Query 037451
Match_columns 220
No_of_seqs 132 out of 814
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 12:24:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.2E-37 2.7E-42 258.7 25.6 187 27-220 26-217 (219)
2 PF03168 LEA_2: Late embryogen 99.5 2.9E-13 6.2E-18 98.4 8.4 83 98-186 1-84 (101)
3 smart00769 WHy Water Stress an 98.8 1.4E-07 3.1E-12 69.0 11.2 85 89-179 11-97 (100)
4 PF07092 DUF1356: Protein of u 98.3 9.8E-05 2.1E-09 61.8 17.5 83 66-149 96-180 (238)
5 PF12751 Vac7: Vacuolar segreg 97.7 0.00044 9.5E-09 61.5 11.3 36 91-127 346-381 (387)
6 COG5608 LEA14-like dessication 97.2 0.077 1.7E-06 41.5 17.8 93 69-171 31-124 (161)
7 PLN03160 uncharacterized prote 88.5 13 0.00029 30.9 12.3 112 20-143 24-147 (219)
8 PF06072 Herpes_US9: Alphaherp 84.5 0.22 4.9E-06 32.5 -0.6 8 57-64 52-59 (60)
9 TIGR02588 conserved hypothetic 81.6 3.9 8.5E-05 30.9 5.0 49 51-106 12-62 (122)
10 PF14927 Neurensin: Neurensin 80.8 3.3 7.2E-05 32.1 4.5 19 45-63 47-65 (140)
11 PF09624 DUF2393: Protein of u 72.4 33 0.00071 26.4 8.2 62 60-130 35-98 (149)
12 PF11906 DUF3426: Protein of u 71.1 16 0.00035 27.9 6.2 75 74-149 49-135 (149)
13 KOG3950 Gamma/delta sarcoglyca 70.2 8 0.00017 32.8 4.4 22 90-111 105-126 (292)
14 PF14155 DUF4307: Domain of un 69.8 6.7 0.00015 29.1 3.6 79 59-150 19-100 (112)
15 COG4698 Uncharacterized protei 59.3 34 0.00074 27.7 5.9 29 59-87 27-58 (197)
16 PF11837 DUF3357: Domain of un 58.3 3.3 7.1E-05 30.5 0.0 10 38-47 29-38 (106)
17 PRK10893 lipopolysaccharide ex 58.3 1E+02 0.0022 25.1 9.3 21 67-87 37-57 (192)
18 PRK05529 cell division protein 56.7 21 0.00045 30.4 4.6 44 70-114 58-128 (255)
19 PF08113 CoxIIa: Cytochrome c 55.2 5.9 0.00013 22.8 0.7 15 50-64 10-24 (34)
20 PF10907 DUF2749: Protein of u 52.0 20 0.00042 24.0 2.9 16 54-69 13-28 (66)
21 PF12505 DUF3712: Protein of u 50.7 47 0.001 24.7 5.3 26 92-118 99-124 (125)
22 PF05473 Herpes_UL45: UL45 pro 49.7 22 0.00048 29.2 3.6 14 35-48 44-57 (200)
23 PF04573 SPC22: Signal peptida 49.4 64 0.0014 25.9 6.1 36 39-76 7-42 (175)
24 PF04790 Sarcoglycan_1: Sarcog 48.0 1.8E+02 0.0039 25.0 13.0 18 90-107 83-100 (264)
25 PF05478 Prominin: Prominin; 45.9 23 0.0005 35.3 3.7 33 28-60 128-160 (806)
26 PF15361 RIC3: Resistance to i 45.3 13 0.00028 29.2 1.5 18 50-67 86-103 (152)
27 PF08999 SP_C-Propep: Surfacta 45.0 25 0.00054 24.6 2.7 17 20-36 11-27 (93)
28 PRK13183 psbN photosystem II r 44.6 33 0.00072 21.3 2.9 22 48-69 12-33 (46)
29 PF00927 Transglut_C: Transglu 43.4 53 0.0012 23.5 4.5 59 91-149 13-75 (107)
30 PRK06531 yajC preprotein trans 42.4 13 0.00029 27.7 1.1 13 58-70 12-24 (113)
31 PRK07718 fliL flagellar basal 40.3 45 0.00097 25.7 3.8 15 111-125 63-77 (142)
32 PF02468 PsbN: Photosystem II 40.3 31 0.00067 21.2 2.3 21 48-68 9-29 (43)
33 TIGR01732 tiny_TM_bacill conse 39.1 37 0.0008 18.4 2.2 14 50-63 12-25 (26)
34 PF09865 DUF2092: Predicted pe 38.9 2.3E+02 0.0049 23.5 8.4 39 89-128 35-75 (214)
35 CHL00020 psbN photosystem II p 38.6 42 0.0009 20.6 2.6 22 48-69 9-30 (43)
36 PF09680 Tiny_TM_bacill: Prote 38.5 33 0.00071 18.3 1.9 11 52-62 12-22 (24)
37 PF04478 Mid2: Mid2 like cell 38.2 27 0.00058 27.5 2.3 21 52-72 61-81 (154)
38 PTZ00116 signal peptidase; Pro 37.1 1.1E+02 0.0024 24.8 5.7 81 39-123 7-93 (185)
39 PF15012 DUF4519: Domain of un 36.8 40 0.00087 21.9 2.5 19 51-69 38-56 (56)
40 PF06092 DUF943: Enterobacteri 36.3 23 0.00049 28.1 1.6 18 52-69 12-29 (157)
41 PF13396 PLDc_N: Phospholipase 34.3 61 0.0013 19.5 3.0 19 51-69 28-46 (46)
42 KOG0860 Synaptobrevin/VAMP-lik 34.1 27 0.00058 26.2 1.6 14 34-47 86-99 (116)
43 PF05170 AsmA: AsmA family; I 34.1 1.8E+02 0.0039 27.5 7.7 67 110-181 468-534 (604)
44 PF03100 CcmE: CcmE; InterPro 33.8 74 0.0016 24.1 4.1 8 116-123 83-90 (131)
45 PF11322 DUF3124: Protein of u 32.9 2.2E+02 0.0048 21.6 6.8 54 90-146 20-75 (125)
46 PF07705 CARDB: CARDB; InterP 32.7 1.1E+02 0.0025 20.8 4.7 51 93-148 19-69 (101)
47 PF06919 Phage_T4_Gp30_7: Phag 31.2 76 0.0016 23.4 3.5 40 103-143 40-80 (121)
48 PRK07021 fliL flagellar basal 31.0 2.6E+02 0.0056 21.8 7.4 18 109-126 77-94 (162)
49 PF11770 GAPT: GRB2-binding ad 30.9 68 0.0015 25.2 3.4 21 49-69 17-37 (158)
50 COG1589 FtsQ Cell division sep 30.8 56 0.0012 27.9 3.3 32 51-82 38-69 (269)
51 PF09911 DUF2140: Uncharacteri 30.6 75 0.0016 25.7 3.8 21 51-71 11-31 (187)
52 PF11239 DUF3040: Protein of u 29.8 75 0.0016 21.9 3.2 7 52-58 55-61 (82)
53 PF01102 Glycophorin_A: Glycop 29.3 23 0.0005 26.8 0.6 24 54-77 77-101 (122)
54 PF09604 Potass_KdpF: F subuni 29.1 23 0.00049 19.1 0.4 19 51-69 5-23 (25)
55 PF05545 FixQ: Cbb3-type cytoc 29.1 21 0.00046 22.1 0.3 18 53-70 17-34 (49)
56 PF06129 Chordopox_G3: Chordop 28.9 64 0.0014 23.9 2.8 30 95-124 51-86 (109)
57 PHA03029 hypothetical protein; 28.6 67 0.0015 22.1 2.7 37 33-70 48-84 (92)
58 COG3121 FimC P pilus assembly 28.5 1.4E+02 0.003 25.1 5.2 40 98-143 166-205 (235)
59 PF07423 DUF1510: Protein of u 27.9 41 0.00088 28.1 1.8 7 161-167 153-159 (217)
60 KOG3927 Na+/K+ ATPase, beta su 27.6 70 0.0015 28.1 3.3 49 36-86 41-92 (300)
61 PF07787 DUF1625: Protein of u 27.2 67 0.0014 27.0 3.1 13 56-68 236-248 (248)
62 PF11797 DUF3324: Protein of u 27.1 2.8E+02 0.0061 21.0 10.8 90 70-182 27-118 (140)
63 cd01324 cbb3_Oxidase_CcoQ Cyto 26.4 29 0.00063 21.7 0.6 18 53-70 18-35 (48)
64 PF06024 DUF912: Nucleopolyhed 26.0 90 0.002 22.5 3.2 14 54-67 74-88 (101)
65 PF02038 ATP1G1_PLM_MAT8: ATP1 25.8 1.1E+02 0.0024 19.4 3.1 17 44-60 17-33 (50)
66 COG4736 CcoQ Cbb3-type cytochr 25.1 28 0.00061 22.9 0.3 16 54-69 18-33 (60)
67 PF14874 PapD-like: Flagellar- 25.0 2.4E+02 0.0052 19.5 6.7 53 93-149 20-72 (102)
68 PRK11677 hypothetical protein; 24.9 53 0.0011 25.3 1.8 18 46-63 3-20 (134)
69 PF10177 DUF2371: Uncharacteri 24.5 1.1E+02 0.0023 23.8 3.5 29 39-69 34-64 (141)
70 PRK05751 preprotein translocas 24.0 3.6E+02 0.0079 21.2 6.8 18 70-87 10-27 (156)
71 PF04906 Tweety: Tweety; Inte 23.9 88 0.0019 28.5 3.4 9 39-47 58-66 (406)
72 PF14283 DUF4366: Domain of un 23.9 69 0.0015 26.7 2.5 10 64-73 181-190 (218)
73 PRK00523 hypothetical protein; 23.7 81 0.0018 21.6 2.4 18 45-62 7-24 (72)
74 PF09307 MHC2-interact: CLIP, 23.6 26 0.00057 26.2 0.0 29 38-67 29-57 (114)
75 COG2332 CcmE Cytochrome c-type 23.6 3.5E+02 0.0075 21.3 6.1 33 99-131 76-109 (153)
76 PF05399 EVI2A: Ectropic viral 23.5 77 0.0017 26.4 2.6 18 43-60 131-148 (227)
77 PRK13150 cytochrome c-type bio 23.4 3E+02 0.0064 21.8 5.9 28 96-123 79-106 (159)
78 PF07423 DUF1510: Protein of u 23.3 71 0.0015 26.7 2.5 6 43-48 15-20 (217)
79 PRK01844 hypothetical protein; 23.1 86 0.0019 21.5 2.4 16 47-62 8-23 (72)
80 COG3763 Uncharacterized protei 22.6 89 0.0019 21.3 2.4 15 46-60 7-21 (71)
81 PRK13031 preprotein translocas 22.6 3.8E+02 0.0083 21.0 7.0 17 70-86 6-22 (149)
82 PF11395 DUF2873: Protein of u 22.5 1.2E+02 0.0025 18.0 2.6 11 56-66 22-32 (43)
83 PF02009 Rifin_STEVOR: Rifin/s 22.4 30 0.00066 30.3 0.1 17 51-67 264-280 (299)
84 PF07184 CTV_P33: Citrus trist 22.2 81 0.0018 26.0 2.5 24 39-62 279-302 (303)
85 KOG3385 V-SNARE [Intracellular 22.0 98 0.0021 23.2 2.7 19 43-63 98-116 (118)
86 COG3736 VirB8 Type IV secretor 21.9 77 0.0017 26.8 2.5 13 36-48 41-53 (239)
87 PF11628 TCR_zetazeta: T-cell 21.7 75 0.0016 18.3 1.6 21 44-64 4-24 (33)
88 PF15145 DUF4577: Domain of un 21.6 88 0.0019 23.3 2.4 21 49-69 69-89 (128)
89 PHA02973 hypothetical protein; 21.2 2.6E+02 0.0057 20.4 4.7 53 59-122 13-66 (102)
90 PF08956 DUF1869: Domain of un 21.0 1.2E+02 0.0027 19.8 2.7 19 96-114 5-23 (60)
91 PF03908 Sec20: Sec20; InterP 20.9 80 0.0017 22.2 2.0 12 52-63 78-89 (92)
92 PHA03281 envelope glycoprotein 20.8 1.1E+02 0.0025 29.0 3.5 15 1-15 524-538 (642)
93 TIGR01478 STEVOR variant surfa 20.8 32 0.0007 29.8 -0.0 17 50-66 266-282 (295)
94 TIGR02115 potass_kdpF K+-trans 20.7 20 0.00044 19.5 -0.8 19 51-69 4-22 (26)
95 PF12321 DUF3634: Protein of u 20.4 37 0.0008 25.1 0.2 23 60-82 11-37 (108)
96 PRK08455 fliL flagellar basal 20.2 1E+02 0.0022 24.8 2.8 16 110-125 102-117 (182)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=258.71 Aligned_cols=187 Identities=13% Similarity=0.189 Sum_probs=152.7
Q ss_pred CCCCCCccccchhhhHHHHHHHHHHHHHHHHHhheeeeEEecCCCEEEecceeeeeEEcCC----CCeeeEEEEEEEEEe
Q 037451 27 HHPRPRQTNILIWCCATLCLIFSLILIFFGIATLIIFLVIRPRTPVFDTPNANLSTIYFDS----PEYFNGDFTFLANFS 102 (220)
Q Consensus 27 ~~~~~~r~~~~~~C~~~l~~~~~~l~l~lgi~~li~~lvl~P~~P~~~V~~~~v~~f~~~~----~~~l~~~~~~~l~v~ 102 (220)
.+++++||+++++||+|++.+ ++++++++++++|++||||+|+|+|+++++++|++++ ...+|++++++++++
T Consensus 26 ~~~~~~~r~~~~~c~~~~~a~---~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~ 102 (219)
T PLN03160 26 NHLKKTRRRNCIKCCGCITAT---LLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVK 102 (219)
T ss_pred cchhccccccceEEHHHHHHH---HHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEE
Confidence 333333333444454444433 3344677778889999999999999999999999864 246788899999999
Q ss_pred cCCCeeeEEEecEEEEEEECCEEeecccCCCeeecCCCceEEEEEEEeeeeecCHHHHHHHHHhhcCCeEEEEEEEEEEE
Q 037451 103 NPNRKIGARFEFLEIELLFFNRLISTQIVQPFSQQPREQRLESVHMISSLVFMPQDHAVELRKQVQNNRINYNIRASFKV 182 (220)
Q Consensus 103 NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~v~~~l~~~~v~l~~~~~~~l~~d~~~G~v~l~v~~~~~v 182 (220)
|||+ ++++|+++++.++|+|+.+|.+.+|+|+|++++++.+++++...+..+.. ..+|.+|+++|.++|++.+++++
T Consensus 103 NPN~-~~~~Y~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~--~~~L~~D~~~G~v~l~~~~~v~g 179 (219)
T PLN03160 103 NPNV-ASFKYSNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS--VPGLLTDISSGLLNMNSYTRIGG 179 (219)
T ss_pred CCCc-eeEEEcCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc--chhHHHHhhCCeEEEEEEEEEEE
Confidence 9996 89999999999999999999999999999999999999998765544332 25799999999999999999999
Q ss_pred EEEEeEEEE-eeEEeEEeEEEEcCCCCcceecCCcccCC
Q 037451 183 KATLGVIHF-SYWLHSRCQLEMTGPPTGVLVAHRCQTKR 220 (220)
Q Consensus 183 r~~~g~~~~-~~~~~v~C~l~v~~~~~g~i~~~~C~~k~ 220 (220)
++++|.+.. ++..+++|++.|+. .+.++.++.|+.|.
T Consensus 180 kVkv~~i~k~~v~~~v~C~v~V~~-~~~~i~~~~C~~~~ 217 (219)
T PLN03160 180 KVKILKIIKKHVVVKMNCTMTVNI-TSQAIQGQKCKRHV 217 (219)
T ss_pred EEEEEEEEEEEEEEEEEeEEEEEC-CCCEEeccEecccc
Confidence 999887755 79999999999984 66788899999873
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.46 E-value=2.9e-13 Score=98.42 Aligned_cols=83 Identities=14% Similarity=0.288 Sum_probs=67.0
Q ss_pred EEEEecCCCeeeEEEecEEEEEEECCEEee-cccCCCeeecCCCceEEEEEEEeeeeecCHHHHHHHHHhhcCCeEEEEE
Q 037451 98 LANFSNPNRKIGARFEFLEIELLFFNRLIS-TQIVQPFSQQPREQRLESVHMISSLVFMPQDHAVELRKQVQNNRINYNI 176 (220)
Q Consensus 98 ~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg-~~~vp~f~q~~~~t~~v~~~l~~~~v~l~~~~~~~l~~d~~~G~v~l~v 176 (220)
+|+++|||. ++++|+++++.++|+|..+| ....++|+|++++++.+.+.+..+... ....+.++. +|...+++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~----l~~~l~~~~-~~~~~~~v 74 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSD----LPRLLKDLL-AGRVPFDV 74 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHH----HHHHHHHHH-HTTSCEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHH----HHHHHHhhh-ccccceEE
Confidence 589999996 99999999999999999999 677899999999999998887765432 256677777 66777777
Q ss_pred EEEEEEEEEE
Q 037451 177 RASFKVKATL 186 (220)
Q Consensus 177 ~~~~~vr~~~ 186 (220)
.+++++++++
T Consensus 75 ~~~~~g~~~v 84 (101)
T PF03168_consen 75 TYRIRGTFKV 84 (101)
T ss_dssp EEEEEEEEE-
T ss_pred EEEEEEEEEE
Confidence 7777888884
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.77 E-value=1.4e-07 Score=68.97 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=68.3
Q ss_pred CeeeEEEEEEEEEecCCCeeeEEEecEEEEEEECCEEeecccCC-CeeecCCCceEEEEEEEeeeeecCHHHHHHHHHhh
Q 037451 89 EYFNGDFTFLANFSNPNRKIGARFEFLEIELLFFNRLISTQIVQ-PFSQQPREQRLESVHMISSLVFMPQDHAVELRKQV 167 (220)
Q Consensus 89 ~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~t~~v~~~l~~~~v~l~~~~~~~l~~d~ 167 (220)
+.++.++.+.+.+.||| .+++.|+.++..++|+|..+|++..+ ++..++++++.+.+.+..+ . .....+..++
T Consensus 11 ~~~~~~~~l~l~v~NPN-~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~----~~~~~~~~~l 84 (100)
T smart00769 11 SGLEIEIVLKVKVQNPN-PFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-L----FLAEALIWHI 84 (100)
T ss_pred cceEEEEEEEEEEECCC-CCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-h----hHhHHHHHhh
Confidence 45778999999999999 89999999999999999999999985 7999999999999888763 2 2334555666
Q ss_pred cCCe-EEEEEEEE
Q 037451 168 QNNR-INYNIRAS 179 (220)
Q Consensus 168 ~~G~-v~l~v~~~ 179 (220)
.+|. ++++++++
T Consensus 85 ~~~~~~~y~l~g~ 97 (100)
T smart00769 85 ANGEEIPYRLDGK 97 (100)
T ss_pred ccCCCccEEEEEE
Confidence 6654 55555544
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.32 E-value=9.8e-05 Score=61.77 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=63.2
Q ss_pred EecCCCEEEecceeeeeEEcCC-CCeeeEEEEEEEEEecCCCeeeEEEecEEEEEEECCEEeecccCCC-eeecCCCceE
Q 037451 66 IRPRTPVFDTPNANLSTIYFDS-PEYFNGDFTFLANFSNPNRKIGARFEFLEIELLFFNRLISTQIVQP-FSQQPREQRL 143 (220)
Q Consensus 66 l~P~~P~~~V~~~~v~~f~~~~-~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp~-f~q~~~~t~~ 143 (220)
+-||.-.++-.++......++. .+.+..++.-.|.++||| +..+.-.++++++.|....+|.+.... ...++++.+.
T Consensus 96 LfPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~N-Fy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q 174 (238)
T PF07092_consen 96 LFPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPN-FYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQ 174 (238)
T ss_pred EeCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCC-EEEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCce
Confidence 3388666555555444444443 246888999999999999 999999999999999999999998754 4678888777
Q ss_pred EEEEEE
Q 037451 144 ESVHMI 149 (220)
Q Consensus 144 v~~~l~ 149 (220)
+..++.
T Consensus 175 ~~~tV~ 180 (238)
T PF07092_consen 175 VNYTVK 180 (238)
T ss_pred EEEEee
Confidence 766554
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.73 E-value=0.00044 Score=61.48 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=29.6
Q ss_pred eeEEEEEEEEEecCCCeeeEEEecEEEEEEECCEEee
Q 037451 91 FNGDFTFLANFSNPNRKIGARFEFLEIELLFFNRLIS 127 (220)
Q Consensus 91 l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg 127 (220)
-..-|++++.+.||| -+.|..+++++.+|-+..-++
T Consensus 346 qELmfdl~V~A~NPn-~~~V~I~d~dldIFAKS~yvg 381 (387)
T PF12751_consen 346 QELMFDLTVEAFNPN-WFTVTIDDMDLDIFAKSRYVG 381 (387)
T ss_pred ceEEEeeEEEEECCC-eEEEEeccceeeeEecCCccC
Confidence 356789999999999 899999999999986554333
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.17 E-value=0.077 Score=41.53 Aligned_cols=93 Identities=11% Similarity=0.080 Sum_probs=68.0
Q ss_pred CCCEEEecceeeeeEEcCCCCeeeEEEEEEEEEecCCCeeeEEEecEEEEEEECCEEeecccC-CCeeecCCCceEEEEE
Q 037451 69 RTPVFDTPNANLSTIYFDSPEYFNGDFTFLANFSNPNRKIGARFEFLEIELLFFNRLISTQIV-QPFSQQPREQRLESVH 147 (220)
Q Consensus 69 ~~P~~~V~~~~v~~f~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~v-p~f~q~~~~t~~v~~~ 147 (220)
+.|.+.--.+..-... .....+-.++.++||| -+.+-...++..++-+|..+|.+.. .++..++++...+.+.
T Consensus 31 ~~p~ve~~ka~wGkvt-----~s~~EiV~t~KiyNPN-~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~ 104 (161)
T COG5608 31 KKPGVESMKAKWGKVT-----NSETEIVGTLKIYNPN-PFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVP 104 (161)
T ss_pred CCCCceEEEEEEEEEe-----ccceEEEEEEEecCCC-CcceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEE
Confidence 4455554444444432 2345788899999999 8999999999999999999999975 6799999999999888
Q ss_pred EEeeeeecCHHHHHHHHHhhcCCe
Q 037451 148 MISSLVFMPQDHAVELRKQVQNNR 171 (220)
Q Consensus 148 l~~~~v~l~~~~~~~l~~d~~~G~ 171 (220)
+..+.-.+ -+-+...+++|.
T Consensus 105 l~~d~~~~----ke~w~~hi~ngE 124 (161)
T COG5608 105 LRLDNSKI----KEWWVTHIENGE 124 (161)
T ss_pred EEEehHHH----HHHHHHHhhccC
Confidence 76543222 234455667764
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=88.47 E-value=13 Score=30.86 Aligned_cols=112 Identities=10% Similarity=-0.003 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHHHhheeeeEEecC--CCEEEecceeee-------eEEcC--CC
Q 037451 20 PRKPPVLHHPRPRQTNILIWCCATLCLIFSLILIFFGIATLIIFLVIRPR--TPVFDTPNANLS-------TIYFD--SP 88 (220)
Q Consensus 20 ~~~~~~~~~~~~~r~~~~~~C~~~l~~~~~~l~l~lgi~~li~~lvl~P~--~P~~~V~~~~v~-------~f~~~--~~ 88 (220)
+.+..+.. |+|++.+|+.|+|.+..+++ +++++++.++++ --.|+ .-.++++++.+. .++++ ..
T Consensus 24 ~~~~~~~~--~r~~~~~c~~~~~a~~l~l~--~v~~~l~~~vfr-Pk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~ 98 (219)
T PLN03160 24 ATNHLKKT--RRRNCIKCCGCITATLLILA--TTILVLVFTVFR-VKDPVIKMNGVTVTKLELINNTTLRPGTNITLIAD 98 (219)
T ss_pred cCcchhcc--ccccceEEHHHHHHHHHHHH--HHHHheeeEEEE-ccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEE
Confidence 34455543 34455556666666555542 222333344443 45554 344555554432 12221 00
Q ss_pred -CeeeEEEEEEEEEecCCCeeeEEEecEEEEEEECCEEeecccCCCeeecCCCceE
Q 037451 89 -EYFNGDFTFLANFSNPNRKIGARFEFLEIELLFFNRLISTQIVQPFSQQPREQRL 143 (220)
Q Consensus 89 -~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~ 143 (220)
..=|.|. +.+... |..+.++|+...+.- ..+..+..+++.+..-+.+.
T Consensus 99 v~v~NPN~-~~~~Y~--~~~~~v~Y~g~~vG~----a~~p~g~~~ar~T~~l~~tv 147 (219)
T PLN03160 99 VSVKNPNV-ASFKYS--NTTTTIYYGGTVVGE----ARTPPGKAKARRTMRMNVTV 147 (219)
T ss_pred EEEECCCc-eeEEEc--CeEEEEEECCEEEEE----EEcCCcccCCCCeEEEEEEE
Confidence 0112333 334443 346889998754432 34556666766666666553
No 8
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=84.45 E-value=0.22 Score=32.55 Aligned_cols=8 Identities=13% Similarity=0.497 Sum_probs=3.5
Q ss_pred HHhheeee
Q 037451 57 IATLIIFL 64 (220)
Q Consensus 57 i~~li~~l 64 (220)
+-+++.|+
T Consensus 52 lG~~~~~~ 59 (60)
T PF06072_consen 52 LGALVAWH 59 (60)
T ss_pred HHHHhhcc
Confidence 33444443
No 9
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=81.57 E-value=3.9 Score=30.90 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=32.7
Q ss_pred HHHHHHHHhheeee--EEecCCCEEEecceeeeeEEcCCCCeeeEEEEEEEEEecCCC
Q 037451 51 ILIFFGIATLIIFL--VIRPRTPVFDTPNANLSTIYFDSPEYFNGDFTFLANFSNPNR 106 (220)
Q Consensus 51 l~l~lgi~~li~~l--vl~P~~P~~~V~~~~v~~f~~~~~~~l~~~~~~~l~v~NPN~ 106 (220)
++++++++.+++|. .-+++.|.+.+......+ +....+.+-++++|--.
T Consensus 12 ~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r-------~~~gqyyVpF~V~N~gg 62 (122)
T TIGR02588 12 TLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER-------MQTGQYYVPFAIHNLGG 62 (122)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCeEEEeehheeE-------EeCCEEEEEEEEEeCCC
Confidence 44556666677765 455678999888776655 23345777788888663
No 10
>PF14927 Neurensin: Neurensin
Probab=80.76 E-value=3.3 Score=32.11 Aligned_cols=19 Identities=32% Similarity=0.558 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhheee
Q 037451 45 CLIFSLILIFFGIATLIIF 63 (220)
Q Consensus 45 ~~~~~~l~l~lgi~~li~~ 63 (220)
++++-++++++|++++++-
T Consensus 47 ~~i~g~l~Ll~Gi~~l~vg 65 (140)
T PF14927_consen 47 GFISGLLLLLLGIVALTVG 65 (140)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4454566778888876553
No 11
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=72.41 E-value=33 Score=26.36 Aligned_cols=62 Identities=6% Similarity=0.124 Sum_probs=39.8
Q ss_pred heeeeEEec--CCCEEEecceeeeeEEcCCCCeeeEEEEEEEEEecCCCeeeEEEecEEEEEEECCEEeeccc
Q 037451 60 LIIFLVIRP--RTPVFDTPNANLSTIYFDSPEYFNGDFTFLANFSNPNRKIGARFEFLEIELLFFNRLISTQI 130 (220)
Q Consensus 60 li~~lvl~P--~~P~~~V~~~~v~~f~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~ 130 (220)
+++|.++.. +.+..++.+.+ .+.. +-.+.+..+++|-. +..+..=.+++.+...+...++..
T Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~--~l~~------~~~~~v~g~V~N~g-~~~i~~c~i~~~l~~~~~~~~n~~ 98 (149)
T PF09624_consen 35 FFGYYWLDKYLKKIELTLTSQK--RLQY------SESFYVDGTVTNTG-KFTIKKCKITVKLYNDKQVSGNKF 98 (149)
T ss_pred HHHHHHHhhhcCCceEEEeeee--eeee------ccEEEEEEEEEECC-CCEeeEEEEEEEEEeCCCccCchh
Confidence 344444444 45666666543 2332 34577788999988 678888788899988776555543
No 12
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=71.14 E-value=16 Score=27.94 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=46.4
Q ss_pred EecceeeeeEEcCCCCeeeEEEEEEEEEecCCCeeeEEEecEEEEEE-ECCEEeecccC-C----------CeeecCCCc
Q 037451 74 DTPNANLSTIYFDSPEYFNGDFTFLANFSNPNRKIGARFEFLEIELL-FFNRLISTQIV-Q----------PFSQQPREQ 141 (220)
Q Consensus 74 ~V~~~~v~~f~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~-Y~g~~lg~~~v-p----------~f~q~~~~t 141 (220)
.++.+++++..+.....-.-.+.++.+++|.. .....|-.++++++ -+|+.+++-.+ | .-..+++.+
T Consensus 49 ~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~-~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~ 127 (149)
T PF11906_consen 49 DIDALKIESSDLRPVPDGPGVLVVSGTIRNRA-DFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGES 127 (149)
T ss_pred CcceEEEeeeeEEeecCCCCEEEEEEEEEeCC-CCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCe
Confidence 44444444433322112245678888999988 67888888999988 67777776554 3 234555565
Q ss_pred eEEEEEEE
Q 037451 142 RLESVHMI 149 (220)
Q Consensus 142 ~~v~~~l~ 149 (220)
..+.+.+.
T Consensus 128 ~~~~~~~~ 135 (149)
T PF11906_consen 128 VPFRLRLE 135 (149)
T ss_pred EEEEEEee
Confidence 55555543
No 13
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=70.18 E-value=8 Score=32.79 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=17.1
Q ss_pred eeeEEEEEEEEEecCCCeeeEE
Q 037451 90 YFNGDFTFLANFSNPNRKIGAR 111 (220)
Q Consensus 90 ~l~~~~~~~l~v~NPN~~~~i~ 111 (220)
.+...=++++.++|||.++.=+
T Consensus 105 ~~~S~rnvtvnarn~~g~v~~~ 126 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVTGQ 126 (292)
T ss_pred EEEeccCeeEEccCCCCceeee
Confidence 5667778999999999775443
No 14
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=69.77 E-value=6.7 Score=29.10 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=35.3
Q ss_pred hheeeeEEe-cCCCEEEecceeeeeEEcCCCCeeeEEEEEEEEEecCCCeeeEEEecEEEEEEECCEEeeccc--CCCee
Q 037451 59 TLIIFLVIR-PRTPVFDTPNANLSTIYFDSPEYFNGDFTFLANFSNPNRKIGARFEFLEIELLFFNRLISTQI--VQPFS 135 (220)
Q Consensus 59 ~li~~lvl~-P~~P~~~V~~~~v~~f~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~--vp~f~ 135 (220)
+++.|+.++ -..+.+ +.+..+|++.+++.+..+|+ ++- +|.+. .+- .--...|++..+|.-. +|+
T Consensus 19 ~~~~w~~~~~~~~~~v---~~~~~gf~vv~d~~v~v~f~--Vtr-~~~~~--a~C--~VrA~~~d~aeVGrreV~vp~-- 86 (112)
T PF14155_consen 19 AVVAWFGYSQFGSPPV---SAEVIGFEVVDDSTVEVTFD--VTR-DPGRP--AVC--IVRALDYDGAEVGRREVLVPP-- 86 (112)
T ss_pred HHHhHhhhhhccCCCc---eEEEEEEEECCCCEEEEEEE--EEE-CCCCC--EEE--EEEEEeCCCCEEEEEEEEECC--
Confidence 344444444 334444 33445566655444333333 222 25532 111 1122346777777654 455
Q ss_pred ecCCCceEEEEEEEe
Q 037451 136 QQPREQRLESVHMIS 150 (220)
Q Consensus 136 q~~~~t~~v~~~l~~ 150 (220)
+...+..+++.+..
T Consensus 87 -~~~~~~~~~v~v~T 100 (112)
T PF14155_consen 87 -SGERTVRVTVTVRT 100 (112)
T ss_pred -CCCcEEEEEEEEEe
Confidence 33444445555543
No 15
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.31 E-value=34 Score=27.71 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=18.7
Q ss_pred hheeeeEEecCCCEEEecceee---eeEEcCC
Q 037451 59 TLIIFLVIRPRTPVFDTPNANL---STIYFDS 87 (220)
Q Consensus 59 ~li~~lvl~P~~P~~~V~~~~v---~~f~~~~ 87 (220)
++++-+++.|+.+...+.+++= ..|++++
T Consensus 27 ~~i~~~vlsp~ee~t~~~~a~~~~~~~fqitt 58 (197)
T COG4698 27 VLIALFVLSPREEPTHLEDASEKSEKSFQITT 58 (197)
T ss_pred HHhheeeccCCCCCchhhccCcccceeEEEEc
Confidence 5555668899997777776543 3355543
No 16
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=58.28 E-value=3.3 Score=30.49 Aligned_cols=10 Identities=10% Similarity=0.019 Sum_probs=0.0
Q ss_pred hhhhHHHHHH
Q 037451 38 IWCCATLCLI 47 (220)
Q Consensus 38 ~~C~~~l~~~ 47 (220)
.++..+++.+
T Consensus 29 k~~~~i~~s~ 38 (106)
T PF11837_consen 29 KCLAAIFSSL 38 (106)
T ss_dssp ----------
T ss_pred hhHHHHHHHH
Confidence 4344444444
No 17
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=58.27 E-value=1e+02 Score=25.08 Aligned_cols=21 Identities=5% Similarity=0.216 Sum_probs=16.6
Q ss_pred ecCCCEEEecceeeeeEEcCC
Q 037451 67 RPRTPVFDTPNANLSTIYFDS 87 (220)
Q Consensus 67 ~P~~P~~~V~~~~v~~f~~~~ 87 (220)
.++.|.|.+++++...|+-++
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~G 57 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPEG 57 (192)
T ss_pred CCCCCCEEEeccEEEEECCCC
Confidence 356799999999988887653
No 18
>PRK05529 cell division protein FtsQ; Provisional
Probab=56.72 E-value=21 Score=30.40 Aligned_cols=44 Identities=11% Similarity=0.036 Sum_probs=27.3
Q ss_pred CCEEEecceeeeeEEcCC------------C-C--------------eeeEEEEEEEEEecCCCeeeEEEec
Q 037451 70 TPVFDTPNANLSTIYFDS------------P-E--------------YFNGDFTFLANFSNPNRKIGARFEF 114 (220)
Q Consensus 70 ~P~~~V~~~~v~~f~~~~------------~-~--------------~l~~~~~~~l~v~NPN~~~~i~Y~~ 114 (220)
.|.|.|+++.|++-..-+ + + .+-.-=+++++-+.|| .+.|...+
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~-tl~I~V~E 128 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPG-TIVVRVVE 128 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCC-EEEEEEEE
Confidence 488999999887654321 0 1 1112235667788999 67777754
No 19
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=55.17 E-value=5.9 Score=22.82 Aligned_cols=15 Identities=7% Similarity=0.332 Sum_probs=10.0
Q ss_pred HHHHHHHHHhheeee
Q 037451 50 LILIFFGIATLIIFL 64 (220)
Q Consensus 50 ~l~l~lgi~~li~~l 64 (220)
.++.+++++++++|+
T Consensus 10 ~vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 10 GVVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHH
Confidence 345566777777775
No 20
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=51.96 E-value=20 Score=24.01 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=11.8
Q ss_pred HHHHHhheeeeEEecC
Q 037451 54 FFGIATLIIFLVIRPR 69 (220)
Q Consensus 54 ~lgi~~li~~lvl~P~ 69 (220)
+.+.+..+.|++++|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 3444567889999998
No 21
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=50.70 E-value=47 Score=24.74 Aligned_cols=26 Identities=8% Similarity=0.204 Sum_probs=19.4
Q ss_pred eEEEEEEEEEecCCCeeeEEEecEEEE
Q 037451 92 NGDFTFLANFSNPNRKIGARFEFLEIE 118 (220)
Q Consensus 92 ~~~~~~~l~v~NPN~~~~i~Y~~~~~~ 118 (220)
..++..++.+.||. .+++....+.+.
T Consensus 99 g~~~~~~~~l~NPS-~~ti~lG~v~~~ 124 (125)
T PF12505_consen 99 GINLNATVTLPNPS-PLTIDLGNVTLN 124 (125)
T ss_pred cEEEEEEEEEcCCC-eEEEEeccEEEe
Confidence 56788888999999 677766665543
No 22
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=49.74 E-value=22 Score=29.17 Aligned_cols=14 Identities=14% Similarity=0.137 Sum_probs=6.1
Q ss_pred ccchhhhHHHHHHH
Q 037451 35 NILIWCCATLCLIF 48 (220)
Q Consensus 35 ~~~~~C~~~l~~~~ 48 (220)
+++.|++..+|+++
T Consensus 44 s~~~~~~~~~~~~~ 57 (200)
T PF05473_consen 44 SPCACFLFIICGIL 57 (200)
T ss_pred CCcccHHHHHHHHH
Confidence 44333344455554
No 23
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=49.37 E-value=64 Score=25.90 Aligned_cols=36 Identities=11% Similarity=0.289 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhheeeeEEecCCCEEEec
Q 037451 39 WCCATLCLIFSLILIFFGIATLIIFLVIRPRTPVFDTP 76 (220)
Q Consensus 39 ~C~~~l~~~~~~l~l~lgi~~li~~lvl~P~~P~~~V~ 76 (220)
+...++++.+.+++++++++.+-.+ +.+..|..++.
T Consensus 7 R~N~vfs~~~~vl~~l~~~~~~s~~--~~~~~~~~~i~ 42 (175)
T PF04573_consen 7 RLNAVFSFALTVLAFLAALIFLSSY--FHPPSPSVSIS 42 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--ccCCCCceEEE
Confidence 4555565555444343333333333 55555554443
No 24
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=47.97 E-value=1.8e+02 Score=24.98 Aligned_cols=18 Identities=17% Similarity=0.075 Sum_probs=12.7
Q ss_pred eeeEEEEEEEEEecCCCe
Q 037451 90 YFNGDFTFLANFSNPNRK 107 (220)
Q Consensus 90 ~l~~~~~~~l~v~NPN~~ 107 (220)
.+..+=+++++++|.|..
T Consensus 83 ~i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 83 VIQSSRNVTLNARNENGS 100 (264)
T ss_pred EEEecCceEEEEecCCCc
Confidence 455555677888888865
No 25
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=45.91 E-value=23 Score=35.25 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=16.7
Q ss_pred CCCCCccccchhhhHHHHHHHHHHHHHHHHHhh
Q 037451 28 HPRPRQTNILIWCCATLCLIFSLILIFFGIATL 60 (220)
Q Consensus 28 ~~~~~r~~~~~~C~~~l~~~~~~l~l~lgi~~l 60 (220)
+++.+|+..|.++|+-++.+++++++++|++..
T Consensus 128 ~~~~~~~~~c~R~~l~~~L~~~~~~il~g~i~a 160 (806)
T PF05478_consen 128 HQRDKKNDACRRGCLGILLLLLTLIILFGVICA 160 (806)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 344444434444444444455556666676653
No 26
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=45.30 E-value=13 Score=29.22 Aligned_cols=18 Identities=22% Similarity=0.552 Sum_probs=14.3
Q ss_pred HHHHHHHHHhheeeeEEe
Q 037451 50 LILIFFGIATLIIFLVIR 67 (220)
Q Consensus 50 ~l~l~lgi~~li~~lvl~ 67 (220)
+=+-.+||+++++|.+++
T Consensus 86 mPlYtiGI~~f~lY~l~K 103 (152)
T PF15361_consen 86 MPLYTIGIVLFILYTLFK 103 (152)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 455788999999998776
No 27
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=44.97 E-value=25 Score=24.62 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=0.5
Q ss_pred CCCCCCCCCCCCCcccc
Q 037451 20 PRKPPVLHHPRPRQTNI 36 (220)
Q Consensus 20 ~~~~~~~~~~~~~r~~~ 36 (220)
-++|-|...|+.|-+=|
T Consensus 11 e~pp~ysa~p~~r~~iP 27 (93)
T PF08999_consen 11 ERPPDYSAAPRGRFGIP 27 (93)
T ss_dssp ----------------S
T ss_pred cCCCccccCCCCccCCC
Confidence 34667777777654444
No 28
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=44.56 E-value=33 Score=21.29 Aligned_cols=22 Identities=14% Similarity=0.452 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhheeeeEEecC
Q 037451 48 FSLILIFFGIATLIIFLVIRPR 69 (220)
Q Consensus 48 ~~~l~l~lgi~~li~~lvl~P~ 69 (220)
+++..+++|+....+|..|-|-
T Consensus 12 i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 12 ITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred HHHHHHHHHHhhheeeeccCCc
Confidence 3456678899999999999873
No 29
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=43.45 E-value=53 Score=23.49 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=34.4
Q ss_pred eeEEEEEEEEEecCCCee--eEEEecEEEEEEECCEEeecc--cCCCeeecCCCceEEEEEEE
Q 037451 91 FNGDFTFLANFSNPNRKI--GARFEFLEIELLFFNRLISTQ--IVQPFSQQPREQRLESVHMI 149 (220)
Q Consensus 91 l~~~~~~~l~v~NPN~~~--~i~Y~~~~~~v~Y~g~~lg~~--~vp~f~q~~~~t~~v~~~l~ 149 (220)
+.-++++.+++.||.... .+...=....+.|.|...... .......+++++..+.+.+.
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 445799999999987321 111111345668888754322 34566778888887776664
No 30
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=42.39 E-value=13 Score=27.71 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=8.0
Q ss_pred HhheeeeEEecCC
Q 037451 58 ATLIIFLVIRPRT 70 (220)
Q Consensus 58 ~~li~~lvl~P~~ 70 (220)
+++++||.+||..
T Consensus 12 ~~~i~yf~iRPQk 24 (113)
T PRK06531 12 MLGLIFFMQRQQK 24 (113)
T ss_pred HHHHHHheechHH
Confidence 3344566799963
No 31
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=40.31 E-value=45 Score=25.68 Aligned_cols=15 Identities=7% Similarity=0.067 Sum_probs=10.0
Q ss_pred EEecEEEEEEECCEE
Q 037451 111 RFEFLEIELLFFNRL 125 (220)
Q Consensus 111 ~Y~~~~~~v~Y~g~~ 125 (220)
+|=..++.+.+++..
T Consensus 63 ~ylk~~i~l~~~~~~ 77 (142)
T PRK07718 63 NFIRIQFKIETDSKK 77 (142)
T ss_pred CEEEEEEEEEECCHH
Confidence 466677777777654
No 32
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=40.30 E-value=31 Score=21.16 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhheeeeEEec
Q 037451 48 FSLILIFFGIATLIIFLVIRP 68 (220)
Q Consensus 48 ~~~l~l~lgi~~li~~lvl~P 68 (220)
+++..+++|+....+|..|-|
T Consensus 9 i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 9 IFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHhhhhhheeCC
Confidence 345667788889999999987
No 33
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=39.14 E-value=37 Score=18.44 Aligned_cols=14 Identities=14% Similarity=0.282 Sum_probs=6.2
Q ss_pred HHHHHHHHHhheee
Q 037451 50 LILIFFGIATLIIF 63 (220)
Q Consensus 50 ~l~l~lgi~~li~~ 63 (220)
++++++-+++...|
T Consensus 12 vVLFILLIIiga~~ 25 (26)
T TIGR01732 12 VVLFILLVIVGAAF 25 (26)
T ss_pred HHHHHHHHHhheee
Confidence 33444444444444
No 34
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=38.89 E-value=2.3e+02 Score=23.52 Aligned_cols=39 Identities=8% Similarity=0.045 Sum_probs=31.7
Q ss_pred CeeeEEEEEEEEEecCCCeeeEEEec--EEEEEEECCEEeec
Q 037451 89 EYFNGDFTFLANFSNPNRKIGARFEF--LEIELLFFNRLIST 128 (220)
Q Consensus 89 ~~l~~~~~~~l~v~NPN~~~~i~Y~~--~~~~v~Y~g~~lg~ 128 (220)
..+...-+.++.++=|| ++.+.+.. .+..++|+|..+.-
T Consensus 35 qklq~~~~~~v~v~RPd-klr~~~~gd~~~~~~~yDGkt~Tl 75 (214)
T PF09865_consen 35 QKLQFSSSGTVTVQRPD-KLRIDRRGDGADREFYYDGKTFTL 75 (214)
T ss_pred ceEEEEEEEEEEEeCCC-eEEEEEEcCCcceEEEECCCEEEE
Confidence 45777778899999999 89999954 67889999987654
No 35
>CHL00020 psbN photosystem II protein N
Probab=38.62 E-value=42 Score=20.58 Aligned_cols=22 Identities=0% Similarity=0.084 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhheeeeEEecC
Q 037451 48 FSLILIFFGIATLIIFLVIRPR 69 (220)
Q Consensus 48 ~~~l~l~lgi~~li~~lvl~P~ 69 (220)
+++..+++|+....+|..|-|-
T Consensus 9 i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 9 IFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred HHHHHHHHHhhheeeeeccCCc
Confidence 3456677899999999998873
No 36
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=38.52 E-value=33 Score=18.25 Aligned_cols=11 Identities=18% Similarity=-0.004 Sum_probs=4.4
Q ss_pred HHHHHHHhhee
Q 037451 52 LIFFGIATLII 62 (220)
Q Consensus 52 ~l~lgi~~li~ 62 (220)
++++-+++.+.
T Consensus 12 LFILLiIvG~s 22 (24)
T PF09680_consen 12 LFILLIIVGAS 22 (24)
T ss_pred HHHHHHHhcce
Confidence 33344444443
No 37
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=38.25 E-value=27 Score=27.49 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=14.8
Q ss_pred HHHHHHHhheeeeEEecCCCE
Q 037451 52 LIFFGIATLIIFLVIRPRTPV 72 (220)
Q Consensus 52 ~l~lgi~~li~~lvl~P~~P~ 72 (220)
.++++++++++|+..|.+.=.
T Consensus 61 ~ill~il~lvf~~c~r~kktd 81 (154)
T PF04478_consen 61 PILLGILALVFIFCIRRKKTD 81 (154)
T ss_pred HHHHHHHHhheeEEEecccCc
Confidence 344567788888888987533
No 38
>PTZ00116 signal peptidase; Provisional
Probab=37.10 E-value=1.1e+02 Score=24.85 Aligned_cols=81 Identities=9% Similarity=0.000 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhheeeeEEecCCCEEEecceeeeeEEcCCC-----CeeeEEEEEEEEE-ecCCCeeeEEE
Q 037451 39 WCCATLCLIFSLILIFFGIATLIIFLVIRPRTPVFDTPNANLSTIYFDSP-----EYFNGDFTFLANF-SNPNRKIGARF 112 (220)
Q Consensus 39 ~C~~~l~~~~~~l~l~lgi~~li~~lvl~P~~P~~~V~~~~v~~f~~~~~-----~~l~~~~~~~l~v-~NPN~~~~i~Y 112 (220)
+-..++|+.+++++++.++..+.-.+.+....|..+++-.+|.+|...+. ..++.++++.|+- -|=|.|.-+-|
T Consensus 7 R~Nal~~f~~~vLa~l~~~~~~s~~f~~~~~~~~~~i~v~~V~~~~~~~~~~~D~a~i~fdl~~DL~~lfnWNtKqlFvy 86 (185)
T PTZ00116 7 RLNVLSYSMALCFLILCLFNYGTSFYLFDEKEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNLKQLFLY 86 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCceeeEEEeecccccccCCCCceeEEEEEeeccCchhcCCccccEEEEE
Confidence 34456666654433333222222222222345656666556667764332 2444444444442 46666655544
Q ss_pred ecEEEEEEECC
Q 037451 113 EFLEIELLFFN 123 (220)
Q Consensus 113 ~~~~~~v~Y~g 123 (220)
+.+.|.+
T Consensus 87 ----v~a~Y~t 93 (185)
T PTZ00116 87 ----VLVTYET 93 (185)
T ss_pred ----EEEEEcC
Confidence 4455654
No 39
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=36.83 E-value=40 Score=21.86 Aligned_cols=19 Identities=26% Similarity=0.586 Sum_probs=12.0
Q ss_pred HHHHHHHHhheeeeEEecC
Q 037451 51 ILIFFGIATLIIFLVIRPR 69 (220)
Q Consensus 51 l~l~lgi~~li~~lvl~P~ 69 (220)
++.++.++++++|+.-||+
T Consensus 38 l~~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 38 LAAVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHHHhheeEEeccCC
Confidence 3444455567778888874
No 40
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=36.30 E-value=23 Score=28.05 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=12.1
Q ss_pred HHHHHHHhheeeeEEecC
Q 037451 52 LIFFGIATLIIFLVIRPR 69 (220)
Q Consensus 52 ~l~lgi~~li~~lvl~P~ 69 (220)
++++|+++.++|+.+||-
T Consensus 12 l~l~~~~~y~~W~~~rpV 29 (157)
T PF06092_consen 12 LFLLACILYFLWLTLRPV 29 (157)
T ss_pred HHHHHHHHHhhhhccCCe
Confidence 344454558888889984
No 41
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=34.31 E-value=61 Score=19.47 Aligned_cols=19 Identities=26% Similarity=0.731 Sum_probs=12.6
Q ss_pred HHHHHHHHhheeeeEEecC
Q 037451 51 ILIFFGIATLIIFLVIRPR 69 (220)
Q Consensus 51 l~l~lgi~~li~~lvl~P~ 69 (220)
+++++-++..++|+.+..+
T Consensus 28 ~i~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 28 VILFFPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHHHHHhheEEEeCC
Confidence 3445667777888877653
No 42
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.11 E-value=27 Score=26.17 Aligned_cols=14 Identities=14% Similarity=-0.028 Sum_probs=5.7
Q ss_pred cccchhhhHHHHHH
Q 037451 34 TNILIWCCATLCLI 47 (220)
Q Consensus 34 ~~~~~~C~~~l~~~ 47 (220)
..||.-|-=..|..
T Consensus 86 k~wWkn~Km~~il~ 99 (116)
T KOG0860|consen 86 KMWWKNCKMRIILG 99 (116)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444333433
No 43
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=34.09 E-value=1.8e+02 Score=27.52 Aligned_cols=67 Identities=9% Similarity=-0.016 Sum_probs=32.6
Q ss_pred EEEecEEEEEEECCEEeecccCCCeeecCCCceEEEEEEEeeeeecCHHHHHHHHHhhcCCeEEEEEEEEEE
Q 037451 110 ARFEFLEIELLFFNRLISTQIVQPFSQQPREQRLESVHMISSLVFMPQDHAVELRKQVQNNRINYNIRASFK 181 (220)
Q Consensus 110 i~Y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~v~~~l~~~~v~l~~~~~~~l~~d~~~G~v~l~v~~~~~ 181 (220)
+..+++++.+ |+|..=+.+.+.. ......+++....+++++.+-.......+.-.|...+++.+++.
T Consensus 468 l~l~~l~~~l-~~G~~~~~~~ld~----~~~~~~~~~~~~~~~v~l~~Ll~~~~~~~~l~G~~~~~~~l~g~ 534 (604)
T PF05170_consen 468 LTLDPLSAKL-YGGSLSGSASLDA----RQDPPQYSLNLNLRGVQLQPLLQDLALPDPLSGTGDLNLDLTGQ 534 (604)
T ss_pred EEEeeeeEec-CCcEEEEEEEEec----cCCCccEEEeeeeCCcchHHHHhhhccccCceEEEEEEEEEEeC
Confidence 4445566666 7777666666542 22233455556666666532111111112234555555555443
No 44
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=33.76 E-value=74 Score=24.07 Aligned_cols=8 Identities=25% Similarity=0.584 Sum_probs=4.3
Q ss_pred EEEEEECC
Q 037451 116 EIELLFFN 123 (220)
Q Consensus 116 ~~~v~Y~g 123 (220)
++.|.|.|
T Consensus 83 ~i~V~Y~G 90 (131)
T PF03100_consen 83 EIPVVYTG 90 (131)
T ss_dssp EEEEEEES
T ss_pred EEEEEECC
Confidence 45555555
No 45
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=32.89 E-value=2.2e+02 Score=21.63 Aligned_cols=54 Identities=11% Similarity=0.072 Sum_probs=36.7
Q ss_pred eeeEEEEEEEEEecCCCeeeEEEecEEEEEEE--CCEEeecccCCCeeecCCCceEEEE
Q 037451 90 YFNGDFTFLANFSNPNRKIGARFEFLEIELLF--FNRLISTQIVQPFSQQPREQRLESV 146 (220)
Q Consensus 90 ~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~Y--~g~~lg~~~vp~f~q~~~~t~~v~~ 146 (220)
....+|+++|++||-+.+-.++-.+.+ +| .|..+-+.--.|.+.++-.+..+-+
T Consensus 20 ~~~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV 75 (125)
T PF11322_consen 20 HRPFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKPIYLKPLATTEFVV 75 (125)
T ss_pred CceEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCCeEcCCCceEEEEE
Confidence 456789999999999887777664432 33 3555555444677888887776543
No 46
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=32.71 E-value=1.1e+02 Score=20.75 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=29.9
Q ss_pred EEEEEEEEEecCCCeeeEEEecEEEEEEECCEEeecccCCCeeecCCCceEEEEEE
Q 037451 93 GDFTFLANFSNPNRKIGARFEFLEIELLFFNRLISTQIVQPFSQQPREQRLESVHM 148 (220)
Q Consensus 93 ~~~~~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~v~~~l 148 (220)
-.+.+++.++|--.. . -..+.+.++..|..++...++.+. ++.+..+...+
T Consensus 19 ~~~~i~~~V~N~G~~-~--~~~~~v~~~~~~~~~~~~~i~~L~--~g~~~~v~~~~ 69 (101)
T PF07705_consen 19 EPVTITVTVKNNGTA-D--AENVTVRLYLDGNSVSTVTIPSLA--PGESETVTFTW 69 (101)
T ss_dssp SEEEEEEEEEE-SSS----BEEEEEEEEETTEEEEEEEESEB---TTEEEEEEEEE
T ss_pred CEEEEEEEEEECCCC-C--CCCEEEEEEECCceeccEEECCcC--CCcEEEEEEEE
Confidence 467777889996532 1 345678888888888666664433 34444444433
No 47
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=31.22 E-value=76 Score=23.38 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=30.4
Q ss_pred cCCCeeeEEEec-EEEEEEECCEEeecccCCCeeecCCCceE
Q 037451 103 NPNRKIGARFEF-LEIELLFFNRLISTQIVQPFSQQPREQRL 143 (220)
Q Consensus 103 NPN~~~~i~Y~~-~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~ 143 (220)
||| ++=+.|++ +.+++.|.|..+.-+.-..|.+..-.|..
T Consensus 40 ~pN-Yvf~~FEnG~tvsv~~~gs~~kI~~~Dd~r~RDLgTHP 80 (121)
T PF06919_consen 40 TPN-YVFMRFENGITVSVTYNGSIFKIGLDDDHRERDLGTHP 80 (121)
T ss_pred CCC-EEEEEecCCCEEEEEecCcEEEEEecCchhhcccCCCc
Confidence 999 99999987 79999999987766665666655544433
No 48
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=30.99 E-value=2.6e+02 Score=21.84 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=13.0
Q ss_pred eEEEecEEEEEEECCEEe
Q 037451 109 GARFEFLEIELLFFNRLI 126 (220)
Q Consensus 109 ~i~Y~~~~~~v~Y~g~~l 126 (220)
+.+|=.+++.+.+.+...
T Consensus 77 ~~rylkv~i~L~~~~~~~ 94 (162)
T PRK07021 77 ADRVLYVGLTLRLPDEAT 94 (162)
T ss_pred CceEEEEEEEEEECCHHH
Confidence 467878888888876544
No 49
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=30.88 E-value=68 Score=25.21 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhheeeeEEecC
Q 037451 49 SLILIFFGIATLIIFLVIRPR 69 (220)
Q Consensus 49 ~~l~l~lgi~~li~~lvl~P~ 69 (220)
++|++++.++++++|-+=+..
T Consensus 17 ~Ll~lLl~cgiGcvwhwkhr~ 37 (158)
T PF11770_consen 17 SLLLLLLLCGIGCVWHWKHRD 37 (158)
T ss_pred HHHHHHHHHhcceEEEeeccC
Confidence 344555666678888765543
No 50
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=30.78 E-value=56 Score=27.86 Aligned_cols=32 Identities=16% Similarity=0.381 Sum_probs=24.2
Q ss_pred HHHHHHHHhheeeeEEecCCCEEEecceeeee
Q 037451 51 ILIFFGIATLIIFLVIRPRTPVFDTPNANLST 82 (220)
Q Consensus 51 l~l~lgi~~li~~lvl~P~~P~~~V~~~~v~~ 82 (220)
.++++++.++++|....++.|-|.+..+++++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 38 YLVLLLLVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHHHHHHHheehhhhcCCccceEEEEec
Confidence 34455666777788888888888888888876
No 51
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=30.60 E-value=75 Score=25.70 Aligned_cols=21 Identities=14% Similarity=0.543 Sum_probs=14.6
Q ss_pred HHHHHHHHhheeeeEEecCCC
Q 037451 51 ILIFFGIATLIIFLVIRPRTP 71 (220)
Q Consensus 51 l~l~lgi~~li~~lvl~P~~P 71 (220)
+.+++++++++++.+++|..+
T Consensus 11 la~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 11 LALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHhheeeEEEccCCC
Confidence 344556667777788999866
No 52
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=29.78 E-value=75 Score=21.90 Aligned_cols=7 Identities=29% Similarity=0.686 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 037451 52 LIFFGIA 58 (220)
Q Consensus 52 ~l~lgi~ 58 (220)
++++|++
T Consensus 55 llv~G~~ 61 (82)
T PF11239_consen 55 LLVAGVV 61 (82)
T ss_pred HHHHHHH
Confidence 3344443
No 53
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.26 E-value=23 Score=26.80 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=8.5
Q ss_pred HHHHHhheeeeEEec-CCCEEEecc
Q 037451 54 FFGIATLIIFLVIRP-RTPVFDTPN 77 (220)
Q Consensus 54 ~lgi~~li~~lvl~P-~~P~~~V~~ 77 (220)
++|++++|+|++-|= |.+...++.
T Consensus 77 vIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 77 VIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCC
Confidence 455566666766432 334444443
No 54
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=29.13 E-value=23 Score=19.11 Aligned_cols=19 Identities=11% Similarity=0.443 Sum_probs=11.0
Q ss_pred HHHHHHHHhheeeeEEecC
Q 037451 51 ILIFFGIATLIIFLVIRPR 69 (220)
Q Consensus 51 l~l~lgi~~li~~lvl~P~ 69 (220)
+++.+++++..+|-.++|.
T Consensus 5 ~~v~~~L~~YL~~aLl~PE 23 (25)
T PF09604_consen 5 GIVAVALFVYLFYALLRPE 23 (25)
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 3444555555555567775
No 55
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=29.10 E-value=21 Score=22.11 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=9.2
Q ss_pred HHHHHHhheeeeEEecCC
Q 037451 53 IFFGIATLIIFLVIRPRT 70 (220)
Q Consensus 53 l~lgi~~li~~lvl~P~~ 70 (220)
+++++.++++|.+++|+.
T Consensus 17 ~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 17 LFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHcccc
Confidence 333444444444677863
No 56
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=28.87 E-value=64 Score=23.91 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=16.4
Q ss_pred EEEEEEEecCCC----eeeEEEec--EEEEEEECCE
Q 037451 95 FTFLANFSNPNR----KIGARFEF--LEIELLFFNR 124 (220)
Q Consensus 95 ~~~~l~v~NPN~----~~~i~Y~~--~~~~v~Y~g~ 124 (220)
.--++-+.|||+ .+.++|++ ..+.+.|+|.
T Consensus 51 ~~~t~lF~~~~~~~~~~v~l~Yds~~~~Vtv~~~~~ 86 (109)
T PF06129_consen 51 LLNTVLFLNPDKPVSSQVILYYDSRSGTVTVAYKNK 86 (109)
T ss_pred ceeeEEecCCCcccccceEEEEccCCCeEEEEECCc
Confidence 334566778873 35566654 3345555543
No 57
>PHA03029 hypothetical protein; Provisional
Probab=28.57 E-value=67 Score=22.14 Aligned_cols=37 Identities=14% Similarity=0.324 Sum_probs=25.1
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhheeeeEEecCC
Q 037451 33 QTNILIWCCATLCLIFSLILIFFGIATLIIFLVIRPRT 70 (220)
Q Consensus 33 r~~~~~~C~~~l~~~~~~l~l~lgi~~li~~lvl~P~~ 70 (220)
||+++-|..-++++++ -+.+.+|.-.+-.|.+..|..
T Consensus 48 rrkg~ywflnf~fwll-p~al~a~fyffsiw~imnpqa 84 (92)
T PHA03029 48 RRKGLYWFLNFLFWLL-PFALAAAFYFFSIWFIMNPQA 84 (92)
T ss_pred HhhhHHHHHHHHHHHH-HHHHHHHHHHHHhhheecccc
Confidence 4556678888888774 344555555667788888864
No 58
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.55 E-value=1.4e+02 Score=25.06 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=23.5
Q ss_pred EEEEecCCCeeeEEEecEEEEEEECCEEeecccCCCeeecCCCceE
Q 037451 98 LANFSNPNRKIGARFEFLEIELLFFNRLISTQIVQPFSQQPREQRL 143 (220)
Q Consensus 98 ~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~ 143 (220)
.|+++||- -.-+.+...++.. +|..++ ....++.++++..
T Consensus 166 ~l~v~Npt-py~vtl~~~~l~~--~~~~~~---~~~~mv~P~s~~~ 205 (235)
T COG3121 166 LLTVKNPT-PYYVTLANLTLNV--GGRKLG---LNSGMVAPFSTRQ 205 (235)
T ss_pred EEEEECCC-CcEEEEEEEEEee--CceecC---CCcceECCCccce
Confidence 58899999 4556665555555 666665 3334444444443
No 59
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=27.88 E-value=41 Score=28.08 Aligned_cols=7 Identities=29% Similarity=0.387 Sum_probs=3.2
Q ss_pred HHHHHhh
Q 037451 161 VELRKQV 167 (220)
Q Consensus 161 ~~l~~d~ 167 (220)
.+|.+.+
T Consensus 153 ~Em~~Ai 159 (217)
T PF07423_consen 153 NEMLKAI 159 (217)
T ss_pred HHHHHHH
Confidence 4444444
No 60
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=27.58 E-value=70 Score=28.05 Aligned_cols=49 Identities=14% Similarity=0.290 Sum_probs=26.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhheeee---EEecCCCEEEecceeeeeEEcC
Q 037451 36 ILIWCCATLCLIFSLILIFFGIATLIIFL---VIRPRTPVFDTPNANLSTIYFD 86 (220)
Q Consensus 36 ~~~~C~~~l~~~~~~l~l~lgi~~li~~l---vl~P~~P~~~V~~~~v~~f~~~ 86 (220)
.+.|+--+++.++ +-+++++++++++|. .+.|+.|++. ++..=.++.+.
T Consensus 41 ~~sW~~IllfYiv-FY~~la~lf~~~~~~~~~tidp~~P~~~-~~~~~PGl~~~ 92 (300)
T KOG3927|consen 41 GSSWAKILLFYIV-FYGVLAALFAGCMWFMLQTIDPKVPKYK-DSGANPGLSFR 92 (300)
T ss_pred cccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCccc-ccCCCCceeec
Confidence 3456665454443 223444444444454 4789999999 44332444443
No 61
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=27.21 E-value=67 Score=27.02 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=9.0
Q ss_pred HHHhheeeeEEec
Q 037451 56 GIATLIIFLVIRP 68 (220)
Q Consensus 56 gi~~li~~lvl~P 68 (220)
.+++.+.|+.+||
T Consensus 236 l~~Ia~aW~~yRP 248 (248)
T PF07787_consen 236 LLTIALAWLFYRP 248 (248)
T ss_pred HHHHHHhheeeCc
Confidence 3445677888887
No 62
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=27.06 E-value=2.8e+02 Score=21.03 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=57.2
Q ss_pred CCEEEecceeeeeEEcCCCCeeeEEEEEEEEEecCCCeeeEEEecEEEEEEECC--EEeecccCCCeeecCCCceEEEEE
Q 037451 70 TPVFDTPNANLSTIYFDSPEYFNGDFTFLANFSNPNRKIGARFEFLEIELLFFN--RLISTQIVQPFSQQPREQRLESVH 147 (220)
Q Consensus 70 ~P~~~V~~~~v~~f~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~Y~g--~~lg~~~vp~f~q~~~~t~~v~~~ 147 (220)
.|.+.+.++..... +..-.+.+.++||+. .-+.=-.+++.|+..| ..+.......+...+.+.-.+.+.
T Consensus 27 ~p~L~l~~v~~~~~--------n~~~~i~~~l~N~~~-~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~ 97 (140)
T PF11797_consen 27 PPKLKLGKVKPGQI--------NGRNVIQANLQNPQP-AILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPIP 97 (140)
T ss_pred CcccEEeeeeeeEE--------CCeeEEEEEEECCCc-hhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEeEec
Confidence 56666666665543 445666788899882 2222224677777766 467777778888888886555433
Q ss_pred EEeeeeecCHHHHHHHHHhhcCCeEEEEEEEEEEE
Q 037451 148 MISSLVFMPQDHAVELRKQVQNNRINYNIRASFKV 182 (220)
Q Consensus 148 l~~~~v~l~~~~~~~l~~d~~~G~v~l~v~~~~~v 182 (220)
+.+ +.+..|...+.+.++..-
T Consensus 98 ~~~--------------~~lk~G~Y~l~~~~~~~~ 118 (140)
T PF11797_consen 98 LGG--------------KKLKPGKYTLKITAKSGK 118 (140)
T ss_pred CCC--------------cCccCCEEEEEEEEEcCC
Confidence 321 135788888887776443
No 63
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=26.45 E-value=29 Score=21.67 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=9.3
Q ss_pred HHHHHHhheeeeEEecCC
Q 037451 53 IFFGIATLIIFLVIRPRT 70 (220)
Q Consensus 53 l~lgi~~li~~lvl~P~~ 70 (220)
+++++.+++++-+++|+.
T Consensus 18 ~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 18 YLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 334444444444677863
No 64
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=26.01 E-value=90 Score=22.55 Aligned_cols=14 Identities=21% Similarity=0.486 Sum_probs=6.3
Q ss_pred HHHHHhheeee-EEe
Q 037451 54 FFGIATLIIFL-VIR 67 (220)
Q Consensus 54 ~lgi~~li~~l-vl~ 67 (220)
++.++.+|.|+ ++|
T Consensus 74 IlVily~IyYFVILR 88 (101)
T PF06024_consen 74 ILVILYAIYYFVILR 88 (101)
T ss_pred HHHHHhhheEEEEEe
Confidence 33333445555 454
No 65
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=25.79 E-value=1.1e+02 Score=19.37 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q 037451 44 LCLIFSLILIFFGIATL 60 (220)
Q Consensus 44 l~~~~~~l~l~lgi~~l 60 (220)
-..++..+++++|++++
T Consensus 17 gGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 17 GGLIFAGVLFILGILII 33 (50)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 34445556677776654
No 66
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=25.06 E-value=28 Score=22.93 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=9.7
Q ss_pred HHHHHhheeeeEEecC
Q 037451 54 FFGIATLIIFLVIRPR 69 (220)
Q Consensus 54 ~lgi~~li~~lvl~P~ 69 (220)
+..+.++++|.+++|+
T Consensus 18 ~~l~fiavi~~ayr~~ 33 (60)
T COG4736 18 FTLFFIAVIYFAYRPG 33 (60)
T ss_pred HHHHHHHHHHHHhccc
Confidence 3344455666678886
No 67
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=25.00 E-value=2.4e+02 Score=19.55 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=31.0
Q ss_pred EEEEEEEEEecCCCeeeEEEecEEEEEEECCEEeecccCCCeeecCCCceEEEEEEE
Q 037451 93 GDFTFLANFSNPNRKIGARFEFLEIELLFFNRLISTQIVQPFSQQPREQRLESVHMI 149 (220)
Q Consensus 93 ~~~~~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~v~~~l~ 149 (220)
......++++|-. ....+|.=.... ..+..+. ..-++....++.+..+++++.
T Consensus 20 ~~~~~~v~l~N~s-~~p~~f~v~~~~--~~~~~~~-v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 20 QTYSRTVTLTNTS-SIPARFRVRQPE--SLSSFFS-VEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred CEEEEEEEEEECC-CCCEEEEEEeCC--cCCCCEE-EECCCCEECCCCEEEEEEEEE
Confidence 4567788999988 556666421100 0111121 123455688888888888887
No 68
>PRK11677 hypothetical protein; Provisional
Probab=24.87 E-value=53 Score=25.28 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhheee
Q 037451 46 LIFSLILIFFGIATLIIF 63 (220)
Q Consensus 46 ~~~~~l~l~lgi~~li~~ 63 (220)
|++.++.+++|++++++.
T Consensus 3 W~~a~i~livG~iiG~~~ 20 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVA 20 (134)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455666676666554
No 69
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=24.50 E-value=1.1e+02 Score=23.81 Aligned_cols=29 Identities=21% Similarity=0.541 Sum_probs=15.7
Q ss_pred hhhHHHHHHH--HHHHHHHHHHhheeeeEEecC
Q 037451 39 WCCATLCLIF--SLILIFFGIATLIIFLVIRPR 69 (220)
Q Consensus 39 ~C~~~l~~~~--~~l~l~lgi~~li~~lvl~P~ 69 (220)
.||...|.++ =++++++|+++.++ -|.|+
T Consensus 34 rl~s~Sg~~l~lG~lvllvGiaMAv~--GYwp~ 64 (141)
T PF10177_consen 34 RLCSPSGLFLLLGILVLLVGIAMAVL--GYWPK 64 (141)
T ss_pred EEecHHHHHHHHHHHHHHHhhHhhee--ecccc
Confidence 4554444443 24566777766554 24566
No 70
>PRK05751 preprotein translocase subunit SecB; Validated
Probab=23.98 E-value=3.6e+02 Score=21.23 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=12.9
Q ss_pred CCEEEecceeeeeEEcCC
Q 037451 70 TPVFDTPNANLSTIYFDS 87 (220)
Q Consensus 70 ~P~~~V~~~~v~~f~~~~ 87 (220)
.|.|.+....+.++++-+
T Consensus 10 ~p~~~i~~~YiKDlSfE~ 27 (156)
T PRK05751 10 QPQFQIQRIYTKDLSFEN 27 (156)
T ss_pred CCcEEEEEEEEeeecccC
Confidence 477777777777777743
No 71
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=23.91 E-value=88 Score=28.52 Aligned_cols=9 Identities=22% Similarity=0.704 Sum_probs=3.9
Q ss_pred hhhHHHHHH
Q 037451 39 WCCATLCLI 47 (220)
Q Consensus 39 ~C~~~l~~~ 47 (220)
.|||.-+.+
T Consensus 58 ~~~c~~~~~ 66 (406)
T PF04906_consen 58 RCCCLTWSL 66 (406)
T ss_pred CCcchHHHH
Confidence 344444444
No 72
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=23.89 E-value=69 Score=26.72 Aligned_cols=10 Identities=10% Similarity=0.155 Sum_probs=6.5
Q ss_pred eEEecCCCEE
Q 037451 64 LVIRPRTPVF 73 (220)
Q Consensus 64 lvl~P~~P~~ 73 (220)
-+++||....
T Consensus 181 K~~K~K~~~~ 190 (218)
T PF14283_consen 181 KFYKPKQEEK 190 (218)
T ss_pred EEeccccccc
Confidence 3788875544
No 73
>PRK00523 hypothetical protein; Provisional
Probab=23.66 E-value=81 Score=21.56 Aligned_cols=18 Identities=17% Similarity=0.133 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhhee
Q 037451 45 CLIFSLILIFFGIATLII 62 (220)
Q Consensus 45 ~~~~~~l~l~lgi~~li~ 62 (220)
++++.++.+++|++++.+
T Consensus 7 ~I~l~i~~li~G~~~Gff 24 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYF 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444556666665544
No 74
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=23.64 E-value=26 Score=26.15 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhheeeeEEe
Q 037451 38 IWCCATLCLIFSLILIFFGIATLIIFLVIR 67 (220)
Q Consensus 38 ~~C~~~l~~~~~~l~l~lgi~~li~~lvl~ 67 (220)
.+++.+..+.+++.++++|-++.+ |++|.
T Consensus 29 sra~~vagltvLa~LLiAGQa~Ta-Yfv~~ 57 (114)
T PF09307_consen 29 SRALKVAGLTVLACLLIAGQAVTA-YFVFQ 57 (114)
T ss_dssp ------------------------------
T ss_pred cchhHHHHHHHHHHHHHHhHHHHH-HHHHH
Confidence 345445555555556666655544 45665
No 75
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=23.61 E-value=3.5e+02 Score=21.30 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=19.8
Q ss_pred EEEecCCCeeeEEEecEEEEEEECCE-EeecccC
Q 037451 99 ANFSNPNRKIGARFEFLEIELLFFNR-LISTQIV 131 (220)
Q Consensus 99 l~v~NPN~~~~i~Y~~~~~~v~Y~g~-~lg~~~v 131 (220)
+.+.--|..+.+.|+.+-=++|=.|+ .++.+.+
T Consensus 76 F~vtD~~~~v~V~Y~GiLPDLFREGQgVVa~G~~ 109 (153)
T COG2332 76 FVVTDGNKSVTVSYEGILPDLFREGQGVVAEGQL 109 (153)
T ss_pred EEEecCCceEEEEEeccCchhhhcCCeEEEEEEe
Confidence 34445566678888776666666665 3444444
No 76
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=23.49 E-value=77 Score=26.37 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 037451 43 TLCLIFSLILIFFGIATL 60 (220)
Q Consensus 43 ~l~~~~~~l~l~lgi~~l 60 (220)
+.|+|++.++++++.+++
T Consensus 131 LIClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 131 LICLIIIAVLFLICTLLF 148 (227)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666555555554443
No 77
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.44 E-value=3e+02 Score=21.84 Aligned_cols=28 Identities=7% Similarity=0.040 Sum_probs=13.8
Q ss_pred EEEEEEecCCCeeeEEEecEEEEEEECC
Q 037451 96 TFLANFSNPNRKIGARFEFLEIELLFFN 123 (220)
Q Consensus 96 ~~~l~v~NPN~~~~i~Y~~~~~~v~Y~g 123 (220)
.+.+.+...+..+.+.|+.+-=++|=.|
T Consensus 79 ~v~F~vtD~~~~v~V~Y~GilPDlFrEG 106 (159)
T PRK13150 79 KVNFSLYDAEGSVTVSYEGILPDLFREG 106 (159)
T ss_pred EEEEEEEcCCcEEEEEEeccCCccccCC
Confidence 3444555555455555555444444444
No 78
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=23.31 E-value=71 Score=26.66 Aligned_cols=6 Identities=17% Similarity=0.257 Sum_probs=2.4
Q ss_pred HHHHHH
Q 037451 43 TLCLIF 48 (220)
Q Consensus 43 ~l~~~~ 48 (220)
+|=++|
T Consensus 15 iLNiaI 20 (217)
T PF07423_consen 15 ILNIAI 20 (217)
T ss_pred hHHHHH
Confidence 444443
No 79
>PRK01844 hypothetical protein; Provisional
Probab=23.08 E-value=86 Score=21.45 Aligned_cols=16 Identities=13% Similarity=0.335 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhee
Q 037451 47 IFSLILIFFGIATLII 62 (220)
Q Consensus 47 ~~~~l~l~lgi~~li~ 62 (220)
++.++.+++|++++.+
T Consensus 8 ~l~I~~li~G~~~Gff 23 (72)
T PRK01844 8 LVGVVALVAGVALGFF 23 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344556666665544
No 80
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.59 E-value=89 Score=21.26 Aligned_cols=15 Identities=7% Similarity=0.330 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhh
Q 037451 46 LIFSLILIFFGIATL 60 (220)
Q Consensus 46 ~~~~~l~l~lgi~~l 60 (220)
++++++.+++|++.+
T Consensus 7 il~ivl~ll~G~~~G 21 (71)
T COG3763 7 ILLIVLALLAGLIGG 21 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445566666665
No 81
>PRK13031 preprotein translocase subunit SecB; Provisional
Probab=22.57 E-value=3.8e+02 Score=20.99 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=10.8
Q ss_pred CCEEEecceeeeeEEcC
Q 037451 70 TPVFDTPNANLSTIYFD 86 (220)
Q Consensus 70 ~P~~~V~~~~v~~f~~~ 86 (220)
.|.|.++...+.++++.
T Consensus 6 ~p~f~I~~~YvKDlSFE 22 (149)
T PRK13031 6 QPQFQIQKVYVKDLSFS 22 (149)
T ss_pred CCeeEeeeEEeeeeccc
Confidence 36666666666666664
No 82
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=22.47 E-value=1.2e+02 Score=18.00 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=5.5
Q ss_pred HHHhheeeeEE
Q 037451 56 GIATLIIFLVI 66 (220)
Q Consensus 56 gi~~li~~lvl 66 (220)
-+..+|+|+++
T Consensus 22 ~imliif~f~l 32 (43)
T PF11395_consen 22 IIMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHHH
Confidence 33445566544
No 83
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=22.38 E-value=30 Score=30.28 Aligned_cols=17 Identities=24% Similarity=0.675 Sum_probs=10.8
Q ss_pred HHHHHHHHhheeeeEEe
Q 037451 51 ILIFFGIATLIIFLVIR 67 (220)
Q Consensus 51 l~l~lgi~~li~~lvl~ 67 (220)
+++++.++++|+||++|
T Consensus 264 aIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 264 AILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445556777788766
No 84
>PF07184 CTV_P33: Citrus tristeza virus P33 protein; InterPro: IPR010803 This family consists of several Citrus tristeza virus (CTV) P33 proteins. The function of P33 is unclear although it is known that the protein is not needed for virion formation [].
Probab=22.23 E-value=81 Score=26.04 Aligned_cols=24 Identities=29% Similarity=0.832 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhee
Q 037451 39 WCCATLCLIFSLILIFFGIATLII 62 (220)
Q Consensus 39 ~C~~~l~~~~~~l~l~lgi~~li~ 62 (220)
-||--.|.+.+.++++-|+.++|+
T Consensus 279 vccyavcvlvvs~limsgllaii~ 302 (303)
T PF07184_consen 279 VCCYAVCVLVVSLLIMSGLLAIIF 302 (303)
T ss_pred HHHHHHHHHHHHHHHHhcchheEe
Confidence 454456666666777778776654
No 85
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.04 E-value=98 Score=23.21 Aligned_cols=19 Identities=16% Similarity=0.467 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhheee
Q 037451 43 TLCLIFSLILIFFGIATLIIF 63 (220)
Q Consensus 43 ~l~~~~~~l~l~lgi~~li~~ 63 (220)
++|+++ ++++++++++..|
T Consensus 98 l~~~m~--~f~lV~~fi~~~~ 116 (118)
T KOG3385|consen 98 LLCWMA--VFSLVAFFILWVW 116 (118)
T ss_pred hHHHHH--HHHHHHHHHhhee
Confidence 445553 3344454444444
No 86
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=21.95 E-value=77 Score=26.84 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=9.1
Q ss_pred cchhhhHHHHHHH
Q 037451 36 ILIWCCATLCLIF 48 (220)
Q Consensus 36 ~~~~C~~~l~~~~ 48 (220)
+..||.|+++.++
T Consensus 41 ~~~~~va~~~~~l 53 (239)
T COG3736 41 RLAWRVAILFTLL 53 (239)
T ss_pred HHHHHHHHHHHHH
Confidence 5678877776664
No 87
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=21.65 E-value=75 Score=18.29 Aligned_cols=21 Identities=33% Similarity=0.733 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhheeee
Q 037451 44 LCLIFSLILIFFGIATLIIFL 64 (220)
Q Consensus 44 l~~~~~~l~l~lgi~~li~~l 64 (220)
+|.++=.++++-|+++.++|+
T Consensus 4 lCYiLDgiL~iYgiiiT~L~~ 24 (33)
T PF11628_consen 4 LCYILDGILFIYGIIITALYC 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHHHHHHHHHH
Confidence 456655667778888877764
No 88
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=21.62 E-value=88 Score=23.33 Aligned_cols=21 Identities=19% Similarity=0.645 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhheeeeEEecC
Q 037451 49 SLILIFFGIATLIIFLVIRPR 69 (220)
Q Consensus 49 ~~l~l~lgi~~li~~lvl~P~ 69 (220)
+++++.++++.++++|+++-.
T Consensus 69 i~LivSLaLVsFvIFLiiQTg 89 (128)
T PF15145_consen 69 IVLIVSLALVSFVIFLIIQTG 89 (128)
T ss_pred HHHHHHHHHHHHHHHheeecc
Confidence 345566677777778887753
No 89
>PHA02973 hypothetical protein; Provisional
Probab=21.21 E-value=2.6e+02 Score=20.37 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=28.1
Q ss_pred hheeeeEEecC-CCEEEecceeeeeEEcCCCCeeeEEEEEEEEEecCCCeeeEEEecEEEEEEEC
Q 037451 59 TLIIFLVIRPR-TPVFDTPNANLSTIYFDSPEYFNGDFTFLANFSNPNRKIGARFEFLEIELLFF 122 (220)
Q Consensus 59 ~li~~lvl~P~-~P~~~V~~~~v~~f~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~Y~ 122 (220)
++..|+-+.|. .-...|....-.+.. ++ .....++-+.||++.+ ...+.++|+
T Consensus 13 ~l~Y~fn~~pTNKmq~aV~~l~~e~~~-d~-----p~~l~t~lF~~~~~~~-----~~~v~~yyd 66 (102)
T PHA02973 13 LLCYFFNFKRTNKMDIGINPIKKIPWS-DN-----DHIFVSSLFHNKDKYL-----TGPMKLNYD 66 (102)
T ss_pred HHHHHhhccccchhhhhhhhccccccc-CC-----CceeEEEEecCCCCcc-----ccceEEEEc
Confidence 34445567774 455555555444421 22 2355567788988642 344555554
No 90
>PF08956 DUF1869: Domain of unknown function (DUF1869); InterPro: IPR015051 This domain is found in a set of hypothetical bacterial proteins. ; PDB: 1NEI_A.
Probab=20.99 E-value=1.2e+02 Score=19.85 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=11.0
Q ss_pred EEEEEEecCCCeeeEEEec
Q 037451 96 TFLANFSNPNRKIGARFEF 114 (220)
Q Consensus 96 ~~~l~v~NPN~~~~i~Y~~ 114 (220)
+++|++.|-|..+++.|+.
T Consensus 5 ~~~LTvTNn~NGVSVDk~~ 23 (60)
T PF08956_consen 5 EFTLTVTNNNNGVSVDKEF 23 (60)
T ss_dssp -EEEEEEETTT--EEEEEE
T ss_pred eEEEEEEeCCCceEeeccc
Confidence 3567787766577777754
No 91
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=20.92 E-value=80 Score=22.21 Aligned_cols=12 Identities=25% Similarity=0.609 Sum_probs=5.4
Q ss_pred HHHHHHHhheee
Q 037451 52 LIFFGIATLIIF 63 (220)
Q Consensus 52 ~l~lgi~~li~~ 63 (220)
++++++++.|+|
T Consensus 78 ~~f~~~v~yI~~ 89 (92)
T PF03908_consen 78 LFFLLVVLYILW 89 (92)
T ss_pred HHHHHHHHHHhh
Confidence 344444444443
No 92
>PHA03281 envelope glycoprotein E; Provisional
Probab=20.84 E-value=1.1e+02 Score=29.04 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCCC
Q 037451 1 PPINHQSPAPETEPL 15 (220)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (220)
||-+|++|++.+++-
T Consensus 524 P~~~~~~~s~~~p~~ 538 (642)
T PHA03281 524 PPEAGNPPAPSKPKE 538 (642)
T ss_pred CccCCCCCCCCCccc
Confidence 566788888887665
No 93
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.78 E-value=32 Score=29.85 Aligned_cols=17 Identities=24% Similarity=0.718 Sum_probs=8.9
Q ss_pred HHHHHHHHHhheeeeEE
Q 037451 50 LILIFFGIATLIIFLVI 66 (220)
Q Consensus 50 ~l~l~lgi~~li~~lvl 66 (220)
++++++.++++|+|+++
T Consensus 266 lvllil~vvliiLYiWl 282 (295)
T TIGR01478 266 LVLIILTVVLIILYIWL 282 (295)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555556665543
No 94
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=20.67 E-value=20 Score=19.51 Aligned_cols=19 Identities=16% Similarity=0.644 Sum_probs=10.6
Q ss_pred HHHHHHHHhheeeeEEecC
Q 037451 51 ILIFFGIATLIIFLVIRPR 69 (220)
Q Consensus 51 l~l~lgi~~li~~lvl~P~ 69 (220)
+++.+++++..+|-.++|.
T Consensus 4 ~~l~~~L~~YL~~aLl~PE 22 (26)
T TIGR02115 4 LVLAVGLFIYLFYALLRPE 22 (26)
T ss_pred HHHHHHHHHHHHHHHhCHH
Confidence 3444555555555567775
No 95
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=20.45 E-value=37 Score=25.15 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=11.0
Q ss_pred heeeeEEecC--CCEEEe--cceeeee
Q 037451 60 LIIFLVIRPR--TPVFDT--PNANLST 82 (220)
Q Consensus 60 li~~lvl~P~--~P~~~V--~~~~v~~ 82 (220)
+++||++-=+ .|.|.| ++-.+..
T Consensus 11 li~~Lv~~~r~~~~vf~i~f~dG~l~~ 37 (108)
T PF12321_consen 11 LIFWLVFVDRRGLPVFEIHFKDGRLRV 37 (108)
T ss_pred HHHHHHHccccCceEEEEEEECCcEEE
Confidence 6666654332 355544 3444443
No 96
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=20.20 E-value=1e+02 Score=24.81 Aligned_cols=16 Identities=25% Similarity=0.183 Sum_probs=11.8
Q ss_pred EEEecEEEEEEECCEE
Q 037451 110 ARFEFLEIELLFFNRL 125 (220)
Q Consensus 110 i~Y~~~~~~v~Y~g~~ 125 (220)
-+|-.+++.+.+.+..
T Consensus 102 ~ryLkv~i~Le~~~~~ 117 (182)
T PRK08455 102 RRYLKTSISLELSNEK 117 (182)
T ss_pred ceEEEEEEEEEECCHh
Confidence 3788888888877654
Done!