% Similarity=0.182 Sum_probs=56.9
Q ss_pred cCCCChHHHH-HHHHHHHhhcc---cCCCCCeEEEEeCchHHHHHHHHHHHhcCC--CccceeeecccccccCCCCCHHH
Q 037446 437 HGAQSPKLSK-MLEVLVDHFKT---KDPKHSRVIIFSNFRGSVRDIMNALATIGD--LVKATEFIGQSSGKASKGQSQKV 510 (1165)
Q Consensus 437 ~~~~s~Kl~~-LlelL~~~~~~---~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~--~i~~~~l~G~~~g~~~ggms~~e 510 (1165)
....++|-.. ++-++...... ....+.++||.++++.-+..+.+.++.... .+.+..++| +.+...
T Consensus 73 apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~ 144 (242)
T 3fe2_A 73 AQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYG--------GAPKGP 144 (242)
T ss_dssp ECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECT--------TSCHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEEC--------CCChHH
Confidence 3456777654 33333222210 113467899999999999988887766410 155555554 566655
Q ss_pred HHHHHHHHhcCCceEEEEcc-----cccc-cccccCCCEEEE
Q 037446 511 QQAVLEKFRAGGYNVIVATS-----IGEE-GLDIMEVDLVIC 546 (1165)
Q Consensus 511 R~~il~~Fr~g~~~VLVATd-----a~~e-GLDIp~vd~VI~ 546 (1165)
+...+. . ..+|+|+|. .+.. .+++..+++||.
T Consensus 145 ~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 145 QIRDLE---R-GVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp HHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred HHHHhc---C-CCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 544443 2 468999994 2222 345666777664
No 238
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=46.53 E-value=43 Score=37.64 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=61.4
Q ss_pred CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCccCCCC
Q 037446 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTCLMKY 226 (1165)
Q Consensus 152 ~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~~l~~ 226 (1165)
..+++||.|+++.-+....+.+.+. + ..+..++|+....++..+. ...+|+|+|. .-...+.+.+
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~-~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~ 334 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKE-G---HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQ 334 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHT-T---CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTT
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhC-C---CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccC
Confidence 5679999999999999998888774 3 3477889998877665432 3478999994 2233567778
Q ss_pred ccEEEEccccccc-CccchHHHHHHHHcC
Q 037446 227 LVCLVIDEAHRAT-GNYAYCTAIRELMSV 254 (1165)
Q Consensus 227 ~~lVVIDEAHrl~-~~~~~~~~l~~L~~~ 254 (1165)
+++||.-..-.-. .+.+....++++.+.
T Consensus 335 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~ 363 (412)
T 3fht_A 335 VSVVINFDLPVDKDGNPDNETYLHRIGRT 363 (412)
T ss_dssp EEEEEESSCCBCSSSSBCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCCCCcchheeecccCcc
Confidence 8888853322111 112344555655543
No 239
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=45.61 E-value=62 Score=35.48 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=53.0
Q ss_pred CCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCccCCC
Q 037446 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTCLMK 225 (1165)
Q Consensus 151 ~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~~l~ 225 (1165)
....++||.|+++.-+....+.+.+. + ..+..++|+.+...+.... ...+|+|+|. .+.. .+.+.
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~-~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~-----Gid~~ 305 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDI-G---FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-VMSR-----GIDVN 305 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHT-T---CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-THHH-----HCCCS
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhc-C---CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-hhhc-----CCCcc
Confidence 45678999999999999988888774 3 3478889998876654332 2468999993 3333 34667
Q ss_pred CccEEEEc
Q 037446 226 YLVCLVID 233 (1165)
Q Consensus 226 ~~~lVVID 233 (1165)
++++||.-
T Consensus 306 ~~~~Vi~~ 313 (367)
T 1hv8_A 306 DLNCVINY 313 (367)
T ss_dssp CCSEEEES
T ss_pred cCCEEEEe
Confidence 78888864
No 240
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=43.61 E-value=61 Score=38.53 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=51.0
Q ss_pred CCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcc
Q 037446 462 HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATS 530 (1165)
Q Consensus 462 ~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATd 530 (1165)
..++||.++++.-+......|...| +.+..++| +.+..++..++..+..|..++|++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~g--i~~~~l~~--------~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANG--VAAACLNS--------TQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT--CCEEEECT--------TSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcC--CcEEEEeC--------CCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 4689999999999999999999888 77777766 56888888899999999999999984
No 241
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=43.50 E-value=39 Score=35.29 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=55.1
Q ss_pred cCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC--CccceeeecccccccCCCCCHHHHHHH
Q 037446 437 HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD--LVKATEFIGQSSGKASKGQSQKVQQAV 514 (1165)
Q Consensus 437 ~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~--~i~~~~l~G~~~g~~~ggms~~eR~~i 514 (1165)
....++|-...+-.+...+......+.++||.++++.-+..+++.+..... .+.+..++|.. . ....
T Consensus 73 a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~ 141 (245)
T 3dkp_A 73 APTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAA--------V---AAKK 141 (245)
T ss_dssp CCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHH--------H---HHTT
T ss_pred CCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCc--------c---HHHH
Confidence 345677775533333233321233567899999999999999999987632 13333333311 0 0101
Q ss_pred HHHHhcCCceEEEEcc-----cccc---cccccCCCEEEE
Q 037446 515 LEKFRAGGYNVIVATS-----IGEE---GLDIMEVDLVIC 546 (1165)
Q Consensus 515 l~~Fr~g~~~VLVATd-----a~~e---GLDIp~vd~VI~ 546 (1165)
......+..+|+|+|. .+.. ++++..+++||.
T Consensus 142 ~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 142 FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 1112245678999983 1212 466777777764
No 242
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=43.49 E-value=14 Score=40.22 Aligned_cols=23 Identities=43% Similarity=0.456 Sum_probs=18.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.++++.+++|+|||..+-..+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999887665543
No 243
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=49.41 E-value=5 Score=40.17 Aligned_cols=72 Identities=14% Similarity=0.068 Sum_probs=47.3
Q ss_pred CCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcC-----CccEEEEcHHHHHHHHHcCccCCC
Q 037446 151 FPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWK-----TKRVFFVTPQVLEKDIQSGTCLMK 225 (1165)
Q Consensus 151 ~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~-----~~dIlVaTpq~L~~~l~~~~~~l~ 225 (1165)
...+++||.|+++.-+....+.+... + ..+..++|+....++..... ..+|+|+| ..+.. .+.+.
T Consensus 28 ~~~~~~iVF~~~~~~~~~l~~~L~~~-~---~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~-----Gid~~ 97 (170)
T 2yjt_D 28 PEATRSIVFVRKRERVHELANWLREA-G---INNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-DVAAR-----GIDIP 97 (170)
Confidence 34568999999998888887777663 3 34667888877665543322 35788888 34333 23455
Q ss_pred CccEEEE
Q 037446 226 YLVCLVI 232 (1165)
Q Consensus 226 ~~~lVVI 232 (1165)
.+++||.
T Consensus 98 ~~~~Vi~ 104 (170)
T 2yjt_D 98 DVSHVFN 104 (170)
Confidence 5666665
No 244
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=43.15 E-value=77 Score=32.76 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=37.3
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHhcCCC--ccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcc
Q 037446 461 KHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATS 530 (1165)
Q Consensus 461 ~~~kvIVF~~sr~~ae~L~~~L~~~g~~--i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATd 530 (1165)
.+.++||.++++.-+..+.+.++..+.. +.+..++| +.+...+... + +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~---~--~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIG--------GKDLKHEAER---I--NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECC--------C--CHHHHHH---H--TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEEC--------CCCHHHHHHh---C--CCCCEEEECH
Confidence 4678999999999999999999876532 44444554 4433332222 2 3578999984
No 245
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=42.69 E-value=65 Score=36.08 Aligned_cols=90 Identities=7% Similarity=0.004 Sum_probs=60.0
Q ss_pred HhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCccC
Q 037446 149 RWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTCL 223 (1165)
Q Consensus 149 ~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~~ 223 (1165)
.....+++||.|+++.-+....+.+... | ..+..++|+.....+.... ...+|+|+|. . -...+.
T Consensus 254 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~-----~~~Gid 323 (400)
T 1s2m_A 254 SKLQINQAIIFCNSTNRVELLAKKITDL-G---YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-L-----LTRGID 323 (400)
T ss_dssp HHSCCSEEEEECSSHHHHHHHHHHHHHH-T---CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-C-----SSSSCC
T ss_pred hhcCCCcEEEEEecHHHHHHHHHHHHhc-C---CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-c-----cccCCC
Confidence 3446679999999999999988888875 3 3477889998876654332 2468999993 1 123456
Q ss_pred CCCccEEEEcccccccCccchHHHHHHHHc
Q 037446 224 MKYLVCLVIDEAHRATGNYAYCTAIRELMS 253 (1165)
Q Consensus 224 l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~ 253 (1165)
+..+++||.-..- .+....++++.+
T Consensus 324 ip~~~~Vi~~~~p-----~s~~~~~Qr~GR 348 (400)
T 1s2m_A 324 IQAVNVVINFDFP-----KTAETYLHRIGR 348 (400)
T ss_dssp CTTEEEEEESSCC-----SSHHHHHHHHCB
T ss_pred ccCCCEEEEeCCC-----CCHHHHHHhcch
Confidence 7778888753221 134444555544
No 246
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=42.61 E-value=20 Score=40.90 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=30.2
Q ss_pred cCCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChh
Q 037446 123 FSNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164 (1165)
Q Consensus 123 ~rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~ 164 (1165)
..+++|.++||+|||...-..+.+... .+.+++|+=|..+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~--~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYM--QGSRVIIIDPERE 74 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEESSCC
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHH--CCCEEEEEeCCcC
Confidence 368999999999999887666655543 4567888888754
No 247
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=42.49 E-value=29 Score=45.81 Aligned_cols=54 Identities=11% Similarity=0.165 Sum_probs=43.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhC----------CCCeEEEEecChhHHHHHHHHHHHHh
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWF----------PDGKIVFAAPSRPLVMQQIEACHNIV 177 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~----------~~~rvLILvPtr~La~Q~~~e~~kl~ 177 (1165)
+..+|.|.-|||||.+-..-++.++... ....+|+|+=|+.-+....+.+.+.+
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 5679999999999999888787777531 23479999999999988888877654
No 248
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=42.12 E-value=79 Score=35.59 Aligned_cols=71 Identities=10% Similarity=0.020 Sum_probs=52.6
Q ss_pred CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCccCCCC
Q 037446 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTCLMKY 226 (1165)
Q Consensus 152 ~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~~l~~ 226 (1165)
..+++||.|+++.-+....+.+.+. + ..+..++|+....++.... ...+|+|+|. .+ ...+.+.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-~~-----~~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE-G---YACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VA-----ARGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-T---CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-HH-----HTTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC-C---CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-hh-----hcCCCccc
Confidence 4678999999999999988888773 3 3578899999876654332 3578999995 22 22457778
Q ss_pred ccEEEE
Q 037446 227 LVCLVI 232 (1165)
Q Consensus 227 ~~lVVI 232 (1165)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888886
No 249
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=42.04 E-value=15 Score=40.68 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=18.7
Q ss_pred cCCeEEEcCCCchHHHHHHHHHH
Q 037446 123 FSNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 123 ~rnvIl~a~TGsGKTL~a~lpil 145 (1165)
++++++.+++|+|||..+-....
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 37999999999999987655443
No 250
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=41.91 E-value=21 Score=42.62 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=26.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCC-CCeEEEEecC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFP-DGKIVFAAPS 162 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~-~~rvLILvPt 162 (1165)
.+++|++.||||||.+.-..+..++.... ..--++++..
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDp 207 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDP 207 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECC
Confidence 57999999999999987777766665433 3333444444
No 251
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=41.88 E-value=20 Score=48.87 Aligned_cols=43 Identities=19% Similarity=0.090 Sum_probs=30.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQ 169 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~ 169 (1165)
..++|.+++|+|||..++..+.+... .+.+++|+.-- ....|.
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~--~g~~VlyiS~E-es~~ql 775 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAE-HALDPI 775 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECTT-SCCCHH
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHH--cCCCeEEEecc-chHHHH
Confidence 35888999999999988877776654 34578887655 334443
No 252
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=41.10 E-value=13 Score=41.94 Aligned_cols=23 Identities=48% Similarity=0.556 Sum_probs=18.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.++++.+|+|+|||.++-..+..
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999987665543
No 253
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=40.99 E-value=14 Score=39.38 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=18.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+++++.+++|+|||..+-..+..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 57899999999999887655443
No 254
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=40.94 E-value=68 Score=35.62 Aligned_cols=95 Identities=9% Similarity=0.059 Sum_probs=63.9
Q ss_pred HhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCccC
Q 037446 149 RWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTCL 223 (1165)
Q Consensus 149 ~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~~ 223 (1165)
.....+++||.|+++.-+....+.++.. + ..+..++|+.+..++.... ...+|+|+|. .-...+.
T Consensus 239 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~-~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gid 308 (395)
T 3pey_A 239 GLMTIGSSIIFVATKKTANVLYGKLKSE-G---HEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGID 308 (395)
T ss_dssp TTTTSSEEEEECSCHHHHHHHHHHHHHT-T---CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCC
T ss_pred HhccCCCEEEEeCCHHHHHHHHHHHHhc-C---CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCC
Confidence 3345679999999999999888888774 3 3477889998877664432 2468999994 2234567
Q ss_pred CCCccEEEEcccccccC-ccchHHHHHHHHc
Q 037446 224 MKYLVCLVIDEAHRATG-NYAYCTAIRELMS 253 (1165)
Q Consensus 224 l~~~~lVVIDEAHrl~~-~~~~~~~l~~L~~ 253 (1165)
+.++++||.-..-.+.. ..+....++.+.+
T Consensus 309 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR 339 (395)
T 3pey_A 309 IPTVSMVVNYDLPTLANGQADPATYIHRIGR 339 (395)
T ss_dssp CTTEEEEEESSCCBCTTSSBCHHHHHHHHTT
T ss_pred cccCCEEEEcCCCCCCcCCCCHHHhhHhccc
Confidence 78899998765554321 1234445555554
No 255
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=40.60 E-value=33 Score=37.37 Aligned_cols=48 Identities=15% Similarity=-0.056 Sum_probs=31.0
Q ss_pred HHHHHHHHCCCCCCCCCCChHHHHHHHHHhhc----C-CeEEEcCCCchHHHHHHHHHH
Q 037446 92 VQIDAEAAKTWIYPVNVPVRDYQFAITKTALF----S-NTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 92 ~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll~----r-nvIl~a~TGsGKTL~a~lpil 145 (1165)
.+.+-|..+|+. +...-..+..++.+ + .+++.+|.|+|||+.+...+.
T Consensus 74 ~i~~~l~~qg~~------~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 74 RIYKILELNGYD------PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTCC------HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCC------HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 577777778865 22222334444443 2 378899999999998775543
No 256
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=39.80 E-value=1.5e+02 Score=34.04 Aligned_cols=85 Identities=8% Similarity=-0.015 Sum_probs=58.5
Q ss_pred CeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCccCCCCcc
Q 037446 154 GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTCLMKYLV 228 (1165)
Q Consensus 154 ~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~~l~~~~ 228 (1165)
.++||.|+++.-+....+.+.+. | ..+..++|+....+|.... ...+|+|+|. .-...+.+.+++
T Consensus 301 ~~~lVF~~t~~~a~~l~~~L~~~-~---~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~ 370 (434)
T 2db3_A 301 DGTIVFVETKRGADFLASFLSEK-E---FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIK 370 (434)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHT-T---CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCC
T ss_pred CCEEEEEeCcHHHHHHHHHHHhC-C---CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCC
Confidence 34999999999999888888763 3 3478899999877665432 2478999996 223356778888
Q ss_pred EEEEcccccccCccchHHHHHHHHc
Q 037446 229 CLVIDEAHRATGNYAYCTAIRELMS 253 (1165)
Q Consensus 229 lVVIDEAHrl~~~~~~~~~l~~L~~ 253 (1165)
+||.=.. ..+....++++.+
T Consensus 371 ~VI~~d~-----p~~~~~y~qriGR 390 (434)
T 2db3_A 371 HVINYDM-----PSKIDDYVHRIGR 390 (434)
T ss_dssp EEEESSC-----CSSHHHHHHHHTT
T ss_pred EEEEECC-----CCCHHHHHHHhcc
Confidence 8886221 1244455566654
No 257
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=39.42 E-value=2.8e+02 Score=32.86 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=33.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec--ChhHHHHHHHHHHHHhCC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP--SRPLVMQQIEACHNIVGI 179 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP--tr~La~Q~~~e~~kl~g~ 179 (1165)
.+++++.+|+|||.++...+..+.. .+.+++++.. .+..+.+|........+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~--~G~kVllVd~D~~r~aa~~qL~~~~~~~~i 157 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQR--KGWKTCLICADTFRAGAFDQLKQNATKARI 157 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSSHHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEeccccchhHHHHHHHHhhccCc
Confidence 4778899999999987777665533 2456777665 245555555444443444
No 258
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=38.89 E-value=63 Score=36.38 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=52.4
Q ss_pred CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCccCCCC
Q 037446 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTCLMKY 226 (1165)
Q Consensus 152 ~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~~l~~ 226 (1165)
..+++||.|+++.-+....+.+.+. + ..+..++|+....++..+. ...+|+|+|. .-...+.+.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~ 344 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREA-N---FTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQ 344 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHT-T---CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTT
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhC-C---CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCccc
Confidence 4568999999999999888888773 3 3477889998877665432 3478999995 2233567778
Q ss_pred ccEEEE
Q 037446 227 LVCLVI 232 (1165)
Q Consensus 227 ~~lVVI 232 (1165)
+++||.
T Consensus 345 v~~Vi~ 350 (410)
T 2j0s_A 345 VSLIIN 350 (410)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888886
No 259
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=38.76 E-value=17 Score=36.39 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=18.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+.+++.+++|+|||.++-..+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999987766544
No 260
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=38.73 E-value=50 Score=40.06 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=50.5
Q ss_pred CCeEEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHH--hcCCceEEEEcc
Q 037446 462 HSRVIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKF--RAGGYNVIVATS 530 (1165)
Q Consensus 462 ~~kvIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~F--r~g~~~VLVATd 530 (1165)
..++||.++++.-+......|...| +.+..++| +++..++..++..+ ..+..+||++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g--i~~~~l~~--------~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG--ISATMLNA--------SSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT--CCEEECCS--------SCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC--CcEEEEeC--------CCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 5699999999999999999999887 77776766 67888888888888 467889999996
No 261
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=38.59 E-value=14 Score=41.60 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=17.0
Q ss_pred CeEEEcCCCchHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil 145 (1165)
-++|.+|||+|||-++...+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478899999999988766553
No 262
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=38.39 E-value=15 Score=39.97 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=18.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil 145 (1165)
+.+++.+|+|+|||..+-..+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 5799999999999998765443
No 263
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=38.04 E-value=1.9e+02 Score=32.09 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=58.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEE-ecCh-hHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCC
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA-APSR-PLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKT 202 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLIL-vPtr-~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~ 202 (1165)
-+.+.+++|+|||-.....+..+ .. ..+++++. +++. .-+.++...+.+..|.+ .+......
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l-~~-~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~-----~v~q~~~~--------- 194 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWL-KN-HGFSVVIAASDTFRAGAIEQLEEHAKRIGVK-----VIKHSYGA--------- 194 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-HH-TTCCEEEEEECCSSTTHHHHHHHHHHHTTCE-----EECCCTTC---------
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-Hh-cCCEEEEEeecccccchHHHHHHHHHHcCce-----EEeccccC---------
Confidence 36778999999998766554433 32 34556555 3332 22333334444434432 11111110
Q ss_pred ccEEEEcHH-HHHHHHHcCccCCCCccEEEEcccccccCccchHHHHHHHHc-CCCCCeEEEEccCCCC
Q 037446 203 KRVFFVTPQ-VLEKDIQSGTCLMKYLVCLVIDEAHRATGNYAYCTAIRELMS-VPVQLRILALTATPGS 269 (1165)
Q Consensus 203 ~dIlVaTpq-~L~~~l~~~~~~l~~~~lVVIDEAHrl~~~~~~~~~l~~L~~-~~~~~riL~LSATP~~ 269 (1165)
.|. ++...+... .....+++++|.+-+......+...+..+.. +.....++.+.+|-..
T Consensus 195 ------~p~~~v~e~l~~~--~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~ 255 (328)
T 3e70_C 195 ------DPAAVAYDAIQHA--KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN 255 (328)
T ss_dssp ------CHHHHHHHHHHHH--HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT
T ss_pred ------CHHHHHHHHHHHH--HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH
Confidence 011 111111110 0124678899998776533344444444332 2344567788887654
No 264
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=37.73 E-value=11 Score=40.33 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=18.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+.+++.+++|+|||..+-..+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999987665543
No 265
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=37.57 E-value=65 Score=32.91 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=52.0
Q ss_pred cCCCChHHHH-HHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC--CccceeeecccccccCCCCCHHHHHH
Q 037446 437 HGAQSPKLSK-MLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD--LVKATEFIGQSSGKASKGQSQKVQQA 513 (1165)
Q Consensus 437 ~~~~s~Kl~~-LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~--~i~~~~l~G~~~g~~~ggms~~eR~~ 513 (1165)
....++|-.. ++-++.. +. ....+.++||.++++.-+..+.+.+...+. .+.+..++| +.+..++..
T Consensus 58 ~pTGsGKT~~~~~~~l~~-l~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~ 127 (224)
T 1qde_A 58 AQSGTGKTGTFSIAALQR-ID-TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIG--------GTSFVEDAE 127 (224)
T ss_dssp CCTTSSHHHHHHHHHHHH-CC-TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-----------------
T ss_pred CCCCCcHHHHHHHHHHHH-Hh-ccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeC--------CcchHHHHh
Confidence 4456777766 3444433 22 233467999999999999999998877632 144444554 333322222
Q ss_pred HHHHHhcCCceEEEEccc------ccccccccCCCEEEE
Q 037446 514 VLEKFRAGGYNVIVATSI------GEEGLDIMEVDLVIC 546 (1165)
Q Consensus 514 il~~Fr~g~~~VLVATda------~~eGLDIp~vd~VI~ 546 (1165)
. +. ..+|+|+|.- ....+++..+++||.
T Consensus 128 ~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 128 G---LR--DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp ----CT--TCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred c---CC--CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 1 22 2678998842 122345555666664
No 266
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=37.12 E-value=16 Score=41.30 Aligned_cols=23 Identities=48% Similarity=0.605 Sum_probs=18.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.++++.+++|+|||.++-..+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999887665443
No 267
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=37.05 E-value=36 Score=39.45 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=26.2
Q ss_pred HHHHHHHhhc---CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 114 QFAITKTALF---SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 114 Q~eal~~ll~---rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
+..++..+.. .-++|.+|||+|||-..-..+ ..+. ...++++++=
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~all-g~l~-~~~g~I~~~e 202 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGL-QELN-SSERNILTVE 202 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHH-HHHC-CTTSCEEEEE
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH-hhcC-CCCCEEEEec
Confidence 4445555443 236789999999997644433 3332 2245566553
No 268
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=36.93 E-value=1.7e+02 Score=34.57 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=23.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEE-ecC
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA-APS 162 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLIL-vPt 162 (1165)
+.+.+++|+|||......+..+ .. .+++++|. ..+
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll-~~-~~G~V~l~g~D~ 331 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQF-EQ-QGKSVMLAAGDT 331 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-HH-TTCCEEEECCCT
T ss_pred EEEECCCcccHHHHHHHHHHHh-hh-cCCeEEEecCcc
Confidence 5678999999998766554332 22 35677776 443
No 269
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=36.80 E-value=21 Score=40.25 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=18.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil 145 (1165)
+.+++.+++|+|||..+-..+.
T Consensus 118 ~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999998766543
No 270
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=36.72 E-value=19 Score=38.61 Aligned_cols=21 Identities=33% Similarity=0.297 Sum_probs=16.8
Q ss_pred eEEEcCCCchHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~ 146 (1165)
++|.++||+|||..+...+..
T Consensus 4 i~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhc
Confidence 678999999999887665543
No 271
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=36.46 E-value=17 Score=42.63 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=19.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+++|+.+|+|+|||..+-..+..
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 57999999999999987665544
No 272
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=35.97 E-value=52 Score=35.39 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=31.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhC---------CCCeEEEEecChhHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWF---------PDGKIVFAAPSRPLVMQQIEACHN 175 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~---------~~~rvLILvPtr~La~Q~~~e~~k 175 (1165)
.-++|.++.|+|||..+...+... ..+ ..++++++.-... ..+....+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~-~~g~~~~g~~~~~~~~v~~~~~e~~-~~~~~~r~~~ 89 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI-AGGPDLLEVGELPTGPVIYLPAEDP-PTAIHHRLHA 89 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH-HTCCCTTCCCCCCCCCEEEEESSSC-HHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH-hcCCCcCCCccCCCccEEEEECCCC-HHHHHHHHHH
Confidence 447889999999999877666533 322 1356777765533 3444444443
No 273
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=35.47 E-value=19 Score=40.17 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=16.6
Q ss_pred eEEEcCCCchHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~ 146 (1165)
++|++|||+|||-.+...+..
T Consensus 13 i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHh
Confidence 678999999999887665543
No 274
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=35.01 E-value=18 Score=40.52 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=15.9
Q ss_pred eEEEcCCCchHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil 145 (1165)
++|.+|||+|||-.+...+.
T Consensus 6 i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHH
Confidence 57889999999987666543
No 275
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=34.95 E-value=32 Score=46.89 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=55.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhcCCccE
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFWKTKRV 205 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~~~~dI 205 (1165)
+.+.+|.|+|||..++..+.+... .+++++||.+-.+|-... +++ +|..-. ++
T Consensus 1434 iei~g~~~sGkttl~~~~~a~~~~--~g~~~~~i~~e~~~~~~~---~~~-~Gv~~~---------------------~l 1486 (1706)
T 3cmw_A 1434 VEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY---ARK-LGVDID---------------------NL 1486 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECTTSCCCHHH---HHH-TTCCGG---------------------GC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEEecCCCCCHHH---HHH-cCCCHH---------------------He
Confidence 778899999999998887766543 467899999987777665 333 454311 24
Q ss_pred EEEcHHHHHHHHH--cCccCCCCccEEEEcccccccC
Q 037446 206 FFVTPQVLEKDIQ--SGTCLMKYLVCLVIDEAHRATG 240 (1165)
Q Consensus 206 lVaTpq~L~~~l~--~~~~~l~~~~lVVIDEAHrl~~ 240 (1165)
+++-|+.-...+. ...+.-..+++||||..--+..
T Consensus 1487 ~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1487 LCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred EEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 4555533222111 0111223478999999887754
No 276
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=34.74 E-value=33 Score=38.06 Aligned_cols=59 Identities=17% Similarity=0.007 Sum_probs=36.1
Q ss_pred HHHHhhc------CCeEEEcCCCchHHHHHHHHHHHHHHh----CCCCeEEEEecChhH-HHHHHHHHHH
Q 037446 117 ITKTALF------SNTLVALPTGLGKTLIAAVVIYNFFRW----FPDGKIVFAAPSRPL-VMQQIEACHN 175 (1165)
Q Consensus 117 al~~ll~------rnvIl~a~TGsGKTL~a~lpil~~L~~----~~~~rvLILvPtr~L-a~Q~~~e~~k 175 (1165)
.+..+++ .-++|.+++|+|||..+...+.+.... ..+++++|+.-...+ ..+..+.+.+
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4555653 347889999999999877766653221 114678888766433 3444433433
No 277
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=34.65 E-value=35 Score=38.30 Aligned_cols=48 Identities=21% Similarity=0.054 Sum_probs=31.9
Q ss_pred HHHHhhc------CCeEEEcCCCchHHHHHHHHHHHHHHhC----CCCeEEEEecChh
Q 037446 117 ITKTALF------SNTLVALPTGLGKTLIAAVVIYNFFRWF----PDGKIVFAAPSRP 164 (1165)
Q Consensus 117 al~~ll~------rnvIl~a~TGsGKTL~a~lpil~~L~~~----~~~rvLILvPtr~ 164 (1165)
.+..+++ .-++|.+++|+|||..+...+....... .+++++|+.-...
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4555653 2378899999999998777666532211 3567888876643
No 278
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=34.61 E-value=66 Score=41.91 Aligned_cols=95 Identities=11% Similarity=0.111 Sum_probs=62.4
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCC--c----cceeeecccccccCCCCCHHHH
Q 037446 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--V----KATEFIGQSSGKASKGQSQKVQ 511 (1165)
Q Consensus 438 ~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~--i----~~~~l~G~~~g~~~ggms~~eR 511 (1165)
...++|-...+-.+..... .+.++||.++++.-+..+++.++..+.. + .+..+ +|+.+..++
T Consensus 79 pTGSGKTl~~lp~l~~~~~----~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~--------~Gg~~~~~~ 146 (1054)
T 1gku_B 79 PTGVGKTSFGLAMSLFLAL----KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYY--------HGRIPKREK 146 (1054)
T ss_dssp CBTSCSHHHHHHHHHHHHT----TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEEC--------CSSCCSHHH
T ss_pred CCCCCHHHHHHHHHHHHhh----cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEE--------eCCCChhhH
Confidence 3456776544444444333 4679999999999999999998876421 2 33334 447777777
Q ss_pred HHHHHHHhcCCceEEEEccc-ccccc-cccCCCEEEE
Q 037446 512 QAVLEKFRAGGYNVIVATSI-GEEGL-DIMEVDLVIC 546 (1165)
Q Consensus 512 ~~il~~Fr~g~~~VLVATda-~~eGL-DIp~vd~VI~ 546 (1165)
....+.+++ .+|+|+|.- +..-+ .+..+++||.
T Consensus 147 ~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 147 ENFMQNLRN--FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp HHHHHSGGG--CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred HHHHhhccC--CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 777777776 899999951 11111 1557778875
No 279
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=34.26 E-value=27 Score=37.04 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=21.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHh
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRW 150 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~ 150 (1165)
++++.++.|+|||..++-.+..+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 58889999999999988877776554
No 280
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=33.90 E-value=54 Score=33.56 Aligned_cols=97 Identities=18% Similarity=0.281 Sum_probs=53.5
Q ss_pred cCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC------CccceeeecccccccCCCCCHHH
Q 037446 437 HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD------LVKATEFIGQSSGKASKGQSQKV 510 (1165)
Q Consensus 437 ~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~------~i~~~~l~G~~~g~~~ggms~~e 510 (1165)
....++|-...+-.+...+. ....+.++||.++++.-+..+.+.+..... .+.+..++| +.+..+
T Consensus 48 a~TGsGKT~~~~~~~l~~l~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~ 118 (219)
T 1q0u_A 48 SQTGTGKTHAYLLPIMEKIK-PERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIG--------GTDKQK 118 (219)
T ss_dssp CCSSHHHHHHHHHHHHHHCC-TTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECC--------CSHHHH
T ss_pred CCCCChHHHHHHHHHHHHHH-hCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeC--------CCCHHH
Confidence 34556776653333333332 233467999999999999999888876531 134444444 333222
Q ss_pred HHHHHHHHhcCCceEEEEcc-----cccc-cccccCCCEEEE
Q 037446 511 QQAVLEKFRAGGYNVIVATS-----IGEE-GLDIMEVDLVIC 546 (1165)
Q Consensus 511 R~~il~~Fr~g~~~VLVATd-----a~~e-GLDIp~vd~VI~ 546 (1165)
+. +.+ .+...|+|+|. .+.. .+++..+++||.
T Consensus 119 ~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 119 AL---EKL-NVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp TT---CCC-SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred HH---HHc-CCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 11 111 23567899984 2222 245556666654
No 281
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=33.87 E-value=19 Score=37.84 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=16.6
Q ss_pred CeEEEcCCCchHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil 145 (1165)
.+|+.+|.|+|||..+...+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488899999999987655443
No 282
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=33.46 E-value=1.3e+02 Score=30.75 Aligned_cols=74 Identities=14% Similarity=0.263 Sum_probs=44.8
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHhcC-CCccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcc------ccc
Q 037446 461 KHSRVIIFSNFRGSVRDIMNALATIG-DLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATS------IGE 533 (1165)
Q Consensus 461 ~~~kvIVF~~sr~~ae~L~~~L~~~g-~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATd------a~~ 533 (1165)
.+.++||.++++.-+..+.+.+.... ..+.+..++| +.+...+. ..+.. ..+|+|+|. ...
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~---~~~~~-~~~iiv~Tp~~l~~~~~~ 160 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYG--------GRNRNGQI---EDISK-GVDIIIATPGRLNDLQMN 160 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC--------------CH---HHHHS-CCSEEEECHHHHHHHHHT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEEC--------CCChHHHH---HHhcC-CCCEEEECHHHHHHHHHc
Confidence 56789999999999999999998763 1245555554 33333222 22333 478999994 122
Q ss_pred ccccccCCCEEEE
Q 037446 534 EGLDIMEVDLVIC 546 (1165)
Q Consensus 534 eGLDIp~vd~VI~ 546 (1165)
..+++..+++||.
T Consensus 161 ~~~~~~~~~~lVi 173 (228)
T 3iuy_A 161 NSVNLRSITYLVI 173 (228)
T ss_dssp TCCCCTTCCEEEE
T ss_pred CCcCcccceEEEE
Confidence 3455666776664
No 283
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=33.45 E-value=47 Score=34.09 Aligned_cols=56 Identities=13% Similarity=-0.016 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHhhc---CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChh
Q 037446 108 VPVRDYQFAITKTALF---SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRP 164 (1165)
Q Consensus 108 IQlr~yQ~eal~~ll~---rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~ 164 (1165)
+....-|..++..+.. +=.+|.+.-|++||-..+.-++.. ....+.++.+|+|+..
T Consensus 33 ~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~-a~~~Gr~V~vLAp~~~ 91 (189)
T 2l8b_A 33 VPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMM-AREQGREVQIIAADRR 91 (189)
T ss_dssp CCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHH-HHHTTCCEEEECSTTH
T ss_pred cccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHH-HHhcCeEEEEEcCchH
Confidence 3333456677776665 346778999999998843333332 2335678999999943
No 284
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=33.39 E-value=1.8e+02 Score=30.22 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=44.7
Q ss_pred CCeEEEEeCchHHHHHHHHHHHhcCC--CccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEccc-----c-c
Q 037446 462 HSRVIIFSNFRGSVRDIMNALATIGD--LVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATSI-----G-E 533 (1165)
Q Consensus 462 ~~kvIVF~~sr~~ae~L~~~L~~~g~--~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATda-----~-~ 533 (1165)
+.++||.|+++.-+..+.+.++..+. .+.+..++| +.+...+.. .+ ....+|+|+|.- + .
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~---~~-~~~~~Ivv~Tp~~l~~~l~~ 167 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYG--------GADTHSQIR---EV-QMGCHLLVATPGRLVDFIEK 167 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECS--------SSCSHHHHH---HH-SSCCSEEEECHHHHHHHHHT
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEEC--------CCCHHHHHH---Hh-CCCCCEEEECHHHHHHHHHc
Confidence 46999999999999999988877532 134444444 444333222 22 245789999942 1 1
Q ss_pred ccccccCCCEEEE
Q 037446 534 EGLDIMEVDLVIC 546 (1165)
Q Consensus 534 eGLDIp~vd~VI~ 546 (1165)
..+++..+++||.
T Consensus 168 ~~~~~~~~~~lVi 180 (253)
T 1wrb_A 168 NKISLEFCKYIVL 180 (253)
T ss_dssp TSBCCTTCCEEEE
T ss_pred CCCChhhCCEEEE
Confidence 2245666666664
No 285
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=33.37 E-value=30 Score=39.23 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=23.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
..++|.+|||+|||-..-.. ...+....++.++.+-..
T Consensus 124 g~i~I~GptGSGKTTlL~~l-~g~~~~~~~~~i~t~ed~ 161 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAM-LDYLNNTKYHHILTIEDP 161 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHH-HHHHHHHCCCEEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHH-HhcccCCCCcEEEEccCc
Confidence 35788999999999765443 333333234555554433
No 286
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=33.08 E-value=83 Score=35.51 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=22.5
Q ss_pred EEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 128 VALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 128 l~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
..+.-|.|||.+++..+..+... +.++|+|=
T Consensus 149 ~s~KGGvGKTT~a~nLA~~La~~--g~rVlliD 179 (373)
T 3fkq_A 149 TSPCGGVGTSTVAAACAIAHANM--GKKVFYLN 179 (373)
T ss_dssp ECSSTTSSHHHHHHHHHHHHHHH--TCCEEEEE
T ss_pred ECCCCCChHHHHHHHHHHHHHhC--CCCEEEEE
Confidence 34689999999988877766443 45777764
No 287
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=32.99 E-value=37 Score=37.43 Aligned_cols=59 Identities=20% Similarity=0.058 Sum_probs=36.1
Q ss_pred HHHHhhc------CCeEEEcCCCchHHHHHHHHHHHHHHh----------CCC----CeEEEEecChhH-HHHHHHHHHH
Q 037446 117 ITKTALF------SNTLVALPTGLGKTLIAAVVIYNFFRW----------FPD----GKIVFAAPSRPL-VMQQIEACHN 175 (1165)
Q Consensus 117 al~~ll~------rnvIl~a~TGsGKTL~a~lpil~~L~~----------~~~----~rvLILvPtr~L-a~Q~~~e~~k 175 (1165)
.+..+++ .-++|.+++|+|||..+.-.+.+.... ..+ ++++|+.-...+ ..+..+.+.+
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~ 165 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH 165 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4555553 347889999999999877766653211 112 578888766433 4444444444
No 288
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=32.98 E-value=27 Score=34.67 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=18.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
..+++.+++|+|||.++-.....
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999987765543
No 289
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=32.68 E-value=23 Score=38.48 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=18.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.+++.+++|+|||.++-......
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 58999999999999876655443
No 290
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=31.88 E-value=1.6e+02 Score=32.60 Aligned_cols=95 Identities=14% Similarity=0.151 Sum_probs=55.7
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC--CccceeeecccccccCCCCCHHHHHHHH
Q 037446 438 GAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD--LVKATEFIGQSSGKASKGQSQKVQQAVL 515 (1165)
Q Consensus 438 ~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~--~i~~~~l~G~~~g~~~ggms~~eR~~il 515 (1165)
...++|-....-.+...+. ....+.++||.|+++.-+..+.+.+..... .+++..++| +.+..++...+
T Consensus 66 ~TGsGKT~~~~~~~~~~l~-~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~ 136 (394)
T 1fuu_A 66 QSGTGKTGTFSIAALQRID-TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIG--------GTSFVEDAEGL 136 (394)
T ss_dssp CSSHHHHHHHHHHHHHHCC-TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECS--------SCCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhh-ccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeC--------CCchHHHHhhc
Confidence 4556777553333333332 233467999999999999999888877532 144444444 55655544433
Q ss_pred HHHhcCCceEEEEccc-----c-cccccccCCCEEEE
Q 037446 516 EKFRAGGYNVIVATSI-----G-EEGLDIMEVDLVIC 546 (1165)
Q Consensus 516 ~~Fr~g~~~VLVATda-----~-~eGLDIp~vd~VI~ 546 (1165)
. ...|+|+|.- + ...+++..+++||.
T Consensus 137 ~-----~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 137 R-----DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp H-----HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred C-----CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 3 3578888831 1 12344555666664
No 291
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=31.58 E-value=93 Score=36.36 Aligned_cols=94 Identities=12% Similarity=0.044 Sum_probs=53.3
Q ss_pred CchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEe--------CCCChHHHHh----hc
Q 037446 133 GLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMT--------GQISPTKRAS----FW 200 (1165)
Q Consensus 133 GsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~--------G~~~~~~~~~----l~ 200 (1165)
.++|.....-.+...+...+..++||.|+++.-+....+.+..........+..++ |+.+..+|.. +.
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 35676555444445555566789999999999999999888875322223333444 3555444432 22
Q ss_pred C--CccEEEEcHHHHHHHHHcCccCCCCccEEEE
Q 037446 201 K--TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVI 232 (1165)
Q Consensus 201 ~--~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVI 232 (1165)
. ..+|+|+|- .+ ...+.+..+++||.
T Consensus 449 ~~g~~~vLvaT~-~~-----~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 449 ASGDNNILIATS-VA-----DEGIDIAECNLVIL 476 (555)
T ss_dssp ---CCSEEEECC-CT-----TCCEETTSCSEEEE
T ss_pred cCCCeeEEEEcc-hh-----hcCCccccCCEEEE
Confidence 2 368999994 22 23456778888876
No 292
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=31.30 E-value=28 Score=33.95 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=17.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.+++.++.|+|||.++-.....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999887665433
No 293
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=31.21 E-value=11 Score=33.25 Aligned_cols=10 Identities=40% Similarity=0.962 Sum_probs=9.5
Q ss_pred cHHHHHHHHH
Q 037446 1137 DMMAIYRFLL 1146 (1165)
Q Consensus 1137 ~~~~~~~~~~ 1146 (1165)
|||.||.|++
T Consensus 4 ~~MSFY~flm 13 (80)
T 2kvs_A 4 DPMTFYNFIM 13 (80)
T ss_dssp CCCHHHHHHT
T ss_pred ccccHHHHHH
Confidence 9999999987
No 294
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=31.02 E-value=25 Score=35.73 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=19.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+.+++.+++|+|||.++-..+..+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 568899999999999877665443
No 295
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=31.02 E-value=98 Score=34.68 Aligned_cols=98 Identities=15% Similarity=0.263 Sum_probs=59.3
Q ss_pred cCCCChHHHHHHHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCCC--ccceeeecccccccCCCCCHHHHHHH
Q 037446 437 HGAQSPKLSKMLEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAV 514 (1165)
Q Consensus 437 ~~~~s~Kl~~LlelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~~--i~~~~l~G~~~g~~~ggms~~eR~~i 514 (1165)
....++|-....-.+.+.+. ....+.++||.++++.-+..+.+.+...+.. ..+..+. ++.... ..
T Consensus 84 a~TGsGKT~~~~~~~~~~~~-~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~--------~~~~~~---~~ 151 (414)
T 3eiq_A 84 AQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACI--------GGTNVR---AE 151 (414)
T ss_dssp CCSCSSSHHHHHHHHHHHCC-TTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECC--------CCTTHH---HH
T ss_pred CCCCCcccHHHHHHHHHHHh-hcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEE--------CCcchH---HH
Confidence 34567787665444444443 2335678999999999999999998876421 2222222 233333 23
Q ss_pred HHHHhcCCceEEEEcc-----cccc-cccccCCCEEEE
Q 037446 515 LEKFRAGGYNVIVATS-----IGEE-GLDIMEVDLVIC 546 (1165)
Q Consensus 515 l~~Fr~g~~~VLVATd-----a~~e-GLDIp~vd~VI~ 546 (1165)
.+.+..+...|+|+|. .+.. .+++..+++||.
T Consensus 152 ~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 152 VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred HHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 4556667789999994 2222 244555666654
No 296
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=30.99 E-value=23 Score=40.04 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=17.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
-++|+++||+|||-.+...+..
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 4678999999999887665543
No 297
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=30.94 E-value=25 Score=39.43 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=17.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.++|+++||+|||-.+...+..
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999887666543
No 298
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=30.76 E-value=23 Score=34.40 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.2
Q ss_pred eEEEcCCCchHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVV 143 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lp 143 (1165)
+++.+++|+|||.++-..
T Consensus 4 I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 678999999999876655
No 299
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=30.59 E-value=25 Score=40.61 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=17.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~ 147 (1165)
++|++|||+|||-.+...+..+
T Consensus 5 i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEECcchhhHHHHHHHHHHHC
Confidence 5788999999998776655443
No 300
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=30.51 E-value=26 Score=41.73 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=18.1
Q ss_pred cCCeEEEcCCCchHHHHHHHHH
Q 037446 123 FSNTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 123 ~rnvIl~a~TGsGKTL~a~lpi 144 (1165)
+.++++.+++|+|||..+-...
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa 62 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLK 62 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGG
T ss_pred CCeeEeecCchHHHHHHHHHHH
Confidence 3789999999999998765543
No 301
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=30.31 E-value=1.8e+02 Score=30.81 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=47.5
Q ss_pred CCCeEEEEeCchHHHHHHHHHHHhcCCC--ccceeeecccccccCCCCCHHHHHHHHHHHhcCCceEEEEcc-----cc-
Q 037446 461 KHSRVIIFSNFRGSVRDIMNALATIGDL--VKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYNVIVATS-----IG- 532 (1165)
Q Consensus 461 ~~~kvIVF~~sr~~ae~L~~~L~~~g~~--i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~VLVATd-----a~- 532 (1165)
.+.++||.++++.-+..+.+.++..+.. ..+..+.| +.....+. ..+..+ .+|+|+|. .+
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~---~~~~~~-~~Iiv~Tp~~l~~~~~ 192 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMG--------GSNRSAEA---QKLGNG-INIIVATPGRLLDHMQ 192 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECS--------SSCHHHHH---HHHHHC-CSEEEECHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEEC--------CCCHHHHH---HHhcCC-CCEEEEcHHHHHHHHH
Confidence 4678999999999999999999876421 33334443 44444333 233344 78999993 12
Q ss_pred -cccccccCCCEEEE
Q 037446 533 -EEGLDIMEVDLVIC 546 (1165)
Q Consensus 533 -~eGLDIp~vd~VI~ 546 (1165)
..++++..+++||.
T Consensus 193 ~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 193 NTPGFMYKNLQCLVI 207 (262)
T ss_dssp HCTTCCCTTCCEEEE
T ss_pred ccCCcccccCCEEEE
Confidence 12466777777764
No 302
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=30.23 E-value=2.6e+02 Score=34.24 Aligned_cols=93 Identities=10% Similarity=0.062 Sum_probs=65.8
Q ss_pred CCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCccCCCC
Q 037446 152 PDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGTCLMKY 226 (1165)
Q Consensus 152 ~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~~~l~~ 226 (1165)
.+.++||.|+|+.-+....+.+... |. .+..++|+....++..+. ...+|+|+|- +....+.+.+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~-gi---~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI-GI---KVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-TC---CEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc-CC---CeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccCC
Confidence 4569999999999998888888774 43 467788888876664332 3578999985 1134567778
Q ss_pred ccEEEEcccccccCccchHHHHHHHHcC
Q 037446 227 LVCLVIDEAHRATGNYAYCTAIRELMSV 254 (1165)
Q Consensus 227 ~~lVVIDEAHrl~~~~~~~~~l~~L~~~ 254 (1165)
+++||+=+++...-..+....++.+.+.
T Consensus 514 v~lVi~~d~d~~G~p~s~~~~iQr~GRa 541 (661)
T 2d7d_A 514 VSLVAILDADKEGFLRSERSLIQTIGRA 541 (661)
T ss_dssp EEEEEETTTTCCTTTTSHHHHHHHHHTT
T ss_pred CCEEEEeCcccccCCCCHHHHHHHhCcc
Confidence 9999999988764323455566666653
No 303
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=30.19 E-value=1.4e+02 Score=27.43 Aligned_cols=50 Identities=22% Similarity=0.422 Sum_probs=41.7
Q ss_pred EEEEeCchHHHHHHHHHHHhcCCCccceeeecccccccCCCCCHHHHHHHHHHHhcCCce
Q 037446 465 VIIFSNFRGSVRDIMNALATIGDLVKATEFIGQSSGKASKGQSQKVQQAVLEKFRAGGYN 524 (1165)
Q Consensus 465 vIVF~~sr~~ae~L~~~L~~~g~~i~~~~l~G~~~g~~~ggms~~eR~~il~~Fr~g~~~ 524 (1165)
.+||++.-+....+...++..| ++++.+.+ ....+.|.+-++.|......
T Consensus 5 fvvfssdpeilkeivreikrqg--vrvvllys--------dqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG--VRVVLLYS--------DQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT--CEEEEEEC--------CSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhCC--eEEEEEec--------CchHHHHHHHHHHHHHcCCc
Confidence 5789999999999999999999 88888876 56888899999999865433
No 304
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=29.79 E-value=2.2e+02 Score=31.21 Aligned_cols=41 Identities=10% Similarity=0.034 Sum_probs=23.9
Q ss_pred CCCccEEEEccccc-ccCccchHHHHHHHHcCCCCCeEEEEccC
Q 037446 224 MKYLVCLVIDEAHR-ATGNYAYCTAIRELMSVPVQLRILALTAT 266 (1165)
Q Consensus 224 l~~~~lVVIDEAHr-l~~~~~~~~~l~~L~~~~~~~riL~LSAT 266 (1165)
+...++|||||+|. +.. .....+.+.+.-+++.-++.+.+|
T Consensus 74 f~~~kvvii~~~~~kl~~--~~~~aLl~~le~p~~~~~~il~~~ 115 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNA--AINEQLLTLTGLLHDDLLLIVRGN 115 (343)
T ss_dssp CCSCEEEEEECCSSCCCT--THHHHHHHHHTTCBTTEEEEEEES
T ss_pred ccCCeEEEEECCCCCCCh--HHHHHHHHHHhcCCCCeEEEEEcC
Confidence 35578999999999 765 333444445544433334444444
No 305
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=29.32 E-value=54 Score=33.93 Aligned_cols=36 Identities=17% Similarity=-0.009 Sum_probs=28.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP 161 (1165)
..+++....|.|||-+++-.++..+. .+.+|+|+-=
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g--~G~rV~~vQF 64 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG--HGKNVGVVQF 64 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH--TTCCEEEEES
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEe
Confidence 57999999999999998888777654 3567888843
No 306
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=29.31 E-value=24 Score=37.41 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=16.9
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpi 144 (1165)
+++++.+++|+|||..+-..+
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 458999999999998765544
No 307
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=29.25 E-value=38 Score=38.55 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=22.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
..++|.++||+|||-..-..+- ++.....++++++-
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~-~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID-YINQTKSYHIITIE 172 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH-HHHHHSCCEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHh-hcCcCCCcEEEEec
Confidence 4578899999999987555443 33322246665554
No 308
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=29.10 E-value=20 Score=39.77 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=18.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil 145 (1165)
.++++.+++|+|||..+-....
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 6799999999999987665443
No 309
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=29.10 E-value=71 Score=37.51 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=44.6
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEE--------EEeCCCChHHHHh----h
Q 037446 132 TGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTI--------DMTGQISPTKRAS----F 199 (1165)
Q Consensus 132 TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~--------~l~G~~~~~~~~~----l 199 (1165)
..++|-....-.+...+...++.++||.|+++..+....+.+.+..+....... .++|+.+..+|.. +
T Consensus 369 ~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 448 (556)
T 4a2p_A 369 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 448 (556)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-------------------------
T ss_pred CCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHh
Confidence 357776654444444444466789999999999988888888664211122222 3344555544432 2
Q ss_pred cC--CccEEEEcHHHHHHHHHcCccCCCCccEEEE
Q 037446 200 WK--TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVI 232 (1165)
Q Consensus 200 ~~--~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVI 232 (1165)
.. ..+|+|+|- .+.. .+.+..+++||.
T Consensus 449 ~~~g~~~vLvaT~-~~~~-----GiDip~v~~VI~ 477 (556)
T 4a2p_A 449 KTSKDNRLLIATS-VADE-----GIDIVQCNLVVL 477 (556)
T ss_dssp -----CCEEEEEC-----------------CEEEE
T ss_pred cccCceEEEEEcC-chhc-----CCCchhCCEEEE
Confidence 22 368999993 3322 346677888886
No 310
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=29.01 E-value=27 Score=34.45 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=16.6
Q ss_pred CeEEEcCCCchHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil 145 (1165)
-+++.+++|+|||.++-....
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999988665443
No 311
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=28.61 E-value=30 Score=35.74 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=22.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhC--CCC-eEEEEecC
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWF--PDG-KIVFAAPS 162 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~--~~~-rvLILvPt 162 (1165)
.++.++.|+|||+.+...+......+ ..+ +.|+++.-
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~ 47 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNI 47 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecC
Confidence 67899999999998655444432111 233 56655543
No 312
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=28.39 E-value=25 Score=36.65 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=16.0
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpi 144 (1165)
+.+++.++||+|||-.++-.+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 457899999999987654443
No 313
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=28.37 E-value=31 Score=33.79 Aligned_cols=24 Identities=17% Similarity=0.139 Sum_probs=19.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
++++|.+..|||||.++-.....+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999877765443
No 314
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=28.03 E-value=80 Score=34.45 Aligned_cols=92 Identities=10% Similarity=0.096 Sum_probs=54.7
Q ss_pred CCCChHHHHH-HHHHHHhhcccCCCCCeEEEEeCchHHHHHHHHHHHhcCC---CccceeeecccccccCCCCCHHHHHH
Q 037446 438 GAQSPKLSKM-LEVLVDHFKTKDPKHSRVIIFSNFRGSVRDIMNALATIGD---LVKATEFIGQSSGKASKGQSQKVQQA 513 (1165)
Q Consensus 438 ~~~s~Kl~~L-lelL~~~~~~~~~~~~kvIVF~~sr~~ae~L~~~L~~~g~---~i~~~~l~G~~~g~~~ggms~~eR~~ 513 (1165)
...++|-.+. +-++... . ....+.++||.++++.-|..++..+...+. .+.+..+.|.. .....
T Consensus 139 ~TGsGKT~a~~lp~l~~l-~-~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~---- 206 (300)
T 3fmo_B 139 QSGTGKTAAFVLAMLSQV-E-PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN------KLERG---- 206 (300)
T ss_dssp CTTSSHHHHHHHHHHHHC-C-TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTC------CCCTT----
T ss_pred CCCCCccHHHHHHHHHhh-h-ccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCc------cHhhh----
Confidence 4567776553 3444333 2 233455899999999999999888887642 13344444321 11110
Q ss_pred HHHHHhcCCceEEEEccc-----c-c-ccccccCCCEEEE
Q 037446 514 VLEKFRAGGYNVIVATSI-----G-E-EGLDIMEVDLVIC 546 (1165)
Q Consensus 514 il~~Fr~g~~~VLVATda-----~-~-eGLDIp~vd~VI~ 546 (1165)
.....+|||+|.- + . ..+++..+.+||.
T Consensus 207 -----~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 207 -----QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp -----CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred -----hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 1345679999952 1 1 3467777888775
No 315
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=27.85 E-value=36 Score=39.93 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=19.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.++|+.+++|+|||.++-..+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999876655443
No 316
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=26.97 E-value=36 Score=33.80 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=17.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.+++.+++|+|||.++-.....
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999987665543
No 317
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=26.81 E-value=40 Score=33.30 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=18.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
..+++.+++|+|||.++-..+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36889999999999987766544
No 318
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=26.61 E-value=41 Score=40.08 Aligned_cols=18 Identities=28% Similarity=0.185 Sum_probs=15.3
Q ss_pred CCeEEEcCCCchHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAA 141 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~ 141 (1165)
.+++|.++||||||-..-
T Consensus 261 ~~i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLN 278 (511)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 679999999999997643
No 319
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=26.60 E-value=19 Score=40.40 Aligned_cols=32 Identities=22% Similarity=0.124 Sum_probs=22.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP 161 (1165)
-+++.+++|+|||..+...+.+ .+.+++|+.-
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~ 156 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATV 156 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEe
Confidence 4688999999999887766554 2334555544
No 320
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=26.59 E-value=32 Score=33.80 Aligned_cols=19 Identities=32% Similarity=0.211 Sum_probs=15.5
Q ss_pred eEEEcCCCchHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpi 144 (1165)
+++.++.|+|||.++-...
T Consensus 5 I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHH
Confidence 6789999999998765544
No 321
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=26.38 E-value=32 Score=40.27 Aligned_cols=23 Identities=43% Similarity=0.456 Sum_probs=18.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+++++.+|+|+|||..+-..+..
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999986655443
No 322
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=26.19 E-value=32 Score=34.38 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=15.9
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpi 144 (1165)
+-+++.+|+|+|||-..-..+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~ 26 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLI 26 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 347788999999998655433
No 323
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=26.03 E-value=1.1e+02 Score=33.10 Aligned_cols=73 Identities=12% Similarity=0.093 Sum_probs=49.2
Q ss_pred HHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc-----CCccEEEEcHHHHHHHHHcCc
Q 037446 147 FFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW-----KTKRVFFVTPQVLEKDIQSGT 221 (1165)
Q Consensus 147 ~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~-----~~~dIlVaTpq~L~~~l~~~~ 221 (1165)
.+.....+++||.++++.-+....+.+. .+..++|+.+...+.... ...+|+|+|. .+ . ..
T Consensus 214 ~~~~~~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~----~-~G 279 (337)
T 2z0m_A 214 ALRENKDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-VA----S-RG 279 (337)
T ss_dssp HHHTCCCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-HH----H-TT
T ss_pred HHHhCCCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-cc----c-cC
Confidence 3445567789999999877766554433 367788998876654332 2468999994 22 2 24
Q ss_pred cCCCCccEEEEc
Q 037446 222 CLMKYLVCLVID 233 (1165)
Q Consensus 222 ~~l~~~~lVVID 233 (1165)
+.+..+++||.-
T Consensus 280 id~~~~~~Vi~~ 291 (337)
T 2z0m_A 280 LDIPLVEKVINF 291 (337)
T ss_dssp CCCCCBSEEEES
T ss_pred CCccCCCEEEEe
Confidence 577788888863
No 324
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=25.83 E-value=32 Score=35.33 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=15.4
Q ss_pred CeEEEcCCCchHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpi 144 (1165)
-+++.+|+|+|||-++-..+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 36788999999998755443
No 325
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=25.62 E-value=35 Score=34.19 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=17.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil 145 (1165)
..+++.+++|+|||.++-....
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999988765543
No 326
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=25.60 E-value=38 Score=33.73 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=17.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
-+++.+++|+|||.++-.....
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999987665543
No 327
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=25.58 E-value=59 Score=36.18 Aligned_cols=33 Identities=24% Similarity=0.154 Sum_probs=23.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
+++.++.|+|||.++...+..+. . .+++++++.
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~-~-~g~kVllid 140 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYA-E-LGYKVLIAA 140 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHH-H-TTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-H-CCCeEEEEe
Confidence 66779999999988776665443 2 356676663
No 328
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=25.57 E-value=38 Score=33.63 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=17.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+++.++.|+|||.++-.....+
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999998877655443
No 329
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=25.15 E-value=41 Score=37.43 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=18.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
..+++.+|+|+|||..+-+.+-.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999876665443
No 330
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=25.11 E-value=40 Score=34.46 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=17.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.++|.++.|+|||.++-..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999987766544
No 331
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=25.00 E-value=94 Score=44.50 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=19.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+.+++.+|||+|||.++-..+..
T Consensus 924 ~gvmlvGptgsGKTt~~~~La~a 946 (2695)
T 4akg_A 924 QALILVGKAGCGKTATWKTVIDA 946 (2695)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999987766543
No 332
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=24.88 E-value=41 Score=33.38 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=17.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.+++.+++|||||.++-.....
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999987665443
No 333
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=24.73 E-value=35 Score=36.82 Aligned_cols=35 Identities=29% Similarity=0.286 Sum_probs=21.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEE
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLIL 159 (1165)
.-++|.+|||+|||-..-+.+- ++.....+.+++.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g-~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID-YINQTKSYHIITI 60 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH-HHHHHCCCEEEEE
T ss_pred CEEEEECCCCccHHHHHHHHHH-hCCCCCCCEEEEc
Confidence 3477899999999986554432 3222224555554
No 334
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=24.70 E-value=41 Score=34.05 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=18.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.-++|.++.|+|||.++-.....
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999887665443
No 335
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=24.49 E-value=55 Score=33.94 Aligned_cols=38 Identities=32% Similarity=0.238 Sum_probs=23.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecC
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPS 162 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPt 162 (1165)
.-+.|.+|.|+|||..+-..+...+.. +...++++.-.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~ 68 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLE 68 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEcc
Confidence 347788999999998766555333311 23445555443
No 336
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=24.29 E-value=43 Score=33.22 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=17.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.+++.+++|||||.++-.....
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999987765543
No 337
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=24.10 E-value=57 Score=37.52 Aligned_cols=38 Identities=13% Similarity=0.014 Sum_probs=25.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHh----CCCCeEEEEecCh
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRW----FPDGKIVFAAPSR 163 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~----~~~~rvLILvPtr 163 (1165)
++|.++.|+|||..+...+...+.. ...++++++.-..
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 7789999999998776554443321 1345788886553
No 338
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=24.07 E-value=72 Score=31.68 Aligned_cols=33 Identities=18% Similarity=0.073 Sum_probs=21.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEE
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFA 159 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLIL 159 (1165)
.+++.+.+|+|||.++-.....+ .. .+.++.++
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l-~~-~~~~~~~~ 47 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLL-QK-EGYRVEVL 47 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-HH-TTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH-Hh-cCCeEEEe
Confidence 47788999999998876655443 22 23445554
No 339
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=24.06 E-value=71 Score=32.70 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=23.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec
Q 037446 127 LVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161 (1165)
Q Consensus 127 Il~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP 161 (1165)
|....+|.|||.+++-.+..+.. .+.+++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~--~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKA--AGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHH--TTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHH--CCCCEEEEcc
Confidence 34457899999998887766543 3567887654
No 340
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=23.99 E-value=44 Score=34.68 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=18.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.+++.+|+|+||+.++...+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36788999999999887776554
No 341
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=23.92 E-value=49 Score=32.26 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=17.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.+++.++.|+|||.++-.....
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999987765543
No 342
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=23.90 E-value=43 Score=33.19 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=17.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.+++.++.|+|||.++-.....
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999987665543
No 343
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=23.74 E-value=38 Score=34.62 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=16.2
Q ss_pred CCccEEEEcHHHHHHHHHcCc
Q 037446 201 KTKRVFFVTPQVLEKDIQSGT 221 (1165)
Q Consensus 201 ~~~dIlVaTpq~L~~~l~~~~ 221 (1165)
.+.+..|.|.+.+..++..+.
T Consensus 46 ~G~dY~Fvs~~eF~~~i~~g~ 66 (186)
T 1ex7_A 46 NGKDYNFVSVDEFKSMIKNNE 66 (186)
T ss_dssp BTTTBEECCHHHHHHHHHTTC
T ss_pred CCceeEeecHHHHHHHHHcCC
Confidence 456888889998888877654
No 344
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=23.73 E-value=46 Score=34.29 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=19.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
..+++.+++|+|||.++-..+..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999877765543
No 345
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=23.65 E-value=42 Score=32.80 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=16.9
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpi 144 (1165)
..++|.++.|+|||.++-...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468899999999998765544
No 346
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=23.63 E-value=43 Score=33.40 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=18.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
..+++.+++|+|||.++-.....
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999987766544
No 347
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=23.55 E-value=37 Score=36.51 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=17.0
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpi 144 (1165)
+++++.+++|+|||..+-..+
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~ 94 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVA 94 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHH
Confidence 458999999999998765544
No 348
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=23.45 E-value=46 Score=33.00 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=17.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.+++.+++|+|||.++-.....
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999987665543
No 349
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=23.25 E-value=47 Score=41.48 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=19.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.++|+.+++|+|||.++-..+...
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999876655543
No 350
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=23.21 E-value=2.4e+02 Score=30.19 Aligned_cols=92 Identities=9% Similarity=0.008 Sum_probs=57.8
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHhhc----C--Ccc
Q 037446 131 PTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRASFW----K--TKR 204 (1165)
Q Consensus 131 ~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~l~----~--~~d 204 (1165)
...+||.....-.+..... .+.++||.+.++..+......+.+.+|.. +..++|+.+..+|..+. . ..+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~--~~~kvlIFs~~~~~~~~l~~~L~~~~g~~---~~~l~G~~~~~~R~~~i~~F~~~~~~~ 166 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKELNTE---VPFLYGELSKKERDDIISKFQNNPSVK 166 (271)
T ss_dssp STTCHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHHHCSC---CCEECTTSCHHHHHHHHHHHHHCTTCC
T ss_pred cccCHHHHHHHHHHHHHHh--CCCeEEEEeccHHHHHHHHHHHHHhcCCc---EEEEECCCCHHHHHHHHHHhcCCCCCC
Confidence 3568897654444433322 45789999999998888888887755654 56789998876664332 2 345
Q ss_pred EEEEcHHHHHHHHHcCccCCCCccEEEE
Q 037446 205 VFFVTPQVLEKDIQSGTCLMKYLVCLVI 232 (1165)
Q Consensus 205 IlVaTpq~L~~~l~~~~~~l~~~~lVVI 232 (1165)
|++.+.... ...+.+...+.||+
T Consensus 167 v~L~st~~~-----g~Glnl~~a~~VI~ 189 (271)
T 1z5z_A 167 FIVLSVKAG-----GFGINLTSANRVIH 189 (271)
T ss_dssp EEEEECCTT-----CCCCCCTTCSEEEE
T ss_pred EEEEehhhh-----cCCcCcccCCEEEE
Confidence 445444433 22345566666665
No 351
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=23.08 E-value=45 Score=33.37 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=18.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
..+++.+++|+|||.++-.....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999987665544
No 352
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=22.81 E-value=47 Score=33.27 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=17.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~ 147 (1165)
+++.+++|+|||.++-.....+
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhc
Confidence 6789999999998876655443
No 353
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=22.59 E-value=40 Score=36.53 Aligned_cols=21 Identities=48% Similarity=0.665 Sum_probs=16.9
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpi 144 (1165)
+++++.+|.|+|||..+-..+
T Consensus 45 ~GvlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 568999999999998765543
No 354
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=22.50 E-value=69 Score=35.47 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=24.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP 161 (1165)
++..+..|.|||.+++..+..+-.. +.++|+|--
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~ 50 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARS--GKKTLVIST 50 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHC--CCcEEEEeC
Confidence 4556899999999988877766443 567776653
No 355
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=22.39 E-value=49 Score=33.46 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=17.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.+++.+++|+|||.++-.....
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999987766544
No 356
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=22.33 E-value=40 Score=33.58 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=15.0
Q ss_pred CeEEEcCCCchHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVV 143 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lp 143 (1165)
-+++.+++|+|||..+-..
T Consensus 11 ~i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4778999999999865443
No 357
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=22.23 E-value=49 Score=34.05 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=18.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
.+++.+++|+|||.++-..+..+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 57889999999999877665443
No 358
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=22.12 E-value=49 Score=34.68 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=18.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
-++|.+|+|+||+.++...+..+
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999887766544
No 359
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=21.90 E-value=86 Score=34.91 Aligned_cols=18 Identities=39% Similarity=0.385 Sum_probs=15.2
Q ss_pred CCeEEEcCCCchHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAA 141 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~ 141 (1165)
..++|.++||+|||-..-
T Consensus 172 ~~v~i~G~~GsGKTTll~ 189 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIK 189 (330)
T ss_dssp CCEEEEESTTSCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 689999999999997533
No 360
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=21.90 E-value=1.4e+02 Score=27.58 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=26.0
Q ss_pred CeEEEEe-CchHHHHHHHHHHHhcCCCccceeeec
Q 037446 463 SRVIIFS-NFRGSVRDIMNALATIGDLVKATEFIG 496 (1165)
Q Consensus 463 ~kvIVF~-~sr~~ae~L~~~L~~~g~~i~~~~l~G 496 (1165)
.++|||| .+-..+..++..|...| +++..+.|
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G--~~v~~l~G 122 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLG--VNVYQLEG 122 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTT--CCCEEETT
T ss_pred CeEEEEECCCChHHHHHHHHHHHcC--CceEEEeC
Confidence 7999999 47677788999999999 56666666
No 361
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=21.90 E-value=61 Score=34.72 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=20.6
Q ss_pred hhcCCeEEEcCCCchHHHHHHHHHHH
Q 037446 121 ALFSNTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 121 ll~rnvIl~a~TGsGKTL~a~lpil~ 146 (1165)
+.+..++|.+++|+|||.++-..+..
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 33578999999999999987666543
No 362
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=21.77 E-value=50 Score=34.44 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=19.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
..+++.+++|+|||.++-.....+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999887766544
No 363
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=21.77 E-value=47 Score=33.87 Aligned_cols=43 Identities=21% Similarity=0.140 Sum_probs=25.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACH 174 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~ 174 (1165)
++|.++.|||||..+.-.+ .. +.++++|+.....-..+.+.+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la----~~--~~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI----GD--APQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH----CS--CSSEEEEECCCC------CHHH
T ss_pred EEEECCCCCcHHHHHHHHH----hc--CCCeEEEecCCCCCHHHHHHHH
Confidence 5789999999997654432 22 4578999986554444444443
No 364
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=21.57 E-value=42 Score=34.34 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=17.0
Q ss_pred CeEEEcCCCchHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil 145 (1165)
++++.++.|+|||.++-..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999998766543
No 365
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=21.45 E-value=86 Score=36.15 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEE
Q 037446 124 SNTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIV 157 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvL 157 (1165)
+.+.|.+++|+|||......+...-..++.-.++
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I 208 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 208 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE
Confidence 7899999999999998766544332333333333
No 366
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=21.36 E-value=70 Score=33.01 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=23.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEec
Q 037446 127 LVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAAP 161 (1165)
Q Consensus 127 Il~a~TGsGKTL~a~lpil~~L~~~~~~rvLILvP 161 (1165)
+.....|.|||.+++..+..+-. .+.++++|=.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~--~g~~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGD--RGRKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHh--cCCeEEEEeC
Confidence 33467899999998887766544 2457777643
No 367
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.30 E-value=95 Score=45.06 Aligned_cols=71 Identities=11% Similarity=0.050 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHCCCCCCCCCCChHHHHHHHHHhh----c-CCeEEEcCCCchHHHHHHHHHHHHHHhC-CCCeEEEEec
Q 037446 88 SLCHVQIDAEAAKTWIYPVNVPVRDYQFAITKTAL----F-SNTLVALPTGLGKTLIAAVVIYNFFRWF-PDGKIVFAAP 161 (1165)
Q Consensus 88 ~L~~~Ll~~L~~~g~~~Pt~IQlr~yQ~eal~~ll----~-rnvIl~a~TGsGKTL~a~lpil~~L~~~-~~~rvLILvP 161 (1165)
.|...+.+.+...++.. .+.+..=+-.+. - +.+++.+|||+|||.++-..+..+-... .....-+|-|
T Consensus 872 ~l~~ai~~~~~~~~L~~------~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNP 945 (3245)
T 3vkg_A 872 QLRKKIQEIAKQRHLVT------KQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDP 945 (3245)
T ss_dssp HHHHHHHHHHHHTTCCC------CHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECT
T ss_pred HHHHHHHHHHHHcCCcc------CHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECC
Confidence 45566677777777643 222222111222 2 6788999999999999877665432211 1123445566
Q ss_pred ChhH
Q 037446 162 SRPL 165 (1165)
Q Consensus 162 tr~L 165 (1165)
. ++
T Consensus 946 K-ai 948 (3245)
T 3vkg_A 946 K-AI 948 (3245)
T ss_dssp T-TS
T ss_pred C-CC
Confidence 5 44
No 368
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=21.23 E-value=46 Score=34.14 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=18.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
++++.+++|+|||.++-.....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999877665443
No 369
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=21.05 E-value=82 Score=33.18 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=23.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 127 LVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 127 Il~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
+.....|.|||.+++..+..+.. .+.++++|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~--~g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQ--LGHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHh--CCCcEEEEE
Confidence 45678999999998887766544 245777764
No 370
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=21.01 E-value=46 Score=33.89 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=16.5
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpi 144 (1165)
.-+++++++|+|||.++-..+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468899999999998765543
No 371
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=21.01 E-value=46 Score=33.50 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=15.5
Q ss_pred CCeEEEcCCCchHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVV 143 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lp 143 (1165)
.-+++.+++|+|||.++-..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L 26 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRI 26 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 34678899999999875543
No 372
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=21.00 E-value=78 Score=34.88 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=22.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
-+.+.+++|+|||-.....+..+ . ...+++++..
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll-~-~~~g~V~l~g 137 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYY-Q-NLGKKVMFCA 137 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-H-TTTCCEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-H-hcCCEEEEEe
Confidence 46678999999998766554332 2 2356666654
No 373
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=20.85 E-value=81 Score=35.38 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=24.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHhCCCCeEEEEe
Q 037446 126 TLVALPTGLGKTLIAAVVIYNFFRWFPDGKIVFAA 160 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~~L~~~~~~rvLILv 160 (1165)
+++.+..|.|||.+++..+..+-.. +.++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEK--GLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHS--SCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEe
Confidence 4566889999999988877665443 55677665
No 374
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=20.83 E-value=1.1e+02 Score=37.38 Aligned_cols=94 Identities=10% Similarity=0.041 Sum_probs=48.4
Q ss_pred CchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeC--------CCChHHHHh----hc
Q 037446 133 GLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTG--------QISPTKRAS----FW 200 (1165)
Q Consensus 133 GsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G--------~~~~~~~~~----l~ 200 (1165)
..+|-....-.+...+...+++++||.|+++.-+....+.+..........+..++| +.+..+|.. +.
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 345544433333333333456789999999999999998888753333344555644 555444432 22
Q ss_pred --CCccEEEEcHHHHHHHHHcCccCCCCccEEEE
Q 037446 201 --KTKRVFFVTPQVLEKDIQSGTCLMKYLVCLVI 232 (1165)
Q Consensus 201 --~~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVI 232 (1165)
...+|+|+|- .-...+.+.++++||.
T Consensus 458 ~~g~~~vLVaT~------v~~~GiDip~v~~VI~ 485 (696)
T 2ykg_A 458 ASGDHNILIATS------VADEGIDIAQCNLVIL 485 (696)
T ss_dssp ---CCSCSEEEE------SSCCC---CCCSEEEE
T ss_pred hcCCccEEEEec------hhhcCCcCccCCEEEE
Confidence 2468999983 1123456777888886
No 375
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=20.76 E-value=43 Score=34.75 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=17.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAVVIY 145 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~lpil 145 (1165)
..+++.+++|+|||.++-..+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999998766543
No 376
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=20.70 E-value=47 Score=33.44 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=14.8
Q ss_pred CeEEEcCCCchHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVV 143 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lp 143 (1165)
-+.+.+|+|+|||..+-..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L 27 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRAL 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4678899999999865443
No 377
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=20.57 E-value=57 Score=31.64 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=17.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.+++.+..|+|||.++-.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3688999999999887665543
No 378
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=20.56 E-value=57 Score=36.83 Aligned_cols=19 Identities=37% Similarity=0.343 Sum_probs=15.8
Q ss_pred CCeEEEcCCCchHHHHHHH
Q 037446 124 SNTLVALPTGLGKTLIAAV 142 (1165)
Q Consensus 124 rnvIl~a~TGsGKTL~a~l 142 (1165)
..++|.++||+|||-..-+
T Consensus 176 ~~i~ivG~sGsGKSTll~~ 194 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKA 194 (361)
T ss_dssp CCEEEEESSSSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 6899999999999976444
No 379
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=20.34 E-value=1.3e+02 Score=38.55 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=48.6
Q ss_pred CchHHHHHHHHHHHHHHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEE--------EEeCCCChHHHHh----hc
Q 037446 133 GLGKTLIAAVVIYNFFRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTI--------DMTGQISPTKRAS----FW 200 (1165)
Q Consensus 133 GsGKTL~a~lpil~~L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~--------~l~G~~~~~~~~~----l~ 200 (1165)
.++|.....-.+...+...++.++||.++++..+....+.+.+..+.....+. .++|+.+..+|.. +.
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 46676544333333333345689999999999999999998875322222222 3345565554432 22
Q ss_pred C--CccEEEEcHHHHHHHHHcCccCCCCccEEEEcc
Q 037446 201 K--TKRVFFVTPQVLEKDIQSGTCLMKYLVCLVIDE 234 (1165)
Q Consensus 201 ~--~~dIlVaTpq~L~~~l~~~~~~l~~~~lVVIDE 234 (1165)
. ..+|+|+|- .+ ...+.+..+++||+=.
T Consensus 691 ~~g~~~VLVaT~-~~-----~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 691 TSKDNRLLIATS-VA-----DEGIDIVQCNLVVLYE 720 (936)
T ss_dssp ---CCSEEEEEC-C-----------CCCCSEEEEES
T ss_pred ccCCeeEEEEeC-ch-----hcCCcchhCCEEEEeC
Confidence 2 368999994 22 2245677888888633
No 380
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=20.26 E-value=57 Score=32.84 Aligned_cols=23 Identities=17% Similarity=-0.009 Sum_probs=17.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYNF 147 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~~ 147 (1165)
-+++.++.|+|||.++-.....+
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 46788999999999877665443
No 381
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=20.25 E-value=59 Score=31.91 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=16.1
Q ss_pred CeEEEcCCCchHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVI 144 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpi 144 (1165)
.+++.++.|+|||.++-...
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47789999999998766544
No 382
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=20.14 E-value=51 Score=40.06 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.5
Q ss_pred CeEEEcCCCchHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAV 142 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~l 142 (1165)
++|+.+++|+|||..+-.
T Consensus 329 ~vLL~GppGtGKT~LAr~ 346 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQF 346 (595)
T ss_dssp CEEEEESSCCTHHHHHHS
T ss_pred ceEEECCCchHHHHHHHH
Confidence 799999999999986533
No 383
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=20.13 E-value=59 Score=32.24 Aligned_cols=21 Identities=24% Similarity=0.037 Sum_probs=16.8
Q ss_pred eEEEcCCCchHHHHHHHHHHH
Q 037446 126 TLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 126 vIl~a~TGsGKTL~a~lpil~ 146 (1165)
+++.+..|||||.++-.....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578899999999887665543
No 384
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=20.09 E-value=57 Score=33.44 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=17.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHH
Q 037446 125 NTLVALPTGLGKTLIAAVVIYN 146 (1165)
Q Consensus 125 nvIl~a~TGsGKTL~a~lpil~ 146 (1165)
.+.|.+++|+|||.++-+....
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999887665543
No 385
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=20.02 E-value=83 Score=40.53 Aligned_cols=80 Identities=13% Similarity=0.144 Sum_probs=57.6
Q ss_pred HHhCCCCeEEEEecChhHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHh----hcCC---ccEEEEcHHHHHHHHHcC
Q 037446 148 FRWFPDGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPTKRAS----FWKT---KRVFFVTPQVLEKDIQSG 220 (1165)
Q Consensus 148 L~~~~~~rvLILvPtr~La~Q~~~e~~kl~g~~~~~v~~l~G~~~~~~~~~----l~~~---~dIlVaTpq~L~~~l~~~ 220 (1165)
+...++.++||.|+++.-+....+.+....|. .+..++|+.+..++.. +..+ .+|+|+| ..+ ..
T Consensus 498 l~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~---~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-~v~-----~~ 568 (968)
T 3dmq_A 498 LTSHRSQKVLVICAKAATALQLEQVLREREGI---RAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-EIG-----SE 568 (968)
T ss_dssp HHHTSSSCCCEECSSTHHHHHHHHHHHTTTCC---CEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-CCT-----TC
T ss_pred HHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCC---cEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-chh-----hc
Confidence 33356789999999999888888888754454 4888999988766543 2333 7899999 443 23
Q ss_pred ccCCCCccEEEEcccc
Q 037446 221 TCLMKYLVCLVIDEAH 236 (1165)
Q Consensus 221 ~~~l~~~~lVVIDEAH 236 (1165)
.+.+..+++||+-+..
T Consensus 569 GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 569 GRNFQFASHMVMFDLP 584 (968)
T ss_dssp SSCCTTCCEEECSSCC
T ss_pred CCCcccCcEEEEecCC
Confidence 5677788898886655
Done!