AmiGO: BLAST Results


BLAST match view associations BLAST with CBP20 CBP20 CBP20 AT5G44200	protein from Arabidopsis thaliana	2.5e-58
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 nuclear cap-binding protein subunit 2	gene from Dictyostelium discoideum	3.9e-37
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Bos taurus	6.3e-37
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Uncharacterized protein	protein from Canis lupus familiaris	6.3e-37
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Homo sapiens	6.3e-37
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Uncharacterized protein	protein from Sus scrofa	6.3e-37
BLAST match view associations BLAST with Ncbp2 Ncbp2 Ncbp2 nuclear cap binding protein subunit 2	protein from Mus musculus	6.3e-37
BLAST match view associations BLAST with Ncbp2 Ncbp2 Ncbp2 nuclear cap binding protein subunit 2	gene from Rattus norvegicus	6.3e-37
BLAST match view associations BLAST with Cbp20 Cbp20 Cbp20 cap binding protein 20	protein from Drosophila melanogaster	1.5e-35
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Taeniopygia guttata	1.5e-35
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Salmo salar	1.5e-35
BLAST match view associations BLAST with ncbp-2 ncbp-2 ncbp-2	gene from Caenorhabditis elegans	2.4e-35
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Gallus gallus	5.1e-35
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Esox lucius	5.1e-35
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Gallus gallus	6.5e-35
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 nuclear cap binding protein subunit 2	gene_product from Danio rerio	1.3e-34
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Xenopus laevis	2.8e-34
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Xenopus (Silurana) tropicalis	2.8e-34
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Siniperca chuatsi	2.5e-33
BLAST match view associations BLAST with LOC100621482 LOC100621482 LOC100621482 Uncharacterized protein	protein from Sus scrofa	1.6e-31
BLAST match view associations BLAST with MGG_06296 MGG_06296 MGG_06296 Nuclear cap-binding protein subunit 2	protein from Magnaporthe oryzae 70-15	1.6e-31
BLAST match view associations BLAST with NCBP2L NCBP2L NCBP2L Uncharacterized protein	protein from Canis lupus familiaris	2.3e-30
BLAST match view associations BLAST with NCBP2L NCBP2L NCBP2L Uncharacterized protein	protein from Sus scrofa	1.6e-29
BLAST match view associations BLAST with NCBP2L NCBP2L NCBP2L Nuclear cap-binding protein subunit 2-like	protein from Homo sapiens	3.2e-26
BLAST match view associations BLAST with CBC2 CBC2 CBC2 Small subunit of the heterodimeric cap binding complex	gene from Saccharomyces cerevisiae	5.2e-26
BLAST match view associations BLAST with PFD0750w PFD0750w PFD0750w nuclear cap-binding protein, putative	gene from Plasmodium falciparum	4.6e-25
BLAST match view associations BLAST with PFD0750w PFD0750w PFD0750w Nuclear cap-binding protein, putative	protein from Plasmodium falciparum 3D7	4.6e-25
BLAST match view associations BLAST with orf19.763 orf19.763 orf19.763	gene_product from Candida albicans	2.3e-23
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 cDNA FLJ35897 fis, clone TESTI2009502, highly similar to Nuclear cap-binding protein subunit 2	protein from Homo sapiens	5.3e-17
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Homo sapiens	5.3e-17
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Homo sapiens	1.3e-11
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	9.4e-11
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	1.1e-09
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	2.9e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	4.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	4.7e-09
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	4.7e-09
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	4.7e-09
BLAST match view associations BLAST with NSR1 NSR1 NSR1 Nucleolar protein that binds nuclear localization sequences	gene from Saccharomyces cerevisiae	6.5e-09
BLAST match view associations BLAST with R09B3.2 R09B3.2 R09B3.2	gene from Caenorhabditis elegans	7.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	9.7e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	9.7e-09
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	9.7e-09
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	1.2e-08
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	3.3e-08
BLAST match view associations BLAST with AT2G27330 AT2G27330 AT2G27330	protein from Arabidopsis thaliana	3.3e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	4.0e-08
BLAST match view associations BLAST with I3L8K8 I3L8K8 I3L8K8 Uncharacterized protein	protein from Sus scrofa	5.3e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	6.2e-08
BLAST match view associations BLAST with RBM7 RBM7 RBM7 RNA-binding protein 7	protein from Homo sapiens	7.2e-08
BLAST match view associations BLAST with I3L521 I3L521 I3L521 Uncharacterized protein	protein from Homo sapiens	7.2e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	8.4e-08
BLAST match view associations BLAST with RBM7 RBM7 RBM7 RNA-binding protein 7	protein from Homo sapiens	9.4e-08
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich-splicing factor 2	protein from Homo sapiens	9.4e-08
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich-splicing factor 2	protein from Homo sapiens	9.4e-08
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	9.4e-08
BLAST match view associations BLAST with R09B3.3 R09B3.3 R09B3.3	gene from Caenorhabditis elegans	1.7e-07
BLAST match view associations BLAST with Y57G11A.5 Y57G11A.5 Y57G11A.5	gene from Caenorhabditis elegans	1.7e-07
BLAST match view associations BLAST with R09B3.3 R09B3.3 R09B3.3 Protein R09B3.3	protein from Caenorhabditis elegans	1.7e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	1.7e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.4e-07
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	2.9e-07
BLAST match view associations BLAST with R06C1.4 R06C1.4 R06C1.4	gene from Caenorhabditis elegans	2.9e-07
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Uncharacterized protein	protein from Gallus gallus	3.4e-07
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	3.8e-07
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	3.8e-07
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	4.4e-07
BLAST match view associations BLAST with MGG_09885 MGG_09885 MGG_09885 Cleavage stimulation factor 64-kDa subunit	protein from Magnaporthe oryzae 70-15	4.6e-07
BLAST match view associations BLAST with Rbm11 Rbm11 Rbm11 RNA binding motif protein 11	protein from Mus musculus	5.7e-07
BLAST match view associations BLAST with Rbm11 Rbm11 Rbm11 RNA binding motif protein 11	gene from Rattus norvegicus	5.7e-07
BLAST match view associations BLAST with tra2b tra2b tra2b transformer 2 beta homolog (Drosophila)	gene_product from Danio rerio	7.0e-07
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Uncharacterized protein	protein from Gallus gallus	7.7e-07
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	8.5e-07
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	9.2e-07
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Transformer-2 protein homolog alpha	protein from Homo sapiens	9.3e-07
BLAST match view associations BLAST with TRA2A TRA2A TRA2A cDNA FLJ50689, highly similar to Transformer-2 protein homolog	protein from Homo sapiens	1.0e-06
BLAST match view associations BLAST with RBM11 RBM11 RBM11 Uncharacterized protein	protein from Bos taurus	1.2e-06
BLAST match view associations BLAST with rsp-4 rsp-4 rsp-4	gene from Caenorhabditis elegans	1.4e-06
BLAST match view associations BLAST with rsp-4 rsp-4 rsp-4 Probable splicing factor, arginine/serine-rich 4	protein from Caenorhabditis elegans	1.4e-06
BLAST match view associations BLAST with srsf2b srsf2b srsf2b serine/arginine-rich splicing factor 2b	gene_product from Danio rerio	1.5e-06
BLAST match view associations BLAST with orf19.1389 orf19.1389 orf19.1389	gene_product from Candida albicans	1.5e-06
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Uncharacterized protein	protein from Sus scrofa	1.8e-06
BLAST match view associations BLAST with RBM11 RBM11 RBM11 Splicing regulator RBM11	protein from Homo sapiens	1.8e-06
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Transformer-2 protein homolog beta	protein from Bos taurus	1.9e-06
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Uncharacterized protein	protein from Canis lupus familiaris	1.9e-06
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Transformer-2 protein homolog beta	protein from Homo sapiens	1.9e-06
BLAST match view associations BLAST with Tra2b Tra2b Tra2b transformer 2 beta homolog (Drosophila)	protein from Mus musculus	1.9e-06
BLAST match view associations BLAST with Tra2b Tra2b Tra2b transformer 2 beta homolog (Drosophila)	gene from Rattus norvegicus	1.9e-06
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037453
        (216 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2167649 - symbol:CBP20 "CAP-binding protein 20...   599  2.5e-58   1
DICTYBASE|DDB_G0287197 - symbol:ncbp2 "nuclear cap-bindin...   399  3.9e-37   1
UNIPROTKB|Q3ZBJ1 - symbol:NCBP2 "Nuclear cap-binding prot...   397  6.3e-37   1
UNIPROTKB|E2RFC9 - symbol:NCBP2 "Uncharacterized protein"...   397  6.3e-37   1
UNIPROTKB|P52298 - symbol:NCBP2 "Nuclear cap-binding prot...   397  6.3e-37   1
UNIPROTKB|F2Z5Q9 - symbol:NCBP2 "Uncharacterized protein"...   397  6.3e-37   1
MGI|MGI:1915342 - symbol:Ncbp2 "nuclear cap binding prote...   397  6.3e-37   1
RGD|1596188 - symbol:Ncbp2 "nuclear cap binding protein s...   397  6.3e-37   1
FB|FBgn0022943 - symbol:Cbp20 "cap binding protein 20" sp...   384  1.5e-35   1
UNIPROTKB|B5G279 - symbol:NCBP2 "Nuclear cap-binding prot...   384  1.5e-35   1
UNIPROTKB|C0H859 - symbol:ncbp2 "Nuclear cap-binding prot...   384  1.5e-35   1
WB|WBGene00009141 - symbol:ncbp-2 species:6239 "Caenorhab...   382  2.4e-35   1
UNIPROTKB|Q5ZKR5 - symbol:NCBP2 "Nuclear cap-binding prot...   379  5.1e-35   1
UNIPROTKB|C1BY64 - symbol:ncbp2 "Nuclear cap-binding prot...   379  5.1e-35   1
UNIPROTKB|F1NIR6 - symbol:NCBP2 "Nuclear cap-binding prot...   378  6.5e-35   1
ZFIN|ZDB-GENE-020419-31 - symbol:ncbp2 "nuclear cap bindi...   375  1.3e-34   1
UNIPROTKB|P52299 - symbol:ncbp2 "Nuclear cap-binding prot...   372  2.8e-34   1
UNIPROTKB|Q6DES0 - symbol:ncbp2 "Nuclear cap-binding prot...   372  2.8e-34   1
UNIPROTKB|A2SW84 - symbol:ncbp2 "Nuclear cap-binding prot...   363  2.5e-33   1
UNIPROTKB|I3LIU9 - symbol:LOC100621482 "Uncharacterized p...   346  1.6e-31   1
UNIPROTKB|G4N872 - symbol:MGG_06296 "Nuclear cap-binding ...   346  1.6e-31   1
UNIPROTKB|E2RBE5 - symbol:NCBP2L "Uncharacterized protein...   335  2.3e-30   1
UNIPROTKB|F1RXK2 - symbol:NCBP2L "Uncharacterized protein...   327  1.6e-29   1
POMBASE|SPBC13A2.01c - symbol:SPBC13A2.01c "nuclear cap-b...   319  1.2e-28   1
UNIPROTKB|A6PVI3 - symbol:NCBP2L "Nuclear cap-binding pro...   296  3.2e-26   1
SGD|S000006099 - symbol:CBC2 "Small subunit of the hetero...   294  5.2e-26   1
GENEDB_PFALCIPARUM|PFD0750w - symbol:PFD0750w "nuclear ca...   285  4.6e-25   1
UNIPROTKB|Q8I1T2 - symbol:PFD0750w "Nuclear cap-binding p...   285  4.6e-25   1
CGD|CAL0001895 - symbol:orf19.763 species:5476 "Candida a...   269  2.3e-23   1
ASPGD|ASPL0000003062 - symbol:AN6142 species:162425 "Emer...   259  2.6e-22   1
UNIPROTKB|B3KSB0 - symbol:NCBP2 "Nuclear cap-binding prot...   209  5.3e-17   1
UNIPROTKB|C9JQX9 - symbol:NCBP2 "Nuclear cap-binding prot...   209  5.3e-17   1
UNIPROTKB|E9PAR5 - symbol:NCBP2 "Nuclear cap-binding prot...   119  1.3e-11   2
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi...   150  9.4e-11   1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin...   140  1.1e-09   1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi...   136  2.9e-09   1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"...   135  3.6e-09   1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi...   135  3.6e-09   1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi...   135  3.6e-09   1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi...   135  3.6e-09   1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi...   135  3.6e-09   1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi...   135  3.6e-09   1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi...   135  3.6e-09   1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"...   135  3.6e-09   1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi...   135  3.6e-09   1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"...   135  4.2e-09   1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi...   134  4.7e-09   1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding...   134  4.7e-09   1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro...   134  4.7e-09   1
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind...   146  6.5e-09   1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha...   132  7.6e-09   1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"...   131  9.7e-09   1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"...   131  9.7e-09   1
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein...   131  9.7e-09   1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi...   130  1.2e-08   1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin...   126  3.3e-08   1
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi...   126  3.3e-08   1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi...   135  4.0e-08   1
UNIPROTKB|I3L8K8 - symbol:I3L8K8 "Uncharacterized protein...   124  5.3e-08   1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"...   135  6.2e-08   1
UNIPROTKB|F5GXV8 - symbol:RBM7 "RNA-binding protein 7" sp...   123  7.2e-08   1
UNIPROTKB|I3L521 - symbol:I3L521 "Uncharacterized protein...   123  7.2e-08   1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"...   131  8.4e-08   1
UNIPROTKB|F5H606 - symbol:RBM7 "RNA-binding protein 7" sp...   122  9.4e-08   1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl...   122  9.4e-08   1
UNIPROTKB|J3QL05 - symbol:SRSF2 "Serine/arginine-rich-spl...   122  9.4e-08   1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ...   122  9.4e-08   1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot...   122  9.4e-08   1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha...   120  1.7e-07   1
WB|WBGene00013293 - symbol:Y57G11A.5 species:6239 "Caenor...   120  1.7e-07   1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci...   120  1.7e-07   1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi...   135  1.7e-07   1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi...   135  2.4e-07   1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p...   118  2.9e-07   1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha...   118  2.9e-07   1
UNIPROTKB|E1C875 - symbol:TRA2A "Uncharacterized protein"...   126  3.4e-07   1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ...   117  3.8e-07   1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi...   117  3.8e-07   1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ...   130  4.4e-07   1
UNIPROTKB|G4MR34 - symbol:MGG_09885 "Cleavage stimulation...   133  4.6e-07   1
MGI|MGI:2447622 - symbol:Rbm11 "RNA binding motif protein...   130  5.7e-07   1
RGD|1305195 - symbol:Rbm11 "RNA binding motif protein 11"...   130  5.7e-07   1
ZFIN|ZDB-GENE-040426-1094 - symbol:tra2b "transformer 2 b...   131  7.0e-07   1
UNIPROTKB|Q9DDU8 - symbol:TRA2B "Uncharacterized protein"...   131  7.7e-07   1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"...   124  8.5e-07   1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin...    97  9.2e-07   2
UNIPROTKB|B4DQI6 - symbol:TRA2A "cDNA FLJ50614, highly si...   123  9.3e-07   1
UNIPROTKB|B4DUA9 - symbol:TRA2A "Transformer-2 protein ho...   123  1.0e-06   1
UNIPROTKB|F1N209 - symbol:RBM11 "Uncharacterized protein"...   128  1.2e-06   1
WB|WBGene00004701 - symbol:rsp-4 species:6239 "Caenorhabd...   124  1.4e-06   1
UNIPROTKB|Q09511 - symbol:rsp-4 "Probable splicing factor...   124  1.4e-06   1
ZFIN|ZDB-GENE-030131-2420 - symbol:srsf2b "serine/arginin...   126  1.5e-06   1
CGD|CAL0003946 - symbol:orf19.1389 species:5476 "Candida ...   117  1.5e-06   1
UNIPROTKB|I3LBN9 - symbol:TRA2B "Uncharacterized protein"...   128  1.8e-06   1
UNIPROTKB|P57052 - symbol:RBM11 "Splicing regulator RBM11...   128  1.8e-06   1
UNIPROTKB|Q3ZBT6 - symbol:TRA2B "Transformer-2 protein ho...   128  1.9e-06   1
UNIPROTKB|E2RD37 - symbol:TRA2B "Uncharacterized protein"...   128  1.9e-06   1
UNIPROTKB|P62995 - symbol:TRA2B "Transformer-2 protein ho...   128  1.9e-06   1
MGI|MGI:106016 - symbol:Tra2b "transformer 2 beta homolog...   128  1.9e-06   1
RGD|619886 - symbol:Tra2b "transformer 2 beta homolog (Dr...   128  1.9e-06   1

WARNING:  Descriptions of 202 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2167649 [details] [associations]
            symbol:CBP20 "CAP-binding protein 20" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0000339 "RNA cap
            binding" evidence=IDA] [GO:0016070 "RNA metabolic process"
            evidence=TAS] [GO:0005845 "mRNA cap binding complex" evidence=TAS]
            [GO:0000394 "RNA splicing, via endonucleolytic cleavage and
            ligation" evidence=RCA;IMP] [GO:0031053 "primary miRNA processing"
            evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=RCA] [GO:0009086 "methionine biosynthetic
            process" evidence=RCA] [GO:0030422 "production of siRNA involved in
            RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
            involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
            "post-translational protein modification" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:AB005239 GO:GO:0005845 eggNOG:COG0724
            GO:GO:0006370 GO:GO:0031053 GO:GO:0000339 HOGENOM:HOG000217589
            PANTHER:PTHR18847 GO:GO:0000394 EMBL:AF140219 EMBL:BT004813
            EMBL:AK227850 IPI:IPI00549008 RefSeq:NP_001078705.1
            RefSeq:NP_199233.1 UniGene:At.23549 HSSP:P52298
            ProteinModelPortal:Q9XFD1 SMR:Q9XFD1 IntAct:Q9XFD1 STRING:Q9XFD1
            PaxDb:Q9XFD1 PRIDE:Q9XFD1 EnsemblPlants:AT5G44200.1
            EnsemblPlants:AT5G44200.2 GeneID:834443 KEGG:ath:AT5G44200
            TAIR:At5g44200 InParanoid:Q9XFD1 KO:K12883 OMA:YISGTIL
            PhylomeDB:Q9XFD1 ProtClustDB:CLSN2687230 Genevestigator:Q9XFD1
            Uniprot:Q9XFD1
        Length = 257

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 114/138 (82%), Positives = 120/138 (86%)

Query:    33 MASLFKDQRKLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEI 92
             MASLFK+Q KLSAYRDRRF GTQEEF+EAL ASTTVY+GN+SFYTTEEQ+YELFSRAGEI
Sbjct:     1 MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60

Query:    93 KKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXX 152
             KKIIMGLDKN+KTPCGFCF LFYSREDTEDAVKYISGTILDDRPIRVDFDWGF       
Sbjct:    61 KKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query:   153 XXXXXXXVRDEYRTDYDP 170
                    VRDEYRTDYDP
Sbjct:   121 RGRSGGQVRDEYRTDYDP 138


>DICTYBASE|DDB_G0287197 [details] [associations]
            symbol:ncbp2 "nuclear cap-binding protein subunit 2"
            species:44689 "Dictyostelium discoideum" [GO:0045292 "mRNA cis
            splicing, via spliceosome" evidence=IEA] [GO:0005846 "nuclear cap
            binding complex" evidence=IEA;ISS] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000339 "RNA cap binding"
            evidence=IEA;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0287197 GO:GO:0005634 GenomeReviews:CM000153_GR
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000398
            eggNOG:COG0724 GO:GO:0006370 EMBL:AAFI02000098 GO:GO:0000339
            PANTHER:PTHR18847 GO:GO:0005846 HSSP:P52298 KO:K12883
            RefSeq:XP_637361.1 ProteinModelPortal:Q54KR9 SMR:Q54KR9
            STRING:Q54KR9 EnsemblProtists:DDB0233456 GeneID:8625983
            KEGG:ddi:DDB_G0287197 InParanoid:Q54KR9 OMA:KEDAADC
            ProtClustDB:CLSZ2497150 Uniprot:Q54KR9
        Length = 234

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 73/125 (58%), Positives = 93/125 (74%)

Query:    46 YRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKT 105
             Y D++   TQ+EF+ A+  S+T+YVG +SFYTTEEQ+YELFS+ GEIK+IIMGLD+N KT
Sbjct:    12 YYDKKSGFTQDEFKHAIDKSSTIYVGYLSFYTTEEQLYELFSKCGEIKRIIMGLDRNQKT 71

Query:   106 PCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXVRDEYR 165
             PCGFCF  +YS+ED  D +KYI+G+ LD+R IR D+D+GF              VRDEYR
Sbjct:    72 PCGFCFVEYYSKEDAADCIKYINGSKLDERLIRCDWDYGFKEGRQYGRGLSGGQVRDEYR 131

Query:   166 TDYDP 170
             TDYDP
Sbjct:   132 TDYDP 136


>UNIPROTKB|Q3ZBJ1 [details] [associations]
            symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
            species:9913 "Bos taurus" [GO:0045292 "mRNA cis splicing, via
            spliceosome" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
            evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0046833
            "positive regulation of RNA export from nucleus" evidence=ISS]
            [GO:0006446 "regulation of translational initiation" evidence=ISS]
            [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0000340 "RNA
            7-methylguanosine cap binding" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0000184 "nuclear-transcribed mRNA
            catabolic process, nonsense-mediated decay" evidence=ISS]
            [GO:0005845 "mRNA cap binding complex" evidence=ISS] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=ISS] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0031047 "gene silencing by RNA"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
            Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
            GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
            HOGENOM:HOG000217589 HOVERGEN:HBG052581 OrthoDB:EOG470TJG
            PANTHER:PTHR18847 KO:K12883 EMBL:BC103267 IPI:IPI00687118
            RefSeq:NP_001029568.1 UniGene:Bt.49382 ProteinModelPortal:Q3ZBJ1
            SMR:Q3ZBJ1 STRING:Q3ZBJ1 PRIDE:Q3ZBJ1 Ensembl:ENSBTAT00000011684
            GeneID:510872 KEGG:bta:510872 CTD:22916
            GeneTree:ENSGT00390000003197 InParanoid:Q3ZBJ1 OMA:RQDYDPA
            NextBio:20869659 GO:GO:0046833 GO:GO:0006408 Uniprot:Q3ZBJ1
        Length = 156

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 78/128 (60%), Positives = 92/128 (71%)

Query:    42 KLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDK 101
             +LS YRD+ F G  EE E+ L  S T+YVGN+SFYTTEEQIYELFS++G+IKKIIMGLDK
Sbjct:    16 ELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75

Query:   102 NSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXVR 161
               KT CGFCF  +YSR D E+A++YI+GT LDDR IR D+D GF              VR
Sbjct:    76 MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVR 135

Query:   162 DEYRTDYD 169
             DEYR DYD
Sbjct:   136 DEYRQDYD 143


>UNIPROTKB|E2RFC9 [details] [associations]
            symbol:NCBP2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=IEA] [GO:0006446 "regulation of translational initiation"
            evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
            evidence=IEA] [GO:0005845 "mRNA cap binding complex" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm"
            evidence=IEA] [GO:0000340 "RNA 7-methylguanosine cap binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0005846
            "nuclear cap binding complex" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
            GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0005845 GO:GO:0000340
            GO:GO:0006370 PANTHER:PTHR18847 KO:K12883 CTD:22916
            GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AAEX03017103
            RefSeq:XP_535779.1 ProteinModelPortal:E2RFC9 SMR:E2RFC9
            PRIDE:E2RFC9 Ensembl:ENSCAFT00000020794 GeneID:478603
            KEGG:cfa:478603 NextBio:20853918 Uniprot:E2RFC9
        Length = 156

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 78/128 (60%), Positives = 92/128 (71%)

Query:    42 KLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDK 101
             +LS YRD+ F G  EE E+ L  S T+YVGN+SFYTTEEQIYELFS++G+IKKIIMGLDK
Sbjct:    16 ELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75

Query:   102 NSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXVR 161
               KT CGFCF  +YSR D E+A++YI+GT LDDR IR D+D GF              VR
Sbjct:    76 MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVR 135

Query:   162 DEYRTDYD 169
             DEYR DYD
Sbjct:   136 DEYRQDYD 143


>UNIPROTKB|P52298 [details] [associations]
            symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0006408 "snRNA export
            from nucleus" evidence=ISS;NAS] [GO:0000340 "RNA 7-methylguanosine
            cap binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IMP;IDA;TAS] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=IDA;TAS] [GO:0005845
            "mRNA cap binding complex" evidence=IDA] [GO:0005654 "nucleoplasm"
            evidence=IDA;TAS] [GO:0006446 "regulation of translational
            initiation" evidence=IDA] [GO:0046833 "positive regulation of RNA
            export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=ISS;TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0000339 "RNA cap
            binding" evidence=NAS] [GO:0045292 "mRNA cis splicing, via
            spliceosome" evidence=IDA] [GO:0000387 "spliceosomal snRNP
            assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=TAS] [GO:0006368 "transcription elongation from RNA
            polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
            RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
            processing" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
            evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
            evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
            metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
            process" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
            evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
            [GO:0050434 "positive regulation of viral transcription"
            evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
            Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
            GO:GO:0016032 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
            Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006368 GO:GO:0006406
            GO:GO:0031047 GO:GO:0005845 GO:GO:0000340 GO:GO:0000387
            GO:GO:0034660 EMBL:CH471191 Reactome:REACT_1788 eggNOG:COG0724
            GO:GO:0006370 GO:GO:0050434 GO:GO:0045292 GO:GO:0006369
            GO:GO:0031124 Reactome:REACT_78 PDB:3FEX PDB:3FEY PDBsum:3FEX
            PDBsum:3FEY GO:GO:0008334 HOGENOM:HOG000217589 HOVERGEN:HBG052581
            PANTHER:PTHR18847 PDB:1H2T PDB:1H2U PDB:1H2V PDB:1H6K PDB:1N52
            PDB:1N54 PDBsum:1H2T PDBsum:1H2U PDBsum:1H2V PDBsum:1H6K
            PDBsum:1N52 PDBsum:1N54 KO:K12883 CTD:22916 OMA:RQDYDPA
            GO:GO:0046833 GO:GO:0006408 EMBL:X84157 EMBL:D59253 EMBL:AK297506
            EMBL:AK315903 EMBL:AK316601 EMBL:AY644767 EMBL:BT006842
            EMBL:BC001255 IPI:IPI00183500 IPI:IPI00927860 PIR:I37222 PIR:S60109
            RefSeq:NP_001036005.1 RefSeq:NP_031388.2 UniGene:Hs.591671
            DisProt:DP00393 ProteinModelPortal:P52298 SMR:P52298 DIP:DIP-33246N
            IntAct:P52298 MINT:MINT-248711 STRING:P52298 PhosphoSite:P52298
            DMDM:1705651 PaxDb:P52298 PRIDE:P52298 DNASU:22916
            Ensembl:ENST00000321256 Ensembl:ENST00000452404 GeneID:22916
            KEGG:hsa:22916 UCSC:uc003fxb.1 UCSC:uc011btz.1
            GeneCards:GC03M196662 HGNC:HGNC:7659 HPA:HPA044850 MIM:605133
            neXtProt:NX_P52298 PharmGKB:PA31462 InParanoid:P52298
            PhylomeDB:P52298 ChiTaRS:NCBP2 EvolutionaryTrace:P52298
            GenomeRNAi:22916 NextBio:43603 ArrayExpress:P52298 Bgee:P52298
            CleanEx:HS_NCBP2 Genevestigator:P52298 GermOnline:ENSG00000114503
            Uniprot:P52298
        Length = 156

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 78/128 (60%), Positives = 92/128 (71%)

Query:    42 KLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDK 101
             +LS YRD+ F G  EE E+ L  S T+YVGN+SFYTTEEQIYELFS++G+IKKIIMGLDK
Sbjct:    16 ELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75

Query:   102 NSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXVR 161
               KT CGFCF  +YSR D E+A++YI+GT LDDR IR D+D GF              VR
Sbjct:    76 MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVR 135

Query:   162 DEYRTDYD 169
             DEYR DYD
Sbjct:   136 DEYRQDYD 143


>UNIPROTKB|F2Z5Q9 [details] [associations]
            symbol:NCBP2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            PANTHER:PTHR18847 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
            OMA:RQDYDPA EMBL:CU862047 RefSeq:XP_003358812.2 UniGene:Ssc.56609
            ProteinModelPortal:F2Z5Q9 SMR:F2Z5Q9 PRIDE:F2Z5Q9
            Ensembl:ENSSSCT00000024784 GeneID:100156513 KEGG:ssc:100156513
            Uniprot:F2Z5Q9
        Length = 156

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 78/128 (60%), Positives = 92/128 (71%)

Query:    42 KLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDK 101
             +LS YRD+ F G  EE E+ L  S T+YVGN+SFYTTEEQIYELFS++G+IKKIIMGLDK
Sbjct:    16 ELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75

Query:   102 NSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXVR 161
               KT CGFCF  +YSR D E+A++YI+GT LDDR IR D+D GF              VR
Sbjct:    76 MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVR 135

Query:   162 DEYRTDYD 169
             DEYR DYD
Sbjct:   136 DEYRQDYD 143


>MGI|MGI:1915342 [details] [associations]
            symbol:Ncbp2 "nuclear cap binding protein subunit 2"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=ISO] [GO:0000340 "RNA
            7-methylguanosine cap binding" evidence=ISO] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005845
            "mRNA cap binding complex" evidence=ISO] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=ISO] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0006417 "regulation of translation"
            evidence=IEA] [GO:0006446 "regulation of translational initiation"
            evidence=ISO] [GO:0006810 "transport" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0031047 "gene silencing by RNA"
            evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1915342
            GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
            GO:GO:0006446 Gene3D:3.30.70.330 EMBL:CH466521 GO:GO:0031047
            GO:GO:0005845 GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724
            GO:GO:0006370 GO:GO:0045292 HOGENOM:HOG000217589 HOVERGEN:HBG052581
            OrthoDB:EOG470TJG PANTHER:PTHR18847 KO:K12883 CTD:22916
            GeneTree:ENSGT00390000003197 OMA:RQDYDPA GO:GO:0046833
            GO:GO:0006408 EMBL:AK008980 EMBL:AK012659 EMBL:AK077841
            EMBL:AK147027 EMBL:BC118926 IPI:IPI00132019 RefSeq:NP_080830.1
            UniGene:Mm.290027 ProteinModelPortal:Q9CQ49 SMR:Q9CQ49
            STRING:Q9CQ49 PhosphoSite:Q9CQ49 PaxDb:Q9CQ49 PRIDE:Q9CQ49
            Ensembl:ENSMUST00000023460 GeneID:68092 KEGG:mmu:68092
            UCSC:uc007yxz.2 InParanoid:Q0VF93 NextBio:326400 Bgee:Q9CQ49
            CleanEx:MM_NCBP2 Genevestigator:Q9CQ49
            GermOnline:ENSMUSG00000022774 Uniprot:Q9CQ49
        Length = 156

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 78/128 (60%), Positives = 92/128 (71%)

Query:    42 KLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDK 101
             +LS YRD+ F G  EE E+ L  S T+YVGN+SFYTTEEQIYELFS++G+IKKIIMGLDK
Sbjct:    16 ELSEYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75

Query:   102 NSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXVR 161
               KT CGFCF  +YSR D E+A++YI+GT LDDR IR D+D GF              VR
Sbjct:    76 MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVR 135

Query:   162 DEYRTDYD 169
             DEYR DYD
Sbjct:   136 DEYREDYD 143


>RGD|1596188 [details] [associations]
            symbol:Ncbp2 "nuclear cap binding protein subunit 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA;ISO] [GO:0000340
            "RNA 7-methylguanosine cap binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=IEA;ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005845 "mRNA cap
            binding complex" evidence=ISO] [GO:0005846 "nuclear cap binding
            complex" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
            evidence=IEA;ISO] [GO:0006408 "snRNA export from nucleus"
            evidence=ISS] [GO:0006417 "regulation of translation" evidence=IEA]
            [GO:0006446 "regulation of translational initiation" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=ISS] [GO:0031047 "gene
            silencing by RNA" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
            spliceosome" evidence=ISO;ISS] [GO:0046833 "positive regulation of
            RNA export from nucleus" evidence=ISS] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005730
            "nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1596188 GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
            GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845
            GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
            GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
            PANTHER:PTHR18847 KO:K12883 GeneTree:ENSGT00390000003197
            OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:BC161994
            IPI:IPI00192753 RefSeq:NP_001102995.1 RefSeq:XP_003751123.1
            UniGene:Rn.204538 ProteinModelPortal:B1WC40 SMR:B1WC40
            STRING:B1WC40 PhosphoSite:B1WC40 PRIDE:B1WC40
            Ensembl:ENSRNOT00000002381 GeneID:100911481 GeneID:689116
            KEGG:rno:100911481 KEGG:rno:689116 UCSC:RGD:1596188 CTD:80235
            NextBio:737969 Genevestigator:B1WC40 Uniprot:B1WC40
        Length = 156

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 78/128 (60%), Positives = 92/128 (71%)

Query:    42 KLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDK 101
             +LS YRD+ F G  EE E+ L  S T+YVGN+SFYTTEEQIYELFS++G+IKKIIMGLDK
Sbjct:    16 ELSEYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75

Query:   102 NSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXVR 161
               KT CGFCF  +YSR D E+A++YI+GT LDDR IR D+D GF              VR
Sbjct:    76 MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVR 135

Query:   162 DEYRTDYD 169
             DEYR DYD
Sbjct:   136 DEYREDYD 143


>FB|FBgn0022943 [details] [associations]
            symbol:Cbp20 "cap binding protein 20" species:7227
            "Drosophila melanogaster" [GO:0000339 "RNA cap binding"
            evidence=ISS] [GO:0005846 "nuclear cap binding complex"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005681
            "spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
            [GO:0005875 "microtubule associated complex" evidence=IDA]
            [GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0045071 "negative
            regulation of viral genome replication" evidence=IMP] [GO:0035195
            "gene silencing by miRNA" evidence=IMP] [GO:0030422 "production of
            siRNA involved in RNA interference" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
            GO:GO:0005875 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045071 GO:GO:0030422 GO:GO:0071011 GO:GO:0000398
            GO:GO:0071013 eggNOG:COG0724 GO:GO:0006370 GO:GO:0031053
            GO:GO:0000339 PANTHER:PTHR18847 HSSP:P52298 KO:K12883
            GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AJ238969
            EMBL:AY070578 RefSeq:NP_524396.1 UniGene:Dm.2405
            ProteinModelPortal:Q9V3L6 SMR:Q9V3L6 IntAct:Q9V3L6 MINT:MINT-987792
            STRING:Q9V3L6 PaxDb:Q9V3L6 PRIDE:Q9V3L6 EnsemblMetazoa:FBtr0083551
            GeneID:42166 KEGG:dme:Dmel_CG12357 UCSC:CG12357-RA CTD:42166
            FlyBase:FBgn0022943 InParanoid:Q9V3L6 OrthoDB:EOG4K0P4N
            PhylomeDB:Q9V3L6 GenomeRNAi:42166 NextBio:827474 Bgee:Q9V3L6
            Uniprot:Q9V3L6
        Length = 154

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 72/128 (56%), Positives = 93/128 (72%)

Query:    42 KLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDK 101
             +LS+YRD+ F G++ E E +L  S T+YVGN+SFYTTEEQI+ELFSR G+++ I+MGLDK
Sbjct:     6 ELSSYRDQHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDK 65

Query:   102 NSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXVR 161
               KTPCGFCF  +Y R + E A+++++GT LDDR IRVD+D GF              VR
Sbjct:    66 YKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRLIRVDWDAGFVEGRQYGRGKTGGQVR 125

Query:   162 DEYRTDYD 169
             DEYRTDYD
Sbjct:   126 DEYRTDYD 133


>UNIPROTKB|B5G279 [details] [associations]
            symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
            species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
            7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
            splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
            GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
            GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
            GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
            PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
            UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
            GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
        Length = 168

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 77/148 (52%), Positives = 102/148 (68%)

Query:    22 ISSLLLGELSAMASLFKDQRKLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQ 81
             +S LL   LS + S      ++S YRD+ F G+++  E++L  S+T+YVGN+SFYTTEEQ
Sbjct:     1 MSGLLHTTLSGLNS--DSYCEISQYRDQHFRGSRQLQEKSLKISSTLYVGNLSFYTTEEQ 58

Query:    82 IYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141
             I ELFS+ G++K+I+MGLDK  KTPCGFCF  +Y+R D E A+++I+GT LDDR IR D+
Sbjct:    59 IQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAMRFINGTRLDDRIIRTDW 118

Query:   142 DWGFXXXXXXXXXXXXXXVRDEYRTDYD 169
             D GF              VRDEYRTDYD
Sbjct:   119 DAGFKEGRQYGRGKTGGQVRDEYRTDYD 146


>UNIPROTKB|C0H859 [details] [associations]
            symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
            species:8030 "Salmo salar" [GO:0000340 "RNA 7-methylguanosine cap
            binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
            evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
            "mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
            "positive regulation of RNA export from nucleus" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
            GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
            GO:GO:0006408 EMBL:BT043732 EMBL:BT058515 EMBL:BT060223
            UniGene:Ssa.8109 ProteinModelPortal:C0H859 Uniprot:C0H859
        Length = 155

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 73/141 (51%), Positives = 98/141 (69%)

Query:    31 SAMASLFKDQR-KLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRA 89
             S + +LF D    +S YRD+ F G + E E+ L  + T+YVGN+SFYTTEEQ+YELFS++
Sbjct:     3 SKLNALFSDSYVDVSQYRDQHFKGNRYEQEKLLKQANTLYVGNLSFYTTEEQVYELFSKS 62

Query:    90 GEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXX 149
             G++K+II+GLDK  KT CGFCF  +Y+R D E+A+++++GT LDDR IR D+D GF    
Sbjct:    63 GDVKRIIIGLDKVKKTACGFCFVEYYTRTDAENAMRFVNGTRLDDRIIRTDWDAGFKEGR 122

Query:   150 XXXXXXXXXXVRDEYRTDYDP 170
                       VRDEYR DYDP
Sbjct:   123 QYGRGKSGGQVRDEYRQDYDP 143


>WB|WBGene00009141 [details] [associations]
            symbol:ncbp-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0016246 "RNA interference" evidence=IMP] [GO:0006898
            "receptor-mediated endocytosis" evidence=IMP] [GO:0002009
            "morphogenesis of an epithelium" evidence=IMP] [GO:0008340
            "determination of adult lifespan" evidence=IMP] [GO:0042127
            "regulation of cell proliferation" evidence=IMP] [GO:0040020
            "regulation of meiosis" evidence=IMP] [GO:0040022 "feminization of
            hermaphroditic germ-line" evidence=IMP] [GO:0008406 "gonad
            development" evidence=IMP] [GO:0016477 "cell migration"
            evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0005635 "nuclear envelope" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
            GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0005635
            GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0016246
            GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 GO:GO:0040020
            GO:GO:0040022 eggNOG:COG0724 GO:GO:0006370 HOGENOM:HOG000217589
            PANTHER:PTHR18847 HSSP:P52298 GeneTree:ENSGT00390000003197
            EMBL:Z78419 PIR:T21382 RefSeq:NP_001250552.1 RefSeq:NP_001250553.1
            RefSeq:NP_001250554.1 ProteinModelPortal:Q93594 STRING:Q93594
            PaxDb:Q93594 GeneID:184953 KEGG:cel:CELE_F26A3.2 UCSC:F26A3.2
            CTD:184953 WormBase:F26A3.2a WormBase:F26A3.2b WormBase:F26A3.2c
            InParanoid:Q93594 OMA:YRTDYDV NextBio:926534 Uniprot:Q93594
        Length = 158

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 70/131 (53%), Positives = 94/131 (71%)

Query:    41 RKLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLD 100
             +++SAYRD+R+ GT  + E AL  S T+YVGN+S+YT E+Q+YELF RAG+++++IMGLD
Sbjct:    12 KEISAYRDQRYQGTVRDQETALRTSCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLD 71

Query:   101 KNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXV 160
             +  KTPCGFCF  +Y+RED E A++ IS T +DDR IR D+D GF              V
Sbjct:    72 RFKKTPCGFCFVEYYTREDAELALQNISNTRMDDRVIRADWDAGFIEGRQYGRGKHGGQV 131

Query:   161 RDEYRTDYDPD 171
             RDEYR DYDP+
Sbjct:   132 RDEYRKDYDPE 142


>UNIPROTKB|Q5ZKR5 [details] [associations]
            symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
            species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=IEA] [GO:0006417
            "regulation of translation" evidence=IEA] [GO:0031047 "gene
            silencing by RNA" evidence=IEA] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
            spliceosome" evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
            GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
            HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
            HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
            OMA:YRTDYDV EMBL:AJ720019 IPI:IPI00603887 RefSeq:NP_001006430.1
            UniGene:Gga.6356 ProteinModelPortal:Q5ZKR5 SMR:Q5ZKR5
            Ensembl:ENSGALT00000009239 GeneID:422214 KEGG:gga:422214
            InParanoid:Q5ZKR5 NextBio:20824880 Uniprot:Q5ZKR5
        Length = 168

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 76/148 (51%), Positives = 101/148 (68%)

Query:    22 ISSLLLGELSAMASLFKDQRKLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQ 81
             +S LL   LS + S      ++S YRD+ F G+++  E+ L  S+T+YVGN+SFYTTEEQ
Sbjct:     1 MSGLLHTTLSGLNS--DSYCEISRYRDQHFRGSKKLQEKFLKISSTLYVGNLSFYTTEEQ 58

Query:    82 IYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141
             I ELFS+ G++K+I+MGLDK  KTPCGFCF  +Y+R D E A+++I+GT LDDR +R D+
Sbjct:    59 IQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAMRFINGTRLDDRIVRTDW 118

Query:   142 DWGFXXXXXXXXXXXXXXVRDEYRTDYD 169
             D GF              VRDEYRTDYD
Sbjct:   119 DAGFKEGRQYGRGKTGGQVRDEYRTDYD 146


>UNIPROTKB|C1BY64 [details] [associations]
            symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
            species:8010 "Esox lucius" [GO:0000340 "RNA 7-methylguanosine cap
            binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
            evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
            "mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
            "positive regulation of RNA export from nucleus" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
            GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
            GO:GO:0006408 EMBL:BT079543 ProteinModelPortal:C1BY64
            Uniprot:C1BY64
        Length = 155

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 70/128 (54%), Positives = 92/128 (71%)

Query:    43 LSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKN 102
             +S YRD+ F G + E E+ L  S T+YVGN+SFYTTEEQ+YELFS++G++K+II+GLDK 
Sbjct:    16 VSQYRDQHFKGNRYEQEKLLKQSNTLYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDKV 75

Query:   103 SKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXVRD 162
              KT CGFCF  +Y+R D E+A+++++GT LDDR IR D+D GF              VRD
Sbjct:    76 KKTACGFCFVEYYTRADAENAMRFVNGTRLDDRIIRTDWDAGFKEGRQYGRGKSGGQVRD 135

Query:   163 EYRTDYDP 170
             EYR DYDP
Sbjct:   136 EYRQDYDP 143


>UNIPROTKB|F1NIR6 [details] [associations]
            symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
            species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0045292
            "mRNA cis splicing, via spliceosome" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 PANTHER:PTHR18847
            GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AADN02020536
            IPI:IPI00597191 ProteinModelPortal:F1NIR6
            Ensembl:ENSGALT00000011075 Uniprot:F1NIR6
        Length = 158

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 74/127 (58%), Positives = 90/127 (70%)

Query:    43 LSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKN 102
             LS YRD+ F GT+ + E  L  S T+YVGN+SFYTTEEQI+ELF ++G+IKKIIMGLDK 
Sbjct:    19 LSQYRDQHFRGTRYDQERLLRKSCTLYVGNLSFYTTEEQIHELFGKSGDIKKIIMGLDKV 78

Query:   103 SKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXVRD 162
              KT CGFCF  +Y+R D E+A++YI+GT LDDR IR D+D GF              VRD
Sbjct:    79 KKTACGFCFVEYYARGDAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRD 138

Query:   163 EYRTDYD 169
             EYR DYD
Sbjct:   139 EYRQDYD 145


>ZFIN|ZDB-GENE-020419-31 [details] [associations]
            symbol:ncbp2 "nuclear cap binding protein subunit 2"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA;ISS]
            [GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
            evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
            [GO:0046833 "positive regulation of RNA export from nucleus"
            evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap binding"
            evidence=ISS] [GO:0006408 "snRNA export from nucleus" evidence=ISS]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
            [GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
            capping" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-020419-31
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
            GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
            HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
            HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
            OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:AY099530 EMBL:AL953867
            EMBL:BC083529 IPI:IPI00487113 RefSeq:NP_775356.1 UniGene:Dr.83993
            ProteinModelPortal:Q8JGR6 SMR:Q8JGR6 STRING:Q8JGR6
            Ensembl:ENSDART00000008365 GeneID:192325 KEGG:dre:192325
            InParanoid:Q8JGR6 NextBio:20797161 Bgee:Q8JGR6 Uniprot:Q8JGR6
        Length = 155

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 71/137 (51%), Positives = 95/137 (69%)

Query:    35 SLFKDQR-KLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIK 93
             +LF D    +S YRD+ F G + E E+ L  S T+YVGN+SFYTTEEQ++ELF++ G++K
Sbjct:     7 ALFSDSYVDVSQYRDQHFKGNRYEQEKLLKQSATLYVGNLSFYTTEEQVHELFAKCGDVK 66

Query:    94 KIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXX 153
             +II+GLDK  KT CGFCF  +Y+R D E+A+++++GT LDDR IR D+D GF        
Sbjct:    67 RIIIGLDKIKKTACGFCFVEYYTRADAENAMRFVNGTRLDDRIIRTDWDAGFKEGRQYGR 126

Query:   154 XXXXXXVRDEYRTDYDP 170
                   VRDEYR DYDP
Sbjct:   127 GKSGGQVRDEYRQDYDP 143


>UNIPROTKB|P52299 [details] [associations]
            symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
            species:8355 "Xenopus laevis" [GO:0000184 "nuclear-transcribed mRNA
            catabolic process, nonsense-mediated decay" evidence=ISS]
            [GO:0000340 "RNA 7-methylguanosine cap binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005845
            "mRNA cap binding complex" evidence=ISS] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=ISS] [GO:0006408 "snRNA
            export from nucleus" evidence=IDA] [GO:0006446 "regulation of
            translational initiation" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISS] [GO:0046833 "positive regulation of RNA export from
            nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
            Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
            GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 HOVERGEN:HBG052581
            PANTHER:PTHR18847 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
            EMBL:BC072902 EMBL:X84788 PIR:I51602 RefSeq:NP_001167476.1
            UniGene:Xl.43439 UniGene:Xl.81730 ProteinModelPortal:P52299
            SMR:P52299 GeneID:100380998 KEGG:xla:100380998
            Xenbase:XB-GENE-1005792 Uniprot:P52299
        Length = 153

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 72/139 (51%), Positives = 95/139 (68%)

Query:    32 AMASLFKDQR-KLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAG 90
             A+++L  D    LS YRD+ F G + + E  L  S T+YVGN+SFYTTEEQI+ELFS++G
Sbjct:     2 ALSALRSDSYVDLSQYRDQHFRGNRSDQESLLKQSCTLYVGNLSFYTTEEQIHELFSKSG 61

Query:    91 EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXX 150
             ++K+I+MGLDK  KT CGFCF  +Y+R D E A+++I+GT LDDR +R D+D GF     
Sbjct:    62 DVKRIVMGLDKVKKTACGFCFVEYYTRADAEQAMRFINGTRLDDRIVRTDWDAGFKEGRQ 121

Query:   151 XXXXXXXXXVRDEYRTDYD 169
                      VRDEYR DYD
Sbjct:   122 YGRGKSGGQVRDEYRQDYD 140


>UNIPROTKB|Q6DES0 [details] [associations]
            symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0000340 "RNA
            7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
            export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISS] [GO:0046833 "positive regulation of RNA export from
            nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
            GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
            HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
            HSSP:P52298 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
            EMBL:CR761328 EMBL:BC077024 RefSeq:NP_001006879.1 UniGene:Str.170
            ProteinModelPortal:Q6DES0 SMR:Q6DES0 STRING:Q6DES0 PRIDE:Q6DES0
            GeneID:448671 KEGG:xtr:448671 Xenbase:XB-GENE-1005786
            InParanoid:Q6DES0 Bgee:Q6DES0 Uniprot:Q6DES0
        Length = 153

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 74/139 (53%), Positives = 95/139 (68%)

Query:    32 AMASLFKDQR-KLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAG 90
             A+ +L  D   +LS YRD+ F G + + E  L  S T+YVGN+SFYTTEEQI+ELFS++G
Sbjct:     2 ALGALKSDSYVELSQYRDQHFRGNRSDQECLLKHSCTLYVGNLSFYTTEEQIHELFSKSG 61

Query:    91 EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXX 150
             ++KKI+MGLDK  KT CGFCF  +Y+R D E A+++I+GT LDDR IR D+D GF     
Sbjct:    62 DVKKIVMGLDKIKKTACGFCFVEYYTRTDAEQAMRFINGTRLDDRIIRTDWDAGFKEGRQ 121

Query:   151 XXXXXXXXXVRDEYRTDYD 169
                      VRDEYR DYD
Sbjct:   122 YGRGKSGGQVRDEYRQDYD 140


>UNIPROTKB|A2SW84 [details] [associations]
            symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
            species:119488 "Siniperca chuatsi" [GO:0000340 "RNA
            7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
            export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISS] [GO:0046833 "positive regulation of RNA export from
            nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
            GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847
            GO:GO:0046833 GO:GO:0006408 EMBL:DQ359156 ProteinModelPortal:A2SW84
            SMR:A2SW84 Uniprot:A2SW84
        Length = 165

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 68/128 (53%), Positives = 91/128 (71%)

Query:    43 LSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKN 102
             +S YRD+ F G + + E+ L  S T+YVGN+SFYTTEEQ++ELFS++G++K+II+GLDK 
Sbjct:    16 VSQYRDQHFKGNRYDQEKLLKQSHTLYVGNLSFYTTEEQVHELFSKSGDVKRIIIGLDKV 75

Query:   103 SKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXVRD 162
              KT CGFCF  +Y+R   E+A+++I+GT LDDR IR D+D GF              VRD
Sbjct:    76 KKTACGFCFVEYYTRAGAENAMRFINGTRLDDRIIRADWDAGFKEGRQYGRGKSGGQVRD 135

Query:   163 EYRTDYDP 170
             EYR DYDP
Sbjct:   136 EYRQDYDP 143


>UNIPROTKB|I3LIU9 [details] [associations]
            symbol:LOC100621482 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
            Ensembl:ENSSSCT00000027593 OMA:GYGKMCK Uniprot:I3LIU9
        Length = 148

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 72/128 (56%), Positives = 86/128 (67%)

Query:    42 KLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDK 101
             +LS YRD+ F G  EE E+ L  S T+YVGN+SFYTTEEQIYELFS++G+IKKIIM    
Sbjct:    16 ELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMA--- 72

Query:   102 NSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXVR 161
                  CGFCF  +YSR D E+A++YI+GT LDDR IR D+D GF              VR
Sbjct:    73 -----CGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVR 127

Query:   162 DEYRTDYD 169
             DEYR DYD
Sbjct:   128 DEYRQDYD 135


>UNIPROTKB|G4N872 [details] [associations]
            symbol:MGG_06296 "Nuclear cap-binding protein subunit 2"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 EMBL:CM001234
            GO:GO:0000243 GO:GO:0000339 PANTHER:PTHR18847 GO:GO:0005846
            KO:K12883 RefSeq:XP_003717292.1 ProteinModelPortal:G4N872
            SMR:G4N872 EnsemblFungi:MGG_06296T0 GeneID:2684451
            KEGG:mgr:MGG_06296 Uniprot:G4N872
        Length = 185

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 64/111 (57%), Positives = 79/111 (71%)

Query:    59 EEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSRE 118
             E+ L  STT+YVGN+SFYTTEEQ+YELFS+ GEIK+++MGLD+ +KTPCGFCF  +Y+ +
Sbjct:    41 EDPLANSTTLYVGNLSFYTTEEQVYELFSKCGEIKRLVMGLDRFNKTPCGFCFVEYYTHQ 100

Query:   119 DTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXVRDEYRTDYD 169
             D  D +KYI GT LD+R IR D D GF              VRDEYR DYD
Sbjct:   101 DAIDCMKYIGGTKLDERVIRTDLDPGFEEGRQYGRGKSGGQVRDEYREDYD 151


>UNIPROTKB|E2RBE5 [details] [associations]
            symbol:NCBP2L "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            OMA:GFREGQQ PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
            EMBL:AAEX03026753 Ensembl:ENSCAFT00000028568 Uniprot:E2RBE5
        Length = 163

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 63/128 (49%), Positives = 87/128 (67%)

Query:    42 KLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDK 101
             +LS Y+D++F G  +E E+ L  S+T+YVGN+SFYTTEEQIYELFSR G++K + MGLDK
Sbjct:    17 ELSEYQDQQFGGDNDEQEKLLKDSSTLYVGNLSFYTTEEQIYELFSRCGDVKNVFMGLDK 76

Query:   102 NSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXVR 161
               KT CGFCF  +++R D E+A+ +++GT LDD  I  D+D GF              +R
Sbjct:    77 IKKTACGFCFIEYHNRFDAENAMLFLNGTCLDDHTICTDWDLGFREGRQYSHHRSGGQIR 136

Query:   162 DEYRTDYD 169
             +E+R D D
Sbjct:   137 NEFREDSD 144


>UNIPROTKB|F1RXK2 [details] [associations]
            symbol:NCBP2L "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            OMA:GFREGQQ PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
            EMBL:FP245415 ProteinModelPortal:F1RXK2 Ensembl:ENSSSCT00000013736
            Uniprot:F1RXK2
        Length = 156

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 61/126 (48%), Positives = 85/126 (67%)

Query:    42 KLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDK 101
             +LS Y+D++F G  EE E+ L+ S+T+YV N+S YTTEEQI+ELFSR G++K + MGLD 
Sbjct:    15 ELSEYQDQQFRGDNEEHEKLLMESSTLYVENLSIYTTEEQIFELFSRCGDVKNVFMGLDN 74

Query:   102 NSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXVR 161
               KT CGFCF  ++ R D E+A+++++GT+LDDR I   +D GF              VR
Sbjct:    75 IKKTACGFCFVEYHLRADAENAMRFLNGTLLDDRIIHTKWDIGFKEGRQYAHGRCGGQVR 134

Query:   162 DEYRTD 167
             DE+R D
Sbjct:   135 DEFRED 140


>POMBASE|SPBC13A2.01c [details] [associations]
            symbol:SPBC13A2.01c "nuclear cap-binding complex small
            subunit (predicted)" species:4896 "Schizosaccharomyces pombe"
            [GO:0000243 "commitment complex" evidence=ISO] [GO:0000339 "RNA cap
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005819 "spindle" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005846 "nuclear cap binding complex"
            evidence=ISO] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
            evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC13A2.01c
            GO:GO:0005829 GO:GO:0048471 GO:GO:0005819 GO:GO:0000166
            EMBL:CU329671 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
            GO:GO:0051028 GO:GO:0000243 eggNOG:COG0724 GO:GO:0045292
            GO:GO:0000339 HOGENOM:HOG000217589 PANTHER:PTHR18847 GO:GO:0005846
            HSSP:P52298 KO:K12883 RefSeq:NP_596414.1 ProteinModelPortal:Q9P383
            SMR:Q9P383 STRING:Q9P383 EnsemblFungi:SPBC13A2.01c.1 GeneID:2539791
            KEGG:spo:SPBC13A2.01c OMA:EIRRIIM OrthoDB:EOG4W11PG
            NextBio:20800940 Uniprot:Q9P383
        Length = 182

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 66/138 (47%), Positives = 87/138 (63%)

Query:    33 MASLFKDQRKLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEI 92
             MAS+ +    +S Y  RRF       + A+  S  VYVGN+SFYTTEEQIY LFS+ GEI
Sbjct:     1 MASITRLDA-VSPYLIRRFKNDLRALD-AVKQSNCVYVGNLSFYTTEEQIYALFSKCGEI 58

Query:    93 KKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXX 152
             ++IIMG+D+ +KTPCGFCF  ++  +D  D++KYIS T LD+R IR D D G+       
Sbjct:    59 RRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYISRTSLDERIIRADLDHGYEEGRQYG 118

Query:   153 XXXXXXXVRDEYRTDYDP 170
                    VRDE R ++DP
Sbjct:   119 RGASGGQVRDEMREEFDP 136


>UNIPROTKB|A6PVI3 [details] [associations]
            symbol:NCBP2L "Nuclear cap-binding protein subunit 2-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0045292
            "mRNA cis splicing, via spliceosome" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AL109946
            IPI:IPI00398274 ProteinModelPortal:A6PVI3 SMR:A6PVI3 PRIDE:A6PVI3
            Ensembl:ENST00000372379 GeneCards:GC0XP107037 HGNC:HGNC:31795
            HPA:HPA010664 neXtProt:NX_A6PVI3 HOGENOM:HOG000217589
            HOVERGEN:HBG052581 InParanoid:A6PVI3 OMA:GFREGQQ OrthoDB:EOG470TJG
            Genevestigator:A6PVI3 PANTHER:PTHR18847 Uniprot:A6PVI3
        Length = 153

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 62/134 (46%), Positives = 88/134 (65%)

Query:    36 LFKDQR-KLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKK 94
             L KD   +LS YRD +F G + + E+ L  S+T+ +GN+SFYTTEE+I+ELFSR+ +I+ 
Sbjct:     8 LCKDPALELSCYRDHQFSGRKFQQEKLLKESSTLNMGNLSFYTTEEKIHELFSRS-DIRN 66

Query:    95 IIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXX 154
             I MGLDK  KT CGFCF   ++R D E+A+++++GT LD+  I  D+D GF         
Sbjct:    67 IFMGLDKIKKTACGFCFVECHNRADAENAMRFLTGTCLDEWIICTDWDVGFREGQQYGRG 126

Query:   155 XXXXXVRDEYRTDY 168
                  VRDE+R D+
Sbjct:   127 KSGGQVRDEFREDF 140


>SGD|S000006099 [details] [associations]
            symbol:CBC2 "Small subunit of the heterodimeric cap binding
            complex" species:4932 "Saccharomyces cerevisiae" [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0045292 "mRNA cis
            splicing, via spliceosome" evidence=IEA] [GO:0000339 "RNA cap
            binding" evidence=IEA;ISS;IDA] [GO:0000243 "commitment complex"
            evidence=IDA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0048471
            "perinuclear region of cytoplasm" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0006810 "transport" evidence=IEA] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 SGD:S000006099 GO:GO:0048471 GO:GO:0000184
            GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006949 GO:GO:0051028
            GO:GO:0000398 GO:GO:0000243 eggNOG:COG0724 GO:GO:0000339
            HOGENOM:HOG000217589 PANTHER:PTHR18847 GO:GO:0005846 KO:K12883
            GeneTree:ENSGT00390000003197 OrthoDB:EOG4W11PG EMBL:U39665
            EMBL:Z73534 EMBL:AY692949 PIR:S65190 RefSeq:NP_015147.1
            ProteinModelPortal:Q08920 SMR:Q08920 DIP:DIP-1117N IntAct:Q08920
            MINT:MINT-552911 STRING:Q08920 PaxDb:Q08920 EnsemblFungi:YPL178W
            GeneID:855925 KEGG:sce:YPL178W CYGD:YPL178w OMA:CGFCFII
            NextBio:980654 Genevestigator:Q08920 GermOnline:YPL178W
            Uniprot:Q08920
        Length = 208

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 58/121 (47%), Positives = 79/121 (65%)

Query:    49 RRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCG 108
             RR P   +E  E++  S+T+YVGN+SFYT+EEQIYELFS+ G IK+IIMGLD+   TPCG
Sbjct:    30 RRNPNGLQELRESM-KSSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCG 88

Query:   109 FCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXVRDEYRTDY 168
             FCF ++   ++  +A+KY+S T LD++ I +D D GF              V DE R D+
Sbjct:    89 FCFIIYSCPDEALNALKYLSDTKLDEKTITIDLDPGFEDGRQFGRGKSGGQVSDELRFDF 148

Query:   169 D 169
             D
Sbjct:   149 D 149


>GENEDB_PFALCIPARUM|PFD0750w [details] [associations]
            symbol:PFD0750w "nuclear cap-binding protein,
            putative" species:5833 "Plasmodium falciparum" [GO:0005846 "nuclear
            cap binding complex" evidence=ISS] [GO:0000339 "RNA cap binding"
            evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL844503 GO:GO:0000339
            HOGENOM:HOG000217589 PANTHER:PTHR18847 GO:GO:0005846 HSSP:P52298
            KO:K12883 RefSeq:XP_001351463.1 ProteinModelPortal:Q8I1T2
            PRIDE:Q8I1T2 EnsemblProtists:PFD0750w:mRNA GeneID:812555
            KEGG:pfa:PFD0750w EuPathDB:PlasmoDB:PF3D7_0415500
            ProtClustDB:CLSZ2433273 Uniprot:Q8I1T2
        Length = 234

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 57/139 (41%), Positives = 81/139 (58%)

Query:    33 MASLFKDQRKLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEI 92
             MA L+++  K   Y DR      EE+++ +  S TVY+GN+S YTT++QIYE  S+AG++
Sbjct:     1 MAHLYEEVYKKRKYFDRALCNDYEEWQDKIRESKTVYIGNLSIYTTQQQIYEHMSKAGDV 60

Query:    93 KKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXX 152
             + IIMGL +  K+PCGFCF ++  +E    AV +++ +ILD R IRVD D G        
Sbjct:    61 ENIIMGLHRTEKSPCGFCFVVYKKKEGYTQAVNFLNNSILDGRIIRVDEDLGIIGKRKYG 120

Query:   153 XXXXXXXVRDEYRTDYDPD 171
                     RDE    YD D
Sbjct:   121 RGKTGVQKRDERNKFYDED 139


>UNIPROTKB|Q8I1T2 [details] [associations]
            symbol:PFD0750w "Nuclear cap-binding protein, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0000339 "RNA cap
            binding" evidence=ISS] [GO:0005846 "nuclear cap binding complex"
            evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL844503 GO:GO:0000339
            HOGENOM:HOG000217589 PANTHER:PTHR18847 GO:GO:0005846 HSSP:P52298
            KO:K12883 RefSeq:XP_001351463.1 ProteinModelPortal:Q8I1T2
            PRIDE:Q8I1T2 EnsemblProtists:PFD0750w:mRNA GeneID:812555
            KEGG:pfa:PFD0750w EuPathDB:PlasmoDB:PF3D7_0415500
            ProtClustDB:CLSZ2433273 Uniprot:Q8I1T2
        Length = 234

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 57/139 (41%), Positives = 81/139 (58%)

Query:    33 MASLFKDQRKLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEI 92
             MA L+++  K   Y DR      EE+++ +  S TVY+GN+S YTT++QIYE  S+AG++
Sbjct:     1 MAHLYEEVYKKRKYFDRALCNDYEEWQDKIRESKTVYIGNLSIYTTQQQIYEHMSKAGDV 60

Query:    93 KKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXX 152
             + IIMGL +  K+PCGFCF ++  +E    AV +++ +ILD R IRVD D G        
Sbjct:    61 ENIIMGLHRTEKSPCGFCFVVYKKKEGYTQAVNFLNNSILDGRIIRVDEDLGIIGKRKYG 120

Query:   153 XXXXXXXVRDEYRTDYDPD 171
                     RDE    YD D
Sbjct:   121 RGKTGVQKRDERNKFYDED 139


>CGD|CAL0001895 [details] [associations]
            symbol:orf19.763 species:5476 "Candida albicans" [GO:0005829
            "cytosol" evidence=IEA] [GO:0005819 "spindle" evidence=IEA]
            [GO:0000243 "commitment complex" evidence=IEA] [GO:0005846 "nuclear
            cap binding complex" evidence=IEA] [GO:0000339 "RNA cap binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            CGD:CAL0001895 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            eggNOG:COG0724 EMBL:AACQ01000123 EMBL:AACQ01000122
            PANTHER:PTHR18847 KO:K12883 RefSeq:XP_713573.1 RefSeq:XP_713608.1
            ProteinModelPortal:Q59VH0 SMR:Q59VH0 STRING:Q59VH0 GeneID:3644742
            GeneID:3644772 KEGG:cal:CaO19.763 KEGG:cal:CaO19.8383
            Uniprot:Q59VH0
        Length = 224

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 53/104 (50%), Positives = 72/104 (69%)

Query:    42 KLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDK 101
             K SAY  R+      E E A+  S TVYVGN+S +TTEEQI+ELFS+ G I +IIMGLD+
Sbjct:    17 KPSAYLIRKARHNYGELERAM-TSKTVYVGNLSHFTTEEQIHELFSKCGAIDRIIMGLDR 75

Query:   102 NSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGF 145
             N  TPCGFCF ++ + + + +A+K++  TILD + I +D D GF
Sbjct:    76 NKLTPCGFCFVIYRTEQGSLNAMKFLQSTILDSQSISIDLDPGF 119


>ASPGD|ASPL0000003062 [details] [associations]
            symbol:AN6142 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 HOGENOM:HOG000217589
            PANTHER:PTHR18847 OMA:YRTDYDV ProteinModelPortal:C8V2B3
            EnsemblFungi:CADANIAT00006868 Uniprot:C8V2B3
        Length = 185

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 57/140 (40%), Positives = 81/140 (57%)

Query:    43 LSAYRDRRFPGTQEEFE----EALLASTTVYVGNMSFYTTEEQIYE------LFSR--AG 90
             LS  + R++   + E +    E L  +TT+YVGN+S  ++   + +      L +R   G
Sbjct:    21 LSKNKRRKYSSDESEEQKDPMEGLRDATTLYVGNLSTSSSPSSVSQPHNPDLLLTRFRCG 80

Query:    91 EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXX 150
             EIK+++MGLD+ +KTPCGFCF  +Y+ +D  D +KYI GT LD+R IR D D GF     
Sbjct:    81 EIKRLVMGLDRYNKTPCGFCFVEYYTHQDALDCLKYIGGTKLDERIIRTDLDPGFEEGRQ 140

Query:   151 XXXXXXXXXVRDEYRTDYDP 170
                      VRDEYR +YDP
Sbjct:   141 YGRGKSGGQVRDEYREEYDP 160


>UNIPROTKB|B3KSB0 [details] [associations]
            symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0045292
            "mRNA cis splicing, via spliceosome" evidence=IEA]
            InterPro:IPR012677 InterPro:IPR027157 GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:CH471191 HOGENOM:HOG000217589
            OrthoDB:EOG470TJG PANTHER:PTHR18847 UniGene:Hs.591671
            HGNC:HGNC:7659 ChiTaRS:NCBP2 EMBL:AC011322 EMBL:AK093216
            IPI:IPI00789410 SMR:B3KSB0 STRING:B3KSB0 Ensembl:ENST00000422610
            Ensembl:ENST00000447325 Uniprot:B3KSB0
        Length = 86

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:    97 MGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXX 156
             MGLDK  KT CGFCF  +YSR D E+A++YI+GT LDDR IR D+D GF           
Sbjct:     1 MGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRS 60

Query:   157 XXXVRDEYRTDYD 169
                VRDEYR DYD
Sbjct:    61 GGQVRDEYRQDYD 73


>UNIPROTKB|C9JQX9 [details] [associations]
            symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0045292
            "mRNA cis splicing, via spliceosome" evidence=IEA]
            InterPro:IPR012677 InterPro:IPR027157 GO:GO:0000166
            Gene3D:3.30.70.330 PANTHER:PTHR18847 HGNC:HGNC:7659 ChiTaRS:NCBP2
            EMBL:AC011322 IPI:IPI00924867 ProteinModelPortal:C9JQX9 SMR:C9JQX9
            STRING:C9JQX9 Ensembl:ENST00000411704 ArrayExpress:C9JQX9
            Bgee:C9JQX9 Uniprot:C9JQX9
        Length = 83

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 41/73 (56%), Positives = 47/73 (64%)

Query:    97 MGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXX 156
             MGLDK  KT CGFCF  +YSR D E+A++YI+GT LDDR IR D+D GF           
Sbjct:     1 MGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRS 60

Query:   157 XXXVRDEYRTDYD 169
                VRDEYR DYD
Sbjct:    61 GGQVRDEYRQDYD 73


>UNIPROTKB|E9PAR5 [details] [associations]
            symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
            species:9606 "Homo sapiens" [GO:0000339 "RNA cap binding"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] InterPro:IPR027157 GO:GO:0005634
            PANTHER:PTHR18847 KO:K12883 CTD:22916 RefSeq:NP_001036005.1
            UniGene:Hs.591671 DNASU:22916 GeneID:22916 KEGG:hsa:22916
            HGNC:HGNC:7659 ChiTaRS:NCBP2 GenomeRNAi:22916 NextBio:43603
            EMBL:AC011322 IPI:IPI00784189 ProteinModelPortal:E9PAR5 SMR:E9PAR5
            PRIDE:E9PAR5 Ensembl:ENST00000427641 UCSC:uc003fxe.1
            ArrayExpress:E9PAR5 Bgee:E9PAR5 Uniprot:E9PAR5
        Length = 103

 Score = 119 (46.9 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
 Identities = 25/49 (51%), Positives = 30/49 (61%)

Query:   121 EDAVKYISGTILDDRPIRVDFDWGFXXXXXXXXXXXXXXVRDEYRTDYD 169
             E+A++YI+GT LDDR IR D+D GF              VRDEYR DYD
Sbjct:    42 ENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYD 90

 Score = 53 (23.7 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query:    42 KLSAYRDRRFPGTQEEFEEALLAS 65
             +LS YRD+ F G  EE E+ L  S
Sbjct:    16 ELSQYRDQHFRGDNEEQEKLLKKS 39


>UNIPROTKB|Q28IQ9 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
            development" evidence=ISS] [GO:0016477 "cell migration"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
            regulation of translation" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0048793 "pronephros development"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
            GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
            GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
            RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
            SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
            Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
        Length = 166

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 28/73 (38%), Positives = 49/73 (67%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG ++F TTEE + ++FS+ G++ ++++  D+ SK   GF F  F + ED +DA+  +
Sbjct:     8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|Q9DED4 [details] [associations]
            symbol:cirbp-b "Cold-inducible RNA-binding protein B"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
            "gastrulation" evidence=IMP] [GO:0009409 "response to cold"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
            binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
            "pronephros development" evidence=ISS] [GO:0060212 "negative
            regulation of nuclear-transcribed mRNA poly(A) tail shortening"
            evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
            EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
            HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
            PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
            Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
        Length = 166

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             +++G ++F T EE + ++FS+ G+I ++++  D+ +K   GF F  F + +D +DA+  +
Sbjct:     7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    67 NGKAVDGRQIRVD 79


>UNIPROTKB|Q9PTX2 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
            "response to cold" evidence=ISS] [GO:0009790 "embryo development"
            evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
            [GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
            "neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
            evidence=IEP] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
            [GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
            SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
        Length = 164

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 27/73 (36%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ +  +FS+ G+I+++++  D+ +K   GF F  F + ED +DA+  +
Sbjct:     8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKTVDGRQIRVD 80


>UNIPROTKB|E2R6G2 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
        Length = 172

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|K7EJV5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
        Length = 105

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|K7EMY9 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
        Length = 159

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|K7ENX8 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
        Length = 89

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|K7EPM4 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
            Ensembl:ENST00000586773 Ensembl:ENST00000589235
            Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
        Length = 168

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|K7ER40 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
        Length = 174

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|Q14011 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
            [GO:0030371 "translation repressor activity" evidence=ISS]
            [GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
            "response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
            3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=IDA] [GO:0009409 "response to cold"
            evidence=TAS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
            EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
            RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
            PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
            MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
            REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
            DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
            UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
            neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
            InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
            ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
            ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
            Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
        Length = 172

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|F1S6R1 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:CU929580
            Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
        Length = 172

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|Q5RF83 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
            RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
            SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
            Uniprot:Q5RF83
        Length = 172

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|F6XHA7 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
            OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
            EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
            Uniprot:F6XHA7
        Length = 185

 Score = 135 (52.6 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|P60826 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
            ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
            CTD:1153 Uniprot:P60826
        Length = 172

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>MGI|MGI:893588 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
            "negative regulation of translation" evidence=IDA] [GO:0030371
            "translation repressor activity" evidence=IDA] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
            evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
            EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
            UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
            PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
            Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
            UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
            NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
            GermOnline:ENSMUSG00000045193 Uniprot:P60824
        Length = 172

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>RGD|620756 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030371 "translation repressor activity" evidence=ISO;ISS]
            [GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
            "positive regulation of translation" evidence=ISO;ISS] [GO:0048255
            "mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
            binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
            HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
            IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
            SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
            Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
            Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
        Length = 172

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>SGD|S000003391 [details] [associations]
            symbol:NSR1 "Nucleolar protein that binds nuclear
            localization sequences" species:4932 "Saccharomyces cerevisiae"
            [GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0006950 "response to stress"
            evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
            GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
            GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
            OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
            EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
            ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
            MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
            EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
            HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
            GermOnline:YGR159C Uniprot:P27476
        Length = 414

 Score = 146 (56.5 bits), Expect = 6.5e-09, P = 6.5e-09
 Identities = 26/77 (33%), Positives = 48/77 (62%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             S T+++GN+SF    + I+ELF++ GE+  + +     ++ P GF +  F + ED + A+
Sbjct:   266 SDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKAL 325

Query:   125 KYISGTILDDRPIRVDF 141
               + G  +D+RP+R+DF
Sbjct:   326 DALQGEYIDNRPVRLDF 342


>WB|WBGene00011155 [details] [associations]
            symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
            SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
            PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
            KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
            InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
        Length = 83

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 27/74 (36%), Positives = 42/74 (56%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +VYVGN  F TTEE++   FS  G+I  + +  D+ +  P GF F  F      + AV+ 
Sbjct:     6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65

Query:   127 ISGTILDDRPIRVD 140
             ++G   + RP+RV+
Sbjct:    66 MNGAEFNGRPLRVN 79


>UNIPROTKB|H9L0U4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
        Length = 167

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 25/71 (35%), Positives = 46/71 (64%)

Query:    70 VGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG 129
             VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  ++G
Sbjct:    10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69

Query:   130 TILDDRPIRVD 140
               +D R IRVD
Sbjct:    70 KSVDGRQIRVD 80


>UNIPROTKB|H9L3B3 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
        Length = 172

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 25/71 (35%), Positives = 46/71 (64%)

Query:    70 VGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG 129
             VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  ++G
Sbjct:    10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69

Query:   130 TILDDRPIRVD 140
               +D R IRVD
Sbjct:    70 KSVDGRQIRVD 80


>UNIPROTKB|E2R228 [details] [associations]
            symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
            Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
        Length = 149

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 25/73 (34%), Positives = 45/73 (61%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             +++G ++F T E+ + + FS  G I ++++  D+ ++   GFCF  F + E   DA++ +
Sbjct:     8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67

Query:   128 SGTILDDRPIRVD 140
             +G  LD R IRVD
Sbjct:    68 NGKSLDGRQIRVD 80


>TAIR|locus:2077137 [details] [associations]
            symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
            IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
            ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
            GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
            OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
            Genevestigator:Q9LZT1 Uniprot:Q9LZT1
        Length = 102

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 28/76 (36%), Positives = 45/76 (59%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             S  ++V  +S YTT++ + +LFS  G+IK+  +  D  ++ P GF F  F S +D   A+
Sbjct:     6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query:   125 KYISGTILDDRPIRVD 140
             K + G I+D R I V+
Sbjct:    66 KSLDGKIVDGRLIFVE 81


>UNIPROTKB|O93235 [details] [associations]
            symbol:cirbp-a "Cold-inducible RNA-binding protein A"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
            "response to cold" evidence=IEP] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
            "cell migration" evidence=IMP] [GO:0017148 "negative regulation of
            translation" evidence=ISS] [GO:0019899 "enzyme binding"
            evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
            "translation repressor activity" evidence=ISS] [GO:0034063 "stress
            granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
            translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0048793 "pronephros development"
            evidence=IEP;IMP] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
            field specification" evidence=IMP] [GO:0005840 "ribosome"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
            GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
            GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
            EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
            ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
            CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
            GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
        Length = 166

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 23/73 (31%), Positives = 46/73 (63%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             +++G ++F T E+ + + F++ G I ++++  D+ +K   GF F  F + +D +DA+  +
Sbjct:     7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    67 NGKSVDGRQIRVD 79


>TAIR|locus:2039590 [details] [associations]
            symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
            IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
            ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
            EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
            TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
            PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
            Uniprot:Q1ECN0
        Length = 116

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 25/76 (32%), Positives = 48/76 (63%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             S+T++V  +SF +TEE + + FS+ G++ K+ + +DK    P GF +  F S+E+ E A+
Sbjct:    20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79

Query:   125 KYISGTILDDRPIRVD 140
               ++  ++D R + +D
Sbjct:    80 LELNAQLVDGRVVILD 95


>UNIPROTKB|K7EQR7 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
        Length = 202

 Score = 135 (52.6 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|I3L8K8 [details] [associations]
            symbol:I3L8K8 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000102191 EMBL:CT956011
            Ensembl:ENSSSCT00000026978 OMA:HRISVAF Uniprot:I3L8K8
        Length = 87

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 29/81 (35%), Positives = 43/81 (53%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  TV+VGN+     EE +YELF +AG + K+ +  D++   P  F F  F   E    A
Sbjct:     8 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRDGN-PKSFGFVCFKHPESVSYA 66

Query:   124 VKYISGTILDDRPIRVDFDWG 144
             +  ++G  L  RPI V + +G
Sbjct:    67 IALLNGIRLYGRPINVQYRFG 87


>UNIPROTKB|Q3SZN4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
            HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
            GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
            IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
            Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
            InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
        Length = 213

 Score = 135 (52.6 bits), Expect = 6.2e-08, P = 6.2e-08
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|F5GXV8 [details] [associations]
            symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
            EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
            Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
            Uniprot:F5GXV8
        Length = 149

 Score = 123 (48.4 bits), Expect = 7.2e-08, P = 7.2e-08
 Identities = 29/81 (35%), Positives = 44/81 (54%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  T++VGN+    TEE ++ELF +AG + K+ +  DK+ K P  F F  F        A
Sbjct:     8 ADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGK-PKQFAFVNFKHEVSVPYA 66

Query:   124 VKYISGTILDDRPIRVDFDWG 144
             +  ++G  L  RPI++ F  G
Sbjct:    67 MNLLNGIKLYGRPIKIQFRSG 87


>UNIPROTKB|I3L521 [details] [associations]
            symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
            Ensembl:ENST00000544347 Uniprot:I3L521
        Length = 148

 Score = 123 (48.4 bits), Expect = 7.2e-08, P = 7.2e-08
 Identities = 29/81 (35%), Positives = 44/81 (54%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  T++VGN+    TEE ++ELF +AG + K+ +  DK+ K P  F F  F        A
Sbjct:     5 ADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGK-PKQFAFVNFKHEVSVPYA 63

Query:   124 VKYISGTILDDRPIRVDFDWG 144
             +  ++G  L  RPI++ F  G
Sbjct:    64 MNLLNGIKLYGRPIKIQFRSG 84


>UNIPROTKB|H9KZV5 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
            rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
        Length = 190

 Score = 131 (51.2 bits), Expect = 8.4e-08, P = 8.4e-08
 Identities = 25/71 (35%), Positives = 46/71 (64%)

Query:    70 VGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG 129
             VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  ++G
Sbjct:    10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69

Query:   130 TILDDRPIRVD 140
               +D R IRVD
Sbjct:    70 KSVDGRQIRVD 80


>UNIPROTKB|F5H606 [details] [associations]
            symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
            EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
            Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
            Uniprot:F5H606
        Length = 123

 Score = 122 (48.0 bits), Expect = 9.4e-08, P = 9.4e-08
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  T++VGN+    TEE ++ELF +AG + K+ +  DK+ K P  F F  F        A
Sbjct:     8 ADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGK-PKQFAFVNFKHEVSVPYA 66

Query:   124 VKYISGTILDDRPIRVDF 141
             +  ++G  L  RPI++ F
Sbjct:    67 MNLLNGIKLYGRPIKIQF 84


>UNIPROTKB|J3KP15 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
            Uniprot:J3KP15
        Length = 134

 Score = 122 (48.0 bits), Expect = 9.4e-08, P = 9.4e-08
 Identities = 22/74 (29%), Positives = 43/74 (58%)

Query:    66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125
             T++ V N+++ T+ + +  +F + G +  + +  D+ +K   GF F  F+ + D EDA+ 
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   126 YISGTILDDRPIRV 139
              + G +LD R +RV
Sbjct:    74 AMDGAVLDGRELRV 87


>UNIPROTKB|J3QL05 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
            Uniprot:J3QL05
        Length = 130

 Score = 122 (48.0 bits), Expect = 9.4e-08, P = 9.4e-08
 Identities = 22/74 (29%), Positives = 43/74 (58%)

Query:    66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125
             T++ V N+++ T+ + +  +F + G +  + +  D+ +K   GF F  F+ + D EDA+ 
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   126 YISGTILDDRPIRV 139
              + G +LD R +RV
Sbjct:    74 AMDGAVLDGRELRV 87


>MGI|MGI:1099460 [details] [associations]
            symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
            evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
            [GO:0006950 "response to stress" evidence=IEA] [GO:0009409
            "response to cold" evidence=IDA] [GO:0015934 "large ribosomal
            subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
            [GO:0043023 "ribosomal large subunit binding" evidence=IPI]
            [GO:0045727 "positive regulation of translation" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
            HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
            GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
            EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
            RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
            ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
            PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
            PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
            Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
            NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
            GermOnline:ENSMUSG00000031167 Uniprot:O89086
        Length = 153

 Score = 122 (48.0 bits), Expect = 9.4e-08, P = 9.4e-08
 Identities = 25/73 (34%), Positives = 44/73 (60%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG ++F T E+ + + FS  G I ++++  D+ ++   GF F  F + E   DA++ +
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  LD R IRVD
Sbjct:    68 NGESLDGRQIRVD 80


>UNIPROTKB|G3V6P6 [details] [associations]
            symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
            subunit binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
            NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
            Uniprot:G3V6P6
        Length = 156

 Score = 122 (48.0 bits), Expect = 9.4e-08, P = 9.4e-08
 Identities = 25/73 (34%), Positives = 44/73 (60%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG ++F T E+ + + FS  G I ++++  D+ ++   GF F  F + E   DA++ +
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  LD R IRVD
Sbjct:    68 NGESLDGRQIRVD 80


>WB|WBGene00011156 [details] [associations]
            symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
            RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
            IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
            GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
            WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
            Uniprot:O45713
        Length = 85

 Score = 120 (47.3 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 25/78 (32%), Positives = 41/78 (52%)

Query:    63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTED 122
             ++  +VYVGN  F TTE+ +   FS+AG +  + +  D+ +  P GF F  F      + 
Sbjct:     1 MSGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQR 60

Query:   123 AVKYISGTILDDRPIRVD 140
             AV   +G   + R +RV+
Sbjct:    61 AVDQFNGVDFNGRALRVN 78


>WB|WBGene00013293 [details] [associations]
            symbol:Y57G11A.5 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z99279
            RefSeq:NP_502757.2 ProteinModelPortal:O18219 SMR:O18219
            EnsemblMetazoa:Y57G11A.5 GeneID:190364 KEGG:cel:CELE_Y57G11A.5
            UCSC:Y57G11A.5 CTD:190364 WormBase:Y57G11A.5 eggNOG:NOG301947
            HOGENOM:HOG000020379 InParanoid:O18219 OMA:KKICDLE Uniprot:O18219
        Length = 110

 Score = 120 (47.3 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 31/73 (42%), Positives = 40/73 (54%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             VYVGNM F  TE++I  +FS  G IK I M     +K P GF F  F       DAVKY+
Sbjct:    19 VYVGNMPFDATEKEIEAVFSVMGPIKSIWM-----AKRPPGFAFVTFKRTVHAFDAVKYL 73

Query:   128 SGTILDDRPIRVD 140
             +G  + D   +V+
Sbjct:    74 NGKKICDLEAKVE 86


>UNIPROTKB|O45713 [details] [associations]
            symbol:R09B3.3 "Protein R09B3.3" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
            SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
            EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
            UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
            OMA:KRVHIPT NextBio:878159 Uniprot:O45713
        Length = 85

 Score = 120 (47.3 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 25/78 (32%), Positives = 41/78 (52%)

Query:    63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTED 122
             ++  +VYVGN  F TTE+ +   FS+AG +  + +  D+ +  P GF F  F      + 
Sbjct:     1 MSGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQR 60

Query:   123 AVKYISGTILDDRPIRVD 140
             AV   +G   + R +RV+
Sbjct:    61 AVDQFNGVDFNGRALRVN 78


>UNIPROTKB|B4E2X2 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
            UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
            SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
            Uniprot:B4E2X2
        Length = 263

 Score = 135 (52.6 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>UNIPROTKB|D6W5Y5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
            UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
            HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
            PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
            Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
            Bgee:D6W5Y5 Uniprot:D6W5Y5
        Length = 297

 Score = 135 (52.6 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 25/73 (34%), Positives = 48/73 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    68 NGKSVDGRQIRVD 80


>RGD|620145 [details] [associations]
            symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
            evidence=ISO] [GO:0006417 "regulation of translation"
            evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
            [GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
            ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
            evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
            subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
            eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
            EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
            RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
            MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
            KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
            Genevestigator:Q925G0 Uniprot:Q925G0
        Length = 155

 Score = 118 (46.6 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 24/73 (32%), Positives = 43/73 (58%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG ++F T E+ + + FS  G I ++++  D+ ++   GF F  F + E   D ++ +
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  LD R IRVD
Sbjct:    68 NGESLDGRQIRVD 80


>WB|WBGene00011059 [details] [associations]
            symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
            EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
            SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
            GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
            WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
            Uniprot:O62337
        Length = 84

 Score = 118 (46.6 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 23/75 (30%), Positives = 41/75 (54%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +VYVGN+ +  TEE+I   F+  G +  + +  D+ +  P GF F  F      + AV+ 
Sbjct:     7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66

Query:   127 ISGTILDDRPIRVDF 141
             ++G   + R +RV++
Sbjct:    67 LNGVAFNGRNLRVNY 81


>UNIPROTKB|E1C875 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
            IPI:IPI00681985 ProteinModelPortal:E1C875
            Ensembl:ENSGALT00000031186 Uniprot:E1C875
        Length = 182

 Score = 126 (49.4 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 27/77 (35%), Positives = 46/77 (59%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             +T + V  +S YTTE  + E+FSR G +  + +  D+ +    GF F  F   +D+++A+
Sbjct:    17 NTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 76

Query:   125 KYISGTILDDRPIRVDF 141
             ++ +G  LD R IRVD+
Sbjct:    77 EHANGMELDGRRIRVDY 93


>UNIPROTKB|I3L5X7 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
            Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
            Uniprot:I3L5X7
        Length = 156

 Score = 117 (46.2 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 24/73 (32%), Positives = 44/73 (60%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG ++F T E+ + + FS  G I ++++  D+ ++   GF F  F + E   +A++ +
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  LD R IRVD
Sbjct:    68 NGESLDGRQIRVD 80


>TAIR|locus:2160752 [details] [associations]
            symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
            HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
            IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
            ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
            PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
            KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
            PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
            Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
        Length = 146

 Score = 117 (46.2 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 24/77 (31%), Positives = 46/77 (59%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             ++ +++G +SF TTE+ + E FS+ G++ +  + +D+ S    GF F  F S ++ + A+
Sbjct:    33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92

Query:   125 KYISGTILDDRPIRVDF 141
                +G  L+ R I VD+
Sbjct:    93 MEFNGQQLNGRTIFVDY 109


>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
            symbol:cirbp "cold inducible RNA binding protein"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
            to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
            EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
            Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
            Uniprot:F1R6L3
        Length = 224

 Score = 130 (50.8 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 27/73 (36%), Positives = 45/73 (61%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             +++G +S+ TTE+ + E FS+ G I K+ +  D+ +    GF F  F + ED +DA+  +
Sbjct:    25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    85 NGKQVDGRMIRVD 97


>UNIPROTKB|G4MR34 [details] [associations]
            symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
            subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
            ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
            GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
        Length = 305

 Score = 133 (51.9 bits), Expect = 4.6e-07, P = 4.6e-07
 Identities = 28/77 (36%), Positives = 46/77 (59%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             S  V+VGN+ +  +EEQI ++FSRAG++    +  D+ +  P GF FA +   +    AV
Sbjct:     7 SRVVFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAV 66

Query:   125 KYISGTILDDRPIRVDF 141
             + ++ T +  R +RVDF
Sbjct:    67 RNLNDTEIMGRKLRVDF 83


>MGI|MGI:2447622 [details] [associations]
            symbol:Rbm11 "RNA binding motif protein 11" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0030154 "cell differentiation"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:2447622 GO:GO:0007275
            GO:GO:0030154 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH466521
            HSSP:P33240 CTD:54033 eggNOG:NOG245318 HOGENOM:HOG000146448
            HOVERGEN:HBG061506 EMBL:AC166995 EMBL:BC050779 EMBL:AK039297
            IPI:IPI00133149 RefSeq:NP_938044.1 UniGene:Mm.273214
            ProteinModelPortal:Q80YT9 SMR:Q80YT9 Ensembl:ENSMUST00000046378
            Ensembl:ENSMUST00000114253 GeneID:224344 KEGG:mmu:224344
            UCSC:uc007zro.1 GeneTree:ENSGT00690000102191 NextBio:377164
            Bgee:Q80YT9 Genevestigator:Q80YT9 Uniprot:Q80YT9
        Length = 238

 Score = 130 (50.8 bits), Expect = 5.7e-07, P = 5.7e-07
 Identities = 30/81 (37%), Positives = 44/81 (54%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  TV+VGN+     EE +YELF +AG + K+ +  D++ K P  F F  F   E    A
Sbjct:     8 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGK-PKSFGFVCFKHPESVSYA 66

Query:   124 VKYISGTILDDRPIRVDFDWG 144
             +  ++G  L  RPI V + +G
Sbjct:    67 IALLNGIRLYGRPINVQYRFG 87


>RGD|1305195 [details] [associations]
            symbol:Rbm11 "RNA binding motif protein 11" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1305195 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            OMA:YRFGSSR OrthoDB:EOG4Q58Q1 GeneTree:ENSGT00690000102191
            IPI:IPI00363165 Ensembl:ENSRNOT00000047240 UCSC:RGD:1305195
            Uniprot:D3ZQ24
        Length = 238

 Score = 130 (50.8 bits), Expect = 5.7e-07, P = 5.7e-07
 Identities = 30/81 (37%), Positives = 44/81 (54%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  TV+VGN+     EE +YELF +AG + K+ +  D++ K P  F F  F   E    A
Sbjct:     8 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGK-PKSFGFVCFKHPESVSYA 66

Query:   124 VKYISGTILDDRPIRVDFDWG 144
             +  ++G  L  RPI V + +G
Sbjct:    67 IALLNGIRLYGRPINVQYRFG 87


>ZFIN|ZDB-GENE-040426-1094 [details] [associations]
            symbol:tra2b "transformer 2 beta homolog
            (Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1094
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q9V535
            HOVERGEN:HBG107480 KO:K12897 CTD:6434 EMBL:BC049051 IPI:IPI00493400
            RefSeq:NP_957491.1 UniGene:Dr.9221 ProteinModelPortal:Q7ZUG9
            SMR:Q7ZUG9 STRING:Q7ZUG9 PRIDE:Q7ZUG9 GeneID:394172 KEGG:dre:394172
            InParanoid:Q7ZUG9 NextBio:20815117 ArrayExpress:Q7ZUG9 Bgee:Q7ZUG9
            Uniprot:Q7ZUG9
        Length = 278

 Score = 131 (51.2 bits), Expect = 7.0e-07, P = 7.0e-07
 Identities = 27/72 (37%), Positives = 43/72 (59%)

Query:    70 VGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG 129
             V  +S YTTE  + E+FS+ G +  + +  D+ S+   GF    F +RED+++A +  +G
Sbjct:   127 VFGLSLYTTERDLREVFSKYGPLSDVCIVYDQQSRRSRGFALVYFENREDSKEAKERANG 186

Query:   130 TILDDRPIRVDF 141
               LD R IRVD+
Sbjct:   187 MELDGRRIRVDY 198


>UNIPROTKB|Q9DDU8 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
            EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
            UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
            GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
            Uniprot:Q9DDU8
        Length = 289

 Score = 131 (51.2 bits), Expect = 7.7e-07, P = 7.7e-07
 Identities = 29/72 (40%), Positives = 42/72 (58%)

Query:    70 VGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG 129
             V  +S YTTE  + E+FS+ G I  + +  D+ S+   GF F  F + ED ++A +  +G
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVEDAKEAKERANG 181

Query:   130 TILDDRPIRVDF 141
               LD R IRVDF
Sbjct:   182 MELDGRRIRVDF 193


>ZFIN|ZDB-GENE-050417-329 [details] [associations]
            symbol:zgc:112425 "zgc:112425" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
            OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
            EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
            UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
            Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
            KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
        Length = 185

 Score = 124 (48.7 bits), Expect = 8.5e-07, P = 8.5e-07
 Identities = 24/73 (32%), Positives = 45/73 (61%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             +++G +SF TTE+ + + FS+ G I  + +  ++ +    GF F  F + +D +DA++ +
Sbjct:     7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66

Query:   128 SGTILDDRPIRVD 140
             +G  +D R IRVD
Sbjct:    67 NGKSVDGRTIRVD 79


>TAIR|locus:2076096 [details] [associations]
            symbol:GRP4 "glycine-rich RNA-binding protein 4"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
            to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
            cell wall organization" evidence=RCA] [GO:0042545 "cell wall
            modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
            eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
            ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
            IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
            UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
            PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
            EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
            GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
            PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
        Length = 136

 Score = 97 (39.2 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
 Identities = 21/76 (27%), Positives = 41/76 (53%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             S+ ++VG +S+ T +  + + F+  GE+ +  +  D+ +    GF F  F   +   +A+
Sbjct:    34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93

Query:   125 KYISGTILDDRPIRVD 140
             K + G  L+ R IRV+
Sbjct:    94 KEMDGKELNGRQIRVN 109

 Score = 44 (20.5 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query:   187 VNISFHRTEA-FNSFGGGDAY 206
             VN++  R+ A  +SFGGG  Y
Sbjct:   108 VNLATERSSAPRSSFGGGGGY 128


>UNIPROTKB|B4DQI6 [details] [associations]
            symbol:TRA2A "cDNA FLJ50614, highly similar to
            Transformer-2 protein homolog" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
            UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
            EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
            Uniprot:B4DQI6
        Length = 180

 Score = 123 (48.4 bits), Expect = 9.3e-07, P = 9.3e-07
 Identities = 27/77 (35%), Positives = 45/77 (58%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             +T + V  +S YTTE  + E+FSR G +  + +  D+ +    GF F  F   +D+++A+
Sbjct:    17 NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 76

Query:   125 KYISGTILDDRPIRVDF 141
             +  +G  LD R IRVD+
Sbjct:    77 ERANGMELDGRRIRVDY 93


>UNIPROTKB|B4DUA9 [details] [associations]
            symbol:TRA2A "Transformer-2 protein homolog alpha"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
            EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
            SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
        Length = 181

 Score = 123 (48.4 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 27/77 (35%), Positives = 45/77 (58%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             +T + V  +S YTTE  + E+FSR G +  + +  D+ +    GF F  F   +D+++A+
Sbjct:    17 NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 76

Query:   125 KYISGTILDDRPIRVDF 141
             +  +G  LD R IRVD+
Sbjct:    77 ERANGMELDGRRIRVDY 93


>UNIPROTKB|F1N209 [details] [associations]
            symbol:RBM11 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:YRFGSSR
            GeneTree:ENSGT00690000102191 EMBL:DAAA02000527 IPI:IPI00911874
            RefSeq:XP_003581718.1 UniGene:Bt.104085 Ensembl:ENSBTAT00000048660
            GeneID:100850231 KEGG:bta:100850231 NextBio:20926533 Uniprot:F1N209
        Length = 246

 Score = 128 (50.1 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 30/81 (37%), Positives = 43/81 (53%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  TV+VGN+     EE +YELF +AG + K+ +  D+  K P  F F  F   E    A
Sbjct:     8 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGK-PKSFGFVCFKHPESVSYA 66

Query:   124 VKYISGTILDDRPIRVDFDWG 144
             +  ++G  L  RPI V + +G
Sbjct:    67 IALLNGIRLYGRPINVQYRFG 87


>WB|WBGene00004701 [details] [associations]
            symbol:rsp-4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0002009
            "morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
            morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
            evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0042127 "regulation of cell proliferation" evidence=IMP]
            [GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
            "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
            GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
            GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
            GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
            RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
            ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
            MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
            EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
            UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
            eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
            InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
            Uniprot:Q09511
        Length = 196

 Score = 124 (48.7 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query:    66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125
             T++ + N+S+ TT   +   F R G+I  + +  DK S+   GF F  FY R D E A+ 
Sbjct:    19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78

Query:   126 YISGTILDDRPIRV 139
                G ++D R +RV
Sbjct:    79 RTDGKLVDGRELRV 92


>UNIPROTKB|Q09511 [details] [associations]
            symbol:rsp-4 "Probable splicing factor,
            arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
            [GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
            GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
            GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
            RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
            ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
            MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
            EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
            UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
            eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
            InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
            Uniprot:Q09511
        Length = 196

 Score = 124 (48.7 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query:    66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125
             T++ + N+S+ TT   +   F R G+I  + +  DK S+   GF F  FY R D E A+ 
Sbjct:    19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78

Query:   126 YISGTILDDRPIRV 139
                G ++D R +RV
Sbjct:    79 RTDGKLVDGRELRV 92


>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
            symbol:srsf2b "serine/arginine-rich splicing
            factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
            HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
            HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
            IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
            Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
            InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
        Length = 220

 Score = 126 (49.4 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 24/74 (32%), Positives = 43/74 (58%)

Query:    66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125
             T++ V N+++ T+ E +  +F + G +  + +  D+ +K   GF F  F+ + D EDA+ 
Sbjct:    14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   126 YISGTILDDRPIRV 139
              + G ILD R +RV
Sbjct:    74 AMDGAILDGRELRV 87


>CGD|CAL0003946 [details] [associations]
            symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
            RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
            KEGG:cal:CaO19.1389 Uniprot:Q59YD7
        Length = 163

 Score = 117 (46.2 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 29/95 (30%), Positives = 48/95 (50%)

Query:    50 RFPGTQEEFEEAL-----LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSK 104
             R   T+EE +E L     +   +VYVGN+ + +T EQ+ E F   G I+++ +  D+ S 
Sbjct:     7 RVQETEEERQERLAKQEEIDGRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSG 66

Query:   105 TPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139
              P G+ +  F   E  + A+  + G     R +RV
Sbjct:    67 LPKGYAYIEFEQTESVQKAIDELHGKEFRGRELRV 101


>UNIPROTKB|I3LBN9 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
            GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
            Uniprot:I3LBN9
        Length = 280

 Score = 128 (50.1 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query:    70 VGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG 129
             V  +S YTTE  + E+FS+ G I  + +  D+ S+   GF F  F + +D ++A +  +G
Sbjct:   114 VFGLSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 173

Query:   130 TILDDRPIRVDF 141
               LD R IRVDF
Sbjct:   174 MELDGRRIRVDF 185


>UNIPROTKB|P57052 [details] [associations]
            symbol:RBM11 "Splicing regulator RBM11" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0007275 "multicellular organismal development"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0030154
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AP001660 EMBL:AK091331
            EMBL:BC030196 EMBL:AY077695 EMBL:AF519623 IPI:IPI00025663
            IPI:IPI00855847 RefSeq:NP_658983.3 UniGene:Hs.283828 PDB:2YWK
            PDBsum:2YWK ProteinModelPortal:P57052 SMR:P57052 IntAct:P57052
            MINT:MINT-1452231 DMDM:9978670 PRIDE:P57052 DNASU:54033
            Ensembl:ENST00000400577 GeneID:54033 KEGG:hsa:54033 UCSC:uc002yjn.4
            CTD:54033 GeneCards:GC21P015588 HGNC:HGNC:9897 HPA:HPA045885
            neXtProt:NX_P57052 PharmGKB:PA34260 eggNOG:NOG245318
            HOGENOM:HOG000146448 HOVERGEN:HBG061506 InParanoid:P57052
            OMA:YRFGSSR OrthoDB:EOG4Q58Q1 PhylomeDB:P57052
            EvolutionaryTrace:P57052 GenomeRNAi:54033 NextBio:56316
            ArrayExpress:P57052 Bgee:P57052 CleanEx:HS_RBM11
            Genevestigator:P57052 GermOnline:ENSG00000185272 Uniprot:P57052
        Length = 281

 Score = 128 (50.1 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 30/81 (37%), Positives = 43/81 (53%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  TV+VGN+     EE +YELF +AG + K+ +  D+  K P  F F  F   E    A
Sbjct:     8 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGK-PKSFGFVCFKHPESVSYA 66

Query:   124 VKYISGTILDDRPIRVDFDWG 144
             +  ++G  L  RPI V + +G
Sbjct:    67 IALLNGIRLYGRPINVQYRFG 87


>UNIPROTKB|Q3ZBT6 [details] [associations]
            symbol:TRA2B "Transformer-2 protein homolog beta"
            species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
            OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
            RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
            SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
            GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
            HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
            Uniprot:Q3ZBT6
        Length = 288

 Score = 128 (50.1 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query:    70 VGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG 129
             V  +S YTTE  + E+FS+ G I  + +  D+ S+   GF F  F + +D ++A +  +G
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query:   130 TILDDRPIRVDF 141
               LD R IRVDF
Sbjct:   182 MELDGRRIRVDF 193


>UNIPROTKB|E2RD37 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
            ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
            NextBio:20853966 Uniprot:E2RD37
        Length = 288

 Score = 128 (50.1 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query:    70 VGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG 129
             V  +S YTTE  + E+FS+ G I  + +  D+ S+   GF F  F + +D ++A +  +G
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query:   130 TILDDRPIRVDF 141
               LD R IRVDF
Sbjct:   182 MELDGRRIRVDF 193


>UNIPROTKB|P62995 [details] [associations]
            symbol:TRA2B "Transformer-2 protein homolog beta"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
            transesterification reactions" evidence=TAS] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
            "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
            GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
            OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
            EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
            IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
            RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
            PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
            PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
            IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
            DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
            Ensembl:ENST00000342294 Ensembl:ENST00000382191
            Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
            KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
            H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
            neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
            PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
            GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
            Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
        Length = 288

 Score = 128 (50.1 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query:    70 VGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG 129
             V  +S YTTE  + E+FS+ G I  + +  D+ S+   GF F  F + +D ++A +  +G
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query:   130 TILDDRPIRVDF 141
               LD R IRVDF
Sbjct:   182 MELDGRRIRVDF 193


>MGI|MGI:106016 [details] [associations]
            symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
            "mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
            OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
            EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
            RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
            UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
            STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
            Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
            KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
            Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
            Uniprot:P62996
        Length = 288

 Score = 128 (50.1 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query:    70 VGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG 129
             V  +S YTTE  + E+FS+ G I  + +  D+ S+   GF F  F + +D ++A +  +G
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query:   130 TILDDRPIRVDF 141
               LD R IRVDF
Sbjct:   182 MELDGRRIRVDF 193


>RGD|619886 [details] [associations]
            symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000302 "response to reactive oxygen species"
            evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
            GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
            KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
            HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
            RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
            SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
            PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
            KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
            Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
        Length = 288

 Score = 128 (50.1 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query:    70 VGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG 129
             V  +S YTTE  + E+FS+ G I  + +  D+ S+   GF F  F + +D ++A +  +G
Sbjct:   122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181

Query:   130 TILDDRPIRVDF 141
               LD R IRVDF
Sbjct:   182 MELDGRRIRVDF 193


>UNIPROTKB|K7ELT6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
            Uniprot:K7ELT6
        Length = 135

 Score = 111 (44.1 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 19/64 (29%), Positives = 42/64 (65%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SGTI 131
             +G +
Sbjct:    68 NGKV 71


>UNIPROTKB|I3LLT9 [details] [associations]
            symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
            GeneTree:ENSGT00600000084414 EMBL:CU915556
            Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
        Length = 94

 Score = 111 (44.1 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 22/76 (28%), Positives = 42/76 (55%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             + +TVYV N+ F  T   +Y +FS+ G++ K+ +  DK+++   G  F LF  ++  ++ 
Sbjct:     8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 67

Query:   124 VKYISGTILD-DRPIR 138
              + I+   +    PIR
Sbjct:    68 TRAINNKQVSLSFPIR 83


>UNIPROTKB|E2R771 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
            Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
            Uniprot:E2R771
        Length = 162

 Score = 116 (45.9 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 24/73 (32%), Positives = 42/73 (57%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG ++F T E+ + + F   G I ++++  D+ ++   GF F  F   E   DA++ +
Sbjct:     8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  LD R IRVD
Sbjct:    68 NGESLDGRQIRVD 80


>UNIPROTKB|F5GY08 [details] [associations]
            symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
            EMBL:AP002373 IPI:IPI01012450 ProteinModelPortal:F5GY08 SMR:F5GY08
            Ensembl:ENST00000544582 ArrayExpress:F5GY08 Bgee:F5GY08
            Uniprot:F5GY08
        Length = 220

 Score = 125 (49.1 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 38/135 (28%), Positives = 58/135 (42%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  T++VGN+    TEE ++ELF +AG + K+ +  DK+ K P  F F  F        A
Sbjct:     8 ADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGK-PKQFAFVNFKHEVSVPYA 66

Query:   124 VKYISGTILDDRPIRVDFDWGFXXXXXXXXXXX-XXXVRDEYRTDYDPDILLLTLLNFMC 182
             +  ++G  L  RPI++ F  G                V +   T   P     T+ N   
Sbjct:    67 MNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERTMDNMTS 126

Query:   183 WSDVVNISFHRTEAF 197
              + ++  SF   E F
Sbjct:   127 SAQIIQRSFSSPENF 141


>UNIPROTKB|J9PA68 [details] [associations]
            symbol:RBM11 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:54033
            OMA:YRFGSSR GeneTree:ENSGT00690000102191 EMBL:AAEX03016434
            RefSeq:XP_535558.1 ProteinModelPortal:J9PA68
            Ensembl:ENSCAFT00000043040 GeneID:478383 KEGG:cfa:478383
            Uniprot:J9PA68
        Length = 238

 Score = 126 (49.4 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 30/81 (37%), Positives = 43/81 (53%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  TV+VGN+     EE +YELF +AG + K+ +  D+  K P  F F  F   E    A
Sbjct:     8 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGK-PKTFGFVCFKHPESVSYA 66

Query:   124 VKYISGTILDDRPIRVDFDWG 144
             +  ++G  L  RPI V + +G
Sbjct:    67 IALLNGIRLYGRPINVQYRFG 87


>SGD|S000005846 [details] [associations]
            symbol:HSH49 "U2-snRNP associated splicing factor"
            species:4932 "Saccharomyces cerevisiae" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=IDA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IMP;IPI] [GO:0071004 "U2-type
            prespliceosome" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            SGD:S000005846 EMBL:BK006948 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0000398 GO:GO:0005686 GO:GO:0071004 EMBL:X90565
            GeneTree:ENSGT00690000101901 EMBL:Z75227 EMBL:AY558437 PIR:S58329
            RefSeq:NP_014964.1 ProteinModelPortal:Q99181 SMR:Q99181
            DIP:DIP-930N IntAct:Q99181 MINT:MINT-391267 STRING:Q99181
            PaxDb:Q99181 PeptideAtlas:Q99181 EnsemblFungi:YOR319W GeneID:854497
            KEGG:sce:YOR319W CYGD:YOR319w eggNOG:NOG282907 HOGENOM:HOG000200535
            KO:K12831 OMA:QEATVYL OrthoDB:EOG4Q886Z NextBio:976831
            Genevestigator:Q99181 GermOnline:YOR319W Uniprot:Q99181
        Length = 213

 Score = 124 (48.7 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 29/77 (37%), Positives = 46/77 (59%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             +  TVYVGN+    T+EQ+YELF +   + +I    DK  +   G+ F  FY++ D + A
Sbjct:     7 SGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYA 66

Query:   124 VKYISGTI-LDDRPIRV 139
             +K ++ T+ L DR I+V
Sbjct:    67 IKIMNNTVRLYDRLIKV 83


>ASPGD|ASPL0000076731 [details] [associations]
            symbol:AN4865 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
            KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
            ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
            EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
            HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
        Length = 524

 Score = 131 (51.2 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 26/77 (33%), Positives = 42/77 (54%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             S T++VGN+ F   E+ ++E+F   G +  I +  D  S  P GF +  + S ++   A 
Sbjct:   383 SDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAY 442

Query:   125 KYISGTILDDRPIRVDF 141
               + G  +D RPIR+DF
Sbjct:   443 NELQGAEIDGRPIRLDF 459


>UNIPROTKB|F6RBQ9 [details] [associations]
            symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
            OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
            Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
        Length = 160

 Score = 115 (45.5 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 24/73 (32%), Positives = 43/73 (58%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG ++F T E  + + FS  G I ++++  D+ ++   GF F  F + E   +A++ +
Sbjct:     8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  LD R IRVD
Sbjct:    68 NGESLDGRQIRVD 80


>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
            symbol:srsf2a "serine/arginine-rich splicing
            factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
            HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
            HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
            EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
            UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
            Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
            InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
        Length = 225

 Score = 124 (48.7 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 23/74 (31%), Positives = 43/74 (58%)

Query:    66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125
             T++ V N+++ T+ E +  +F + G +  + +  D+ +K   GF F  F+ + D EDA+ 
Sbjct:    14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   126 YISGTILDDRPIRV 139
              + G +LD R +RV
Sbjct:    74 AMDGALLDGRELRV 87


>UNIPROTKB|F1NPM7 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
            OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
            Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
        Length = 277

 Score = 126 (49.4 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 27/77 (35%), Positives = 46/77 (59%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             +T + V  +S YTTE  + E+FSR G +  + +  D+ +    GF F  F   +D+++A+
Sbjct:   120 NTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 179

Query:   125 KYISGTILDDRPIRVDF 141
             ++ +G  LD R IRVD+
Sbjct:   180 EHANGMELDGRRIRVDY 196


>UNIPROTKB|F1NYA2 [details] [associations]
            symbol:LOC100859865 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00530000063406 EMBL:AADN02026007 IPI:IPI00581340
            ProteinModelPortal:F1NYA2 Ensembl:ENSGALT00000001999 Uniprot:F1NYA2
        Length = 146

 Score = 109 (43.4 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 28/92 (30%), Positives = 46/92 (50%)

Query:    53 GTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFA 112
             G++++ E       T YVGN+ F T +  I  +F     ++ + +  DK +    GFC+ 
Sbjct:    27 GSRKQKELPTEPPFTAYVGNLPFNTVQGDIDAIFKDLS-VRSVRLVRDKETDKFKGFCYV 85

Query:   113 LFYSREDTEDAVKYISGTILDDRPIRVDFDWG 144
              F   E  ++A+ Y  G +L DR +RVD   G
Sbjct:    86 EFDEVESLKEALTY-DGALLGDRSLRVDIAEG 116


>UNIPROTKB|K7ELV6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
        Length = 70

 Score = 109 (43.4 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 19/62 (30%), Positives = 41/62 (66%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +SF T E+ + ++FS+ G+I ++++  D+ ++   GF F  F + +D +DA+  +
Sbjct:     8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query:   128 SG 129
             +G
Sbjct:    68 NG 69


>UNIPROTKB|Q83CD7 [details] [associations]
            symbol:CBU_1183 "Glycine-rich RNA-binding protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 109 (43.4 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 21/78 (26%), Positives = 45/78 (57%)

Query:    63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTED 122
             ++   +YVG++S+  T +++   F + GEI++  + +D+ +    GF F  + +++  ++
Sbjct:    15 MSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74

Query:   123 AVKYISGTILDDRPIRVD 140
             AV   +G  L  R IRV+
Sbjct:    75 AVSKANGIDLQGRKIRVN 92


>TIGR_CMR|CBU_1183 [details] [associations]
            symbol:CBU_1183 "nucleic acid binding domain protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 109 (43.4 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 21/78 (26%), Positives = 45/78 (57%)

Query:    63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTED 122
             ++   +YVG++S+  T +++   F + GEI++  + +D+ +    GF F  + +++  ++
Sbjct:    15 MSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74

Query:   123 AVKYISGTILDDRPIRVD 140
             AV   +G  L  R IRV+
Sbjct:    75 AVSKANGIDLQGRKIRVN 92


>UNIPROTKB|P98179 [details] [associations]
            symbol:RBM3 "Putative RNA-binding protein 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
            "dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
            evidence=ISS] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
            "large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
            GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
            RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
            SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
            PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
            PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
            Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
            CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
            MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
            KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
            NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
            Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
        Length = 157

 Score = 113 (44.8 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 24/73 (32%), Positives = 43/73 (58%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG ++F T E+ + + FS  G I ++++  D+ ++   GF F  F + E    A++ +
Sbjct:     8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67

Query:   128 SGTILDDRPIRVD 140
             +G  LD R IRVD
Sbjct:    68 NGESLDGRQIRVD 80


>TAIR|locus:2205293 [details] [associations]
            symbol:AT1G66260 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 KO:K12881 HSSP:O08583
            HOGENOM:HOG000239962 ProtClustDB:CLSN2689042 EMBL:AF410310
            EMBL:AY149925 IPI:IPI00520633 RefSeq:NP_001185329.1
            RefSeq:NP_564871.1 UniGene:At.25606 ProteinModelPortal:Q94EH8
            SMR:Q94EH8 STRING:Q94EH8 PaxDb:Q94EH8 PRIDE:Q94EH8
            EnsemblPlants:AT1G66260.1 EnsemblPlants:AT1G66260.2 GeneID:842943
            KEGG:ath:AT1G66260 TAIR:At1g66260 eggNOG:NOG257473
            InParanoid:Q94EH8 OMA:HAEAMNI PhylomeDB:Q94EH8
            Genevestigator:Q94EH8 Uniprot:Q94EH8
        Length = 295

 Score = 126 (49.4 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 33/106 (31%), Positives = 53/106 (50%)

Query:    45 AYRDRRFPGTQEE--FEEALLA--------STTVYVGNMSFYTTEEQIYELFSRAGEIKK 94
             A R R  P   +   +EE L A         TTVY+ N+    T E I EL++  GE+K+
Sbjct:    76 ARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGVTNEDIRELYAEIGELKR 135

Query:    95 IIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140
               +  DKN + P G    ++  R D   A++  +  +LD RP++++
Sbjct:   136 YAIHYDKNGR-PSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMKLE 180


>UNIPROTKB|Q9Y580 [details] [associations]
            symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0007126 EMBL:CH471065 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 CTD:10179 eggNOG:NOG273605
            HOGENOM:HOG000059553 HOVERGEN:HBG009324 KO:K13188 OrthoDB:EOG4W0XDN
            EMBL:AF156098 EMBL:AK002015 EMBL:AK312619 EMBL:BC034381
            IPI:IPI00001134 RefSeq:NP_057174.1 UniGene:Hs.7527
            ProteinModelPortal:Q9Y580 SMR:Q9Y580 DIP:DIP-48833N IntAct:Q9Y580
            MINT:MINT-1453692 STRING:Q9Y580 PhosphoSite:Q9Y580 DMDM:9978697
            PRIDE:Q9Y580 DNASU:10179 Ensembl:ENST00000540163 GeneID:10179
            KEGG:hsa:10179 UCSC:uc001pov.3 GeneCards:GC11P114305 HGNC:HGNC:9904
            HPA:HPA013993 MIM:612413 neXtProt:NX_Q9Y580 PharmGKB:PA34269
            PhylomeDB:Q9Y580 GenomeRNAi:10179 NextBio:38534 ArrayExpress:Q9Y580
            Bgee:Q9Y580 CleanEx:HS_RBM7 Genevestigator:Q9Y580
            GermOnline:ENSG00000076053 Uniprot:Q9Y580
        Length = 266

 Score = 125 (49.1 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 38/135 (28%), Positives = 58/135 (42%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  T++VGN+    TEE ++ELF +AG + K+ +  DK+ K P  F F  F        A
Sbjct:     8 ADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGK-PKQFAFVNFKHEVSVPYA 66

Query:   124 VKYISGTILDDRPIRVDFDWGFXXXXXXXXXXX-XXXVRDEYRTDYDPDILLLTLLNFMC 182
             +  ++G  L  RPI++ F  G                V +   T   P     T+ N   
Sbjct:    67 MNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERTMDNMTS 126

Query:   183 WSDVVNISFHRTEAF 197
              + ++  SF   E F
Sbjct:   127 SAQIIQRSFSSPENF 141


>UNIPROTKB|B4DN89 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
            ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
            ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
            Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
            Bgee:B4DN89 Uniprot:B4DN89
        Length = 209

 Score = 122 (48.0 bits), Expect = 4.0e-06, P = 4.0e-06
 Identities = 22/74 (29%), Positives = 43/74 (58%)

Query:    66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125
             T++ V N+++ T+ + +  +F + G +  + +  D+ +K   GF F  F+ + D EDA+ 
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   126 YISGTILDDRPIRV 139
              + G +LD R +RV
Sbjct:    74 AMDGAVLDGRELRV 87


>UNIPROTKB|K7GNR2 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
        Length = 129

 Score = 108 (43.1 bits), Expect = 4.4e-06, P = 4.4e-06
 Identities = 20/73 (27%), Positives = 42/73 (57%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             +++G ++  T E+ +  +F + G I ++++  D+ +    GF F  F S  D +DA + +
Sbjct:    10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69

Query:   128 SGTILDDRPIRVD 140
             +G  LD + I+V+
Sbjct:    70 NGKSLDGKAIKVE 82


>UNIPROTKB|E2QWQ0 [details] [associations]
            symbol:RBM7 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000102191 CTD:10179 KO:K13188 OMA:DRHYSRE
            EMBL:AAEX03003476 EMBL:AAEX03003477 RefSeq:XP_853905.2
            Ensembl:ENSCAFT00000021445 GeneID:611169 KEGG:cfa:611169
            Uniprot:E2QWQ0
        Length = 262

 Score = 124 (48.7 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 29/81 (35%), Positives = 44/81 (54%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  T++VGN+    TEE ++ELF +AG + K+ +  DK+ K P  F F  F        A
Sbjct:     8 ADRTLFVGNLETKVTEELLFELFHQAGPVVKVKIPKDKDGK-PKQFAFVNFKHEVSVPYA 66

Query:   124 VKYISGTILDDRPIRVDFDWG 144
             +  ++G  L  RPI++ F  G
Sbjct:    67 MNLLNGIKLFGRPIKIQFRSG 87


>UNIPROTKB|P30352 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
            EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
            UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
            GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
        Length = 221

 Score = 122 (48.0 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 22/74 (29%), Positives = 43/74 (58%)

Query:    66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125
             T++ V N+++ T+ + +  +F + G +  + +  D+ +K   GF F  F+ + D EDA+ 
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   126 YISGTILDDRPIRV 139
              + G +LD R +RV
Sbjct:    74 AMDGAVLDGRELRV 87


>UNIPROTKB|Q3MHR5 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
            IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
            ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
            Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
            InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
            Uniprot:Q3MHR5
        Length = 221

 Score = 122 (48.0 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 22/74 (29%), Positives = 43/74 (58%)

Query:    66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125
             T++ V N+++ T+ + +  +F + G +  + +  D+ +K   GF F  F+ + D EDA+ 
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   126 YISGTILDDRPIRV 139
              + G +LD R +RV
Sbjct:    74 AMDGAVLDGRELRV 87


>UNIPROTKB|E2RDB2 [details] [associations]
            symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
            GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
            EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
            ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
            GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
        Length = 221

 Score = 122 (48.0 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 22/74 (29%), Positives = 43/74 (58%)

Query:    66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125
             T++ V N+++ T+ + +  +F + G +  + +  D+ +K   GF F  F+ + D EDA+ 
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   126 YISGTILDDRPIRV 139
              + G +LD R +RV
Sbjct:    74 AMDGAVLDGRELRV 87


>UNIPROTKB|Q01130 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
            "transcription corepressor activity" evidence=NAS] [GO:0016607
            "nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
            from RNA polymerase II promoter" evidence=TAS] [GO:0006369
            "termination of RNA polymerase II transcription" evidence=TAS]
            [GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
            "RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
            Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
            GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
            GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
            HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
            CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
            EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
            EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
            RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
            PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
            ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
            MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
            PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
            Ensembl:ENST00000359995 Ensembl:ENST00000392485
            Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
            KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
            MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
            ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
            NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
            Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
        Length = 221

 Score = 122 (48.0 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 22/74 (29%), Positives = 43/74 (58%)

Query:    66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125
             T++ V N+++ T+ + +  +F + G +  + +  D+ +K   GF F  F+ + D EDA+ 
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   126 YISGTILDDRPIRV 139
              + G +LD R +RV
Sbjct:    74 AMDGAVLDGRELRV 87


>UNIPROTKB|Q06A98 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
            RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
            SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
        Length = 221

 Score = 122 (48.0 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 22/74 (29%), Positives = 43/74 (58%)

Query:    66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125
             T++ V N+++ T+ + +  +F + G +  + +  D+ +K   GF F  F+ + D EDA+ 
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   126 YISGTILDDRPIRV 139
              + G +LD R +RV
Sbjct:    74 AMDGAVLDGRELRV 87


>MGI|MGI:98284 [details] [associations]
            symbol:Srsf2 "serine/arginine-rich splicing factor 2"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
            HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
            OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
            EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
            IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
            UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
            DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
            PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
            Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
            NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
            GermOnline:ENSMUSG00000034120 Uniprot:Q62093
        Length = 221

 Score = 122 (48.0 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 22/74 (29%), Positives = 43/74 (58%)

Query:    66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125
             T++ V N+++ T+ + +  +F + G +  + +  D+ +K   GF F  F+ + D EDA+ 
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   126 YISGTILDDRPIRV 139
              + G +LD R +RV
Sbjct:    74 AMDGAVLDGRELRV 87


>RGD|1359422 [details] [associations]
            symbol:Srsf2 "serine/arginine-rich splicing factor 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
            eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
            OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
            RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
            SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
            Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
            NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
            Uniprot:Q6PDU1
        Length = 221

 Score = 122 (48.0 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 22/74 (29%), Positives = 43/74 (58%)

Query:    66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125
             T++ V N+++ T+ + +  +F + G +  + +  D+ +K   GF F  F+ + D EDA+ 
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   126 YISGTILDDRPIRV 139
              + G +LD R +RV
Sbjct:    74 AMDGAVLDGRELRV 87


>UNIPROTKB|Q6PDU1 [details] [associations]
            symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
            EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
            UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
            STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
            Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
            NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
            Uniprot:Q6PDU1
        Length = 221

 Score = 122 (48.0 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 22/74 (29%), Positives = 43/74 (58%)

Query:    66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125
             T++ V N+++ T+ + +  +F + G +  + +  D+ +K   GF F  F+ + D EDA+ 
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   126 YISGTILDDRPIRV 139
              + G +LD R +RV
Sbjct:    74 AMDGAVLDGRELRV 87


>TAIR|locus:2119505 [details] [associations]
            symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
            UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
            ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
            EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
            TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
            Genevestigator:Q6ID29 Uniprot:Q6ID29
        Length = 87

 Score = 107 (42.7 bits), Expect = 5.7e-06, P = 5.7e-06
 Identities = 26/75 (34%), Positives = 40/75 (53%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             +T VYVGN+S  TT++ + E FS  G +   I+  D+ +    GF F  + S  + E AV
Sbjct:     2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61

Query:   125 KYISGTILDDRPIRV 139
               + G  L+ R + V
Sbjct:    62 SGMDGKELNGRRVSV 76


>TAIR|locus:2177033 [details] [associations]
            symbol:AT5G12190 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 EMBL:AB007727 HOGENOM:HOG000276232 EMBL:BT002829
            EMBL:BT004430 EMBL:AY088716 IPI:IPI00520700 RefSeq:NP_196780.1
            UniGene:At.32166 ProteinModelPortal:Q9FMP4 SMR:Q9FMP4 IntAct:Q9FMP4
            STRING:Q9FMP4 PaxDb:Q9FMP4 PRIDE:Q9FMP4 EnsemblPlants:AT5G12190.1
            GeneID:831092 KEGG:ath:AT5G12190 TAIR:At5g12190 InParanoid:Q9FMP4
            KO:K12833 OMA:YQSTKAF PhylomeDB:Q9FMP4 ProtClustDB:CLSN2686825
            Genevestigator:Q9FMP4 GermOnline:AT5G12190 Uniprot:Q9FMP4
        Length = 124

 Score = 107 (42.7 bits), Expect = 5.7e-06, P = 5.7e-06
 Identities = 22/62 (35%), Positives = 39/62 (62%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             +YV N+ F  T E++Y++F + G I++I +G DK +K   G  F ++    D ++AV ++
Sbjct:    21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATK---GTAFVVYEDIYDAKNAVDHL 77

Query:   128 SG 129
             SG
Sbjct:    78 SG 79


>POMBASE|SPBC3B9.11c [details] [associations]
            symbol:ctf1 "mRNA cleavage and polyadenylation
            specificity factor complex subunit Ctf1" species:4896
            "Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
            specificity factor complex" evidence=IDA] [GO:0006378 "mRNA
            polyadenylation" evidence=IC] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC3B9.11c
            GO:GO:0005829 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
            GO:GO:0006378 GenomeReviews:CU329671_GR GO:GO:0003723
            eggNOG:COG0724 GO:GO:0005847 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 PIR:T40350 RefSeq:NP_596669.1
            ProteinModelPortal:O43040 STRING:O43040 EnsemblFungi:SPBC3B9.11c.1
            GeneID:2541018 KEGG:spo:SPBC3B9.11c OMA:QLAYAIF OrthoDB:EOG4GQTF6
            NextBio:20802132 Uniprot:O43040
        Length = 363

 Score = 126 (49.4 bits), Expect = 5.9e-06, P = 5.9e-06
 Identities = 26/81 (32%), Positives = 48/81 (59%)

Query:    61 ALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDT 120
             ++ A   V+VGN+ +  +E+Q+ E+F++ G +K   + LD  + +  G+ F  F+  E T
Sbjct:     2 SMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETT 61

Query:   121 EDAVKYISGTILDDRPIRVDF 141
               AV+ ++ + L  R IRV+F
Sbjct:    62 AMAVRKLNNSELGPRKIRVEF 82


>UNIPROTKB|Q3MHY8 [details] [associations]
            symbol:RBM7 "RNA-binding protein 7" species:9913 "Bos
            taurus" [GO:0007126 "meiosis" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0007126 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
            EMBL:BC104518 IPI:IPI00690650 RefSeq:NP_001029659.1
            UniGene:Bt.56272 ProteinModelPortal:Q3MHY8 SMR:Q3MHY8 PRIDE:Q3MHY8
            Ensembl:ENSBTAT00000010804 GeneID:515307 KEGG:bta:515307 CTD:10179
            eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
            InParanoid:Q3MHY8 KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN
            NextBio:20871760 Uniprot:Q3MHY8
        Length = 262

 Score = 123 (48.4 bits), Expect = 6.8e-06, P = 6.8e-06
 Identities = 29/81 (35%), Positives = 44/81 (54%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  T++VGN+    TEE ++ELF +AG + K+ +  DK+ K P  F F  F        A
Sbjct:     8 ADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGK-PKQFAFVNFKHEVSVPYA 66

Query:   124 VKYISGTILDDRPIRVDFDWG 144
             +  ++G  L  RPI++ F  G
Sbjct:    67 MNLLNGIKLFGRPIKIQFRAG 87


>UNIPROTKB|F1SJV7 [details] [associations]
            symbol:LOC100522453 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000102191 KO:K13188 OMA:DRHYSRE EMBL:CU856090
            RefSeq:XP_003129925.1 Ensembl:ENSSSCT00000032163 GeneID:100522453
            KEGG:ssc:100522453 Uniprot:F1SJV7
        Length = 265

 Score = 123 (48.4 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 29/81 (35%), Positives = 44/81 (54%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  T++VGN+    TEE ++ELF +AG + K+ +  DK+ K P  F F  F        A
Sbjct:     8 ADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGK-PKQFAFVNFKHEVSVPYA 66

Query:   124 VKYISGTILDDRPIRVDFDWG 144
             +  ++G  L  RPI++ F  G
Sbjct:    67 MNLLNGIKLFGRPIKIQFRSG 87


>UNIPROTKB|J3KPD3 [details] [associations]
            symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CH471065 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            OMA:DRHYSRE UniGene:Hs.7527 HGNC:HGNC:9904 EMBL:AP002373
            ProteinModelPortal:J3KPD3 Ensembl:ENST00000375490 Uniprot:J3KPD3
        Length = 267

 Score = 123 (48.4 bits), Expect = 7.2e-06, P = 7.2e-06
 Identities = 29/81 (35%), Positives = 44/81 (54%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  T++VGN+    TEE ++ELF +AG + K+ +  DK+ K P  F F  F        A
Sbjct:     8 ADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGK-PKQFAFVNFKHEVSVPYA 66

Query:   124 VKYISGTILDDRPIRVDFDWG 144
             +  ++G  L  RPI++ F  G
Sbjct:    67 MNLLNGIKLYGRPIKIQFRSG 87


>ASPGD|ASPL0000040642 [details] [associations]
            symbol:AN2989 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
            GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
            ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
            Uniprot:C8VIY5
        Length = 128

 Score = 106 (42.4 bits), Expect = 7.5e-06, P = 7.5e-06
 Identities = 22/73 (30%), Positives = 44/73 (60%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             +++G ++++TT++ + E FSR G I++ ++  D+++    GF F  F S  + + A+  +
Sbjct:     4 LFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAM 63

Query:   128 SGTILDDRPIRVD 140
             +    D R IRVD
Sbjct:    64 NNQEFDGRIIRVD 76


>UNIPROTKB|E2R4B2 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
            Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
        Length = 278

 Score = 123 (48.4 bits), Expect = 7.9e-06, P = 7.9e-06
 Identities = 27/77 (35%), Positives = 45/77 (58%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             +T + V  +S YTTE  + E+FSR G +  + +  D+ +    GF F  F   +D+++A+
Sbjct:   118 NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 177

Query:   125 KYISGTILDDRPIRVDF 141
             +  +G  LD R IRVD+
Sbjct:   178 ERANGMELDGRRIRVDY 194


>UNIPROTKB|Q06AA6 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
            HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
            EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
            SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
            Uniprot:Q06AA6
        Length = 279

 Score = 123 (48.4 bits), Expect = 8.0e-06, P = 8.0e-06
 Identities = 27/77 (35%), Positives = 45/77 (58%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             +T + V  +S YTTE  + E+FSR G +  + +  D+ +    GF F  F   +D+++A+
Sbjct:   118 NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 177

Query:   125 KYISGTILDDRPIRVDF 141
             +  +G  LD R IRVD+
Sbjct:   178 ERANGMELDGRRIRVDY 194


>UNIPROTKB|Q2KJ71 [details] [associations]
            symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
            OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
            IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
            STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
            KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
        Length = 281

 Score = 123 (48.4 bits), Expect = 8.2e-06, P = 8.2e-06
 Identities = 27/77 (35%), Positives = 45/77 (58%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             +T + V  +S YTTE  + E+FSR G +  + +  D+ +    GF F  F   +D+++A+
Sbjct:   118 NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 177

Query:   125 KYISGTILDDRPIRVDF 141
             +  +G  LD R IRVD+
Sbjct:   178 ERANGMELDGRRIRVDY 194


>MGI|MGI:1933972 [details] [associations]
            symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0042802 "identical protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
            HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
            IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
            SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
            PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
            CleanEx:MM_TRA2A Genevestigator:Q6PFR5
            GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
        Length = 281

 Score = 123 (48.4 bits), Expect = 8.2e-06, P = 8.2e-06
 Identities = 27/77 (35%), Positives = 45/77 (58%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             +T + V  +S YTTE  + E+FSR G +  + +  D+ +    GF F  F   +D+++A+
Sbjct:   116 NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 175

Query:   125 KYISGTILDDRPIRVDF 141
             +  +G  LD R IRVD+
Sbjct:   176 ERANGMELDGRRIRVDY 192


>UNIPROTKB|Q13595 [details] [associations]
            symbol:TRA2A "Transformer-2 protein homolog alpha"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
            IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
            UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
            IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
            DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
            Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
            CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
            MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
            HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
            OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
            NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
            GermOnline:ENSG00000164548 Uniprot:Q13595
        Length = 282

 Score = 123 (48.4 bits), Expect = 8.2e-06, P = 8.2e-06
 Identities = 27/77 (35%), Positives = 45/77 (58%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             +T + V  +S YTTE  + E+FSR G +  + +  D+ +    GF F  F   +D+++A+
Sbjct:   118 NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 177

Query:   125 KYISGTILDDRPIRVDF 141
             +  +G  LD R IRVD+
Sbjct:   178 ERANGMELDGRRIRVDY 194


>RGD|1562563 [details] [associations]
            symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0042802 "identical protein binding"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
            HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
            UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
            Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
            Uniprot:B1WC25
        Length = 282

 Score = 123 (48.4 bits), Expect = 8.2e-06, P = 8.2e-06
 Identities = 27/77 (35%), Positives = 45/77 (58%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             +T + V  +S YTTE  + E+FSR G +  + +  D+ +    GF F  F   +D+++A+
Sbjct:   116 NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 175

Query:   125 KYISGTILDDRPIRVDF 141
             +  +G  LD R IRVD+
Sbjct:   176 ERANGMELDGRRIRVDY 192


>TAIR|locus:2075860 [details] [associations]
            symbol:U11/U12-31K "U11/U12-31K" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0032502 "developmental process" evidence=IMP] [GO:0051302
            "regulation of cell division" evidence=IMP] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
            GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
            GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
            EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
            ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
            EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
            TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
            ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
        Length = 261

 Score = 122 (48.0 bits), Expect = 8.9e-06, P = 8.9e-06
 Identities = 24/76 (31%), Positives = 43/76 (56%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             + +T+YV N+ F  T   I+ LFS  G++ ++ +  D++++   G  F L+ SRED   A
Sbjct:    55 SKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKA 114

Query:   124 VKYISGTILDDRPIRV 139
              + +   IL+ R + V
Sbjct:   115 ARSMDAKILNGRKLTV 130


>UNIPROTKB|E7ETC0 [details] [associations]
            symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
            ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
            Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
            Uniprot:E7ETC0
        Length = 135

 Score = 105 (42.0 bits), Expect = 9.8e-06, P = 9.8e-06
 Identities = 25/75 (33%), Positives = 40/75 (53%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             T+YVGN+S   TE  I +LFS+ G  K   M  +  S  P  +CF  FY   D   A+  
Sbjct:    10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAA 67

Query:   127 ISGTILDDRPIRVDF 141
             ++G  +  + ++V++
Sbjct:    68 MNGRKILGKEVKVNW 82


>TAIR|locus:2206850 [details] [associations]
            symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
            EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
            RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
            SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
            GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
            HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
            ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
        Length = 181

 Score = 116 (45.9 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 25/75 (33%), Positives = 42/75 (56%)

Query:    66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125
             T +YV  +SF TTE+ + + F + G +  + M +DK +  P GF F  + + E+   A++
Sbjct:    77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query:   126 YISGTILDDRPIRVD 140
              + G  LD R I V+
Sbjct:   137 GMHGKFLDGRVIFVE 151


>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
            symbol:tra2a "transformer-2 alpha" species:7955
            "Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
            HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
            EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
            UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
            Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
            InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
        Length = 297

 Score = 122 (48.0 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 27/77 (35%), Positives = 44/77 (57%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             +T + V  +S YTTE  + E+FSR G +  + +  D+ +    GF F  F   +D ++A+
Sbjct:   134 NTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHIDDAKEAM 193

Query:   125 KYISGTILDDRPIRVDF 141
             +  +G  LD R IRVD+
Sbjct:   194 ERANGMELDGRRIRVDY 210


>TAIR|locus:2151779 [details] [associations]
            symbol:ALY4 "ALWAYS EARLY 4" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715
            Pfam:PF13865 KO:K12881 HOGENOM:HOG000239962 EMBL:BT010588
            EMBL:AK227931 IPI:IPI00538146 RefSeq:NP_198588.2 UniGene:At.22374
            ProteinModelPortal:Q6NQ72 SMR:Q6NQ72 STRING:Q6NQ72 PRIDE:Q6NQ72
            EnsemblPlants:AT5G37720.1 GeneID:833750 KEGG:ath:AT5G37720
            TAIR:At5g37720 InParanoid:Q6NQ72 OMA:EVERYAI PhylomeDB:Q6NQ72
            ProtClustDB:CLSN2689042 Genevestigator:Q6NQ72 Uniprot:Q6NQ72
        Length = 288

 Score = 121 (47.7 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 33/102 (32%), Positives = 51/102 (50%)

Query:    47 RDRRFPGTQEEFEEALLAS--------TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMG 98
             R R  P     FE+ L A+        T ++V N+    T E I ELFS  GE+++  + 
Sbjct:    66 RVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIH 125

Query:    99 LDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140
              DKN + P G    ++  R D   A+K  +  +LD RP+R++
Sbjct:   126 YDKNGR-PSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLE 166


>WB|WBGene00017135 [details] [associations]
            symbol:EEED8.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
            EMBL:FO081042 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
            PIR:T15924 RefSeq:NP_495022.2 ProteinModelPortal:Q09295 SMR:Q09295
            STRING:Q09295 EnsemblMetazoa:EEED8.4 GeneID:173921
            KEGG:cel:CELE_EEED8.4 UCSC:EEED8.4 CTD:173921 WormBase:EEED8.4
            InParanoid:Q09295 OMA:KSERASP NextBio:881673 Uniprot:Q09295
        Length = 191

 Score = 116 (45.9 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 34/114 (29%), Positives = 63/114 (55%)

Query:    29 ELSAMASLFKD-QRKLSAYRDRR--FPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYEL 85
             E+ A +++ +  Q K++ + +     P T+EE ++A+ A + V++GN+ F +T E+I E 
Sbjct:    17 EIEAESAILQQIQNKMAKHLESAAYVPPTEEE-QKAIDAKS-VFIGNVDFNSTIEEIEEH 74

Query:    86 FSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139
             F   G+I K  +  DK +K    F +  F      E+A+  ++G++   RPI V
Sbjct:    75 FKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENAL-VMNGSLFRSRPIVV 127


>ASPGD|ASPL0000007148 [details] [associations]
            symbol:AN10848 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:BN001301 GO:GO:0030529 ProteinModelPortal:C8V1W0
            EnsemblFungi:CADANIAT00007513 HOGENOM:HOG000181113 OMA:PAKRFEP
            Uniprot:C8V1W0
        Length = 340

 Score = 120 (47.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 31/95 (32%), Positives = 48/95 (50%)

Query:    49 RRFPG---TQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAG-EIKKIIMGLDKNSK 104
             RR PG      E  +A+     +YVGNM +    E + ELF+R G E+ +I + +D  S 
Sbjct:    60 RRTPGFGRQNREVPQAISEGRRLYVGNMPYTAKMEDVQELFTRGGFEVVRIDISIDPFSG 119

Query:   105 TPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139
                 +CF    ++E  E A+  + G  L  RP+R+
Sbjct:   120 RNPSYCFVDLSTKELAERAMAELDGGDLLGRPVRI 154

 Score = 35 (17.4 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 11/39 (28%), Positives = 15/39 (38%)

Query:   169 DPDILLLTLLNFMCWSDVVNIS-FHRTEAFNSFGGGDAY 206
             DPD +   +  F    ++ NIS          F  GD Y
Sbjct:   219 DPDAISSNITQFFKGYNLTNISKLFTPHPAKRFEPGDHY 257


>FB|FBgn0003742 [details] [associations]
            symbol:tra2 "transformer 2" species:7227 "Drosophila
            melanogaster" [GO:0007530 "sex determination" evidence=NAS]
            [GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0006397 "mRNA
            processing" evidence=NAS;IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0030237 "female sex determination" evidence=IMP]
            [GO:0036002 "pre-mRNA binding" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC;IDA] [GO:0048024 "regulation
            of mRNA splicing, via spliceosome" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IMP;IDA]
            [GO:0042802 "identical protein binding" evidence=IPI] [GO:0007283
            "spermatogenesis" evidence=NAS] [GO:0019102 "male somatic sex
            determination" evidence=TAS] [GO:0019101 "female somatic sex
            determination" evidence=NAS;TAS] [GO:0000245 "spliceosomal complex
            assembly" evidence=NAS] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:AE013599 GO:GO:0030154 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0007548
            GO:GO:0019102 GO:GO:0071011 GO:GO:0000245 GO:GO:0000381
            GeneTree:ENSGT00700000104309 GO:GO:0019101 KO:K12897
            eggNOG:NOG297815 EMBL:M23633 EMBL:X57484 EMBL:M30939 EMBL:M76381
            EMBL:AY058768 EMBL:J03155 PIR:A32373 PIR:D35846 PIR:S12003
            RefSeq:NP_476763.1 RefSeq:NP_476764.1 RefSeq:NP_476765.1
            RefSeq:NP_476766.1 RefSeq:NP_599107.1 RefSeq:NP_995834.1
            RefSeq:NP_995835.1 UniGene:Dm.4216 ProteinModelPortal:P19018
            SMR:P19018 DIP:DIP-17430N IntAct:P19018 MINT:MINT-277223
            STRING:P19018 PaxDb:P19018 PRIDE:P19018 EnsemblMetazoa:FBtr0089617
            EnsemblMetazoa:FBtr0089620 EnsemblMetazoa:FBtr0089621 GeneID:36619
            KEGG:dme:Dmel_CG10128 CTD:36619 FlyBase:FBgn0003742
            InParanoid:P19018 OMA:KDACTGM OrthoDB:EOG4TQJSF PhylomeDB:P19018
            GenomeRNAi:36619 NextBio:799520 Bgee:P19018 GermOnline:CG10128
            Uniprot:P19018
        Length = 264

 Score = 120 (47.3 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             AS  + V  ++  T++ ++ ELF++ G I++I M +D  ++   GFCF  F    D   A
Sbjct:    95 ASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAA 154

Query:   124 VKYISGTILDDRPIRVDF 141
                 SG  +D R IRVDF
Sbjct:   155 KDSCSGIEVDGRRIRVDF 172


>UNIPROTKB|Q9Y4C8 [details] [associations]
            symbol:RBM19 "Probable RNA-binding protein 19" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
            organismal development" evidence=IEA] [GO:0005694 "chromosome"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
            "nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
            evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
            development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
            GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
            HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
            EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
            EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
            RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
            PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
            STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
            PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
            Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
            KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
            HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
            PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
            OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
            EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
            CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
            Uniprot:Q9Y4C8
        Length = 960

 Score = 127 (49.8 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 28/88 (31%), Positives = 47/88 (53%)

Query:    55 QEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSK---TPCGFCF 111
             +EE EE  L   T+++ N++F TTEE++ E+FS+ G +K   +   KN        GF F
Sbjct:   719 EEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGF 778

Query:   112 ALFYSREDTEDAVKYISGTILDDRPIRV 139
               +   E  + A+K + G ++D   + V
Sbjct:   779 VEYRKPEQAQKALKQLQGHVVDGHKLEV 806

 Score = 120 (47.3 bits), Expect = 0.00013, P = 0.00013
 Identities = 29/90 (32%), Positives = 45/90 (50%)

Query:    50 RFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGF 109
             R  G  EE EE L  S  ++V N+ + +TEE + +LFS+ G + ++   +D  +K P GF
Sbjct:   387 RILGENEE-EEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGF 445

Query:   110 CFALFYSREDTEDAVKYISGTILDDRPIRV 139
              F  F   E    A   + G +   R + V
Sbjct:   446 AFITFMFPEHAVKAYSEVDGQVFQGRMLHV 475


>UNIPROTKB|F1NGK7 [details] [associations]
            symbol:RBM7 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000102191 OMA:DRHYSRE EMBL:AADN02041798
            EMBL:AADN02041799 IPI:IPI00586092 ProteinModelPortal:F1NGK7
            Ensembl:ENSGALT00000011352 Uniprot:F1NGK7
        Length = 279

 Score = 119 (46.9 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 29/81 (35%), Positives = 42/81 (51%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  T++VGN+    TEE I+ELF +AG + K+ +  DK+ K    F F  F   E     
Sbjct:     8 ADRTLFVGNLDPKVTEELIFELFHQAGPVIKVKIPKDKDGKQK-QFAFVSFKHEESVPYG 66

Query:   124 VKYISGTILDDRPIRVDFDWG 144
             +  ++G  L  RPI + F  G
Sbjct:    67 MNLLNGIKLYGRPINIQFRSG 87


>UNIPROTKB|K7GQZ8 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
            Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
        Length = 88

 Score = 101 (40.6 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 20/70 (28%), Positives = 37/70 (52%)

Query:    71 GNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGT 130
             GN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ ++G 
Sbjct:     2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61

Query:   131 ILDDRPIRVD 140
                 R +RVD
Sbjct:    62 EFSGRALRVD 71


>ZFIN|ZDB-GENE-031125-3 [details] [associations]
            symbol:rbm19 "RNA binding motif protein 19"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
            tract morphogenesis" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
            EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
            ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
            InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
        Length = 927

 Score = 125 (49.1 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 33/111 (29%), Positives = 57/111 (51%)

Query:    34 ASLFKDQRKLSAYR---DRRFPGT--QEEFEEALLASTTVYVGNMSFYTTEEQIYELFSR 88
             A+ FK+ R+ SA R   ++ F      +E EE +  S  +++ NM +  TEE + ELFS+
Sbjct:   363 ANNFKNDRR-SAKRSEMEKNFVRELKDDEEEEDVAESGRLFIRNMPYTCTEEDLKELFSK 421

Query:    89 AGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139
              G + +++  +D  +K P GF F  +   E+   A+  + G     R + V
Sbjct:   422 HGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQLDGHTFQGRVLHV 472


>UNIPROTKB|Q9BRL6 [details] [associations]
            symbol:SRSF8 "Serine/arginine-rich splicing factor 8"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0008380 EMBL:CH471065
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 KO:K12891 OrthoDB:EOG4D26RH EMBL:AF031165
            EMBL:AF031166 EMBL:AK023379 EMBL:AK312514 EMBL:BC057783
            IPI:IPI00477842 IPI:IPI00856075 RefSeq:NP_115285.1
            UniGene:Hs.476680 PDB:2DNM PDBsum:2DNM ProteinModelPortal:Q9BRL6
            SMR:Q9BRL6 STRING:Q9BRL6 PhosphoSite:Q9BRL6 DMDM:74761217
            PaxDb:Q9BRL6 PRIDE:Q9BRL6 GeneID:10929 KEGG:hsa:10929
            UCSC:uc001pff.3 CTD:10929 GeneCards:GC11P094801 H-InvDB:HIX0010038
            HGNC:HGNC:16988 MIM:603269 neXtProt:NX_Q9BRL6 PharmGKB:PA165543687
            EvolutionaryTrace:Q9BRL6 GenomeRNAi:10929 NextBio:41519
            CleanEx:HS_SFRS2B Genevestigator:Q9BRL6 Uniprot:Q9BRL6
        Length = 282

 Score = 118 (46.6 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 22/73 (30%), Positives = 41/73 (56%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             T+ V N+++ T+ + +  +F + G +  + +  + ++K P GF F  F+ R D +DA   
Sbjct:    15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74

Query:   127 ISGTILDDRPIRV 139
             + G  LD R +RV
Sbjct:    75 MDGAELDGRELRV 87


>MGI|MGI:1914260 [details] [associations]
            symbol:Rbm7 "RNA binding motif protein 7" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0007126 "meiosis"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1914260 GO:GO:0007126 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
            CTD:10179 eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
            KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN EMBL:AF458961 EMBL:AK005200
            EMBL:AK006755 EMBL:AK008645 EMBL:AK151056 EMBL:BC054774
            IPI:IPI00133061 RefSeq:NP_659197.2 UniGene:Mm.76911
            ProteinModelPortal:Q9CQT2 SMR:Q9CQT2 STRING:Q9CQT2
            PhosphoSite:Q9CQT2 PaxDb:Q9CQT2 PRIDE:Q9CQT2
            Ensembl:ENSMUST00000170000 GeneID:67010 KEGG:mmu:67010
            InParanoid:Q9CQT2 NextBio:323298 Bgee:Q9CQT2 CleanEx:MM_RBM7
            Genevestigator:Q9CQT2 GermOnline:ENSMUSG00000042396 Uniprot:Q9CQT2
        Length = 265

 Score = 117 (46.2 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 28/81 (34%), Positives = 43/81 (53%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  T++VGN+    TEE ++ELF +AG + K+ +  DK+ K    F F  F        A
Sbjct:     8 ADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLK-QFAFVNFKHEVSVPYA 66

Query:   124 VKYISGTILDDRPIRVDFDWG 144
             +  ++G  L  RPI++ F  G
Sbjct:    67 MNLLNGIKLFGRPIKIQFRSG 87


>RGD|1308017 [details] [associations]
            symbol:Rbm7 "RNA binding motif protein 7" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1308017 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00690000102191 OMA:DRHYSRE IPI:IPI00215147
            Ensembl:ENSRNOT00000007736 UCSC:RGD:1308017 ArrayExpress:F1M8F0
            Uniprot:F1M8F0
        Length = 265

 Score = 117 (46.2 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 28/81 (34%), Positives = 43/81 (53%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  T++VGN+    TEE ++ELF +AG + K+ +  DK+ K    F F  F        A
Sbjct:     8 ADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLK-QFAFVNFKHEVSVPYA 66

Query:   124 VKYISGTILDDRPIRVDFDWG 144
             +  ++G  L  RPI++ F  G
Sbjct:    67 MNLLNGIKLFGRPIKIQFRSG 87


>UNIPROTKB|Q56JZ7 [details] [associations]
            symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
            motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
            complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
            GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
            EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
            UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
            Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
            HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
            OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
        Length = 217

 Score = 115 (45.5 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 22/75 (29%), Positives = 42/75 (56%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             + +TVYV N+ F  T   +Y +FS+ G++ K+ +  DK+++   G  F LF  ++  ++ 
Sbjct:     8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNC 67

Query:   124 VKYISGTILDDRPIR 138
              + I+   L  R I+
Sbjct:    68 TRAINNKQLFGRVIK 82


>UNIPROTKB|Q8TBF4 [details] [associations]
            symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
            motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
            evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
            InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
            SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
            HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
            KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
            EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
            IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
            PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
            PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
            Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
            GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
            neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
            PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
            NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
            Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
        Length = 217

 Score = 115 (45.5 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 22/75 (29%), Positives = 42/75 (56%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             + +TVYV N+ F  T   +Y +FS+ G++ K+ +  DK+++   G  F LF  ++  ++ 
Sbjct:     8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 67

Query:   124 VKYISGTILDDRPIR 138
              + I+   L  R I+
Sbjct:    68 TRAINNKQLFGRVIK 82


>WB|WBGene00003904 [details] [associations]
            symbol:pabp-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
            "positive regulation of embryonic development" evidence=IMP]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0040011
            "locomotion" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
            endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
            GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
            eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
            GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
            RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
            DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
            PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
            GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
            WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
        Length = 205

 Score = 114 (45.2 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 28/87 (32%), Positives = 49/87 (56%)

Query:    54 TQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFAL 113
             T EE  EA   + +VYVGN+ +  T E+I + F   G + ++ +  D+ S  P GF +  
Sbjct:    68 TPEEKAEA--DAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVE 125

Query:   114 FYSREDTEDAVKYISGTILDDRPIRVD 140
             F  +E  ++A+  ++ ++L  R I+VD
Sbjct:   126 FTEKEGMQNALA-MTDSLLRGRQIKVD 151


>FB|FBgn0032620 [details] [associations]
            symbol:CG12288 species:7227 "Drosophila melanogaster"
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005875 "microtubule associated complex"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005875 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 HSSP:P52298
            EMBL:AY118842 ProteinModelPortal:Q8MSG1 SMR:Q8MSG1 STRING:Q8MSG1
            PaxDb:Q8MSG1 PRIDE:Q8MSG1 FlyBase:FBgn0032620 InParanoid:Q8MSG1
            OrthoDB:EOG40P2PK ArrayExpress:Q8MSG1 Bgee:Q8MSG1 Uniprot:Q8MSG1
        Length = 435

 Score = 120 (47.3 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 36/115 (31%), Positives = 55/115 (47%)

Query:    30 LSAMASLFKDQ--RKLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFS 87
             L+   S FK+   R   A    +F   +++      A  T++VG++ +  TEEQ+ E+FS
Sbjct:   222 LALNGSEFKENHLRVTPASMAEKFGQAKDQQPSDKDAKRTIFVGSLKYSATEEQLREIFS 281

Query:    88 RAGEIKKI--IMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140
               GEI  I  +   DK  K     CF     + D       ++ T+LDDRPI V+
Sbjct:   282 SCGEIDYIRCLQDGDKGCKGVAYVCF----QKPDAVGLALELNQTLLDDRPINVE 332


>FB|FBgn0027841 [details] [associations]
            symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
            subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
            cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
            factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
            "neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
            SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
            InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
            ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
        Length = 437

 Score = 120 (47.3 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 24/74 (32%), Positives = 43/74 (58%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEE++ E+FS  G +  + +  D+ S  P GF F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G  +  R +RVD
Sbjct:    77 LNGYEIGGRTLRVD 90


>UNIPROTKB|Q74DJ2 [details] [associations]
            symbol:GSU1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 99 (39.9 bits), Expect = 4.8e-05, P = 4.8e-05
 Identities = 21/72 (29%), Positives = 40/72 (55%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             +YVG+MS+  TE+ +  LFS AG +  + +  D  +    G  +    + E+ ++A++ +
Sbjct:     5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64

Query:   128 SGTILDDRPIRV 139
              G +L +R I V
Sbjct:    65 DGALLRNRVITV 76


>TIGR_CMR|GSU_1324 [details] [associations]
            symbol:GSU_1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 99 (39.9 bits), Expect = 4.8e-05, P = 4.8e-05
 Identities = 21/72 (29%), Positives = 40/72 (55%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             +YVG+MS+  TE+ +  LFS AG +  + +  D  +    G  +    + E+ ++A++ +
Sbjct:     5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64

Query:   128 SGTILDDRPIRV 139
              G +L +R I V
Sbjct:    65 DGALLRNRVITV 76


>UNIPROTKB|E1BTK3 [details] [associations]
            symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
            Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
            CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
            RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
            Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
            NextBio:20821039 Uniprot:E1BTK3
        Length = 216

 Score = 114 (45.2 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 22/75 (29%), Positives = 42/75 (56%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             + +TVYV N+ F  T   +Y +FS+ G++ K+ +  DK+++   G  F LF  +E  ++ 
Sbjct:     8 SKSTVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESAQNC 67

Query:   124 VKYISGTILDDRPIR 138
              + ++   L  R I+
Sbjct:    68 SRALNNKQLFGRVIK 82


>UNIPROTKB|E2RRF5 [details] [associations]
            symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
            GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
            Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
        Length = 968

 Score = 123 (48.4 bits), Expect = 5.7e-05, P = 5.7e-05
 Identities = 28/88 (31%), Positives = 46/88 (52%)

Query:    55 QEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSK---TPCGFCF 111
             +EE EE  L   T+++ N++F TTEE +  +FS+AG +K   +   KN        GF F
Sbjct:   719 EEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGF 778

Query:   112 ALFYSREDTEDAVKYISGTILDDRPIRV 139
               +   E  + A+K + G ++D   + V
Sbjct:   779 VEYRKPEQAQKALKQLQGHVVDSHKLEV 806

 Score = 115 (45.5 bits), Expect = 0.00054, P = 0.00054
 Identities = 27/87 (31%), Positives = 43/87 (49%)

Query:    53 GTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFA 112
             G  EE EE L  S  +++ N+ + +TEE +  LFS+ G + ++   +D  +K P GF F 
Sbjct:   393 GENEE-EEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFV 451

Query:   113 LFYSREDTEDAVKYISGTILDDRPIRV 139
              F   E    A   + G +   R + V
Sbjct:   452 TFIFPEHAVRAYAEVDGQVFQGRMLHV 478


>TAIR|locus:2119797 [details] [associations]
            symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
            EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
            UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
            EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
            TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
            PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
            Uniprot:Q67XI5
        Length = 152

 Score = 106 (42.4 bits), Expect = 6.0e-05, P = 6.0e-05
 Identities = 31/106 (29%), Positives = 51/106 (48%)

Query:    35 SLFKDQRKLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKK 94
             S       L  YR+ RFP  +       LAS  + V N+ F T+E+ +   FS  GEI +
Sbjct:    10 SFVASSSSLPNYRNLRFPKIKASLFNYPLASK-IMVRNLPFSTSEDFLKREFSAFGEIAE 68

Query:    95 IIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140
             + +  D+  K   G+ F  F S++D   A++ +   + + R I +D
Sbjct:    69 VKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYID 114


>UNIPROTKB|B1ANR1 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
            ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
            Ensembl:ENST00000451091 Uniprot:B1ANR1
        Length = 129

 Score = 98 (39.6 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 21/73 (28%), Positives = 39/73 (53%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             ++YVG++    TE  +YE FS AG +  I +  D  ++   G+ +  F    D E A+  
Sbjct:    12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query:   127 ISGTILDDRPIRV 139
             ++  ++  +PIR+
Sbjct:    72 MNFDVIKGKPIRI 84


>WB|WBGene00000774 [details] [associations]
            symbol:cpf-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
            interference" evidence=IMP] [GO:0006898 "receptor-mediated
            endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
            vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
            GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
            RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
            DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
            PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
            GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
            WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
            NextBio:893824 Uniprot:O45577
        Length = 336

 Score = 117 (46.2 bits), Expect = 6.7e-05, P = 6.7e-05
 Identities = 26/74 (35%), Positives = 44/74 (59%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+S+  +E+ I  +FS+AG +  I M  D+ +  P G+ F  F   +  E A++ 
Sbjct:    19 SVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRN 78

Query:   127 ISGTILDDRPIRVD 140
             ++G  L  R +RVD
Sbjct:    79 LNGYELSGRILRVD 92


>POMBASE|SPAC644.16 [details] [associations]
            symbol:SPAC644.16 "RNA-binding protein (predicted)"
            species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005849 "mRNA
            cleavage factor complex" evidence=ISO] [GO:0006378 "mRNA
            polyadenylation" evidence=ISO] [GO:0006379 "mRNA cleavage"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 PomBase:SPAC644.16 EMBL:CU329670
            GO:GO:0000166 Gene3D:3.30.70.330 eggNOG:NOG246793 GO:GO:0006378
            GO:GO:0003723 GO:GO:0006379 GO:GO:0005849 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4GQTF6 HSSP:P33240 RefSeq:NP_593884.1
            ProteinModelPortal:Q9P6P7 EnsemblFungi:SPAC644.16.1 GeneID:2543462
            KEGG:spo:SPAC644.16 OMA:SHEERAN NextBio:20804474 Uniprot:Q9P6P7
        Length = 422

 Score = 118 (46.6 bits), Expect = 7.6e-05, P = 7.6e-05
 Identities = 24/77 (31%), Positives = 41/77 (53%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             S  VYVGN+ +   EEQ+ ++F ++G +K   + +D  S  P G+ F  ++       AV
Sbjct:     4 SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63

Query:   125 KYISGTILDDRPIRVDF 141
             + ++      R +RVDF
Sbjct:    64 RNLNNYDAGTRRLRVDF 80


>UNIPROTKB|Q6IRQ4 [details] [associations]
            symbol:rbmx "RNA-binding motif protein, X chromosome"
            species:8355 "Xenopus laevis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
            InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
            RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
            ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
            Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
        Length = 370

 Score = 117 (46.2 bits), Expect = 8.0e-05, P = 8.0e-05
 Identities = 20/73 (27%), Positives = 43/73 (58%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             +++G ++  T E+ +  +F + G + ++++  D+ +    GF F  F S  D +DA + +
Sbjct:    10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69

Query:   128 SGTILDDRPIRVD 140
             +G  LD +PI+V+
Sbjct:    70 NGKALDGKPIKVE 82


>POMBASE|SPBC29A3.07c [details] [associations]
            symbol:sab14 "U2 snRNP-associated protein SF3B14
            ortholog (predicted)" species:4896 "Schizosaccharomyces pombe"
            [GO:0000384 "first spliceosomal transesterification activity"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=ISM] [GO:0005681
            "spliceosomal complex" evidence=NAS] [GO:0005686 "U2 snRNP"
            evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 PomBase:SPBC29A3.07c GO:GO:0000166
            EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
            GO:GO:0005686 eggNOG:COG0724 GO:GO:0045292 HOGENOM:HOG000276232
            PIR:T40078 HSSP:Q9Y3B4 ProteinModelPortal:O59670 IntAct:O59670
            STRING:O59670 OrthoDB:EOG4HB1W3 NextBio:20801589 GO:GO:0000384
            Uniprot:O59670
        Length = 115

 Score = 97 (39.2 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 22/77 (28%), Positives = 44/77 (57%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             ++ +++ N+SF  T E++Y+LF R G +++I +G   N+    G  F ++ + +D   A 
Sbjct:    11 NSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLG---NTVQTRGTAFVVYENVQDARRAC 67

Query:   125 KYISGTILDDRPIRVDF 141
             + +SG    DR + V +
Sbjct:    68 EKLSGYNFMDRYLVVHY 84


>UNIPROTKB|A9UMT9 [details] [associations]
            symbol:LOC100135403 "LOC100135403 protein" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
            EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
            STRING:A9UMT9 Uniprot:A9UMT9
        Length = 375

 Score = 117 (46.2 bits), Expect = 8.2e-05, P = 8.2e-05
 Identities = 20/73 (27%), Positives = 43/73 (58%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             +++G ++  T E+ +  +F + G + ++++  D+ +    GF F  F S  D +DA + +
Sbjct:    10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69

Query:   128 SGTILDDRPIRVD 140
             +G  LD +PI+V+
Sbjct:    70 NGKALDGKPIKVE 82


>UNIPROTKB|F1P133 [details] [associations]
            symbol:F1P133 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
            IPI:IPI00575891 ProteinModelPortal:F1P133
            Ensembl:ENSGALT00000006408 Uniprot:F1P133
        Length = 166

 Score = 108 (43.1 bits), Expect = 8.3e-05, P = 8.3e-05
 Identities = 25/76 (32%), Positives = 39/76 (51%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             S  V++G + +  TE  +  +FS+ GE+  I +  DK +    GFCF  +  +  T  AV
Sbjct:    35 SAWVFIGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAV 94

Query:   125 KYISGTILDDRPIRVD 140
                +G  +  R IRVD
Sbjct:    95 DNFNGIKIKGRTIRVD 110


>TAIR|locus:2077427 [details] [associations]
            symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
            EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
            ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
            GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
            OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
            Genevestigator:Q9SFB4 Uniprot:Q9SFB4
        Length = 143

 Score = 102 (41.0 bits), Expect = 8.7e-05, P = 8.7e-05
 Identities = 23/77 (29%), Positives = 39/77 (50%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             S+ +++G +S+   E+ + + FS  GE+ ++ +  DK S    GF F  F    D   A 
Sbjct:    40 SSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAK 99

Query:   125 KYISGTILDDRPIRVDF 141
               + G  L  RP+R+ F
Sbjct:   100 DAMDGKGLLGRPLRISF 116


>TAIR|locus:2049721 [details] [associations]
            symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
            "response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
            "response to abscisic acid stimulus" evidence=IEP] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
            response to bacterium" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
            GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
            EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
            RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
            SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
            PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
            GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
            InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
            ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
            Uniprot:Q9ZUU4
        Length = 289

 Score = 115 (45.5 bits), Expect = 8.8e-05, P = 8.8e-05
 Identities = 26/82 (31%), Positives = 43/82 (52%)

Query:    59 EEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSRE 118
             E++  A   ++VGN+ F     Q+ +LF  AG ++ + +  DK +    GF F    S  
Sbjct:    84 EQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVS 143

Query:   119 DTEDAVKYISGTILDDRPIRVD 140
             + E A +  +G  LD RP+RV+
Sbjct:   144 EVEAAAQQFNGYELDGRPLRVN 165

 Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
 Identities = 25/72 (34%), Positives = 42/72 (58%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             VYVGN+S+   +  +  LFS  G++ +  +  D++S    GF F  + S ++ ++A+K +
Sbjct:   206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265

Query:   128 SGTILDDRPIRV 139
              G  LD R IRV
Sbjct:   266 DGADLDGRQIRV 277


>WB|WBGene00004705 [details] [associations]
            symbol:rsp-8 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040007
            "growth" evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
            "oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0008406 "gonad development" evidence=IMP] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0040010
            GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
            GO:GO:0000398 GeneTree:ENSGT00700000104309 HSSP:Q14103 KO:K12897
            eggNOG:NOG297815 EMBL:Z92826 GeneID:176613 KEGG:cel:CELE_C18D11.4
            CTD:176613 PIR:T19389 RefSeq:NP_001255142.1
            ProteinModelPortal:Q9XTZ2 SMR:Q9XTZ2 DIP:DIP-26572N
            MINT:MINT-1084022 STRING:Q9XTZ2 PaxDb:Q9XTZ2
            EnsemblMetazoa:C18D11.4a.1 EnsemblMetazoa:C18D11.4a.2
            UCSC:C18D11.4.1 WormBase:C18D11.4a InParanoid:Q9XTZ2 OMA:RENPQPS
            NextBio:893300 Uniprot:Q9XTZ2
        Length = 309

 Score = 115 (45.5 bits), Expect = 0.00010, P = 0.00010
 Identities = 32/90 (35%), Positives = 45/90 (50%)

Query:    53 GTQEEFE-EALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCF 111
             G  ++++ E    S  + V N+S YTTE+ + ++F   GEI K  +  D+ S    GF F
Sbjct:    62 GRNQQYDRENPQPSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGF 121

Query:   112 ALFYSREDTEDAVKYISGTILDDRPIRVDF 141
               F   ED   A   +  T LD   IRVDF
Sbjct:   122 IYFNLIEDATAARDKLCNTDLDGHKIRVDF 151


>UNIPROTKB|E5RH24 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
            ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
            ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
        Length = 118

 Score = 96 (38.9 bits), Expect = 0.00011, P = 0.00011
 Identities = 21/73 (28%), Positives = 39/73 (53%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             ++YVG++    TE  +YE FS AG I  I +  D  ++   G+ +  F    D E A+  
Sbjct:    12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query:   127 ISGTILDDRPIRV 139
             ++  ++  +P+R+
Sbjct:    72 MNFDVIKGKPVRI 84


>UNIPROTKB|E5RJB9 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
            ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
            ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
        Length = 129

 Score = 96 (38.9 bits), Expect = 0.00011, P = 0.00011
 Identities = 21/73 (28%), Positives = 39/73 (53%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             ++YVG++    TE  +YE FS AG I  I +  D  ++   G+ +  F    D E A+  
Sbjct:    12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query:   127 ISGTILDDRPIRV 139
             ++  ++  +P+R+
Sbjct:    72 MNFDVIKGKPVRI 84


>POMBASE|SPBC16E9.12c [details] [associations]
            symbol:pab2 "poly(A) binding protein Pab2" species:4896
            "Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
            poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
            "negative regulation of G2/M transition of mitotic cell cycle"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
            GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
            GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
            GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
            PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
            STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
            KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
            NextBio:20800884 Uniprot:O14327
        Length = 166

 Score = 107 (42.7 bits), Expect = 0.00011, P = 0.00011
 Identities = 28/115 (24%), Positives = 60/115 (52%)

Query:    26 LLGELSAMASLFKDQRKLSAYRDRRFPGTQE-EFEEALLASTTVYVGNMSFYTTEEQIYE 84
             LL     +A +  +  KL A +++    T+    ++  + + +VYVGN+ +  T E++  
Sbjct:    14 LLEMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKESIDAQSVYVGNVDYSVTPEELQS 73

Query:    85 LFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139
              F+  G + ++ +  DK +  P GF +  F       +A+  ++G++L +RP++V
Sbjct:    74 HFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LLNGSMLHERPLKV 127


>ASPGD|ASPL0000000406 [details] [associations]
            symbol:AN6501 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
            eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
            RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
            STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
            KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
        Length = 352

 Score = 115 (45.5 bits), Expect = 0.00013, P = 0.00013
 Identities = 25/74 (33%), Positives = 44/74 (59%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             TVY+GN+    ++  ++EL  +AG I  + +  D+ +++  G+ F  F S ED E A + 
Sbjct:    14 TVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRI 73

Query:   127 ISGTILDDRPIRVD 140
             ++G  L  +PIRV+
Sbjct:    74 MNGIRLYGKPIRVN 87


>UNIPROTKB|H3BR27 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
            ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
            Ensembl:ENST00000568578 Uniprot:H3BR27
        Length = 78

 Score = 95 (38.5 bits), Expect = 0.00014, P = 0.00014
 Identities = 18/69 (26%), Positives = 38/69 (55%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             +++G ++  T E+ +  +F + G I ++++  D+ +    GF F  F S  D +DA + +
Sbjct:    10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69

Query:   128 SGTILDDRP 136
             +G +  D P
Sbjct:    70 NGKMTVDIP 78


>POMBASE|SPBC428.12c [details] [associations]
            symbol:SPBC428.12c "RNA-binding protein" species:4896
            "Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 PomBase:SPBC428.12c GO:GO:0005829 GO:GO:0005634
            GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0003723
            HSSP:Q9UNP9 PIR:T40464 RefSeq:NP_595190.1 ProteinModelPortal:O94359
            EnsemblFungi:SPBC428.12c.1 GeneID:2540852 KEGG:spo:SPBC428.12c
            eggNOG:NOG331137 OrthoDB:EOG4TJ03G NextBio:20801968 Uniprot:O94359
        Length = 116

 Score = 95 (38.5 bits), Expect = 0.00014, P = 0.00014
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKT-PCGFCFALFYSREDTEDAVK 125
             TV+VGN++   TE  +Y  F   GEI  I + L +  K     + F  F   ED ++A++
Sbjct:     7 TVHVGNLAPSVTESLLYNAFIPFGEI--ISVALHRKEKAVDRSYAFVEFDEPEDAKEAME 64

Query:   126 YISGTILDDRPIRV 139
              ++ +IL DR IRV
Sbjct:    65 NMNYSILCDRCIRV 78


>TAIR|locus:2124670 [details] [associations]
            symbol:AT4G10110 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 KO:K12831 UniGene:At.2966
            UniGene:At.33652 EMBL:BT003697 EMBL:AK119126 IPI:IPI00532832
            RefSeq:NP_192749.2 ProteinModelPortal:Q8GW25 SMR:Q8GW25
            IntAct:Q8GW25 PaxDb:Q8GW25 PRIDE:Q8GW25 EnsemblPlants:AT4G10110.1
            GeneID:826602 KEGG:ath:AT4G10110 TAIR:At4g10110 eggNOG:NOG276964
            HOGENOM:HOG000238526 InParanoid:Q8GW25 OMA:SLEYSRR PhylomeDB:Q8GW25
            ProtClustDB:CLSN2690837 Genevestigator:Q8GW25 Uniprot:Q8GW25
        Length = 173

 Score = 107 (42.7 bits), Expect = 0.00015, P = 0.00015
 Identities = 23/76 (30%), Positives = 44/76 (57%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             ++ TVY+GN+    ++  +Y++  +AG +  + +  DK +  P GF FA + + E  + A
Sbjct:     5 SNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYA 64

Query:   124 VKYISGTI-LDDRPIR 138
             VK  SG + L +R ++
Sbjct:    65 VKLFSGLVSLYNRTLK 80


>ZFIN|ZDB-GENE-040426-1076 [details] [associations]
            symbol:eif3g "eukaryotic translation initiation
            factor 3, subunit G" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0006413 "translational initiation"
            evidence=IEA;ISS] [GO:0005852 "eukaryotic translation initiation
            factor 3 complex" evidence=ISS] [GO:0003743 "translation initiation
            factor activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-040426-1076 GO:GO:0000166 GO:GO:0006413
            Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
            HSSP:O75821 GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
            InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
            HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
            EMBL:AY648835 EMBL:BC049046 EMBL:BC153489 IPI:IPI00500209
            RefSeq:NP_957293.1 UniGene:Dr.161 ProteinModelPortal:Q6DRC4
            SMR:Q6DRC4 STRING:Q6DRC4 PRIDE:Q6DRC4 Ensembl:ENSDART00000018071
            Ensembl:ENSDART00000127487 GeneID:393974 KEGG:dre:393974
            InParanoid:Q7ZUH3 OMA:NSEFDAP NextBio:20814945 Bgee:Q6DRC4
            Uniprot:Q6DRC4
        Length = 293

 Score = 113 (44.8 bits), Expect = 0.00016, P = 0.00016
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             + T+ V N+S  T E  + ELF   G I +I +  DKN+    GF F  F+ RED   A+
Sbjct:   211 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGFAFISFHRREDAARAI 270

Query:   125 KYISGTILDDRPIRVDF 141
               +SG   D   + V++
Sbjct:   271 AGVSGFGYDHLILNVEW 287


>UNIPROTKB|J9NZ20 [details] [associations]
            symbol:ZCRB1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00600000084414
            CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AAEX03015129
            RefSeq:XP_534835.1 ProteinModelPortal:J9NZ20
            Ensembl:ENSCAFT00000049381 GeneID:477640 KEGG:cfa:477640
            Uniprot:J9NZ20
        Length = 217

 Score = 110 (43.8 bits), Expect = 0.00017, P = 0.00017
 Identities = 22/75 (29%), Positives = 41/75 (54%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             + +TVYV N+ F  T   +Y +FS+ G++ K+ +  DK+++   G  F LF  ++   + 
Sbjct:     8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNC 67

Query:   124 VKYISGTILDDRPIR 138
              + I+   L  R I+
Sbjct:    68 TRAINNKQLFGRVIK 82


>MGI|MGI:1914447 [details] [associations]
            symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
            [GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            MGI:MGI:1914447 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
            GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 CTD:85437
            HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
            eggNOG:NOG270852 EMBL:AB095989 EMBL:AK012852 EMBL:AK170136
            EMBL:BC058368 IPI:IPI00112291 IPI:IPI00798500 RefSeq:NP_080301.1
            UniGene:Mm.293181 ProteinModelPortal:Q9CZ96 SMR:Q9CZ96
            STRING:Q9CZ96 PhosphoSite:Q9CZ96 PRIDE:Q9CZ96
            Ensembl:ENSMUST00000076070 Ensembl:ENSMUST00000162160 GeneID:67197
            KEGG:mmu:67197 UCSC:uc007xiu.1 UCSC:uc007xiv.1 InParanoid:Q9CZ96
            ChiTaRS:ZCRB1 NextBio:323848 Bgee:Q9CZ96 CleanEx:MM_ZCRB1
            Genevestigator:Q9CZ96 GermOnline:ENSMUSG00000022635 Uniprot:Q9CZ96
        Length = 217

 Score = 110 (43.8 bits), Expect = 0.00017, P = 0.00017
 Identities = 22/75 (29%), Positives = 41/75 (54%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             + +TVYV N+ F  T   +Y +FS+ G++ K+ +  DK+++   G  F LF  ++   + 
Sbjct:     8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNC 67

Query:   124 VKYISGTILDDRPIR 138
              + I+   L  R I+
Sbjct:    68 TRAINNKQLFGRVIK 82


>RGD|1309851 [details] [associations]
            symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
            complex" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            RGD:1309851 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
            GeneTree:ENSGT00600000084414 HSSP:P62995 CTD:85437
            HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
            eggNOG:NOG270852 EMBL:BC099747 IPI:IPI00211761
            RefSeq:NP_001030112.1 UniGene:Rn.136969 ProteinModelPortal:Q499V6
            SMR:Q499V6 STRING:Q499V6 Ensembl:ENSRNOT00000006780 GeneID:362990
            KEGG:rno:362990 InParanoid:Q499V6 NextBio:682050
            Genevestigator:Q499V6 GermOnline:ENSRNOG00000004996 Uniprot:Q499V6
        Length = 217

 Score = 110 (43.8 bits), Expect = 0.00017, P = 0.00017
 Identities = 22/75 (29%), Positives = 41/75 (54%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             + +TVYV N+ F  T   +Y +FS+ G++ K+ +  DK+++   G  F LF  ++   + 
Sbjct:     8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNC 67

Query:   124 VKYISGTILDDRPIR 138
              + I+   L  R I+
Sbjct:    68 TRAINNKQLFGRVIK 82


>DICTYBASE|DDB_G0291836 [details] [associations]
            symbol:DDB_G0291836 "Squamous cell carcinoma antigen
            recognized by T-cells 3" species:44689 "Dictyostelium discoideum"
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
            dictyBase:DDB_G0291836 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0005622 GO:GO:0006396 EMBL:AAFI02000185
            eggNOG:COG5107 OMA:SQAVMKM RefSeq:XP_629950.1
            ProteinModelPortal:Q54E37 EnsemblProtists:DDB0191602 GeneID:8628356
            KEGG:ddi:DDB_G0291836 InParanoid:Q54E37 Uniprot:Q54E37
        Length = 949

 Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
 Identities = 28/90 (31%), Positives = 51/90 (56%)

Query:    52 PGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCF 111
             P +++E E+       + + N+SF T E  ++++F + G+IK + + LDKN K+  G CF
Sbjct:   699 PTSKKEKEKEKDLPKKLIILNLSFDTAEPDLHKIFDKYGQIKSLKLVLDKNGKSK-GICF 757

Query:   112 ALFYSREDTEDAVKYISGTILDDRPIRVDF 141
              L+ S E    A++ +   I+ +R I V +
Sbjct:   758 ILYKSHESANKALE-MDQQIIKNRTICVQY 786


>UNIPROTKB|F1RKD1 [details] [associations]
            symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0040019 "positive regulation of embryonic development"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
            GeneTree:ENSGT00700000104575 EMBL:CT971483
            Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
        Length = 965

 Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
 Identities = 27/88 (30%), Positives = 45/88 (51%)

Query:    55 QEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSK---TPCGFCF 111
             +EE EE  L   T+++ N++F TTEE +  +FS+ G +K   +   KN        GF F
Sbjct:   724 EEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGF 783

Query:   112 ALFYSREDTEDAVKYISGTILDDRPIRV 139
               +   E  + A+K + G ++D   + V
Sbjct:   784 VEYKKPEQAQKALKQLQGHVVDGHKLEV 811

 Score = 114 (45.2 bits), Expect = 0.00070, P = 0.00070
 Identities = 29/95 (30%), Positives = 48/95 (50%)

Query:    45 AYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSK 104
             A++ R   G  EE EE L  S  ++V N+ + ++EE + +LFS+ G + ++   +D  +K
Sbjct:   384 AWQGRTL-GEHEE-EEDLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTK 441

Query:   105 TPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139
              P GF F  F   E    A   + G +   R + V
Sbjct:   442 KPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 476


>UNIPROTKB|E1BV45 [details] [associations]
            symbol:RNPS1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003730 GeneTree:ENSGT00700000104336 EMBL:AADN02049470
            IPI:IPI00602926 ProteinModelPortal:E1BV45
            Ensembl:ENSGALT00000015109 OMA:LNPPKCT Uniprot:E1BV45
        Length = 243

 Score = 111 (44.1 bits), Expect = 0.00018, P = 0.00018
 Identities = 32/104 (30%), Positives = 55/104 (52%)

Query:    39 DQRKLSAYRDRRFPGTQEEFEEALLAS----TTVYVGNMSFYTTEEQIYELFSRAGEIKK 94
             D R+ S  R +  P  ++E E    +     T V+VG ++   T++ I E+FS  G+IK 
Sbjct:   132 DNRRRS--RSKSKPPKRDEKERKRRSPSPRPTKVHVGRLTRNVTKDHIMEIFSTYGKIKM 189

Query:    95 IIMGLDK-NSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPI 137
             I M +D+ N     G+ +  F + +D E A+K++ G  +D + I
Sbjct:   190 IDMPVDRLNPHLSKGYAYVEFENPDDAEKALKHMDGGQIDGQEI 233


>UNIPROTKB|Q641B2 [details] [associations]
            symbol:eif3g-b "Eukaryotic translation initiation factor 3
            subunit G-B" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
            translation initiation factor 3 complex" evidence=ISS] [GO:0006413
            "translational initiation" evidence=ISS] [GO:0003743 "translation
            initiation factor activity" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
            PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
            HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
            PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC082427
            RefSeq:NP_001087888.1 UniGene:Xl.3547 ProteinModelPortal:Q641B2
            SMR:Q641B2 PRIDE:Q641B2 GeneID:447749 KEGG:xla:447749
            Xenbase:XB-GENE-6070476 Uniprot:Q641B2
        Length = 308

 Score = 107 (42.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 26/77 (33%), Positives = 39/77 (50%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             + T+ V N+S  T E  + ELF   G I +I +  DK +    GF F  F+ RED   A+
Sbjct:   226 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 285

Query:   125 KYISGTILDDRPIRVDF 141
               +SG   D   + V++
Sbjct:   286 AGVSGFGYDHLILNVEW 302

 Score = 40 (19.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query:    30 LSAMASLFKDQRKLSAYRDRRFPGTQEEFEEALLASTTVYV 70
             L  M     +Q  LS     + PG + E  +A ++ T  YV
Sbjct:   162 LGPMQKELAEQLGLSTADKEKAPGAEPEPAQAPVSKTGKYV 202


>WB|WBGene00004700 [details] [associations]
            symbol:rsp-3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0009790 "embryo development"
            evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
            evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0006376 "mRNA splice site selection"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
            GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0040011 GO:GO:0003723 GO:GO:0040035 eggNOG:COG0724
            GO:GO:0006376 GO:GO:0001703 GeneTree:ENSGT00700000104103
            HOGENOM:HOG000276234 EMBL:AF242767 EMBL:AL132904 RefSeq:NP_499649.2
            ProteinModelPortal:Q9NEW6 SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6
            PRIDE:Q9NEW6 EnsemblMetazoa:Y111B2A.18.1
            EnsemblMetazoa:Y111B2A.18.2 EnsemblMetazoa:Y111B2A.18.3
            GeneID:176688 KEGG:cel:CELE_Y111B2A.18 UCSC:Y111B2A.18.1 CTD:176688
            WormBase:Y111B2A.18 InParanoid:Q9NEW6 KO:K12890 OMA:MPRGGSE
            NextBio:893608 Uniprot:Q9NEW6
        Length = 258

 Score = 111 (44.1 bits), Expect = 0.00021, P = 0.00021
 Identities = 28/77 (36%), Positives = 41/77 (53%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             VYVGN+     E+++ ++F + G IK + +   K+ + P  F F  F    D EDAV+  
Sbjct:    11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDI---KSGRGPA-FAFVEFEDHRDAEDAVRAR 66

Query:   128 SGTILDDRPIRVDFDWG 144
              G   D R IRV+F  G
Sbjct:    67 DGYEFDGRRIRVEFTRG 83


>UNIPROTKB|Q9NEW6 [details] [associations]
            symbol:rsp-3 "Probable splicing factor,
            arginine/serine-rich 3" species:6239 "Caenorhabditis elegans"
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003723 "RNA binding"
            evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
            GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723 GO:GO:0040035
            eggNOG:COG0724 GO:GO:0006376 GO:GO:0001703
            GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 EMBL:AF242767
            EMBL:AL132904 RefSeq:NP_499649.2 ProteinModelPortal:Q9NEW6
            SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6 PRIDE:Q9NEW6
            EnsemblMetazoa:Y111B2A.18.1 EnsemblMetazoa:Y111B2A.18.2
            EnsemblMetazoa:Y111B2A.18.3 GeneID:176688 KEGG:cel:CELE_Y111B2A.18
            UCSC:Y111B2A.18.1 CTD:176688 WormBase:Y111B2A.18 InParanoid:Q9NEW6
            KO:K12890 OMA:MPRGGSE NextBio:893608 Uniprot:Q9NEW6
        Length = 258

 Score = 111 (44.1 bits), Expect = 0.00021, P = 0.00021
 Identities = 28/77 (36%), Positives = 41/77 (53%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             VYVGN+     E+++ ++F + G IK + +   K+ + P  F F  F    D EDAV+  
Sbjct:    11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDI---KSGRGPA-FAFVEFEDHRDAEDAVRAR 66

Query:   128 SGTILDDRPIRVDFDWG 144
              G   D R IRV+F  G
Sbjct:    67 DGYEFDGRRIRVEFTRG 83


>ZFIN|ZDB-GENE-010328-19 [details] [associations]
            symbol:eif4h "eukaryotic translation initiation
            factor 4h" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-010328-19 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG018193
            HOGENOM:HOG000013063 OrthoDB:EOG46DM3S eggNOG:NOG240551
            EMBL:BC065640 IPI:IPI00481882 UniGene:Dr.76638
            ProteinModelPortal:Q6P0F5 SMR:Q6P0F5 STRING:Q6P0F5 PRIDE:Q6P0F5
            InParanoid:Q6P0F5 NextBio:20816803 ArrayExpress:Q6P0F5 Bgee:Q6P0F5
            Uniprot:Q6P0F5
        Length = 263

 Score = 111 (44.1 bits), Expect = 0.00022, P = 0.00022
 Identities = 27/78 (34%), Positives = 41/78 (52%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             T YVGN+ F T +  I  +F R   ++ + +  DK +    GFC+  F   E  ++A+ Y
Sbjct:    45 TAYVGNLPFNTVQGDIDAIF-RDLSVRSVRLVRDKETDKFKGFCYVEFDDLESLKEALTY 103

Query:   127 ISGTILDDRPIRVDFDWG 144
               G +L DR +RVD   G
Sbjct:   104 -DGALLGDRSLRVDIAEG 120


>UNIPROTKB|F1N0L5 [details] [associations]
            symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0040019 "positive regulation of embryonic development"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
            GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
            EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
            EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
            Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
        Length = 920

 Score = 118 (46.6 bits), Expect = 0.00022, P = 0.00022
 Identities = 27/88 (30%), Positives = 45/88 (51%)

Query:    55 QEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSK---TPCGFCF 111
             +EE EE  L   T+++ N++F TTEE +  +FS+ G +K   +   KN        GF F
Sbjct:   679 EEEEEEESLPGCTLFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGF 738

Query:   112 ALFYSREDTEDAVKYISGTILDDRPIRV 139
               +   E  + A+K + G ++D   + V
Sbjct:   739 VEYRKPEQAQKALKQLQGHVVDGHKLEV 766

 Score = 117 (46.2 bits), Expect = 0.00029, P = 0.00029
 Identities = 28/87 (32%), Positives = 44/87 (50%)

Query:    53 GTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFA 112
             G  EE EE L  S  ++V N+ + ++EE + +LFSR G + ++   +D  +K P GF F 
Sbjct:   351 GEHEE-EEDLADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFV 409

Query:   113 LFYSREDTEDAVKYISGTILDDRPIRV 139
              F   E    A   + G +   R + V
Sbjct:   410 TFMFPEHAVKAYAEVDGQVFQGRMLHV 436


>TAIR|locus:2173338 [details] [associations]
            symbol:SC35 "ortholog of human splicing factor SC35"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
            "membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0030422 "production of siRNA involved in RNA interference"
            evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
            GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
            HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
            EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
            RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
            UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
            PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
            EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
            TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
            ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
        Length = 303

 Score = 112 (44.5 bits), Expect = 0.00023, P = 0.00023
 Identities = 21/75 (28%), Positives = 43/75 (57%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             ++ V N++F TT + +Y LF++ G++  + +  D+ +    GF F  +  +++   AV+ 
Sbjct:    17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query:   127 ISGTILDDRPIRVDF 141
             + G ++D R I V F
Sbjct:    77 LDGRVVDGREITVQF 91


>GENEDB_PFALCIPARUM|MAL13P1.338 [details] [associations]
            symbol:MAL13P1.338 "u1 small nuclear
            ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
            [GO:0005685 "U1 snRNP" evidence=ISS] [GO:0006396 "RNA processing"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
            InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
            ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
            GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
            HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
        Length = 423

 Score = 114 (45.2 bits), Expect = 0.00023, P = 0.00023
 Identities = 31/113 (27%), Positives = 59/113 (52%)

Query:    38 KDQRKLSAYRDRRFPGTQEEFE----EALLAST--TVYVGNMSFYTTEEQIYELFSRAGE 91
             K +++  AY +      ++E++    E L +    T+++G +S+  +E+++ + F   G+
Sbjct:    64 KKKKEKMAYNELILKEKRKEYDPFKNEDLTSDPKKTLFIGRLSYEVSEQKLKKEFESYGK 123

Query:    92 IKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWG 144
             IK + +  DKN K P G+ F  F   +   DA K   G  +++R I VD + G
Sbjct:   124 IKTVKIIYDKNLK-PRGYAFIEFEHTKSMNDAYKLADGKKIENRRILVDIERG 175


>UNIPROTKB|Q8ID37 [details] [associations]
            symbol:MAL13P1.338 "U1 small nuclear ribonucleoprotein,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005685 "U1
            snRNP" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
            InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
            ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
            GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
            HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
        Length = 423

 Score = 114 (45.2 bits), Expect = 0.00023, P = 0.00023
 Identities = 31/113 (27%), Positives = 59/113 (52%)

Query:    38 KDQRKLSAYRDRRFPGTQEEFE----EALLAST--TVYVGNMSFYTTEEQIYELFSRAGE 91
             K +++  AY +      ++E++    E L +    T+++G +S+  +E+++ + F   G+
Sbjct:    64 KKKKEKMAYNELILKEKRKEYDPFKNEDLTSDPKKTLFIGRLSYEVSEQKLKKEFESYGK 123

Query:    92 IKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWG 144
             IK + +  DKN K P G+ F  F   +   DA K   G  +++R I VD + G
Sbjct:   124 IKTVKIIYDKNLK-PRGYAFIEFEHTKSMNDAYKLADGKKIENRRILVDIERG 175


>UNIPROTKB|Q6DJI8 [details] [associations]
            symbol:eif3g-a "Eukaryotic translation initiation factor 3
            subunit G-A" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
            translation initiation factor 3 complex" evidence=ISS] [GO:0006413
            "translational initiation" evidence=ISS] [GO:0003743 "translation
            initiation factor activity" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
            PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
            HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
            PANTHER:PTHR10352 Pfam:PF12353 EMBL:BC075190 RefSeq:NP_001086477.1
            UniGene:Xl.48772 ProteinModelPortal:Q6DJI8 SMR:Q6DJI8 GeneID:446311
            KEGG:xla:446311 CTD:446311 Xenbase:XB-GENE-6251503
            HOVERGEN:HBG026850 Uniprot:Q6DJI8
        Length = 308

 Score = 107 (42.7 bits), Expect = 0.00023, Sum P(2) = 0.00023
 Identities = 26/77 (33%), Positives = 39/77 (50%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             + T+ V N+S  T E  + ELF   G I +I +  DK +    GF F  F+ RED   A+
Sbjct:   226 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 285

Query:   125 KYISGTILDDRPIRVDF 141
               +SG   D   + V++
Sbjct:   286 AGVSGFGYDHLILNVEW 302

 Score = 39 (18.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query:    30 LSAMASLFKDQRKLSAYRDRRFPGTQEEFEEALLASTTVYV 70
             L  M     +Q  LS     + PG + E  +A ++ T  YV
Sbjct:   162 LGPMQKELAEQLGLSTGDKEKAPGAEPEPAQAPVSKTGKYV 202


>GENEDB_PFALCIPARUM|PF14_0057 [details] [associations]
            symbol:PF14_0057 "RNA binding protein,
            putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
            HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
            RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
            EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
            EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
            Uniprot:Q8IM34
        Length = 107

 Score = 93 (37.8 bits), Expect = 0.00023, P = 0.00023
 Identities = 21/78 (26%), Positives = 42/78 (53%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             + + N+     ++ I E+F R G+IK + + +D+ +    G+ F  + +  D + A+  +
Sbjct:    25 IIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAIDEM 84

Query:   128 SGTILDDRPIRVDFDWGF 145
              GT+L ++ I VD  W F
Sbjct:    85 DGTMLLNQEIHVD--WAF 100


>UNIPROTKB|Q8IM34 [details] [associations]
            symbol:PF14_0057 "RNA binding protein, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
            HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
            RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
            EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
            EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
            Uniprot:Q8IM34
        Length = 107

 Score = 93 (37.8 bits), Expect = 0.00023, P = 0.00023
 Identities = 21/78 (26%), Positives = 42/78 (53%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             + + N+     ++ I E+F R G+IK + + +D+ +    G+ F  + +  D + A+  +
Sbjct:    25 IIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAIDEM 84

Query:   128 SGTILDDRPIRVDFDWGF 145
              GT+L ++ I VD  W F
Sbjct:    85 DGTMLLNQEIHVD--WAF 100


>GENEDB_PFALCIPARUM|PFE0160c [details] [associations]
            symbol:PFE0160c "Ser/Arg-rich splicing factor,
            putative" species:5833 "Plasmodium falciparum" [GO:0005681
            "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AL844504
            HSSP:Q61474 RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468
            IntAct:Q8I468 MINT:MINT-1654287 PRIDE:Q8I468
            EnsemblProtists:PFE0160c:mRNA GeneID:812926 KEGG:pfa:PFE0160c
            EuPathDB:PlasmoDB:PF3D7_0503300 HOGENOM:HOG000284061 OMA:ANTESTQ
            ProtClustDB:CLSZ2848078 Uniprot:Q8I468
        Length = 308

 Score = 112 (44.5 bits), Expect = 0.00023, P = 0.00023
 Identities = 24/73 (32%), Positives = 40/73 (54%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             ++ +  + F T+   + E F R G IK + + +D  +K P GF F  FY  +D E A+K 
Sbjct:    13 SLLIRKLKFDTSPSIVREKFKRFGAIKDVYLPIDYYTKEPRGFGFVEFYDAKDAEQALKE 72

Query:   127 ISGTILDDRPIRV 139
             ++G+ +D   I V
Sbjct:    73 MNGSEIDGSRIEV 85


>UNIPROTKB|Q8I468 [details] [associations]
            symbol:PFE0160c "Ser/Arg-rich splicing factor, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
            complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HSSP:Q61474
            RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468 IntAct:Q8I468
            MINT:MINT-1654287 PRIDE:Q8I468 EnsemblProtists:PFE0160c:mRNA
            GeneID:812926 KEGG:pfa:PFE0160c EuPathDB:PlasmoDB:PF3D7_0503300
            HOGENOM:HOG000284061 OMA:ANTESTQ ProtClustDB:CLSZ2848078
            Uniprot:Q8I468
        Length = 308

 Score = 112 (44.5 bits), Expect = 0.00023, P = 0.00023
 Identities = 24/73 (32%), Positives = 40/73 (54%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             ++ +  + F T+   + E F R G IK + + +D  +K P GF F  FY  +D E A+K 
Sbjct:    13 SLLIRKLKFDTSPSIVREKFKRFGAIKDVYLPIDYYTKEPRGFGFVEFYDAKDAEQALKE 72

Query:   127 ISGTILDDRPIRV 139
             ++G+ +D   I V
Sbjct:    73 MNGSEIDGSRIEV 85


>UNIPROTKB|Q28CY2 [details] [associations]
            symbol:eif3g "Eukaryotic translation initiation factor 3
            subunit G" species:8364 "Xenopus (Silurana) tropicalis" [GO:0005852
            "eukaryotic translation initiation factor 3 complex" evidence=ISS]
            [GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
            Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
            eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
            HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
            CTD:446311 HOVERGEN:HBG026850 HOGENOM:HOG000239560 EMBL:CR855811
            EMBL:BC158150 RefSeq:NP_001016749.1 UniGene:Str.41964
            ProteinModelPortal:Q28CY2 SMR:Q28CY2 STRING:Q28CY2
            Ensembl:ENSXETT00000047701 GeneID:549503 KEGG:xtr:549503
            Xenbase:XB-GENE-6070198 Bgee:Q28CY2 Uniprot:Q28CY2
        Length = 310

 Score = 107 (42.7 bits), Expect = 0.00024, Sum P(2) = 0.00024
 Identities = 26/77 (33%), Positives = 39/77 (50%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             + T+ V N+S  T E  + ELF   G I +I +  DK +    GF F  F+ RED   A+
Sbjct:   228 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 287

Query:   125 KYISGTILDDRPIRVDF 141
               +SG   D   + V++
Sbjct:   288 AGVSGFGYDHLILNVEW 304

 Score = 39 (18.8 bits), Expect = 0.00024, Sum P(2) = 0.00024
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query:    30 LSAMASLFKDQRKLSAYRDRRFPGTQEEFEEALLASTTVYV 70
             L  M     +Q  LS     + PG + E  +A ++ T  YV
Sbjct:   164 LGPMQKELAEQLGLSTGDKEKAPGAEPEPAQAPVSKTGKYV 204


>UNIPROTKB|E2R1C1 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
            Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
        Length = 435

 Score = 114 (45.2 bits), Expect = 0.00024, P = 0.00024
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    21 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 80

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    81 LNGREFSGRALRVD 94


>ZFIN|ZDB-GENE-030131-579 [details] [associations]
            symbol:rbmx "RNA binding motif protein, X-linked"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0071347 "cellular response to interleukin-1" evidence=ISS]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
            organismal development" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
            GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
            EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
            UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
            PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
            GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
            OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
            Bgee:Q7ZWA3 Uniprot:Q7ZWA3
        Length = 379

 Score = 113 (44.8 bits), Expect = 0.00025, P = 0.00025
 Identities = 20/73 (27%), Positives = 44/73 (60%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             +++G ++  T+E+ +   FS+ G I ++++  D+ +    GF F  + +  D +DA + +
Sbjct:    10 LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREM 69

Query:   128 SGTILDDRPIRVD 140
             +G  LD +PI+V+
Sbjct:    70 NGKPLDGKPIKVE 82


>TAIR|locus:2083810 [details] [associations]
            symbol:PSRP2 "plastid-speciﬁc ribosomal protein 2"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
            "photosynthetic electron transport in photosystem I" evidence=RCA]
            [GO:0019288 "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
            targeting to chloroplast" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
            EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
            RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
            SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
            EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
            KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
            PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
            Genevestigator:Q8VYM4 Uniprot:Q8VYM4
        Length = 253

 Score = 110 (43.8 bits), Expect = 0.00026, P = 0.00026
 Identities = 24/73 (32%), Positives = 40/73 (54%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             VYVGN++   T+E +  LFS  G++    +     +    GF F  F S ED E A+  +
Sbjct:   179 VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVAL 238

Query:   128 SGTILDDRPIRVD 140
             + ++L+ + IRV+
Sbjct:   239 NNSLLEGQKIRVN 251


>ZFIN|ZDB-GENE-050522-496 [details] [associations]
            symbol:rbm14a "RNA binding motif protein 14a"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            ZFIN:ZDB-GENE-050522-496 GO:GO:0000166 GO:GO:0008270
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            GeneTree:ENSGT00390000020883 EMBL:BX511175 EMBL:BC095368
            EMBL:BC157376 IPI:IPI00487638 RefSeq:NP_001108616.1
            UniGene:Dr.77963 STRING:Q503D7 Ensembl:ENSDART00000009234
            Ensembl:ENSDART00000122073 GeneID:323721 KEGG:dre:323721 CTD:323721
            HOGENOM:HOG000063724 HOVERGEN:HBG062132 InParanoid:Q503D7
            OMA:HMERKEE OrthoDB:EOG4Q2DFQ NextBio:20808405 Uniprot:Q503D7
        Length = 471

 Score = 114 (45.2 bits), Expect = 0.00027, P = 0.00027
 Identities = 35/106 (33%), Positives = 52/106 (49%)

Query:    44 SAYRD---RRFPGTQEEFEEAL---LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIM 97
             SA RD   R + G     EE+    L ST V+VGN+    + E +Y+LFS  G++    +
Sbjct:    55 SAIRDLNGREYRGRSLVVEESKGRPLNSTKVFVGNLCASCSVEDLYDLFSPYGKV----L 110

Query:    98 GLDKNSKTPC---GFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140
               DK    P    G+ F     +ED E A++ + GT    RP+ V+
Sbjct:   111 DCDKVKTKPSSLTGYAFVYMEHKEDAEQAIEGLHGTTFMGRPLAVE 156


>CGD|CAL0005232 [details] [associations]
            symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
            eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
            ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
            GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
            Uniprot:Q5AB84
        Length = 400

 Score = 113 (44.8 bits), Expect = 0.00028, P = 0.00028
 Identities = 20/77 (25%), Positives = 44/77 (57%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             S T+++GN+SF    + ++ +F   G +    +    +++ P GF +  F S ++ + A+
Sbjct:   269 SDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAAL 328

Query:   125 KYISGTILDDRPIRVDF 141
             + ++G  ++ RP R+DF
Sbjct:   329 EAMNGEYIEGRPCRLDF 345


>UNIPROTKB|Q5AB84 [details] [associations]
            symbol:NSR1 "Potential nuclear localization sequence
            binding protein Nsr1p" species:237561 "Candida albicans SC5314"
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
            EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
            RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
            STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
            KEGG:cal:CaO19.6090 Uniprot:Q5AB84
        Length = 400

 Score = 113 (44.8 bits), Expect = 0.00028, P = 0.00028
 Identities = 20/77 (25%), Positives = 44/77 (57%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             S T+++GN+SF    + ++ +F   G +    +    +++ P GF +  F S ++ + A+
Sbjct:   269 SDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAAL 328

Query:   125 KYISGTILDDRPIRVDF 141
             + ++G  ++ RP R+DF
Sbjct:   329 EAMNGEYIEGRPCRLDF 345


>FB|FBgn0260944 [details] [associations]
            symbol:Rbp1 "RNA-binding protein 1" species:7227 "Drosophila
            melanogaster" [GO:0035327 "transcriptionally active chromatin"
            evidence=IDA] [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0045292
            "mRNA cis splicing, via spliceosome" evidence=IDA] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=ISS;NAS] [GO:0003729
            "mRNA binding" evidence=ISS;NAS] [GO:0006376 "mRNA splice site
            selection" evidence=ISS] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0035327 GO:GO:0045292 GO:GO:0006376 EMBL:L04929 EMBL:AY069252
            EMBL:S51691 EMBL:S51740 PIR:A46398 PIR:A47752 PIR:A48110
            RefSeq:NP_524307.1 RefSeq:NP_731510.1 UniGene:Dm.2213
            ProteinModelPortal:Q02427 SMR:Q02427 IntAct:Q02427 MINT:MINT-277307
            STRING:Q02427 PaxDb:Q02427 EnsemblMetazoa:FBtr0082277 GeneID:41294
            KEGG:dme:Dmel_CG17136 CTD:5947 FlyBase:FBgn0260944 eggNOG:NOG302928
            GeneTree:ENSGT00700000104452 InParanoid:Q02427 OMA:ARECRRG
            OrthoDB:EOG4CNP7N PhylomeDB:Q02427 GenomeRNAi:41294 NextBio:823159
            Bgee:Q02427 GermOnline:CG17136 Uniprot:Q02427
        Length = 144

 Score = 100 (40.3 bits), Expect = 0.00030, P = 0.00030
 Identities = 24/77 (31%), Positives = 39/77 (50%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             VYVGN+    ++ +I   F++ G ++ + +     ++ P GF F  F  R D EDA + +
Sbjct:    13 VYVGNLGSSASKHEIEGAFAKYGPLRNVWV-----ARNPPGFAFVEFEDRRDAEDATRAL 67

Query:   128 SGTILDDRPIRVDFDWG 144
              GT      IRV+   G
Sbjct:    68 DGTRCCGTRIRVEMSSG 84


>UNIPROTKB|K7EP16 [details] [associations]
            symbol:EIF3G "Eukaryotic translation initiation factor 3
            subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003743 "translation initiation factor
            activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
            EMBL:AC020931 PANTHER:PTHR10352 HGNC:HGNC:3274
            Ensembl:ENST00000593054 Uniprot:K7EP16
        Length = 118

 Score = 92 (37.4 bits), Expect = 0.00030, P = 0.00030
 Identities = 22/65 (33%), Positives = 32/65 (49%)

Query:    77 TTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRP 136
             T E  + ELF   G I +I +  DK +    GF F  F+ RED   A+  +SG   D   
Sbjct:    48 TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 107

Query:   137 IRVDF 141
             + V++
Sbjct:   108 LNVEW 112


>UNIPROTKB|E9PID8 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
            HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
            Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
            Uniprot:E9PID8
        Length = 438

 Score = 113 (44.8 bits), Expect = 0.00032, P = 0.00032
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>UNIPROTKB|J9P8Y3 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
            EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
        Length = 558

 Score = 114 (45.2 bits), Expect = 0.00035, P = 0.00035
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>UNIPROTKB|E1BZH4 [details] [associations]
            symbol:LOC100859865 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019953
            "sexual reproduction" evidence=IEA] [GO:0048589 "developmental
            growth" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063406
            OMA:PRTVSEP EMBL:AADN02026007 IPI:IPI00604206 RefSeq:XP_003642445.1
            Ensembl:ENSGALT00000001998 GeneID:100859865 KEGG:gga:100859865
            Uniprot:E1BZH4
        Length = 254

 Score = 109 (43.4 bits), Expect = 0.00036, P = 0.00036
 Identities = 28/92 (30%), Positives = 46/92 (50%)

Query:    53 GTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFA 112
             G++++ E       T YVGN+ F T +  I  +F     ++ + +  DK +    GFC+ 
Sbjct:    27 GSRKQKELPTEPPFTAYVGNLPFNTVQGDIDAIFKDLS-VRSVRLVRDKETDKFKGFCYV 85

Query:   113 LFYSREDTEDAVKYISGTILDDRPIRVDFDWG 144
              F   E  ++A+ Y  G +L DR +RVD   G
Sbjct:    86 EFDEVESLKEALTY-DGALLGDRSLRVDIAEG 116


>TAIR|locus:2036520 [details] [associations]
            symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
            "RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
            "response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
            GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
            EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
            RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
            UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
            PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
            EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
            TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
            ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
        Length = 292

 Score = 110 (43.8 bits), Expect = 0.00036, P = 0.00036
 Identities = 23/73 (31%), Positives = 42/73 (57%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG +S+  TE Q+   F R G+I +  + + +++  P GF F  F  R   +DA+K++
Sbjct:    14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73

Query:   128 SGTILDDRPIRVD 140
              G  L ++ I V+
Sbjct:    74 HGRELGNKVISVN 86


>UNIPROTKB|Q5ZLS0 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
            EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
            UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
            Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
            NextBio:20824917 Uniprot:Q5ZLS0
        Length = 475

 Score = 113 (44.8 bits), Expect = 0.00036, P = 0.00036
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>UNIPROTKB|G4MY43 [details] [associations]
            symbol:MGG_01268 "Nuclear localization sequence binding
            protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
            ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
            KEGG:mgr:MGG_01268 Uniprot:G4MY43
        Length = 486

 Score = 113 (44.8 bits), Expect = 0.00037, P = 0.00037
 Identities = 23/77 (29%), Positives = 42/77 (54%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             S T++VGN+ F   E+ +   FS   E+K + +  ++ S    GF +  F S ED + A 
Sbjct:   341 SDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAF 400

Query:   125 KYISGTILDDRPIRVDF 141
             + ++G  ++ R  R+D+
Sbjct:   401 EQLNGQSINGRNCRLDY 417


>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
            symbol:PF13_0122 "cyclophilin, putative"
            species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
            activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
            GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
            EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
            EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
            Uniprot:C0H5C7
        Length = 125

 Score = 91 (37.1 bits), Expect = 0.00039, P = 0.00039
 Identities = 20/78 (25%), Positives = 43/78 (55%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A+  ++VG +     E+ +Y++FS  G+I+ I + L+  +K   GF F  +   +D + A
Sbjct:     6 ATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHA 65

Query:   124 VKYISGTILDDRPIRVDF 141
             +  ++   L+ + I V++
Sbjct:    66 LYNMNNFELNGKRIHVNY 83


>UNIPROTKB|F2Z2U1 [details] [associations]
            symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
            family 1 member E" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
            HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
            IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
            Ensembl:ENST00000361046 Ensembl:ENST00000382639
            Ensembl:ENST00000382653 Uniprot:F2Z2U1
        Length = 81

 Score = 91 (37.1 bits), Expect = 0.00039, P = 0.00039
 Identities = 18/67 (26%), Positives = 40/67 (59%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             +++G ++  T E+ +  +F + G I ++++  D+ SK+  GF F  F +  D ++A K +
Sbjct:    10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSR-GFAFITFENPADAKNAAKDM 68

Query:   128 SGTILDD 134
             +G ++ D
Sbjct:    69 NGKMMVD 75


>UNIPROTKB|K7GMF5 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
        Length = 80

 Score = 91 (37.1 bits), Expect = 0.00039, P = 0.00039
 Identities = 16/65 (24%), Positives = 37/65 (56%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             +++G ++  T E+ +  +F + G I ++++  D+ +    GF F  F S  D +DA + +
Sbjct:    12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71

Query:   128 SGTIL 132
             +G ++
Sbjct:    72 NGKMM 76


>UNIPROTKB|C0H5C7 [details] [associations]
            symbol:PF13_0122 "RRM containing cyclophilin" species:36329
            "Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
            isomerization" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
            activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
            GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
            EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
            EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
            Uniprot:C0H5C7
        Length = 125

 Score = 91 (37.1 bits), Expect = 0.00039, P = 0.00039
 Identities = 20/78 (25%), Positives = 43/78 (55%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A+  ++VG +     E+ +Y++FS  G+I+ I + L+  +K   GF F  +   +D + A
Sbjct:     6 ATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHA 65

Query:   124 VKYISGTILDDRPIRVDF 141
             +  ++   L+ + I V++
Sbjct:    66 LYNMNNFELNGKRIHVNY 83


>UNIPROTKB|F1SD01 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
            RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
            Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
            Uniprot:F1SD01
        Length = 615

 Score = 114 (45.2 bits), Expect = 0.00040, P = 0.00040
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>WB|WBGene00017140 [details] [associations]
            symbol:EEED8.12 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
            EMBL:FO081042 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
            PIR:T15923 RefSeq:NP_495021.1 ProteinModelPortal:Q09301 SMR:Q09301
            IntAct:Q09301 STRING:Q09301 EnsemblMetazoa:EEED8.12 GeneID:173922
            KEGG:cel:CELE_EEED8.12 UCSC:EEED8.12 CTD:173922 WormBase:EEED8.12
            InParanoid:Q09301 OMA:HESIFRD NextBio:881677 Uniprot:Q09301
        Length = 197

 Score = 106 (42.4 bits), Expect = 0.00040, P = 0.00040
 Identities = 32/114 (28%), Positives = 61/114 (53%)

Query:    29 ELSAMASLFKD-QRKLSAYRDRR--FPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYEL 85
             E+ A +++ +  Q K++   +     P T+EE ++A+ A + V++GN+ F +T E++ E 
Sbjct:    23 EIEAESAILEQIQNKMAKNLESAAYVPPTEEE-QKAIDAKS-VFIGNVDFNSTIEEVEEH 80

Query:    86 FSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139
             F   G I +  +  DK +K    F +  F      E+A+  ++G++   RPI V
Sbjct:    81 FKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENAL-VMNGSLFRSRPIVV 133


>UNIPROTKB|Q9H0L4 [details] [associations]
            symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
            variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
            eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
            EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
            RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
            SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
            PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
            PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
            Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
            CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
            MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
            InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
            NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
            GermOnline:ENSG00000177613 Uniprot:Q9H0L4
        Length = 616

 Score = 114 (45.2 bits), Expect = 0.00040, P = 0.00040
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>UNIPROTKB|J9NX69 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
            Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
        Length = 509

 Score = 113 (44.8 bits), Expect = 0.00040, P = 0.00040
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>RGD|1310026 [details] [associations]
            symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
            2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
            ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
            Uniprot:B5DFH8
        Length = 629

 Score = 114 (45.2 bits), Expect = 0.00041, P = 0.00041
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>FB|FBgn0030479 [details] [associations]
            symbol:Rbp1-like "Rbp1-like" species:7227 "Drosophila
            melanogaster" [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
            [GO:0006376 "mRNA splice site selection" evidence=ISS] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IMP]
            [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0071011 GO:GO:0006376 HSSP:P52298
            GeneTree:ENSGT00700000104452 OrthoDB:EOG4CNP7N eggNOG:NOG315521
            EMBL:AY113490 RefSeq:NP_572880.2 UniGene:Dm.14416 SMR:Q9VYD8
            STRING:Q9VYD8 EnsemblMetazoa:FBtr0073790 GeneID:32293
            KEGG:dme:Dmel_CG1987 UCSC:CG1987-RA CTD:32293 FlyBase:FBgn0030479
            InParanoid:Q9VYD8 OMA:IDGAHET ChiTaRS:Rbp1-like GenomeRNAi:32293
            NextBio:777789 Uniprot:Q9VYD8
        Length = 158

 Score = 102 (41.0 bits), Expect = 0.00041, P = 0.00041
 Identities = 25/77 (32%), Positives = 39/77 (50%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             VYVGN+    ++ +I   FS+ G ++ + +     ++ P GF F  F  R D EDA + +
Sbjct:    13 VYVGNLGSSASKYEIENAFSKYGPLRNVWV-----ARNPPGFAFVEFEDRRDAEDATRGL 67

Query:   128 SGTILDDRPIRVDFDWG 144
              GT      IRV+   G
Sbjct:    68 DGTRCCGTRIRVEMSSG 84


>UNIPROTKB|G3MZ78 [details] [associations]
            symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
            EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
        Length = 632

 Score = 114 (45.2 bits), Expect = 0.00041, P = 0.00041
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>MGI|MGI:1932622 [details] [associations]
            symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
            subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
            polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
            eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
            OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
            EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
            RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
            SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
            REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
            Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
            UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
            Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
        Length = 632

 Score = 114 (45.2 bits), Expect = 0.00041, P = 0.00041
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>DICTYBASE|DDB_G0277371 [details] [associations]
            symbol:pabpn1 "polyadenylate-binding protein 2"
            species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008143 "poly(A)
            RNA binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0003723
            "RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0277371 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
            GenomeReviews:CM000151_GR EMBL:AAFI02000019 eggNOG:NOG238057
            GO:GO:0008143 KO:K14396 HSSP:P33240 RefSeq:XP_642788.1
            ProteinModelPortal:Q54ZS8 SMR:Q54ZS8 STRING:Q54ZS8
            EnsemblProtists:DDB0233678 GeneID:8620981 KEGG:ddi:DDB_G0277371
            OMA:FETEGQA Uniprot:Q54ZS8
        Length = 222

 Score = 107 (42.7 bits), Expect = 0.00043, P = 0.00043
 Identities = 21/75 (28%), Positives = 43/75 (57%)

Query:    65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124
             S +VYVGN+ + +T +QI   F   G + +I +  DK +  P G C+  F ++E   +A+
Sbjct:   100 SRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAM 159

Query:   125 KYISGTILDDRPIRV 139
               ++ +  ++R +++
Sbjct:   160 A-LNDSFFNERQLKI 173


>UNIPROTKB|A7MBG9 [details] [associations]
            symbol:WBSCR1 "WBSCR1 protein" species:9913 "Bos taurus"
            [GO:0048589 "developmental growth" evidence=IEA] [GO:0019953
            "sexual reproduction" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00530000063406 IPI:IPI00691331
            UniGene:Bt.57927 UniGene:Bt.89526 HOVERGEN:HBG018193
            EMBL:DAAA02058194 EMBL:BC151552 SMR:A7MBG9
            Ensembl:ENSBTAT00000064159 OMA:PNMDFRE Uniprot:A7MBG9
        Length = 222

 Score = 107 (42.7 bits), Expect = 0.00043, P = 0.00043
 Identities = 26/78 (33%), Positives = 41/78 (52%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             T YVGN+ F T +  I  +F     I+ + +  DK++    GFC+  F   +  ++A+ Y
Sbjct:    43 TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTY 101

Query:   127 ISGTILDDRPIRVDFDWG 144
               G +L DR +RVD   G
Sbjct:   102 -DGALLGDRSLRVDIAEG 118


>UNIPROTKB|F1S1L9 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
            Uniprot:F1S1L9
        Length = 551

 Score = 113 (44.8 bits), Expect = 0.00045, P = 0.00045
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>UNIPROTKB|K7GQE7 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
            EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
        Length = 555

 Score = 113 (44.8 bits), Expect = 0.00045, P = 0.00045
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>UNIPROTKB|Q1JPH6 [details] [associations]
            symbol:EIF4H "Eukaryotic translation initiation factor 4H"
            species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
            cytoplasm" evidence=IEA] [GO:0048589 "developmental growth"
            evidence=IEA] [GO:0019953 "sexual reproduction" evidence=IEA]
            [GO:0003743 "translation initiation factor activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0048471 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003743
            EMBL:BT025377 EMBL:BT030478 IPI:IPI00691331 RefSeq:NP_001069220.1
            UniGene:Bt.57927 UniGene:Bt.89526 ProteinModelPortal:Q1JPH6
            SMR:Q1JPH6 PRIDE:Q1JPH6 GeneID:517409 KEGG:bta:517409 CTD:7458
            HOVERGEN:HBG018193 NextBio:20872431 ArrayExpress:Q1JPH6
            Uniprot:Q1JPH6
        Length = 228

 Score = 107 (42.7 bits), Expect = 0.00047, P = 0.00047
 Identities = 26/78 (33%), Positives = 41/78 (52%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             T YVGN+ F T +  I  +F     I+ + +  DK++    GFC+  F   +  ++A+ Y
Sbjct:    43 TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTY 101

Query:   127 ISGTILDDRPIRVDFDWG 144
               G +L DR +RVD   G
Sbjct:   102 -DGALLGDRSLRVDIAEG 118


>UNIPROTKB|I3L594 [details] [associations]
            symbol:EIF4H "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00530000063406 CTD:7458 EMBL:FP340223
            RefSeq:NP_001230377.1 UniGene:Ssc.54702 Ensembl:ENSSSCT00000029656
            GeneID:100627717 KEGG:ssc:100627717 Uniprot:I3L594
        Length = 228

 Score = 107 (42.7 bits), Expect = 0.00047, P = 0.00047
 Identities = 26/78 (33%), Positives = 41/78 (52%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             T YVGN+ F T +  I  +F     I+ + +  DK++    GFC+  F   +  ++A+ Y
Sbjct:    43 TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTY 101

Query:   127 ISGTILDDRPIRVDFDWG 144
               G +L DR +RVD   G
Sbjct:   102 -DGALLGDRSLRVDIAEG 118


>UNIPROTKB|Q8HXM1 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
            [GO:0005847 "mRNA cleavage and polyadenylation specificity factor
            complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
            UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
            SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
            CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            Uniprot:Q8HXM1
        Length = 572

 Score = 113 (44.8 bits), Expect = 0.00047, P = 0.00047
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>UNIPROTKB|K7GS58 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
            EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
            Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
        Length = 572

 Score = 113 (44.8 bits), Expect = 0.00047, P = 0.00047
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>TAIR|locus:2019622 [details] [associations]
            symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
            "ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
            EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
            IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
            ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
            EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
            GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
            ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
        Length = 289

 Score = 109 (43.4 bits), Expect = 0.00047, P = 0.00047
 Identities = 25/79 (31%), Positives = 46/79 (58%)

Query:    63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTED 122
             ++S+ ++VG +S+ T E  + E FS+ GE+    + +D+ +    GF F  F S E+  +
Sbjct:    31 MSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90

Query:   123 AVKYISGTILDDRPIRVDF 141
             A++ + G  L  R IRV++
Sbjct:    91 AMQ-LDGQDLHGRRIRVNY 108


>UNIPROTKB|I3LQ36 [details] [associations]
            symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU210877
            Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
        Length = 161

 Score = 102 (41.0 bits), Expect = 0.00048, P = 0.00048
 Identities = 23/73 (31%), Positives = 41/73 (56%)

Query:    68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127
             ++VG ++F T E+ + + FS  G I ++++  D  ++   GF F  F + E   +A++  
Sbjct:     8 LFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRAT 67

Query:   128 SGTILDDRPIRVD 140
             +G  LD R I VD
Sbjct:    68 NGESLDGRQIHVD 80


>UNIPROTKB|E2RP40 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
            RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
            KEGG:cfa:492015 Uniprot:E2RP40
        Length = 577

 Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>UNIPROTKB|P33240 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=IDA]
            [GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
            polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
            evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=TAS]
            [GO:0006369 "termination of RNA polymerase II transcription"
            evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
            [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
            GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
            GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
            CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
            GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
            Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
            EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
            PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
            PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
            DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
            PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
            Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
            KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
            HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
            neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
            OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
            GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
            CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
            Uniprot:P33240
        Length = 577

 Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>UNIPROTKB|Q5RDA3 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=ISS]
            [GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
            ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
            KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
        Length = 577

 Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>MGI|MGI:1343054 [details] [associations]
            symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
            subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
            body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
            HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
            EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
            UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
            PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
            PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
            GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
            GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
            Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
            GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
        Length = 580

 Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>FB|FBgn0032822 [details] [associations]
            symbol:CG10466 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
            eggNOG:COG0724 KO:K13107 GeneTree:ENSGT00600000084414 HSSP:P33240
            RefSeq:NP_610003.1 UniGene:Dm.28254 ProteinModelPortal:Q9VIS0
            SMR:Q9VIS0 IntAct:Q9VIS0 MINT:MINT-903544 STRING:Q9VIS0
            PaxDb:Q9VIS0 PRIDE:Q9VIS0 EnsemblMetazoa:FBtr0081291
            EnsemblMetazoa:FBtr0332178 GeneID:35268 KEGG:dme:Dmel_CG10466
            UCSC:CG10466-RA FlyBase:FBgn0032822 InParanoid:Q9VIS0 OMA:YMEGCAP
            OrthoDB:EOG4ZPCBP PhylomeDB:Q9VIS0 GenomeRNAi:35268 NextBio:792713
            ArrayExpress:Q9VIS0 Bgee:Q9VIS0 Uniprot:Q9VIS0
        Length = 154

 Score = 101 (40.6 bits), Expect = 0.00048, P = 0.00048
 Identities = 28/103 (27%), Positives = 50/103 (48%)

Query:    38 KDQRKLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIM 97
             K+  KLS +  +   G ++ + +    S  ++V    +  TE  +  +FS+ GE+  I +
Sbjct:     8 KNVLKLSEHELQH--GGKKSWHDMYKDSAWIFVAGFPYTLTEGDLVCVFSQYGEVVNINL 65

Query:    98 GLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140
               D  +    GFCF  +  +  T  AV  ++G  + DR +RVD
Sbjct:    66 IRDSKTGKSKGFCFLCYEDQRSTVLAVDNLNGIKILDRTLRVD 108


>ASPGD|ASPL0000005213 [details] [associations]
            symbol:AN6074 species:162425 "Emericella nidulans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005849 "mRNA
            cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
            evidence=IEA] [GO:0046982 "protein heterodimerization activity"
            evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
            "mRNA polyadenylation" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            OMA:QLAYAIF ProteinModelPortal:C8V2S8 EnsemblFungi:CADANIAT00006943
            Uniprot:C8V2S8
        Length = 293

 Score = 109 (43.4 bits), Expect = 0.00049, P = 0.00049
 Identities = 24/78 (30%), Positives = 44/78 (56%)

Query:    64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123
             A  +V++GN+ +  TEEQ+ ++ S AG + K  + ++  +  P G+ FA F   +    A
Sbjct:     6 AGKSVFLGNIPYNLTEEQVKDILSTAGTVTKFRLMMNPETGKPKGYGFADFADADAAASA 65

Query:   124 VKYISGTILDDRPIRVDF 141
             V+ ++   +  R IRVD+
Sbjct:    66 VRNLNDYEIMGRKIRVDW 83


>UNIPROTKB|E1BVJ6 [details] [associations]
            symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
            Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
        Length = 592

 Score = 113 (44.8 bits), Expect = 0.00049, P = 0.00049
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>UNIPROTKB|F1MVI1 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
            GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
            IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
            Uniprot:F1MVI1
        Length = 592

 Score = 113 (44.8 bits), Expect = 0.00049, P = 0.00049
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>UNIPROTKB|I3LE23 [details] [associations]
            symbol:LOC100515986 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
            "mRNA cleavage and polyadenylation specificity factor complex"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
            KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
            Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
            EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
            Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
        Length = 592

 Score = 113 (44.8 bits), Expect = 0.00049, P = 0.00049
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90


>UNIPROTKB|E7EWR4 [details] [associations]
            symbol:CSTF2 "Cleavage stimulation factor subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
            InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
            EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
            ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
            UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
            Uniprot:E7EWR4
        Length = 597

 Score = 113 (44.8 bits), Expect = 0.00050, P = 0.00050
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126
             +V+VGN+ +  TEEQ+ ++FS  G +    +  D+ +  P G+ F  +  +E    A++ 
Sbjct:    17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76

Query:   127 ISGTILDDRPIRVD 140
             ++G     R +RVD
Sbjct:    77 LNGREFSGRALRVD 90

WARNING:  HSPs involving 52 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.139   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      216       202   0.00090  111 3  11 22  0.42    32
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  302
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.04u 0.20s 17.24t   Elapsed:  00:00:00
  Total cpu time:  17.05u 0.20s 17.25t   Elapsed:  00:00:00
  Start:  Sat May 11 14:28:47 2013   End:  Sat May 11 14:28:47 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with CBP20 CBP20 CBP20 AT5G44200	protein from Arabidopsis thaliana	2.5e-58
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 nuclear cap-binding protein subunit 2	gene from Dictyostelium discoideum	3.9e-37
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Bos taurus	6.3e-37
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Uncharacterized protein	protein from Canis lupus familiaris	6.3e-37
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Homo sapiens	6.3e-37
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Uncharacterized protein	protein from Sus scrofa	6.3e-37
BLAST match view associations BLAST with Ncbp2 Ncbp2 Ncbp2 nuclear cap binding protein subunit 2	protein from Mus musculus	6.3e-37
BLAST match view associations BLAST with Ncbp2 Ncbp2 Ncbp2 nuclear cap binding protein subunit 2	gene from Rattus norvegicus	6.3e-37
BLAST match view associations BLAST with Cbp20 Cbp20 Cbp20 cap binding protein 20	protein from Drosophila melanogaster	1.5e-35
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Taeniopygia guttata	1.5e-35
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Salmo salar	1.5e-35
BLAST match view associations BLAST with ncbp-2 ncbp-2 ncbp-2	gene from Caenorhabditis elegans	2.4e-35
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Gallus gallus	5.1e-35
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Esox lucius	5.1e-35
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Gallus gallus	6.5e-35
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 nuclear cap binding protein subunit 2	gene_product from Danio rerio	1.3e-34
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Xenopus laevis	2.8e-34
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Xenopus (Silurana) tropicalis	2.8e-34
BLAST match view associations BLAST with ncbp2 ncbp2 ncbp2 Nuclear cap-binding protein subunit 2	protein from Siniperca chuatsi	2.5e-33
BLAST match view associations BLAST with LOC100621482 LOC100621482 LOC100621482 Uncharacterized protein	protein from Sus scrofa	1.6e-31
BLAST match view associations BLAST with MGG_06296 MGG_06296 MGG_06296 Nuclear cap-binding protein subunit 2	protein from Magnaporthe oryzae 70-15	1.6e-31
BLAST match view associations BLAST with NCBP2L NCBP2L NCBP2L Uncharacterized protein	protein from Canis lupus familiaris	2.3e-30
BLAST match view associations BLAST with NCBP2L NCBP2L NCBP2L Uncharacterized protein	protein from Sus scrofa	1.6e-29
BLAST match view associations BLAST with NCBP2L NCBP2L NCBP2L Nuclear cap-binding protein subunit 2-like	protein from Homo sapiens	3.2e-26
BLAST match view associations BLAST with CBC2 CBC2 CBC2 Small subunit of the heterodimeric cap binding complex	gene from Saccharomyces cerevisiae	5.2e-26
BLAST match view associations BLAST with PFD0750w PFD0750w PFD0750w nuclear cap-binding protein, putative	gene from Plasmodium falciparum	4.6e-25
BLAST match view associations BLAST with PFD0750w PFD0750w PFD0750w Nuclear cap-binding protein, putative	protein from Plasmodium falciparum 3D7	4.6e-25
BLAST match view associations BLAST with orf19.763 orf19.763 orf19.763	gene_product from Candida albicans	2.3e-23
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 cDNA FLJ35897 fis, clone TESTI2009502, highly similar to Nuclear cap-binding protein subunit 2	protein from Homo sapiens	5.3e-17
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Homo sapiens	5.3e-17
BLAST match view associations BLAST with NCBP2 NCBP2 NCBP2 Nuclear cap-binding protein subunit 2	protein from Homo sapiens	1.3e-11
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	9.4e-11
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	1.1e-09
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	2.9e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	3.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	4.2e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	4.7e-09
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	4.7e-09
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	4.7e-09
BLAST match view associations BLAST with NSR1 NSR1 NSR1 Nucleolar protein that binds nuclear localization sequences	gene from Saccharomyces cerevisiae	6.5e-09
BLAST match view associations BLAST with R09B3.2 R09B3.2 R09B3.2	gene from Caenorhabditis elegans	7.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	9.7e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	9.7e-09
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	9.7e-09
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	1.2e-08
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	3.3e-08
BLAST match view associations BLAST with AT2G27330 AT2G27330 AT2G27330	protein from Arabidopsis thaliana	3.3e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	4.0e-08
BLAST match view associations BLAST with I3L8K8 I3L8K8 I3L8K8 Uncharacterized protein	protein from Sus scrofa	5.3e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	6.2e-08
BLAST match view associations BLAST with RBM7 RBM7 RBM7 RNA-binding protein 7	protein from Homo sapiens	7.2e-08
BLAST match view associations BLAST with I3L521 I3L521 I3L521 Uncharacterized protein	protein from Homo sapiens	7.2e-08
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	8.4e-08
BLAST match view associations BLAST with RBM7 RBM7 RBM7 RNA-binding protein 7	protein from Homo sapiens	9.4e-08
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich-splicing factor 2	protein from Homo sapiens	9.4e-08
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich-splicing factor 2	protein from Homo sapiens	9.4e-08
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	9.4e-08
BLAST match view associations BLAST with R09B3.3 R09B3.3 R09B3.3	gene from Caenorhabditis elegans	1.7e-07
BLAST match view associations BLAST with Y57G11A.5 Y57G11A.5 Y57G11A.5	gene from Caenorhabditis elegans	1.7e-07
BLAST match view associations BLAST with R09B3.3 R09B3.3 R09B3.3 Protein R09B3.3	protein from Caenorhabditis elegans	1.7e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	1.7e-07
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.4e-07
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	2.9e-07
BLAST match view associations BLAST with R06C1.4 R06C1.4 R06C1.4	gene from Caenorhabditis elegans	2.9e-07
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Uncharacterized protein	protein from Gallus gallus	3.4e-07
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	3.8e-07
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	3.8e-07
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	4.4e-07
BLAST match view associations BLAST with MGG_09885 MGG_09885 MGG_09885 Cleavage stimulation factor 64-kDa subunit	protein from Magnaporthe oryzae 70-15	4.6e-07
BLAST match view associations BLAST with Rbm11 Rbm11 Rbm11 RNA binding motif protein 11	protein from Mus musculus	5.7e-07
BLAST match view associations BLAST with Rbm11 Rbm11 Rbm11 RNA binding motif protein 11	gene from Rattus norvegicus	5.7e-07
BLAST match view associations BLAST with tra2b tra2b tra2b transformer 2 beta homolog (Drosophila)	gene_product from Danio rerio	7.0e-07
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Uncharacterized protein	protein from Gallus gallus	7.7e-07
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	8.5e-07
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	9.2e-07
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Transformer-2 protein homolog alpha	protein from Homo sapiens	9.3e-07
BLAST match view associations BLAST with TRA2A TRA2A TRA2A cDNA FLJ50689, highly similar to Transformer-2 protein homolog	protein from Homo sapiens	1.0e-06
BLAST match view associations BLAST with RBM11 RBM11 RBM11 Uncharacterized protein	protein from Bos taurus	1.2e-06
BLAST match view associations BLAST with rsp-4 rsp-4 rsp-4	gene from Caenorhabditis elegans	1.4e-06
BLAST match view associations BLAST with rsp-4 rsp-4 rsp-4 Probable splicing factor, arginine/serine-rich 4	protein from Caenorhabditis elegans	1.4e-06
BLAST match view associations BLAST with srsf2b srsf2b srsf2b serine/arginine-rich splicing factor 2b	gene_product from Danio rerio	1.5e-06
BLAST match view associations BLAST with orf19.1389 orf19.1389 orf19.1389	gene_product from Candida albicans	1.5e-06
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Uncharacterized protein	protein from Sus scrofa	1.8e-06
BLAST match view associations BLAST with RBM11 RBM11 RBM11 Splicing regulator RBM11	protein from Homo sapiens	1.8e-06
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Transformer-2 protein homolog beta	protein from Bos taurus	1.9e-06
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Uncharacterized protein	protein from Canis lupus familiaris	1.9e-06
BLAST match view associations BLAST with TRA2B TRA2B TRA2B Transformer-2 protein homolog beta	protein from Homo sapiens	1.9e-06
BLAST match view associations BLAST with Tra2b Tra2b Tra2b transformer 2 beta homolog (Drosophila)	protein from Mus musculus	1.9e-06
BLAST match view associations BLAST with Tra2b Tra2b Tra2b transformer 2 beta homolog (Drosophila)	gene from Rattus norvegicus	1.9e-06