BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037448
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4J2F|A Chain A, Crystal Structure Of A Glutathione Transferase Family
Member From Ricinus Communis, Target Efi-501866
Length = 223
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 44 FFGGNQIGFLDIAFGSYLGWLRVTEKINEVKLLDEVKTPGLLKWAERFCADAAVKDVMPE 103
+FGG++IG +DIAF WL V E++ VK+L+ K P L W E F +K+ +P+
Sbjct: 145 YFGGDKIGIVDIAFCGIAHWLGVIEEVAGVKVLESQKFPRLHAWTENFKEAPIIKENLPD 204
Query: 104 TDKLA 108
D++
Sbjct: 205 RDQMT 209
>pdb|1GWC|A Chain A, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|B Chain B, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|C Chain C, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
Length = 230
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%)
Query: 34 AFVKCSKGKPFFGGNQIGFLDIAFGSYLGWLRVTEKINEVKLLDEVKTPGLLKWAERFCA 93
A +CSKG FFGG+ +G +D+A G L W++VTE ++ K+ D KTP L W ERF
Sbjct: 142 ALRECSKGGGFFGGDGVGLVDVALGGVLSWMKVTEALSGDKIFDAAKTPLLAAWVERFIE 201
Query: 94 DAAVKDVMPETDKL 107
A K +P+ +L
Sbjct: 202 LDAAKAALPDVGRL 215
>pdb|2VO4|A Chain A, Glutathione Transferase From Glycine Max
pdb|2VO4|B Chain B, Glutathione Transferase From Glycine Max
pdb|3FHS|A Chain A, Glutathione Transferase From Glycine Max At 2.7 Resolution
pdb|3FHS|B Chain B, Glutathione Transferase From Glycine Max At 2.7 Resolution
Length = 219
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 42 KPFFGGNQIGFLDIAFGSYLGWLRVTEKINEVKLLDEVKTPGLLKWAERFCADAAVKDVM 101
K +FGG+ +GF+DIA + W + E + + E + P + WA+R +V +
Sbjct: 142 KTYFGGDNLGFVDIALVPFYTWFKAYETFGTLNI--ESECPKFIAWAKRCLQKESVAKSL 199
Query: 102 PETDKLAKL 110
P+ K+ +
Sbjct: 200 PDQQKVYEF 208
>pdb|3RBT|A Chain A, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|B Chain B, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|C Chain C, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|D Chain D, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
Length = 246
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 38 CSKGKPFFGGNQIGFLDIAFGSYLGWLRVTEKINEVKLLDEVKT-PGLLKWAERFCADAA 96
++G +FGGN+ G LD ++ L + +N+ K +++ P W ++ D
Sbjct: 160 TNRGTNYFGGNRPGMLDYMVWPWVERLYLLRCVNDRKFVEKKSLFPNFADWGDQMQLDDI 219
Query: 97 VK 98
VK
Sbjct: 220 VK 221
>pdb|3VLN|A Chain A, Human Glutathione Transferase O1-1 C32s Mutant In Complex
With Ascorbic Acid
Length = 241
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 36 VKCSKGKPFFGGNQIGFLDIAFGSYLGWLRVTEKINEVKLLDEV-KTPGLLKWAERFCAD 94
V +K FFGGN I +D YL W E++ +KL + V TP L W D
Sbjct: 156 VLTNKKTTFFGGNSISMID-----YLIWPWF-ERLEAMKLNECVDHTPKLKLWMAAMKED 209
Query: 95 AAVKDVM 101
V ++
Sbjct: 210 PTVSALL 216
>pdb|3LFL|A Chain A, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
pdb|3LFL|B Chain B, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
pdb|3LFL|C Chain C, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
Length = 240
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 36 VKCSKGKPFFGGNQIGFLDIAFGSYLGWLRVTEKINEVKLLDEV-KTPGLLKWAERFCAD 94
V +K FFGGN I +D YL W E++ +KL + V TP L W D
Sbjct: 155 VLTNKKTTFFGGNSISMID-----YLIWPWF-ERLEAMKLNECVDHTPKLKLWMAAMKED 208
Query: 95 AAVKDVM 101
V ++
Sbjct: 209 PTVSALL 215
>pdb|1EEM|A Chain A, Glutathione Transferase From Homo Sapiens
Length = 241
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 36 VKCSKGKPFFGGNQIGFLDIAFGSYLGWLRVTEKINEVKLLDEV-KTPGLLKWAERFCAD 94
V +K FFGGN I +D YL W E++ +KL + V TP L W D
Sbjct: 156 VLTNKKTTFFGGNSISMID-----YLIWPWF-ERLEAMKLNECVDHTPKLKLWMAAMKED 209
Query: 95 AAVKDVM 101
V ++
Sbjct: 210 PTVSALL 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,195,683
Number of Sequences: 62578
Number of extensions: 110021
Number of successful extensions: 189
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 184
Number of HSP's gapped (non-prelim): 8
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)