Query 037449
Match_columns 98
No_of_seqs 123 out of 210
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 21:20:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037449.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037449hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g47a1 g.39.1.3 (A:1-35) Pinc 38.3 3.2 0.00023 22.3 0.1 8 51-58 15-22 (35)
2 d1tuaa1 d.51.1.1 (A:1-84) Hypo 28.2 12 0.00089 22.4 1.6 24 39-64 58-82 (84)
3 d1sfxa_ a.4.5.50 (A:) Hypothet 27.9 23 0.0017 20.9 2.9 16 51-66 16-31 (109)
4 d2bj7a1 a.43.1.3 (A:1-50) Nick 26.4 16 0.0012 20.4 1.7 16 36-51 27-42 (50)
5 d2hzaa1 a.43.1.3 (A:1-48) Nick 23.5 21 0.0015 19.6 1.9 16 36-51 25-40 (48)
6 d1oywa2 c.37.1.19 (A:1-206) Re 21.8 34 0.0025 21.3 3.0 27 42-68 12-41 (206)
7 d2hkja2 d.14.1.3 (A:307-470) T 21.4 43 0.0031 22.7 3.6 25 70-94 135-159 (164)
8 d3ctaa2 b.43.5.2 (A:90-220) CT 19.2 18 0.0013 23.7 1.1 16 43-58 26-41 (131)
9 d2vbua1 b.43.5.2 (A:2-132) CTP 18.3 20 0.0015 23.4 1.2 15 43-57 26-40 (131)
10 d1yioa1 a.4.6.2 (A:131-200) Re 13.1 80 0.0058 17.3 2.8 25 45-69 4-29 (70)
No 1
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.33 E-value=3.2 Score=22.28 Aligned_cols=8 Identities=75% Similarity=1.194 Sum_probs=6.8
Q ss_pred hccchhHH
Q 037449 51 AGFAPYEK 58 (98)
Q Consensus 51 ~GfaPYEk 58 (98)
.||+|.|+
T Consensus 15 ~gF~p~Ek 22 (35)
T d1g47a1 15 GGFAPAEK 22 (35)
T ss_dssp CBCCSTTT
T ss_pred cCCCchHH
Confidence 48999996
No 2
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=28.23 E-value=12 Score=22.35 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHh-hccchhHHHHHHHH
Q 037449 39 RVHFVRTVIREV-AGFAPYEKRITELL 64 (98)
Q Consensus 39 r~kfVr~vIrEV-~GfaPYEkr~~ELl 64 (98)
-..-++|+|+++ -||+|=. ++.||
T Consensus 58 a~~~a~~iI~aI~rGf~Pe~--a~~ll 82 (84)
T d1tuaa1 58 NLMKAAEVVKAISLGFPPEK--AFRLL 82 (84)
T ss_dssp HHHHHHHHHHHHHHTCCHHH--HGGGG
T ss_pred HHHHHHHHHHHHhCCCChHH--HHHhc
Confidence 455689999999 4999953 55554
No 3
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=27.87 E-value=23 Score=20.93 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=13.9
Q ss_pred hccchhHHHHHHHHhh
Q 037449 51 AGFAPYEKRITELLKV 66 (98)
Q Consensus 51 ~GfaPYEkr~~ELlk~ 66 (98)
.||.|+|.+++..|-.
T Consensus 16 lGlt~~e~~v~~~L~~ 31 (109)
T d1sfxa_ 16 LSFKPSDVRIYSLLLE 31 (109)
T ss_dssp TCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999887753
No 4
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=26.43 E-value=16 Score=20.36 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=13.2
Q ss_pred CCchhHHHHHHHHHhh
Q 037449 36 TSKRVHFVRTVIREVA 51 (98)
Q Consensus 36 ~tkr~kfVr~vIrEV~ 51 (98)
-+-|..+|||+||+..
T Consensus 27 y~nRSEaIRdliR~~l 42 (50)
T d2bj7a1 27 YENRSEAIRDLIRDFI 42 (50)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 4569999999999853
No 5
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.47 E-value=21 Score=19.63 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.3
Q ss_pred CCchhHHHHHHHHHhh
Q 037449 36 TSKRVHFVRTVIREVA 51 (98)
Q Consensus 36 ~tkr~kfVr~vIrEV~ 51 (98)
-+-|..+|||+||+..
T Consensus 25 y~nRSEaIRdliR~~l 40 (48)
T d2hzaa1 25 YNNRSEAIRDILRSAL 40 (48)
T ss_dssp CCSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 5669999999999853
No 6
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=21.79 E-value=34 Score=21.33 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=21.1
Q ss_pred HHHHHHHHhhcc---chhHHHHHHHHhhcc
Q 037449 42 FVRTVIREVAGF---APYEKRITELLKVGK 68 (98)
Q Consensus 42 fVr~vIrEV~Gf---aPYEkr~~ELlk~sk 68 (98)
-++++++|..|| -||-..+++.+-.++
T Consensus 12 ~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~ 41 (206)
T d1oywa2 12 GAKQVLQETFGYQQFRPGQEEIIDTVLSGR 41 (206)
T ss_dssp HHHHHHHHTTCCSSCCTTHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCC
Confidence 378999999865 599989988876554
No 7
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=21.41 E-value=43 Score=22.74 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=21.4
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHh
Q 037449 70 KRALKVAKRKLGTHKRAKKKREIYR 94 (98)
Q Consensus 70 KrAlKf~KKrlGth~RAKrK~eel~ 94 (98)
+.||..+=++|.+|++-++|.++..
T Consensus 135 rlAl~~~~R~L~~~l~kk~k~~~~~ 159 (164)
T d2hkja2 135 KNALMEVARKLKQYLSEKRKEQEAK 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999998888877754
No 8
>d3ctaa2 b.43.5.2 (A:90-220) CTP-dependent riboflavin kinase, Rfk {Thermoplasma acidophilum [TaxId: 2303]}
Probab=19.25 E-value=18 Score=23.67 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=12.7
Q ss_pred HHHHHHHhhccchhHH
Q 037449 43 VRTVIREVAGFAPYEK 58 (98)
Q Consensus 43 Vr~vIrEV~GfaPYEk 58 (98)
.++-++|.+||.||.=
T Consensus 26 Y~~qF~~~LG~~P~PG 41 (131)
T d3ctaa2 26 YIIQFQEKLGIIPYLG 41 (131)
T ss_dssp CHHHHHHHSCSCCCC-
T ss_pred HHHHHHHHhCCCCCCC
Confidence 3667799999999963
No 9
>d2vbua1 b.43.5.2 (A:2-132) CTP-dependent riboflavin kinase, Rfk {Methanococcus jannaschii [TaxId: 2190]}
Probab=18.28 E-value=20 Score=23.36 Aligned_cols=15 Identities=33% Similarity=0.977 Sum_probs=13.0
Q ss_pred HHHHHHHhhccchhH
Q 037449 43 VRTVIREVAGFAPYE 57 (98)
Q Consensus 43 Vr~vIrEV~GfaPYE 57 (98)
.++-++|..||.||.
T Consensus 26 Y~~qF~~~LG~~P~P 40 (131)
T d2vbua1 26 YKEIFKKILGFEPYE 40 (131)
T ss_dssp HHHHHHHHHSSCCCS
T ss_pred HHHHHHHHhCCCCCC
Confidence 577889999999995
No 10
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=13.09 E-value=80 Score=17.25 Aligned_cols=25 Identities=12% Similarity=0.216 Sum_probs=18.3
Q ss_pred HHHHHh-hccchhHHHHHHHHhhcch
Q 037449 45 TVIREV-AGFAPYEKRITELLKVGKD 69 (98)
Q Consensus 45 ~vIrEV-~GfaPYEkr~~ELlk~skd 69 (98)
+-+.+. .+|+|=|..++.+|-.|..
T Consensus 4 ~~~~~~~~~LT~rE~~vl~~l~~G~s 29 (70)
T d1yioa1 4 DQLEQLFSSLTGREQQVLQLTIRGLM 29 (70)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTTTCC
T ss_pred HHHHHHHccCCHHHHHHHHHHHcCCC
Confidence 344455 4899999999999886653
Done!