Query 037451
Match_columns 220
No_of_seqs 132 out of 814
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 21:24:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.4 1.4E-06 4.8E-11 68.9 9.9 103 69-182 43-147 (174)
2 1xo8_A AT1G01470; structural g 98.2 1.5E-06 5E-11 67.4 6.0 103 69-182 20-124 (151)
3 3but_A Uncharacterized protein 98.2 3.4E-05 1.2E-09 58.5 11.8 90 92-188 17-108 (136)
4 3s8f_C Cytochrome C oxidase po 45.0 6.7 0.00023 22.0 0.7 15 50-64 10-24 (34)
5 2lk9_A Bone marrow stromal ant 31.7 21 0.00073 19.8 1.4 21 40-60 3-23 (35)
6 2bn5_B U1 small nuclear ribonu 27.4 22 0.00074 17.9 0.8 7 1-7 2-8 (26)
7 2jp3_A FXYD domain-containing 24.0 64 0.0022 20.8 2.8 19 43-61 19-37 (67)
8 2knc_B Integrin beta-3; transm 23.8 44 0.0015 22.2 2.2 15 50-64 19-33 (79)
9 1nrp_R Receptor based peptide 23.6 14 0.00048 18.6 -0.3 15 99-113 6-20 (26)
10 2jo1_A Phospholemman; FXYD1, N 22.8 70 0.0024 20.8 2.8 17 45-61 20-36 (72)
11 1nro_R Receptor based peptide 21.9 23 0.00079 18.0 0.3 14 99-112 6-19 (27)
12 2zxe_G FXYD10, phospholemman-l 21.7 79 0.0027 20.7 3.0 19 43-61 21-39 (74)
13 3kdp_B Sodium/potassium-transp 21.2 37 0.0012 28.3 1.6 48 37-86 13-63 (286)
14 3ixz_B Potassium-transporting 20.9 72 0.0024 26.6 3.3 39 37-76 35-76 (290)
15 2hac_A T-cell surface glycopro 20.5 52 0.0018 18.1 1.6 21 44-64 4-24 (33)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.42 E-value=1.4e-06 Score=68.92 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=81.1
Q ss_pred CCCEEEecceeeeeEEcCCCCeeeEEEEEEEEEecCCCeeeEEEecEEEEEEECCEEeecccCC-CeeecCCCceEEEEE
Q 037451 69 RTPVFDTPNANLSTIYFDSPEYFNGDFTFLANFSNPNRKIGARFEFLEIELLFFNRLISTQIVQ-PFSQQPREQRLESVH 147 (220)
Q Consensus 69 ~~P~~~V~~~~v~~f~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~t~~v~~~ 147 (220)
+.|++++.++++.+++.. ...|.+.++++||| .+.+.+..++..+.-+|..|+++..+ ++..++.+++.+.+.
T Consensus 43 ~~PeV~v~~v~~~~~~l~-----~~~~~l~LrV~NPN-~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vp 116 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD-----GVDYHAKVSVKNPY-SQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVP 116 (174)
T ss_dssp CCCEEEEEEEEEEEECSS-----SEEEEEEEEEEECS-SSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEE
T ss_pred CCCEEEEEEeEEeccccc-----eEEEEEEEEEECCC-CCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEE
Confidence 679999999999987654 37899999999999 89999999999999999999999875 589999999999988
Q ss_pred EEeeeeecCHHHHHHHHHhhcC-CeEEEEEEEEEEE
Q 037451 148 MISSLVFMPQDHAVELRKQVQN-NRINYNIRASFKV 182 (220)
Q Consensus 148 l~~~~v~l~~~~~~~l~~d~~~-G~v~l~v~~~~~v 182 (220)
+..+- .....+..++.. +.++.++++...+
T Consensus 117 v~v~~-----~~l~~~~~~l~~~~~i~Y~L~g~L~i 147 (174)
T 1yyc_A 117 VKVAY-----SIAVSLMKDMCTDWDIDYQLDIGLTF 147 (174)
T ss_dssp EEESH-----HHHHHTCCCCCSSEEECEEEEEEEEE
T ss_pred EEEEH-----HHHHHHHHhcCCCCccceEEEEEEEe
Confidence 76432 222333345433 4677777665543
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.24 E-value=1.5e-06 Score=67.36 Aligned_cols=103 Identities=12% Similarity=0.171 Sum_probs=79.5
Q ss_pred CCCEEEecceeeeeEEcCCCCeeeEEEEEEEEEecCCCeeeEEEecEEEEEEECCEEeecccCC-CeeecCCCceEEEEE
Q 037451 69 RTPVFDTPNANLSTIYFDSPEYFNGDFTFLANFSNPNRKIGARFEFLEIELLFFNRLISTQIVQ-PFSQQPREQRLESVH 147 (220)
Q Consensus 69 ~~P~~~V~~~~v~~f~~~~~~~l~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~t~~v~~~ 147 (220)
+.|++++.++++.+++. ....|.+.++++||| .+.+.+..++..+.-+|..++++..+ ++..++++++.+.+.
T Consensus 20 ~~P~v~v~~v~~~~~~~-----~~~~~~~~l~V~NPN-~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vp 93 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR-----DSVEYLAKVSVTNPY-SHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIP 93 (151)
T ss_dssp CSCCCBCSEEEECCCTT-----TEECEEEEEEEECSS-SSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEEC
T ss_pred CCCEEEEEEeEEeccCc-----ceeEEEEEEEEECCC-CCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEE
Confidence 56888888888877643 346899999999999 89999999999999999999999874 689999999998887
Q ss_pred EEeeeeecCHHHHHHHHHhh-cCCeEEEEEEEEEEE
Q 037451 148 MISSLVFMPQDHAVELRKQV-QNNRINYNIRASFKV 182 (220)
Q Consensus 148 l~~~~v~l~~~~~~~l~~d~-~~G~v~l~v~~~~~v 182 (220)
+..+- ....++..++ ..+.++.+++++..+
T Consensus 94 v~v~~-----~~l~~~~~~l~~~~~i~Y~l~g~l~i 124 (151)
T 1xo8_A 94 VVVPY-----SILFNLARDVGVDWDIDYELQIGLTI 124 (151)
T ss_dssp CCEEH-----HHHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred EEEEH-----HHHHHHHHhcccCCcccEEEEEEEEE
Confidence 76442 2233333443 346788887776543
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.15 E-value=3.4e-05 Score=58.54 Aligned_cols=90 Identities=9% Similarity=0.093 Sum_probs=66.8
Q ss_pred eEEEEEEEEEecCCCeeeEEEecEEEEEEECCEEeeccc-CCCeeecCCCceEEEEEEEeeeeecCHHHHHHHHHhhcCC
Q 037451 92 NGDFTFLANFSNPNRKIGARFEFLEIELLFFNRLISTQI-VQPFSQQPREQRLESVHMISSLVFMPQDHAVELRKQVQNN 170 (220)
Q Consensus 92 ~~~~~~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~-vp~f~q~~~~t~~v~~~l~~~~v~l~~~~~~~l~~d~~~G 170 (220)
...|.+.|.+.||| .+.+.++.++..+...|..||++. ...+..++.+++.+.+.+..+...+... +.+-+.+|
T Consensus 17 ~t~~~~~l~V~NPN-~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~----~~~hi~ng 91 (136)
T 3but_A 17 QTEIVALAKVRNED-VVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREW----WVTHIANG 91 (136)
T ss_dssp EEEEEEEEEEECCS-SSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTH----HHHHHHTT
T ss_pred EEEEEEEEEEeCCC-CcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHH----HHHHhhcC
Confidence 57799999999999 899999999999999999999997 5789999999999998888765444433 33334444
Q ss_pred -eEEEEEEEEEEEEEEEeE
Q 037451 171 -RINYNIRASFKVKATLGV 188 (220)
Q Consensus 171 -~v~l~v~~~~~vr~~~g~ 188 (220)
.-.+++++++ ++.++.
T Consensus 92 e~s~l~i~~~~--~l~v~g 108 (136)
T 3but_A 92 EKTKIRVAIKP--TIEIGG 108 (136)
T ss_dssp SEEEEEEEEEE--EEECC-
T ss_pred CceEEEEEEEE--EEEeCC
Confidence 3444444443 344443
No 4
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=44.98 E-value=6.7 Score=21.98 Aligned_cols=15 Identities=13% Similarity=0.600 Sum_probs=10.2
Q ss_pred HHHHHHHHHhheeee
Q 037451 50 LILIFFGIATLIIFL 64 (220)
Q Consensus 50 ~l~l~lgi~~li~~l 64 (220)
..++++|++++++|+
T Consensus 10 ~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 10 AVILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 445667777777775
No 5
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=31.69 E-value=21 Score=19.79 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 037451 40 CCATLCLIFSLILIFFGIATL 60 (220)
Q Consensus 40 C~~~l~~~~~~l~l~lgi~~l 60 (220)
|--.++.-++++++++++.+.
T Consensus 3 cKL~lg~Gvl~LLviV~LgV~ 23 (35)
T 2lk9_A 3 SKLLLGIGILVLLIIVILGVP 23 (35)
T ss_dssp --CHHHHHHHHHHHHHHHHHH
T ss_pred ceeeecccHHHHHHHHHhcch
Confidence 433344333344444444333
No 6
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=27.37 E-value=22 Score=17.95 Aligned_cols=7 Identities=43% Similarity=0.971 Sum_probs=4.9
Q ss_pred CCCCCCC
Q 037451 1 PPINHQS 7 (220)
Q Consensus 1 ~~~~~~~ 7 (220)
|||.||-
T Consensus 2 pppahhn 8 (26)
T 2bn5_B 2 PPPAHHN 8 (26)
T ss_dssp CCCCCCC
T ss_pred cCCccCc
Confidence 6777775
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=24.03 E-value=64 Score=20.76 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhhe
Q 037451 43 TLCLIFSLILIFFGIATLI 61 (220)
Q Consensus 43 ~l~~~~~~l~l~lgi~~li 61 (220)
+-..++..+++++|+++++
T Consensus 19 igGLifA~vLfi~GI~iil 37 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHHHHHHHH
Confidence 3344455566667766553
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.82 E-value=44 Score=22.18 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=10.1
Q ss_pred HHHHHHHHHhheeee
Q 037451 50 LILIFFGIATLIIFL 64 (220)
Q Consensus 50 ~l~l~lgi~~li~~l 64 (220)
..++++|++++++|-
T Consensus 19 ~gilliGllllliwk 33 (79)
T 2knc_B 19 GAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445667877777763
No 9
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=23.64 E-value=14 Score=18.64 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=9.8
Q ss_pred EEEecCCCeeeEEEe
Q 037451 99 ANFSNPNRKIGARFE 113 (220)
Q Consensus 99 l~v~NPN~~~~i~Y~ 113 (220)
+..+|||.+..-.++
T Consensus 6 fllrnpndkyepfwe 20 (26)
T 1nrp_R 6 FLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhcCCCcccCcccc
Confidence 457899987554443
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=22.81 E-value=70 Score=20.82 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhhe
Q 037451 45 CLIFSLILIFFGIATLI 61 (220)
Q Consensus 45 ~~~~~~l~l~lgi~~li 61 (220)
..++..+++++|+++++
T Consensus 20 GLifA~vLfi~GI~iil 36 (72)
T 2jo1_A 20 GLVIAGILFILGILIVL 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 44444556666766543
No 11
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=21.88 E-value=23 Score=18.02 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=9.1
Q ss_pred EEEecCCCeeeEEE
Q 037451 99 ANFSNPNRKIGARF 112 (220)
Q Consensus 99 l~v~NPN~~~~i~Y 112 (220)
+..+|||.+..-.+
T Consensus 6 fllrnpndkyepfw 19 (27)
T 1nro_R 6 FLLRNPNDKYEPFW 19 (27)
T ss_pred ccccCCCcccCccc
Confidence 35789997754443
No 12
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=21.71 E-value=79 Score=20.72 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhhe
Q 037451 43 TLCLIFSLILIFFGIATLI 61 (220)
Q Consensus 43 ~l~~~~~~l~l~lgi~~li 61 (220)
+-..++..+++++||++++
T Consensus 21 igGLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 21 VVGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eccchhHHHHHHHHHHHHH
Confidence 3444555566677766554
No 13
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=21.20 E-value=37 Score=28.34 Aligned_cols=48 Identities=17% Similarity=0.125 Sum_probs=26.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhee---eeEEecCCCEEEecceeeeeEEcC
Q 037451 37 LIWCCATLCLIFSLILIFFGIATLII---FLVIRPRTPVFDTPNANLSTIYFD 86 (220)
Q Consensus 37 ~~~C~~~l~~~~~~l~l~lgi~~li~---~lvl~P~~P~~~V~~~~v~~f~~~ 86 (220)
..|.-.+++-+++ -++++|++++.+ +..+.|+.|++. +...-.++.+.
T Consensus 13 ~sW~~IllFYliF-Y~~La~lFa~~m~v~l~TLd~~~Pkyq-d~~~~PGL~~~ 63 (286)
T 3kdp_B 13 GSWFKILLFYVIF-YGCLAGIFIGTIQVMLLTISEFKPTYQ-DRVAPPGLTQI 63 (286)
T ss_dssp SCCHHHHHHHHHH-HHHHHHHHHHHHHGGGSCSCSSSCSCC-TTTCSCCCCBS
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcccCCccc-CCCCCCcceec
Confidence 3566655655542 233444444444 445889999999 65544444443
No 14
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=20.86 E-value=72 Score=26.59 Aligned_cols=39 Identities=23% Similarity=0.432 Sum_probs=21.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhe---eeeEEecCCCEEEec
Q 037451 37 LIWCCATLCLIFSLILIFFGIATLI---IFLVIRPRTPVFDTP 76 (220)
Q Consensus 37 ~~~C~~~l~~~~~~l~l~lgi~~li---~~lvl~P~~P~~~V~ 76 (220)
..|.-.+++-+++ -++++|++++. ++..+.|..|++.-.
T Consensus 35 ~sW~~IllFYliF-Y~~LaglFa~~m~v~l~Tld~~~Pkyqd~ 76 (290)
T 3ixz_B 35 SRWVWISLYYVAF-YVVMSGIFALCIYVLMRTIDPYTPDYQDQ 76 (290)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCCCcccc
Confidence 3566655655542 22333444433 344678889998644
No 15
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=20.52 E-value=52 Score=18.12 Aligned_cols=21 Identities=33% Similarity=0.806 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhheeee
Q 037451 44 LCLIFSLILIFFGIATLIIFL 64 (220)
Q Consensus 44 l~~~~~~l~l~lgi~~li~~l 64 (220)
+|.++=.++++-|+++.++|+
T Consensus 4 lCYiLDgiL~iYgii~T~Ly~ 24 (33)
T 2hac_A 4 LCYLLDGILFIYGVILTALFL 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eEeehHHHHHHHHHHHHHHHH
Confidence 456655667778888877764
Done!