BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037449
(98 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZR|KK Chain k, Localization Of The Large Subunit Ribosomal Proteins
Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
Translating 80s Ribosome
Length = 112
Score = 157 bits (397), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/91 (84%), Positives = 85/91 (93%)
Query: 1 MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
MAP QP +GLFVG+NKG++VTK+EL PR +DRKGK +KRVHFVR +IREVAGFAPYEKRI
Sbjct: 1 MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRI 60
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
TELLKVGKDKRALKVAKRKLGTHKRAKKKRE
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
>pdb|4A18|Q Chain Q, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|Q Chain Q, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|Q Chain Q, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|Q Chain Q, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2
Length = 104
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 67/90 (74%), Gaps = 6/90 (6%)
Query: 9 GLFVGLNKGYIVTK--KELQPRSA-DRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLK 65
G VG+NKG+I T+ K+LQ SA RKGK KRV VR VIREV GFAPYEKRI EL+K
Sbjct: 4 GQAVGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIK 63
Query: 66 VG--KD-KRALKVAKRKLGTHKRAKKKREI 92
G KD K+A K+A+++LGTH+RAK K+ +
Sbjct: 64 AGSAKDSKKATKIARKRLGTHRRAKVKKAL 93
>pdb|3ZF7|MM Chain m, High-resolution Cryo-electron Microscopy Structure Of
The Trypanosoma Brucei Ribosome
Length = 109
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 59/85 (69%)
Query: 6 PNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLK 65
P TG+ G NKGY T++ +P S DR K++ V+ +I ++ GF+P E+R+ ELL+
Sbjct: 11 PRTGIIAGFNKGYKTTRRARRPSSNDRYALPHKKLRAVKAIISDLVGFSPMERRVQELLR 70
Query: 66 VGKDKRALKVAKRKLGTHKRAKKKR 90
VGKDKRALK K++LG+ K AKK+R
Sbjct: 71 VGKDKRALKFCKKRLGSIKAAKKRR 95
>pdb|3IZS|KK Chain k, Localization Of The Large Subunit Ribosomal Proteins
Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3U5E|II Chain i, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|II Chain i, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|II Chain i, Cryo-Em Structure Of The 60s Ribosomal Subunit In
Complex With Arx1 And Rei1
Length = 100
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 59/84 (70%)
Query: 8 TGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 67
TG+ +GLNKG VT P+ + +KG S R FVR+++RE+AG +PYE+R+ +L++
Sbjct: 5 TGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNS 64
Query: 68 KDKRALKVAKRKLGTHKRAKKKRE 91
+KRA KVAK++LG+ RAK K E
Sbjct: 65 GEKRARKVAKKRLGSFTRAKAKVE 88
>pdb|3BBO|U Chain U, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 199
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 14 LNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITEL 63
+NKG +T K+++PR+ R + + V+R++ F Y+K + L
Sbjct: 105 VNKG--ITLKKVKPRARGRSYMILRPTCHITIVLRDITHFDSYDKFLESL 152
>pdb|3LM2|A Chain A, Crystal Structure Of Putative Kinase. (17743352) From
Agrobacterium Tumefaciens Str. C58 (Dupont) At 1.70 A
Resolution
pdb|3LM2|B Chain B, Crystal Structure Of Putative Kinase. (17743352) From
Agrobacterium Tumefaciens Str. C58 (Dupont) At 1.70 A
Resolution
Length = 226
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 32 RKGKTSKRVHFVRTVIREVAGFAPYEKRITELLK 65
RKGKT + H+V RE G A ++KR+ ++++
Sbjct: 144 RKGKTYE--HYVSEAYREKKGNAKWQKRVQDVVE 175
>pdb|3DKT|A Chain A, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|B Chain B, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|C Chain C, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|D Chain D, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|E Chain E, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|F Chain F, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|G Chain G, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|H Chain H, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|I Chain I, Crystal Structure Of Thermotoga Maritima Encapsulin
pdb|3DKT|J Chain J, Crystal Structure Of Thermotoga Maritima Encapsulin
Length = 265
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 35 KTSKRVHFVRTVIREVAGFAPYEKRITELLKVGK 68
T + ++F ++E AG P EKR+ E L+ GK
Sbjct: 173 NTDRWINF----LKEEAGHYPLEKRVEECLRGGK 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,585,316
Number of Sequences: 62578
Number of extensions: 82047
Number of successful extensions: 171
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 9
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)