BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037451
         (220 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8VZ13|Y1816_ARATH Uncharacterized protein At1g08160 OS=Arabidopsis thaliana
           GN=At1g08160 PE=2 SV=1
          Length = 221

 Score = 48.1 bits (113), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 64/128 (50%), Gaps = 7/128 (5%)

Query: 61  IIFLVIRPRTPVFDTPNANLSTIYF-DSPEYFNGDFTFLANFSNPNRKIGARFEFLEIEL 119
           I +L +RP+  ++    A++      ++ ++ N  F+++    NP + +  R+  + I  
Sbjct: 57  ITYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEKHVSVRYHSMRIST 116

Query: 120 LFFNRLISTQIVQPFSQQPR-EQRLESVHMISSLVFMPQDHAVELRKQVQNNRINYNI-- 176
              N+ ++ + + PF Q+P+ E R+E+  ++S  V + + +A +LR +     I   +  
Sbjct: 117 AHHNQSVAHKNISPFKQRPKNETRIET-QLVSHNVALSKFNARDLRAEKSKGTIEMEVYI 175

Query: 177 --RASFKV 182
             R S+K 
Sbjct: 176 TARVSYKT 183


>sp|Q96A25|T106A_HUMAN Transmembrane protein 106A OS=Homo sapiens GN=TMEM106A PE=2 SV=1
          Length = 262

 Score = 33.1 bits (74), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 13/77 (16%)

Query: 30  RPRQTNILIWCCATLCLIFSLILIFFGIATLIIFLVIRPRTPVFDTPNANLSTIYFDSPE 89
           +P+ T + ++    +CL+ S  ++FF          + PR+ +      N ST+ FD  +
Sbjct: 88  KPKHTKLFVFLAVLICLVTSSFIVFF----------LFPRSVIVQPAGLNSSTVAFDEAD 137

Query: 90  -YFNGDFTFLANFSNPN 105
            Y N   T + N SN N
Sbjct: 138 IYLN--ITNILNISNGN 152


>sp|Q5EA90|T106A_BOVIN Transmembrane protein 106A OS=Bos taurus GN=TMEM106A PE=2 SV=1
          Length = 261

 Score = 31.2 bits (69), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 13/77 (16%)

Query: 30  RPRQTNILIWCCATLCLIFSLILIFFGIATLIIFLVIRPRTPVFDTPNANLSTIYFDSPE 89
           +PR T + ++   ++CL+ S ++IFF          + PRT        N ST+  D   
Sbjct: 87  KPRHTKLSVFLAVSICLVTSSLIIFF----------LFPRTIAVQPVGLNSSTVATDEAN 136

Query: 90  -YFNGDFTFLANFSNPN 105
            Y N   T + N SN N
Sbjct: 137 VYLN--ITSILNISNNN 151


>sp|P34711|UNC17_CAEEL Vesicular acetylcholine transporter unc-17 OS=Caenorhabditis
           elegans GN=unc-17 PE=2 SV=1
          Length = 532

 Score = 30.8 bits (68), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 11/112 (9%)

Query: 51  ILIFFGIATLI---IFLVIRPRTPVFDTPNANLSTIYFDSPEYFNGDFTFLANFSNPNRK 107
           +L+   IA L+   +++VI P  P +     N    +    E ++ + + LAN +   R+
Sbjct: 33  VLVIVSIALLLDNMLYMVIVPIIPKYLRDIHNYQVTF----EGYHNETSQLANGTYLVRE 88

Query: 108 IGARFEFLEIEL----LFFNRLISTQIVQPFSQQPREQRLESVHMISSLVFM 155
           +G R  FL+ EL    LF ++ +    V PFS    ++    + MI  L  M
Sbjct: 89  VGGRINFLDEELELGWLFASKALLQIFVNPFSGYIIDRVGYEIPMILGLCTM 140


>sp|Q5BK83|T106A_RAT Transmembrane protein 106A OS=Rattus norvegicus GN=Tmem106a PE=2
           SV=1
          Length = 261

 Score = 30.4 bits (67), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 11/76 (14%)

Query: 30  RPRQTNILIWCCATLCLIFSLILIFFGIATLIIFLVIRPRTPVFDTPNANLSTIYFDSPE 89
           +PR+T + ++   T+CL+   + IFF          + PR  V      N ST+ FD   
Sbjct: 87  KPRRTKLSVFLAVTICLLIFSLTIFF----------LYPRNIVVHPVGLNSSTVAFDE-T 135

Query: 90  YFNGDFTFLANFSNPN 105
           +   + T + N +N N
Sbjct: 136 HVQLNMTNVLNITNSN 151


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.141    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,822,623
Number of Sequences: 539616
Number of extensions: 3276492
Number of successful extensions: 10029
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 10025
Number of HSP's gapped (non-prelim): 8
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)