Query 037449
Match_columns 98
No_of_seqs 123 out of 210
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 21:20:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_k 60S ribosomal protein L 100.0 7.3E-56 2.5E-60 312.9 -0.0 97 1-97 1-97 (112)
2 3izc_k 60S ribosomal protein R 100.0 3.8E-55 1.3E-59 304.3 0.4 94 1-97 1-94 (100)
3 4a18_Q RPL36, 60S ribosomal pr 100.0 5E-53 1.7E-57 295.3 8.4 91 7-97 2-98 (104)
4 3qks_C DNA double-strand break 47.6 6.3 0.00021 22.3 0.9 13 53-65 4-16 (34)
5 3r0a_A Putative transcriptiona 38.8 25 0.00085 22.7 2.9 27 43-69 14-40 (123)
6 2oyn_A Hypothetical protein MJ 27.7 26 0.0009 24.9 1.7 18 40-57 26-43 (146)
7 3mxn_A RECQ-mediated genome in 24.8 78 0.0027 22.8 3.8 75 10-93 37-120 (157)
8 1tua_A Hypothetical protein AP 15.8 2.2E+02 0.0074 20.5 4.5 53 42-96 62-129 (191)
9 1xu0_A Prion protein, XLPRP; a 14.6 75 0.0026 22.5 1.7 15 38-52 109-123 (130)
10 1ng7_A Poliovirus 3A-N, genome 13.9 86 0.0029 19.4 1.6 21 59-79 21-41 (60)
No 1
>3iz5_k 60S ribosomal protein L36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_k
Probab=100.00 E-value=7.3e-56 Score=312.93 Aligned_cols=97 Identities=79% Similarity=1.168 Sum_probs=61.0
Q ss_pred CCCCCCCccceeeecCCceeccccCCCCcccccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhh
Q 037449 1 MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKL 80 (98)
Q Consensus 1 m~~~~~~~giavGlnKGhkvtk~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfaPYEkr~~ELlk~skdKrAlKf~KKrl 80 (98)
|++.+|+|||||||||||+||+|++++|||+++|.+|||++||||||+|||||||||+|+||||++|+|||||||+|+||
T Consensus 1 m~~~~~~~~iavGlnKGhkvTk~~~k~r~s~~kg~ltK~tkfVrdiIrEV~GfAPYErR~mELLKvskDKRALKf~KKRl 80 (112)
T 3iz5_k 1 MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKL 80 (112)
T ss_dssp -----------------------------------CTTTSSCSHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHSSCC
T ss_pred CCCCCCCCCeeeecCCCcccCCCCCCCCcccccCCCcchhHHHHHHHHHHhcCchHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 67777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhc
Q 037449 81 GTHKRAKKKREIYRISF 97 (98)
Q Consensus 81 Gth~RAKrK~eel~~~~ 97 (98)
|||+|||+|+|||+|+.
T Consensus 81 Gth~RAKrKreel~~vl 97 (112)
T 3iz5_k 81 GTHKRAKKKREEMSSVL 97 (112)
T ss_dssp SHHHHHHHHHTSSCCCH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999999999874
No 2
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=100.00 E-value=3.8e-55 Score=304.30 Aligned_cols=94 Identities=44% Similarity=0.703 Sum_probs=70.0
Q ss_pred CCCCCCCccceeeecCCceeccccCCCCcccccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhh
Q 037449 1 MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKL 80 (98)
Q Consensus 1 m~~~~~~~giavGlnKGhkvtk~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfaPYEkr~~ELlk~skdKrAlKf~KKrl 80 (98)
||+ +|||||||||||+||+|+++||||+++|.+|||++||||||+|||||||||+|+||||++|+|||||||+|+||
T Consensus 1 m~~---~~~iavGlnKGhkvtk~~~k~r~s~~kg~~tK~tkfVrdiIrEV~GfaPYErr~mELLkvskdKrAlKf~KKRl 77 (100)
T 3izc_k 1 MTV---KTGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRL 77 (100)
T ss_dssp --------------------------CCCCSSCSHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHTSCCSHHHHHHHH
T ss_pred CCC---ccceeeeccCCcccccCCCCCCcccccCCCCchhHHHHHHHHHHhcCchhHHHHHHHHHhcchHHHHHHHHHHh
Confidence 565 48999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhc
Q 037449 81 GTHKRAKKKREIYRISF 97 (98)
Q Consensus 81 Gth~RAKrK~eel~~~~ 97 (98)
|||+|||+|+|||+|+.
T Consensus 78 Gth~RAKrKreel~~vl 94 (100)
T 3izc_k 78 GSFTRAKAKVEEMNNII 94 (100)
T ss_dssp HHHSCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999999999974
No 3
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=100.00 E-value=5e-53 Score=295.34 Aligned_cols=91 Identities=54% Similarity=0.845 Sum_probs=89.0
Q ss_pred CccceeeecCCceec---cccCCCCcccccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcc---hhHHHHHHHHhh
Q 037449 7 NTGLFVGLNKGYIVT---KKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGK---DKRALKVAKRKL 80 (98)
Q Consensus 7 ~~giavGlnKGhkvt---k~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfaPYEkr~~ELlk~sk---dKrAlKf~KKrl 80 (98)
++||||||||||+|| +|+++||||+++|.+|||++||||||+|||||||||+|+||||++|+ |||||||+|+||
T Consensus 2 ~~~iavGlnKGhkvT~~~k~~~k~r~s~rkg~ltK~tkfVrdiIrEV~GfaPYErR~mELLKvsk~~~dKRAlKf~KKRl 81 (104)
T 4a18_Q 2 AKGQAVGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRL 81 (104)
T ss_dssp CTTSTTSSSCSCCCCCCCTTTSCCCSTTCCSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred CCCeeeecCCCcccccccccCCCCCcccccCCCcchHHHHHHHHHHHhcCchhHHHHHHHHHcccchhhHHHHHHHHHHh
Confidence 479999999999999 99999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhHHHHHHHHHHhhhc
Q 037449 81 GTHKRAKKKREIYRISF 97 (98)
Q Consensus 81 Gth~RAKrK~eel~~~~ 97 (98)
|||+|||+|+|||+|+.
T Consensus 82 Gth~RAKrKreel~~vl 98 (104)
T 4a18_Q 82 GTHRRAKVKKALLEEAV 98 (104)
T ss_dssp CSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999999999974
No 4
>3qks_C DNA double-strand break repair protein MRE11; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_C* 3qku_C*
Probab=47.59 E-value=6.3 Score=22.29 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=9.4
Q ss_pred cchhHHHHHHHHh
Q 037449 53 FAPYEKRITELLK 65 (98)
Q Consensus 53 faPYEkr~~ELlk 65 (98)
|.|.|.+++||+-
T Consensus 4 Ft~~ElKiI~l~G 16 (34)
T 3qks_C 4 FTEFELKIIDILG 16 (34)
T ss_dssp --CHHHHHHHHC-
T ss_pred ccHHHHHHHHHHc
Confidence 7899999999963
No 5
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=38.79 E-value=25 Score=22.74 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=22.3
Q ss_pred HHHHHHHhhccchhHHHHHHHHhhcch
Q 037449 43 VRTVIREVAGFAPYEKRITELLKVGKD 69 (98)
Q Consensus 43 Vr~vIrEV~GfaPYEkr~~ELlk~skd 69 (98)
+.+++....|+.|.|..++.+|.....
T Consensus 14 ~~~~l~~~~gLt~~e~~il~~L~~~~~ 40 (123)
T 3r0a_A 14 VEDVIKCALNLTKADLNVMKSFLNEPD 40 (123)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCC
Confidence 467788899999999999998875443
No 6
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=27.72 E-value=26 Score=24.94 Aligned_cols=18 Identities=28% Similarity=0.757 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhhccchhH
Q 037449 40 VHFVRTVIREVAGFAPYE 57 (98)
Q Consensus 40 ~kfVr~vIrEV~GfaPYE 57 (98)
....++-++|.+||.||.
T Consensus 26 l~~Y~~qf~~~LGF~PfP 43 (146)
T 2oyn_A 26 LPPYKEIFKKILGFEPYE 43 (146)
T ss_dssp SHHHHHHHHHHHSSCCCS
T ss_pred CHHHHHHHHHHhCCcCCC
Confidence 345788899999999996
No 7
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=24.76 E-value=78 Score=22.79 Aligned_cols=75 Identities=20% Similarity=0.169 Sum_probs=42.0
Q ss_pred ceeeecCCceeccccCCCCccccc---------CCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhh
Q 037449 10 LFVGLNKGYIVTKKELQPRSADRK---------GKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKL 80 (98)
Q Consensus 10 iavGlnKGhkvtk~~~k~r~s~~k---------g~~tkr~kfVr~vIrEV~GfaPYEkr~~ELlk~skdKrAlKf~KKrl 80 (98)
..++-=||+.+|-. .+.+.++-+ |...=-+.|..+|+.+..||+|-|-.. ++ +|....+-++
T Consensus 37 ~~~~kVKafI~tl~-~~l~~~~~~W~l~a~IsDGS~~LdV~f~~~VLt~lIGfS~~E~~~---lk--kdp~~~~~l~--- 107 (157)
T 3mxn_A 37 VTTVKVKAFIVTLT-GNLSSSGGIWSITAKVSDGTAYLDVDFVDEILTSLIGFSVPEMKQ---SK--KDPLQYQKFL--- 107 (157)
T ss_dssp CEEEEEEEEEEEEC-SCCBCGGGSCBCEEEEECSSCEEEEEECHHHHHHHHSCCHHHHHH---HT--TSHHHHHHHH---
T ss_pred ceEEEEEEEEEEec-cceeecCCEEEEEEEEeCCceeEEEEeeHHHHHhhhCCCHHHHHH---Hh--hCHHHHHHHH---
Confidence 35566688887632 222222211 222234678999999999999999543 23 5553333332
Q ss_pred hhhHHHHHHHHHH
Q 037449 81 GTHKRAKKKREIY 93 (98)
Q Consensus 81 Gth~RAKrK~eel 93 (98)
-+.++++++...|
T Consensus 108 e~L~~~Q~~L~dl 120 (157)
T 3mxn_A 108 EGLQKCQRDLIDL 120 (157)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 3455566655443
No 8
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=15.83 E-value=2.2e+02 Score=20.54 Aligned_cols=53 Identities=26% Similarity=0.419 Sum_probs=34.2
Q ss_pred HHHHHHHHh-hccchhHHHHHHHHhh-------------cchhHHHHHHHHhh-hhhHHHHHHHHHHhhh
Q 037449 42 FVRTVIREV-AGFAPYEKRITELLKV-------------GKDKRALKVAKRKL-GTHKRAKKKREIYRIS 96 (98)
Q Consensus 42 fVr~vIrEV-~GfaPYEkr~~ELlk~-------------skdKrAlKf~KKrl-Gth~RAKrK~eel~~~ 96 (98)
-++|+|.++ .||.|= .++.||.. ...+..+..++-|+ |---+..+-.|+++.+
T Consensus 62 KA~dlI~ai~rgf~~e--~A~~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~ 129 (191)
T 1tua_A 62 KAAEVVKAISLGFPPE--KAFRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDT 129 (191)
T ss_dssp HHHHHHHHHHHTCCHH--HHGGGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHH--HhhhcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCc
Confidence 468888887 689873 35555541 11223344555565 8888888999988765
No 9
>1xu0_A Prion protein, XLPRP; amphibian, polymorphism, glycoprotein, membrane protein; NMR {Xenopus laevis} SCOP: d.6.1.1
Probab=14.58 E-value=75 Score=22.45 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=13.1
Q ss_pred chhHHHHHHHHHhhc
Q 037449 38 KRVHFVRTVIREVAG 52 (98)
Q Consensus 38 kr~kfVr~vIrEV~G 52 (98)
-+++.++.||+|+|-
T Consensus 109 l~~rvl~r~i~emC~ 123 (130)
T 1xu0_A 109 LDTTVKSQIIREMCI 123 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 488999999999993
No 10
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=13.85 E-value=86 Score=19.38 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=17.6
Q ss_pred HHHHHHhhcchhHHHHHHHHh
Q 037449 59 RITELLKVGKDKRALKVAKRK 79 (98)
Q Consensus 59 r~~ELlk~skdKrAlKf~KKr 79 (98)
.+++||+..++-....|+++.
T Consensus 21 aI~DLLksvds~eV~~YC~~k 41 (60)
T 1ng7_A 21 CINDLLQAVDSQEVRDYCEKK 41 (60)
T ss_dssp TTHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHC
Confidence 388999998888889998874
Done!