Query 037449
Match_columns 98
No_of_seqs 123 out of 210
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 12:22:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00196 60S ribosomal protein 100.0 6.2E-53 1.4E-57 293.3 9.1 91 7-97 2-92 (98)
2 PF01158 Ribosomal_L36e: Ribos 100.0 5.9E-53 1.3E-57 293.1 6.2 92 6-97 1-92 (98)
3 KOG3452 60S ribosomal protein 100.0 4E-49 8.6E-54 275.4 8.2 91 7-97 4-94 (102)
4 COG5051 RPL36A Ribosomal prote 100.0 3.2E-35 7E-40 203.3 7.4 90 8-97 5-94 (97)
5 COG1094 Predicted RNA-binding 54.6 19 0.00042 28.0 3.7 54 43-98 67-135 (194)
6 PF10607 CLTH: CTLH/CRA C-term 41.7 50 0.0011 22.4 3.8 28 53-80 40-67 (145)
7 PRK14132 riboflavin kinase; Pr 37.9 17 0.00036 26.4 1.0 16 42-57 22-37 (126)
8 PF08068 DKCLD: DKCLD (NUC011) 35.8 20 0.00044 23.2 1.0 19 49-67 25-43 (59)
9 KOG2659 LisH motif-containing 30.2 52 0.0011 26.2 2.7 63 33-95 77-146 (228)
10 PF13058 DUF3920: Protein of u 30.1 56 0.0012 24.0 2.6 28 51-85 97-124 (126)
11 PF12169 DNA_pol3_gamma3: DNA 26.7 1.2E+02 0.0025 20.5 3.7 35 45-79 4-40 (143)
12 PF01982 CTP-dep_RFKase: Domai 26.6 39 0.00085 24.3 1.3 16 42-57 16-31 (121)
13 PRK14165 winged helix-turn-hel 26.5 33 0.00072 26.6 1.0 17 42-58 110-126 (217)
14 PF04328 DUF466: Protein of un 21.9 74 0.0016 20.4 1.8 22 39-60 8-29 (65)
15 KOG0396 Uncharacterized conser 21.5 98 0.0021 26.7 2.9 26 58-83 196-221 (389)
16 COG1339 Transcriptional regula 20.3 57 0.0012 26.0 1.2 15 44-58 110-124 (214)
No 1
>PTZ00196 60S ribosomal protein L36; Provisional
Probab=100.00 E-value=6.2e-53 Score=293.25 Aligned_cols=91 Identities=62% Similarity=0.922 Sum_probs=89.2
Q ss_pred CccceeeecCCceeccccCCCCcccccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHH
Q 037449 7 NTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRA 86 (98)
Q Consensus 7 ~~giavGlnKGhkvtk~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfaPYEkr~~ELlk~skdKrAlKf~KKrlGth~RA 86 (98)
++||||||||||+||++.+++|||+++|.+|||++||||||+|||||||||+|+||||++|+|||||||+|+|||||+||
T Consensus 2 ~~g~avGlnKGh~vtk~~~~~r~s~rkg~~tkr~~fVr~vIrEV~GfaPYErr~mELLkv~kdKrAlKfaKkRlGth~Ra 81 (98)
T PTZ00196 2 RTGIAVGLNKGHIVTKRARKPSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKRALKYAKKRLGTHKRA 81 (98)
T ss_pred CCceeeecCCCcccCcCCCCCCcccccCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHhcchHHHHHHHHHHhhhHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q 037449 87 KKKREIYRISF 97 (98)
Q Consensus 87 KrK~eel~~~~ 97 (98)
|+|+|||+++.
T Consensus 82 K~Kreel~~vl 92 (98)
T PTZ00196 82 KAKRDEIQEAL 92 (98)
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 2
>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. The L36E ribosomal family consists of mammalian, Caenorhabditis elegans and Drosophila L36, Candida albicans L39, and yeast YL39 ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1B_Q 4A1D_Q 4A19_Q 4A18_Q 3IZS_k 3IZR_k.
Probab=100.00 E-value=5.9e-53 Score=293.07 Aligned_cols=92 Identities=63% Similarity=0.910 Sum_probs=78.8
Q ss_pred CCccceeeecCCceeccccCCCCcccccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHH
Q 037449 6 PNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKR 85 (98)
Q Consensus 6 ~~~giavGlnKGhkvtk~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfaPYEkr~~ELlk~skdKrAlKf~KKrlGth~R 85 (98)
++|||||||||||+||+|.+++|||+++|.+|+|++||||||+|||||||||+|+||||++|+||+||||+|+|||||+|
T Consensus 1 ~~~~iavGlnkGh~vtk~~~~~r~s~~kg~~tk~~kfvr~vIrEv~GfaPYEkr~mELlkv~kdKrAlKf~KKRlGth~R 80 (98)
T PF01158_consen 1 PRYGIAVGLNKGHKVTKNVSKPRPSRRKGRLTKRTKFVRDVIREVCGFAPYEKRAMELLKVSKDKRALKFAKKRLGTHIR 80 (98)
T ss_dssp --TTSTTSSS-S-----TTS---STTS-SHHCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHH
T ss_pred CCCceeeeCCCCcccCCCCCCCCcccccCccchhHHHHHHHHHHhcCCChHHHHHHHHHhcchhHHHHHHHHHHhhhhHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 037449 86 AKKKREIYRISF 97 (98)
Q Consensus 86 AKrK~eel~~~~ 97 (98)
||+|+|||+++.
T Consensus 81 AKrKrEel~~vl 92 (98)
T PF01158_consen 81 AKRKREELSNVL 92 (98)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
No 3
>KOG3452 consensus 60S ribosomal protein L36 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-49 Score=275.40 Aligned_cols=91 Identities=65% Similarity=0.918 Sum_probs=89.3
Q ss_pred CccceeeecCCceeccccCCCCcccccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHH
Q 037449 7 NTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRA 86 (98)
Q Consensus 7 ~~giavGlnKGhkvtk~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfaPYEkr~~ELlk~skdKrAlKf~KKrlGth~RA 86 (98)
.+|++|||||||++|+++++||+|+++|.+|+|++||||+|+|||||||||+|+||||++|+||||+||+|+|||||+||
T Consensus 4 ~~~~~vglnkgh~~tk~~~~pr~s~~kg~~sk~tkfvr~lirEv~G~aPyErr~meLlkvskdkrA~K~lKkRlGth~RA 83 (102)
T KOG3452|consen 4 CYGLAVGLNKGHKVTKRVSKPRQSRRKGETSKRTKFVRDLIREVAGFAPYERRAMELLKVSKDKRALKLLKKRLGTHKRA 83 (102)
T ss_pred ccceeecccccchhhcccCCCCcCccccchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHcccHHHHHHHHHHhhHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q 037449 87 KKKREIYRISF 97 (98)
Q Consensus 87 KrK~eel~~~~ 97 (98)
|+|+|||+||.
T Consensus 84 k~KrEELsnvl 94 (102)
T KOG3452|consen 84 KRKREELSNVL 94 (102)
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 4
>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-35 Score=203.31 Aligned_cols=90 Identities=50% Similarity=0.792 Sum_probs=88.3
Q ss_pred ccceeeecCCceeccccCCCCcccccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHHH
Q 037449 8 TGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK 87 (98)
Q Consensus 8 ~giavGlnKGhkvtk~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfaPYEkr~~ELlk~skdKrAlKf~KKrlGth~RAK 87 (98)
.|+++|||+|-+||++...+|||+++|.+|+|+.||+++++|++||+|||+++||||++|.|++|.|++|||||||+||+
T Consensus 5 ~g~~~glNkgKkvt~r~p~~rps~kkgq~s~Rt~fvrsivrEiaGlsPyErr~i~Lirns~~krArKlakKRLGs~kRAk 84 (97)
T COG5051 5 PGLVVGLNKGKKVTKRQPPERPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKRARKLAKKRLGSLKRAK 84 (97)
T ss_pred cchhhhhcccceeeeccCCCCcchhhhccccHHHHHHHHHHHHccCCHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 037449 88 KKREIYRISF 97 (98)
Q Consensus 88 rK~eel~~~~ 97 (98)
.|.|||.+|.
T Consensus 85 aKvEel~~~i 94 (97)
T COG5051 85 AKVEELTSVI 94 (97)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 5
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]
Probab=54.57 E-value=19 Score=28.00 Aligned_cols=54 Identities=22% Similarity=0.433 Sum_probs=43.3
Q ss_pred HHHHHHHh-hccchhHHHHHHHHh-------------hcchhHHHHHHHHhh-hhhHHHHHHHHHHhhhcC
Q 037449 43 VRTVIREV-AGFAPYEKRITELLK-------------VGKDKRALKVAKRKL-GTHKRAKKKREIYRISFV 98 (98)
Q Consensus 43 Vr~vIrEV-~GfaPYEkr~~ELlk-------------~skdKrAlKf~KKrl-Gth~RAKrK~eel~~~~~ 98 (98)
.+|+|+-+ -||.|=+ ++-||. ++....++.=+|-|+ |.--++++-.|+|+.+++
T Consensus 67 a~d~VkAIgrGF~pe~--A~~LL~d~~~levIdi~~~~~~~~~~l~R~kgRIIG~~GkTr~~IE~lt~~~I 135 (194)
T COG1094 67 ARDVVKAIGRGFPPEK--ALKLLEDDYYLEVIDLKDVVTLSGDHLRRIKGRIIGREGKTRRAIEELTGVYI 135 (194)
T ss_pred HHHHHHHHhcCCCHHH--HHHHhcCCcEEEEEEHHHhccCchhhhhHhhceeeCCCchHHHHHHHHhCCeE
Confidence 57888887 7999865 666766 355677788888887 999999999999998763
No 6
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=41.66 E-value=50 Score=22.39 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=23.9
Q ss_pred cchhHHHHHHHHhhcchhHHHHHHHHhh
Q 037449 53 FAPYEKRITELLKVGKDKRALKVAKRKL 80 (98)
Q Consensus 53 faPYEkr~~ELlk~skdKrAlKf~KKrl 80 (98)
|.=+-...+|||+.++-..|+.|+++.+
T Consensus 40 f~L~~q~fiell~~~~~~~Ai~y~r~~l 67 (145)
T PF10607_consen 40 FELRCQQFIELLREGDIMEAIEYARKHL 67 (145)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4455668899999999999999999988
No 7
>PRK14132 riboflavin kinase; Provisional
Probab=37.90 E-value=17 Score=26.45 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=13.7
Q ss_pred HHHHHHHHhhccchhH
Q 037449 42 FVRTVIREVAGFAPYE 57 (98)
Q Consensus 42 fVr~vIrEV~GfaPYE 57 (98)
..++-++|.+||.||.
T Consensus 22 ~Y~~qf~~~LGf~PyP 37 (126)
T PRK14132 22 PYKEKFKEKLGFTPYE 37 (126)
T ss_pred HHHHHHHHHhCCcCCC
Confidence 3577889999999996
No 8
>PF08068 DKCLD: DKCLD (NUC011) domain; InterPro: IPR012960 This is an N-terminal domain of dyskerin-like proteins, which is often associated with the TruB N-terminal(IPR002501 from INTERPRO) and PUA(IPR002478 from INTERPRO) domains [].; PDB: 3ZV0_D 3UAI_A 3U28_A 2AUS_C 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A ....
Probab=35.77 E-value=20 Score=23.17 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=13.5
Q ss_pred HhhccchhHHHHHHHHhhc
Q 037449 49 EVAGFAPYEKRITELLKVG 67 (98)
Q Consensus 49 EV~GfaPYEkr~~ELlk~s 67 (98)
.-+|..|++|-+-|+|+.|
T Consensus 25 ~~~G~~P~~R~i~~~i~~G 43 (59)
T PF08068_consen 25 PPYGCSPLKRPIEEYIKYG 43 (59)
T ss_dssp TTSS--GGGS-HHHHHHTE
T ss_pred cccCcCcccCCHHHHHhCC
Confidence 4589999999999999854
No 9
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=30.17 E-value=52 Score=26.20 Aligned_cols=63 Identities=24% Similarity=0.314 Sum_probs=42.5
Q ss_pred cCCCCchhHHHHHHHHHhhccch------hHHHHHHHHhhcchhHHHHHHHHhhhhhHHH-HHHHHHHhh
Q 037449 33 KGKTSKRVHFVRTVIREVAGFAP------YEKRITELLKVGKDKRALKVAKRKLGTHKRA-KKKREIYRI 95 (98)
Q Consensus 33 kg~~tkr~kfVr~vIrEV~GfaP------YEkr~~ELlk~skdKrAlKf~KKrlGth~RA-KrK~eel~~ 95 (98)
.|....=..++.++-.|+..-.+ -..+.+|||+.++-..|++|++-+|--.--- -.+.+++..
T Consensus 77 ~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~ 146 (228)
T KOG2659|consen 77 EGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELER 146 (228)
T ss_pred hccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHH
Confidence 34444445566666667766555 3569999999999999999999988443221 245555543
No 10
>PF13058 DUF3920: Protein of unknown function (DUF3920)
Probab=30.07 E-value=56 Score=24.04 Aligned_cols=28 Identities=50% Similarity=0.634 Sum_probs=22.5
Q ss_pred hccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHH
Q 037449 51 AGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKR 85 (98)
Q Consensus 51 ~GfaPYEkr~~ELlk~skdKrAlKf~KKrlGth~R 85 (98)
.|-.|||.|.||- | |..|+-..|-..+|
T Consensus 97 vg~e~yEeR~ie~-----D--Ar~FAe~kl~ey~~ 124 (126)
T PF13058_consen 97 VGKEPYEERWIEK-----D--ARAFAERKLDEYKR 124 (126)
T ss_pred eccchHHHHHHHH-----H--HHHHHHHHHHHHhc
Confidence 7999999999984 5 88999887765543
No 11
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=26.67 E-value=1.2e+02 Score=20.51 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=25.9
Q ss_pred HHHHHhhccchhHH--HHHHHHhhcchhHHHHHHHHh
Q 037449 45 TVIREVAGFAPYEK--RITELLKVGKDKRALKVAKRK 79 (98)
Q Consensus 45 ~vIrEV~GfaPYEk--r~~ELlk~skdKrAlKf~KKr 79 (98)
+-|+++.|..|.|. .+++.|-.++-..|+..+.+=
T Consensus 4 e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l 40 (143)
T PF12169_consen 4 EDVREILGLVDEEQIFELLDAILEGDAAEALELLNEL 40 (143)
T ss_dssp HHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56899999999997 556666677777888877653
No 12
>PF01982 CTP-dep_RFKase: Domain of unknown function DUF120; InterPro: IPR023602 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents a CTP-dependent riboflavin kinase domain, found primarily in archaea, that catalyses the phosphorylation of riboflavin to form flavin mononucleotide in riboflavin biosynthesis. Its structure resembles a RIFT barrel, structurally similar to but topologically distinct from bacterial and eukaryotic examples []. The N-terminal is a winged helix-turn-helix DNA-binding domain, and the C-terminal half is most similar in sequence to a group of cradle-loop barrels.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2VBV_A 2VBU_A 2VBS_A 2VBT_A 2P3M_A 2OYN_A 3CTA_A.
Probab=26.56 E-value=39 Score=24.34 Aligned_cols=16 Identities=44% Similarity=0.659 Sum_probs=10.6
Q ss_pred HHHHHHHHhhccchhH
Q 037449 42 FVRTVIREVAGFAPYE 57 (98)
Q Consensus 42 fVr~vIrEV~GfaPYE 57 (98)
..++-++|.+||.||.
T Consensus 16 ~Y~~qf~~~LGf~PyP 31 (121)
T PF01982_consen 16 GYRRQFREKLGFEPYP 31 (121)
T ss_dssp HHHHHHHHHCSS---S
T ss_pred HHHHHHHHHhCCCCCC
Confidence 3577889999999996
No 13
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=26.47 E-value=33 Score=26.62 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.0
Q ss_pred HHHHHHHHhhccchhHH
Q 037449 42 FVRTVIREVAGFAPYEK 58 (98)
Q Consensus 42 fVr~vIrEV~GfaPYEk 58 (98)
..++-++|.+||.||.=
T Consensus 110 ~Y~~~f~~~lGf~PypG 126 (217)
T PRK14165 110 GYKIQFEEKLGFIPYPG 126 (217)
T ss_pred HHHHHHHHHhCCcCCCC
Confidence 35778899999999963
No 14
>PF04328 DUF466: Protein of unknown function (DUF466); InterPro: IPR007423 This is a small bacterial protein of unknown function.
Probab=21.87 E-value=74 Score=20.40 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHhhccchhHHHH
Q 037449 39 RVHFVRTVIREVAGFAPYEKRI 60 (98)
Q Consensus 39 r~kfVr~vIrEV~GfaPYEkr~ 60 (98)
-.+-|+..+++++|..-||+=+
T Consensus 8 ~~~~~~~~~r~l~G~~~Ye~Yv 29 (65)
T PF04328_consen 8 AWRRVRWYARLLVGEPDYERYV 29 (65)
T ss_pred HHHHHHHHHHHhcCcHHHHHHH
Confidence 3456889999999999999854
No 15
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.50 E-value=98 Score=26.65 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.2
Q ss_pred HHHHHHHhhcchhHHHHHHHHhhhhh
Q 037449 58 KRITELLKVGKDKRALKVAKRKLGTH 83 (98)
Q Consensus 58 kr~~ELlk~skdKrAlKf~KKrlGth 83 (98)
.+.||||++.+-..|.-|++|-+++-
T Consensus 196 QefIELi~~~~~~~Ai~~akk~f~~~ 221 (389)
T KOG0396|consen 196 QEFIELIKVDNYDKAIAFAKKHFAPW 221 (389)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 35789999999999999999977653
No 16
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=20.32 E-value=57 Score=25.96 Aligned_cols=15 Identities=47% Similarity=0.811 Sum_probs=13.1
Q ss_pred HHHHHHhhccchhHH
Q 037449 44 RTVIREVAGFAPYEK 58 (98)
Q Consensus 44 r~vIrEV~GfaPYEk 58 (98)
+..++|..||.||.-
T Consensus 110 ~~qf~ekLGf~PyPG 124 (214)
T COG1339 110 RRQFREKLGFDPYPG 124 (214)
T ss_pred HHHHHHHhCCCCCCC
Confidence 678899999999963
Done!