BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037450
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 159 NKSNVTRLPE-------KRIESEKDCAICLDGIVVGQLASCTPCDHVFHKRCIDFWLEKS 211
+K ++ LPE + E C IC V G +A+ PC H FHK C+ WL+KS
Sbjct: 18 SKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS 77
Query: 212 RSCPLCRNDLP 222
+CP+CR P
Sbjct: 78 GTCPVCRCMFP 88
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 168 EKRIESEKDCAICLDGIVVGQLASCTPCDHVFHKRCIDFWLEKSRSCPLCRNDL 221
E+ + S +C +C + +G+ PC+H+FH CI WLE+ SCP+CR L
Sbjct: 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 50.8 bits (120), Expect = 6e-07, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 169 KRIESEKDCAICLDGIVVGQLASCTPCDHVFHKRCIDFWLEKSRSCPLCR 218
K++ E++C IC+DG + PC H F ++CID W ++ R+CP+CR
Sbjct: 10 KQLTDEEECCICMDG----RADLILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 167 PEKRIESEKDCAICLDGIVVGQLASCTPCDHVFHKRCIDFWLEKSRSCPLCRND 220
P + C +C+ QL PC+H FH +C+D WL+ +R+CP+CR D
Sbjct: 16 PNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRAD 69
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 48.5 bits (114), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 176 DCAICLDGIVVGQLASCTP-CDHVFHKRCIDFWLEKSRSCPLCR 218
+CA+CL + G+ A P C H FH C+D WL +CPLCR
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 177 CAICLDGIVVGQLASCTPCDHVFHKRCIDFWLEKSRSCPLCRNDLPAS 224
C ICL + G+ PC H+FH+ C+D WL ++ CP+CR D+ A
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 45.8 bits (107), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 169 KRIESEKDCAICLDGIVVGQLASCTPCDHVFHKRCIDFWLEKSRSCPLC 217
K + + CA+CL+ PC H FH++C+ WLE + CPLC
Sbjct: 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 173 SEKDCAICLDGIVVGQL-ASCTPCDHVFHKRCIDFWLEKSRSCPLC 217
S+++C ICL+ I ++ A PC H+ H+ C + L++ CPLC
Sbjct: 4 SQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 177 CAICLDG----IVVGQLASCTPCDHVFHKRCIDFWLEKSRSCPLCRNDL 221
C IC+DG + G+L T C HVF +C+ L+ + +CP CR +
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 177 CAICLDG----IVVGQLASCTPCDHVFHKRCIDFWLEKSRSCPLCRNDL 221
C IC+DG + G+L T C HVF +C+ L+ + +CP CR +
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 177 CAICLDGIVVGQL-ASCTPCDHVFHKRCIDFWLEKSRSCPLC 217
C ICL+ I ++ A PC H+ H+ C + L++ CPLC
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 171 IESEKDCAICLDGIVVGQLASCTPCDHVFHKRCIDFWLEKSRSCPLCRNDLPA 223
+E+E C IC + + A C H F CI+ W+++ CP+CR D+ +
Sbjct: 50 LENELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 171 IESEKDCAICLDGIVVGQLASCTPCDHVFHKRCIDFWLEKSRSCPLCRNDLPA 223
+E+E C IC + + +C H F CI+ W+++ CP+CR D+ +
Sbjct: 50 LENELQCIICSEYFIEAVTLNCA---HSFCSYCINEWMKRKIECPICRKDIKS 99
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 171 IESEKDCAICLDGIVVGQLASCTPCDHVFHKRCIDFWLEKSRSCPLCRNDLPA 223
+E+E C IC + + A C H F CI+ W+++ CP+CR D+ +
Sbjct: 61 LENELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 110
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 176 DCAICLDG----IVVGQLASCTPCDHVFHKRCIDFWLEKSRSCPLCRNDL 221
C IC+DG + G+L T C HVF +C+ L+ + +CP CR +
Sbjct: 17 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 176 DCAICLDG----IVVGQLASCTPCDHVFHKRCIDFWLEKSRSCPLCRNDL 221
C IC+DG + G+L T C HVF +C+ L+ + +CP CR +
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 176 DCAICLDG----IVVGQLASCTPCDHVFHKRCIDFWLEKSRSCPLCRNDL 221
C IC+DG + G+L T C HVF +C+ L+ + +CP CR +
Sbjct: 74 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 151 MDLR-MAINNKSNVTRLPEKRIESEKDCAICLDGIVVGQLASCTPCDHVFHKRCIDFWLE 209
MDL + + NV +K +E C ICL+ ++ + S T CDH+F K C+ L
Sbjct: 1 MDLSALRVEEVQNVINAMQKILE----CPICLE--LIKEPVS-TKCDHIFCKFCMLKLLN 53
Query: 210 KSRS---CPLCRNDL 221
+ + CPLC+ND+
Sbjct: 54 QKKGPSQCPLCKNDI 68
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 34.7 bits (78), Expect = 0.045, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 177 CAICLDGIVVGQLASCTPCDHVFHKRCIDFWLEKSRSCPLCR 218
C ICL+ + PC H F CI W+ ++ +CPLC+
Sbjct: 8 CPICLED--PSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 149 IAMDLRMAINNKSNVTRLPEKRIESEKDCAICLDGIVVGQLASCTPCDHVFHKR-----C 203
+A LR+ ++P R+ + C IC G++ G++A P +R
Sbjct: 9 MAESLRLTCLACGQANKVPSDRLAAGPKCGICGAGLITGKVAGIDPAILARAERDDLPLL 68
Query: 204 IDFWLEKSRSCPLCRNDLP 222
+DFW + C CR P
Sbjct: 69 VDFW---APWCGPCRQMAP 84
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 194 PCDHVFHKRCIDFWLEKSRSCPLCRNDL 221
C+H FH C+ W++++ CPLC+ D
Sbjct: 47 ECNHSFHNCCMSLWVKQNNRCPLCQQDW 74
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 33.5 bits (75), Expect = 0.11, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 176 DCAICLDGIVVGQLASCTPCDHVFHKRCID--FWLEKSRSCPLCRNDLP 222
+CAICL V PC HVF C+ WL K C LCR ++P
Sbjct: 17 ECAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGK--RCALCRQEIP 60
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 31.6 bits (70), Expect = 0.36, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 172 ESEKDCAICLDGIVVGQLASCTPCDHVFHKRCI 204
++E +CA+C DG G+L C C FH C+
Sbjct: 6 KNEDECAVCRDG---GELICCDGCPRAFHLACL 35
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 31.6 bits (70), Expect = 0.37, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 169 KRIESEKDCAICLDGIVVGQLASCTPCDHVFHKRCIDFW---LEKSRSCPLC 217
+ ++ E C++CL+ + + C H F K CI W LE+ CP+C
Sbjct: 10 ENLQVEASCSVCLEYL---KEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 31.2 bits (69), Expect = 0.47, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 172 ESEKDCAICLDGIVVGQLASCTPCDHVFHKRCI 204
++E +CA+C DG G+L C C FH C+
Sbjct: 3 KNEDECAVCRDG---GELICCDGCPRAFHLACL 32
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 31.2 bits (69), Expect = 0.48, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 177 CAICLDGIVVGQLASCTPCDHVFHKRCIDFWLEKSR----SCPLCRND 220
C +C G G++ C C +H C+D +EK+ SCP C +
Sbjct: 14 CEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58
>pdb|1ZBX|A Chain A, Crystal Structure Of A Orc1p-Sir1p Complex
Length = 219
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 93 SDKGLHLLRLD-------ASGGMPIMFPQSVRIYTLTKLV-VCVLDYFKRLRTNPSNRFR 144
S G+ L R D A+G + Q +R+ TL +V + L Y + NP +R
Sbjct: 44 SSDGIKLGRGDSVVMHNEAAGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYR 103
Query: 145 KFVPIAMDLRMAIN 158
+F P A L +N
Sbjct: 104 QFNPDANILNRPLN 117
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 195 CDHVFHKRCIDFWLEKSRSCPL 216
C+H FH CI WL+ + CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 195 CDHVFHKRCIDFWLEKSRSCPL 216
C+H FH CI WL+ + CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|1ZHI|A Chain A, Complex Of The S. Cerevisiae Orc1 And Sir1 Interacting
Domains
Length = 225
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 93 SDKGLHLLRLD-------ASGGMPIMFPQSVRIYTLTKLV-VCVLDYFKRLRTNPSNRFR 144
S G+ L R D A+G + Q +R+ TL +V + L Y + NP +R
Sbjct: 50 SSDGIKLGRGDSVVMHNEAAGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYR 109
Query: 145 KFVPIAMDLRMAIN 158
+F P A L +N
Sbjct: 110 QFNPDANILNRPLN 123
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 195 CDHVFHKRCIDFWLEKSRSCPL 216
C+H FH CI WL+ + CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|1BLF|A Chain A, Structure Of Diferric Bovine Lactoferrin At 2.8 Angstroms
Resolution
Length = 689
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 148 PIAMDLRMAINNKSNVTRLPEKRIESEKDCAICLD---------GIVVGQLASCTPCDHV 198
P L +A+ K+N L ++ +K C +D G++V Q SC D
Sbjct: 429 PTEGYLAVAVVKKAN-EGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCA-FDEF 486
Query: 199 FHKRCIDFWLEKSRSCPLCRND 220
F + C KSR C LC D
Sbjct: 487 FSQSCAPGADPKSRLCALCAGD 508
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 195 CDHVFHKRCIDFWLEKSRSCPL 216
C+H FH CI WL+ + CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|1M4Z|A Chain A, Crystal Structure Of The N-terminal Bah Domain Of Orc1p
pdb|1M4Z|B Chain B, Crystal Structure Of The N-terminal Bah Domain Of Orc1p
Length = 238
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 93 SDKGLHLLRLD-------ASGGMPIMFPQSVRIYTLTKLV-VCVLDYFKRLRTNPSNRFR 144
S G+ L R D A+G + Q +R+ TL +V + L Y + NP +R
Sbjct: 47 SSDGIKLGRGDSVVMHNEAAGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYR 106
Query: 145 KFVPIAMDLRMAIN 158
+F P A L +N
Sbjct: 107 QFNPDANILNRPLN 120
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 195 CDHVFHKRCIDFWLEKSRSCPL 216
C+H FH CI WL+ + CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 195 CDHVFHKRCIDFWLEKSRSCPL 216
C+H FH CI WL+ + CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 172 ESEKDCAICLDGIVVGQLASCTPCDHV-FHKRCIDFWLEKSRSCPLCR 218
E+ KDC +C +G V L PC H C+ ++ + CP+CR
Sbjct: 13 ENSKDCVVCQNGTVNWVL---LPCRHTCLCDGCVKYF----QQCPMCR 53
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 195 CDHVFHKRCIDFWLEKSRSCPL 216
C+H FH CI WL+ + CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 195 CDHVFHKRCIDFWLEKSRSCPLC 217
C H F K CI +LE S+ CP+C
Sbjct: 34 CLHSFCKTCIVRYLETSKYCPIC 56
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 173 SEKDCAICLDGIVVGQLASCTPCDHVFHKRCIDFWLEK-SRSCPLCR 218
SE C IC++ I+V + PC+H K C +EK S CP CR
Sbjct: 14 SECQCGICME-ILVEPVT--LPCNHTLCKPCFQSTVEKASLCCPFCR 57
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 195 CDHVFHKRCIDFWLEKSRSCPLC 217
C H F K CI +LE S+ CP+C
Sbjct: 34 CLHSFCKTCIVRYLETSKYCPIC 56
>pdb|1NKX|A Chain A, Crystal Structure Of A Proteolytically Generated
Functional Monoferric C-Lobe Of Bovine Lactoferrin At
1.9a Resolution
pdb|2ALU|A Chain A, Detection Of New Binding Site In The C-Terminal Lobe Of
Lactoferrin:crystal Structure Of The Complex Formed
Between Bovine Lactoferrin And A Tetrasaccharide At 2.1a
Resolution
pdb|2AYS|A Chain A, A Conserved Non-Metallic Binding Site In The C-Terminal
Lobe Of Lactoferrin: Structure Of The Complex Of
C-Terminal Lobe Of Bovine Lactoferrin With N-Acetyl
Galactosamine At 1.86 A Resolution
pdb|2Q8J|A Chain A, Crystal Structure Of The Complex Of C-Lobe Of Bovine
Lactoferrin With Mannitol And Mannose At 2.7 A
Resolution
pdb|2QJE|A Chain A, Crystal Structure Of The Complex Of Bovine C-Lobe With
Amygdalin At 2.3a Resolution
Length = 348
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 148 PIAMDLRMAINNKSNVTRLPEKRIESEKDCAICLD---------GIVVGQLASCTPCDHV 198
P L +A+ K+N L ++ +K C +D G++V Q SC D
Sbjct: 88 PTEGYLAVAVVKKAN-EGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAF-DEF 145
Query: 199 FHKRCIDFWLEKSRSCPLCRND 220
F + C KSR C LC D
Sbjct: 146 FSQSCAPGADPKSRLCALCAGD 167
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 195 CDHVFHKRCIDFWLEKSRSCPLC 217
C H F K CI +LE S+ CP+C
Sbjct: 30 CLHSFCKTCIVRYLETSKYCPIC 52
>pdb|1SDX|A Chain A, Crystal Structure Of The Zinc Saturated C-Terminal Half Of
Bovine Lactoferrin At 2.0 A Resolution Reveals Two
Additional Zinc Binding Sites
pdb|3TOD|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With 1- Butyl-1h-Pyrazole-5-Carboxylic Acid At
1.38 A Resolution
pdb|3U72|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Isoniazid At 2.2 A Resolution
pdb|3U8Q|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Phenyl-Propanolamine At 1.97 A Resolution
pdb|3UGW|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Deoxycytidine At 1.87 A Resolution
pdb|3UK4|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With 1,2, 5-Pentanetriol At 1.98 A Resolution
pdb|3USD|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Imidazol (1,2 A) Pyridine3-Yl-Acitic Acid
At 2.4 A Resolution
pdb|3V5A|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Gamma Amino Butyric Acid At 1.44 A
Resolution
pdb|3VDF|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Diaminopimelic Acid At 1.46 A Resolution
pdb|4DIG|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With N- Acetylmuramyl L-Alanyl D-Isoglutamine
At 1.8 A Resolution
pdb|4DXU|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Aminocaproic Acid At 1.46 A Resolution
pdb|4FIM|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Celecoxib Acid At 1.80 A Resolution
pdb|4FJP|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Naproxen At 1.68 A Resolution
pdb|4FOR|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Flurbiprofen At 1.58 A Resolution
pdb|4G2Z|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Mefenamic Acid At 1.90 A Resolution
pdb|4GRK|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Ketorolac At 1.68 A Resolution
Length = 335
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 148 PIAMDLRMAINNKSNVTRLPEKRIESEKDCAICLD---------GIVVGQLASCTPCDHV 198
P L +A+ K+N L ++ +K C +D G++V Q SC D
Sbjct: 88 PTEGYLAVAVVKKAN-EGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAF-DEF 145
Query: 199 FHKRCIDFWLEKSRSCPLCRND 220
F + C KSR C LC D
Sbjct: 146 FSQSCAPGADPKSRLCALCAGD 167
>pdb|2B65|A Chain A, Crystal Structure Of The Complex Of C-Lobe Of Bovine
Lactoferrin With Maltose At 1.5a Resolution
pdb|2FA7|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoferrin
C-Lobe With A Pentasaccharide At 2.38 A Resolution
pdb|2DOJ|A Chain A, Crystal Structure Of The Complex Of C-Terminal Lobe Of
Bovine Lactoferrin With Adenosine At 2.4 A Resolution
pdb|2DP8|A Chain A, Carbohydrate Recognition By Lactoferrin: Crystal Structure
Of The Complex Of C-Terminal Lobe Of Bovine Lactoferrin
With Trisaccharide At 2.5 A Resolution
pdb|2G93|A Chain A, Ligand Recognition Site In C-Lobe Of Lactoferrin: Crystal
Structure Of The Complex Of C-Lobe Of Bovine Lactoferrin
With Methyl Alpha-D- Mannopyranoside At 1.9 A Resolution
pdb|2H4I|A Chain A, Crystal Structure Of The Complex Of Proteolytically
Produced C- Terminal Half Of Bovine Lactoferrin With
Lactose At 2.55 A Resolution
pdb|2HCA|A Chain A, Crystal Structure Of Bovine Lactoferrin C-Lobe Liganded
With Glucose At 2.8 A Resolution
pdb|2DQV|A Chain A, Structure Of The C-Terminal Lobe Of Bovine Lactoferrin In
Complex With Galactose At 2.7 A Resolution
pdb|2DS9|A Chain A, Structure Of The Complex Of C-Terminal Lobe Of Bovine
Lactoferrin With Mannose At 2.8 A Resolution
pdb|2DSF|A Chain A, Structure Of The Complex Of C-Terminal Lobe Of Bovine
Lactoferrin With Xylose At 2.8a Resolution
pdb|2DVC|A Chain A, Structure Of The Bovine Lactoferrin C-Lobe Complex With
Sucrose At 3.0 A Resolution
pdb|2DWA|A Chain A, Structure Of The Complex Of Lactoferrin C-Terminal Half
With Fucose At 2.07 A Resolution
pdb|2DWH|A Chain A, Crystal Structure Of N-Acetylglucosamine Complex Of Bovine
Lactoferrin C-Lobe At 2.8 A Resolution
pdb|2DWI|A Chain A, Crystal Structure Of The Complex Formed Between C-Terminal
Half Of Bovine Lactoferrin And Cellobiose At 2.2 A
Resolution
pdb|2DWJ|A Chain A, Structure Of The Complex Of C-Terminal Lobe Of Bovine
Lactoferrin With Raffinose At 2.3 A Resolution
pdb|2DXR|A Chain A, Crystal Structure Of The Complex Formed Between C-Terminal
Half Of Bovine Lactoferrin And Sorbitol At 2.85 A
Resolution
pdb|2DXY|A Chain A, Structure Of The Complex Of C-Terminal Lobe Of Bovine
Lactoferrin With Trehalose At 2.0 A Resolution
pdb|2DYX|A Chain A, Structure Of The Complex Of Lactoferrin C-lobe With
Melibiose At 2.0 A Resolution
pdb|2E0S|A Chain A, Carbohydrate Recognition Of C-Terminal Half Of
Lactoferrin: Crystal Structure Of The Complex Of C-Lobe
With Rhamnose At 2.15 A Resolution
pdb|2E1S|A Chain A, Crystal Structure Of The Complex Of C-Terminal Half Of
Bovine Lactoferrin And Arabinose At 2.7 A Resolution
pdb|2NWJ|A Chain A, Structure Of The Complex Of C-Terminal Lobe Of Bovine
Lactoferrin With Disaccharide At 1.75 A Resolution
pdb|2NUV|A Chain A, Crystal Structure Of The Complex Of C-Terminal Lobe Of
Bovine Lactoferrin With Atenolol At 2.25 A Resolution
pdb|2O1L|A Chain A, Structure Of A Complex Of C-terminal Lobe Of Bovine
Lactoferrin With Disaccharide At 1.97 A Resolution
pdb|2O51|A Chain A, Crystal Structure Of Bovine C-Lobe With Fructose At 3.0 A
Resolution
pdb|2OCU|A Chain A, Structure Of The Complex Of C-Terminal Lobe Of Bovine
Lactoferrin With N-(4-Hydroxyphenyl) Acetamide At 2.38 A
Resolution
pdb|2PX1|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoferrin
C-Lobe With Ribose At 2.5 A Resolution
pdb|2R71|A Chain A, Crystal Structure Of The Complex Of Bovine C-lobe With
Inositol At 2.1a Resolution
pdb|2R9J|A Chain A, Ligand Recognition In C-Lobe: The Crystal Structure Of The
Complex Of Lactoferrin C-Lobe With Nicotinamide At 2.5 A
Resolution
pdb|3CFL|A Chain A, Crystal Structure Of The Complex Formed Between C-lobe Of
Bovine Lactoferrin And
5-chloro-6'-methyl-3-[4-(methylsulfonyl)phenyl]-2,3'-
Bipyridine At 2.25 A Resolution
pdb|3CI8|A Chain A, Crystal Structure Of The Complex Of C-Lobe Of Lactoferrin
With Vitamin B3 (Niacin) At 2.4 A Resolution
pdb|3CRB|A Chain A, Crystal Structure Of The Complex Of C-Lobe Of Lactoferrin
With 2- Chromenone At 2.6 A Resolution
pdb|2ZMB|A Chain A, Crystal Structure Of The Complex Of C-Terminal Lobe Of
Bovine Lactoferrin With Parecoxib At 2.9 A Resolution
pdb|3E9X|A Chain A, Crystal Structure Of The Complex Of C-lobe Of Lactoferrin
With Nimesulide At 2.7 A Resolution
pdb|3IB2|A Chain A, Structure Of The Complex Of C-Terminal Half (C-Lobe) Of
Bovine Lactoferrin With Alpha-Methyl-4-(2-Methylpropyl)
Benzene Acetic Acid
pdb|3IAZ|A Chain A, Structural Basis Of The Prevention Of Nsaid-induced Damage
Of The Gastrointestinal Tract By C-terminal Half
(c-lobe) Of Bovine Colostrum Protein Lactoferrin:
Binding And Structural Studies Of The C-lobe Complex
With Aspirin
pdb|3IB0|A Chain A, Structural Basis Of The Prevention Of Nsaid-Induced Damage
Of The Gastrointestinal Tract By C-Terminal Half
(C-Lobe) Of Bovine Colostrum Protein Lactoferrin:
Binding And Structural Studies Of C- Lobe Complex With
Diclofenac
pdb|3IB1|A Chain A, Structural Basis Of The Prevention Of Nsaid-Induced Damage
Of The Gastrointestinal Tract By C-Terminal Half
(C-Lobe) Of Bovine Colostrum Protein Lactoferrin:
Binding And Structural Studies Of C- Lobe Complex With
Indomethacin
pdb|3K0V|A Chain A, Removal Of Sugars And Sugars-Like Molecules From The
Solution By C- Lobe Of Lactoferrin: Crystal Structure Of
The Complex Of C-Lobe With
Beta-D-Glucopyranosyl-(1->4)-Beta-D-Galactopyranosyl-(1-
>4)-Alpha-D- Glucopyranose At 1.9 A Resolution
pdb|3KJ7|A Chain A, Crystal Structure Of The Complex Of C-Lobe Of Bovine
Lactoferrin With Dextrin At 1.9 A Resolution
pdb|3MJN|A Chain A, Crystal Structure Of The Complex Of C-Lobe Of Lactoferrin
With Isopropylamino-3-(1-Naphthyloxy)propan-2-Ol At 2.38
A Resolution
pdb|3O97|A Chain A, Crystal Structure Of The Complex Of C-Lobe Of Lactoferrin
With Indole Acetic Acid At 2.68 A Resolution
pdb|3RGY|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Lipopolysaccharide At 2.0 A Resolution
pdb|3SDF|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Lipoteichoic Acid At 2.1 A Resolution
pdb|3TAJ|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Nabumetone At 1.7a Resolution
pdb|3TTR|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Lidocaine At 2.27 A Resolution
pdb|3TUS|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Meta- Hydroxy Benzoic Acid At 2.5 A
Resolution
pdb|4G77|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Tolfenamic Acid At 1.98 A Resolution
pdb|4G8H|A Chain A, Crystal Structure Of C-Lobe Of Bovine Lactoferrin
Complexed With Licofelone At 1.88 A Resolution
Length = 345
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 148 PIAMDLRMAINNKSNVTRLPEKRIESEKDCAICLD---------GIVVGQLASCTPCDHV 198
P L +A+ K+N L ++ +K C +D G++V Q SC D
Sbjct: 88 PTEGYLAVAVVKKAN-EGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAF-DEF 145
Query: 199 FHKRCIDFWLEKSRSCPLCRND 220
F + C KSR C LC D
Sbjct: 146 FSQSCAPGADPKSRLCALCAGD 167
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 28.9 bits (63), Expect = 2.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 169 KRIESEKDCAICLDGIVVGQLASCTPCDH-VFHKRCIDFWLEKSRSCPLCRNDLPAS 224
+R++ E+ C +C+D V PC H V K C R CP+CR+ + +
Sbjct: 19 RRLQEERTCKVCMDKEVS---IVFIPCGHLVVCKDCA----PSLRKCPICRSTIKGT 68
>pdb|2P1S|A Chain A, Crystal Structure Of The C-Terminal Lobe Of Bovine
Lactoferrin Complexed With O-Alpha-D-Glucopyranosyl-(1
3)-Alpha-D- Fructofuranosyl- (2 1)-
Alpha-D-Glucopyranoside At 1.93 A Resolution
Length = 344
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 148 PIAMDLRMAINNKSNVTRLPEKRIESEKDCAICLD---------GIVVGQLASCTPCDHV 198
P L +A+ K+N L ++ +K C +D G++V Q SC D
Sbjct: 88 PTEGYLAVAVVKKAN-EGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAF-DEF 145
Query: 199 FHKRCIDFWLEKSRSCPLCRND 220
F + C KSR C LC D
Sbjct: 146 FSQSCAPGADPKSRLCALCAGD 167
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 28.9 bits (63), Expect = 2.3, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 192 CTPCDHVFHKRCIDFWLEKSRS-----CPLCRND 220
C CD FH C+D L S CP CRND
Sbjct: 23 CDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 56
>pdb|2H3X|A Chain A, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dehydrogenase And Azurin From Alcaligenes
Faecalis (Form 3)
pdb|2H3X|D Chain D, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dehydrogenase And Azurin From Alcaligenes
Faecalis (Form 3)
pdb|2H47|A Chain A, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2H47|D Chain D, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2H47|F Chain F, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2H47|H Chain H, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2IAA|A Chain A, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (form 2)
pdb|2IAA|D Chain D, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (form 2)
Length = 390
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 74 LSNILADEGVTVDANGCFLSDKGLHLLRLDASGGMPIMFPQSVRIYTLTKLVVCVLDYFK 133
L+ A G+ V A G DK +L +GG + PQ RIY + + + + +
Sbjct: 7 LTTAAAMLGLMVLAGGAQAQDKPREVL----TGGHSVSAPQENRIYVMDSVFMHLTESRV 62
Query: 134 RLRTNPSNRFRKFVPIAMDLRMAINN 159
+ + +F VP A + + ++N
Sbjct: 63 HVYDYTNGKFLGMVPTAFNGHVQVSN 88
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 177 CAICLDGIVVGQLASCTPCDHVFHKRCIDFWLE-KSRSCPLCRNDLPAS 224
C IC + + PC H+ C+ W E + + CP CR ++ +
Sbjct: 335 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380
>pdb|1BIY|A Chain A, Structure Of Diferric Buffalo Lactoferrin
Length = 689
Score = 28.5 bits (62), Expect = 3.2, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 148 PIAMDLRMAINNKSNVTRLPEKRIESEKDCAICLD---------GIVVGQLASCTPCDHV 198
P L +A+ K+N L ++ +K C +D G++ Q SC D
Sbjct: 429 PTEGYLAVAVVKKAN-EGLTWNSLKGKKSCHTAVDRTAGWNIPMGLIANQTGSCA-FDEF 486
Query: 199 FHKRCIDFWLEKSRSCPLCRND 220
F + C KSR C LC D
Sbjct: 487 FSQSCAPGADPKSRLCALCAGD 508
>pdb|1CE2|A Chain A, Structure Of Diferric Buffalo Lactoferrin At 2.5a
Resolution
Length = 689
Score = 28.5 bits (62), Expect = 3.2, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 148 PIAMDLRMAINNKSNVTRLPEKRIESEKDCAICLD---------GIVVGQLASCTPCDHV 198
P L +A+ K+N L ++ +K C +D G++ Q SC D
Sbjct: 429 PTEGYLAVAVVKKAN-EGLTWNSLKGKKSCHTAVDRTAGWNIPMGLIANQTGSCA-FDEF 486
Query: 199 FHKRCIDFWLEKSRSCPLCRND 220
F + C KSR C LC D
Sbjct: 487 FSQSCAPGADPKSRLCALCAGD 508
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 177 CAICLDGIVVGQLASCTPCDHVFHKRCIDFWLE-KSRSCPLCRNDLPAS 224
C IC + + PC H+ C+ W E + + CP CR ++ +
Sbjct: 335 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 177 CAICLDGIVVGQLASCTPCDHVFHKRCIDFWLE-KSRSCPLCRNDLPAS 224
C IC + + PC H+ C+ W E + + CP CR ++ +
Sbjct: 337 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 382
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 177 CAICLDGIVVGQLASCTPCDHVFHKRCIDFWLE-KSRSCPLCRNDLPAS 224
C IC + + PC H+ C+ W E + + CP CR ++ +
Sbjct: 337 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 382
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 28.1 bits (61), Expect = 3.7, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 169 KRIESEKDCAICLDGIVVGQLASCTPCDHVFHKRCIDFWLEKSRSCPLCR 218
+R++ E+ C +CLD V PC H+ C + CP+CR
Sbjct: 8 RRLQEERTCKVCLDRAVS---IVFVPCGHLVCAECA----PGLQLCPICR 50
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 177 CAICLDGIVVGQLASCTPCDHVFHKRCIDFWLEK-SRSCPLCRNDLPAS 224
C IC + + PC H+ C+ W E + CP CR ++ +
Sbjct: 341 CKICAEN---DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIKGT 386
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 192 CTPCDHVFHKRCIDFWL-----EKSRSCPLCRND 220
C CD FH C+D L E CP CRND
Sbjct: 192 CDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 194 PCDHVFHKRCIDFWLE-KSRSCPLCRNDLPAS 224
PC H+ C+ W E + + CP CR ++ +
Sbjct: 41 PCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 72
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 192 CTPCDHVFHKRCIDFWL-----EKSRSCPLCRND 220
C CD FH C+D L E CP CRND
Sbjct: 208 CDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 241
>pdb|3JWN|H Chain H, Complex Of Fimc, Fimf, Fimg And Fimh
pdb|3JWN|N Chain N, Complex Of Fimc, Fimf, Fimg And Fimh
Length = 279
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 71 FHFLSNILADEGVTVDANGCFLSDKGLHLLRLDASGGMPI 110
F F+ NI A+ V V GC +S + + + D G +PI
Sbjct: 142 FQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPI 181
>pdb|1QUN|B Chain B, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|D Chain D, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|F Chain F, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|H Chain H, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|J Chain J, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|L Chain L, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|N Chain N, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1QUN|P Chain P, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin Complex
From Uropathogenic E.Coli
pdb|1KLF|B Chain B, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|D Chain D, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|F Chain F, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|H Chain H, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|J Chain J, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|L Chain L, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|N Chain N, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|P Chain P, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
Length = 279
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 71 FHFLSNILADEGVTVDANGCFLSDKGLHLLRLDASGGMPI 110
F F+ NI A+ V V GC +S + + + D G +PI
Sbjct: 142 FQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPI 181
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 194 PCDHVFHKRCIDFWLE-KSRSCPLCRNDLPAS 224
PC H+ C+ W E + + CP CR ++ +
Sbjct: 44 PCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 75
>pdb|1KIU|B Chain B, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|D Chain D, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|F Chain F, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|H Chain H, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|J Chain J, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|L Chain L, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|N Chain N, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|P Chain P, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
Length = 279
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 71 FHFLSNILADEGVTVDANGCFLSDKGLHLLRLDASGGMPI 110
F F+ NI A+ V V GC +S + + + D G +PI
Sbjct: 142 FQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPI 181
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 27.7 bits (60), Expect = 5.6, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 174 EKDCAICLDGIVVGQLASCTPCDHVFHKRCIDFWLEKSRS----CPLCRN 219
E C++C GQL C C V+H C+D L+ CP C++
Sbjct: 9 EDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 194 PCDHVFHKRCIDFWLEK-SRSCPLCRNDLPAS 224
PC H+ C+ W E + CP CR ++ +
Sbjct: 43 PCGHLMCTSCLTAWQESDGQGCPFCRCEIKGT 74
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 169 KRIESEKDCAICLDGIVVGQLASCTPCDH-VFHKRCIDFWLEKSRSCPLCRN 219
+R++ E+ C +C+D V PC H V + C R CP+CR
Sbjct: 290 RRLQEERTCKVCMDKEVS---VVFIPCGHLVVCQECA----PSLRKCPICRG 334
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 27.3 bits (59), Expect = 6.2, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 169 KRIESEKDCAICLDGIVVGQLASCTPCDH-VFHKRCIDFWLEKSRSCPLC 217
+R++ EK C IC+D + PC H V K+C E CP+C
Sbjct: 19 RRLQEEKLCKICMDRNIA---IVFVPCGHLVTCKQCA----EAVDKCPMC 61
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 27.3 bits (59), Expect = 6.3, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 169 KRIESEKDCAICLDGIVVGQLASCTPCDH-VFHKRCIDFWLEKSRSCPLC 217
+R++ EK C IC+D + PC H V K+C E CP+C
Sbjct: 19 RRLQEEKLCKICMDRNIA---IVFVPCGHLVTCKQCA----EAVDKCPMC 61
>pdb|3RFZ|A Chain A, Crystal Structure Of The Fimd Usher Bound To Its Cognate
Fimc:fimh Substrate
pdb|3RFZ|D Chain D, Crystal Structure Of The Fimd Usher Bound To Its Cognate
Fimc:fimh Substrate
Length = 279
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 71 FHFLSNILADEGVTVDANGCFLSDKGLHLLRLDASGGMPI 110
F F+ NI A+ V V GC +S + + + D G +PI
Sbjct: 142 FQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYRGSVPI 181
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 173 SEKDCAICLDGIVVGQLASCTPCDHVFHKRC 203
+E CA+C +G G+L C C VFH C
Sbjct: 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSC 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,585,301
Number of Sequences: 62578
Number of extensions: 249718
Number of successful extensions: 1139
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1098
Number of HSP's gapped (non-prelim): 91
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)