BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037451
         (220 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BPA|2 Chain 2, Atomic Structure Of Single-Stranded Dna Bacteriophage
          Phix174 And Its Functional Implications
 pdb|1AL0|G Chain G, Procapsid Of Bacteriophage Phix174
 pdb|1CD3|G Chain G, Procapsid Of Bacteriophage Phix174
          Length = 175

 Score = 27.3 bits (59), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 71 PVFDTPNANLSTIYFDSPEYFNGDFTFL 98
          PV  TP A  ST+YFDS     G+  FL
Sbjct: 30 PVLQTPKATSSTLYFDSLTVNAGNGGFL 57


>pdb|1O91|A Chain A, Crystal Structure Of A Collagen Viii Nc1 Domain Trimer
 pdb|1O91|B Chain B, Crystal Structure Of A Collagen Viii Nc1 Domain Trimer
 pdb|1O91|C Chain C, Crystal Structure Of A Collagen Viii Nc1 Domain Trimer
          Length = 178

 Score = 26.9 bits (58), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 154 FMPQDHAVELRKQVQNNRINYNIRASFKVKATLGVIHFSYWLHSR 198
           F P    V+  K + N R NYN +         GV +F+Y +H +
Sbjct: 60  FPPVGAPVKFDKLLYNGRQNYNPQTGIFTCEVPGVYYFAYHVHCK 104


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,883,149
Number of Sequences: 62578
Number of extensions: 191887
Number of successful extensions: 406
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 2
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)