Query 037453
Match_columns 216
No_of_seqs 281 out of 2458
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 12:26:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0121 Nuclear cap-binding pr 99.9 1.6E-26 3.5E-31 165.7 8.8 144 34-177 5-148 (153)
2 TIGR01659 sex-lethal sex-letha 99.9 8.1E-22 1.8E-26 168.6 12.4 126 62-212 104-229 (346)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 5E-21 1.1E-25 164.6 13.1 122 64-210 2-123 (352)
4 PLN03134 glycine-rich RNA-bind 99.9 1.8E-20 4E-25 141.7 14.0 85 63-147 32-116 (144)
5 TIGR01645 half-pint poly-U bin 99.8 9.2E-21 2E-25 170.8 12.4 137 59-211 101-239 (612)
6 TIGR01628 PABP-1234 polyadenyl 99.8 2.5E-19 5.3E-24 163.2 12.9 122 66-210 1-122 (562)
7 KOG0105 Alternative splicing f 99.8 2.4E-19 5.1E-24 136.7 9.8 122 63-189 4-135 (241)
8 TIGR01622 SF-CC1 splicing fact 99.8 6.1E-19 1.3E-23 156.8 12.7 135 62-210 86-220 (457)
9 KOG0145 RNA-binding protein EL 99.8 3.9E-19 8.4E-24 142.0 9.7 128 63-215 39-166 (360)
10 KOG0148 Apoptosis-promoting RN 99.8 3.2E-19 6.8E-24 143.1 8.4 137 64-212 61-200 (321)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.5E-17 3.2E-22 143.1 15.9 81 64-144 88-170 (352)
12 TIGR01628 PABP-1234 polyadenyl 99.8 2.5E-18 5.5E-23 156.6 10.2 140 63-210 176-319 (562)
13 TIGR01659 sex-lethal sex-letha 99.8 3.2E-17 6.9E-22 140.4 15.7 82 64-145 192-275 (346)
14 KOG0122 Translation initiation 99.8 3.3E-18 7.1E-23 135.5 8.4 83 63-145 187-269 (270)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 1.9E-17 4.2E-22 148.1 14.2 77 63-144 273-350 (481)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.7 3E-17 6.6E-22 147.7 15.2 146 64-210 294-453 (509)
17 PF00076 RRM_1: RNA recognitio 99.7 3.6E-17 7.8E-22 107.9 9.4 70 68-138 1-70 (70)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 6E-17 1.3E-21 145.0 12.8 130 64-212 1-132 (481)
19 KOG0131 Splicing factor 3b, su 99.7 1.7E-17 3.8E-22 126.1 7.8 119 63-205 7-125 (203)
20 KOG0144 RNA-binding protein CU 99.7 2E-17 4.3E-22 140.1 8.0 124 63-210 32-158 (510)
21 KOG0107 Alternative splicing f 99.7 8.5E-17 1.8E-21 121.7 9.7 80 64-148 9-88 (195)
22 TIGR01645 half-pint poly-U bin 99.7 3.3E-16 7.1E-21 141.5 15.0 83 64-146 203-285 (612)
23 TIGR01648 hnRNP-R-Q heterogene 99.7 1.4E-16 3.1E-21 143.5 11.8 108 64-203 57-165 (578)
24 TIGR01622 SF-CC1 splicing fact 99.7 1.7E-15 3.7E-20 134.7 17.2 80 64-143 185-264 (457)
25 TIGR01648 hnRNP-R-Q heterogene 99.7 1.2E-15 2.6E-20 137.5 15.3 79 62-148 230-310 (578)
26 KOG4207 Predicted splicing fac 99.7 1.8E-16 4E-21 122.8 8.4 82 62-143 10-91 (256)
27 KOG0149 Predicted RNA-binding 99.7 1.6E-16 3.5E-21 125.4 7.4 80 64-144 11-90 (247)
28 PF14259 RRM_6: RNA recognitio 99.7 1.2E-15 2.7E-20 101.0 9.6 70 68-138 1-70 (70)
29 KOG0148 Apoptosis-promoting RN 99.7 4E-16 8.6E-21 125.4 8.3 128 4-145 103-238 (321)
30 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1.8E-15 3.8E-20 136.2 12.4 139 61-211 171-330 (509)
31 PLN03120 nucleic acid binding 99.6 2.9E-15 6.3E-20 121.7 11.5 78 64-145 3-80 (260)
32 KOG0113 U1 small nuclear ribon 99.6 3.3E-15 7.2E-20 121.5 11.2 83 63-145 99-181 (335)
33 KOG0127 Nucleolar protein fibr 99.6 2.5E-15 5.5E-20 130.7 10.2 146 64-216 4-160 (678)
34 KOG0111 Cyclophilin-type pepti 99.6 7.5E-16 1.6E-20 120.5 5.1 84 63-146 8-91 (298)
35 KOG0117 Heterogeneous nuclear 99.6 7E-15 1.5E-19 125.3 11.1 112 63-205 81-193 (506)
36 KOG0130 RNA-binding protein RB 99.6 2.7E-15 5.9E-20 109.0 7.4 83 64-146 71-153 (170)
37 KOG0144 RNA-binding protein CU 99.6 2.8E-15 6E-20 127.2 8.5 85 63-148 122-209 (510)
38 KOG0126 Predicted RNA-binding 99.6 3.2E-16 6.9E-21 119.2 1.8 86 59-144 29-114 (219)
39 PLN03213 repressor of silencin 99.6 8E-15 1.7E-19 126.4 9.5 78 63-144 8-87 (759)
40 KOG0125 Ataxin 2-binding prote 99.6 4.5E-15 9.9E-20 122.1 7.5 84 60-145 91-174 (376)
41 KOG0145 RNA-binding protein EL 99.6 1.2E-14 2.5E-19 116.5 9.6 81 64-144 126-208 (360)
42 COG0724 RNA-binding proteins ( 99.6 8.5E-14 1.8E-18 113.6 14.9 80 65-144 115-194 (306)
43 smart00362 RRM_2 RNA recogniti 99.6 2.5E-14 5.5E-19 93.6 9.4 72 67-140 1-72 (72)
44 KOG0127 Nucleolar protein fibr 99.6 3.5E-14 7.7E-19 123.6 12.5 79 64-143 116-194 (678)
45 KOG0117 Heterogeneous nuclear 99.6 1.2E-14 2.7E-19 123.8 9.3 128 12-147 203-333 (506)
46 KOG0109 RNA-binding protein LA 99.6 1E-14 2.2E-19 118.4 8.1 111 66-211 3-113 (346)
47 smart00360 RRM RNA recognition 99.5 4.4E-14 9.5E-19 92.1 8.8 71 70-140 1-71 (71)
48 PLN03121 nucleic acid binding 99.5 4.7E-14 1E-18 113.0 10.3 77 64-144 4-80 (243)
49 KOG0124 Polypyrimidine tract-b 99.5 2.8E-15 6E-20 125.1 2.3 81 61-141 109-189 (544)
50 KOG0108 mRNA cleavage and poly 99.5 6.9E-14 1.5E-18 122.0 8.4 81 66-146 19-99 (435)
51 cd00590 RRM RRM (RNA recogniti 99.5 4.5E-13 9.8E-18 88.0 9.9 74 67-141 1-74 (74)
52 KOG4205 RNA-binding protein mu 99.5 6E-14 1.3E-18 117.6 6.8 121 64-204 5-125 (311)
53 KOG0114 Predicted RNA-binding 99.5 2.7E-13 5.9E-18 94.3 8.7 78 64-144 17-94 (124)
54 KOG0123 Polyadenylate-binding 99.5 2.1E-13 4.6E-18 117.6 9.7 106 66-207 2-107 (369)
55 KOG0146 RNA-binding protein ET 99.5 1.1E-13 2.4E-18 111.3 6.7 91 59-149 279-369 (371)
56 KOG0109 RNA-binding protein LA 99.4 6.6E-14 1.4E-18 113.7 4.0 118 2-145 33-150 (346)
57 smart00361 RRM_1 RNA recogniti 99.4 9.5E-13 2.1E-17 87.4 8.2 62 79-140 2-70 (70)
58 KOG0131 Splicing factor 3b, su 99.4 5.1E-13 1.1E-17 101.9 7.3 122 15-145 49-177 (203)
59 KOG0123 Polyadenylate-binding 99.4 1.3E-12 2.9E-17 112.8 10.2 126 65-210 76-201 (369)
60 KOG4206 Spliceosomal protein s 99.4 3.6E-12 7.8E-17 100.5 10.6 80 63-145 7-90 (221)
61 KOG0110 RNA-binding protein (R 99.4 2.1E-12 4.5E-17 115.7 10.3 132 64-211 514-648 (725)
62 PF13893 RRM_5: RNA recognitio 99.4 3.4E-12 7.4E-17 80.8 8.4 56 82-142 1-56 (56)
63 KOG0147 Transcriptional coacti 99.3 3.5E-12 7.5E-17 111.5 8.2 77 66-142 279-355 (549)
64 KOG0415 Predicted peptidyl pro 99.3 3.4E-12 7.3E-17 106.3 6.5 83 62-144 236-318 (479)
65 KOG0132 RNA polymerase II C-te 99.3 9.8E-12 2.1E-16 112.3 7.8 103 64-189 420-522 (894)
66 KOG0153 Predicted RNA-binding 99.3 1.5E-11 3.3E-16 102.2 8.2 130 8-144 166-302 (377)
67 KOG0106 Alternative splicing f 99.3 1E-11 2.2E-16 98.6 6.3 123 66-203 2-126 (216)
68 KOG4212 RNA-binding protein hn 99.2 2.4E-11 5.2E-16 103.8 8.4 79 65-144 44-123 (608)
69 KOG0110 RNA-binding protein (R 99.2 4.2E-12 9E-17 113.8 2.0 81 64-144 612-692 (725)
70 KOG4208 Nucleolar RNA-binding 99.2 5.3E-11 1.1E-15 92.7 7.7 83 63-145 47-130 (214)
71 KOG0124 Polypyrimidine tract-b 99.1 1.1E-10 2.5E-15 97.7 7.7 88 57-144 202-289 (544)
72 KOG0116 RasGAP SH3 binding pro 99.1 3.1E-10 6.8E-15 98.7 10.4 84 63-147 286-369 (419)
73 KOG0147 Transcriptional coacti 99.1 1.6E-11 3.5E-16 107.3 1.0 141 62-215 176-317 (549)
74 KOG0146 RNA-binding protein ET 99.1 2.2E-10 4.7E-15 92.5 5.4 83 64-147 18-103 (371)
75 KOG4205 RNA-binding protein mu 99.0 5.3E-10 1.1E-14 94.0 6.1 83 64-147 96-178 (311)
76 KOG4209 Splicing factor RNPS1, 99.0 1.7E-09 3.7E-14 87.7 8.6 84 61-145 97-180 (231)
77 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.9E-09 4.1E-14 95.0 8.5 82 64-145 404-485 (940)
78 KOG4212 RNA-binding protein hn 99.0 1.3E-09 2.7E-14 93.4 7.0 75 62-141 533-607 (608)
79 KOG4211 Splicing factor hnRNP- 99.0 5.5E-09 1.2E-13 90.7 10.6 119 62-198 7-125 (510)
80 KOG1190 Polypyrimidine tract-b 98.9 1.2E-08 2.6E-13 86.8 11.6 133 65-207 297-446 (492)
81 KOG0533 RRM motif-containing p 98.9 6.1E-09 1.3E-13 84.5 8.4 79 64-143 82-160 (243)
82 KOG1457 RNA binding protein (c 98.8 3.3E-08 7.1E-13 78.2 9.8 84 63-146 32-119 (284)
83 KOG1548 Transcription elongati 98.8 2.2E-08 4.7E-13 83.6 8.0 79 64-143 133-219 (382)
84 KOG4660 Protein Mei2, essentia 98.8 1.3E-08 2.7E-13 89.6 6.0 72 62-138 72-143 (549)
85 KOG0226 RNA-binding proteins [ 98.7 1.1E-08 2.4E-13 82.1 4.3 81 63-143 188-268 (290)
86 PF04059 RRM_2: RNA recognitio 98.7 1.4E-07 3E-12 66.2 9.0 78 66-143 2-85 (97)
87 KOG0120 Splicing factor U2AF, 98.7 4.9E-08 1.1E-12 86.4 6.9 147 63-211 287-444 (500)
88 KOG4454 RNA binding protein (R 98.6 2.7E-08 5.8E-13 78.4 1.9 79 64-144 8-86 (267)
89 KOG0151 Predicted splicing reg 98.5 1.4E-07 3E-12 85.3 6.4 82 63-144 172-256 (877)
90 KOG0106 Alternative splicing f 98.3 4E-07 8.6E-12 72.6 3.5 72 63-142 97-168 (216)
91 KOG1995 Conserved Zn-finger pr 98.3 2E-06 4.4E-11 72.4 6.1 83 62-144 63-153 (351)
92 PF11608 Limkain-b1: Limkain b 98.2 5.6E-06 1.2E-10 55.9 6.9 68 66-143 3-75 (90)
93 KOG4210 Nuclear localization s 98.2 1.2E-06 2.5E-11 73.4 4.5 83 64-147 183-266 (285)
94 KOG4211 Splicing factor hnRNP- 98.2 3.6E-06 7.9E-11 73.5 7.2 77 64-142 102-179 (510)
95 KOG1457 RNA binding protein (c 98.1 3.1E-06 6.8E-11 67.1 4.1 66 64-133 209-274 (284)
96 PF08777 RRM_3: RNA binding mo 98.0 1.6E-05 3.4E-10 56.8 5.7 70 66-141 2-76 (105)
97 KOG0129 Predicted RNA-binding 97.9 7.6E-05 1.7E-09 65.8 9.9 127 64-203 258-398 (520)
98 KOG4206 Spliceosomal protein s 97.9 6.7E-05 1.5E-09 59.7 7.6 77 62-143 143-220 (221)
99 KOG4307 RNA binding protein RB 97.7 0.00011 2.4E-09 66.9 7.6 76 66-141 868-943 (944)
100 KOG2314 Translation initiation 97.7 0.0001 2.2E-09 65.6 7.2 77 64-141 57-140 (698)
101 COG5175 MOT2 Transcriptional r 97.7 9.7E-05 2.1E-09 62.0 6.6 78 65-142 114-200 (480)
102 KOG3152 TBP-binding protein, a 97.7 3.5E-05 7.7E-10 62.3 3.8 73 64-136 73-157 (278)
103 KOG4849 mRNA cleavage factor I 97.7 3.5E-05 7.6E-10 64.9 3.8 75 66-140 81-157 (498)
104 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00023 4.9E-09 44.3 5.1 52 66-124 2-53 (53)
105 KOG0120 Splicing factor U2AF, 97.5 0.00025 5.4E-09 63.2 6.7 143 59-215 169-328 (500)
106 KOG1190 Polypyrimidine tract-b 97.5 0.00028 6.2E-09 60.6 6.7 78 63-144 412-490 (492)
107 KOG1855 Predicted RNA-binding 97.5 4.2E-05 9.2E-10 65.9 1.3 69 63-131 229-310 (484)
108 KOG0129 Predicted RNA-binding 97.5 0.00038 8.1E-09 61.5 7.0 66 61-126 366-432 (520)
109 KOG1548 Transcription elongati 97.4 0.00079 1.7E-08 56.8 8.0 79 62-144 262-351 (382)
110 KOG2193 IGF-II mRNA-binding pr 97.4 0.0001 2.2E-09 63.6 2.6 111 66-210 2-114 (584)
111 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0013 2.8E-08 46.5 7.0 77 64-142 5-89 (100)
112 KOG0105 Alternative splicing f 97.3 0.0031 6.8E-08 49.0 9.5 64 63-133 113-176 (241)
113 KOG1365 RNA-binding protein Fu 97.3 0.00046 9.9E-09 59.0 5.0 79 64-143 279-360 (508)
114 PF08952 DUF1866: Domain of un 97.2 0.0018 4E-08 48.5 7.4 74 62-144 24-106 (146)
115 KOG0128 RNA-binding protein SA 97.2 2.2E-05 4.8E-10 72.7 -3.9 71 63-134 665-735 (881)
116 KOG0128 RNA-binding protein SA 97.1 0.00039 8.4E-09 64.7 3.6 79 65-144 736-814 (881)
117 KOG1456 Heterogeneous nuclear 97.1 0.003 6.5E-08 54.0 8.1 77 62-143 284-361 (494)
118 KOG1365 RNA-binding protein Fu 97.1 0.0014 2.9E-08 56.2 5.9 76 65-142 161-240 (508)
119 KOG0112 Large RNA-binding prot 96.9 0.00034 7.3E-09 65.4 1.5 118 61-206 368-485 (975)
120 KOG1456 Heterogeneous nuclear 96.9 0.0079 1.7E-07 51.5 9.4 78 63-145 118-199 (494)
121 KOG0112 Large RNA-binding prot 96.8 0.0017 3.7E-08 60.9 4.8 76 63-144 453-530 (975)
122 KOG1996 mRNA splicing factor [ 96.7 0.0066 1.4E-07 50.4 6.8 63 80-142 301-364 (378)
123 KOG4210 Nuclear localization s 96.6 0.0029 6.4E-08 53.1 4.6 79 64-143 87-166 (285)
124 KOG2202 U2 snRNP splicing fact 96.6 0.0011 2.4E-08 53.8 1.9 61 81-142 84-145 (260)
125 PF10309 DUF2414: Protein of u 96.4 0.024 5.3E-07 36.3 6.8 55 65-127 5-62 (62)
126 KOG0115 RNA-binding protein p5 96.0 0.0099 2.1E-07 48.4 4.1 77 65-142 31-111 (275)
127 PF08675 RNA_bind: RNA binding 95.8 0.037 8E-07 37.5 5.7 55 65-128 9-63 (87)
128 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.03 6.5E-07 43.7 5.9 80 64-143 6-96 (176)
129 KOG4307 RNA binding protein RB 95.6 0.0097 2.1E-07 54.7 3.1 78 64-142 433-511 (944)
130 KOG4676 Splicing factor, argin 95.6 0.024 5.3E-07 48.8 5.3 77 65-142 7-86 (479)
131 KOG2068 MOT2 transcription fac 95.6 0.0054 1.2E-07 51.7 1.2 78 65-142 77-160 (327)
132 KOG2416 Acinus (induces apopto 95.3 0.022 4.7E-07 51.6 4.1 75 63-143 442-520 (718)
133 PF15023 DUF4523: Protein of u 95.2 0.12 2.7E-06 38.6 7.1 74 62-143 83-160 (166)
134 PF04847 Calcipressin: Calcipr 94.7 0.13 2.7E-06 40.5 6.6 61 78-144 8-70 (184)
135 PF03880 DbpA: DbpA RNA bindin 94.6 0.25 5.4E-06 32.7 7.0 59 75-142 11-74 (74)
136 PF07576 BRAP2: BRCA1-associat 93.7 0.58 1.2E-05 33.6 7.7 67 66-134 14-81 (110)
137 KOG2135 Proteins containing th 92.8 0.082 1.8E-06 46.7 2.5 74 64-144 371-445 (526)
138 PF11767 SET_assoc: Histone ly 92.1 1.2 2.6E-05 28.9 6.8 55 76-139 11-65 (66)
139 KOG2591 c-Mpl binding protein, 92.0 0.28 6.1E-06 44.3 4.9 72 63-141 173-248 (684)
140 KOG2253 U1 snRNP complex, subu 91.8 0.083 1.8E-06 48.4 1.5 73 61-142 36-108 (668)
141 KOG4660 Protein Mei2, essentia 91.6 0.38 8.3E-06 43.3 5.4 80 64-143 387-471 (549)
142 KOG4574 RNA-binding protein (c 91.6 0.15 3.2E-06 48.2 2.9 74 65-144 298-373 (1007)
143 KOG4285 Mitotic phosphoprotein 90.0 1.4 3.1E-05 37.0 6.9 70 65-142 197-267 (350)
144 PF00076 RRM_1: RNA recognitio 88.8 0.12 2.7E-06 32.8 -0.1 30 174-210 3-32 (70)
145 KOG0804 Cytoplasmic Zn-finger 88.8 1.4 3E-05 39.0 6.3 69 64-134 73-142 (493)
146 KOG2193 IGF-II mRNA-binding pr 88.5 0.063 1.4E-06 46.9 -2.0 74 65-142 80-154 (584)
147 PLN03134 glycine-rich RNA-bind 87.0 0.63 1.4E-05 35.0 2.8 33 172-211 37-69 (144)
148 KOG2318 Uncharacterized conser 82.5 4.8 0.00011 36.8 6.7 80 62-141 171-304 (650)
149 KOG4410 5-formyltetrahydrofola 76.2 3.9 8.4E-05 34.3 3.8 50 64-119 329-379 (396)
150 KOG0115 RNA-binding protein p5 76.1 3.4 7.4E-05 34.0 3.4 57 117-205 4-60 (275)
151 smart00362 RRM_2 RNA recogniti 75.0 1.6 3.5E-05 26.9 1.1 31 173-210 3-33 (72)
152 KOG4676 Splicing factor, argin 72.0 0.57 1.2E-05 40.7 -2.0 64 65-133 151-214 (479)
153 PF07530 PRE_C2HC: Associated 71.5 11 0.00024 24.5 4.4 61 80-143 2-63 (68)
154 KOG0153 Predicted RNA-binding 70.7 2.2 4.7E-05 36.6 1.2 34 182-216 235-268 (377)
155 KOG4454 RNA binding protein (R 70.4 1.6 3.4E-05 35.2 0.3 72 64-136 79-154 (267)
156 smart00596 PRE_C2HC PRE_C2HC d 69.2 12 0.00025 24.5 4.1 61 80-143 2-63 (69)
157 PF14259 RRM_6: RNA recognitio 68.3 2.1 4.5E-05 27.2 0.5 31 174-211 3-33 (70)
158 KOG0113 U1 small nuclear ribon 67.0 3.4 7.3E-05 34.8 1.5 31 185-216 111-141 (335)
159 KOG4483 Uncharacterized conser 67.0 16 0.00034 32.2 5.6 55 64-125 390-445 (528)
160 KOG0132 RNA polymerase II C-te 63.8 3.3 7.2E-05 39.2 1.0 32 184-216 430-461 (894)
161 PRK11634 ATP-dependent RNA hel 63.8 69 0.0015 30.2 9.7 69 66-143 487-561 (629)
162 KOG0114 Predicted RNA-binding 62.8 4.7 0.0001 28.7 1.4 35 172-213 21-55 (124)
163 KOG0122 Translation initiation 61.2 9.9 0.00022 31.2 3.2 36 172-214 192-227 (270)
164 KOG0121 Nuclear cap-binding pr 60.9 4.8 0.0001 29.7 1.2 29 187-216 48-80 (153)
165 KOG0125 Ataxin 2-binding prote 59.4 8.4 0.00018 32.9 2.6 33 172-211 99-131 (376)
166 PF15513 DUF4651: Domain of un 57.7 26 0.00056 22.3 4.0 18 80-97 9-26 (62)
167 KOG0126 Predicted RNA-binding 56.0 2.8 6.1E-05 32.8 -0.7 48 163-215 27-74 (219)
168 COG0724 RNA-binding proteins ( 55.9 19 0.00042 28.4 4.2 62 62-123 222-283 (306)
169 PF03468 XS: XS domain; Inter 55.1 15 0.00033 26.5 3.0 57 66-125 9-75 (116)
170 KOG0226 RNA-binding proteins [ 51.4 12 0.00025 31.0 2.1 118 65-202 96-216 (290)
171 KOG4019 Calcineurin-mediated s 48.7 17 0.00036 28.5 2.5 75 64-144 9-89 (193)
172 KOG2295 C2H2 Zn-finger protein 42.8 5.4 0.00012 36.4 -1.1 75 64-138 230-304 (648)
173 PF02714 DUF221: Domain of unk 42.2 32 0.00068 29.1 3.5 32 110-143 1-32 (325)
174 PRK14548 50S ribosomal protein 40.6 1.1E+02 0.0025 20.6 5.6 55 68-125 23-79 (84)
175 PF14111 DUF4283: Domain of un 40.3 47 0.001 24.4 3.9 119 64-209 14-138 (153)
176 PF03439 Spt5-NGN: Early trans 36.4 68 0.0015 21.5 3.8 25 106-130 43-67 (84)
177 PF10567 Nab6_mRNP_bdg: RNA-re 36.2 62 0.0013 27.4 4.1 78 65-142 15-105 (309)
178 KOG0130 RNA-binding protein RB 35.4 25 0.00054 26.3 1.6 32 184-216 81-112 (170)
179 COG5193 LHP1 La protein, small 33.0 21 0.00045 31.4 1.0 61 65-125 174-244 (438)
180 TIGR03636 L23_arch archaeal ri 32.1 1.6E+02 0.0034 19.6 5.7 56 67-125 15-72 (77)
181 PF09707 Cas_Cas2CT1978: CRISP 31.7 1E+02 0.0022 21.1 4.0 49 64-115 24-72 (86)
182 KOG2891 Surface glycoprotein [ 31.6 50 0.0011 27.8 2.9 66 65-130 149-245 (445)
183 PF11411 DNA_ligase_IV: DNA li 31.1 38 0.00083 19.1 1.5 16 75-90 19-34 (36)
184 PF07292 NID: Nmi/IFP 35 domai 30.3 32 0.00069 23.6 1.3 23 64-86 51-73 (88)
185 PF11823 DUF3343: Protein of u 29.8 72 0.0016 20.6 3.0 26 108-133 2-27 (73)
186 KOG1295 Nonsense-mediated deca 29.3 91 0.002 27.3 4.2 69 64-132 6-77 (376)
187 KOG4008 rRNA processing protei 24.7 63 0.0014 26.5 2.3 31 63-93 38-68 (261)
188 KOG4365 Uncharacterized conser 23.3 13 0.00029 33.0 -1.8 78 66-144 4-81 (572)
189 PRK11558 putative ssRNA endonu 22.8 1.4E+02 0.003 20.9 3.4 50 64-116 26-75 (97)
190 KOG0151 Predicted splicing reg 22.6 91 0.002 29.8 3.2 33 170-209 175-207 (877)
191 COG0030 KsgA Dimethyladenosine 21.6 99 0.0021 25.7 3.0 33 65-97 95-127 (259)
192 PRK11901 hypothetical protein; 20.7 2.3E+02 0.005 24.4 5.0 60 65-129 245-306 (327)
193 KOG4661 Hsp27-ERE-TATA-binding 20.5 1.3E+02 0.0028 28.1 3.6 22 191-212 420-441 (940)
No 1
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.6e-26 Score=165.73 Aligned_cols=144 Identities=69% Similarity=1.132 Sum_probs=135.8
Q ss_pred HhhhhcccccchhhcCCCCCChhHHHHhcCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEE
Q 037453 34 ASLFKDQRKLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFAL 113 (216)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~ 113 (216)
+..+...+..+.++++++..+.++..++...+++||||||++.++|++|.++|+.+|+|..|.|-.|+.+..+-|||||+
T Consensus 5 ~~~~~~~~~~s~Yr~~~f~gt~~e~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVe 84 (153)
T KOG0121|consen 5 ARSFKRLDELSAYRDRRFRGTDEEQLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVE 84 (153)
T ss_pred hhhhcCccchhHHHHHHhcCchHHHHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEE
Confidence 44556667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHHhCCceeCCeeEEEEeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccC
Q 037453 114 FYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTL 177 (216)
Q Consensus 114 F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 177 (216)
|.+.++|+.|+..++|..|+.++|++.+..+...+++++||.+||+.+++++.++++++..++.
T Consensus 85 yy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQyGRG~sGGqVrde~r~d~D~~rggy~k 148 (153)
T KOG0121|consen 85 YYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQYGRGKSGGQVRDEYRTDYDPGRGGYGK 148 (153)
T ss_pred EecchhHHHHHHHhccCcccccceeeeccccchhhhhhcCCCCCCeechhhhhhcCcccCccch
Confidence 9999999999999999999999999999999999999999999999999999999999887753
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.87 E-value=8.1e-22 Score=168.64 Aligned_cols=126 Identities=17% Similarity=0.266 Sum_probs=106.9
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
....++|||+|||+++|+++|+++|+.||.|++|+|++|+.+++++|||||+|.++++|++||+.||+..+.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCcccccccc
Q 037453 142 DWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHL 212 (216)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~ 212 (216)
+.+.... . ....+.|.||+.. .++ ++|+++|++||.+..++++...
T Consensus 184 a~p~~~~---------------~---~~~~lfV~nLp~~------vte-e~L~~~F~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 184 ARPGGES---------------I---KDTNLYVTNLPRT------ITD-DQLDTIFGKYGQIVQKNILRDK 229 (346)
T ss_pred ccccccc---------------c---ccceeEEeCCCCc------ccH-HHHHHHHHhcCCEEEEEEeecC
Confidence 8642110 0 0123566666654 777 8999999999999887776543
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.86 E-value=5e-21 Score=164.59 Aligned_cols=122 Identities=23% Similarity=0.339 Sum_probs=103.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
+.++|||+|||+.+++++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|++||+.|||..|.|+.|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 144 GFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.... . ....+.+.|+|.. .++ ++|+++|.+||.+....++.
T Consensus 82 ~~~~~---------------~---~~~~l~v~~l~~~------~~~-~~l~~~f~~~G~i~~~~~~~ 123 (352)
T TIGR01661 82 PSSDS---------------I---KGANLYVSGLPKT------MTQ-HELESIFSPFGQIITSRILS 123 (352)
T ss_pred ccccc---------------c---ccceEEECCcccc------CCH-HHHHHHHhccCCEEEEEEEe
Confidence 43211 0 0123566666655 677 88999999999987655543
No 4
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=1.8e-20 Score=141.70 Aligned_cols=85 Identities=24% Similarity=0.404 Sum_probs=80.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+|+++|+++|++||.|.++.++.|+.|++++|||||+|.+.++|++||+.||+..|+|++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76544
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.85 E-value=9.2e-21 Score=170.78 Aligned_cols=137 Identities=23% Similarity=0.309 Sum_probs=106.4
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 037453 59 EEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIR 138 (216)
Q Consensus 59 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 138 (216)
.+.....++|||+|||+.+++++|+++|++||.|.+|+++.|+.|++++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 101 ~~a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~Ik 180 (612)
T TIGR01645 101 QQALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK 180 (612)
T ss_pred hhhhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceee
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 139 VDFDWGFQDGRQWGRGRSGGQVRDEYRTD--YDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 139 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
|........... ..+..... ....+.|.||+.. .++ ++|+++|+.||.+...+.+.+
T Consensus 181 V~rp~~~p~a~~---------~~~~~~~~~~~~~rLfVgnLp~~------vte-edLk~lFs~FG~I~svrl~~D 239 (612)
T TIGR01645 181 VGRPSNMPQAQP---------IIDMVQEEAKKFNRIYVASVHPD------LSE-TDIKSVFEAFGEIVKCQLARA 239 (612)
T ss_pred eccccccccccc---------ccccccccccccceEEeecCCCC------CCH-HHHHHHHhhcCCeeEEEEEec
Confidence 986532211110 00000000 1112455555443 777 899999999999988776543
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.81 E-value=2.5e-19 Score=163.19 Aligned_cols=122 Identities=22% Similarity=0.324 Sum_probs=102.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCC
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGF 145 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 145 (216)
.+|||+|||+++||++|+++|++||.|.+|++++|..|++++|||||+|.+.++|++|++.+|+..+.|+.|+|.++...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999997532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 146 QDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
...+ ......+.|.|++.. .++ ++|.++|+.||.+...+.+.
T Consensus 81 ~~~~----------------~~~~~~vfV~nLp~~------~~~-~~L~~~F~~~G~i~~~~i~~ 122 (562)
T TIGR01628 81 PSLR----------------RSGVGNIFVKNLDKS------VDN-KALFDTFSKFGNILSCKVAT 122 (562)
T ss_pred cccc----------------ccCCCceEEcCCCcc------CCH-HHHHHHHHhcCCcceeEeee
Confidence 2111 001122566666554 788 89999999999988766653
No 7
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=2.4e-19 Score=136.65 Aligned_cols=122 Identities=29% Similarity=0.431 Sum_probs=92.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||.++.+.+|+++|.+||.|..|.+... .....||||+|+++.+|+.||..-+|..++|.+|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999988432 235689999999999999999999999999999999999
Q ss_pred CCCCCCCC----CC-CCCCCCC---CC--CCCCCCCCCCcccccCCCCCCchhcccc
Q 037453 143 WGFQDGRQ----WG-RGRSGGQ---VR--DEYRTDYDPDILLLTLLNFMCWSDVVNI 189 (216)
Q Consensus 143 ~~~~~~~~----~~-~~~~~~~---~~--~~~~~~~~~~~~v~~~~~~~s~~~~~~~ 189 (216)
++...... ++ +++.|+. .+ ...+.+ ..+.|.+||.+.|||+++|.
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe--~RVvVsGLp~SgSWQDLKDH 135 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSE--YRVVVSGLPPSGSWQDLKDH 135 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccc--eeEEEecCCCCCchHHHHHH
Confidence 87542211 11 1111111 11 111122 22788899999999999987
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.80 E-value=6.1e-19 Score=156.77 Aligned_cols=135 Identities=21% Similarity=0.303 Sum_probs=104.0
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
....++|||+|||+.+++++|+++|++||.|..|.++.|+.+++++|||||+|.+.++|.+||. |+|..+.|++|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999999999999999999999999999998 999999999999998
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 142 DWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+...............+. . .....+.|.||+. ..++ ++|+++|++||.+..+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~----~--p~~~~l~v~nl~~------~~te-~~l~~~f~~~G~i~~v~~~~ 220 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGD----I--PNFLKLYVGNLHF------NITE-QELRQIFEPFGDIEDVQLHR 220 (457)
T ss_pred cchhhhhhhhcccccCCC----C--CCCCEEEEcCCCC------CCCH-HHHHHHHHhcCCeEEEEEEE
Confidence 754322111000000000 0 0012245555554 3777 89999999999988877663
No 9
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=3.9e-19 Score=142.00 Aligned_cols=128 Identities=20% Similarity=0.332 Sum_probs=110.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...+.|.|.-||..+|+++|+.+|...|+|++|++++|+.+|++.||+||.|.++++|++|+..|||..|..+.|+|++|
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 35578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCccccccccccC
Q 037453 143 WGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHLICG 215 (216)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~ 215 (216)
++... ..+ +.++.|.++|.. ++. .+|+++|++||.+-+-+++.+..+|
T Consensus 119 RPSs~---------------~Ik---~aNLYvSGlPkt------Mtq-kelE~iFs~fGrIItSRiL~dqvtg 166 (360)
T KOG0145|consen 119 RPSSD---------------SIK---DANLYVSGLPKT------MTQ-KELEQIFSPFGRIITSRILVDQVTG 166 (360)
T ss_pred cCChh---------------hhc---ccceEEecCCcc------chH-HHHHHHHHHhhhhhhhhhhhhcccc
Confidence 75322 222 355788888876 666 8899999999998887777654443
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.2e-19 Score=143.07 Aligned_cols=137 Identities=21% Similarity=0.299 Sum_probs=106.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
....+||+-|.+.++-++|++.|.+||+|.++++++|..|++++||+||.|.+.++|+.||..|||.-|++|.|+-.||.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CC--CCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCcccccccc
Q 037453 144 GFQDGRQWGRGRSGGQVRDE-YR--TDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHL 212 (216)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~ 212 (216)
.++....... ..-++ +- ...+..+.+.|+++ ..++ +.+++.|+.||.+-.++.-+..
T Consensus 141 RKp~e~n~~~-----ltfdeV~NQssp~NtsVY~G~I~~------~lte-~~mr~~Fs~fG~I~EVRvFk~q 200 (321)
T KOG0148|consen 141 RKPSEMNGKP-----LTFDEVYNQSSPDNTSVYVGNIAS------GLTE-DLMRQTFSPFGPIQEVRVFKDQ 200 (321)
T ss_pred cCccccCCCC-----ccHHHHhccCCCCCceEEeCCcCc------cccH-HHHHHhcccCCcceEEEEeccc
Confidence 5542211111 00000 11 11122244444444 2666 7899999999998877665544
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=1.5e-17 Score=143.07 Aligned_cols=81 Identities=25% Similarity=0.382 Sum_probs=75.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC--eeEEEEe
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDD--RPIRVDF 141 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g--~~l~V~~ 141 (216)
..++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|++|++.|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999998889999999999999999999999999998877 6788888
Q ss_pred eCC
Q 037453 142 DWG 144 (216)
Q Consensus 142 a~~ 144 (216)
+..
T Consensus 168 a~~ 170 (352)
T TIGR01661 168 ANN 170 (352)
T ss_pred CCC
Confidence 754
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.76 E-value=2.5e-18 Score=156.58 Aligned_cols=140 Identities=21% Similarity=0.224 Sum_probs=102.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC----CeeEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD----DRPIR 138 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~----g~~l~ 138 (216)
...++|||+|||+++|+++|+++|+.||.|.++.+..+. +++++|||||+|.+.++|.+|++.|++..+. |+.|.
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 356789999999999999999999999999999999884 6889999999999999999999999999999 99999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 139 VDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 139 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
|..+.........-+..................+.|.|++. ..++ ++|+++|++||.+...++..
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~------~~~~-~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDD------TVTD-EKLRELFSECGEITSAKVML 319 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCC------ccCH-HHHHHHHHhcCCeEEEEEEE
Confidence 98876533221000000000000000011112244454444 3777 89999999999988776653
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.75 E-value=3.2e-17 Score=140.42 Aligned_cols=82 Identities=27% Similarity=0.452 Sum_probs=76.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC--eeEEEEe
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDD--RPIRVDF 141 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g--~~l~V~~ 141 (216)
..++|||+|||+.+|+++|+++|++||+|..+.|++|+.+++++|||||+|.+.++|++||+.||+..+.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999998866 7899999
Q ss_pred eCCC
Q 037453 142 DWGF 145 (216)
Q Consensus 142 a~~~ 145 (216)
+...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 8654
No 14
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=3.3e-18 Score=135.46 Aligned_cols=83 Identities=30% Similarity=0.409 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|-|.|||.+++|++|+++|.+||.|.++.+.+|+.||.++|||||+|.++++|.+||..|||.-++.--|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 037453 143 WGF 145 (216)
Q Consensus 143 ~~~ 145 (216)
+|.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 763
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.75 E-value=1.9e-17 Score=148.13 Aligned_cols=77 Identities=13% Similarity=0.178 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 63 LASTTVYVGNMSF-YTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 63 ~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
.+.++|||+|||+ .+|+++|+++|+.||.|.+|+++++ .+|||||+|.+.++|..|+..|||..|.|++|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3568999999998 6999999999999999999999886 369999999999999999999999999999999999
Q ss_pred eCC
Q 037453 142 DWG 144 (216)
Q Consensus 142 a~~ 144 (216)
+..
T Consensus 348 s~~ 350 (481)
T TIGR01649 348 SKQ 350 (481)
T ss_pred ccc
Confidence 854
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.75 E-value=3e-17 Score=147.68 Aligned_cols=146 Identities=17% Similarity=0.229 Sum_probs=103.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
...+|||+|||+.+|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|..||..|||..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCC--------CCCCCCCCCCCCCCCCcccccCCCCCCchhcccc------chhhHHHhhhcCCCCccccc
Q 037453 144 GFQDGRQWGRGR--------SGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNI------SFHRTEAFNSFGGGDAYKSV 209 (216)
Q Consensus 144 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~------~~~l~~~F~~fG~~~~~~~~ 209 (216)
............ ..............+...+. |.|+..-.++.+. .++|++.|++||.+..+.++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~-l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQ-LTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEE-eccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 433221110000 00000000000001112222 4444322333332 14689999999999988776
Q ss_pred c
Q 037453 210 N 210 (216)
Q Consensus 210 ~ 210 (216)
.
T Consensus 453 ~ 453 (509)
T TIGR01642 453 R 453 (509)
T ss_pred c
Confidence 4
No 17
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.73 E-value=3.6e-17 Score=107.94 Aligned_cols=70 Identities=36% Similarity=0.589 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 037453 68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIR 138 (216)
Q Consensus 68 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 138 (216)
|||+|||+++|+++|+++|++||.|..+.+..+ .++..+++|||+|.+.++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 7788999999999999999999999999999999885
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.72 E-value=6e-17 Score=144.97 Aligned_cols=130 Identities=14% Similarity=0.115 Sum_probs=96.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh--CCceeCCeeEEEEe
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI--SGTILDDRPIRVDF 141 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l--~g~~l~g~~l~V~~ 141 (216)
++++|||+|||+++++++|+++|++||.|.+|.+++ .+|||||+|.+.++|++|+..+ ++..+.|++|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 368999999999999999999999999999999875 4589999999999999999864 77999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCcccccccc
Q 037453 142 DWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHL 212 (216)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~ 212 (216)
+......+..... . . ......-..|+ +.++ ....++ ++|.++|+.||.+..+.+....
T Consensus 75 s~~~~~~~~~~~~-~-----~--~~~~~~~~~v~-v~nl---~~~vt~-~~L~~~F~~~G~V~~v~i~~~~ 132 (481)
T TIGR01649 75 STSQEIKRDGNSD-F-----D--SAGPNKVLRVI-VENP---MYPITL-DVLYQIFNPYGKVLRIVTFTKN 132 (481)
T ss_pred cCCcccccCCCCc-c-----c--CCCCCceEEEE-EcCC---CCCCCH-HHHHHHHhccCCEEEEEEEecC
Confidence 9654322211000 0 0 00001112333 4554 334777 8999999999998887765544
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.72 E-value=1.7e-17 Score=126.12 Aligned_cols=119 Identities=29% Similarity=0.399 Sum_probs=100.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
....+|||+||+..++++.|.++|-+.|.|.++++++|+.+...+||||++|.++++|+-|++.||...|-|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCc
Q 037453 143 WGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDA 205 (216)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~ 205 (216)
..... ... .+..++ +.|+ .+.+|+ ..|-++|+.||-.-.
T Consensus 87 s~~~~---------------nl~----vganlf-vgNL---d~~vDe-~~L~dtFsafG~l~~ 125 (203)
T KOG0131|consen 87 SAHQK---------------NLD----VGANLF-VGNL---DPEVDE-KLLYDTFSAFGVLIS 125 (203)
T ss_pred ccccc---------------ccc----cccccc-cccc---CcchhH-HHHHHHHHhcccccc
Confidence 52111 111 112333 5555 556999 999999999997644
No 20
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=2e-17 Score=140.13 Aligned_cols=124 Identities=21% Similarity=0.390 Sum_probs=100.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC-ceeCC--eeEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG-TILDD--RPIRV 139 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g-~~l~g--~~l~V 139 (216)
.+.-++|||.+|..++|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+|+. +.|-| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 3557899999999999999999999999999999999999999999999999999999999999998 45655 68899
Q ss_pred EeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 140 DFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
++|.+.+.+ . . ..++++ ++-+ ..-.+| .+++++|.+||-+++..++-
T Consensus 112 k~Ad~E~er---------------~--~--~e~KLF-vg~l---sK~~te-~evr~iFs~fG~Ied~~ilr 158 (510)
T KOG0144|consen 112 KYADGERER---------------I--V--EERKLF-VGML---SKQCTE-NEVREIFSRFGHIEDCYILR 158 (510)
T ss_pred cccchhhhc---------------c--c--cchhhh-hhhc---cccccH-HHHHHHHHhhCccchhhhee
Confidence 998753221 0 0 113444 4443 333666 88999999999998877664
No 21
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=8.5e-17 Score=121.67 Aligned_cols=80 Identities=34% Similarity=0.598 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++||||||+..+++.||+.+|..||.|..|.|.++ +.|||||+|+++.+|+.|+..|+|..|+|..|+|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4689999999999999999999999999999999875 56999999999999999999999999999999999998
Q ss_pred CCCCC
Q 037453 144 GFQDG 148 (216)
Q Consensus 144 ~~~~~ 148 (216)
+....
T Consensus 84 G~~r~ 88 (195)
T KOG0107|consen 84 GRPRG 88 (195)
T ss_pred CCccc
Confidence 76553
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.70 E-value=3.3e-16 Score=141.53 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=79.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+++++++|+++|+.||.|.++++.+|+.+++++|||||+|.+.++|.+||+.||+..++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 037453 144 GFQ 146 (216)
Q Consensus 144 ~~~ 146 (216)
+.+
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 644
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.69 E-value=1.4e-16 Score=143.50 Aligned_cols=108 Identities=21% Similarity=0.328 Sum_probs=91.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC-CeeEEEEee
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD-DRPIRVDFD 142 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~-g~~l~V~~a 142 (216)
..++|||+|||++++|++|+++|++||.|.+++|++| .+|+++|||||+|.+.++|++||+.||+..+. |+.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4689999999999999999999999999999999999 88999999999999999999999999998885 777777655
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCC
Q 037453 143 WGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGG 203 (216)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~ 203 (216)
.. ...+.|.|||.. +++ ++|.+.|.+++.+
T Consensus 136 ~~------------------------~~rLFVgNLP~~------~Te-eeL~eeFskv~eg 165 (578)
T TIGR01648 136 VD------------------------NCRLFVGGIPKN------KKR-EEILEEFSKVTEG 165 (578)
T ss_pred cc------------------------CceeEeecCCcc------hhh-HHHHHHhhcccCC
Confidence 31 112555555554 677 7899999999753
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.68 E-value=1.7e-15 Score=134.72 Aligned_cols=80 Identities=29% Similarity=0.556 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+.+|+++|+++|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..|||..|.|++|.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999964
No 25
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.68 E-value=1.2e-15 Score=137.51 Aligned_cols=79 Identities=27% Similarity=0.368 Sum_probs=71.7
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRA--GEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 139 (216)
+...++|||+|||+++|+++|+++|++| |+|.+|.++ ++||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 230 ~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V 301 (578)
T TIGR01648 230 MAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEV 301 (578)
T ss_pred cccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4456899999999999999999999999 999999875 469999999999999999999999999999999
Q ss_pred EeeCCCCCC
Q 037453 140 DFDWGFQDG 148 (216)
Q Consensus 140 ~~a~~~~~~ 148 (216)
.++.+....
T Consensus 302 ~~Akp~~~~ 310 (578)
T TIGR01648 302 TLAKPVDKK 310 (578)
T ss_pred EEccCCCcc
Confidence 999875443
No 26
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.67 E-value=1.8e-16 Score=122.81 Aligned_cols=82 Identities=26% Similarity=0.549 Sum_probs=78.9
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
+.....|-|.||.+.++.++|+.+|++||.|-+|.|++|+.|+.++|||||.|.+..+|+.|+++|+|..|+|+.|+|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eC
Q 037453 142 DW 143 (216)
Q Consensus 142 a~ 143 (216)
|.
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 85
No 27
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=1.6e-16 Score=125.35 Aligned_cols=80 Identities=26% Similarity=0.414 Sum_probs=74.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
.-++||||+|+|.+..++|+++|++||+|.+..++.|+.||+++||+||+|.+.++|.+|++. ..-.|+||+..|++|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 447999999999999999999999999999999999999999999999999999999999984 3478999999999985
Q ss_pred C
Q 037453 144 G 144 (216)
Q Consensus 144 ~ 144 (216)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 3
No 28
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.65 E-value=1.2e-15 Score=101.03 Aligned_cols=70 Identities=36% Similarity=0.610 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 037453 68 VYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIR 138 (216)
Q Consensus 68 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 138 (216)
|||+|||+++++++|+++|+.+|.|..+.+..++. +..+|+|||+|.++++|.+|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877 88999999999999999999999999999999875
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4e-16 Score=125.36 Aligned_cols=128 Identities=23% Similarity=0.316 Sum_probs=96.5
Q ss_pred hhhhheeeeccccccceeeeecchhhHHHHHhhhhcccccchhh-cC------CCCCChh-HHHHhcCCCcEEEEcCCCC
Q 037453 4 TKQYLWLVNRQKRTRHCFISSLLLGELSAMASLFKDQRKLSAYR-DR------RFPGTQE-EFEEALLASTTVYVGNMSF 75 (216)
Q Consensus 4 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~-~~~~~~~~~~~l~V~nLp~ 75 (216)
+|.|+||-+.+|..+.-.|. .|...-...+.....+ .+ .-+.+-+ ...+..+++++|||||++.
T Consensus 103 sKGYgFVSf~~k~dAEnAI~--------~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~ 174 (321)
T KOG0148|consen 103 SKGYGFVSFPNKEDAENAIQ--------QMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIAS 174 (321)
T ss_pred ccceeEEeccchHHHHHHHH--------HhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCc
Confidence 58999999999888744443 3332222222221111 11 1112222 2334567889999999999
Q ss_pred CCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCC
Q 037453 76 YTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGF 145 (216)
Q Consensus 76 ~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 145 (216)
-+||++|++.|++||.|.+|++..| +||+||.|++.|+|..||..||+..+.|..+++.|-+..
T Consensus 175 ~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 175 GLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred cccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 9999999999999999999999875 589999999999999999999999999999999997643
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.64 E-value=1.8e-15 Score=136.24 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=91.3
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHhhcc------------CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 037453 61 ALLASTTVYVGNMSFYTTEEQIYELFSRA------------GEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYIS 128 (216)
Q Consensus 61 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~------------G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~ 128 (216)
.....++|||+|||+.+|+++|+++|..+ +.|..+.+ ++.+|||||+|.+.++|..||. ||
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34567899999999999999999999875 23444444 3467999999999999999996 99
Q ss_pred CceeCCeeEEEEeeCCCCCCCCCCCCCCC-CC-----CC---CCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhh
Q 037453 129 GTILDDRPIRVDFDWGFQDGRQWGRGRSG-GQ-----VR---DEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNS 199 (216)
Q Consensus 129 g~~l~g~~l~V~~a~~~~~~~~~~~~~~~-~~-----~~---~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~ 199 (216)
|..+.|+.|+|.................. .. .. ............++ |.|+ +...++ ++|+++|++
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nl---p~~~~~-~~l~~~f~~ 318 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIY-IGNL---PLYLGE-DQIKELLES 318 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEE-EeCC---CCCCCH-HHHHHHHHh
Confidence 99999999999765432211100000000 00 00 00000111223344 4444 333777 899999999
Q ss_pred cCCCCccccccc
Q 037453 200 FGGGDAYKSVNH 211 (216)
Q Consensus 200 fG~~~~~~~~~~ 211 (216)
||.+..+.++..
T Consensus 319 ~G~i~~~~~~~~ 330 (509)
T TIGR01642 319 FGDLKAFNLIKD 330 (509)
T ss_pred cCCeeEEEEEec
Confidence 999988777653
No 31
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.63 E-value=2.9e-15 Score=121.65 Aligned_cols=78 Identities=26% Similarity=0.394 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+.+|+++|+++|+.||.|.+|.|++|+. .+|||||+|.++++|+.||. |||..|.|+.|.|..+.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 358999999999999999999999999999999998864 46899999999999999997 99999999999999986
Q ss_pred CC
Q 037453 144 GF 145 (216)
Q Consensus 144 ~~ 145 (216)
..
T Consensus 79 ~~ 80 (260)
T PLN03120 79 DY 80 (260)
T ss_pred CC
Confidence 54
No 32
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=3.3e-15 Score=121.51 Aligned_cols=83 Identities=28% Similarity=0.416 Sum_probs=79.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+-+||||+.|+++++|..|+..|+.||.|..|+|+.|..||+++|||||+|+++.+...|.+..+|..|+|+.|.|.+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 037453 143 WGF 145 (216)
Q Consensus 143 ~~~ 145 (216)
.+.
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 653
No 33
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=2.5e-15 Score=130.69 Aligned_cols=146 Identities=23% Similarity=0.292 Sum_probs=110.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
...||||++||++++.++|.++|+.+|+|..+.++.++.++.++||+||+|.-.+++++|+...++..+.|+.|.|.+|.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCC------CCCCC-CC-CCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCccccc---ccc
Q 037453 144 GFQDGRQWGRGRSG------GQVRD-EY-RTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSV---NHL 212 (216)
Q Consensus 144 ~~~~~~~~~~~~~~------~~~~~-~~-~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~---~~~ 212 (216)
.+.+......+... .+.+. .. -......+.+.|+|.. .-. .+|+.+|++||.+-.+.++ +..
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~------~k~-~dLk~vFs~~G~V~Ei~IP~k~dgk 156 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFK------CKK-PDLKNVFSNFGKVVEIVIPRKKDGK 156 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcc------cCc-HHHHHHHhhcceEEEEEcccCCCCC
Confidence 65443311111100 00000 00 0111233677777775 344 4799999999987765554 456
Q ss_pred ccCC
Q 037453 213 ICGW 216 (216)
Q Consensus 213 ~~~~ 216 (216)
.|||
T Consensus 157 lcGF 160 (678)
T KOG0127|consen 157 LCGF 160 (678)
T ss_pred ccce
Confidence 6776
No 34
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.5e-16 Score=120.53 Aligned_cols=84 Identities=31% Similarity=0.392 Sum_probs=80.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++||||+|..+++|.-|...|-+||.|.+|.++.|-+++++||||||+|...++|.+||..||+.+|.|+.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 037453 143 WGFQ 146 (216)
Q Consensus 143 ~~~~ 146 (216)
.|.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8754
No 35
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=7e-15 Score=125.29 Aligned_cols=112 Identities=17% Similarity=0.265 Sum_probs=96.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee-CCeeEEEEe
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTIL-DDRPIRVDF 141 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l-~g~~l~V~~ 141 (216)
...+-||||.||.++.|++|..+|++.|+|-+++|++|+.+|.+||||||+|.+.++|++||+.||+.+| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4678999999999999999999999999999999999999999999999999999999999999999988 589999998
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCc
Q 037453 142 DWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDA 205 (216)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~ 205 (216)
+... ..+.|.|+|.. +.. +++.+.|++.+.+..
T Consensus 161 Svan------------------------~RLFiG~IPK~------k~k-eeIlee~~kVteGVv 193 (506)
T KOG0117|consen 161 SVAN------------------------CRLFIGNIPKT------KKK-EEILEEMKKVTEGVV 193 (506)
T ss_pred eeec------------------------ceeEeccCCcc------ccH-HHHHHHHHhhCCCee
Confidence 7531 11455555554 677 778888999886543
No 36
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=2.7e-15 Score=109.04 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=79.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
....|||.++.+.+||++|.+.|..||+|..+.+..|+.||-.+|||+|+|++.++|++|+.++||..|.|..|.|.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCC
Q 037453 144 GFQ 146 (216)
Q Consensus 144 ~~~ 146 (216)
-..
T Consensus 151 v~g 153 (170)
T KOG0130|consen 151 VKG 153 (170)
T ss_pred ecC
Confidence 543
No 37
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=2.8e-15 Score=127.21 Aligned_cols=85 Identities=28% Similarity=0.447 Sum_probs=76.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc-eeCC--eeEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGT-ILDD--RPIRV 139 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~-~l~g--~~l~V 139 (216)
...++||||.|+..+||.+++++|++||.|++|.|++|.. +.+||||||.|.+.+.|..||++|||. .+.| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 4578999999999999999999999999999999999854 789999999999999999999999994 4554 79999
Q ss_pred EeeCCCCCC
Q 037453 140 DFDWGFQDG 148 (216)
Q Consensus 140 ~~a~~~~~~ 148 (216)
+||.+.+.+
T Consensus 201 kFADtqkdk 209 (510)
T KOG0144|consen 201 KFADTQKDK 209 (510)
T ss_pred EecccCCCc
Confidence 999875543
No 38
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=3.2e-16 Score=119.25 Aligned_cols=86 Identities=30% Similarity=0.416 Sum_probs=80.3
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 037453 59 EEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIR 138 (216)
Q Consensus 59 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 138 (216)
.+.-.++.-|||||||++.||.+|.-+|++||+|++|.+++|+.||+++||||+.|++..+.--|+..|||..|.||.|+
T Consensus 29 H~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtir 108 (219)
T KOG0126|consen 29 HQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIR 108 (219)
T ss_pred hhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEE
Confidence 33445789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCC
Q 037453 139 VDFDWG 144 (216)
Q Consensus 139 V~~a~~ 144 (216)
|..-..
T Consensus 109 VDHv~~ 114 (219)
T KOG0126|consen 109 VDHVSN 114 (219)
T ss_pred eeeccc
Confidence 998644
No 39
>PLN03213 repressor of silencing 3; Provisional
Probab=99.58 E-value=8e-15 Score=126.44 Aligned_cols=78 Identities=12% Similarity=0.224 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCH--HHHHHHHHHhCCceeCCeeEEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSR--EDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~--~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
....+||||||++.+++++|+.+|..||.|.+|.|+ +.|| ||||||+|.+. .++.+||..|||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 456899999999999999999999999999999999 4566 89999999987 78999999999999999999999
Q ss_pred eeCC
Q 037453 141 FDWG 144 (216)
Q Consensus 141 ~a~~ 144 (216)
.|++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 9964
No 40
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=4.5e-15 Score=122.11 Aligned_cols=84 Identities=18% Similarity=0.323 Sum_probs=76.5
Q ss_pred HhcCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 037453 60 EALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139 (216)
Q Consensus 60 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 139 (216)
......++|+|.|||+...+.||+.+|.+||.|.+|.|+.+. ..+|||+||+|++.+||++|-++|+|..+.||+|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 344567999999999999999999999999999999999863 348999999999999999999999999999999999
Q ss_pred EeeCCC
Q 037453 140 DFDWGF 145 (216)
Q Consensus 140 ~~a~~~ 145 (216)
+.|..+
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 998653
No 41
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1.2e-14 Score=116.52 Aligned_cols=81 Identities=25% Similarity=0.376 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC--eeEEEEe
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDD--RPIRVDF 141 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g--~~l~V~~ 141 (216)
....|||.+||..+|..+|+.+|++||.|..-+|+.|..||.++|.+||.|+...+|+.||..|||..-.| .+|.|++
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 56899999999999999999999999999999999999999999999999999999999999999987665 6899999
Q ss_pred eCC
Q 037453 142 DWG 144 (216)
Q Consensus 142 a~~ 144 (216)
|..
T Consensus 206 ann 208 (360)
T KOG0145|consen 206 ANN 208 (360)
T ss_pred cCC
Confidence 854
No 42
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=8.5e-14 Score=113.63 Aligned_cols=80 Identities=34% Similarity=0.608 Sum_probs=77.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCC
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWG 144 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 144 (216)
..+|||+|||..+++++|.++|..||.|..+.+..|+.++.++|||||+|.+.++|..|+..+++..+.|++|.|..+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999753
No 43
>smart00362 RRM_2 RNA recognition motif.
Probab=99.57 E-value=2.5e-14 Score=93.61 Aligned_cols=72 Identities=42% Similarity=0.669 Sum_probs=67.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 67 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
+|||+|||..+++++|+++|.+||.|..+.+..++ +.++|+|||+|.+.++|++|+..+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 6788999999999999999999999999999998874
No 44
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=3.5e-14 Score=123.64 Aligned_cols=79 Identities=28% Similarity=0.617 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
+..+|.|.|||+.+.+.+|+.+|+.||.|..|.|++.+.++. .|||||.|....+|..|++.+|+..|+|++|-|.||.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgkl-cGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKL-CGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCc-cceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 368999999999999999999999999999999998766554 4999999999999999999999999999999999984
No 45
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.2e-14 Score=123.76 Aligned_cols=128 Identities=22% Similarity=0.299 Sum_probs=95.9
Q ss_pred eccccccceeeeecchhhHHHHHhhhhcccc--cchhhcCCCC-CChhHHHHhcCCCcEEEEcCCCCCCCHHHHHHHhhc
Q 037453 12 NRQKRTRHCFISSLLLGELSAMASLFKDQRK--LSAYRDRRFP-GTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSR 88 (216)
Q Consensus 12 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~ 88 (216)
+..|--.+||++...|.......+.+-+..- ......-... +..+..++.+..-+.|||.||+.++|++.|+++|++
T Consensus 203 dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~ 282 (506)
T KOG0117|consen 203 DKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNE 282 (506)
T ss_pred ccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHh
Confidence 3455567899999988877665544443321 0000001111 111222234567799999999999999999999999
Q ss_pred cCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCCCC
Q 037453 89 AGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQD 147 (216)
Q Consensus 89 ~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~~~ 147 (216)
||.|.+|+.++| ||||.|.++++|.+|++.+||+.|+|..|.|.+|++...
T Consensus 283 ~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 283 FGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred ccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 999999988765 999999999999999999999999999999999987543
No 46
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.56 E-value=1e-14 Score=118.35 Aligned_cols=111 Identities=19% Similarity=0.274 Sum_probs=92.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCC
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGF 145 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 145 (216)
.+|||||||..+++.+|+.+|++||.|.+|.|+++ ||||..++...|+.||..|+|..|.|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999764 9999999999999999999999999999999988643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 146 QDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
.+ ..-+++ ++|+ .+.-+. .+|+..|.+||.+..=++|++
T Consensus 75 sk----------------------~stkl~-vgNi---s~tctn-~ElRa~fe~ygpviecdivkd 113 (346)
T KOG0109|consen 75 SK----------------------ASTKLH-VGNI---SPTCTN-QELRAKFEKYGPVIECDIVKD 113 (346)
T ss_pred CC----------------------Cccccc-cCCC---CccccC-HHHhhhhcccCCceeeeeecc
Confidence 11 112334 6665 344555 679999999999877776654
No 47
>smart00360 RRM RNA recognition motif.
Probab=99.54 E-value=4.4e-14 Score=92.07 Aligned_cols=71 Identities=41% Similarity=0.653 Sum_probs=67.1
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 70 VGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 70 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|.+|+..+++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988888999999999999999999999999999999998874
No 48
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.54 E-value=4.7e-14 Score=113.01 Aligned_cols=77 Identities=23% Similarity=0.264 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
...+|||+||++.+|+++|+++|+.||+|.+|.|++|.. .++||||+|.++++|+.|+. |+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 457999999999999999999999999999999999854 45899999999999999997 99999999999999865
Q ss_pred C
Q 037453 144 G 144 (216)
Q Consensus 144 ~ 144 (216)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 49
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.8e-15 Score=125.06 Aligned_cols=81 Identities=33% Similarity=0.473 Sum_probs=77.0
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 61 ALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 61 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
...-.++||||.+.+...|+.|+..|.+||.|.+|.+..|+.|++++|||||+|+-++.|+-|++.|||..++||.|+|.
T Consensus 109 ALaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 109 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HHHHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 33456999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred e
Q 037453 141 F 141 (216)
Q Consensus 141 ~ 141 (216)
.
T Consensus 189 r 189 (544)
T KOG0124|consen 189 R 189 (544)
T ss_pred C
Confidence 4
No 50
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.49 E-value=6.9e-14 Score=122.02 Aligned_cols=81 Identities=28% Similarity=0.578 Sum_probs=78.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCC
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGF 145 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 145 (216)
+.+||||+|+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.++|+.|++.|||..+.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred C
Q 037453 146 Q 146 (216)
Q Consensus 146 ~ 146 (216)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 51
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.48 E-value=4.5e-13 Score=88.02 Aligned_cols=74 Identities=39% Similarity=0.687 Sum_probs=68.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 67 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
+|+|+|||+.+++++|+++|..+|.|..+.+..++.+ .++|+|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987665 6789999999999999999999999999999998864
No 52
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.48 E-value=6e-14 Score=117.63 Aligned_cols=121 Identities=22% Similarity=0.320 Sum_probs=97.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||++|+++++++.|++.|.+||+|.+|.+++|+.+++++||+||+|.+++...++|. ..-+.|+|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67999999999999999999999999999999999999999999999999999999999987 55689999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCC
Q 037453 144 GFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGD 204 (216)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~ 204 (216)
++.......+.. ....++ +..+ ....++ +++++.|.+||-+.
T Consensus 84 ~r~~~~~~~~~~--------------~tkkiF-vGG~---~~~~~e-~~~r~yfe~~g~v~ 125 (311)
T KOG4205|consen 84 SREDQTKVGRHL--------------RTKKIF-VGGL---PPDTTE-EDFKDYFEQFGKVA 125 (311)
T ss_pred Cccccccccccc--------------ceeEEE-ecCc---CCCCch-HHHhhhhhccceeE
Confidence 644332211100 123444 4444 444888 99999999999543
No 53
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=2.7e-13 Score=94.33 Aligned_cols=78 Identities=28% Similarity=0.488 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
-.+.|||.|||+.+|.++..++|.+||.|..|++-..+. .+|-|||.|++..+|.+|+..|+|..+.++.|.|-+-.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 458999999999999999999999999999999976655 57999999999999999999999999999999999875
Q ss_pred C
Q 037453 144 G 144 (216)
Q Consensus 144 ~ 144 (216)
+
T Consensus 94 ~ 94 (124)
T KOG0114|consen 94 P 94 (124)
T ss_pred H
Confidence 4
No 54
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.1e-13 Score=117.64 Aligned_cols=106 Identities=24% Similarity=0.410 Sum_probs=92.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCC
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGF 145 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 145 (216)
..|||| +++|+..|.++|+++|.+.++++.+|. | +.|||||.|.++++|++||.+||...+.|+++++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468998 999999999999999999999999998 6 9999999999999999999999999999999999998521
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCccc
Q 037453 146 QDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYK 207 (216)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~ 207 (216)
.. . ++ +.|+ ++..|. ..|.+.|+.||.+-+.+
T Consensus 76 ~~----------------~---------~~-i~nl---~~~~~~-~~~~d~f~~~g~ilS~k 107 (369)
T KOG0123|consen 76 PS----------------L---------VF-IKNL---DESIDN-KSLYDTFSEFGNILSCK 107 (369)
T ss_pred Cc----------------e---------ee-ecCC---CcccCc-HHHHHHHHhhcCeeEEE
Confidence 11 1 44 6666 666888 89999999999985544
No 55
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.1e-13 Score=111.27 Aligned_cols=91 Identities=12% Similarity=0.224 Sum_probs=84.5
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 037453 59 EEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIR 138 (216)
Q Consensus 59 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 138 (216)
..+.++.|.|||-.||.+..+.+|..+|-+||.|++.++..|+.|..+++|+||.|+++.+|++||.+|||..|+-++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCC
Q 037453 139 VDFDWGFQDGR 149 (216)
Q Consensus 139 V~~a~~~~~~~ 149 (216)
|...+++...|
T Consensus 359 VQLKRPkdanR 369 (371)
T KOG0146|consen 359 VQLKRPKDANR 369 (371)
T ss_pred hhhcCccccCC
Confidence 99988765443
No 56
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.44 E-value=6.6e-14 Score=113.69 Aligned_cols=118 Identities=20% Similarity=0.235 Sum_probs=94.7
Q ss_pred cchhhhheeeeccccccceeeeecchhhHHHHHhhhhcccccchhhcCCCCCChhHHHHhcCCCcEEEEcCCCCCCCHHH
Q 037453 2 AITKQYLWLVNRQKRTRHCFISSLLLGELSAMASLFKDQRKLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQ 81 (216)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~ 81 (216)
.|.|.|+|||..+|-.+.=.+.++++=++....-.++.... .....++|+|+||.+.++.++
T Consensus 33 DIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks------------------Ksk~stkl~vgNis~tctn~E 94 (346)
T KOG0109|consen 33 DIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS------------------KSKASTKLHVGNISPTCTNQE 94 (346)
T ss_pred eeecccceEEeecccccHHHHhhcccceecceEEEEEeccc------------------cCCCccccccCCCCccccCHH
Confidence 37899999999998888666666554444332111111111 023678999999999999999
Q ss_pred HHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCC
Q 037453 82 IYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGF 145 (216)
Q Consensus 82 l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 145 (216)
|+..|.+||.|.+|.|++ +|+||.|+-.++|..|+..||+..+.|+++.|+.+.++
T Consensus 95 lRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 95 LRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred HhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 999999999999999976 49999999999999999999999999999999998654
No 57
>smart00361 RRM_1 RNA recognition motif.
Probab=99.43 E-value=9.5e-13 Score=87.40 Aligned_cols=62 Identities=26% Similarity=0.416 Sum_probs=56.2
Q ss_pred HHHHHHHhh----ccCCeeEEE-EeecCCC--CCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 79 EEQIYELFS----RAGEIKKII-MGLDKNS--KTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 79 e~~l~~~F~----~~G~i~~v~-i~~d~~t--g~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
+++|+++|+ +||.|.++. ++.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999995 7777777 8999999999999999999999999999999999863
No 58
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.42 E-value=5.1e-13 Score=101.89 Aligned_cols=122 Identities=20% Similarity=0.319 Sum_probs=95.1
Q ss_pred ccccceeeeecchhhHHHHHhhhh------cccccchhhcCCCCCChhHHHHhcCCCcEEEEcCCCCCCCHHHHHHHhhc
Q 037453 15 KRTRHCFISSLLLGELSAMASLFK------DQRKLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSR 88 (216)
Q Consensus 15 ~~~~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~ 88 (216)
+-...||+++....+.+..-+.+. .+-... +.. ....+.....+|||+||.+.++|..|.+.|+.
T Consensus 49 ~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~----kas-----~~~~nl~vganlfvgNLd~~vDe~~L~dtFsa 119 (203)
T KOG0131|consen 49 KHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN----KAS-----AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSA 119 (203)
T ss_pred cccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE----ecc-----cccccccccccccccccCcchhHHHHHHHHHh
Confidence 445678888877666654444433 221111 111 11223445689999999999999999999999
Q ss_pred cCCeeEE-EEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCC
Q 037453 89 AGEIKKI-IMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGF 145 (216)
Q Consensus 89 ~G~i~~v-~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 145 (216)
||.+... .+++|+.||.++|||||.|.+.+.+.+|+..|||..+..+++.|.++...
T Consensus 120 fG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 120 FGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred ccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEec
Confidence 9998764 78999999999999999999999999999999999999999999999643
No 59
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.3e-12 Score=112.76 Aligned_cols=126 Identities=17% Similarity=0.302 Sum_probs=96.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCC
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWG 144 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 144 (216)
...|||.||+++++..+|.++|+.||+|.+|++.+|... ++|| ||+|+++++|.+|++.+||..+.|++|.|.....
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 344999999999999999999999999999999998654 8999 9999999999999999999999999999998764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 145 FQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
...... +... ....-.+..+.+.+ ...+. +.|.+.|+.||.+.+.....
T Consensus 153 ~~er~~--------~~~~--~~~~~t~v~vk~~~------~~~~~-~~l~~~f~~~g~i~s~~v~~ 201 (369)
T KOG0123|consen 153 KEEREA--------PLGE--YKKRFTNVYVKNLE------EDSTD-EELKDLFSAYGSITSVAVMR 201 (369)
T ss_pred hhhhcc--------cccc--hhhhhhhhheeccc------cccch-HHHHHhhcccCcceEEEEee
Confidence 332111 0111 11111223344333 22555 78999999999988765544
No 60
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.39 E-value=3.6e-12 Score=100.48 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHH----HhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYE----LFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIR 138 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~----~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 138 (216)
.+..+|||.||+..+..++|+. +|++||.|..|... .|.+.+|-|||.|.+.+.|..|+.+|+|..+-|++++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4556999999999999999887 99999999999874 4678999999999999999999999999999999999
Q ss_pred EEeeCCC
Q 037453 139 VDFDWGF 145 (216)
Q Consensus 139 V~~a~~~ 145 (216)
|.+|...
T Consensus 84 iqyA~s~ 90 (221)
T KOG4206|consen 84 IQYAKSD 90 (221)
T ss_pred eecccCc
Confidence 9999653
No 61
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=2.1e-12 Score=115.70 Aligned_cols=132 Identities=23% Similarity=0.351 Sum_probs=99.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCC---CCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNS---KTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t---g~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
..++|||.||++++|.++|...|...|.|.++.|..-+.. -.+.|||||+|.++++|++|+..|+|..|+|+.|.|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3445999999999999999999999999999988654322 1356999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 141 FDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
++...+.... +.... .......+.|.|+|.. ..+ ..++++|+.||-..+.++++.
T Consensus 594 ~S~~k~~~~~-------gK~~~--~kk~~tKIlVRNipFe----At~---rEVr~LF~aFGqlksvRlPKK 648 (725)
T KOG0110|consen 594 ISENKPASTV-------GKKKS--KKKKGTKILVRNIPFE----ATK---REVRKLFTAFGQLKSVRLPKK 648 (725)
T ss_pred eccCcccccc-------ccccc--cccccceeeeeccchH----HHH---HHHHHHHhcccceeeeccchh
Confidence 9972221110 01111 1111234677777775 333 458999999999998887765
No 62
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.38 E-value=3.4e-12 Score=80.84 Aligned_cols=56 Identities=39% Similarity=0.727 Sum_probs=50.7
Q ss_pred HHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 82 IYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 82 l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
|.++|++||+|..+.+..+. +++|||+|.+.++|..|++.|||..+.|++|+|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997643 589999999999999999999999999999999986
No 63
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.33 E-value=3.5e-12 Score=111.46 Aligned_cols=77 Identities=30% Similarity=0.531 Sum_probs=73.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
..||||||.+.+++++|+.+|++||.|..|.+.+|..||.++||+||+|.+.++|.+|++.|||..|.|+.|+|..-
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999998764
No 64
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.4e-12 Score=106.34 Aligned_cols=83 Identities=27% Similarity=0.392 Sum_probs=79.5
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
.++...|||..|.+-+|.++|+-+|+.||.|.+|.+++|..||.+..||||+|++.+++++|.-.|++..|++++|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 36779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCC
Q 037453 142 DWG 144 (216)
Q Consensus 142 a~~ 144 (216)
+.+
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 854
No 65
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.27 E-value=9.8e-12 Score=112.31 Aligned_cols=103 Identities=26% Similarity=0.442 Sum_probs=88.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
-++|||||+|+..+++.+|..+|+.||+|.+|.++. ++|||||.+....+|++|+..|+...+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 368999999999999999999999999999998865 68999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhcccc
Q 037453 144 GFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNI 189 (216)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~ 189 (216)
+. +.+++|...|+..++|+-||. ..+.++
T Consensus 494 g~-------------G~kse~k~~wD~~lGVt~IP~----~kLt~d 522 (894)
T KOG0132|consen 494 GK-------------GPKSEYKDYWDVELGVTYIPW----EKLTDD 522 (894)
T ss_pred cC-------------CcchhhhhhhhcccCeeEeeh----HhcCHH
Confidence 53 344578888888788886555 355544
No 66
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=1.5e-11 Score=102.20 Aligned_cols=130 Identities=17% Similarity=0.190 Sum_probs=88.2
Q ss_pred heeeeccccccceeeeecchhhHHHHHhhhh-----cccccchhh-cCCCCCChhHHHHhcCCCcEEEEcCCCCCCCHHH
Q 037453 8 LWLVNRQKRTRHCFISSLLLGELSAMASLFK-----DQRKLSAYR-DRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQ 81 (216)
Q Consensus 8 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~ 81 (216)
+||...+||.+.|.+.+--....+-..+.+. -..|..... .+...... ..+.......+|||++|...+++.+
T Consensus 166 f~v~geckRG~ec~yrhEkp~d~~L~~qni~dryyg~ndPva~kil~ra~~~~~-lepPeD~~I~tLyIg~l~d~v~e~d 244 (377)
T KOG0153|consen 166 FFVKGECKRGAECPYRHEKPPDDPLSLQNIKDRYYGLNDPVALKILNRAGSAGT-LEPPEDTSIKTLYIGGLNDEVLEQD 244 (377)
T ss_pred ceeeccccccccccccccCCCCcchhhcccccccccccChHHHHHHhhcccccc-cCCCcccceeEEEecccccchhHHH
Confidence 5888899999999986644322111111111 011111000 00000000 1111233568999999999999999
Q ss_pred HHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH-hCCceeCCeeEEEEeeCC
Q 037453 82 IYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY-ISGTILDDRPIRVDFDWG 144 (216)
Q Consensus 82 l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~-l~g~~l~g~~l~V~~a~~ 144 (216)
|+++|.+||+|..+.+.. .+++|||+|.+.++|+.|.+. +|...|+|++|.|.|..+
T Consensus 245 IrdhFyqyGeirsi~~~~------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 245 IRDHFYQYGEIRSIRILP------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred HHHHHhhcCCeeeEEeec------ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 999999999999998865 457999999999999998875 455788999999999877
No 67
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1e-11 Score=98.61 Aligned_cols=123 Identities=24% Similarity=0.404 Sum_probs=87.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCC
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGF 145 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 145 (216)
..+|||+||+.+.+.+|+.+|..||.+.++.+. .||+||+|.+..+|..|+..+|+..|.|..+.|+++.+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 478999999999999999999999999999873 379999999999999999999999999988999998865
Q ss_pred CCCCCCCCCCCCCCCCCCCC--CCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCC
Q 037453 146 QDGRQWGRGRSGGQVRDEYR--TDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGG 203 (216)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~ 203 (216)
....+.++++........+. ......+.+.++.--.+|+ +|.+.|.++|..
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~q-------dl~d~~~~~g~~ 126 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQ-------DLKDHFRPAGEV 126 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHH-------HHhhhhcccCCC
Confidence 44432211110000011111 1112224445555544455 455559999987
No 68
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.25 E-value=2.4e-11 Score=103.78 Aligned_cols=79 Identities=18% Similarity=0.323 Sum_probs=73.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 65 STTVYVGNMSFYTTEEQIYELFS-RAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
.+.+||.|+|+++.+++|+++|. +.|+|+.|.++.| .+|+++|||.|+|.++|.+++|++.||.+.+.|++|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 45699999999999999999997 6899999999998 568999999999999999999999999999999999999875
Q ss_pred C
Q 037453 144 G 144 (216)
Q Consensus 144 ~ 144 (216)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 4
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=4.2e-12 Score=113.79 Aligned_cols=81 Identities=21% Similarity=0.378 Sum_probs=75.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..+.|.|.|||+.++-.+++++|..||.|.+|+++.-...+.++|||||+|-++.+|.+|+.+|....|-|++|.++||.
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 35799999999999999999999999999999998765666789999999999999999999999999999999999996
Q ss_pred C
Q 037453 144 G 144 (216)
Q Consensus 144 ~ 144 (216)
.
T Consensus 692 ~ 692 (725)
T KOG0110|consen 692 S 692 (725)
T ss_pred c
Confidence 4
No 70
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.20 E-value=5.3e-11 Score=92.65 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRA-GEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
.....+||..+|..+.+.+|..+|.++ |.+.++++.+++.||.++|||||+|++.+.|+-|-+.||+..+.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 356789999999999999999999988 7888899999999999999999999999999999999999999999999998
Q ss_pred eCCC
Q 037453 142 DWGF 145 (216)
Q Consensus 142 a~~~ 145 (216)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7553
No 71
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=1.1e-10 Score=97.73 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=81.1
Q ss_pred HHHHhcCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCee
Q 037453 57 EFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRP 136 (216)
Q Consensus 57 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~ 136 (216)
...+....-.+|||..+.++.+++||+.+|+.||+|..|.+.+++.++.++||+||+|.+..+...|+..||=..|+|..
T Consensus 202 ~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQy 281 (544)
T KOG0124|consen 202 MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQY 281 (544)
T ss_pred HHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccce
Confidence 33445567789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCC
Q 037453 137 IRVDFDWG 144 (216)
Q Consensus 137 l~V~~a~~ 144 (216)
|+|-.+..
T Consensus 282 LRVGk~vT 289 (544)
T KOG0124|consen 282 LRVGKCVT 289 (544)
T ss_pred EecccccC
Confidence 99988743
No 72
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.14 E-value=3.1e-10 Score=98.74 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
....+|||.|||.++++++|+++|..||.|+...|..-...++..+||||+|.+.++++.||.+ +-..+++++|.|+..
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 3456699999999999999999999999999887765333344459999999999999999994 578999999999988
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
++...
T Consensus 365 ~~~~~ 369 (419)
T KOG0116|consen 365 RPGFR 369 (419)
T ss_pred ccccc
Confidence 76433
No 73
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.11 E-value=1.6e-11 Score=107.32 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=108.5
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
..+.+++|+-.|+-..++.+|.++|+.+|.|.+|.++.|+.++.++|.|||+|.+.+.+..||. |.|..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 3467899999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred eCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCccccccccccC
Q 037453 142 DWGFQDGRQWGRGR-SGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHLICG 215 (216)
Q Consensus 142 a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~ 215 (216)
....+......... .++....+++ .++ ++|+ .-..++ .+|+.+|..||.++.+....+.-+|
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~-------rl~-vgnL---HfNite-~~lr~ifepfg~Ie~v~l~~d~~tG 317 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMR-------RLY-VGNL---HFNITE-DMLRGIFEPFGKIENVQLTKDSETG 317 (549)
T ss_pred cHHHHHHHHhccccccccccccchh-------hhh-hccc---ccCchH-HHHhhhccCcccceeeeeccccccc
Confidence 75322211100000 1111111111 133 5555 445888 9999999999999999888776443
No 74
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=2.2e-10 Score=92.53 Aligned_cols=83 Identities=18% Similarity=0.328 Sum_probs=73.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc-eeCC--eeEEEE
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGT-ILDD--RPIRVD 140 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~-~l~g--~~l~V~ 140 (216)
+.++||||-|...-.|||++.+|..||.|.+|.+++.+ .|.++|||||.|.+..+|..||..|+|. .+-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 56899999999999999999999999999999999865 4779999999999999999999999995 3444 679999
Q ss_pred eeCCCCC
Q 037453 141 FDWGFQD 147 (216)
Q Consensus 141 ~a~~~~~ 147 (216)
++...++
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9976443
No 75
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.01 E-value=5.3e-10 Score=94.00 Aligned_cols=83 Identities=20% Similarity=0.358 Sum_probs=77.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
...++||++||.+++++++++.|.+||.|..+.++.|..+.+++||+||+|.+++++.+++. ..-+.|.++.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 45699999999999999999999999999999999999999999999999999999999988 78899999999999997
Q ss_pred CCCC
Q 037453 144 GFQD 147 (216)
Q Consensus 144 ~~~~ 147 (216)
++..
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 7543
No 76
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.00 E-value=1.7e-09 Score=87.66 Aligned_cols=84 Identities=29% Similarity=0.420 Sum_probs=78.9
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 61 ALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 61 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
...+...+||+|+.+.+|.+++...|+.||.|..+.++.|+.++.++||+||+|.+.+.++.|+. ||+..|.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 45578999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred eeCCC
Q 037453 141 FDWGF 145 (216)
Q Consensus 141 ~a~~~ 145 (216)
+.+..
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 88654
No 77
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.98 E-value=1.9e-09 Score=95.02 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=76.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..+.|||.+|+..+...+|+.+|++||.|+..+++.+..+...++|+||++.+.++|.++|+.|+...|.|+.|.|+.+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 45789999999999999999999999999999999987777789999999999999999999999999999999999986
Q ss_pred CC
Q 037453 144 GF 145 (216)
Q Consensus 144 ~~ 145 (216)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 43
No 78
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.97 E-value=1.3e-09 Score=93.43 Aligned_cols=75 Identities=24% Similarity=0.379 Sum_probs=68.6
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
.++.++|||.|||+++|++.|++-|..||.|..+.|+ +.|+++| .|.|.++++|+.|+..|++..|.|+.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4577999999999999999999999999999988883 4577777 8999999999999999999999999999986
No 79
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.96 E-value=5.5e-09 Score=90.68 Aligned_cols=119 Identities=22% Similarity=0.207 Sum_probs=88.3
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
......|-+.+|||++|+++|.++|+.+ .|.++.+.+ .+|+..|-|||+|.+.+++++|++ .+...+..+.|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 3456788899999999999999999998 577766654 679999999999999999999999 788999999999998
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhh
Q 037453 142 DWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFN 198 (216)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~ 198 (216)
+.+.....-..+....+. ..+.-+.+.+||.. .++ +++.+.|.
T Consensus 83 ~~~~e~d~~~~~~g~~s~-------~~d~vVRLRGLPfs------cte-~dI~~FFa 125 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSS-------ANDGVVRLRGLPFS------CTE-EDIVEFFA 125 (510)
T ss_pred cCCccccccccCCCCCCC-------CCCceEEecCCCcc------CcH-HHHHHHhc
Confidence 866544332222111111 11122566678877 566 66677665
No 80
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.94 E-value=1.2e-08 Score=86.77 Aligned_cols=133 Identities=19% Similarity=0.260 Sum_probs=100.1
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 65 STTVYVGNMSF-YTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 65 ~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
...|.|.||.. .+|.+.|..+|.-||+|.+|+|+.++ +--|.|+|.+...|+-|++.|+|..+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57888999865 68999999999999999999999864 3579999999999999999999999999999999985
Q ss_pred CCC----CCCCCCC-----------CCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCC-Cccc
Q 037453 144 GFQ----DGRQWGR-----------GRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGG-DAYK 207 (216)
Q Consensus 144 ~~~----~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~-~~~~ 207 (216)
-.. +.+..++ .++..++...++..+.+...++ +.++ ++...+ +++++.|..-|+. ++|+
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlH-lsni---p~svse-e~lk~~f~~~g~~vkafk 446 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLH-LSNI---PPSVSE-EDLKNLFQEPGGQVKAFK 446 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhhee-eccC---Ccccch-hHHHHhhhcCCceEEeee
Confidence 321 1111111 1334445556666666654444 5554 444888 8999999998775 4454
No 81
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.91 E-value=6.1e-09 Score=84.51 Aligned_cols=79 Identities=32% Similarity=0.515 Sum_probs=72.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
...+|+|.|||+.+++++|+++|..||++..+.+.+|+ +|.+.|.|-|.|...++|.+|++.+|+..++|+.+.+....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34789999999999999999999999999999888874 58899999999999999999999999999999999888764
No 82
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.83 E-value=3.3e-08 Score=78.16 Aligned_cols=84 Identities=19% Similarity=0.267 Sum_probs=67.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEee-cCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC---CeeEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGL-DKNSKTPCGFCFALFYSREDTEDAVKYISGTILD---DRPIR 138 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~---g~~l~ 138 (216)
..-++|||.+||.++...+|..+|..|-.-..+.+-. ++...-.+-+|||+|.+..+|.+|+.+|||..++ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3569999999999999999999999986666555532 2222223479999999999999999999999886 67899
Q ss_pred EEeeCCCC
Q 037453 139 VDFDWGFQ 146 (216)
Q Consensus 139 V~~a~~~~ 146 (216)
+++|+...
T Consensus 112 iElAKSNt 119 (284)
T KOG1457|consen 112 IELAKSNT 119 (284)
T ss_pred eeehhcCc
Confidence 99987643
No 83
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.79 E-value=2.2e-08 Score=83.63 Aligned_cols=79 Identities=25% Similarity=0.350 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIK--------KIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDR 135 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~ 135 (216)
.++.|||.|||.++|-+++.++|+++|.|. .|++.++.. |+.+|=|.+.|-..+++.-|+..|++..+.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 456799999999999999999999999774 478888755 89999999999999999999999999999999
Q ss_pred eEEEEeeC
Q 037453 136 PIRVDFDW 143 (216)
Q Consensus 136 ~l~V~~a~ 143 (216)
.|+|+.|.
T Consensus 212 ~~rVerAk 219 (382)
T KOG1548|consen 212 KLRVERAK 219 (382)
T ss_pred EEEEehhh
Confidence 99999984
No 84
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=1.3e-08 Score=89.63 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=65.7
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIR 138 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 138 (216)
.....+|+|-|||.++++++|+.+|+.||+|+.|+.- ...+|.+||+|.|..+|++|+++|++..+.|++|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3467899999999999999999999999999997653 34679999999999999999999999999999888
No 85
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.73 E-value=1.1e-08 Score=82.08 Aligned_cols=81 Identities=17% Similarity=0.302 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
....+||.|.|.-+++.+.|-..|.+|-.-...++++|+.||+++||+||.|.+..++..|+.+|+|..++.++|+++.+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 46789999999999999999999999987788899999999999999999999999999999999999999999988866
Q ss_pred C
Q 037453 143 W 143 (216)
Q Consensus 143 ~ 143 (216)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 3
No 86
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.72 E-value=1.4e-07 Score=66.19 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=68.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhc--cCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC----CeeEEE
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSR--AGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD----DRPIRV 139 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~--~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~----g~~l~V 139 (216)
+||.|.|+|-..|.++|.+++.. .|...-+.++.|..++.+.|||||.|.+++.|.+-.+.++|.... .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988864 367778899999999999999999999999999999999998775 356677
Q ss_pred EeeC
Q 037453 140 DFDW 143 (216)
Q Consensus 140 ~~a~ 143 (216)
.+|+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7774
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.67 E-value=4.9e-08 Score=86.39 Aligned_cols=147 Identities=19% Similarity=0.222 Sum_probs=103.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.....+||++||...++.+++++...||.+....++.|..+|.++||||.+|.++.-...|+..|||..++++.|.|..|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCC----CCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHh-------hhcCCCCccccccc
Q 037453 143 WGFQDGRQWGRG----RSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAF-------NSFGGGDAYKSVNH 211 (216)
Q Consensus 143 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F-------~~fG~~~~~~~~~~ 211 (216)
............ ...+-..........+...+- +-|..+-.+++++ ++..+|. ++||.+..+.+.-.
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~-L~n~Vt~deLkdd-~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLC-LTNVVTPDELKDD-EEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhh-hhhcCCHHHhcch-HHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 654332221111 000000000000001111222 4455555677776 5555554 46887777665543
No 88
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=2.7e-08 Score=78.37 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|+...++|+-|.++|-+.|.|..|.|..++.. +.+ ||||.|.++.++.-|++.|||..+.++.+.|.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~-~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ-EQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC-CCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 4689999999999999999999999999999999877654 345 99999999999999999999999999998888754
Q ss_pred C
Q 037453 144 G 144 (216)
Q Consensus 144 ~ 144 (216)
+
T Consensus 86 G 86 (267)
T KOG4454|consen 86 G 86 (267)
T ss_pred C
Confidence 4
No 89
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.55 E-value=1.4e-07 Score=85.28 Aligned_cols=82 Identities=22% Similarity=0.389 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeec---CCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLD---KNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d---~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 139 (216)
+..+.|||+||++.++++.|-..|..||+|..++|+.- -+....+-|+||-|-+..+|++|++.|+|..+.+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 45689999999999999999999999999999888643 233456789999999999999999999999999999999
Q ss_pred EeeCC
Q 037453 140 DFDWG 144 (216)
Q Consensus 140 ~~a~~ 144 (216)
-|++.
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 99843
No 90
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=4e-07 Score=72.57 Aligned_cols=72 Identities=25% Similarity=0.388 Sum_probs=64.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...+.+.|.+++..+.+.+|.+.|.++|.+....+ ..+++||+|.+.++|..|++.+++..+.++.|.+...
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 46789999999999999999999999999854443 4579999999999999999999999999999999554
No 91
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.25 E-value=2e-06 Score=72.39 Aligned_cols=83 Identities=20% Similarity=0.259 Sum_probs=75.7
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIK--------KIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD 133 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~ 133 (216)
.....+|||-+||..+++++|.++|.++|.|. .|.+-+|++|++++|-|.|.|.+...|++|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34678999999999999999999999999874 4677889999999999999999999999999999999999
Q ss_pred CeeEEEEeeCC
Q 037453 134 DRPIRVDFDWG 144 (216)
Q Consensus 134 g~~l~V~~a~~ 144 (216)
+..|+|..|..
T Consensus 143 gn~ikvs~a~~ 153 (351)
T KOG1995|consen 143 GNTIKVSLAER 153 (351)
T ss_pred CCCchhhhhhh
Confidence 99999998853
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.24 E-value=5.6e-06 Score=55.88 Aligned_cols=68 Identities=24% Similarity=0.299 Sum_probs=47.7
Q ss_pred cEEEEcCCCCCCCHHHH----HHHhhccC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 66 TTVYVGNMSFYTTEEQI----YELFSRAG-EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l----~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
..|+|.|||.+.+...| +.++..+| .|..| ..+-|+|.|.+++.|.+|.+.|+|..+-|.+|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 57999999999998665 55666775 55554 24789999999999999999999999999999999
Q ss_pred eeC
Q 037453 141 FDW 143 (216)
Q Consensus 141 ~a~ 143 (216)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 974
No 93
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.24 E-value=1.2e-06 Score=73.44 Aligned_cols=83 Identities=25% Similarity=0.424 Sum_probs=74.8
Q ss_pred CCcEEE-EcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 64 ASTTVY-VGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 64 ~~~~l~-V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++| |++|+..+++++|+..|..+|.|..++++.++.++..+|||||+|.+...+..++.. +...+.++++.+...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 345555 999999999999999999999999999999999999999999999999999999986 789999999999998
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+.+.
T Consensus 262 ~~~~~ 266 (285)
T KOG4210|consen 262 EPRPK 266 (285)
T ss_pred CCCcc
Confidence 76443
No 94
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.22 E-value=3.6e-06 Score=73.45 Aligned_cols=77 Identities=27% Similarity=0.350 Sum_probs=65.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKK-IIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
....|-+.+||+.+|++||.++|+..--+.. |.++.|+. +++.|-|||+|++.+.|++|+. -+...|+.+.|.|..+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 5678999999999999999999998743433 55666654 5688999999999999999999 6778999999999887
No 95
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.11 E-value=3.1e-06 Score=67.08 Aligned_cols=66 Identities=24% Similarity=0.381 Sum_probs=54.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD 133 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~ 133 (216)
.-.+|||.||.+.+||++|+.+|+.|-....++|-. ......||++|++.+.|..|+..|+|..|.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 346899999999999999999999997666665521 124468999999999999999999987663
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.00 E-value=1.6e-05 Score=56.83 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=43.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc-----eeCCeeEEEE
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGT-----ILDDRPIRVD 140 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~-----~l~g~~l~V~ 140 (216)
+.|.|.+++..++.++|++.|++||.|..|.+... ..-|||.|.++++|++|+..+... .+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 56889999999999999999999999999888542 347899999999999999876543 4555555555
Q ss_pred e
Q 037453 141 F 141 (216)
Q Consensus 141 ~ 141 (216)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 97
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=7.6e-05 Score=65.75 Aligned_cols=127 Identities=20% Similarity=0.288 Sum_probs=76.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCC---CCCccc---EEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKN---SKTPCG---FCFALFYSREDTEDAVKYISGTILDDRPI 137 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~---tg~~~g---~afV~F~~~~~a~~Al~~l~g~~l~g~~l 137 (216)
-++.||||+||++++|+.|...|..||.+. |.++.... --.++| |+|+.|+++.++.+-|.++.- ....+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 468999999999999999999999999864 55553111 112456 999999999998888776543 33333
Q ss_pred EEEeeCCCCCCCC-----C--CCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhh-hcCCC
Q 037453 138 RVDFDWGFQDGRQ-----W--GRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFN-SFGGG 203 (216)
Q Consensus 138 ~V~~a~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~-~fG~~ 203 (216)
.+..+.+.-+... . .... -..+ .....++.+.|+ |+.+ ...... +.|..+|. -||++
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~---fv~d-~sq~lDprrTVF-VGgv---prpl~A-~eLA~imd~lyGgV 398 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSD---FVLD-HNQPIDPRRTVF-VGGL---PRPLTA-EELAMIMEDLFGGV 398 (520)
T ss_pred EEEEecCcccccceeEEeeEeccch---hhhc-cCcccCccceEE-ecCC---CCcchH-HHHHHHHHHhcCce
Confidence 3333332211110 0 0000 0001 112233444555 5554 344666 88999999 58874
No 98
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.87 E-value=6.7e-05 Score=59.65 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=67.0
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC-CeeEEEE
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD-DRPIRVD 140 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~-g~~l~V~ 140 (216)
.++...+|+.|||.+++.+.+..+|.+|.....++++.. -.+.|||+|.+...|..|...+++..+- ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC-----CCceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 567789999999999999999999999998899988764 3589999999999999999999998876 6677777
Q ss_pred eeC
Q 037453 141 FDW 143 (216)
Q Consensus 141 ~a~ 143 (216)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 653
No 99
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.73 E-value=0.00011 Score=66.92 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=65.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
+.|-+.|+|++++-+||.++|..|-.+-.-.+++-.+.|...|-|-|.|++.++|.+|...|++..|..+.+.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4888999999999999999999996554333333346688999999999999999999999999999999988764
No 100
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.0001 Score=65.63 Aligned_cols=77 Identities=25% Similarity=0.399 Sum_probs=63.7
Q ss_pred CCcEEEEcCCCCCCCH------HHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC-ee
Q 037453 64 ASTTVYVGNMSFYTTE------EQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDD-RP 136 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te------~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g-~~ 136 (216)
-...|+|.|+|.--.. .-|.++|+++|+|+...++.+..+| .+||.|++|.+..+|+.|++.|||+.|+- +.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4578999999864322 2366889999999999999988777 89999999999999999999999988864 56
Q ss_pred EEEEe
Q 037453 137 IRVDF 141 (216)
Q Consensus 137 l~V~~ 141 (216)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66654
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.72 E-value=9.7e-05 Score=62.05 Aligned_cols=78 Identities=23% Similarity=0.454 Sum_probs=60.8
Q ss_pred CcEEEEcCCCCCCCHHH----H--HHHhhccCCeeEEEEeecCCCCC-ccc--EEEEEecCHHHHHHHHHHhCCceeCCe
Q 037453 65 STTVYVGNMSFYTTEEQ----I--YELFSRAGEIKKIIMGLDKNSKT-PCG--FCFALFYSREDTEDAVKYISGTILDDR 135 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~----l--~~~F~~~G~i~~v~i~~d~~tg~-~~g--~afV~F~~~~~a~~Al~~l~g~~l~g~ 135 (216)
..-+||-+||+.+..++ | .++|.+||.|..|.+-+...+-. ..+ -.||+|.+.++|.+||.+.+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999877665 3 37899999999887754321111 112 239999999999999999999999999
Q ss_pred eEEEEee
Q 037453 136 PIRVDFD 142 (216)
Q Consensus 136 ~l~V~~a 142 (216)
.|+..+-
T Consensus 194 ~lkatYG 200 (480)
T COG5175 194 VLKATYG 200 (480)
T ss_pred eEeeecC
Confidence 9998886
No 102
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.71 E-value=3.5e-05 Score=62.28 Aligned_cols=73 Identities=16% Similarity=0.312 Sum_probs=62.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCC--------CCccc----EEEEEecCHHHHHHHHHHhCCce
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNS--------KTPCG----FCFALFYSREDTEDAVKYISGTI 131 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t--------g~~~g----~afV~F~~~~~a~~Al~~l~g~~ 131 (216)
....||+++||+.++..-|+++|+.||+|-+|.+.....+ |.++. -|-|+|.+-..|.+....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999999776544 33333 25699999999999999999999
Q ss_pred eCCee
Q 037453 132 LDDRP 136 (216)
Q Consensus 132 l~g~~ 136 (216)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 103
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.70 E-value=3.5e-05 Score=64.88 Aligned_cols=75 Identities=15% Similarity=0.342 Sum_probs=65.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAG--EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
-.+|||||-|.+|+++|.+.....| .+.++++..++.+|+++|||+|...+..+.++.++.|.-+.|.|+.-.|-
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 4799999999999999999887766 56778888889999999999999999999999999999999988654443
No 104
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.56 E-value=0.00023 Score=44.33 Aligned_cols=52 Identities=27% Similarity=0.372 Sum_probs=41.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAV 124 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al 124 (216)
+.|-|.+.+++..+ .+...|..||+|..+.+.. .....+|.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 46778888877664 4555888999999988852 3458999999999999985
No 105
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.51 E-value=0.00025 Score=63.25 Aligned_cols=143 Identities=23% Similarity=0.372 Sum_probs=96.4
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHhhcc-----------C-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 037453 59 EEALLASTTVYVGNMSFYTTEEQIYELFSRA-----------G-EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126 (216)
Q Consensus 59 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~-----------G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~ 126 (216)
.........+||+++|+.++++....+|..- | .+..+.+.. .+.|||++|.+.++|..|+.
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~~- 241 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAMA- 241 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhhc-
Confidence 3344567899999999999999999888643 2 244444432 46799999999999999998
Q ss_pred hCCceeCCeeEEEEeeCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcC
Q 037453 127 ISGTILDDRPIRVDFDWGFQDGRQWGR-----GRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFG 201 (216)
Q Consensus 127 l~g~~l~g~~l~V~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG 201 (216)
+++..+.|.++++..-..........- +..+.........+....+.+.++|.. .++ .++.|+-..||
T Consensus 242 ~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~------l~~-~q~~Ell~~fg 314 (500)
T KOG0120|consen 242 LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLY------LTE-DQVKELLDSFG 314 (500)
T ss_pred ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCc------cCH-HHHHHHHHhcc
Confidence 899999999888776543322111100 011111111111111222455556665 777 88999999999
Q ss_pred CCCccccccccccC
Q 037453 202 GGDAYKSVNHLICG 215 (216)
Q Consensus 202 ~~~~~~~~~~~~~~ 215 (216)
...+|..+....+|
T Consensus 315 ~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 315 PLKAFRLVKDSATG 328 (500)
T ss_pred cchhheeecccccc
Confidence 99999998887765
No 106
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.51 E-value=0.00028 Score=60.64 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=65.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCe-eEEEEe
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDR-PIRVDF 141 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~-~l~V~~ 141 (216)
++..+|.+.|+|.+++||+|+..|..-|-........ ++.+-+|++.+.+.++|-.|+..++.+.+++. .|+|++
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 6678999999999999999999999887665443322 33567999999999999999999999999875 899999
Q ss_pred eCC
Q 037453 142 DWG 144 (216)
Q Consensus 142 a~~ 144 (216)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 863
No 107
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.48 E-value=4.2e-05 Score=65.92 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=57.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeec---CCCC--C--------cccEEEEEecCHHHHHHHHHHhCC
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLD---KNSK--T--------PCGFCFALFYSREDTEDAVKYISG 129 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d---~~tg--~--------~~g~afV~F~~~~~a~~Al~~l~g 129 (216)
.++++|.+.|||.+-.-+.|.++|+.+|.|..|+|+.- +... . .+-+|+|+|+..+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47899999999999999999999999999999999764 2221 1 256899999999999999997765
Q ss_pred ce
Q 037453 130 TI 131 (216)
Q Consensus 130 ~~ 131 (216)
..
T Consensus 309 e~ 310 (484)
T KOG1855|consen 309 EQ 310 (484)
T ss_pred hh
Confidence 43
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00038 Score=61.50 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=60.9
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 037453 61 ALLASTTVYVGNMSFYTTEEQIYELFS-RAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKY 126 (216)
Q Consensus 61 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~ 126 (216)
..++.+|||||+||.-++.++|..+|. -||.|.-+-|-.|++-+-++|-|-|+|.+..+-.+||.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 356789999999999999999999998 699999999999988888999999999999999999983
No 109
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.41 E-value=0.00079 Score=56.79 Aligned_cols=79 Identities=23% Similarity=0.388 Sum_probs=63.7
Q ss_pred cCCCcEEEEcCC--C--CCCC-------HHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc
Q 037453 62 LLASTTVYVGNM--S--FYTT-------EEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGT 130 (216)
Q Consensus 62 ~~~~~~l~V~nL--p--~~~t-------e~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~ 130 (216)
....++|.+.|+ | ...+ +++|++-..+||.|..|.+.- ..+.|.+-|.|.+.++|..||+.|+|.
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 345689999988 2 2333 255667788999999987643 246799999999999999999999999
Q ss_pred eeCCeeEEEEeeCC
Q 037453 131 ILDDRPIRVDFDWG 144 (216)
Q Consensus 131 ~l~g~~l~V~~a~~ 144 (216)
.++|+.|..+...+
T Consensus 338 ~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 338 WFDGRQLTASIWDG 351 (382)
T ss_pred eecceEEEEEEeCC
Confidence 99999999998753
No 110
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.39 E-value=0.0001 Score=63.61 Aligned_cols=111 Identities=17% Similarity=0.228 Sum_probs=80.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC-ceeCCeeEEEEeeC
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAG-EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG-TILDDRPIRVDFDW 143 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g-~~l~g~~l~V~~a~ 143 (216)
..+|++||.+.++..+|+.+|...- ....-.++ ..||+||+..+...|.+|++.++| ..+.|.++.|..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4689999999999999999997541 11111122 348999999999999999999998 57899999999886
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 144 GFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.+-. .+ ...+.|+|.- ... +.|-.+..+||....+..++
T Consensus 75 ~kkqr---------------sr-----k~Qirnippq------l~w-evld~Ll~qyg~ve~~eqvn 114 (584)
T KOG2193|consen 75 PKKQR---------------SR-----KIQIRNIPPQ------LQW-EVLDSLLAQYGTVENCEQVN 114 (584)
T ss_pred hHHHH---------------hh-----hhhHhcCCHH------HHH-HHHHHHHhccCCHhHhhhhc
Confidence 43211 11 1455566665 333 46677888899887776554
No 111
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.31 E-value=0.0013 Score=46.48 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=51.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEE-EeecC------CCCCcccEEEEEecCHHHHHHHHHHhCCceeCCe-
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKII-MGLDK------NSKTPCGFCFALFYSREDTEDAVKYISGTILDDR- 135 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~-i~~d~------~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~- 135 (216)
..+-|.|-+.|+. ....|.+.|++||+|.+.. +.++. ........-.|+|.++.+|.+||. .||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3466788899988 5577888999999997764 11110 001234688999999999999999 899999885
Q ss_pred eEEEEee
Q 037453 136 PIRVDFD 142 (216)
Q Consensus 136 ~l~V~~a 142 (216)
.+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 5557665
No 112
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.30 E-value=0.0031 Score=48.98 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=57.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD 133 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~ 133 (216)
....+|.|.+||++.++++|+++..+-|+|....+.+| |.+.|+|-..++.+-|+..|+...+.
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 35678999999999999999999999999998888776 58999999999999999999876554
No 113
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.25 E-value=0.00046 Score=58.99 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCC-ee--EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGE-IK--KIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~--~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
....|-+.+||++++.++|..+|..|-. |. .|.++.+ ..|++.|-|||+|.+.++|.+|....+.+..+.+.|.|-
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 3568899999999999999999998863 33 3778776 457889999999999999999999888777789999998
Q ss_pred eeC
Q 037453 141 FDW 143 (216)
Q Consensus 141 ~a~ 143 (216)
.+.
T Consensus 358 p~S 360 (508)
T KOG1365|consen 358 PCS 360 (508)
T ss_pred ecc
Confidence 774
No 114
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.22 E-value=0.0018 Score=48.51 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=52.8
Q ss_pred cCCCcEEEEcCCCC------CCCH---HHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee
Q 037453 62 LLASTTVYVGNMSF------YTTE---EQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTIL 132 (216)
Q Consensus 62 ~~~~~~l~V~nLp~------~~te---~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l 132 (216)
.++..+|.|.=+.+ ...+ .+|.+.|..||++.-++++- +.-.|+|.+-++|.+|+. ++|..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCcEE
Confidence 34667777765551 2222 25778899999998888754 355899999999999999 999999
Q ss_pred CCeeEEEEeeCC
Q 037453 133 DDRPIRVDFDWG 144 (216)
Q Consensus 133 ~g~~l~V~~a~~ 144 (216)
+|+.|.|+...+
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999998653
No 115
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.18 E-value=2.2e-05 Score=72.66 Aligned_cols=71 Identities=25% Similarity=0.323 Sum_probs=59.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDD 134 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g 134 (216)
+...++||.||+..+.+++|...|..+|.+..+.+.-...+++.+|+||++|..++++.+||. ++...+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~-f~d~~~~g 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA-FRDSCFFG 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh-hhhhhhhh
Confidence 345789999999999999999999999988777666556778899999999999999999999 45444444
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.13 E-value=0.00039 Score=64.67 Aligned_cols=79 Identities=15% Similarity=0.158 Sum_probs=70.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCC
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWG 144 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 144 (216)
...|+|.|.|+..|.++++.++..+|.+++.+++.. ..|+++|.|+|.|.++.++.+++..++...+.-..+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 468999999999999999999999999999887765 4588999999999999999999998888888888888888765
No 117
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.08 E-value=0.003 Score=53.98 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=68.1
Q ss_pred cCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 62 LLASTTVYVGNMSFY-TTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
..+.+.+.|-+|.-. ++-+.|-.+|-.||.|.+|++++.+ .|-|.|++.+..+.++|+..||+..+-|.+|.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 346789999999865 6678899999999999999998753 4789999999999999999999999999999999
Q ss_pred eeC
Q 037453 141 FDW 143 (216)
Q Consensus 141 ~a~ 143 (216)
+++
T Consensus 359 ~Sk 361 (494)
T KOG1456|consen 359 VSK 361 (494)
T ss_pred ecc
Confidence 885
No 118
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.06 E-value=0.0014 Score=56.19 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=59.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcc----CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRA----GEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
.-.|-..+||+++++.++.++|.+- |....|.++. +..|+..|-|||.|..+++|+.||. -|...++-|.|.+-
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~-rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT-RPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE-CCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHH
Confidence 4567788999999999999999632 2445565555 3457889999999999999999998 57677777776665
Q ss_pred ee
Q 037453 141 FD 142 (216)
Q Consensus 141 ~a 142 (216)
.+
T Consensus 239 RS 240 (508)
T KOG1365|consen 239 RS 240 (508)
T ss_pred HH
Confidence 54
No 119
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.95 E-value=0.00034 Score=65.42 Aligned_cols=118 Identities=19% Similarity=0.310 Sum_probs=84.1
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 61 ALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 61 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
......+||+|||+..+++.+|+..|..+|.|..|.|-+-+ -+.---|+||.|.+...+-.|...+.+..|..-.+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 34567899999999999999999999999999998885432 22334689999999999999999898877766555555
Q ss_pred eeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCcc
Q 037453 141 FDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAY 206 (216)
Q Consensus 141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~ 206 (216)
+..+ ... ....++ +..++.| ... ..|...|..||-+..+
T Consensus 447 lG~~----------------kst------~ttr~~-sgglg~w---~p~-~~l~r~fd~fGpir~I 485 (975)
T KOG0112|consen 447 LGQP----------------KST------PTTRLQ-SGGLGPW---SPV-SRLNREFDRFGPIRII 485 (975)
T ss_pred cccc----------------ccc------cceeec-cCCCCCC---ChH-HHHHHHhhccCcceee
Confidence 4321 000 111223 3444334 444 6788999999987653
No 120
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.94 E-value=0.0079 Score=51.50 Aligned_cols=78 Identities=12% Similarity=0.187 Sum_probs=62.2
Q ss_pred CCCcEEEEcCC--CCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC-C-eeEE
Q 037453 63 LASTTVYVGNM--SFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD-D-RPIR 138 (216)
Q Consensus 63 ~~~~~l~V~nL--p~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~-g-~~l~ 138 (216)
..++.|.+.=| -+.+|.+.|..+..+.|.|.+|.|.+. +| --|.|+|++.+.|++|..+|||..|- | -.|+
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLK 192 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLK 192 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEE
Confidence 45566666544 456899999999999999999988762 22 35899999999999999999997763 3 6899
Q ss_pred EEeeCCC
Q 037453 139 VDFDWGF 145 (216)
Q Consensus 139 V~~a~~~ 145 (216)
|++|++.
T Consensus 193 IeyAkP~ 199 (494)
T KOG1456|consen 193 IEYAKPT 199 (494)
T ss_pred EEecCcc
Confidence 9999753
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.80 E-value=0.0017 Score=60.88 Aligned_cols=76 Identities=20% Similarity=0.296 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC--eeEEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDD--RPIRVD 140 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g--~~l~V~ 140 (216)
...+.+++++|++++....|...|..||.|..|.+- +..-||+|.|++...|+.|+..|.|..|++ ++++|.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 456899999999999999999999999999987662 234699999999999999999999999987 789999
Q ss_pred eeCC
Q 037453 141 FDWG 144 (216)
Q Consensus 141 ~a~~ 144 (216)
++..
T Consensus 527 la~~ 530 (975)
T KOG0112|consen 527 LASP 530 (975)
T ss_pred cccC
Confidence 9854
No 122
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.68 E-value=0.0066 Score=50.37 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=51.4
Q ss_pred HHHHHHhhccCCeeEEEEeecCCCCCccc-EEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 80 EQIYELFSRAGEIKKIIMGLDKNSKTPCG-FCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 80 ~~l~~~F~~~G~i~~v~i~~d~~tg~~~g-~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
+++++.+.+||.|..|.|..++..-...- --||+|...++|-+|+--|||..++|+.+...+-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 56788899999999998876654333333 3699999999999999999999999998876664
No 123
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.62 E-value=0.0029 Score=53.12 Aligned_cols=79 Identities=23% Similarity=0.169 Sum_probs=66.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC-ceeCCeeEEEEee
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG-TILDDRPIRVDFD 142 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g-~~l~g~~l~V~~a 142 (216)
..+++|++++.+.+.+.++..++..+|.+....+........++|++++.|...+.+..|+. +.+ ..+.+..+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 56899999999999999899999999988888777767778899999999999999999999 555 5666666665555
Q ss_pred C
Q 037453 143 W 143 (216)
Q Consensus 143 ~ 143 (216)
.
T Consensus 166 ~ 166 (285)
T KOG4210|consen 166 T 166 (285)
T ss_pred c
Confidence 4
No 124
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.59 E-value=0.0011 Score=53.77 Aligned_cols=61 Identities=21% Similarity=0.413 Sum_probs=49.1
Q ss_pred HHHHHhh-ccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 81 QIYELFS-RAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 81 ~l~~~F~-~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
++...|+ +||+|..+.+..+. .-...|-+||.|...++|++|++.||+..+.|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3334444 89999888665432 2245788999999999999999999999999999999887
No 125
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.40 E-value=0.024 Score=36.26 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=44.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcc---CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRA---GEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l 127 (216)
...|+|.++. +++.++|+.+|..| .....|.++-|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4678999984 57889999999988 235678888773 5789999999999999864
No 126
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.95 E-value=0.0099 Score=48.40 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=62.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC----ceeCCeeEEEE
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG----TILDDRPIRVD 140 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g----~~l~g~~l~V~ 140 (216)
...|||.||+.-++-+.++..|+.||+|....+..| ..+++.+-++|.|...-.|.+|+..++- ....+++.-|.
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 388999999999999999999999999987666555 3467788899999999999999998753 34455666666
Q ss_pred ee
Q 037453 141 FD 142 (216)
Q Consensus 141 ~a 142 (216)
..
T Consensus 110 P~ 111 (275)
T KOG0115|consen 110 PM 111 (275)
T ss_pred hh
Confidence 54
No 127
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.81 E-value=0.037 Score=37.51 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=42.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYIS 128 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~ 128 (216)
....+|. .|..+...||.++|++||.|. |.++-| .-|||...+.+.|..|+..++
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 3566775 999999999999999999875 555544 479999999999999998776
No 128
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.74 E-value=0.03 Score=43.72 Aligned_cols=80 Identities=21% Similarity=0.201 Sum_probs=50.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhc-cCCe---eEEEEeecC-CCC-CcccEEEEEecCHHHHHHHHHHhCCceeCC---
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSR-AGEI---KKIIMGLDK-NSK-TPCGFCFALFYSREDTEDAVKYISGTILDD--- 134 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i---~~v~i~~d~-~tg-~~~g~afV~F~~~~~a~~Al~~l~g~~l~g--- 134 (216)
....|.|++||+.+|++++.+.+++ ++.- ..+.-.... ... ....-|||.|.+.+++..-...++|+.+-+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999999987776 5554 233211211 111 223569999999999999999999977643
Q ss_pred --eeEEEEeeC
Q 037453 135 --RPIRVDFDW 143 (216)
Q Consensus 135 --~~l~V~~a~ 143 (216)
.+..|++|-
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 355677764
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.63 E-value=0.0097 Score=54.70 Aligned_cols=78 Identities=19% Similarity=0.105 Sum_probs=64.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKK-IIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
....|||..||..+++.++.++|...-.|++ |.|.+ ..+++.++-|||.|..++++..|...-..+.++.+.|+|.-.
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~-~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR-LPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEecc-CCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 4679999999999999999999998767776 55555 456778899999999999998888866667777788888764
No 130
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.61 E-value=0.024 Score=48.83 Aligned_cols=77 Identities=21% Similarity=0.297 Sum_probs=61.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCC---CCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKN---SKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~---tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
...|-|.||.+.+|.+++..+|.-.|.|..+.+..+.. -....-.|||.|.+...+..|-- |....+-++.|.|-.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 35899999999999999999999999999988765321 12345689999999999888866 777888787777766
Q ss_pred e
Q 037453 142 D 142 (216)
Q Consensus 142 a 142 (216)
.
T Consensus 86 ~ 86 (479)
T KOG4676|consen 86 Y 86 (479)
T ss_pred c
Confidence 5
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.56 E-value=0.0054 Score=51.72 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=59.9
Q ss_pred CcEEEEcCCCCCCCHH-HHH--HHhhccCCeeEEEEeecCC--CCC-cccEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 037453 65 STTVYVGNMSFYTTEE-QIY--ELFSRAGEIKKIIMGLDKN--SKT-PCGFCFALFYSREDTEDAVKYISGTILDDRPIR 138 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~-~l~--~~F~~~G~i~~v~i~~d~~--tg~-~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 138 (216)
..-+||-+|+.....+ .|+ +.|.+||.|..|.+..++. .+. .-.-++|+|...++|..||...+|..+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3567888998876544 444 5799999999998877662 111 112379999999999999999999999998877
Q ss_pred EEee
Q 037453 139 VDFD 142 (216)
Q Consensus 139 V~~a 142 (216)
..+.
T Consensus 157 a~~g 160 (327)
T KOG2068|consen 157 ASLG 160 (327)
T ss_pred HhhC
Confidence 6665
No 132
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.30 E-value=0.022 Score=51.56 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=61.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee---CCeeEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSR-AGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTIL---DDRPIR 138 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l---~g~~l~ 138 (216)
..++.|+|.||-.-.|.-+|++++.. .|.|... .+|+ -+..|||.|.+.++|.+...+|+|... +++.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 46789999999999999999999984 5666655 3443 567999999999999999999999654 457888
Q ss_pred EEeeC
Q 037453 139 VDFDW 143 (216)
Q Consensus 139 V~~a~ 143 (216)
+.|..
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 88874
No 133
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.17 E-value=0.12 Score=38.58 Aligned_cols=74 Identities=12% Similarity=0.076 Sum_probs=55.7
Q ss_pred cCCCcEEEEcCCCCCCCH-HHH---HHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 037453 62 LLASTTVYVGNMSFYTTE-EQI---YELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPI 137 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te-~~l---~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l 137 (216)
.++..+|.|.=|...+.. +|+ ...++.||+|.+|.+. .+--|.|.|.+..+|-+|+.++.. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 346678888876666543 444 4556789999998763 345899999999999999998875 6677778
Q ss_pred EEEeeC
Q 037453 138 RVDFDW 143 (216)
Q Consensus 138 ~V~~a~ 143 (216)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 887754
No 134
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.72 E-value=0.13 Score=40.50 Aligned_cols=61 Identities=21% Similarity=0.190 Sum_probs=45.6
Q ss_pred CHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC--CceeCCeeEEEEeeCC
Q 037453 78 TEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYIS--GTILDDRPIRVDFDWG 144 (216)
Q Consensus 78 te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~--g~~l~g~~l~V~~a~~ 144 (216)
..+.|+++|..++.+.....++ +-+-..|.|.+.++|.+|...|+ +..+.|..++|-++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 3478999999999988877765 34567899999999999999999 8999999999999843
No 135
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.62 E-value=0.25 Score=32.66 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHhhccC-----CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 75 FYTTEEQIYELFSRAG-----EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 75 ~~~te~~l~~~F~~~G-----~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
..++..+|..++...+ .|-.|.+.. .|+||+-.. +.|+.++..|++..+.|++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4578888988887664 345677733 489999864 5889999999999999999999875
No 136
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.68 E-value=0.58 Score=33.61 Aligned_cols=67 Identities=12% Similarity=0.132 Sum_probs=48.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRA-GEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDD 134 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g 134 (216)
..+-+...|..++.++|..+.+.+ ..|..++|++|.. .++=.+.+.|.+.++|..-...+||+.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444445555566776665554 3567889988743 355679999999999999999999987765
No 137
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.77 E-value=0.082 Score=46.69 Aligned_cols=74 Identities=18% Similarity=0.278 Sum_probs=59.8
Q ss_pred CCcEEEEcCCCCCCC-HHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 64 ASTTVYVGNMSFYTT-EEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 64 ~~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
+.+.|-+.-.|+... .++|...|.+||+|..|.+-.. --.|.|+|.+..+|-.|-. ..+..|+++.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 456666666677654 5789999999999999987443 2468999999999977766 7899999999999998
Q ss_pred CC
Q 037453 143 WG 144 (216)
Q Consensus 143 ~~ 144 (216)
.+
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 65
No 138
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.09 E-value=1.2 Score=28.86 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=42.9
Q ss_pred CCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 037453 76 YTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139 (216)
Q Consensus 76 ~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 139 (216)
.++-++++..+..|+ ..+|.. |+ .|| ||.|.+..+|+++....+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~--d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRD--DR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEe--cC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467789999999995 444443 31 244 89999999999999999999888877654
No 139
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.98 E-value=0.28 Score=44.34 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=56.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc--cCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC--ceeCCeeEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSR--AGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG--TILDDRPIR 138 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~--~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g--~~l~g~~l~ 138 (216)
...|.|.+.-||..+-.|+++.+|.. +-.+++|.+..+. -=||+|++..||+.|.+.|.. +.|.|++|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34578899999999999999999974 5677888775531 238999999999999987764 567777765
Q ss_pred EEe
Q 037453 139 VDF 141 (216)
Q Consensus 139 V~~ 141 (216)
.++
T Consensus 246 ARI 248 (684)
T KOG2591|consen 246 ARI 248 (684)
T ss_pred hhh
Confidence 544
No 140
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.83 E-value=0.083 Score=48.43 Aligned_cols=73 Identities=22% Similarity=0.359 Sum_probs=63.5
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 61 ALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 61 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
..++.-++||+|+...+..+-++.+...+|-|..+..+. |||..|..+.....|+..++-..++|..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 345778999999999999999999999999887765432 99999999999999999999899999888877
Q ss_pred ee
Q 037453 141 FD 142 (216)
Q Consensus 141 ~a 142 (216)
..
T Consensus 107 ~d 108 (668)
T KOG2253|consen 107 VD 108 (668)
T ss_pred ch
Confidence 64
No 141
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.64 E-value=0.38 Score=43.35 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=57.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee---CC-eeEE
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFS-RAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTIL---DD-RPIR 138 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l---~g-~~l~ 138 (216)
..+++.|.|+|-..|-..|.+.-. ..|.-..+.++.|..+..+.|||||.|.+++++..+.+++||+.. .+ +.+.
T Consensus 387 ~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~ 466 (549)
T KOG4660|consen 387 PRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIAS 466 (549)
T ss_pred chhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeee
Confidence 345566666666655554444422 356666788899988899999999999999999999999999643 33 4456
Q ss_pred EEeeC
Q 037453 139 VDFDW 143 (216)
Q Consensus 139 V~~a~ 143 (216)
+.||+
T Consensus 467 itYAr 471 (549)
T KOG4660|consen 467 ITYAR 471 (549)
T ss_pred eehhh
Confidence 66664
No 142
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.59 E-value=0.15 Score=48.17 Aligned_cols=74 Identities=20% Similarity=0.183 Sum_probs=61.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee--CCeeEEEEee
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTIL--DDRPIRVDFD 142 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l--~g~~l~V~~a 142 (216)
..+.++.|.+-..+-..|..+|+.||.|.+.+.++|- ..|.|+|.+.+.|-.|+.+++|..+ -|-+.+|.+|
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 3445566666677788899999999999999988863 4899999999999999999999765 5778999998
Q ss_pred CC
Q 037453 143 WG 144 (216)
Q Consensus 143 ~~ 144 (216)
+.
T Consensus 372 k~ 373 (1007)
T KOG4574|consen 372 KT 373 (1007)
T ss_pred cc
Confidence 64
No 143
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.97 E-value=1.4 Score=37.04 Aligned_cols=70 Identities=27% Similarity=0.288 Sum_probs=51.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCe-eEEEEee
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDR-PIRVDFD 142 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~-~l~V~~a 142 (216)
..=|-|-+.|+.-. .-|..+|++||+|...... . .-.+-+|.|.+.-+|.+||. .||..|+|. .|-|...
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~---ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---S---NGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC---C---CCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 34455557777643 5577889999999876553 2 33588999999999999999 899999885 4455553
No 144
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=88.79 E-value=0.12 Score=32.76 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=22.7
Q ss_pred cccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 174 LLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 174 v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
|.|+|.. .++ ++|+++|++||.........
T Consensus 3 v~nlp~~------~t~-~~l~~~f~~~g~i~~~~~~~ 32 (70)
T PF00076_consen 3 VGNLPPD------VTE-EELRDFFSQFGKIESIKVMR 32 (70)
T ss_dssp EESETTT------SSH-HHHHHHHHTTSTEEEEEEEE
T ss_pred EcCCCCc------CCH-HHHHHHHHHhhhcccccccc
Confidence 4455554 777 89999999999997766554
No 145
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.78 E-value=1.4 Score=38.99 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=57.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRA-GEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDD 134 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g 134 (216)
.+..|+|=.+|-.++-.||..|...+ -.|.++++++|.. .++=..+|.|.+.++|..-.+.+||..+..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37889999999999999999998765 4688999999643 233457899999999999999999987765
No 146
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=88.48 E-value=0.063 Score=46.85 Aligned_cols=74 Identities=14% Similarity=0.276 Sum_probs=61.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEE-eecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIM-GLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
++.+-|.|+|+...++.|..+...||.+..|.. .+|++| ...-|+|...+.+..||..++|..+....++|.+-
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 355889999999999999999999999988754 344433 23457889999999999999999999999988875
No 147
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=87.00 E-value=0.63 Score=35.00 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=25.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.||+.. .++ ++|+++|.+||.+..++++.+
T Consensus 37 lfVgnL~~~------~te-~~L~~~F~~~G~I~~v~i~~d 69 (144)
T PLN03134 37 LFIGGLSWG------TDD-ASLRDAFAHFGDVVDAKVIVD 69 (144)
T ss_pred EEEeCCCCC------CCH-HHHHHHHhcCCCeEEEEEEec
Confidence 455555554 777 899999999999988887754
No 148
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.48 E-value=4.8 Score=36.84 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=58.9
Q ss_pred cCCCcEEEEcCCCCC-CCHHHHHHHhhcc----CCeeEEEEeec----------CCCCC---------------------
Q 037453 62 LLASTTVYVGNMSFY-TTEEQIYELFSRA----GEIKKIIMGLD----------KNSKT--------------------- 105 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~d----------~~tg~--------------------- 105 (216)
....++|-|-|+.|+ +...+|..+|+.| |.|.+|.|... ..+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345689999999997 7789999988765 57888877431 11121
Q ss_pred ---------------cc-cEEEEEecCHHHHHHHHHHhCCceeCCe--eEEEEe
Q 037453 106 ---------------PC-GFCFALFYSREDTEDAVKYISGTILDDR--PIRVDF 141 (216)
Q Consensus 106 ---------------~~-g~afV~F~~~~~a~~Al~~l~g~~l~g~--~l~V~~ 141 (216)
.+ =||.|+|.+.+.|.+..+.++|..+... .|.+++
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 01 1688999999999999999999988764 444444
No 149
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=76.23 E-value=3.9 Score=34.26 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=38.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCe-eEEEEeecCCCCCcccEEEEEecCHHH
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEI-KKIIMGLDKNSKTPCGFCFALFYSRED 119 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~d~~tg~~~g~afV~F~~~~~ 119 (216)
...-||++|||.++.-.+|+..+.+.|.+ .++.| ..+.|-||+.|.+...
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRKG 379 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCccC
Confidence 44679999999999999999999887643 34544 2367889999987643
No 150
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=76.14 E-value=3.4 Score=33.99 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHH
Q 037453 117 REDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEA 196 (216)
Q Consensus 117 ~~~a~~Al~~l~g~~l~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~ 196 (216)
...|+.|..+|++....|+.|+|.++-. ..+.|.|+... +.. +.|.+.
T Consensus 4 rt~ae~ak~eLd~~~~~~~~lr~rfa~~-------------------------a~l~V~nl~~~------~sn-dll~~~ 51 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFPKGRSLRVRFAMH-------------------------AELYVVNLMQG------ASN-DLLEQA 51 (275)
T ss_pred ccHHHHHHHhcCCCCCCCCceEEEeecc-------------------------ceEEEEecchh------hhh-HHHHHh
Confidence 4467778888999999999999999842 11566666554 555 678999
Q ss_pred hhhcCCCCc
Q 037453 197 FNSFGGGDA 205 (216)
Q Consensus 197 F~~fG~~~~ 205 (216)
|.+||.++.
T Consensus 52 f~~fg~~e~ 60 (275)
T KOG0115|consen 52 FRRFGPIER 60 (275)
T ss_pred hhhcCccch
Confidence 999998765
No 151
>smart00362 RRM_2 RNA recognition motif.
Probab=74.98 E-value=1.6 Score=26.92 Aligned_cols=31 Identities=23% Similarity=0.140 Sum_probs=21.2
Q ss_pred ccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 173 LLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 173 ~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
.+.|+|.. .+. .+|+++|.+||.........
T Consensus 3 ~i~~l~~~------~~~-~~l~~~~~~~g~v~~~~~~~ 33 (72)
T smart00362 3 FVGNLPPD------VTE-EDLKELFSKFGPIESVKIPK 33 (72)
T ss_pred EEcCCCCc------CCH-HHHHHHHHhcCCEEEEEEec
Confidence 34555544 555 78999999999876655443
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=71.96 E-value=0.57 Score=40.67 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=52.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD 133 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~ 133 (216)
..+++|++|+..+...++-+.|..+|+|...++.. +...-+|-|+|........|+. ++|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 47899999999999999999999999998777743 3344577799999999999998 6666554
No 153
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=71.49 E-value=11 Score=24.47 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=43.7
Q ss_pred HHHHHHhhccC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 80 EQIYELFSRAG-EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 80 ~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
++|++.|...| .|..+.-+..+.++.+...-||+.....+... .++=..|++..+.|+..+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 56777887776 67777777777677777888998876555333 355577888888888654
No 154
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=70.71 E-value=2.2 Score=36.57 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=30.2
Q ss_pred CchhccccchhhHHHhhhcCCCCccccccccccCC
Q 037453 182 CWSDVVNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 182 s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
.|.+.+.+ .++++.|-+||++.++.++.+..|.|
T Consensus 235 ~l~d~v~e-~dIrdhFyqyGeirsi~~~~~~~CAF 268 (377)
T KOG0153|consen 235 GLNDEVLE-QDIRDHFYQYGEIRSIRILPRKGCAF 268 (377)
T ss_pred ccccchhH-HHHHHHHhhcCCeeeEEeecccccce
Confidence 34667888 89999999999999999999999987
No 155
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=70.42 E-value=1.6 Score=35.16 Aligned_cols=72 Identities=26% Similarity=0.346 Sum_probs=59.3
Q ss_pred CCcEEEEcC----CCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCee
Q 037453 64 ASTTVYVGN----MSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRP 136 (216)
Q Consensus 64 ~~~~l~V~n----Lp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~ 136 (216)
...+++.|+ |...++++.+...|+.-|.+..+++.++.. |+++.++|+++......-.++....+..+--++
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~ 154 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQKK 154 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcCCCC
Confidence 457788888 888899999999999999999999988766 778999999998888888888877665544433
No 156
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=69.22 E-value=12 Score=24.49 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=43.9
Q ss_pred HHHHHHhhccC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 80 EQIYELFSRAG-EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 80 ~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
++|++.|...| ++..++-+..+.++.+...-+|+.....+... .++=..|+|+++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888887 67788877777777777788888775544333 355577889888887653
No 157
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=68.25 E-value=2.1 Score=27.21 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=21.2
Q ss_pred cccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 174 LLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 174 v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|+|.. .++ ++|++.|+.||.+..+....+
T Consensus 3 i~nlp~~------~~~-~~l~~~f~~~g~v~~v~~~~~ 33 (70)
T PF14259_consen 3 ISNLPPS------TTE-EDLRNFFSRFGPVEKVRLIKN 33 (70)
T ss_dssp EESSTTT--------H-HHHHHHCTTSSBEEEEEEEES
T ss_pred EeCCCCC------CCH-HHHHHHHHhcCCcceEEEEee
Confidence 4556654 677 889999999998766665544
No 158
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=67.05 E-value=3.4 Score=34.79 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=26.9
Q ss_pred hccccchhhHHHhhhcCCCCccccccccccCC
Q 037453 185 DVVNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 185 ~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
...++ ..|++.|..||.++.+..|.++.+|.
T Consensus 111 ydT~E-skLrreF~~YG~IkrirlV~d~vTgk 141 (335)
T KOG0113|consen 111 YDTSE-SKLRREFEKYGPIKRIRLVRDKVTGK 141 (335)
T ss_pred ccccH-HHHHHHHHhcCcceeEEEeeecccCC
Confidence 33667 88999999999999999999988873
No 159
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.97 E-value=16 Score=32.22 Aligned_cols=55 Identities=15% Similarity=0.101 Sum_probs=46.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCe-eEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEI-KKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~ 125 (216)
-.+.|=|-++|.....+||...|..|+.- -+|.|+-| -.+|..|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhh
Confidence 56889999999999999999999999743 56777765 389999999999999998
No 160
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=63.81 E-value=3.3 Score=39.18 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=28.7
Q ss_pred hhccccchhhHHHhhhcCCCCccccccccccCC
Q 037453 184 SDVVNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 184 ~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
...+.+ .+|..+|+.||.+.++.-.+...|+|
T Consensus 430 ~k~v~e-~dL~~~feefGeiqSi~li~~R~cAf 461 (894)
T KOG0132|consen 430 PKNVTE-QDLANLFEEFGEIQSIILIPPRGCAF 461 (894)
T ss_pred cchhhH-HHHHHHHHhcccceeEeeccCCceeE
Confidence 455777 99999999999999999999999987
No 161
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=63.77 E-value=69 Score=30.19 Aligned_cols=69 Identities=9% Similarity=0.063 Sum_probs=50.4
Q ss_pred cEEEEc-CCCCCCCHHHHHHHhhccCCe-----eEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 037453 66 TTVYVG-NMSFYTTEEQIYELFSRAGEI-----KKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139 (216)
Q Consensus 66 ~~l~V~-nLp~~~te~~l~~~F~~~G~i-----~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 139 (216)
.++||. +--..++..+|..++..-+.| -.|.|. ..|.||+.. .+.|...+..|++..+.|++|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELP-KGMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcC-hhhHHHHHHHhccccccCCceEE
Confidence 456663 224568888888888765544 345553 248899976 45688899999999999999999
Q ss_pred EeeC
Q 037453 140 DFDW 143 (216)
Q Consensus 140 ~~a~ 143 (216)
+.+.
T Consensus 558 ~~~~ 561 (629)
T PRK11634 558 QLLG 561 (629)
T ss_pred EECC
Confidence 9874
No 162
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=62.78 E-value=4.7 Score=28.70 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=26.3
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHLI 213 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~ 213 (216)
+.+.|+|.. ++. ++.-++|++||.+.-+++-+...
T Consensus 21 LyirNLp~~------ITs-eemydlFGkyg~IrQIRiG~~k~ 55 (124)
T KOG0114|consen 21 LYIRNLPFK------ITS-EEMYDLFGKYGTIRQIRIGNTKE 55 (124)
T ss_pred EEEecCCcc------ccH-HHHHHHhhcccceEEEEecCccC
Confidence 455666664 666 77899999999998888776654
No 163
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=61.16 E-value=9.9 Score=31.18 Aligned_cols=36 Identities=14% Similarity=0.004 Sum_probs=25.2
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHLIC 214 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~ 214 (216)
+.|.||+.. .++ .+|+++|..||.+-..-..-+..+
T Consensus 192 vRvtNLsed------~~E-~dL~eLf~~fg~i~rvylardK~T 227 (270)
T KOG0122|consen 192 VRVTNLSED------MRE-DDLEELFRPFGPITRVYLARDKET 227 (270)
T ss_pred eEEecCccc------cCh-hHHHHHhhccCccceeEEEEcccc
Confidence 566666554 788 899999999999766544444333
No 164
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=60.90 E-value=4.8 Score=29.75 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=20.1
Q ss_pred cccchhhHHHhhhcCCCCcc----ccccccccCC
Q 037453 187 VNISFHRTEAFNSFGGGDAY----KSVNHLICGW 216 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~~----~~~~~~~~~~ 216 (216)
..| +++-|+|+++|.+..+ ..-+.-.|||
T Consensus 48 ttE-EqiyELFs~cG~irriiMGLdr~kktpCGF 80 (153)
T KOG0121|consen 48 TTE-EQIYELFSKCGDIRRIIMGLDRFKKTPCGF 80 (153)
T ss_pred ecH-HHHHHHHHhccchheeEeccccCCcCccce
Confidence 666 9999999999987542 2223345665
No 165
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=59.37 E-value=8.4 Score=32.95 Aligned_cols=33 Identities=9% Similarity=-0.020 Sum_probs=26.5
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. --+ .+|+..|.+||.+-++.|+-+
T Consensus 99 LhVSNIPFr------FRd-pDL~aMF~kfG~VldVEIIfN 131 (376)
T KOG0125|consen 99 LHVSNIPFR------FRD-PDLRAMFEKFGKVLDVEIIFN 131 (376)
T ss_pred eEeecCCcc------ccC-ccHHHHHHhhCceeeEEEEec
Confidence 788888886 444 689999999999988887643
No 166
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=57.73 E-value=26 Score=22.35 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=15.4
Q ss_pred HHHHHHhhccCCeeEEEE
Q 037453 80 EQIYELFSRAGEIKKIIM 97 (216)
Q Consensus 80 ~~l~~~F~~~G~i~~v~i 97 (216)
.+|+++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999977665
No 167
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=55.97 E-value=2.8 Score=32.83 Aligned_cols=48 Identities=8% Similarity=0.123 Sum_probs=33.7
Q ss_pred CCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCccccccccccC
Q 037453 163 EYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHLICG 215 (216)
Q Consensus 163 ~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~ 215 (216)
.+-..|..+..++ ++++ +...++ -++--+|++||.+.++..+-+..+|
T Consensus 27 SWH~~YkdsA~Iy-iggl---~~~LtE-gDil~VFSqyGe~vdinLiRDk~TG 74 (219)
T KOG0126|consen 27 SWHQEYKDSAYIY-IGGL---PYELTE-GDILCVFSQYGEIVDINLIRDKKTG 74 (219)
T ss_pred chhhhcccceEEE-ECCC---cccccC-CcEEEEeeccCceEEEEEEecCCCC
Confidence 3444555555666 5655 444777 7888899999999888777766665
No 168
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=55.90 E-value=19 Score=28.37 Aligned_cols=62 Identities=29% Similarity=0.445 Sum_probs=42.5
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHH
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDA 123 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~A 123 (216)
......+++.+++..++...+...|..+|.+....+.............++.+.....+..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALES 283 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhh
Confidence 34568999999999999999999999999997776655443333334444444433333333
No 169
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=55.13 E-value=15 Score=26.52 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=30.5
Q ss_pred cEEEEcCCCCC---------CCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEec-CHHHHHHHHH
Q 037453 66 TTVYVGNMSFY---------TTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFY-SREDTEDAVK 125 (216)
Q Consensus 66 ~~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~-~~~~a~~Al~ 125 (216)
.++.|-|+|-. .+.++|++.|+.|..+. ++.+.++. .+.|++.|.|. +-.--..|+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 34556666443 34578999999997764 66666544 47899999997 4445555555
No 170
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=51.41 E-value=12 Score=31.01 Aligned_cols=118 Identities=19% Similarity=0.125 Sum_probs=67.6
Q ss_pred CcEEEEcCCCCCCCHHH-H--HHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 65 STTVYVGNMSFYTTEEQ-I--YELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~-l--~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
--..+++++-..+..+- | ...|+.+-.+....++++.. +..++++|+.|.....-.++-..-+++.++-.++++.-
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 34566777766665554 3 56677766666666666644 45789999999877777766665566666666544332
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCC
Q 037453 142 DWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGG 202 (216)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~ 202 (216)
...-.. +.-.++.. .+..+...-++|. ++. +.|...|.+|-.
T Consensus 175 gtswed-----------Psl~ew~~-~DfRIfcgdlgNe------vnd-~vl~raf~Kfps 216 (290)
T KOG0226|consen 175 GTSWED-----------PSLAEWDE-DDFRIFCGDLGNE------VND-DVLARAFKKFPS 216 (290)
T ss_pred ccccCC-----------cccccCcc-ccceeeccccccc------ccH-HHHHHHHHhccc
Confidence 211100 11111111 1111333334444 677 789999998754
No 171
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=48.71 E-value=17 Score=28.52 Aligned_cols=75 Identities=13% Similarity=0.075 Sum_probs=53.3
Q ss_pred CCcEEEEcCCCCCCCH-----HHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCe-eE
Q 037453 64 ASTTVYVGNMSFYTTE-----EQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDR-PI 137 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te-----~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~-~l 137 (216)
-..++.+.+++..+-. .....+|.+|.+.....+++ +.+..-|.|.+++.|..|...++...+.|. .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 3456777777765432 23445677666555444443 445667899999999999999999999988 78
Q ss_pred EEEeeCC
Q 037453 138 RVDFDWG 144 (216)
Q Consensus 138 ~V~~a~~ 144 (216)
+.-++.+
T Consensus 83 k~yfaQ~ 89 (193)
T KOG4019|consen 83 KLYFAQP 89 (193)
T ss_pred EEEEccC
Confidence 8888764
No 172
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=42.78 E-value=5.4 Score=36.37 Aligned_cols=75 Identities=12% Similarity=0.076 Sum_probs=54.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIR 138 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 138 (216)
..++||+.|+++.++-.+|..++..+--...+.+-.+-.......+..|+|.---....|+.+||+..+....+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~s 304 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLS 304 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccc
Confidence 457899999999999999999998875444444432222223456778999877788888888998777655443
No 173
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=42.21 E-value=32 Score=29.09 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=23.5
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 110 CFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 110 afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
|||+|.+..+|..|++.+....- ..+.++.|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCC
Confidence 79999999999999995544332 445666663
No 174
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=40.65 E-value=1.1e+02 Score=20.64 Aligned_cols=55 Identities=9% Similarity=0.015 Sum_probs=39.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 037453 68 VYVGNMSFYTTEEQIYELFSR-AG-EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125 (216)
Q Consensus 68 l~V~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~ 125 (216)
-|+--++..++..+|++.++. || .|..|..+.-+. ..-=|||++....+|.....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHH
Confidence 444467889999999998886 55 566776655331 23359999998888877654
No 175
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=40.31 E-value=47 Score=24.40 Aligned_cols=119 Identities=9% Similarity=-0.078 Sum_probs=68.3
Q ss_pred CCcEEEEcCCC--CCCCHHHHHHHhh----ccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 037453 64 ASTTVYVGNMS--FYTTEEQIYELFS----RAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPI 137 (216)
Q Consensus 64 ~~~~l~V~nLp--~~~te~~l~~~F~----~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l 137 (216)
......|+.+. ...+-..|...+. ..|.+.-..+ ..++..+.|.+.+++.+++. .....+++..+
T Consensus 14 ~~~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l--------~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~ 84 (153)
T PF14111_consen 14 RWQLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL--------GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFL 84 (153)
T ss_pred hcCeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe--------CCCeEEEEEEeccceeEEEe-cccccccccch
Confidence 33445566552 2355555655554 3344333333 34789999999999999987 45567788777
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCccccc
Q 037453 138 RVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSV 209 (216)
Q Consensus 138 ~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~ 209 (216)
.++.-.+.... ...... ....=+.+.++|. ...++ ..+.++-+.+|..-.+...
T Consensus 85 ~l~~W~~~~~~-----------~~~~~~-~~~vWVri~glP~-----~~~~~-~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 85 ILQRWSPDFNP-----------SEVKFE-HIPVWVRIYGLPL-----HLWSE-EILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hhhhhcccccc-----------ccccee-ccchhhhhccCCH-----HHhhh-HHHHHHHHhcCCeEEEEcC
Confidence 77765432111 000000 0001145566665 34566 7788999999987665544
No 176
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=36.37 E-value=68 Score=21.50 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.4
Q ss_pred cccEEEEEecCHHHHHHHHHHhCCc
Q 037453 106 PCGFCFALFYSREDTEDAVKYISGT 130 (216)
Q Consensus 106 ~~g~afV~F~~~~~a~~Al~~l~g~ 130 (216)
.+||-||+=.+..++..|++.+.+.
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 6899999999999999999877653
No 177
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=36.15 E-value=62 Score=27.38 Aligned_cols=78 Identities=18% Similarity=0.206 Sum_probs=56.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCC-------CCCcccEEEEEecCHHHHHHH----HHHhCC--ce
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKN-------SKTPCGFCFALFYSREDTEDA----VKYISG--TI 131 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~-------tg~~~g~afV~F~~~~~a~~A----l~~l~g--~~ 131 (216)
.+.|.+.|+..+++--.+...|..||+|++|.++.+.. .-+......+.|-+.+.+..- ++.|+. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 46677889999998888888999999999999987641 112335678889888876543 333332 46
Q ss_pred eCCeeEEEEee
Q 037453 132 LDDRPIRVDFD 142 (216)
Q Consensus 132 l~g~~l~V~~a 142 (216)
+....|.|.+.
T Consensus 95 L~S~~L~lsFV 105 (309)
T PF10567_consen 95 LKSESLTLSFV 105 (309)
T ss_pred cCCcceeEEEE
Confidence 67777887775
No 178
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=35.44 E-value=25 Score=26.32 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=23.2
Q ss_pred hhccccchhhHHHhhhcCCCCccccccccccCC
Q 037453 184 SDVVNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 184 ~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
.+..++ +++.+.|..||.++++-.--+..+||
T Consensus 81 HeEatE-edi~d~F~dyGeiKNihLNLDRRtGy 112 (170)
T KOG0130|consen 81 HEEATE-EDIHDKFADYGEIKNIHLNLDRRTGY 112 (170)
T ss_pred CcchhH-HHHHHHHhhcccccceeecccccccc
Confidence 444777 89999999999998875544444443
No 179
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=33.00 E-value=21 Score=31.44 Aligned_cols=61 Identities=15% Similarity=0.068 Sum_probs=49.2
Q ss_pred CcEEEEcCCCCCCCHH--------HHHHHhhc--cCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 037453 65 STTVYVGNMSFYTTEE--------QIYELFSR--AGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~--------~l~~~F~~--~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~ 125 (216)
.+.+|+.+.+...+.+ ++...|.+ .+.+..+.+-+|.....++|-.|++|.....|++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4677888877665544 89999998 6677788888877677788999999999999998874
No 180
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=32.07 E-value=1.6e+02 Score=19.62 Aligned_cols=56 Identities=7% Similarity=-0.005 Sum_probs=38.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 037453 67 TVYVGNMSFYTTEEQIYELFSR-AG-EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125 (216)
Q Consensus 67 ~l~V~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~ 125 (216)
.-|+-.++..++..+|++.++. || .|..|..+.-+. ..-=|||++.....|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 3456678899999999998886 55 556665544331 23359999988777776544
No 181
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=31.71 E-value=1e+02 Score=21.05 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=31.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEec
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFY 115 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~ 115 (216)
...-||||+++..+.+.-...+.+..++-.-+-+..+. ...||+|-+..
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~---neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN---NEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC---CCCCEEEEEeC
Confidence 45779999999888877666666554443333333322 26689998874
No 182
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=31.65 E-value=50 Score=27.76 Aligned_cols=66 Identities=18% Similarity=0.369 Sum_probs=42.0
Q ss_pred CcEEEEcCCCCC------------CCHHHHHHHhhccCCeeEEEEee-c----CCCCCc-----ccEE---------EEE
Q 037453 65 STTVYVGNMSFY------------TTEEQIYELFSRAGEIKKIIMGL-D----KNSKTP-----CGFC---------FAL 113 (216)
Q Consensus 65 ~~~l~V~nLp~~------------~te~~l~~~F~~~G~i~~v~i~~-d----~~tg~~-----~g~a---------fV~ 113 (216)
+-+||+.+||-. -+++-|+..|..||+|..|.|+. | ..+|+. .||+ ||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 468888888742 35678999999999999887753 2 234433 3343 344
Q ss_pred ecCHHHHHHHHHHhCCc
Q 037453 114 FYSREDTEDAVKYISGT 130 (216)
Q Consensus 114 F~~~~~a~~Al~~l~g~ 130 (216)
|..-..-..|+.+|.|.
T Consensus 229 fmeykgfa~amdalr~~ 245 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGM 245 (445)
T ss_pred HHHHHhHHHHHHHHhcc
Confidence 44444455566666664
No 183
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=31.10 E-value=38 Score=19.09 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHhhccC
Q 037453 75 FYTTEEQIYELFSRAG 90 (216)
Q Consensus 75 ~~~te~~l~~~F~~~G 90 (216)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678999999998764
No 184
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=30.26 E-value=32 Score=23.60 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHh
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELF 86 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F 86 (216)
..++|-|.|||...++++|++..
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 56899999999999999998654
No 185
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=29.83 E-value=72 Score=20.57 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=21.2
Q ss_pred cEEEEEecCHHHHHHHHHHhCCceeC
Q 037453 108 GFCFALFYSREDTEDAVKYISGTILD 133 (216)
Q Consensus 108 g~afV~F~~~~~a~~Al~~l~g~~l~ 133 (216)
.+.+|.|.+..+|.+|-+.|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 36799999999999998877765553
No 186
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=29.30 E-value=91 Score=27.31 Aligned_cols=69 Identities=23% Similarity=0.244 Sum_probs=46.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEeecCCC--CCcccEEEEEecCHHHHHHHHHHhCCcee
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGE-IKKIIMGLDKNS--KTPCGFCFALFYSREDTEDAVKYISGTIL 132 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~d~~t--g~~~g~afV~F~~~~~a~~Al~~l~g~~l 132 (216)
....|.|.+||+..+++++.+-..++-. +....+.....+ ....+.+||.|..+++...-...++|+.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 4577889999999999998877766531 222222211000 12357899999999998877777787554
No 187
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=24.73 E-value=63 Score=26.46 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=26.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIK 93 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~ 93 (216)
....+||+-|+|...|++.|.++.++.|-+.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq 68 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQ 68 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhh
Confidence 3568899999999999999999999888544
No 188
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.29 E-value=13 Score=33.02 Aligned_cols=78 Identities=6% Similarity=-0.187 Sum_probs=58.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCC
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWG 144 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 144 (216)
.+.|+..+|-..+++++.-.|..||.|..+..-+--..+...-.+|++-.. .++..+|..+.-..+.|..++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 345677888899999999999999998877765543444455567887654 466777777777788888888888753
No 189
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=22.84 E-value=1.4e+02 Score=20.91 Aligned_cols=50 Identities=26% Similarity=0.255 Sum_probs=30.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYS 116 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~ 116 (216)
...-||||+++..+.+.-...+-+.++.-.-+-+..+. ...||+|-++.+
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~---~eqG~~~~t~G~ 75 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATN---TESGFEFQTFGE 75 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCC---CCCCcEEEecCC
Confidence 45779999988887765544444445443333333322 234999988765
No 190
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=22.61 E-value=91 Score=29.78 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=25.4
Q ss_pred CCcccccCCCCCCchhccccchhhHHHhhhcCCCCccccc
Q 037453 170 PDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSV 209 (216)
Q Consensus 170 ~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~ 209 (216)
.++.+.|++.. +++ +.|-..|+.||.+.++++.
T Consensus 175 TNlyv~Nlnps------v~E-~~ll~tfGrfgPlasvKim 207 (877)
T KOG0151|consen 175 TNLYVGNLNPS------VDE-NFLLRTFGRFGPLASVKIM 207 (877)
T ss_pred cceeeecCCcc------ccH-HHHHHHhcccCcccceeee
Confidence 34555555554 888 9999999999999888765
No 191
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=21.59 E-value=99 Score=25.72 Aligned_cols=33 Identities=12% Similarity=0.311 Sum_probs=24.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEE
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIM 97 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i 97 (216)
.....|+|||+.+|..-|.+++...-.+....+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 356679999999999999999876544434333
No 192
>PRK11901 hypothetical protein; Reviewed
Probab=20.67 E-value=2.3e+02 Score=24.42 Aligned_cols=60 Identities=7% Similarity=0.084 Sum_probs=38.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEE--EEEecCHHHHHHHHHHhCC
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFC--FALFYSREDTEDAVKYISG 129 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~a--fV~F~~~~~a~~Al~~l~g 129 (216)
.-+|-|.. ..+++.|..|...++ +..+++..-..+|+ ..|. |-.|.+.++|..|+..|..
T Consensus 245 ~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 245 HYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCH
Confidence 34454443 456888888888775 44455544333332 2444 3479999999999998874
No 193
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=20.46 E-value=1.3e+02 Score=28.13 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=17.9
Q ss_pred hhhHHHhhhcCCCCcccccccc
Q 037453 191 FHRTEAFNSFGGGDAYKSVNHL 212 (216)
Q Consensus 191 ~~l~~~F~~fG~~~~~~~~~~~ 212 (216)
.+|+.+|++||.+..-+-|.+.
T Consensus 420 tDLKnlFSKyGKVvGAKVVTNa 441 (940)
T KOG4661|consen 420 TDLKNLFSKYGKVVGAKVVTNA 441 (940)
T ss_pred hHHHHHHHHhcceeceeeeecC
Confidence 7899999999998777666543
Done!