Query 037453
Match_columns 216
No_of_seqs 281 out of 2458
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 21:27:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_Z 20 kDa nuclear CAP bind 99.9 1.2E-24 4E-29 165.7 12.7 133 43-175 17-149 (156)
2 4fxv_A ELAV-like protein 1; RN 99.9 2.1E-23 7.3E-28 147.2 11.7 83 62-144 16-98 (99)
3 4f02_A Polyadenylate-binding p 99.9 7.5E-23 2.6E-27 163.2 10.8 124 64-210 14-137 (213)
4 1fxl_A Paraneoplastic encephal 99.9 3.8E-22 1.3E-26 151.8 13.0 121 65-210 2-122 (167)
5 1b7f_A Protein (SXL-lethal pro 99.9 3.8E-22 1.3E-26 152.2 12.3 123 64-211 2-124 (168)
6 1l3k_A Heterogeneous nuclear r 99.9 3.4E-22 1.2E-26 156.3 11.5 129 63-211 11-139 (196)
7 3s8s_A Histone-lysine N-methyl 99.9 6.8E-22 2.3E-26 142.1 12.1 82 63-144 4-85 (110)
8 2lxi_A RNA-binding protein 10; 99.9 1.2E-22 4E-27 141.2 7.8 82 65-146 1-84 (91)
9 2dnz_A Probable RNA-binding pr 99.9 1.4E-21 4.7E-26 136.3 12.9 85 63-147 3-87 (95)
10 1x5t_A Splicing factor 3B subu 99.9 1.6E-21 5.5E-26 136.2 11.5 84 64-147 4-88 (96)
11 1whw_A Hypothetical protein ri 99.9 2.8E-21 9.7E-26 135.8 12.6 85 63-147 6-90 (99)
12 2lkz_A RNA-binding protein 5; 99.9 5.2E-22 1.8E-26 139.0 8.5 82 63-144 7-94 (95)
13 1u6f_A Tcubp1, RNA-binding pro 99.9 1.9E-21 6.5E-26 145.0 12.0 86 63-148 40-125 (139)
14 3tyt_A Heterogeneous nuclear r 99.9 2.2E-21 7.5E-26 154.2 12.9 136 64-211 3-160 (205)
15 3md1_A Nuclear and cytoplasmic 99.9 3.3E-21 1.1E-25 130.9 12.0 80 66-145 2-81 (83)
16 2dgs_A DAZ-associated protein 99.9 3.8E-21 1.3E-25 135.2 12.5 84 63-147 8-91 (99)
17 1x5s_A Cold-inducible RNA-bind 99.9 2.2E-21 7.6E-26 137.0 11.3 86 63-148 10-95 (102)
18 3md3_A Nuclear and cytoplasmic 99.9 1.9E-21 6.5E-26 147.7 11.7 122 66-211 1-122 (166)
19 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.9E-21 1E-25 132.4 11.5 81 64-144 5-85 (87)
20 2fy1_A RNA-binding motif prote 99.9 4.7E-21 1.6E-25 138.9 13.1 84 63-147 5-88 (116)
21 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2E-21 6.8E-26 137.3 10.7 86 63-148 10-95 (102)
22 2dnm_A SRP46 splicing factor; 99.9 2.1E-21 7.1E-26 137.5 10.7 85 63-147 11-95 (103)
23 1x5u_A Splicing factor 3B subu 99.9 3.3E-21 1.1E-25 136.9 11.7 86 63-148 13-98 (105)
24 2cq0_A Eukaryotic translation 99.9 3.7E-21 1.3E-25 136.2 11.9 85 63-147 13-97 (103)
25 2kn4_A Immunoglobulin G-bindin 99.9 2.4E-21 8.4E-26 147.3 11.6 141 6-146 2-151 (158)
26 2dgo_A Cytotoxic granule-assoc 99.9 1.4E-20 4.9E-25 135.8 14.8 85 63-147 13-97 (115)
27 4f25_A Polyadenylate-binding p 99.9 3.2E-21 1.1E-25 139.5 11.2 81 64-146 4-84 (115)
28 3ex7_B RNA-binding protein 8A; 99.9 1.4E-21 4.7E-26 143.3 9.2 86 63-148 20-105 (126)
29 2cpz_A CUG triplet repeat RNA- 99.9 5.1E-21 1.8E-25 138.2 12.0 85 63-147 23-107 (115)
30 3mdf_A Peptidyl-prolyl CIS-tra 99.9 3.9E-21 1.3E-25 131.2 10.7 81 63-143 5-85 (85)
31 3smz_A Protein raver-1, ribonu 99.9 7.8E-21 2.7E-25 157.3 14.5 175 3-210 42-219 (284)
32 2cpf_A RNA binding motif prote 99.9 4.6E-21 1.6E-25 134.4 11.1 85 63-147 3-90 (98)
33 3nmr_A Cugbp ELAV-like family 99.9 2.5E-21 8.6E-26 148.5 10.4 124 64-211 2-130 (175)
34 2x1f_A MRNA 3'-END-processing 99.9 6.3E-21 2.1E-25 133.4 11.4 82 64-145 1-82 (96)
35 2cqd_A RNA-binding region cont 99.9 1.2E-20 4.1E-25 136.4 13.2 85 63-148 15-99 (116)
36 1wi8_A EIF-4B, eukaryotic tran 99.9 7.5E-21 2.5E-25 134.9 11.6 84 63-148 13-97 (104)
37 2dgp_A Bruno-like 4, RNA bindi 99.9 6E-21 2.1E-25 135.7 11.1 85 63-147 11-98 (106)
38 2qfj_A FBP-interacting repress 99.9 1.9E-21 6.6E-26 154.2 9.5 139 59-211 22-160 (216)
39 1x4h_A RNA-binding protein 28; 99.8 9.1E-21 3.1E-25 135.8 12.0 85 63-147 13-103 (111)
40 3p5t_L Cleavage and polyadenyl 99.8 1.1E-21 3.7E-26 135.8 6.7 81 66-146 2-84 (90)
41 2dng_A Eukaryotic translation 99.8 1.4E-20 4.7E-25 133.3 12.5 83 63-147 13-95 (103)
42 2do4_A Squamous cell carcinoma 99.8 1.1E-20 3.7E-25 133.1 11.8 83 63-146 15-97 (100)
43 2cpe_A RNA-binding protein EWS 99.8 8.5E-21 2.9E-25 136.5 11.2 85 63-147 13-105 (113)
44 2d9p_A Polyadenylate-binding p 99.8 1.1E-20 3.9E-25 133.6 11.6 83 63-147 13-95 (103)
45 2div_A TRNA selenocysteine ass 99.8 7.8E-21 2.7E-25 133.5 10.6 83 63-145 7-94 (99)
46 2dhg_A TRNA selenocysteine ass 99.8 9.1E-21 3.1E-25 134.3 11.0 84 63-147 7-92 (104)
47 2cph_A RNA binding motif prote 99.8 1.3E-20 4.5E-25 134.1 11.7 85 63-147 13-99 (107)
48 2dnh_A Bruno-like 5, RNA bindi 99.8 1.8E-20 6.2E-25 133.0 12.1 84 63-147 13-99 (105)
49 2e5h_A Zinc finger CCHC-type a 99.8 1.1E-20 3.8E-25 131.4 10.6 81 63-143 14-94 (94)
50 1p27_B RNA-binding protein 8A; 99.8 1.1E-20 3.7E-25 134.4 10.5 83 63-145 21-103 (106)
51 2cqc_A Arginine/serine-rich sp 99.8 1.2E-20 4.1E-25 131.4 10.6 82 63-144 13-94 (95)
52 3ucg_A Polyadenylate-binding p 99.8 1.8E-20 6.2E-25 128.9 11.3 80 64-144 5-84 (89)
53 1oo0_B CG8781-PA, drosophila Y 99.8 1.2E-20 4E-25 135.2 10.5 84 63-146 24-107 (110)
54 4a8x_A RNA-binding protein wit 99.8 1.5E-20 5.1E-25 129.0 10.5 82 64-145 3-85 (88)
55 3s7r_A Heterogeneous nuclear r 99.8 2.2E-20 7.5E-25 128.1 11.4 80 62-142 8-87 (87)
56 2la6_A RNA-binding protein FUS 99.8 1.5E-20 5E-25 132.2 10.7 81 63-143 11-99 (99)
57 2cjk_A Nuclear polyadenylated 99.8 2.1E-21 7.2E-26 148.1 6.5 121 64-211 2-122 (167)
58 3ns6_A Eukaryotic translation 99.8 3.3E-21 1.1E-25 136.1 7.0 81 64-144 5-92 (100)
59 2jrs_A RNA-binding protein 39; 99.8 1.2E-20 4.2E-25 135.0 9.8 82 63-144 24-105 (108)
60 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.4E-20 2.2E-24 129.8 13.2 83 63-147 13-95 (103)
61 2dh8_A DAZ-associated protein 99.8 1.7E-20 5.7E-25 133.3 10.0 84 63-147 14-97 (105)
62 2do0_A HnRNP M, heterogeneous 99.8 9.3E-20 3.2E-24 131.2 14.0 83 63-146 13-95 (114)
63 1x4b_A Heterogeneous nuclear r 99.8 3.2E-20 1.1E-24 134.2 11.6 83 64-147 26-108 (116)
64 3pgw_A U1-A; protein-RNA compl 99.8 2.5E-20 8.6E-25 154.0 12.4 82 62-146 6-91 (282)
65 2rs2_A Musashi-1, RNA-binding 99.8 2.7E-20 9.3E-25 133.4 11.0 85 61-146 21-105 (109)
66 1x4c_A Splicing factor, argini 99.8 6.9E-20 2.3E-24 130.9 12.9 80 63-149 13-97 (108)
67 2dgx_A KIAA0430 protein; RRM d 99.8 4.2E-20 1.4E-24 129.3 11.3 81 63-146 7-91 (96)
68 2cq3_A RNA-binding protein 9; 99.8 9.5E-20 3.3E-24 128.9 13.2 83 63-147 13-95 (103)
69 2adc_A Polypyrimidine tract-bi 99.8 4.2E-20 1.4E-24 148.8 12.8 142 62-215 31-192 (229)
70 2khc_A Testis-specific RNP-typ 99.8 1.4E-20 4.7E-25 136.4 9.0 82 62-143 37-118 (118)
71 1qm9_A Polypyrimidine tract-bi 99.8 3.8E-20 1.3E-24 145.3 12.2 136 64-209 2-154 (198)
72 2m2b_A RNA-binding protein 10; 99.8 5.2E-21 1.8E-25 141.5 6.7 84 63-147 21-110 (131)
73 2cqp_A RNA-binding protein 12; 99.8 1.7E-20 5.7E-25 131.6 8.9 82 63-144 13-94 (98)
74 3ulh_A THO complex subunit 4; 99.8 4.8E-20 1.6E-24 131.3 11.4 81 62-143 26-106 (107)
75 2ywk_A Putative RNA-binding pr 99.8 4E-20 1.4E-24 128.8 10.8 80 63-143 14-93 (95)
76 2cqg_A TDP-43, TAR DNA-binding 99.8 9.2E-20 3.1E-24 129.0 12.7 83 63-147 13-95 (103)
77 3n9u_C Cleavage and polyadenyl 99.8 3.7E-20 1.3E-24 141.0 11.2 81 64-144 54-136 (156)
78 2dis_A Unnamed protein product 99.8 5.9E-20 2E-24 131.2 11.6 84 64-147 7-94 (109)
79 2hvz_A Splicing factor, argini 99.8 4.3E-20 1.5E-24 130.2 10.7 78 66-148 1-78 (101)
80 2dgv_A HnRNP M, heterogeneous 99.8 5.5E-20 1.9E-24 127.3 11.0 82 63-146 6-87 (92)
81 1x4a_A Splicing factor, argini 99.8 1.1E-19 3.8E-24 129.9 12.8 82 63-147 20-101 (109)
82 2jwn_A Embryonic polyadenylate 99.8 4.3E-20 1.5E-24 135.0 10.8 82 64-146 35-116 (124)
83 2kxn_B Transformer-2 protein h 99.8 2.4E-20 8.2E-25 137.7 9.2 84 62-145 43-126 (129)
84 1s79_A Lupus LA protein; RRM, 99.8 2.2E-20 7.4E-25 132.7 8.5 79 64-144 10-88 (103)
85 1wez_A HnRNP H', FTP-3, hetero 99.8 4.6E-20 1.6E-24 130.7 10.1 81 63-146 13-93 (102)
86 2ek1_A RNA-binding protein 12; 99.8 2.3E-20 7.8E-25 130.0 8.1 80 64-143 14-93 (95)
87 2lea_A Serine/arginine-rich sp 99.8 2.1E-20 7.3E-25 139.0 8.4 83 64-146 46-128 (135)
88 2mss_A Protein (musashi1); RNA 99.8 1.5E-20 5.3E-25 125.3 6.9 75 67-142 1-75 (75)
89 1x4e_A RNA binding motif, sing 99.8 1E-20 3.6E-25 129.2 6.1 81 63-143 3-83 (85)
90 1sjq_A Polypyrimidine tract-bi 99.8 6.4E-20 2.2E-24 130.2 10.2 78 63-146 14-93 (105)
91 2cpi_A CCR4-NOT transcription 99.8 6E-20 2.1E-24 131.9 10.1 84 63-146 13-102 (111)
92 1rk8_A CG8781-PA, CG8781-PA pr 99.8 6.8E-20 2.3E-24 140.6 11.0 85 63-147 70-154 (165)
93 1p1t_A Cleavage stimulation fa 99.8 4E-20 1.4E-24 130.9 8.9 83 64-146 7-89 (104)
94 2dgw_A Probable RNA-binding pr 99.8 1.8E-19 6E-24 124.7 11.8 80 63-145 8-87 (91)
95 2fc9_A NCL protein; structure 99.8 1.4E-19 4.9E-24 127.5 11.2 81 63-147 13-93 (101)
96 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.4E-20 8.3E-25 131.5 7.2 81 62-144 16-97 (100)
97 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.2E-20 7.5E-25 125.1 6.4 76 66-142 1-76 (77)
98 2fc8_A NCL protein; structure 99.8 1.8E-19 6.1E-24 127.2 11.3 82 63-147 13-94 (102)
99 2lcw_A RNA-binding protein FUS 99.7 1.3E-21 4.6E-26 141.5 0.0 87 62-148 4-98 (116)
100 2yh0_A Splicing factor U2AF 65 99.8 3.2E-19 1.1E-23 139.5 13.6 134 64-211 3-149 (198)
101 3r27_A HnRNP L, heterogeneous 99.8 1.5E-19 5.3E-24 127.1 10.3 77 62-144 18-96 (100)
102 2cq4_A RNA binding motif prote 99.8 1.2E-19 4.3E-24 130.7 9.9 80 64-144 24-103 (114)
103 2ki2_A SS-DNA binding protein 99.8 2E-20 6.7E-25 129.2 5.2 79 66-145 2-80 (90)
104 2kt5_A RNA and export factor-b 99.8 3.9E-19 1.3E-23 130.0 12.4 83 62-145 32-114 (124)
105 2cpy_A RNA-binding protein 12; 99.8 8.1E-20 2.8E-24 131.9 8.5 81 63-145 13-94 (114)
106 3lqv_A PRE-mRNA branch site pr 99.8 2E-19 7E-24 129.7 10.6 105 63-203 6-110 (115)
107 2dgu_A Heterogeneous nuclear r 99.8 5.9E-19 2E-23 124.9 12.8 79 63-149 9-87 (103)
108 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.8E-19 6.1E-24 134.1 10.5 81 62-142 60-140 (140)
109 1l3k_A Heterogeneous nuclear r 99.8 2.1E-19 7.1E-24 140.4 11.2 87 62-149 101-187 (196)
110 2dnq_A RNA-binding protein 4B; 99.8 4.8E-19 1.6E-23 122.3 11.8 77 63-147 6-82 (90)
111 1x4g_A Nucleolysin TIAR; struc 99.8 7.1E-19 2.4E-23 125.7 12.9 81 61-147 21-101 (109)
112 2wbr_A GW182, gawky, LD47780P; 99.8 1.9E-19 6.6E-24 122.9 9.3 74 64-143 6-79 (89)
113 1fje_B Nucleolin RBD12, protei 99.8 1.8E-20 6.1E-25 144.2 4.6 119 63-206 11-129 (175)
114 1wex_A Hypothetical protein (r 99.8 3.4E-19 1.2E-23 126.7 10.8 79 63-147 13-93 (104)
115 2cpx_A Hypothetical protein FL 99.8 5.6E-20 1.9E-24 132.5 6.7 85 63-147 23-107 (115)
116 1x4d_A Matrin 3; structural ge 99.8 1.8E-19 6.1E-24 127.6 9.0 78 63-146 13-93 (102)
117 2cq1_A PTB-like protein L; RRM 99.8 7.5E-19 2.6E-23 124.2 12.2 78 63-146 13-92 (101)
118 1x5o_A RNA binding motif, sing 99.8 3.4E-19 1.2E-23 128.2 10.7 81 63-144 23-111 (114)
119 3beg_B Splicing factor, argini 99.8 1.5E-19 5.1E-24 130.7 8.7 84 64-154 15-103 (115)
120 2g4b_A Splicing factor U2AF 65 99.8 4.1E-19 1.4E-23 135.9 11.6 116 64-211 3-129 (172)
121 2cpd_A Apobec-1 stimulating pr 99.8 5.4E-19 1.8E-23 124.2 11.2 78 62-147 12-91 (99)
122 2err_A Ataxin-2-binding protei 99.8 2E-19 6.9E-24 128.8 9.0 81 62-144 26-106 (109)
123 3sde_A Paraspeckle component 1 99.8 2E-19 6.7E-24 147.6 10.1 112 63-211 20-131 (261)
124 1wg5_A Heterogeneous nuclear r 99.8 4.5E-19 1.5E-23 125.9 10.6 80 63-144 13-93 (104)
125 2nlw_A Eukaryotic translation 99.8 2E-19 6.9E-24 127.9 8.6 79 64-144 14-99 (105)
126 1iqt_A AUF1, heterogeneous nuc 99.8 7E-20 2.4E-24 122.0 5.6 75 67-142 1-75 (75)
127 3md3_A Nuclear and cytoplasmic 99.8 2.1E-18 7.2E-23 130.8 14.5 81 63-143 85-165 (166)
128 2krb_A Eukaryotic translation 99.8 1E-19 3.4E-24 123.3 6.3 74 65-140 1-81 (81)
129 2ad9_A Polypyrimidine tract-bi 99.8 5.6E-19 1.9E-23 128.2 10.5 78 63-146 29-108 (119)
130 2kvi_A Nuclear polyadenylated 99.8 3.1E-19 1.1E-23 124.8 8.8 78 62-147 7-85 (96)
131 1fj7_A Nucleolin RBD1, protein 99.8 3.4E-20 1.1E-24 130.8 3.9 82 63-146 15-96 (101)
132 2qfj_A FBP-interacting repress 99.8 2.9E-18 1E-22 135.8 15.4 86 61-146 121-206 (216)
133 2jvr_A Nucleolar protein 3; RN 99.8 4.1E-19 1.4E-23 127.6 9.4 79 63-145 26-105 (111)
134 2dgt_A RNA-binding protein 30; 99.8 1.8E-18 6.3E-23 119.8 12.3 77 63-147 8-84 (92)
135 1why_A Hypothetical protein ri 99.8 8.1E-19 2.8E-23 122.8 10.4 78 63-146 15-94 (97)
136 2db1_A Heterogeneous nuclear r 99.8 4.2E-19 1.4E-23 128.9 9.1 80 63-144 15-97 (118)
137 2xnq_A Nuclear polyadenylated 99.8 1.4E-18 4.9E-23 121.8 11.5 76 61-144 18-94 (97)
138 2jvo_A Nucleolar protein 3; nu 99.8 9.3E-19 3.2E-23 125.2 10.7 78 61-146 27-104 (108)
139 3q2s_C Cleavage and polyadenyl 99.8 3.9E-19 1.3E-23 143.4 9.3 80 64-143 67-148 (229)
140 2a3j_A U1 small nuclear ribonu 99.8 9.3E-19 3.2E-23 128.8 10.4 80 63-145 27-110 (127)
141 2cpj_A Non-POU domain-containi 99.8 1.4E-18 4.8E-23 122.0 10.9 78 63-146 13-90 (99)
142 2dnp_A RNA-binding protein 14; 99.8 1.4E-18 4.7E-23 119.9 10.7 76 63-146 7-82 (90)
143 2hgl_A HNRPF protein, heteroge 99.8 3.6E-19 1.2E-23 132.4 8.3 79 63-143 42-123 (136)
144 2e5g_A U6 snRNA-specific termi 99.8 2.1E-18 7.1E-23 120.1 11.2 77 64-146 7-83 (94)
145 2cqh_A IGF-II mRNA-binding pro 99.8 8.5E-19 2.9E-23 121.7 9.2 78 63-147 6-85 (93)
146 1wel_A RNA-binding protein 12; 99.8 2.3E-19 7.9E-24 131.3 6.4 81 63-144 23-103 (124)
147 2hgn_A Heterogeneous nuclear r 99.8 1.3E-19 4.4E-24 135.3 4.9 83 62-147 43-125 (139)
148 2dnn_A RNA-binding protein 12; 99.8 1.4E-18 4.8E-23 124.5 9.9 76 65-143 16-91 (109)
149 2g4b_A Splicing factor U2AF 65 99.8 6.8E-19 2.3E-23 134.7 8.8 79 64-142 93-171 (172)
150 1fjc_A Nucleolin RBD2, protein 99.8 5.3E-19 1.8E-23 123.4 7.4 79 63-146 14-92 (96)
151 2ghp_A U4/U6 snRNA-associated 99.8 1E-18 3.5E-23 145.0 10.5 129 64-211 116-246 (292)
152 1wf1_A RNA-binding protein RAL 99.8 2.3E-18 8E-23 123.2 11.0 76 64-147 26-102 (110)
153 1nu4_A U1A RNA binding domain; 99.8 8.3E-19 2.8E-23 122.5 8.4 80 63-145 6-89 (97)
154 1x4f_A Matrin 3; structural ge 99.8 4.4E-19 1.5E-23 127.5 7.1 79 62-146 22-103 (112)
155 3pgw_S U1-70K; protein-RNA com 99.8 3.5E-18 1.2E-22 149.9 14.2 84 63-146 100-183 (437)
156 3smz_A Protein raver-1, ribonu 99.8 2E-18 6.8E-23 142.7 11.9 111 62-210 19-129 (284)
157 2la4_A Nuclear and cytoplasmic 99.8 1.5E-18 5.2E-23 122.2 9.5 76 63-144 25-100 (101)
158 2e5j_A Methenyltetrahydrofolat 99.8 1.7E-18 5.9E-23 121.1 9.6 78 63-145 17-94 (97)
159 2ytc_A PRE-mRNA-splicing facto 99.8 1.8E-18 6.1E-23 117.9 9.0 75 63-143 10-85 (85)
160 4f02_A Polyadenylate-binding p 99.8 5.9E-18 2E-22 134.7 13.4 80 64-145 102-181 (213)
161 2ghp_A U4/U6 snRNA-associated 99.8 2.7E-18 9.1E-23 142.5 11.5 114 62-210 38-152 (292)
162 2i2y_A Fusion protein consists 99.8 1.7E-18 5.7E-23 130.7 9.2 79 62-145 70-148 (150)
163 3nmr_A Cugbp ELAV-like family 99.8 2.4E-18 8.3E-23 131.7 10.3 78 64-142 94-174 (175)
164 2lmi_A GRSF-1, G-rich sequence 99.8 4E-19 1.4E-23 126.8 5.4 80 63-144 9-91 (107)
165 2cjk_A Nuclear polyadenylated 99.8 2.1E-18 7.2E-23 131.3 9.6 80 64-144 86-165 (167)
166 2j8a_A Histone-lysine N-methyl 99.8 2.2E-18 7.6E-23 125.4 9.0 78 66-143 3-94 (136)
167 2xs2_A Deleted in azoospermia- 99.8 6.9E-19 2.4E-23 124.2 6.1 79 64-145 8-86 (102)
168 2f3j_A RNA and export factor b 99.8 3.8E-18 1.3E-22 132.5 10.1 81 63-144 86-166 (177)
169 1b7f_A Protein (SXL-lethal pro 99.7 1.3E-17 4.5E-22 126.8 12.4 80 63-142 87-168 (168)
170 2dha_A FLJ20171 protein; RRM d 99.7 3.4E-18 1.2E-22 125.0 8.3 80 62-143 20-103 (123)
171 3egn_A RNA-binding protein 40; 99.7 9.7E-19 3.3E-23 130.9 5.4 84 63-146 43-131 (143)
172 1fxl_A Paraneoplastic encephal 99.7 1.9E-17 6.4E-22 125.6 12.4 79 64-142 87-167 (167)
173 2hgm_A HNRPF protein, heteroge 99.7 2.9E-18 9.8E-23 125.8 7.5 78 63-143 40-119 (126)
174 1whx_A Hypothetical protein ri 99.7 5.1E-18 1.8E-22 121.8 8.6 75 64-144 9-83 (111)
175 1x5p_A Negative elongation fac 99.7 3.9E-17 1.3E-21 114.2 12.3 76 63-146 13-88 (97)
176 2cq2_A Hypothetical protein LO 99.7 9.8E-18 3.4E-22 120.6 9.4 77 64-146 24-107 (114)
177 3u1l_A PRE-mRNA-splicing facto 99.7 9.2E-18 3.1E-22 135.7 10.1 133 8-146 75-230 (240)
178 1wg1_A KIAA1579 protein, homol 99.7 1.1E-17 3.8E-22 115.0 9.1 74 64-144 4-77 (88)
179 2yh0_A Splicing factor U2AF 65 99.7 2E-17 6.7E-22 129.3 11.6 84 63-146 112-195 (198)
180 2dnl_A Cytoplasmic polyadenyla 99.7 1.9E-17 6.4E-22 119.4 10.3 78 63-143 6-86 (114)
181 2e44_A Insulin-like growth fac 99.7 1E-17 3.5E-22 116.8 8.4 78 64-145 14-92 (96)
182 1fje_B Nucleolin RBD12, protei 99.7 2.4E-17 8.3E-22 126.5 10.2 77 64-145 98-174 (175)
183 1sjr_A Polypyrimidine tract-bi 99.7 5.7E-17 1.9E-21 123.6 11.6 78 65-146 46-125 (164)
184 3d2w_A TAR DNA-binding protein 99.7 3.5E-17 1.2E-21 112.9 9.3 75 62-145 8-84 (89)
185 1wf0_A TDP-43, TAR DNA-binding 99.7 1.6E-17 5.4E-22 114.1 7.6 78 63-147 3-80 (88)
186 3zzy_A Polypyrimidine tract-bi 99.7 9.9E-17 3.4E-21 117.9 12.1 78 64-146 27-107 (130)
187 2diu_A KIAA0430 protein; struc 99.7 7.7E-17 2.6E-21 111.1 10.6 73 64-146 7-85 (96)
188 2hzc_A Splicing factor U2AF 65 99.7 6.1E-17 2.1E-21 110.6 8.6 71 64-141 5-86 (87)
189 2pe8_A Splicing factor 45; RRM 99.7 2.8E-16 9.6E-21 111.7 11.8 81 63-143 6-92 (105)
190 2e5i_A Heterogeneous nuclear r 99.7 2E-16 7E-21 115.5 10.6 74 66-145 26-102 (124)
191 2bz2_A Negative elongation fac 99.7 2.7E-16 9.4E-21 114.6 9.7 76 62-145 36-111 (121)
192 2voo_A Lupus LA protein; RNA-b 99.7 3.6E-16 1.2E-20 122.9 11.0 79 64-144 108-186 (193)
193 2adc_A Polypyrimidine tract-bi 99.6 5.4E-15 1.8E-19 118.8 12.5 77 63-144 149-227 (229)
194 3sde_A Paraspeckle component 1 99.6 4.6E-15 1.6E-19 121.5 11.9 82 64-146 95-180 (261)
195 2dit_A HIV TAT specific factor 99.6 9.6E-15 3.3E-19 104.7 11.9 79 63-145 13-102 (112)
196 3tyt_A Heterogeneous nuclear r 99.6 2.2E-15 7.4E-20 119.4 8.7 78 63-142 121-204 (205)
197 3pgw_A U1-A; protein-RNA compl 99.6 5.6E-15 1.9E-19 121.8 10.7 76 63-143 205-281 (282)
198 3v4m_A Splicing factor U2AF 65 99.6 6.1E-15 2.1E-19 104.8 9.0 80 64-143 4-95 (105)
199 1jmt_A Splicing factor U2AF 35 99.6 1E-15 3.5E-20 108.6 4.2 72 70-142 20-103 (104)
200 1qm9_A Polypyrimidine tract-bi 99.6 6.7E-15 2.3E-19 115.2 8.9 77 63-144 118-196 (198)
201 3ue2_A Poly(U)-binding-splicin 99.5 2.5E-14 8.4E-19 103.7 9.2 80 64-143 19-107 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 5.8E-14 2E-18 98.7 9.9 66 75-147 27-92 (100)
203 3tht_A Alkylated DNA repair pr 99.5 1.3E-13 4.4E-18 116.9 8.7 75 63-143 16-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 1.5E-12 5.2E-17 93.6 7.5 76 64-143 6-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 1.1E-11 3.7E-16 89.6 8.0 77 62-144 15-95 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 1.6E-11 5.3E-16 83.8 8.2 73 63-144 5-85 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 2.1E-10 7.2E-15 78.6 7.1 72 63-143 13-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 4.3E-10 1.5E-14 89.5 8.4 67 77-143 141-211 (222)
209 2i2y_A Fusion protein consists 98.8 2E-09 7E-14 80.5 3.0 104 103-216 9-114 (150)
210 2kn4_A Immunoglobulin G-bindin 98.7 1.8E-08 6E-13 75.8 5.6 104 94-211 2-105 (158)
211 2l9w_A U4/U6 snRNA-associated- 98.7 1.5E-07 5.1E-12 65.9 9.0 72 64-141 20-96 (117)
212 1wey_A Calcipressin 1; structu 97.8 7E-05 2.4E-09 52.0 7.1 75 64-144 4-83 (104)
213 1uw4_A UPF3X; nonsense mediate 97.7 0.00026 8.9E-09 48.1 9.1 69 66-134 2-72 (91)
214 2dhx_A Poly (ADP-ribose) polym 97.7 0.00046 1.6E-08 47.7 10.1 72 64-144 7-83 (104)
215 1whv_A Poly(A)-specific ribonu 97.6 0.00019 6.5E-09 49.1 6.6 56 64-128 15-70 (100)
216 3ctr_A Poly(A)-specific ribonu 97.5 0.00022 7.6E-09 48.9 5.5 54 66-128 7-60 (101)
217 1wwh_A Nucleoporin 35, nucleop 97.2 0.0019 6.4E-08 46.0 8.1 71 64-142 23-94 (119)
218 2l08_A Regulator of nonsense t 97.0 0.0018 6.1E-08 44.4 5.9 78 65-142 9-93 (97)
219 2lea_A Serine/arginine-rich sp 96.9 0.00068 2.3E-08 49.3 3.8 77 109-211 6-82 (135)
220 3pgw_S U1-70K; protein-RNA com 96.9 6.7E-05 2.3E-09 65.5 -2.2 33 172-211 105-137 (437)
221 1rk8_A CG8781-PA, CG8781-PA pr 96.8 0.00038 1.3E-08 52.4 1.7 92 112-211 11-107 (165)
222 3pq1_A Poly(A) RNA polymerase; 96.4 0.0014 4.6E-08 57.5 2.4 57 63-125 51-107 (464)
223 2ad9_A Polypyrimidine tract-bi 96.3 0.0016 5.6E-08 46.4 2.1 29 187-216 43-71 (119)
224 2cq1_A PTB-like protein L; RRM 96.2 0.0016 5.5E-08 45.0 1.7 30 186-216 26-55 (101)
225 3p3d_A Nucleoporin 53; structu 96.1 0.0098 3.4E-07 42.9 5.5 77 65-143 7-97 (132)
226 1x4d_A Matrin 3; structural ge 96.1 0.0018 6.1E-08 44.9 1.5 29 187-216 28-56 (102)
227 1wex_A Hypothetical protein (r 96.0 0.0024 8.3E-08 44.3 1.9 38 172-216 18-55 (104)
228 1sjq_A Polypyrimidine tract-bi 95.8 0.0024 8.2E-08 44.5 0.9 38 172-216 19-56 (105)
229 1x4f_A Matrin 3; structural ge 95.7 0.0079 2.7E-07 42.4 3.4 45 167-216 21-66 (112)
230 2cpj_A Non-POU domain-containi 95.6 0.0063 2.2E-07 41.2 2.4 38 172-216 18-55 (99)
231 2ytc_A PRE-mRNA-splicing facto 95.4 0.0088 3E-07 39.1 2.6 38 172-216 15-52 (85)
232 3r27_A HnRNP L, heterogeneous 95.3 0.0047 1.6E-07 42.7 0.9 38 172-216 24-61 (100)
233 1why_A Hypothetical protein ri 95.2 0.011 3.9E-07 39.8 2.7 38 172-216 20-57 (97)
234 2e5h_A Zinc finger CCHC-type a 95.0 0.023 8E-07 37.8 3.9 33 172-211 19-51 (94)
235 1x4c_A Splicing factor, argini 94.8 0.016 5.5E-07 40.0 2.8 33 172-211 18-50 (108)
236 2dnh_A Bruno-like 5, RNA bindi 94.7 0.016 5.4E-07 39.6 2.3 33 172-211 18-50 (105)
237 2d9p_A Polyadenylate-binding p 94.6 0.012 4E-07 40.2 1.5 32 172-210 18-49 (103)
238 2cq3_A RNA-binding protein 9; 94.6 0.017 5.8E-07 39.3 2.3 33 172-211 18-50 (103)
239 2dh8_A DAZ-associated protein 94.5 0.03 1E-06 38.1 3.5 25 186-211 27-51 (105)
240 2cph_A RNA binding motif prote 94.5 0.028 9.6E-07 38.4 3.3 33 172-211 18-50 (107)
241 2wbr_A GW182, gawky, LD47780P; 94.4 0.015 5E-07 39.2 1.6 38 172-216 10-47 (89)
242 1x4a_A Splicing factor, argini 94.4 0.045 1.5E-06 37.5 4.1 33 172-211 25-57 (109)
243 2cq2_A Hypothetical protein LO 94.3 0.018 6.1E-07 40.6 1.9 32 184-216 36-67 (114)
244 2cqd_A RNA-binding region cont 94.1 0.053 1.8E-06 37.6 4.0 34 172-212 20-53 (116)
245 1x4h_A RNA-binding protein 28; 94.0 0.039 1.3E-06 37.9 3.3 33 172-211 18-50 (111)
246 3beg_B Splicing factor, argini 94.0 0.017 5.7E-07 40.5 1.3 33 172-211 19-51 (115)
247 3ulh_A THO complex subunit 4; 94.0 0.014 4.7E-07 40.0 0.7 32 172-210 32-63 (107)
248 2e5j_A Methenyltetrahydrofolat 94.0 0.06 2.1E-06 36.1 4.0 30 172-209 22-51 (97)
249 2do0_A HnRNP M, heterogeneous 93.9 0.033 1.1E-06 38.5 2.7 33 172-211 18-50 (114)
250 2cqi_A Nucleolysin TIAR; RNA r 93.8 0.026 8.7E-07 38.4 2.0 32 172-210 18-49 (103)
251 1x5u_A Splicing factor 3B subu 93.8 0.043 1.5E-06 37.3 3.1 34 172-212 18-51 (105)
252 2cqc_A Arginine/serine-rich sp 93.8 0.031 1.1E-06 37.2 2.3 32 172-210 18-49 (95)
253 2hgn_A Heterogeneous nuclear r 93.8 0.034 1.2E-06 40.6 2.6 31 172-210 49-79 (139)
254 2dgp_A Bruno-like 4, RNA bindi 93.7 0.052 1.8E-06 36.9 3.4 33 172-211 16-48 (106)
255 2dnm_A SRP46 splicing factor; 93.7 0.052 1.8E-06 36.8 3.3 33 172-211 16-48 (103)
256 2la4_A Nuclear and cytoplasmic 93.6 0.027 9.1E-07 38.1 1.7 38 172-216 30-67 (101)
257 2kxn_B Transformer-2 protein h 93.6 0.042 1.5E-06 39.3 2.8 33 172-211 49-81 (129)
258 2cqg_A TDP-43, TAR DNA-binding 93.5 0.067 2.3E-06 36.2 3.6 33 172-211 18-50 (103)
259 4f25_A Polyadenylate-binding p 93.5 0.053 1.8E-06 37.8 3.2 79 3-81 25-113 (115)
260 1whx_A Hypothetical protein ri 93.5 0.022 7.6E-07 39.6 1.1 38 172-216 13-50 (111)
261 2lxi_A RNA-binding protein 10; 93.5 0.045 1.5E-06 36.5 2.6 34 172-212 4-38 (91)
262 2ku7_A MLL1 PHD3-CYP33 RRM chi 93.4 0.092 3.1E-06 37.5 4.5 33 172-211 66-98 (140)
263 2cqb_A Peptidyl-prolyl CIS-tra 93.4 0.099 3.4E-06 35.2 4.4 33 172-211 15-47 (102)
264 1wf0_A TDP-43, TAR DNA-binding 93.4 0.031 1.1E-06 36.8 1.7 37 172-215 8-45 (88)
265 3d2w_A TAR DNA-binding protein 93.3 0.024 8E-07 37.8 1.0 37 172-215 14-51 (89)
266 2dgo_A Cytotoxic granule-assoc 93.2 0.048 1.7E-06 37.7 2.6 24 187-211 27-50 (115)
267 2ywk_A Putative RNA-binding pr 93.1 0.021 7.2E-07 38.1 0.5 33 172-211 19-51 (95)
268 2j8a_A Histone-lysine N-methyl 93.1 0.036 1.2E-06 40.1 1.7 41 172-215 5-45 (136)
269 2m2b_A RNA-binding protein 10; 93.0 0.16 5.4E-06 36.1 5.2 26 186-212 34-61 (131)
270 1x5s_A Cold-inducible RNA-bind 93.0 0.088 3E-06 35.5 3.6 33 172-211 15-47 (102)
271 1x5p_A Negative elongation fac 92.9 0.043 1.5E-06 36.9 1.9 29 187-216 25-53 (97)
272 4fxv_A ELAV-like protein 1; RN 92.9 0.033 1.1E-06 37.9 1.2 33 172-211 22-54 (99)
273 1wel_A RNA-binding protein 12; 92.9 0.12 4.1E-06 36.3 4.3 29 172-207 28-56 (124)
274 3s8s_A Histone-lysine N-methyl 92.9 0.033 1.1E-06 38.7 1.3 25 186-211 17-41 (110)
275 2cq0_A Eukaryotic translation 92.7 0.043 1.5E-06 37.2 1.6 33 172-211 18-50 (103)
276 2do4_A Squamous cell carcinoma 92.6 0.079 2.7E-06 35.6 2.9 33 172-211 20-52 (100)
277 2cpz_A CUG triplet repeat RNA- 92.6 0.17 5.8E-06 34.9 4.7 34 172-212 28-61 (115)
278 1wi8_A EIF-4B, eukaryotic tran 92.4 0.093 3.2E-06 35.6 3.1 32 172-211 18-49 (104)
279 3d45_A Poly(A)-specific ribonu 92.4 0.38 1.3E-05 42.6 7.7 56 65-129 440-495 (507)
280 1uaw_A Mouse-musashi-1; RNP-ty 92.1 0.099 3.4E-06 33.1 2.7 33 172-211 3-35 (77)
281 2err_A Ataxin-2-binding protei 92.0 0.093 3.2E-06 36.1 2.7 33 172-211 32-64 (109)
282 2dgt_A RNA-binding protein 30; 92.0 0.072 2.4E-06 35.3 2.0 32 172-210 13-44 (92)
283 1x4g_A Nucleolysin TIAR; struc 92.0 0.046 1.6E-06 37.6 1.0 38 172-216 28-65 (109)
284 2mss_A Protein (musashi1); RNA 91.8 0.11 3.8E-06 32.7 2.7 34 172-212 2-35 (75)
285 2dgs_A DAZ-associated protein 91.8 0.11 3.6E-06 34.9 2.7 33 172-211 13-45 (99)
286 2cqp_A RNA-binding protein 12; 91.7 0.14 4.8E-06 34.1 3.3 32 172-210 18-49 (98)
287 2cqh_A IGF-II mRNA-binding pro 91.6 0.11 3.7E-06 34.4 2.6 25 172-203 11-35 (93)
288 2kt5_A RNA and export factor-b 91.6 0.33 1.1E-05 33.9 5.3 33 172-211 38-70 (124)
289 2e44_A Insulin-like growth fac 91.5 0.075 2.6E-06 35.4 1.8 34 172-212 18-52 (96)
290 2cpe_A RNA-binding protein EWS 91.5 0.18 6.3E-06 34.6 3.8 26 172-204 18-43 (113)
291 2cpy_A RNA-binding protein 12; 91.4 0.17 6E-06 34.9 3.6 32 172-210 18-50 (114)
292 2hvz_A Splicing factor, argini 91.4 0.063 2.1E-06 36.2 1.2 37 172-215 3-40 (101)
293 2dgu_A Heterogeneous nuclear r 91.3 0.12 3.9E-06 35.1 2.6 31 172-209 14-44 (103)
294 2dnp_A RNA-binding protein 14; 91.2 0.1 3.5E-06 34.3 2.2 32 172-210 12-43 (90)
295 2div_A TRNA selenocysteine ass 91.2 0.15 5.3E-06 34.0 3.1 26 186-212 20-46 (99)
296 2jvo_A Nucleolar protein 3; nu 91.2 0.08 2.7E-06 36.5 1.7 22 187-209 43-64 (108)
297 1iqt_A AUF1, heterogeneous nuc 91.2 0.13 4.4E-06 32.4 2.5 32 173-211 3-34 (75)
298 3s7r_A Heterogeneous nuclear r 90.7 0.099 3.4E-06 34.1 1.7 33 172-211 14-46 (87)
299 2lkz_A RNA-binding protein 5; 90.7 0.17 5.9E-06 34.1 2.9 33 172-211 12-46 (95)
300 3p5t_L Cleavage and polyadenyl 90.5 0.13 4.4E-06 33.9 2.1 33 172-211 4-38 (90)
301 2dnq_A RNA-binding protein 4B; 90.5 0.082 2.8E-06 34.8 1.1 31 172-209 11-41 (90)
302 2dgv_A HnRNP M, heterogeneous 90.3 0.097 3.3E-06 34.5 1.4 32 172-210 11-42 (92)
303 3u1l_A PRE-mRNA-splicing facto 90.2 0.063 2.1E-06 42.9 0.4 28 188-216 156-183 (240)
304 1wg5_A Heterogeneous nuclear r 90.2 0.2 6.9E-06 34.0 3.0 31 172-209 18-49 (104)
305 2khc_A Testis-specific RNP-typ 90.2 0.31 1.1E-05 33.6 4.0 24 187-211 52-75 (118)
306 2fy1_A RNA-binding motif prote 90.1 0.11 3.7E-06 36.3 1.5 34 172-212 10-43 (116)
307 2cq4_A RNA binding motif prote 90.1 0.14 4.8E-06 35.3 2.1 24 187-211 37-60 (114)
308 1wf1_A RNA-binding protein RAL 90.1 0.16 5.5E-06 34.8 2.4 32 172-208 28-60 (110)
309 1x5t_A Splicing factor 3B subu 90.0 0.18 6E-06 33.4 2.5 33 172-211 8-41 (96)
310 2x1f_A MRNA 3'-END-processing 90.0 0.11 3.7E-06 34.6 1.4 33 172-211 5-37 (96)
311 1whw_A Hypothetical protein ri 89.9 0.16 5.6E-06 33.9 2.3 34 172-212 11-44 (99)
312 3md1_A Nuclear and cytoplasmic 89.8 0.07 2.4E-06 34.4 0.3 33 172-211 4-36 (83)
313 2voo_A Lupus LA protein; RNA-b 89.8 0.12 4.3E-06 39.5 1.7 78 116-210 63-143 (193)
314 3ns6_A Eukaryotic translation 89.7 0.095 3.3E-06 35.4 0.9 40 172-212 9-48 (100)
315 1p27_B RNA-binding protein 8A; 89.5 0.14 4.9E-06 34.7 1.7 33 172-211 26-58 (106)
316 2dng_A Eukaryotic translation 89.5 0.19 6.4E-06 33.9 2.3 32 172-211 18-49 (103)
317 4a8x_A RNA-binding protein wit 89.3 0.095 3.2E-06 34.1 0.7 32 172-210 7-38 (88)
318 2cpf_A RNA binding motif prote 89.3 0.081 2.8E-06 35.4 0.3 32 172-210 8-39 (98)
319 1p1t_A Cleavage stimulation fa 89.3 0.12 4.1E-06 34.9 1.2 33 172-211 11-43 (104)
320 1oo0_B CG8781-PA, drosophila Y 89.2 0.19 6.5E-06 34.3 2.2 33 172-211 29-61 (110)
321 2cpd_A Apobec-1 stimulating pr 89.1 0.21 7.1E-06 33.4 2.3 29 172-207 18-48 (99)
322 1s79_A Lupus LA protein; RRM, 89.1 0.14 4.6E-06 35.1 1.4 33 172-211 14-46 (103)
323 3bs9_A Nucleolysin TIA-1 isofo 89.1 0.11 3.7E-06 33.8 0.8 33 172-211 9-41 (87)
324 2f3j_A RNA and export factor b 89.1 0.56 1.9E-05 35.3 5.0 25 186-211 99-123 (177)
325 3mdf_A Peptidyl-prolyl CIS-tra 88.9 0.16 5.6E-06 32.7 1.6 32 172-210 10-41 (85)
326 1x4b_A Heterogeneous nuclear r 88.9 0.19 6.4E-06 34.7 2.0 24 187-211 39-62 (116)
327 2bz2_A Negative elongation fac 88.8 0.14 4.8E-06 36.1 1.3 29 187-216 49-77 (121)
328 1x5o_A RNA binding motif, sing 88.8 0.39 1.3E-05 32.9 3.6 33 172-211 28-60 (114)
329 2dhg_A TRNA selenocysteine ass 88.7 0.11 3.7E-06 35.1 0.7 33 172-211 12-45 (104)
330 2ek1_A RNA-binding protein 12; 88.7 0.13 4.5E-06 34.0 1.1 32 172-210 18-49 (95)
331 2rs2_A Musashi-1, RNA-binding 88.7 0.18 6.2E-06 34.6 1.8 33 172-211 28-60 (109)
332 2la6_A RNA-binding protein FUS 88.7 0.34 1.2E-05 32.3 3.2 27 172-205 16-42 (99)
333 2cpi_A CCR4-NOT transcription 88.7 0.24 8.3E-06 34.0 2.5 35 171-212 17-54 (111)
334 3ex7_B RNA-binding protein 8A; 88.6 0.16 5.5E-06 35.6 1.5 33 172-211 25-57 (126)
335 1x4e_A RNA binding motif, sing 88.6 0.11 3.7E-06 33.7 0.5 33 172-211 8-40 (85)
336 2jvr_A Nucleolar protein 3; RN 88.5 0.22 7.4E-06 34.7 2.1 31 172-209 31-62 (111)
337 2dis_A Unnamed protein product 88.5 0.13 4.4E-06 35.1 0.9 31 172-209 11-42 (109)
338 2kvi_A Nuclear polyadenylated 88.4 0.12 4.3E-06 34.4 0.8 22 187-209 23-44 (96)
339 2krb_A Eukaryotic translation 88.4 0.12 4.2E-06 33.2 0.7 37 172-209 4-40 (81)
340 2dnz_A Probable RNA-binding pr 88.4 0.17 6E-06 33.4 1.5 33 172-211 8-40 (95)
341 2dgx_A KIAA0430 protein; RRM d 88.3 0.16 5.5E-06 33.9 1.3 33 172-211 12-48 (96)
342 2nlw_A Eukaryotic translation 88.2 0.24 8.4E-06 33.6 2.2 37 172-209 18-54 (105)
343 3ucg_A Polyadenylate-binding p 88.1 0.18 6.1E-06 32.8 1.4 33 172-211 9-41 (89)
344 2fc9_A NCL protein; structure 88.1 0.25 8.7E-06 33.1 2.2 26 172-204 18-43 (101)
345 2hgl_A HNRPF protein, heteroge 88.0 0.28 9.6E-06 35.4 2.5 32 172-210 47-81 (136)
346 2dnl_A Cytoplasmic polyadenyla 88.0 0.46 1.6E-05 32.7 3.6 30 172-209 11-40 (114)
347 2xnq_A Nuclear polyadenylated 87.7 0.14 4.9E-06 34.3 0.7 21 187-208 35-55 (97)
348 1wez_A HnRNP H', FTP-3, hetero 87.4 0.34 1.2E-05 32.8 2.5 30 172-209 18-47 (102)
349 2ki2_A SS-DNA binding protein 87.2 0.16 5.5E-06 33.2 0.7 33 172-211 4-36 (90)
350 3lqv_A PRE-mRNA branch site pr 87.0 0.2 6.7E-06 34.5 1.1 31 172-209 11-41 (115)
351 2jrs_A RNA-binding protein 39; 86.8 0.23 7.8E-06 34.1 1.3 33 172-211 29-61 (108)
352 2e5g_A U6 snRNA-specific termi 86.6 0.29 9.8E-06 32.4 1.7 28 172-206 11-38 (94)
353 1nu4_A U1A RNA binding domain; 86.5 0.16 5.5E-06 33.7 0.4 31 172-209 11-45 (97)
354 2xs2_A Deleted in azoospermia- 86.0 0.27 9.2E-06 33.0 1.4 32 172-210 12-43 (102)
355 2cpx_A Hypothetical protein FL 86.0 0.5 1.7E-05 32.3 2.8 27 172-205 28-54 (115)
356 2a3j_A U1 small nuclear ribonu 85.9 0.26 9E-06 35.1 1.3 34 172-208 32-65 (127)
357 2hzc_A Splicing factor U2AF 65 85.5 0.18 6.1E-06 32.7 0.3 22 172-200 9-30 (87)
358 1sjr_A Polypyrimidine tract-bi 85.3 0.2 6.9E-06 37.5 0.5 24 186-210 57-80 (164)
359 2e5i_A Heterogeneous nuclear r 85.2 0.21 7E-06 35.6 0.5 23 187-210 37-59 (124)
360 2jwn_A Embryonic polyadenylate 85.0 0.23 7.7E-06 34.7 0.6 33 172-211 39-71 (124)
361 2lmi_A GRSF-1, G-rich sequence 85.0 0.88 3E-05 30.8 3.7 33 172-211 14-49 (107)
362 3n9u_C Cleavage and polyadenyl 84.9 0.29 9.8E-06 36.1 1.2 33 172-211 58-92 (156)
363 1h2v_Z 20 kDa nuclear CAP bind 84.9 0.36 1.2E-05 35.2 1.7 33 172-211 42-74 (156)
364 2db1_A Heterogeneous nuclear r 84.9 0.63 2.1E-05 32.3 2.9 31 172-209 20-53 (118)
365 1u6f_A Tcubp1, RNA-binding pro 84.8 0.46 1.6E-05 33.8 2.2 25 186-211 53-77 (139)
366 2dit_A HIV TAT specific factor 84.0 0.87 3E-05 31.2 3.3 19 191-209 41-59 (112)
367 1wg1_A KIAA1579 protein, homol 83.6 0.47 1.6E-05 30.9 1.7 36 172-215 8-43 (88)
368 3egn_A RNA-binding protein 40; 83.5 0.41 1.4E-05 34.3 1.4 28 172-206 48-75 (143)
369 2d9o_A DNAJ (HSP40) homolog, s 83.3 0.24 8.3E-06 33.8 0.1 22 187-209 29-50 (100)
370 3q2s_C Cleavage and polyadenyl 82.5 0.41 1.4E-05 37.6 1.2 34 172-212 71-106 (229)
371 3zzy_A Polypyrimidine tract-bi 82.1 0.39 1.3E-05 34.5 0.9 30 177-210 33-62 (130)
372 1fj7_A Nucleolin RBD1, protein 81.9 0.46 1.6E-05 31.7 1.2 27 172-205 20-46 (101)
373 2g0c_A ATP-dependent RNA helic 80.8 5.3 0.00018 25.1 6.0 68 67-143 2-75 (76)
374 3tht_A Alkylated DNA repair pr 80.6 0.69 2.4E-05 38.8 2.0 29 187-216 32-60 (345)
375 1owx_A Lupus LA protein, SS-B, 80.5 0.36 1.2E-05 34.3 0.2 44 168-216 15-59 (121)
376 2lcw_A RNA-binding protein FUS 81.5 0.34 1.2E-05 33.4 0.0 18 187-205 19-36 (116)
377 2j76_E EIF-4B, EIF4B, eukaryot 80.2 0.61 2.1E-05 31.2 1.3 23 187-211 31-53 (100)
378 2dgw_A Probable RNA-binding pr 79.5 1.4 4.9E-05 28.6 3.0 31 172-210 13-43 (91)
379 2hgm_A HNRPF protein, heteroge 79.0 0.89 3.1E-05 32.3 1.9 31 172-210 45-77 (126)
380 2dnn_A RNA-binding protein 12; 77.9 0.95 3.3E-05 31.1 1.7 31 172-210 19-49 (109)
381 2dha_A FLJ20171 protein; RRM d 76.6 1.4 4.8E-05 31.0 2.3 25 172-203 26-50 (123)
382 1fjc_A Nucleolin RBD2, protein 72.0 0.75 2.6E-05 30.3 -0.1 28 172-206 19-46 (96)
383 2diu_A KIAA0430 protein; struc 68.1 1.9 6.5E-05 29.2 1.2 31 172-205 12-43 (96)
384 2fc8_A NCL protein; structure 66.8 3.4 0.00012 27.2 2.4 24 172-202 18-41 (102)
385 3s6e_A RNA-binding protein 39; 46.4 9.1 0.00031 26.3 1.8 21 191-211 32-52 (114)
386 4e8u_A Putative uncharacterize 34.6 93 0.0032 23.1 5.7 57 66-125 13-81 (172)
387 3oak_C Transcription elongatio 33.0 19 0.00066 18.7 1.2 17 191-207 8-24 (31)
388 3ts2_A Protein LIN-28 homolog 27.8 11 0.00037 27.4 -0.3 28 80-115 2-29 (148)
389 4eyt_A Telomerase associated p 24.6 1.5E+02 0.0053 19.5 7.4 58 62-127 9-66 (129)
390 3mfb_A Uncharacterized protein 23.0 1.3E+02 0.0043 22.0 4.7 37 77-113 3-42 (157)
391 3h7h_B Transcription elongatio 22.9 88 0.003 21.1 3.6 35 91-130 40-74 (106)
392 3fut_A Dimethyladenosine trans 20.9 52 0.0018 26.1 2.4 32 66-98 111-142 (271)
No 1
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.92 E-value=1.2e-24 Score=165.70 Aligned_cols=133 Identities=67% Similarity=1.104 Sum_probs=87.4
Q ss_pred cchhhcCCCCCChhHHHHhcCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHH
Q 037453 43 LSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTED 122 (216)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~ 122 (216)
...+.++................++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 96 (156)
T 1h2v_Z 17 LSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAEN 96 (156)
T ss_dssp ----------------CTTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred cccccccccCCChhhhcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHH
Confidence 33445555555555555556688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeCCeeEEEEeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 037453 123 AVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLL 175 (216)
Q Consensus 123 Al~~l~g~~l~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 175 (216)
||+.||+..|.|+.|+|+++.+....+..+++..+++.+..++..+..++..+
T Consensus 97 Ai~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~g~~~r~~~r~~~~~~rGG~ 149 (156)
T 1h2v_Z 97 AMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGY 149 (156)
T ss_dssp HHHHTTTSEETTEECEEEEESCCCTTCC-------------------------
T ss_pred HHHHhCCCEECCeEEEEEECCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCC
Confidence 99999999999999999999988777777777766666666666665555443
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=2.1e-23 Score=147.22 Aligned_cols=83 Identities=23% Similarity=0.408 Sum_probs=79.5
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
....++|||+|||+++|+++|+++|++||.|.+|++++|+.+|.++|||||+|.+.++|++|++.|||..++|++|+|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCC
Q 037453 142 DWG 144 (216)
Q Consensus 142 a~~ 144 (216)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 964
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.88 E-value=7.5e-23 Score=163.20 Aligned_cols=124 Identities=23% Similarity=0.332 Sum_probs=103.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
+.++|||+|||+++|+++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++|++.+|+..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 144 GFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
...... ......+.|.||+.. .++ ++|+++|++||.+...+++.
T Consensus 94 ~~~~~~----------------~~~~~~l~v~nl~~~------~t~-~~l~~~F~~~G~i~~~~i~~ 137 (213)
T 4f02_A 94 RDPSLR----------------KSGVGNIFIKNLDKS------IDN-KALYDTFSAFGNILSCKVVC 137 (213)
T ss_dssp CCTHHH----------------HHCTTEEEEESCCTT------CCH-HHHHHHHGGGSCEEEEEEEE
T ss_pred cccccc----------------ccccccceECCcccc------cHH-HHHHHHHhhcCCeEEEEeec
Confidence 422110 000112566666654 777 89999999999988776653
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.88 E-value=3.8e-22 Score=151.83 Aligned_cols=121 Identities=20% Similarity=0.288 Sum_probs=103.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCC
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWG 144 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~ 144 (216)
.++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|++.|++..+.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 145 FQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
.... .....+.|.|+|.. .++ ++|+++|++||.+.....+.
T Consensus 82 ~~~~------------------~~~~~l~v~nl~~~------~t~-~~l~~~f~~~G~i~~~~i~~ 122 (167)
T 1fxl_A 82 SSAS------------------IRDANLYVSGLPKT------MTQ-KELEQLFSQYGRIITSRILV 122 (167)
T ss_dssp CCGG------------------GTTCEEEEESCCTT------CCH-HHHHHHHGGGSCEEEEEEEE
T ss_pred Cccc------------------CCCCcEEECCCCCc------CCH-HHHHHHHHhcCCEeEEEEEe
Confidence 3211 01122566666654 677 88999999999987766553
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.88 E-value=3.8e-22 Score=152.25 Aligned_cols=123 Identities=18% Similarity=0.292 Sum_probs=104.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
+.++|||+|||+++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 144 GFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.... .....+.|.|+|.. .++ ++|+++|++||.+..+..+.+
T Consensus 82 ~~~~~------------------~~~~~l~v~nl~~~------~t~-~~l~~~f~~~G~i~~~~i~~~ 124 (168)
T 1b7f_A 82 PGGES------------------IKDTNLYVTNLPRT------ITD-DQLDTIFGKYGSIVQKNILRD 124 (168)
T ss_dssp CCSST------------------TTTCEEEEESCCTT------CCH-HHHHHHHTSSSCEEEEEEEEC
T ss_pred CCccc------------------CCCCCEEEeCCCCC------CCH-HHHHHhhhcCCcEEEEEEEEc
Confidence 53221 01122566666654 677 889999999999877665543
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.87 E-value=3.4e-22 Score=156.33 Aligned_cols=129 Identities=18% Similarity=0.264 Sum_probs=103.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++|+++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 356899999999999999999999999999999999999999999999999999999999998 4999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 143 WGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
......... . .......+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 90 ~~~~~~~~~----------~--~~~~~~~l~V~nLp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 139 (196)
T 1l3k_A 90 VSREDSQRP----------G--AHLTVKKIFVGGIKED------TEE-HHLRDYFEQYGKIEVIEIMTD 139 (196)
T ss_dssp CC-----------------------CCSEEEEECCTTT------CCH-HHHHHHHTTTSCEEEEEEEEC
T ss_pred cCccccccc----------c--cCCCcceEEEeCCCCC------CCH-HHHHHHHhcCCCeEEEEEeec
Confidence 654322110 0 0011122555665554 777 899999999999888776644
No 7
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=6.8e-22 Score=142.09 Aligned_cols=82 Identities=17% Similarity=0.247 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+.+++++|+++|++||.|.+|.|++|+.|++++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 037453 143 WG 144 (216)
Q Consensus 143 ~~ 144 (216)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 63
No 8
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=141.17 Aligned_cols=82 Identities=16% Similarity=0.192 Sum_probs=76.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC-CceeCCeeEEEEee
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAG-EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYIS-GTILDDRPIRVDFD 142 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~-g~~l~g~~l~V~~a 142 (216)
+++|||+|||+++|+++|+++|++|| .|.+|++++|+.||.++|||||+|.+.++|++|++.++ +..++|++|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 89999999999999999999999999999999999875 56899999999999
Q ss_pred CCCC
Q 037453 143 WGFQ 146 (216)
Q Consensus 143 ~~~~ 146 (216)
.+++
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7643
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=136.31 Aligned_cols=85 Identities=28% Similarity=0.455 Sum_probs=80.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76544
No 10
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.6e-21 Score=136.21 Aligned_cols=84 Identities=25% Similarity=0.466 Sum_probs=80.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEE-EEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKI-IMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
+.++|||+|||+.+++++|+++|++||.|..+ .+++|+.++.++|||||+|.+.++|++|+..||+..+.|++|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 67999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 76543
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=2.8e-21 Score=135.78 Aligned_cols=85 Identities=26% Similarity=0.401 Sum_probs=80.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+..||+..+.|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 87544
No 12
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=5.2e-22 Score=139.04 Aligned_cols=82 Identities=22% Similarity=0.302 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCC--eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc----eeCCee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGE--IKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGT----ILDDRP 136 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~----~l~g~~ 136 (216)
....+|||+|||+++|+++|+++|++||. +.+|++++|+.||+++|||||+|.+.++|++|++.||+. .++|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 36689999999999999999999999995 679999999999999999999999999999999999996 599999
Q ss_pred EEEEeeCC
Q 037453 137 IRVDFDWG 144 (216)
Q Consensus 137 l~V~~a~~ 144 (216)
|.|++|+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999863
No 13
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.86 E-value=1.9e-21 Score=144.96 Aligned_cols=86 Identities=19% Similarity=0.296 Sum_probs=81.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++++++|+++|+.||.|..|.+++++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 037453 143 WGFQDG 148 (216)
Q Consensus 143 ~~~~~~ 148 (216)
.+....
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 875544
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.86 E-value=2.2e-21 Score=154.15 Aligned_cols=136 Identities=10% Similarity=0.074 Sum_probs=98.8
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 64 ASTTVYVGNMS-FYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 64 ~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
+.++|||+||| +.+|+++|+++|++||.|.+|+++++ .+|||||+|.+.++|++||+.|||..+.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999875 4799999999999999999999999999999999998
Q ss_pred CCCCCCCCCC----CCC-----CCCCCCCCCC--------CCCCCC--cccccCCCCCCchhccccchhhHHHhhhcCCC
Q 037453 143 WGFQDGRQWG----RGR-----SGGQVRDEYR--------TDYDPD--ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGG 203 (216)
Q Consensus 143 ~~~~~~~~~~----~~~-----~~~~~~~~~~--------~~~~~~--~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~ 203 (216)
.......... .+. ..+.....+. ....++ +.|.|||.. .++ ++|+++|++||.+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~------~t~-~~L~~~F~~~G~v 150 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLE------VTE-ENFFEICDELGVK 150 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTT------CCH-HHHHHHHHHHTCC
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCC------CCH-HHHHHHHHhcCCc
Confidence 6432211000 000 0000000110 001122 455555554 777 8999999999998
Q ss_pred --Cccccccc
Q 037453 204 --DAYKSVNH 211 (216)
Q Consensus 204 --~~~~~~~~ 211 (216)
...+....
T Consensus 151 ~~~~v~~~~~ 160 (205)
T 3tyt_A 151 RPTSVKVFSG 160 (205)
T ss_dssp CCSEEEECSC
T ss_pred ceEEEEEEcC
Confidence 66665543
No 15
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.86 E-value=3.3e-21 Score=130.95 Aligned_cols=80 Identities=20% Similarity=0.407 Sum_probs=77.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCC
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGF 145 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 145 (216)
.+|||+|||+++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|++|+..|||..++|++|+|+++.+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999753
No 16
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.8e-21 Score=135.18 Aligned_cols=84 Identities=20% Similarity=0.352 Sum_probs=79.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|++||.|..|.++.|+.++.++|||||+|.+.++|++|++ ||+..+.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 367999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 86543
No 17
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.2e-21 Score=137.05 Aligned_cols=86 Identities=30% Similarity=0.526 Sum_probs=81.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 037453 143 WGFQDG 148 (216)
Q Consensus 143 ~~~~~~ 148 (216)
.+....
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 865443
No 18
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.9e-21 Score=147.75 Aligned_cols=122 Identities=20% Similarity=0.309 Sum_probs=100.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCC
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGF 145 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 145 (216)
++|||+|||+++|+++|+++|++||.|.+|.+++++. ++++|||||+|.+.++|.+|+..||+..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999865 679999999999999999999999999999999999998653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 146 QDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
.... ......+.|.|+|.. .++ ++|+++|++||.+.....+.+
T Consensus 80 ~~~~----------------~~~~~~l~v~nl~~~------~t~-~~l~~~f~~~G~i~~~~i~~~ 122 (166)
T 3md3_A 80 QQSS----------------SDDTFNLFVGDLNVN------VDD-ETLRNAFKDFPSYLSGHVMWD 122 (166)
T ss_dssp CCCC----------------CTTCEEEEEESCCTT------CCH-HHHHHHHTTSTTEEEEEEEEC
T ss_pred CCCC----------------CCCCceEEECCCCCC------CCH-HHHHHHHhccCCeeEEEEEec
Confidence 3210 011122555565554 677 899999999999887766543
No 19
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=132.38 Aligned_cols=81 Identities=26% Similarity=0.409 Sum_probs=77.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
+.++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|++.||+..++|+.|+|+++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 037453 144 G 144 (216)
Q Consensus 144 ~ 144 (216)
+
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 5
No 20
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=4.7e-21 Score=138.90 Aligned_cols=84 Identities=21% Similarity=0.385 Sum_probs=79.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++++++|+++|++||.|..|.++.++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 86544
No 21
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2e-21 Score=137.29 Aligned_cols=86 Identities=24% Similarity=0.359 Sum_probs=81.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+.+++++|+++|++||.|..|.++.|+.+++++|||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 037453 143 WGFQDG 148 (216)
Q Consensus 143 ~~~~~~ 148 (216)
.+....
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 865443
No 22
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=137.51 Aligned_cols=85 Identities=26% Similarity=0.452 Sum_probs=80.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+..||+..+.|+.|.|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 76443
No 23
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.3e-21 Score=136.87 Aligned_cols=86 Identities=30% Similarity=0.435 Sum_probs=81.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+..||+..+.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 037453 143 WGFQDG 148 (216)
Q Consensus 143 ~~~~~~ 148 (216)
.+....
T Consensus 93 ~~~~~~ 98 (105)
T 1x5u_A 93 SAHNKN 98 (105)
T ss_dssp TTTSCC
T ss_pred CCCCcC
Confidence 865443
No 24
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.7e-21 Score=136.20 Aligned_cols=85 Identities=31% Similarity=0.387 Sum_probs=80.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+..||+..+.|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76443
No 25
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=2.4e-21 Score=147.34 Aligned_cols=141 Identities=18% Similarity=0.307 Sum_probs=103.2
Q ss_pred hhheeeeccccccceeeeecchhhHHHHHhhhhcccccch---------hhcCCCCCChhHHHHhcCCCcEEEEcCCCCC
Q 037453 6 QYLWLVNRQKRTRHCFISSLLLGELSAMASLFKDQRKLSA---------YRDRRFPGTQEEFEEALLASTTVYVGNMSFY 76 (216)
Q Consensus 6 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~ 76 (216)
||..+.+..+..+.++++.....+.+.....+........ ....................++|||+|||++
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 81 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYR 81 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTT
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCC
Confidence 4556677777778888777766666554333321110000 0000000000001112245789999999999
Q ss_pred CCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCCC
Q 037453 77 TTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQ 146 (216)
Q Consensus 77 ~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~~ 146 (216)
+++++|+++|++||.|..|.+++|+.+|.++|||||+|.+.++|++|+..|||..+.|++|+|.++.+..
T Consensus 82 ~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 82 TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998643
No 26
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=1.4e-20 Score=135.76 Aligned_cols=85 Identities=26% Similarity=0.378 Sum_probs=80.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|+.||.|..|.+++++.++.++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 93 ~~~~~ 97 (115)
T 2dgo_A 93 TRKPP 97 (115)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 86544
No 27
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=3.2e-21 Score=139.52 Aligned_cols=81 Identities=25% Similarity=0.393 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
...+|||+|||+++|+++|+++|++||.|.+|+|++|+. .++|||||+|.+.++|++||+.||+..|.|++|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 357899999999999999999999999999999999863 479999999999999999999999999999999999987
Q ss_pred CCC
Q 037453 144 GFQ 146 (216)
Q Consensus 144 ~~~ 146 (216)
+..
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 28
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=1.4e-21 Score=143.34 Aligned_cols=86 Identities=24% Similarity=0.363 Sum_probs=80.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.||+..|.|+.|.|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 037453 143 WGFQDG 148 (216)
Q Consensus 143 ~~~~~~ 148 (216)
.+....
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 765443
No 29
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=5.1e-21 Score=138.18 Aligned_cols=85 Identities=12% Similarity=0.258 Sum_probs=80.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|++|++.||+..+.|+.|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 76543
No 30
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=3.9e-21 Score=131.17 Aligned_cols=81 Identities=26% Similarity=0.395 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+++++++|+++|++||.|..+.+++|+.++.++|||||+|.+.++|++|++.|||..++|++|+|++|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 037453 143 W 143 (216)
Q Consensus 143 ~ 143 (216)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 31
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.85 E-value=7.8e-21 Score=157.26 Aligned_cols=175 Identities=16% Similarity=0.145 Sum_probs=124.5
Q ss_pred chhhhheeeec--cccccceeeeecchhhHHHHHhhhhcccccchhhcCCCCCChhHHHHhcCCCcEEEEcCCCCCCCHH
Q 037453 3 ITKQYLWLVNR--QKRTRHCFISSLLLGELSAMASLFKDQRKLSAYRDRRFPGTQEEFEEALLASTTVYVGNMSFYTTEE 80 (216)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~ 80 (216)
++.+|+ |... .+..+.|++++............+.... ... +.... ......++|||+|||+.+|++
T Consensus 42 ~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g---~~i~v------~~~~~~~~l~v~nlp~~~t~~ 110 (284)
T 3smz_A 42 LLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSR-LRE---RELSV------QLQPTDALLCVANLPPSLTQQ 110 (284)
T ss_dssp HTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCE-ETT---EECEE------EECCCSCEEEEESCCTTCCHH
T ss_pred HHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCe-eCC---eEEEE------EecCCCCEEEEcCCCCcCCHH
Confidence 456666 4322 3445677777766555544333333222 110 00000 012356899999999999999
Q ss_pred HHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCCCCCCCCCCCCCCCCC
Q 037453 81 QIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQV 160 (216)
Q Consensus 81 ~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~~~~~~~~~~~~~~~~ 160 (216)
+|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|+|..++|+.|.|.++.+.....
T Consensus 111 ~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~----------- 179 (284)
T 3smz_A 111 QFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP----------- 179 (284)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT-----------
T ss_pred HHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999986532210
Q ss_pred CCCCCCCCCCCcccccCCCCCCchhcc-ccchhhHHHhhhcCCCCcccccc
Q 037453 161 RDEYRTDYDPDILLLTLLNFMCWSDVV-NISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 161 ~~~~~~~~~~~~~v~~~~~~~s~~~~~-~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
.......+.|.|+|.. . ++ ++|+++|+.||.+.......
T Consensus 180 ----~~~~~~~l~v~nlp~~------~~~~-~~l~~~f~~~G~i~~v~i~~ 219 (284)
T 3smz_A 180 ----ALLHSRCLCVDRLPPG------FNDV-DALCRALSAVHSPTFCQLAC 219 (284)
T ss_dssp ----TTTSCSEEEEECCCTT------CCCH-HHHHHHTCSSSCCSEEEEEE
T ss_pred ----ccCCccEEEEecCCcc------cCCH-HHHHHHhhCCCCeEEEEEEE
Confidence 0011122555555553 4 66 89999999999988877554
No 32
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=4.6e-21 Score=134.42 Aligned_cols=85 Identities=27% Similarity=0.437 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCC---CCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKN---SKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~---tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 139 (216)
.+.++|||+|||+++++++|+++|++||.|..|.+++++. |+.++|||||+|.+.++|++|+..||+..+.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3678999999999999999999999999999999999877 6689999999999999999999999999999999999
Q ss_pred EeeCCCCC
Q 037453 140 DFDWGFQD 147 (216)
Q Consensus 140 ~~a~~~~~ 147 (216)
+++.+...
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99976443
No 33
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.85 E-value=2.5e-21 Score=148.46 Aligned_cols=124 Identities=19% Similarity=0.292 Sum_probs=100.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCC--CcccEEEEEecCHHHHHHHHHHhCCceeC---CeeEE
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSK--TPCGFCFALFYSREDTEDAVKYISGTILD---DRPIR 138 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg--~~~g~afV~F~~~~~a~~Al~~l~g~~l~---g~~l~ 138 (216)
+.++|||+|||+++|+++|+++|++||.|.+|.+++++.++ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999999887 89999999999999999999999998775 57788
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 139 VDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 139 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.++...... ......+.|.|+|.. .++ ++|+++|++||.+..+..+.+
T Consensus 82 ~~~~~~~~~~-----------------~~~~~~l~v~nl~~~------~t~-~~l~~~F~~~G~i~~v~~~~~ 130 (175)
T 3nmr_A 82 MKPADSEKNN-----------------AVEDRKLFIGMISKK------CTE-NDIRVMFSSFGQIEECRILRG 130 (175)
T ss_dssp EEECGGGCCS-----------------CGGGSEEEEESCCTT------CCH-HHHHHHHGGGSCEEEEEEEEC
T ss_pred Eccccccccc-----------------cCCCCeEEEcCCCCc------CCH-HHHHHHHHhCCCEEEEEEEEC
Confidence 8876532211 011122555666554 777 889999999999887766543
No 34
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=6.3e-21 Score=133.38 Aligned_cols=82 Identities=28% Similarity=0.475 Sum_probs=78.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
++++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q 037453 144 GF 145 (216)
Q Consensus 144 ~~ 145 (216)
+.
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 35
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=136.45 Aligned_cols=85 Identities=22% Similarity=0.383 Sum_probs=79.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++|+++|+++|++||.|..|.|++++.+++++|||||+|.+.++|++||+.+++ .+.|++|+|+++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 4679999999999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred CCCCCC
Q 037453 143 WGFQDG 148 (216)
Q Consensus 143 ~~~~~~ 148 (216)
......
T Consensus 94 ~~~~~~ 99 (116)
T 2cqd_A 94 YLGAKP 99 (116)
T ss_dssp TTTCCC
T ss_pred ccCCCc
Confidence 765443
No 36
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.5e-21 Score=134.92 Aligned_cols=84 Identities=26% Similarity=0.366 Sum_probs=78.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCC-CCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNS-KTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t-g~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
.+.++|||+|||+++++++|+++|++|| |..|.+++++.+ ++++|||||+|.+.++|++|| .||+..+.|+.|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3569999999999999999999999999 999999999988 999999999999999999999 8999999999999999
Q ss_pred eCCCCCC
Q 037453 142 DWGFQDG 148 (216)
Q Consensus 142 a~~~~~~ 148 (216)
+.+....
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9875543
No 37
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=6e-21 Score=135.73 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee---CCeeEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTIL---DDRPIRV 139 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l---~g~~l~V 139 (216)
...++|||+|||+.+++++|+++|++||.|..|.++.|+.+++++|||||+|.+.++|++|++.||+..+ .|++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4679999999999999999999999999999999999999999999999999999999999999999988 8999999
Q ss_pred EeeCCCCC
Q 037453 140 DFDWGFQD 147 (216)
Q Consensus 140 ~~a~~~~~ 147 (216)
+++.+...
T Consensus 91 ~~a~~~~~ 98 (106)
T 2dgp_A 91 KPADSESR 98 (106)
T ss_dssp EECCCCSC
T ss_pred EECCcccc
Confidence 99976443
No 38
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.85 E-value=1.9e-21 Score=154.22 Aligned_cols=139 Identities=20% Similarity=0.221 Sum_probs=104.3
Q ss_pred HHhcCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 037453 59 EEALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIR 138 (216)
Q Consensus 59 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 138 (216)
.......++|||+|||+++|+++|+++|+.||.|..|.+++++.++.++|||||+|.+.++|.+|++.||+..+.|+.|.
T Consensus 22 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 101 (216)
T 2qfj_A 22 QGALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 101 (216)
T ss_dssp HHHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCE
T ss_pred CcccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEE
Confidence 33444679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 139 VDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 139 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
|.++.......... ............+.|.||+.. .++ ++|+++|++||.+..+..+.+
T Consensus 102 v~~~~~~~~~~~~~-------~~~~~~~~~~~~l~v~nlp~~------~t~-~~l~~~f~~~G~v~~v~i~~~ 160 (216)
T 2qfj_A 102 VGRPSNIGQAQPII-------DQLAEEARAFNRIYVASVHQD------LSD-DDIKSVFEAFGKIKSATLARD 160 (216)
T ss_dssp EECCSCCGGGHHHH-------HHHHHHHTTSCEEEEECCCTT------CCH-HHHHHHHTTSSCEEEEEEEEC
T ss_pred EecCCCccccchhh-------hhhhcccCCCcEEEEeCCCCc------CCH-HHHHHHHhccCCeeEEEEEec
Confidence 98875422100000 000000011122555565554 677 899999999999888777654
No 39
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=9.1e-21 Score=135.80 Aligned_cols=85 Identities=27% Similarity=0.460 Sum_probs=80.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC------CceeCCee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYIS------GTILDDRP 136 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~------g~~l~g~~ 136 (216)
.+.++|||+|||+++++++|+++|++||.|..|.+++|+.++.++|||||+|.+.++|++|+..|| +..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 467899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEeeCCCCC
Q 037453 137 IRVDFDWGFQD 147 (216)
Q Consensus 137 l~V~~a~~~~~ 147 (216)
|+|.++.+...
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999976543
No 40
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=1.1e-21 Score=135.80 Aligned_cols=81 Identities=19% Similarity=0.302 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAG--EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
.+|||+|||+++|+++|+++|++|| .|.++.++.|+.+|+++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 037453 144 GFQ 146 (216)
Q Consensus 144 ~~~ 146 (216)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 643
No 41
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1.4e-20 Score=133.29 Aligned_cols=83 Identities=30% Similarity=0.536 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+++++++|+++|++|| |..|.+++|+.+++++|||||+|.+.++|++|+ .||+..+.|++|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3578999999999999999999999997 999999999999999999999999999999999 79999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 86443
No 42
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=133.09 Aligned_cols=83 Identities=17% Similarity=0.374 Sum_probs=78.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++ +++++|||||+|.+.++|++|++.||+..++|++|+|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred CCCC
Q 037453 143 WGFQ 146 (216)
Q Consensus 143 ~~~~ 146 (216)
.+..
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7643
No 43
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.5e-21 Score=136.53 Aligned_cols=85 Identities=19% Similarity=0.318 Sum_probs=80.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIK--------KIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDD 134 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g 134 (216)
...++|||+|||+.+|+++|+++|++||.|. .|.++.|+.+++++|||||+|.+.++|++||+.||+..+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4679999999999999999999999999998 69999999999999999999999999999999999999999
Q ss_pred eeEEEEeeCCCCC
Q 037453 135 RPIRVDFDWGFQD 147 (216)
Q Consensus 135 ~~l~V~~a~~~~~ 147 (216)
+.|+|+++.+...
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999986543
No 44
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=133.65 Aligned_cols=83 Identities=24% Similarity=0.383 Sum_probs=78.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+.+|+++|+++|++||.|..|.++.+ ++.++|||||+|.+.++|++|+..||+..+.|++|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 36799999999999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 91 ~~~~~ 95 (103)
T 2d9p_A 91 QRKEE 95 (103)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 86544
No 45
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=7.8e-21 Score=133.50 Aligned_cols=83 Identities=19% Similarity=0.387 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCee-EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCee----E
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIK-KIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRP----I 137 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~----l 137 (216)
...++|||+|||+++++++|+++|++||.|. .|.+++|+.++.++|||||+|.+.++|++|++.||+..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4679999999999999999999999999999 9999999999999999999999999999999999999999999 9
Q ss_pred EEEeeCCC
Q 037453 138 RVDFDWGF 145 (216)
Q Consensus 138 ~V~~a~~~ 145 (216)
+|+++.+.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99999753
No 46
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=9.1e-21 Score=134.33 Aligned_cols=84 Identities=18% Similarity=0.343 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCce-eCCeeEEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSR-AGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTI-LDDRPIRVD 140 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~-l~g~~l~V~ 140 (216)
.+.++|||+|||+++|+++|+++|++ ||.|..|.++.|+ ++.++|||||+|.+.++|++|++.||+.. +.|++|+|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 46789999999999999999999999 9999999999998 99999999999999999999999999999 999999999
Q ss_pred eeCCCCC
Q 037453 141 FDWGFQD 147 (216)
Q Consensus 141 ~a~~~~~ 147 (216)
++.+...
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9976543
No 47
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=134.09 Aligned_cols=85 Identities=24% Similarity=0.384 Sum_probs=80.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeec-CCCCCcccEEEEEecCHHHHHHHHHHh-CCceeCCeeEEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLD-KNSKTPCGFCFALFYSREDTEDAVKYI-SGTILDDRPIRVD 140 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d-~~tg~~~g~afV~F~~~~~a~~Al~~l-~g~~l~g~~l~V~ 140 (216)
...++|||+|||+.+++++|+++|++||.|..|.++.+ +.++.++|||||+|.+.++|++|+..| |+..+.|+.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 46799999999999999999999999999999999999 789999999999999999999999999 9999999999999
Q ss_pred eeCCCCC
Q 037453 141 FDWGFQD 147 (216)
Q Consensus 141 ~a~~~~~ 147 (216)
++.+...
T Consensus 93 ~a~~~~~ 99 (107)
T 2cph_A 93 WADSEVT 99 (107)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9986543
No 48
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=1.8e-20 Score=132.99 Aligned_cols=84 Identities=19% Similarity=0.272 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC---eeEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDD---RPIRV 139 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g---~~l~V 139 (216)
...++|||+|||+.+++++|+++|++||.|..|.++.++ ++.++|||||+|.+.++|++|++.||+..+.| ++|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 467999999999999999999999999999999999987 78999999999999999999999999999988 99999
Q ss_pred EeeCCCCC
Q 037453 140 DFDWGFQD 147 (216)
Q Consensus 140 ~~a~~~~~ 147 (216)
.++.+...
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99986544
No 49
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=131.42 Aligned_cols=81 Identities=27% Similarity=0.534 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.||+..+.|++|+|++|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 037453 143 W 143 (216)
Q Consensus 143 ~ 143 (216)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 50
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=134.40 Aligned_cols=83 Identities=25% Similarity=0.389 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|++||.|..|.++.|+.++.++|||||+|.+.++|++|+..|||..++|+.|.|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 037453 143 WGF 145 (216)
Q Consensus 143 ~~~ 145 (216)
.+.
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 753
No 51
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=131.40 Aligned_cols=82 Identities=32% Similarity=0.449 Sum_probs=78.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+.+++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|++|+..||+..+.|++|+|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 037453 143 WG 144 (216)
Q Consensus 143 ~~ 144 (216)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 52
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.84 E-value=1.8e-20 Score=128.94 Aligned_cols=80 Identities=24% Similarity=0.452 Sum_probs=76.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|+ .||+..+.|+.|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999999999999999999999999999999999 899999999999999987
Q ss_pred C
Q 037453 144 G 144 (216)
Q Consensus 144 ~ 144 (216)
+
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 53
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=1.2e-20 Score=135.16 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=79.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|++|+..|||..++|++|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 36689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 037453 143 WGFQ 146 (216)
Q Consensus 143 ~~~~ 146 (216)
.+..
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 7533
No 54
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=129.03 Aligned_cols=82 Identities=26% Similarity=0.408 Sum_probs=77.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCC-cccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKT-PCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~-~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
..++|||+|||+++++++|+++|++||.|..+.++.++.++. ++|||||+|.+.++|++|+..|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 568999999999999999999999999999999999988776 8999999999999999999999999999999999999
Q ss_pred CCC
Q 037453 143 WGF 145 (216)
Q Consensus 143 ~~~ 145 (216)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 55
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=2.2e-20 Score=128.14 Aligned_cols=80 Identities=24% Similarity=0.403 Sum_probs=75.7
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
..+.++|||+|||+++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++ +++..++|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3477999999999999999999999999999999999999999999999999999999999997 688899999999987
Q ss_pred e
Q 037453 142 D 142 (216)
Q Consensus 142 a 142 (216)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 56
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=132.22 Aligned_cols=81 Identities=22% Similarity=0.344 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKK--------IIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDD 134 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g 134 (216)
...++|||+|||+++++++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|++|++.|||..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46799999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred eeEEEEeeC
Q 037453 135 RPIRVDFDW 143 (216)
Q Consensus 135 ~~l~V~~a~ 143 (216)
+.|+|++|.
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999873
No 57
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.84 E-value=2.1e-21 Score=148.08 Aligned_cols=121 Identities=21% Similarity=0.266 Sum_probs=101.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
++++|||+|||+++|+++|+++|++||.|.+|.+++++.+|.++|||||+|.+.++|++|+. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999 4679999999999875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 144 GFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.... .....+.|.|+|.. .++ ++|+++|++||.+.....+.+
T Consensus 80 ~~~~~------------------~~~~~l~V~nlp~~------~t~-~~l~~~F~~~G~i~~~~i~~~ 122 (167)
T 2cjk_A 80 PRDEQ------------------DKTGKIFVGGIGPD------VRP-KEFEEFFSQWGTIIDAQLMLD 122 (167)
T ss_dssp CHHHH------------------HHCEEEEEEEECTT------CCH-HHHHHHHHTTSCCSEEECCCS
T ss_pred chhhc------------------cCCCeEEECCCCCC------CCH-HHHHHHHHhCccEEEEEEEEc
Confidence 42110 00122566666654 677 889999999999988776654
No 58
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=3.3e-21 Score=136.08 Aligned_cols=81 Identities=20% Similarity=0.257 Sum_probs=77.8
Q ss_pred CCcEEEEcCCCC------CCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC-ee
Q 037453 64 ASTTVYVGNMSF------YTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDD-RP 136 (216)
Q Consensus 64 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g-~~ 136 (216)
..++|||+|||+ ++++++|+++|++||.|.+|.|++|+.||+++|||||+|.+.++|++|++.|||..+.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEeeCC
Q 037453 137 IRVDFDWG 144 (216)
Q Consensus 137 l~V~~a~~ 144 (216)
|+|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999864
No 59
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=134.99 Aligned_cols=82 Identities=26% Similarity=0.453 Sum_probs=79.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|++|++.|||..++|++|+|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 037453 143 WG 144 (216)
Q Consensus 143 ~~ 144 (216)
.+
T Consensus 104 ~~ 105 (108)
T 2jrs_A 104 TE 105 (108)
T ss_dssp CS
T ss_pred cc
Confidence 75
No 60
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.4e-20 Score=129.76 Aligned_cols=83 Identities=29% Similarity=0.426 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|++||.|..|.+++|+.+ ++|||||+|.+.++|++|+..||+..+.|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 46799999999999999999999999999999999998654 6899999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 86443
No 61
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=133.27 Aligned_cols=84 Identities=23% Similarity=0.264 Sum_probs=79.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++||.. ++..|.|+.|.|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 4679999999999999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 93 ~~~~~ 97 (105)
T 2dh8_A 93 TPRGM 97 (105)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 76543
No 62
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=9.3e-20 Score=131.20 Aligned_cols=83 Identities=25% Similarity=0.344 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|++||.|..|.++.++ +++++|||||+|.+.++|++|++.||+..+.|+.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 467899999999999999999999999999999999987 5899999999999999999999999999999999999999
Q ss_pred CCCC
Q 037453 143 WGFQ 146 (216)
Q Consensus 143 ~~~~ 146 (216)
....
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7543
No 63
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-20 Score=134.15 Aligned_cols=83 Identities=23% Similarity=0.366 Sum_probs=78.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++||.. ++..|.|+.|+|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999999999999999999999999999999996 9999999999999998
Q ss_pred CCCC
Q 037453 144 GFQD 147 (216)
Q Consensus 144 ~~~~ 147 (216)
+...
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6544
No 64
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.83 E-value=2.5e-20 Score=154.04 Aligned_cols=82 Identities=21% Similarity=0.397 Sum_probs=75.0
Q ss_pred cCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 037453 62 LLASTTVYVGNMSFYTTEEQIY----ELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPI 137 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l 137 (216)
..+.++|||+|||+++|+++|+ ++|++||.|..|.+.+ +++++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3468999999999999999977 8999999999999875 67899999999999999999999999999999999
Q ss_pred EEEeeCCCC
Q 037453 138 RVDFDWGFQ 146 (216)
Q Consensus 138 ~V~~a~~~~ 146 (216)
+|.++....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999986543
No 65
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=2.7e-20 Score=133.38 Aligned_cols=85 Identities=22% Similarity=0.375 Sum_probs=76.0
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 61 ALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 61 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
.....++|||+|||+++++++|+++|+.||.|..|.+++|+.+|.++|||||+|.+.++|++|+..+ +..++|+.|.|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456799999999999999999999999999999999999999999999999999999999999966 599999999999
Q ss_pred eeCCCC
Q 037453 141 FDWGFQ 146 (216)
Q Consensus 141 ~a~~~~ 146 (216)
++.+..
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 997543
No 66
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.9e-20 Score=130.94 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC-----eeE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDD-----RPI 137 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g-----~~l 137 (216)
...++|||+|||+++|+++|+++|++||.|..|.++.| |||||+|.+.++|++||+.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 35789999999999999999999999999999999875 899999999999999999999999999 999
Q ss_pred EEEeeCCCCCCC
Q 037453 138 RVDFDWGFQDGR 149 (216)
Q Consensus 138 ~V~~a~~~~~~~ 149 (216)
+|+++.+....+
T Consensus 86 ~V~~a~~~~~~~ 97 (108)
T 1x4c_A 86 RVKVDGPRSPSY 97 (108)
T ss_dssp EEEESSCCSCCC
T ss_pred EEEeCCCCCCCC
Confidence 999998755443
No 67
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.2e-20 Score=129.29 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIY----ELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIR 138 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 138 (216)
...++|||+|||+.+++++|+ ++|++||.|.+|.++.|+.+ +|||||+|.+.++|++|++.|||..++|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356899999999999999999 99999999999999998776 88999999999999999999999999999999
Q ss_pred EEeeCCCC
Q 037453 139 VDFDWGFQ 146 (216)
Q Consensus 139 V~~a~~~~ 146 (216)
|+++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997543
No 68
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.5e-20 Score=128.88 Aligned_cols=83 Identities=20% Similarity=0.356 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++++++|+++|++||.|..|.++.++.+ ++|||||+|.+.++|++|+..||+..++|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 46799999999999999999999999999999999988643 8999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 91 ~~~~~ 95 (103)
T 2cq3_A 91 TARVM 95 (103)
T ss_dssp CSSCC
T ss_pred ccCCC
Confidence 76443
No 69
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.83 E-value=4.2e-20 Score=148.76 Aligned_cols=142 Identities=15% Similarity=0.196 Sum_probs=101.5
Q ss_pred cCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 62 LLASTTVYVGNMSF-YTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 62 ~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
..+.++|||+|||+ ++++++|+++|++||.|..|.+++++ +|||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34679999999999 99999999999999999999998874 7899999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCC----C-----------CCCCCCCCCCCCCCCCC--cccccCCCCCCchhccccchhhHHHhhhcC-C
Q 037453 141 FDWGFQDGRQWGR----G-----------RSGGQVRDEYRTDYDPD--ILLLTLLNFMCWSDVVNISFHRTEAFNSFG-G 202 (216)
Q Consensus 141 ~a~~~~~~~~~~~----~-----------~~~~~~~~~~~~~~~~~--~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG-~ 202 (216)
++........... . +..............++ +.|.|+|.. .++ ++|+++|++|| .
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~------~t~-~~l~~~f~~~G~~ 178 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPS------VSE-EDLKVLFSSNGGV 178 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTT------CCH-HHHHHHHHTTSCC
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCcc------CCH-HHHHHHHHHcCCC
Confidence 9975421110000 0 00000000001111122 344444443 677 89999999999 7
Q ss_pred CCcccccc-ccccC
Q 037453 203 GDAYKSVN-HLICG 215 (216)
Q Consensus 203 ~~~~~~~~-~~~~~ 215 (216)
+..++.+. ..++|
T Consensus 179 i~~v~i~~~~~g~a 192 (229)
T 2adc_A 179 VKGFKFFQKDRKMA 192 (229)
T ss_dssp EEEEEECSSSTTCE
T ss_pred eeEEEEEECCCcEE
Confidence 77776633 44443
No 70
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.4e-20 Score=136.45 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=77.8
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
....++|||+|||+++++++|+++|++||.|..|.+++++.+++++|||||+|.+.++|++|++.||+..++|++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eC
Q 037453 142 DW 143 (216)
Q Consensus 142 a~ 143 (216)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 73
No 71
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.83 E-value=3.8e-20 Score=145.27 Aligned_cols=136 Identities=17% Similarity=0.220 Sum_probs=98.8
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 64 ASTTVYVGNMSF-YTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 64 ~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+++|||+|||+ .+++++|+++|++||.|..|.+++++ +|||||+|.+.++|.+|+..||+..+.|++|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998864 789999999999999999999999999999999998
Q ss_pred CCCCCCCCCCC---------------CCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcC-CCCcc
Q 037453 143 WGFQDGRQWGR---------------GRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFG-GGDAY 206 (216)
Q Consensus 143 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG-~~~~~ 206 (216)
........... .+..............++..++ +.++ +...++ ++|+++|++|| .+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~-v~nl---~~~~~~-~~l~~~f~~~G~~v~~v 151 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLH-LSNI---PPSVSE-EDLKVLFSSNGGVVKGF 151 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEE-ECCC---CTTCCH-HHHHHHHHHTTSCCCEE
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEE-EeCC---CCCCCH-HHHHHHHHHcCCCceEE
Confidence 75421111000 0000011111111122233333 4444 233677 89999999999 88877
Q ss_pred ccc
Q 037453 207 KSV 209 (216)
Q Consensus 207 ~~~ 209 (216)
..+
T Consensus 152 ~i~ 154 (198)
T 1qm9_A 152 KFF 154 (198)
T ss_dssp EES
T ss_pred EEE
Confidence 763
No 72
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.83 E-value=5.2e-21 Score=141.48 Aligned_cols=84 Identities=18% Similarity=0.291 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeE--EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc----eeCCee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKK--IIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGT----ILDDRP 136 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~----~l~g~~ 136 (216)
...++|||+|||+++|+++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..||+. .++|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 46789999999999999999999999999976 99999999999999999999999 999999999999 999999
Q ss_pred EEEEeeCCCCC
Q 037453 137 IRVDFDWGFQD 147 (216)
Q Consensus 137 l~V~~a~~~~~ 147 (216)
|+|+++.+..+
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999976443
No 73
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-20 Score=131.56 Aligned_cols=82 Identities=21% Similarity=0.282 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35689999999999999999999999999998888999999999999999999999999999999999999999999998
Q ss_pred CC
Q 037453 143 WG 144 (216)
Q Consensus 143 ~~ 144 (216)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 74
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=4.8e-20 Score=131.26 Aligned_cols=81 Identities=27% Similarity=0.409 Sum_probs=77.6
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++ +++++|||||+|.+.++|++|++.||+..+.|+.|+|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred eC
Q 037453 142 DW 143 (216)
Q Consensus 142 a~ 143 (216)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 75
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=4e-20 Score=128.79 Aligned_cols=80 Identities=35% Similarity=0.510 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|++||.|..|.++.++. +.++|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4568999999999999999999999999999999999876 889999999999999999999999999999999999998
Q ss_pred C
Q 037453 143 W 143 (216)
Q Consensus 143 ~ 143 (216)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 76
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.2e-20 Score=128.96 Aligned_cols=83 Identities=22% Similarity=0.278 Sum_probs=77.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|+. ++..++|+.|.|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 467899999999999999999999999999999999999999999999999999999999999 578999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 86544
No 77
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=140.98 Aligned_cols=81 Identities=17% Similarity=0.399 Sum_probs=76.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAG--EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
..++|||+|||+++|+++|+++|++|| .|..|+++.|+.+|+++|||||+|.+.++|++||..|||..|+|+.|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eCC
Q 037453 142 DWG 144 (216)
Q Consensus 142 a~~ 144 (216)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 853
No 78
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.9e-20 Score=131.20 Aligned_cols=84 Identities=19% Similarity=0.255 Sum_probs=78.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEe-ecCCCCCcccEEEEEecCHHHHHHHHHHhC--CceeCCeeEEE
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGE-IKKIIMG-LDKNSKTPCGFCFALFYSREDTEDAVKYIS--GTILDDRPIRV 139 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~-~d~~tg~~~g~afV~F~~~~~a~~Al~~l~--g~~l~g~~l~V 139 (216)
+.++|||+|||+++++++|+++|++||. |..+.++ .++.++.++|||||+|.+.++|++|+..|+ +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5789999999999999999999999998 9999998 888999999999999999999999999996 58999999999
Q ss_pred EeeCCCCC
Q 037453 140 DFDWGFQD 147 (216)
Q Consensus 140 ~~a~~~~~ 147 (216)
+++.+...
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99976443
No 79
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=130.23 Aligned_cols=78 Identities=28% Similarity=0.514 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCC
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGF 145 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 145 (216)
++|||+|||+++|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|++|++.||+..+.|+.|+|+++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999886 6899999999999999999999999999999999999875
Q ss_pred CCC
Q 037453 146 QDG 148 (216)
Q Consensus 146 ~~~ 148 (216)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 80
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=5.5e-20 Score=127.33 Aligned_cols=82 Identities=22% Similarity=0.307 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++++++|+++|++||.|..+.+.++ +++++|||||+|.+.++|++|++.||+..+.|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 36799999999999999999999999999999999874 7889999999999999999999999999999999999999
Q ss_pred CCCC
Q 037453 143 WGFQ 146 (216)
Q Consensus 143 ~~~~ 146 (216)
.+..
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7644
No 81
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=129.91 Aligned_cols=82 Identities=27% Similarity=0.342 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++|+++|+++|++||.|..|.+..+ +.++|||||+|.+.++|++|++.||+..+.|+.|+|+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 46789999999999999999999999999999999654 558999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 86544
No 82
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.83 E-value=4.3e-20 Score=134.98 Aligned_cols=82 Identities=29% Similarity=0.446 Sum_probs=78.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+++|+++|+++|++||.|..|.++.|+.++.++|||||+|.+.++|++|+ .|||..++|+.|+|+++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 5689999999999999999999999999999999999999999999999999999999999 799999999999999997
Q ss_pred CCC
Q 037453 144 GFQ 146 (216)
Q Consensus 144 ~~~ 146 (216)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 83
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=2.4e-20 Score=137.68 Aligned_cols=84 Identities=33% Similarity=0.485 Sum_probs=80.0
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
..+.++|||+|||+++++++|+++|++||.|..|.+++|+.+++++|||||+|.+.++|++||+.||+..|+|++|+|++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCC
Q 037453 142 DWGF 145 (216)
Q Consensus 142 a~~~ 145 (216)
+.+.
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9753
No 84
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.2e-20 Score=132.66 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=75.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+++|+++|+++|++||.|.+|.|++|+. |.++|||||+|.+.++|++|+. +++..++|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 458999999999999999999999999999999999987 9999999999999999999999 99999999999999875
Q ss_pred C
Q 037453 144 G 144 (216)
Q Consensus 144 ~ 144 (216)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 85
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-20 Score=130.71 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++|+++|+++|++|| +..|.|++|+ +++++|||||+|.+.++|++||+ +|+..|+|+.|+|..+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3568999999999999999999999999 5599999998 89999999999999999999996 8999999999999998
Q ss_pred CCCC
Q 037453 143 WGFQ 146 (216)
Q Consensus 143 ~~~~ 146 (216)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7544
No 86
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.82 E-value=2.3e-20 Score=130.05 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..+.|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999875
No 87
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=2.1e-20 Score=138.99 Aligned_cols=83 Identities=27% Similarity=0.513 Sum_probs=79.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|+..||+..+.|++|+|+++.
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 037453 144 GFQ 146 (216)
Q Consensus 144 ~~~ 146 (216)
+..
T Consensus 126 ~~~ 128 (135)
T 2lea_A 126 YGR 128 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 88
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=1.5e-20 Score=125.34 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=72.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 67 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
+|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++ ||+..++|++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999999999999999999999999998 9999999999999875
No 89
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1e-20 Score=129.19 Aligned_cols=81 Identities=20% Similarity=0.213 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 037453 143 W 143 (216)
Q Consensus 143 ~ 143 (216)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 90
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.4e-20 Score=130.25 Aligned_cols=78 Identities=18% Similarity=0.297 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC--ceeCCeeEEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG--TILDDRPIRVD 140 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g--~~l~g~~l~V~ 140 (216)
.+.++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|++|++.|++ ..+.|++|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46799999999999999999999999999999999874 69999999999999999998864 78999999999
Q ss_pred eeCCCC
Q 037453 141 FDWGFQ 146 (216)
Q Consensus 141 ~a~~~~ 146 (216)
+|.+..
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 997644
No 91
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6e-20 Score=131.91 Aligned_cols=84 Identities=17% Similarity=0.365 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHH---HHhhccCCeeEEEEeecCCCC---CcccEEEEEecCHHHHHHHHHHhCCceeCCee
Q 037453 63 LASTTVYVGNMSFYTTEEQIY---ELFSRAGEIKKIIMGLDKNSK---TPCGFCFALFYSREDTEDAVKYISGTILDDRP 136 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~d~~tg---~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~ 136 (216)
...++|||+|||+++++++|+ ++|++||.|..|.+++++.++ .++|||||+|.+.++|++|++.||+..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356899999999999999999 999999999999999988754 55699999999999999999999999999999
Q ss_pred EEEEeeCCCC
Q 037453 137 IRVDFDWGFQ 146 (216)
Q Consensus 137 l~V~~a~~~~ 146 (216)
|+|+++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999997644
No 92
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=6.8e-20 Score=140.61 Aligned_cols=85 Identities=21% Similarity=0.338 Sum_probs=79.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|.|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 76443
No 93
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4e-20 Score=130.90 Aligned_cols=83 Identities=27% Similarity=0.502 Sum_probs=79.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.|+|+++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 037453 144 GFQ 146 (216)
Q Consensus 144 ~~~ 146 (216)
+..
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 643
No 94
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=124.67 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++++++|+++|++| .|..|.++++ .+|+++|||||+|.+.++|++|+. ||+..++|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 367899999999999999999999999 9999999999 889999999999999999999999 9999999999999999
Q ss_pred CCC
Q 037453 143 WGF 145 (216)
Q Consensus 143 ~~~ 145 (216)
.+.
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 764
No 95
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=127.52 Aligned_cols=81 Identities=26% Similarity=0.366 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+++++++|+++|++||.| .++.+ .+++++|||||+|.+.++|++|+..||+..+.|+.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 467999999999999999999999999976 56666 67889999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 89 ~~~~~ 93 (101)
T 2fc9_A 89 GPRGS 93 (101)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 86543
No 96
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-20 Score=131.48 Aligned_cols=81 Identities=27% Similarity=0.373 Sum_probs=74.5
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecC-CCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDK-NSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~-~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
....++|||+|||+++++++|+++|+.|| |..|.+++++ .+|+++|||||+|.+.++|.+|+ .|||..++|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34679999999999999999999999999 9999999998 68999999999999999999999 799999999999999
Q ss_pred eeCC
Q 037453 141 FDWG 144 (216)
Q Consensus 141 ~a~~ 144 (216)
++.+
T Consensus 94 ~a~~ 97 (100)
T 2j76_E 94 VADQ 97 (100)
T ss_dssp ECCC
T ss_pred eccC
Confidence 9975
No 97
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-20 Score=125.07 Aligned_cols=76 Identities=25% Similarity=0.446 Sum_probs=73.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
++|||+|||+++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.++ ..++|++|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999999 9999999999986
No 98
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=127.16 Aligned_cols=82 Identities=26% Similarity=0.327 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+++++++|+++|+.|+ .+.++.++.++.++|||||+|.+.++|++||..||+..|.|+.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4679999999999999999999999773 6788889999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 90 ~~~~~ 94 (102)
T 2fc8_A 90 KPKGE 94 (102)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 87544
No 99
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-21 Score=141.52 Aligned_cols=87 Identities=22% Similarity=0.290 Sum_probs=80.9
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKK--------IIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD 133 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~ 133 (216)
..+.++|||+|||+.+++++|+++|++||.|.. |.++.|+.+++++|||||+|.+.++|++|+..||+..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred CeeEEEEeeCCCCCC
Q 037453 134 DRPIRVDFDWGFQDG 148 (216)
Q Consensus 134 g~~l~V~~a~~~~~~ 148 (216)
|++|+|+++.+....
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999865443
No 100
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.81 E-value=3.2e-19 Score=139.54 Aligned_cols=134 Identities=23% Similarity=0.346 Sum_probs=94.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRA----G-------EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTIL 132 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l 132 (216)
..++|||+|||+++|+++|+++|++| | .|..+.+ +.++|||||+|.+.++|++|+ .||+..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 57999999999999999999999999 5 5566655 346899999999999999999 7999999
Q ss_pred CCeeEEEEeeCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 133 DDRPIRVDFDWGFQDGRQWGRGRS-G-GQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 133 ~g~~l~V~~a~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
.|++|.|.++.............. . ..............+.|.|+|.. .++ ++|+++|++||.+..+..+.
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~------~~~-~~l~~~f~~~G~v~~~~~~~ 148 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNY------LND-DQVKELLTSFGPLKAFNLVK 148 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTT------CCH-HHHHHHHHTBSCEEEEEEEE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCC------CCH-HHHHHHHHHcCCccEEEEee
Confidence 999999999876433221110000 0 00001111112222455555543 677 89999999999987776654
Q ss_pred c
Q 037453 211 H 211 (216)
Q Consensus 211 ~ 211 (216)
+
T Consensus 149 ~ 149 (198)
T 2yh0_A 149 D 149 (198)
T ss_dssp C
T ss_pred c
Confidence 4
No 101
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=127.09 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=71.0
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCce--eCCeeEEE
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTI--LDDRPIRV 139 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~--l~g~~l~V 139 (216)
.+++++|||+|||+++|+++|+++|++||.|.++.+++ .||||||+|.+.++|.+|++.|++.. +.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 45789999999999999999999999999999999875 47999999999999999999999865 88999999
Q ss_pred EeeCC
Q 037453 140 DFDWG 144 (216)
Q Consensus 140 ~~a~~ 144 (216)
++|..
T Consensus 92 ~~S~~ 96 (100)
T 3r27_A 92 NYSTS 96 (100)
T ss_dssp EECSC
T ss_pred Eeccc
Confidence 99975
No 102
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=130.65 Aligned_cols=80 Identities=20% Similarity=0.320 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+++++++|+++|+.||.|..|.++.|+.++.++|||||+|.+.++|++|| .||+..|.|+.|.|+++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 4589999999999999999999999999999999999999999999999999999999999 899999999999999986
Q ss_pred C
Q 037453 144 G 144 (216)
Q Consensus 144 ~ 144 (216)
+
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 103
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.81 E-value=2e-20 Score=129.18 Aligned_cols=79 Identities=30% Similarity=0.467 Sum_probs=74.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCC
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGF 145 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~ 145 (216)
++|||+|||+++++++|+++|++||.|..+.+++++.++.++|||||+|.+.+ |.+|+..|||..++|++|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999999753
No 104
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=3.9e-19 Score=129.96 Aligned_cols=83 Identities=28% Similarity=0.405 Sum_probs=78.7
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
....++|||+|||+.+++++|+++|++||.|..|.++.++ +|+++|||||+|.+.++|++|+..||+..++|+.|+|++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred eCCC
Q 037453 142 DWGF 145 (216)
Q Consensus 142 a~~~ 145 (216)
|.+.
T Consensus 111 a~~~ 114 (124)
T 2kt5_A 111 VASQ 114 (124)
T ss_dssp ECCT
T ss_pred eCCC
Confidence 9753
No 105
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.1e-20 Score=131.86 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCe-eEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEI-KKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|++|+ +++++|||||+|.+.++|++||+. |+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 367899999999999999999999999999 899999998 899999999999999999999996 99999999999999
Q ss_pred eCCC
Q 037453 142 DWGF 145 (216)
Q Consensus 142 a~~~ 145 (216)
+.+.
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9653
No 106
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=2e-19 Score=129.65 Aligned_cols=105 Identities=18% Similarity=0.278 Sum_probs=88.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|++||.|..|.++.+. .++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 357899999999999999999999999999999998763 45899999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCC
Q 037453 143 WGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGG 203 (216)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~ 203 (216)
.+.... .+. .....+ ++|+++|++||..
T Consensus 83 ~~~~~~-----------------------------~~~---~~~~~~-~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 83 NANRAF-----------------------------QKM---DTKKKE-EQLKLLKEKYGIN 110 (115)
T ss_dssp CHHHHT-----------------------------TTS---CHHHHH-HHHHHHHHHHCCC
T ss_pred cCChhh-----------------------------hhh---hHhHhH-HHHHHHHHHhCCC
Confidence 642210 111 233555 7899999999964
No 107
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=5.9e-19 Score=124.89 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|++|++.||+..+.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 467899999999999999999999999999999985 469999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 037453 143 WGFQDGR 149 (216)
Q Consensus 143 ~~~~~~~ 149 (216)
.+.....
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 8755443
No 108
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=134.07 Aligned_cols=81 Identities=26% Similarity=0.404 Sum_probs=77.0
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
..+.++|||+|||+.+++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.||+..++|++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred e
Q 037453 142 D 142 (216)
Q Consensus 142 a 142 (216)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 109
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.80 E-value=2.1e-19 Score=140.37 Aligned_cols=87 Identities=21% Similarity=0.295 Sum_probs=76.3
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
....++|||+|||+++|+++|+++|++||.|..|.++.|+.++.++|||||+|.+.++|.+|+.. ++..++|+.|.|.+
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 34668999999999999999999999999999999999999999999999999999999999995 89999999999999
Q ss_pred eCCCCCCC
Q 037453 142 DWGFQDGR 149 (216)
Q Consensus 142 a~~~~~~~ 149 (216)
+.+.....
T Consensus 180 a~~k~~~~ 187 (196)
T 1l3k_A 180 ALSKQEMA 187 (196)
T ss_dssp CC------
T ss_pred cCChhHhc
Confidence 98755443
No 110
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.8e-19 Score=122.28 Aligned_cols=77 Identities=19% Similarity=0.284 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+++++++|+++|++||.|..+.++ +|||||+|.+.++|++|+..||+..+.|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 367999999999999999999999999999999986 589999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86544
No 111
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.1e-19 Score=125.71 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=74.8
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 61 ALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 61 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
.....++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|+..||+..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4557789999999999999999999999999999999875 7999999999999999999999999999999999
Q ss_pred eeCCCCC
Q 037453 141 FDWGFQD 147 (216)
Q Consensus 141 ~a~~~~~ 147 (216)
++.+...
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9976543
No 112
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.9e-19 Score=122.87 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
.+.-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++.||+..+.|++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999865 68999999999999999999999999999999999983
No 113
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.80 E-value=1.8e-20 Score=144.18 Aligned_cols=119 Identities=16% Similarity=0.132 Sum_probs=94.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++|+++|+++|..||.+.. .++.+..++.++|||||+|.+.++|.+|++ ||+..+.|++|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 46799999999999999999999999998766 345556678899999999999999999995 9999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCcc
Q 037453 143 WGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAY 206 (216)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~ 206 (216)
.+.... .......+.|.|+|.. .++ ++|+++|++||.+...
T Consensus 89 ~~~~~~----------------~~~~~~~l~v~nlp~~------~t~-~~l~~~F~~~g~v~~~ 129 (175)
T 1fje_B 89 KGRDSK----------------KVRAARTLLAKNLSFN------ITE-DELKEVFEDALEIRLV 129 (175)
T ss_dssp CCSSCS----------------TTGGGGEEEEESCCSS------CCH-HHHHHHCTTCSEEEEE
T ss_pred CCcccc----------------ccccCCEEEEeCCCCC------CCH-HHHHHHHHhcCeEEEe
Confidence 653211 0011122555566554 677 8999999999977554
No 114
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=126.66 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc--eeCCeeEEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGT--ILDDRPIRVD 140 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~--~l~g~~l~V~ 140 (216)
.+.++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|++.|++. .+.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46789999999999999999999999999999998763 799999999999999999988764 5999999999
Q ss_pred eeCCCCC
Q 037453 141 FDWGFQD 147 (216)
Q Consensus 141 ~a~~~~~ 147 (216)
++.....
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9976443
No 115
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.6e-20 Score=132.55 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+.+|+++|+++|++||.|..+.+..+..+++++|||||+|.+.++|++|+..||+..+.|++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 36799999999999999999999999999843332222237889999999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 86544
No 116
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=127.55 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC--ceeCCeeEEE
Q 037453 63 LASTTVYVGNMSF-YTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG--TILDDRPIRV 139 (216)
Q Consensus 63 ~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g--~~l~g~~l~V 139 (216)
.+.++|||+|||+ ++|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|++|++.||+ ..|.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3678999999999 9999999999999999999999864 58999999999999999999986 4599999999
Q ss_pred EeeCCCC
Q 037453 140 DFDWGFQ 146 (216)
Q Consensus 140 ~~a~~~~ 146 (216)
.+|...+
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9997543
No 117
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.5e-19 Score=124.21 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh--CCceeCCeeEEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI--SGTILDDRPIRVD 140 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l--~g~~l~g~~l~V~ 140 (216)
.+.++|||+|||+.+++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|++.| ++..+.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46789999999999999999999999999999988764 799999999999999999977 4678999999999
Q ss_pred eeCCCC
Q 037453 141 FDWGFQ 146 (216)
Q Consensus 141 ~a~~~~ 146 (216)
++....
T Consensus 87 ~a~~~~ 92 (101)
T 2cq1_A 87 YSNHKE 92 (101)
T ss_dssp ECSCSS
T ss_pred EcCccc
Confidence 997543
No 118
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=128.25 Aligned_cols=81 Identities=21% Similarity=0.339 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee--------CC
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTIL--------DD 134 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l--------~g 134 (216)
...++|||+|||+.+++++|+++|++||.|..|.++.++ ++.++|||||+|.+.++|++|+..|||..+ .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 367899999999999999999999999999999999998 899999999999999999999999999999 57
Q ss_pred eeEEEEeeCC
Q 037453 135 RPIRVDFDWG 144 (216)
Q Consensus 135 ~~l~V~~a~~ 144 (216)
++|.|.++.+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 8899999874
No 119
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.80 E-value=1.5e-19 Score=130.73 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCee-----EE
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRP-----IR 138 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~-----l~ 138 (216)
..++|||+|||+++++++|+++|++||+|..|.|+.+ |||||+|.+.++|++||+.||+..|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 5689999999999999999999999999999999765 89999999999999999999999999988 88
Q ss_pred EEeeCCCCCCCCCCCC
Q 037453 139 VDFDWGFQDGRQWGRG 154 (216)
Q Consensus 139 V~~a~~~~~~~~~~~~ 154 (216)
|..+.+....+..+++
T Consensus 88 v~~~~~~~~~~~r~rs 103 (115)
T 3beg_B 88 VKVDGPRSPSYGRSRS 103 (115)
T ss_dssp EEECC----CCCCSCC
T ss_pred eccCCCCCCCCCCCCC
Confidence 8887765544443333
No 120
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.80 E-value=4.1e-19 Score=135.89 Aligned_cols=116 Identities=24% Similarity=0.400 Sum_probs=94.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRA----G-------EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTIL 132 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l 132 (216)
+.++|||+|||+++|+++|+++|++| | .|.++.+.+ ++|||||+|.++++|++|+ .||+..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 56899999999999999999999999 6 677777643 5799999999999999999 7999999
Q ss_pred CCeeEEEEeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 133 DDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 133 ~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
.|++|.|.++....... ....+.|.|+|.. .++ ++|+++|++||.+.....+.+
T Consensus 76 ~g~~i~v~~~~~~~~~~------------------~~~~l~v~nlp~~------~t~-~~l~~~f~~~G~v~~v~i~~~ 129 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPLP------------------GAHKLFIGGLPNY------LND-DQVKELLTSFGPLKAFNLVKD 129 (172)
T ss_dssp TTEECEEECCSSCCCCT------------------TTTCEEEECCCTT------CCH-HHHHHHHHTTSCEEEEEEEEC
T ss_pred cCceeeecCCcccCCCC------------------CCCEEEEEcCCCc------CCH-HHHHHHHHhcCCceEEEEEec
Confidence 99999999875422110 0223566666664 677 889999999999887766544
No 121
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.4e-19 Score=124.16 Aligned_cols=78 Identities=28% Similarity=0.493 Sum_probs=71.6
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRA--GEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 139 (216)
....++|||+|||+.+|+++|+++|++| |.|..+.+ .+|||||+|.+.++|++|+..||+..+.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK--------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE--------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4567999999999999999999999999 99999887 3679999999999999999999999999999999
Q ss_pred EeeCCCCC
Q 037453 140 DFDWGFQD 147 (216)
Q Consensus 140 ~~a~~~~~ 147 (216)
+++.+...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99976543
No 122
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=128.79 Aligned_cols=81 Identities=21% Similarity=0.388 Sum_probs=75.6
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
....++|||+|||+++++++|+++|++||.|..|.++.++ +.++|||||+|.+.++|++|++.|||..++|++|+|++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3467999999999999999999999999999999999885 34899999999999999999999999999999999999
Q ss_pred eCC
Q 037453 142 DWG 144 (216)
Q Consensus 142 a~~ 144 (216)
+.+
T Consensus 104 a~~ 106 (109)
T 2err_A 104 ATA 106 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 123
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.80 E-value=2e-19 Score=147.61 Aligned_cols=112 Identities=29% Similarity=0.382 Sum_probs=96.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++|+++|+++|++||.|..|.+.+ ++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 3568999999999999999999999999999999965 4799999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 143 WGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
.+ ...+.|.|+|.. .++ ++|+++|++||.+..+..+.+
T Consensus 94 ~~------------------------~~~l~v~nl~~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 131 (261)
T 3sde_A 94 TH------------------------GAALTVKNLSPV------VSN-ELLEQAFSQFGPVEKAVVVVD 131 (261)
T ss_dssp CC------------------------SSEEEEESCCTT------CCH-HHHHHHHGGGSCEEEEEEEEE
T ss_pred cc------------------------CCcccccCCCCC------CCH-HHHHHHHHhcCCeEEEEeeeC
Confidence 53 112566666654 677 899999999999887766544
No 124
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.5e-19 Score=125.86 Aligned_cols=80 Identities=21% Similarity=0.230 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKK-IIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
...++|||+|||+++|+++|+++|++||.|.. |.|+.| .+|+++|||||+|.+.++|++||.. ++..++|+.|.|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 36789999999999999999999999999987 888888 7899999999999999999999996 99999999999999
Q ss_pred eCC
Q 037453 142 DWG 144 (216)
Q Consensus 142 a~~ 144 (216)
+..
T Consensus 91 ~~~ 93 (104)
T 1wg5_A 91 SSR 93 (104)
T ss_dssp ECT
T ss_pred CCH
Confidence 864
No 125
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=127.88 Aligned_cols=79 Identities=24% Similarity=0.327 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCCCC------CHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCe-e
Q 037453 64 ASTTVYVGNMSFYT------TEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDR-P 136 (216)
Q Consensus 64 ~~~~l~V~nLp~~~------te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~-~ 136 (216)
..++|||+|||+.+ |+++|+++|++||.|..|.++ +.+|+++|||||+|.+.++|.+|+..|||..+.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 56899999999999 789999999999999999988 47889999999999999999999999999999998 9
Q ss_pred EEEEeeCC
Q 037453 137 IRVDFDWG 144 (216)
Q Consensus 137 l~V~~a~~ 144 (216)
|+|.++..
T Consensus 92 l~V~~a~~ 99 (105)
T 2nlw_A 92 FRVNLFTD 99 (105)
T ss_dssp EEEECSCC
T ss_pred EEEEEcch
Confidence 99999864
No 126
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=7e-20 Score=122.05 Aligned_cols=75 Identities=25% Similarity=0.430 Sum_probs=71.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 67 TVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 67 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
+|||+|||+++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|++|++ +++..+.|++|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999999999999999999999999999999 5899999999999875
No 127
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.1e-18 Score=130.82 Aligned_cols=81 Identities=20% Similarity=0.387 Sum_probs=78.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+..|||..++|++|+|.+|
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 037453 143 W 143 (216)
Q Consensus 143 ~ 143 (216)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 128
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.79 E-value=1e-19 Score=123.34 Aligned_cols=74 Identities=26% Similarity=0.379 Sum_probs=68.6
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCe-eE
Q 037453 65 STTVYVGNMSFYT------TEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDR-PI 137 (216)
Q Consensus 65 ~~~l~V~nLp~~~------te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~-~l 137 (216)
+++|||+|||+.+ ++++|+++|++||.|..+.++ +.+|+++|||||+|.+.++|++|+..|||..++|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 779999999999999999987 46889999999999999999999999999999999 88
Q ss_pred EEE
Q 037453 138 RVD 140 (216)
Q Consensus 138 ~V~ 140 (216)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 129
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.6e-19 Score=128.23 Aligned_cols=78 Identities=18% Similarity=0.297 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC--ceeCCeeEEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG--TILDDRPIRVD 140 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g--~~l~g~~l~V~ 140 (216)
.+.++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++ ..+.|++|+|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 46789999999999999999999999999999999874 79999999999999999998884 68999999999
Q ss_pred eeCCCC
Q 037453 141 FDWGFQ 146 (216)
Q Consensus 141 ~a~~~~ 146 (216)
+|.+..
T Consensus 103 ~a~~k~ 108 (119)
T 2ad9_A 103 FSNHKE 108 (119)
T ss_dssp ECSSSS
T ss_pred EccCCC
Confidence 997644
No 130
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.1e-19 Score=124.81 Aligned_cols=78 Identities=18% Similarity=0.367 Sum_probs=71.2
Q ss_pred cCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 62 LLASTTVYVGNMSF-YTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 62 ~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
..+.++|||+|||+ .+++++|+++|++||.|..|.+ ++|||||+|.+.++|++|+..||+..+.|++|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE--------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35789999999999 9999999999999999999998 36899999999999999999999999999999999
Q ss_pred eeCCCCC
Q 037453 141 FDWGFQD 147 (216)
Q Consensus 141 ~a~~~~~ 147 (216)
++.+...
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9976443
No 131
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-20 Score=130.77 Aligned_cols=82 Identities=18% Similarity=0.230 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++|+++|+++|++||.|.. .++.++.++.++|||||+|.+.++|++|++ ||+..+.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999887 677777889999999999999999999999 9999999999999999
Q ss_pred CCCC
Q 037453 143 WGFQ 146 (216)
Q Consensus 143 ~~~~ 146 (216)
.+..
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 132
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.79 E-value=2.9e-18 Score=135.78 Aligned_cols=86 Identities=20% Similarity=0.247 Sum_probs=81.4
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 61 ALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 61 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
.....++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|||..|+|+.|.|.
T Consensus 121 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~ 200 (216)
T 2qfj_A 121 EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 200 (216)
T ss_dssp HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEE
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCC
Q 037453 141 FDWGFQ 146 (216)
Q Consensus 141 ~a~~~~ 146 (216)
++.+..
T Consensus 201 ~a~~~~ 206 (216)
T 2qfj_A 201 KAVTPP 206 (216)
T ss_dssp ECSSCS
T ss_pred EecCCC
Confidence 998654
No 133
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=4.1e-19 Score=127.65 Aligned_cols=79 Identities=14% Similarity=0.003 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAG-EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
...++|||+|||+++++++|+++|++|| +|..+.+..+ .++|||||+|.+.++|++||+.|||..++|+.|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3568999999999999999999999999 8999988542 4789999999999999999999999999999999999
Q ss_pred eCCC
Q 037453 142 DWGF 145 (216)
Q Consensus 142 a~~~ 145 (216)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8643
No 134
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=119.78 Aligned_cols=77 Identities=21% Similarity=0.268 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|++||.|..|.+++ +||||+|.+.++|++|+..||+..+.|+.|+|+++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4679999999999999999999999999999999963 59999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 76543
No 135
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.1e-19 Score=122.77 Aligned_cols=78 Identities=26% Similarity=0.328 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC--CeeEEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD--DRPIRVD 140 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~--g~~l~V~ 140 (216)
.+.++|||+|||+++++++|+++|++||.|..|.+..+ +|||||+|.+.++|++|++.||+..+. |+.|+|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 36689999999999999999999999999999998753 689999999999999999999999999 9999999
Q ss_pred eeCCCC
Q 037453 141 FDWGFQ 146 (216)
Q Consensus 141 ~a~~~~ 146 (216)
++.+.+
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 997643
No 136
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=4.2e-19 Score=128.94 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGE---IKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 139 (216)
...++|||+|||+++|+++|+++|+.||. |..|+|++|+. |+++|||||+|.+.++|++||+ +|+..|+|+.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 36789999999999999999999999999 89999999987 8999999999999999999999 9999999999999
Q ss_pred EeeCC
Q 037453 140 DFDWG 144 (216)
Q Consensus 140 ~~a~~ 144 (216)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99853
No 137
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.79 E-value=1.4e-18 Score=121.79 Aligned_cols=76 Identities=18% Similarity=0.373 Sum_probs=70.7
Q ss_pred hcCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 037453 61 ALLASTTVYVGNMSF-YTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139 (216)
Q Consensus 61 ~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 139 (216)
..+..++|||+|||+ ++++++|+++|++||.|..+.+ ++|||||+|.+.++|.+|+..|||..++|++|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345789999999998 9999999999999999999998 3799999999999999999999999999999999
Q ss_pred EeeCC
Q 037453 140 DFDWG 144 (216)
Q Consensus 140 ~~a~~ 144 (216)
+++.+
T Consensus 90 ~~a~~ 94 (97)
T 2xnq_A 90 EVSSS 94 (97)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 99865
No 138
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=9.3e-19 Score=125.19 Aligned_cols=78 Identities=22% Similarity=0.399 Sum_probs=72.2
Q ss_pred hcCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 61 ALLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 61 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
.....++|||+|||+++++++|+++|++||.|..|.+. +|||||+|.+.++|++|+..|||..++|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34578999999999999999999999999999999986 6899999999999999999999999999999999
Q ss_pred eeCCCC
Q 037453 141 FDWGFQ 146 (216)
Q Consensus 141 ~a~~~~ 146 (216)
++.+..
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 997643
No 139
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=3.9e-19 Score=143.42 Aligned_cols=80 Identities=19% Similarity=0.278 Sum_probs=76.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAG--EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
..++|||+|||+++|+++|+++|++|| .|..|.|++|+.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eC
Q 037453 142 DW 143 (216)
Q Consensus 142 a~ 143 (216)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 140
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=9.3e-19 Score=128.76 Aligned_cols=80 Identities=21% Similarity=0.320 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIY----ELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIR 138 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 138 (216)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+. .+++++|||||+|.+.++|.+|+..|||..+.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 457899999999999999876 699999999998874 3678999999999999999999999999999999999
Q ss_pred EEeeCCC
Q 037453 139 VDFDWGF 145 (216)
Q Consensus 139 V~~a~~~ 145 (216)
|.+|.+.
T Consensus 104 V~~a~~~ 110 (127)
T 2a3j_A 104 ITFSETP 110 (127)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999753
No 141
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=121.98 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+.+++++|+++|++||.|..|.+.+ .+|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 4678999999999999999999999999999999975 3799999999999999999999999999999999999
Q ss_pred CCCC
Q 037453 143 WGFQ 146 (216)
Q Consensus 143 ~~~~ 146 (216)
.+..
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7643
No 142
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=119.94 Aligned_cols=76 Identities=21% Similarity=0.330 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++|+++|+++|++||.|..|.+++ +||||+|.+.++|++|+..||+..+.|++|+|+++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4678999999999999999999999999999999963 59999999999999999999999999999999999
Q ss_pred CCCC
Q 037453 143 WGFQ 146 (216)
Q Consensus 143 ~~~~ 146 (216)
.+..
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 143
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=3.6e-19 Score=132.42 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGE---IKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 139 (216)
...++|||+|||+++|+++|+++|++||. |..|.|++|+. |+++|||||+|.+.++|++||+ ||+..|+|+.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 46789999999999999999999999999 88999999987 9999999999999999999999 9999999999999
Q ss_pred EeeC
Q 037453 140 DFDW 143 (216)
Q Consensus 140 ~~a~ 143 (216)
..+.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 9985
No 144
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=120.06 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+++|+++|+++|++||.|..| +.++.+++ ||||+|.+.++|++|+. ||+..++|+.|.|+++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 56899999999999999999999999999987 66666665 99999999999999999 99999999999999886
Q ss_pred CCC
Q 037453 144 GFQ 146 (216)
Q Consensus 144 ~~~ 146 (216)
...
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
No 145
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.5e-19 Score=121.68 Aligned_cols=78 Identities=19% Similarity=0.322 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC-ceeCCeeEEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGE-IKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG-TILDDRPIRVD 140 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g-~~l~g~~l~V~ 140 (216)
...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||+ ..++|++|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 36789999999999999999999999999 6655552 579999999999999999999999 99999999999
Q ss_pred eeCCCCC
Q 037453 141 FDWGFQD 147 (216)
Q Consensus 141 ~a~~~~~ 147 (216)
++.+...
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9986443
No 146
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-19 Score=131.29 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++|+++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|++||. ||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 366899999999999999999999999999887777777899999999999999999999999 9999999999999998
Q ss_pred CC
Q 037453 143 WG 144 (216)
Q Consensus 143 ~~ 144 (216)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 147
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=1.3e-19 Score=135.30 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=75.1
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
....++|||+|||+++|+++|+++|++|| |..|.|++|+. ++++|||||+|.+.++|++|| .+|+..|+|+.|.|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999 77999999976 999999999999999999999 6999999999999999
Q ss_pred eCCCCC
Q 037453 142 DWGFQD 147 (216)
Q Consensus 142 a~~~~~ 147 (216)
+.....
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876443
No 148
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=124.48 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=71.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..+|||+|||+++|+++|+++|++| .|..|.|++|+. |+++|||||+|.+.++|++|| .+|+..|+|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4799999999999999999999999 899999999976 899999999999999999999 499999999999998875
No 149
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.77 E-value=6.8e-19 Score=134.68 Aligned_cols=79 Identities=20% Similarity=0.406 Sum_probs=76.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
..++|||+|||+.+|+++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+..|||..++|++|.|++|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999987
No 150
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=5.3e-19 Score=123.38 Aligned_cols=79 Identities=25% Similarity=0.375 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|++|+..||+..+.|++|+|+++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 356899999999999999999999999988766 356789999999999999999999999999999999999999
Q ss_pred CCCC
Q 037453 143 WGFQ 146 (216)
Q Consensus 143 ~~~~ 146 (216)
.+..
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7643
No 151
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.77 E-value=1e-18 Score=145.01 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=96.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAG-EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
..++|||+|||+.+++++|+++|++|| .|..|.++.++. +.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 579999999999999999999999999 999999998876 778999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhc-cccchhhHHHhhhcCCCCccccccc
Q 037453 143 WGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDV-VNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~-~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
.+....... .........+.|.|+|. . .++ ++|+++|++||.+..+..+.+
T Consensus 195 ~~~~~~~~~-----------~~~~~~~~~l~v~nlp~------~~~t~-~~l~~~F~~~G~v~~v~i~~~ 246 (292)
T 2ghp_A 195 NPLEKSKRT-----------DSATLEGREIMIRNLST------ELLDE-NLLRESFEGFGSIEKINIPAG 246 (292)
T ss_dssp CCC--------------------CCTTTEEEEEEECT------TTCCH-HHHHHHHGGGSCEEEEECCSC
T ss_pred CCCcccccc-----------cccCCCCceEEEECCCc------ccCCH-HHHHHHHhccCCeeEEEEEec
Confidence 764332111 00011112244554443 3 566 889999999999888777654
No 152
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.77 E-value=2.3e-18 Score=123.22 Aligned_cols=76 Identities=16% Similarity=0.348 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 64 ASTTVYVGNMSFY-TTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 64 ~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
..++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+|.+.++|++|++.||+..++|+.|+|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 5689999999999 999999999999999999988 5799999999999999999999999999999999999
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+.+.
T Consensus 98 ~~~~~ 102 (110)
T 1wf1_A 98 GEPKP 102 (110)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 75433
No 153
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.77 E-value=8.3e-19 Score=122.53 Aligned_cols=80 Identities=23% Similarity=0.425 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIY----ELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIR 138 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 138 (216)
.+.++|||+|||+++++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 467999999999999999999 9999999999998863 567899999999999999999999999999999999
Q ss_pred EEeeCCC
Q 037453 139 VDFDWGF 145 (216)
Q Consensus 139 V~~a~~~ 145 (216)
|+++.+.
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999753
No 154
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.4e-19 Score=127.47 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=70.9
Q ss_pred cCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC--ceeCCeeEE
Q 037453 62 LLASTTVYVGNMSFY-TTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG--TILDDRPIR 138 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g--~~l~g~~l~ 138 (216)
..+.++|||+|||++ +++++|+++|++||.|.+|.|++ ++|||||+|.+.++|++|++.|++ ..+.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 346899999999998 99999999999999999999974 579999999999999999998864 569999999
Q ss_pred EEeeCCCC
Q 037453 139 VDFDWGFQ 146 (216)
Q Consensus 139 V~~a~~~~ 146 (216)
|.+|....
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997543
No 155
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=3.5e-18 Score=149.90 Aligned_cols=84 Identities=31% Similarity=0.440 Sum_probs=79.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+.|+.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 037453 143 WGFQ 146 (216)
Q Consensus 143 ~~~~ 146 (216)
.+..
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7643
No 156
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.77 E-value=2e-18 Score=142.75 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=94.8
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
..+.++|||+|||+++|+++|+++|+.|| |..+.+ ++++|||||+|.+.++|.+|+..||+..+.|++|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 34779999999999999999999999999 999888 35789999999999999999999999999999999998
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 142 DWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.. ...+.|.|+|.. .++ ++|+++|++||.+.....+.
T Consensus 92 ~~~------------------------~~~l~v~nlp~~------~t~-~~l~~~f~~~G~i~~~~i~~ 129 (284)
T 3smz_A 92 QPT------------------------DALLCVANLPPS------LTQ-QQFEELVRPFGSLERCFLVY 129 (284)
T ss_dssp CCC------------------------SCEEEEESCCTT------CCH-HHHHHHHGGGSCEEEEEEEE
T ss_pred cCC------------------------CCEEEEcCCCCc------CCH-HHHHHHHHhcCCeeEEEEEe
Confidence 531 022566666654 677 89999999999988776553
No 157
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.5e-18 Score=122.22 Aligned_cols=76 Identities=22% Similarity=0.365 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++++++|+++|++||.|.++.+.. ++|||||+|.+.++|++|+..|||..++|+.|+|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3468999999999999999999999999999999873 6799999999999999999999999999999999998
Q ss_pred CC
Q 037453 143 WG 144 (216)
Q Consensus 143 ~~ 144 (216)
.+
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 158
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=121.14 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|++||.|. +.++.+ .++|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3578999999999999999999999999997 666653 57899999999999999999999999999999999999
Q ss_pred CCC
Q 037453 143 WGF 145 (216)
Q Consensus 143 ~~~ 145 (216)
.+.
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 159
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=117.90 Aligned_cols=75 Identities=27% Similarity=0.353 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh-CCceeCCeeEEEEe
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI-SGTILDDRPIRVDF 141 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l-~g~~l~g~~l~V~~ 141 (216)
...++|||+|||+.+++++|+++|++||.|..+.+++ ++|||||+|.+.++|++|+..| ++..+.|++|+|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 3678999999999999999999999999999999986 4799999999999999999999 99999999999998
Q ss_pred eC
Q 037453 142 DW 143 (216)
Q Consensus 142 a~ 143 (216)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 160
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=5.9e-18 Score=134.73 Aligned_cols=80 Identities=23% Similarity=0.366 Sum_probs=74.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
...+|||+|||+.+|+++|+++|++||.|..|++++|. +.++|||||+|.+.++|++||+.|||..|+|++|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 56899999999999999999999999999999999985 3479999999999999999999999999999999999997
Q ss_pred CC
Q 037453 144 GF 145 (216)
Q Consensus 144 ~~ 145 (216)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 53
No 161
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.76 E-value=2.7e-18 Score=142.54 Aligned_cols=114 Identities=12% Similarity=0.101 Sum_probs=95.2
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
....++|||+|||+++|+++|+++|+.||.|..|.+++++.+ ++|||||+|.+.++|.+|++ +|+..+.|+.|.|.+
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSH 114 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEE
Confidence 456899999999999999999999999999999999998754 57999999999999999996 999999999999998
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccccchhhHHHhhhcC-CCCcccccc
Q 037453 142 DWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVNISFHRTEAFNSFG-GGDAYKSVN 210 (216)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG-~~~~~~~~~ 210 (216)
+. ...+.|.|+|.. .++ ++|+++|++|| .+..+..+.
T Consensus 115 ~~-------------------------~~~l~v~nlp~~------~t~-~~l~~~f~~~G~~i~~v~i~~ 152 (292)
T 2ghp_A 115 LT-------------------------ECTLWMTNFPPS------YTQ-RNIRDLLQDINVVALSIRLPS 152 (292)
T ss_dssp CC-------------------------SCEEEEECCCTT------CCH-HHHHHHHHHTTCCCCEEECC-
T ss_pred CC-------------------------CCEEEEECCCCC------CCH-HHHHHHHHHhCCCeEEEEEEe
Confidence 62 122566666654 677 88999999999 888777654
No 162
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=1.7e-18 Score=130.68 Aligned_cols=79 Identities=27% Similarity=0.441 Sum_probs=74.0
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
....++|||+|||+.+|+++|+++|++||.|..|.++++ ++|||||+|.+.++|.+|+..|||..+.|++|+|++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346799999999999999999999999999999999876 589999999999999999999999999999999999
Q ss_pred eCCC
Q 037453 142 DWGF 145 (216)
Q Consensus 142 a~~~ 145 (216)
+.+.
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9753
No 163
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=2.4e-18 Score=131.69 Aligned_cols=78 Identities=23% Similarity=0.335 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC---CeeEEEE
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD---DRPIRVD 140 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~---g~~l~V~ 140 (216)
..++|||+|||+.+|+++|+++|++||.|..+.+++++ +|.++|||||+|.+.++|.+|++.|||..+. +++|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 56899999999999999999999999999999999985 5889999999999999999999999998776 4999999
Q ss_pred ee
Q 037453 141 FD 142 (216)
Q Consensus 141 ~a 142 (216)
+|
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 87
No 164
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=4e-19 Score=126.75 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGE---IKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 139 (216)
...++|||+|||+++|+++|+++|+.||. |..|.+++|+. |+++|||||+|.+.++|++||. +|+..++|+.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 46789999999999999999999999988 89999999987 9999999999999999999999 9999999999999
Q ss_pred EeeCC
Q 037453 140 DFDWG 144 (216)
Q Consensus 140 ~~a~~ 144 (216)
.++.+
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 99864
No 165
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=2.1e-18 Score=131.30 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+.+++++|+++|++||.|..+.++.|+.+|.++|||||+|.+.++|.+|++ +++..++|++|.|.+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46899999999999999999999999999999999999999999999999999999999998 89999999999999997
Q ss_pred C
Q 037453 144 G 144 (216)
Q Consensus 144 ~ 144 (216)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 166
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.2e-18 Score=125.38 Aligned_cols=78 Identities=22% Similarity=0.172 Sum_probs=71.9
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecC----HHH----HHHHHH--HhCCce
Q 037453 66 TTVYVGNM----SFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYS----RED----TEDAVK--YISGTI 131 (216)
Q Consensus 66 ~~l~V~nL----p~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~----~~~----a~~Al~--~l~g~~ 131 (216)
..|||+|| |+.+++++|+++|++||+|.++.++.|+.||.++|||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 433 888988 789999
Q ss_pred eCCeeEEEEeeC
Q 037453 132 LDDRPIRVDFDW 143 (216)
Q Consensus 132 l~g~~l~V~~a~ 143 (216)
|+|++|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999874
No 167
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=6.9e-19 Score=124.20 Aligned_cols=79 Identities=23% Similarity=0.416 Sum_probs=75.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+++++++|+++|++||.|..|.++.|+ ++.++|||||+|.+.++|++|+. ++..++|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 56899999999999999999999999999999999998 99999999999999999999999 9999999999999986
Q ss_pred CC
Q 037453 144 GF 145 (216)
Q Consensus 144 ~~ 145 (216)
+.
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 168
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.75 E-value=3.8e-18 Score=132.47 Aligned_cols=81 Identities=28% Similarity=0.418 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|.|+.|+|++|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred CC
Q 037453 143 WG 144 (216)
Q Consensus 143 ~~ 144 (216)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=1.3e-17 Score=126.84 Aligned_cols=80 Identities=25% Similarity=0.471 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC--eeEEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDD--RPIRVD 140 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g--~~l~V~ 140 (216)
...++|||+|||..+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|+..|||..+.| ++|+|+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 356899999999999999999999999999999999999899999999999999999999999999999988 999999
Q ss_pred ee
Q 037453 141 FD 142 (216)
Q Consensus 141 ~a 142 (216)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 170
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.4e-18 Score=125.04 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=73.7
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCe----eEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEI----KKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPI 137 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i----~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l 137 (216)
.....+|||+|||+++|+++|+++|++||.| ..|.|+.| .+|+++|||||+|.+.++|++||+. |+..++|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999999999999999999999975 68999998 5899999999999999999999995 9999999999
Q ss_pred EEEeeC
Q 037453 138 RVDFDW 143 (216)
Q Consensus 138 ~V~~a~ 143 (216)
.|..+.
T Consensus 98 ~V~~a~ 103 (123)
T 2dha_A 98 ELFRST 103 (123)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 999885
No 171
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=9.7e-19 Score=130.94 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEE--E---eecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKII--M---GLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPI 137 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~--i---~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l 137 (216)
.+.++|||+|||+.+|+++|+++|++||.|..+. + +....+++++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3678999999999999999999999999987641 1 1113468899999999999999999999999999999999
Q ss_pred EEEeeCCCC
Q 037453 138 RVDFDWGFQ 146 (216)
Q Consensus 138 ~V~~a~~~~ 146 (216)
.|.+|.+..
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999997543
No 172
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.74 E-value=1.9e-17 Score=125.64 Aligned_cols=79 Identities=25% Similarity=0.383 Sum_probs=74.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCee--EEEEe
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRP--IRVDF 141 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~--l~V~~ 141 (216)
..++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+. |.|++
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999965 78877
Q ss_pred e
Q 037453 142 D 142 (216)
Q Consensus 142 a 142 (216)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 173
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.74 E-value=2.9e-18 Score=125.84 Aligned_cols=78 Identities=27% Similarity=0.257 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCee--EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIK--KIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
...++|||+|||+++|+++|+++|++| .|. .|.|++|+. |+++|||||+|.+.++|++||+ +++..|+|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 457899999999999999999999999 677 899999987 9999999999999999999999 57899999999999
Q ss_pred eeC
Q 037453 141 FDW 143 (216)
Q Consensus 141 ~a~ 143 (216)
.+.
T Consensus 117 ~a~ 119 (126)
T 2hgm_A 117 KSS 119 (126)
T ss_dssp EEC
T ss_pred ECC
Confidence 875
No 174
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-18 Score=121.85 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+.+++++|+++|++||.|..|.++. ++|||||+|.+.++|++|+..|||..+.|++|.|+++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999998864 67899999999999999999999999999999999996
Q ss_pred C
Q 037453 144 G 144 (216)
Q Consensus 144 ~ 144 (216)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 175
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-17 Score=114.18 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
.+.++|||+|| ++|+++|+++|++||.|..|.+. .++|||||+|.+.++|++|+..||+..+.|++|+|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 36789999996 89999999999999999999984 47899999999999999999999999999999999999
Q ss_pred CCCC
Q 037453 143 WGFQ 146 (216)
Q Consensus 143 ~~~~ 146 (216)
.+..
T Consensus 85 ~~~~ 88 (97)
T 1x5p_A 85 RKQP 88 (97)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7643
No 176
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.8e-18 Score=120.61 Aligned_cols=77 Identities=17% Similarity=0.321 Sum_probs=69.7
Q ss_pred CCcEEEE--cCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee-----CCee
Q 037453 64 ASTTVYV--GNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTIL-----DDRP 136 (216)
Q Consensus 64 ~~~~l~V--~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l-----~g~~ 136 (216)
+.++||| +||++++++++|+++|++||.|..|.++. .+|||||+|.+.++|++|++.|||..+ .|++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 5689999 77999999999999999999999998854 379999999999999999999999988 6899
Q ss_pred EEEEeeCCCC
Q 037453 137 IRVDFDWGFQ 146 (216)
Q Consensus 137 l~V~~a~~~~ 146 (216)
|.|.++...+
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999997533
No 177
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.73 E-value=9.2e-18 Score=135.70 Aligned_cols=133 Identities=17% Similarity=0.112 Sum_probs=92.0
Q ss_pred heeeeccccccceeeeecchhhHHHHHhhhhcccccchhhcCC--CCCChhHHHHhcCCCcEEEEcCCCCCC--------
Q 037453 8 LWLVNRQKRTRHCFISSLLLGELSAMASLFKDQRKLSAYRDRR--FPGTQEEFEEALLASTTVYVGNMSFYT-------- 77 (216)
Q Consensus 8 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nLp~~~-------- 77 (216)
+|.+.-+++...|.+-+-+..+.......+.........+++. ...............++|||+|||..+
T Consensus 75 ffakG~C~~G~~C~y~H~lPt~~d~~~~~~~~~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~ 154 (240)
T 3u1l_A 75 FFAKGMCCLGPKCEYLHHIPDEEDIGKLALRTEVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPA 154 (240)
T ss_dssp HHHTTCCSCGGGCSSBBSCCCHHHHHHHHHHCSSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHH
T ss_pred ccccCCCCCCCCCCccCCCCCccchhhhcccccCcccccchhcccchhcccCcCccccCCceeecCCCChhhhccccccc
Confidence 4677889999999998765443333211111110000011110 011111112234578999999999998
Q ss_pred -CHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee------------CCeeEEEEeeCC
Q 037453 78 -TEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTIL------------DDRPIRVDFDWG 144 (216)
Q Consensus 78 -te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l------------~g~~l~V~~a~~ 144 (216)
++++|+++|++||+|.+|+++. ++|||||+|.+.++|+.|+++|+|..| .|+.|.|++|..
T Consensus 155 ~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 155 QIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp HHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred CcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 7999999999999999999985 579999999999999999999999999 899999999975
Q ss_pred CC
Q 037453 145 FQ 146 (216)
Q Consensus 145 ~~ 146 (216)
.+
T Consensus 229 ~p 230 (240)
T 3u1l_A 229 DP 230 (240)
T ss_dssp --
T ss_pred CC
Confidence 43
No 178
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=1.1e-17 Score=114.97 Aligned_cols=74 Identities=12% Similarity=0.202 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+++++++|+++|++| .|..+.+. +++|||||+|.+.++|++|++.|||..+.|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 56899999999999999999999999 99999884 478999999999999999999999999999999999985
Q ss_pred C
Q 037453 144 G 144 (216)
Q Consensus 144 ~ 144 (216)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 179
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.73 E-value=2e-17 Score=129.29 Aligned_cols=84 Identities=19% Similarity=0.321 Sum_probs=79.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+.+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 037453 143 WGFQ 146 (216)
Q Consensus 143 ~~~~ 146 (216)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 180
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=119.35 Aligned_cols=78 Identities=21% Similarity=0.228 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCC---CCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNS---KTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRV 139 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t---g~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V 139 (216)
...++|||+|||+++|+++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++||+.|+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3678999999999999999999999999999 888888877 7999999999999999999999884 367777766
Q ss_pred EeeC
Q 037453 140 DFDW 143 (216)
Q Consensus 140 ~~a~ 143 (216)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6543
No 181
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=116.75 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEE-EEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKI-IMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
..++|||+|||+.+++++|+++|++||.|..+ .++.++.++ .|||+|.+.++|++|+..|||..++|++|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56899999999999999999999999999999 588877654 3999999999999999999999999999999999
Q ss_pred CCC
Q 037453 143 WGF 145 (216)
Q Consensus 143 ~~~ 145 (216)
.+.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 764
No 182
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.72 E-value=2.4e-17 Score=126.54 Aligned_cols=77 Identities=26% Similarity=0.399 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+.+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..++|++|.|+++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 56899999999999999999999999988765 5678899999999999999999999999999999999999997
Q ss_pred CC
Q 037453 144 GF 145 (216)
Q Consensus 144 ~~ 145 (216)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 183
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=5.7e-17 Score=123.55 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=70.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC--eeEEEEee
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDD--RPIRVDFD 142 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g--~~l~V~~a 142 (216)
..+|||+||++.+|+++|+++|++||+|.+|.+..+ .++|||||+|.+.++|++|++.|||..|.| +.|+|+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 467999999999999999999999999999998653 257899999999999999999999999965 99999999
Q ss_pred CCCC
Q 037453 143 WGFQ 146 (216)
Q Consensus 143 ~~~~ 146 (216)
++..
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8653
No 184
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.71 E-value=3.5e-17 Score=112.92 Aligned_cols=75 Identities=17% Similarity=0.296 Sum_probs=63.0
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc--eeCCeeEEE
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGT--ILDDRPIRV 139 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~--~l~g~~l~V 139 (216)
..+..+|||+|||+++|+++|+++|++||.|.+|.++++ ++|||||+|.+.++|++ +++. .+.|++|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 346799999999999999999999999999999999874 78999999999999983 4554 456999999
Q ss_pred EeeCCC
Q 037453 140 DFDWGF 145 (216)
Q Consensus 140 ~~a~~~ 145 (216)
.++.++
T Consensus 79 ~~a~~k 84 (89)
T 3d2w_A 79 SNAEPK 84 (89)
T ss_dssp EECC--
T ss_pred EEcCCC
Confidence 998753
No 185
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=114.07 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFD 142 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a 142 (216)
...++|||+|||+++++++|+++|++||.|..|.++.+ ++|||||+|.+.++|++|+. ....+.|++|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35799999999999999999999999999999999764 78999999999999986533 135568999999998
Q ss_pred CCCCC
Q 037453 143 WGFQD 147 (216)
Q Consensus 143 ~~~~~ 147 (216)
.+...
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76443
No 186
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=9.9e-17 Score=117.91 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccE-EEEEecCHHHHHHHHHHhCCceeCC--eeEEEE
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGF-CFALFYSREDTEDAVKYISGTILDD--RPIRVD 140 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~-afV~F~~~~~a~~Al~~l~g~~l~g--~~l~V~ 140 (216)
.--.|||+||++.+|+++|+++|++||.|.+|.+..+ .+|| |||+|.+.++|++|++.|||..|.| +.|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3457889999999999999999999999999988763 3688 9999999999999999999999988 899999
Q ss_pred eeCCCC
Q 037453 141 FDWGFQ 146 (216)
Q Consensus 141 ~a~~~~ 146 (216)
+|++..
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 997643
No 187
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.7e-17 Score=111.09 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=64.9
Q ss_pred CCcE-EEEcCCCCCCCHHH----HHHHhhcc-CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 037453 64 ASTT-VYVGNMSFYTTEEQ----IYELFSRA-GEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPI 137 (216)
Q Consensus 64 ~~~~-l~V~nLp~~~te~~----l~~~F~~~-G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l 137 (216)
+..+ |||+|||+.+++++ |+++|++| |.|.+| ++ |+|||.|.+.++|.+|++.|||..+.|++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4455 99999999999988 55899999 599988 33 999999999999999999999999999999
Q ss_pred EEEeeCCCC
Q 037453 138 RVDFDWGFQ 146 (216)
Q Consensus 138 ~V~~a~~~~ 146 (216)
+|++|...+
T Consensus 77 ~v~~A~~~s 85 (96)
T 2diu_A 77 IVSFTPKNR 85 (96)
T ss_dssp EEESSCCSC
T ss_pred EEEecCCCc
Confidence 999997543
No 188
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.70 E-value=6.1e-17 Score=110.61 Aligned_cols=71 Identities=27% Similarity=0.534 Sum_probs=66.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCcee
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRA----G-------EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTIL 132 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l 132 (216)
+.++|||+|||+++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|++|+ .||+..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 56899999999999999999999999 8 8999998653 799999999999999999 8999999
Q ss_pred CCeeEEEEe
Q 037453 133 DDRPIRVDF 141 (216)
Q Consensus 133 ~g~~l~V~~ 141 (216)
.|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 189
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.69 E-value=2.8e-16 Score=111.70 Aligned_cols=81 Identities=19% Similarity=0.126 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHHhhccCCeeEEEEeecCCC-CCcccEEEEEecCHHHHHHHHHHhCCceeCCee
Q 037453 63 LASTTVYVGNMSF-----YTTEEQIYELFSRAGEIKKIIMGLDKNS-KTPCGFCFALFYSREDTEDAVKYISGTILDDRP 136 (216)
Q Consensus 63 ~~~~~l~V~nLp~-----~~te~~l~~~F~~~G~i~~v~i~~d~~t-g~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~ 136 (216)
.++++|+|.||.. +-++++|+++|++||.|.+|.|++++.+ ++++|||||+|.+.++|.+|+..|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999962 2378999999999999999999998764 688999999999999999999999999999999
Q ss_pred EEEEeeC
Q 037453 137 IRVDFDW 143 (216)
Q Consensus 137 l~V~~a~ 143 (216)
|.|.++.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999985
No 190
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=2e-16 Score=115.54 Aligned_cols=74 Identities=14% Similarity=0.243 Sum_probs=66.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccE-EEEEecCHHHHHHHHHHhCCceeCC--eeEEEEee
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGF-CFALFYSREDTEDAVKYISGTILDD--RPIRVDFD 142 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~-afV~F~~~~~a~~Al~~l~g~~l~g--~~l~V~~a 142 (216)
..|||+|||+.+|+++|+++|++||.|.+|.+.. + .|| |||+|.+.++|.+|++.|||..|.| +.|+|++|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 3568999999999999999999999999999865 2 286 9999999999999999999999987 68999999
Q ss_pred CCC
Q 037453 143 WGF 145 (216)
Q Consensus 143 ~~~ 145 (216)
++.
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 764
No 191
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.67 E-value=2.7e-16 Score=114.56 Aligned_cols=76 Identities=22% Similarity=0.293 Sum_probs=69.7
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDF 141 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~ 141 (216)
....++|||+|| ++|+++|+++|++||.|..|.+. .++|||||+|.+.++|++|+..||+..+.|+.|+|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999996 69999999999999999999985 4789999999999999999999999999999999999
Q ss_pred eCCC
Q 037453 142 DWGF 145 (216)
Q Consensus 142 a~~~ 145 (216)
+.+.
T Consensus 108 a~~~ 111 (121)
T 2bz2_A 108 ARKQ 111 (121)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 9754
No 192
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=3.6e-16 Score=122.90 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
..++|||+|||+++|+++|+++|++||.|..|+++++. ++.++|||||+|.+.++|++|+..+ +..++|++|.|.++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 46899999999999999999999999999999999986 4889999999999999999999855 469999999999876
Q ss_pred C
Q 037453 144 G 144 (216)
Q Consensus 144 ~ 144 (216)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=5.4e-15 Score=118.77 Aligned_cols=77 Identities=22% Similarity=0.229 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC-CeeEEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAG-EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD-DRPIRVD 140 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~-g~~l~V~ 140 (216)
.+.++|||+|||+.+++++|+++|++|| .|..+.++.+ .+|||||+|.+.++|.+|+..|||..+. |++|+|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999999653 4789999999999999999999999999 9999999
Q ss_pred eeCC
Q 037453 141 FDWG 144 (216)
Q Consensus 141 ~a~~ 144 (216)
++.+
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9864
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.61 E-value=4.6e-15 Score=121.49 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC-CceeC---CeeEEE
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYIS-GTILD---DRPIRV 139 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~-g~~l~---g~~l~V 139 (216)
+.++|||+|||+.+|+++|+++|+.||.|..|.++.| .+|.++|||||+|.+.++|.+|+..|| +..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4689999999999999999999999999999999999 689999999999999999999999995 44544 899999
Q ss_pred EeeCCCC
Q 037453 140 DFDWGFQ 146 (216)
Q Consensus 140 ~~a~~~~ 146 (216)
.++.+..
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9997643
No 195
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.6e-15 Score=104.73 Aligned_cols=79 Identities=22% Similarity=0.316 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCC-----------HHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCce
Q 037453 63 LASTTVYVGNMSFYTT-----------EEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTI 131 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~t-----------e~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~ 131 (216)
.++++|+|.||..... +++|+++|++||.|..|.| .|+ .++|||||+|.+.++|++|+..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3679999999944332 5899999999999999966 554 378999999999999999999999999
Q ss_pred eCCeeEEEEeeCCC
Q 037453 132 LDDRPIRVDFDWGF 145 (216)
Q Consensus 132 l~g~~l~V~~a~~~ 145 (216)
++|++|.|.++.+.
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999999754
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=2.2e-15 Score=119.44 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCe--eEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCe----e
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEI--KKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDR----P 136 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i--~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~----~ 136 (216)
.+.++|||+|||+++|+++|+++|++||.| ..+++..+. +..+|||||+|.+.++|.+||..|||..|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 456899999999999999999999999999 899998775 45679999999999999999999999999885 6
Q ss_pred EEEEee
Q 037453 137 IRVDFD 142 (216)
Q Consensus 137 l~V~~a 142 (216)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777765
No 197
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.59 E-value=5.6e-15 Score=121.82 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC-CeeEEEEe
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD-DRPIRVDF 141 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~-g~~l~V~~ 141 (216)
...++|||+|||..+++++|+++|++||.|..|+++.++ +|||||+|.+.++|.+|+..|||..+. |+.|+|.+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 457899999999999999999999999999999998653 589999999999999999999999999 99999999
Q ss_pred eC
Q 037453 142 DW 143 (216)
Q Consensus 142 a~ 143 (216)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 85
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.58 E-value=6.1e-15 Score=104.75 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=70.6
Q ss_pred CCcEEEEcCC--CCCCC--------HHHHHHHhhccCCeeEEEEeecCCC--CCcccEEEEEecCHHHHHHHHHHhCCce
Q 037453 64 ASTTVYVGNM--SFYTT--------EEQIYELFSRAGEIKKIIMGLDKNS--KTPCGFCFALFYSREDTEDAVKYISGTI 131 (216)
Q Consensus 64 ~~~~l~V~nL--p~~~t--------e~~l~~~F~~~G~i~~v~i~~d~~t--g~~~g~afV~F~~~~~a~~Al~~l~g~~ 131 (216)
+++.|.+.|+ |.+.. +++|++.|++||.|.+|.|++++.+ +.++|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5788999998 44443 3689999999999999999998765 3689999999999999999999999999
Q ss_pred eCCeeEEEEeeC
Q 037453 132 LDDRPIRVDFDW 143 (216)
Q Consensus 132 l~g~~l~V~~a~ 143 (216)
++|+.|.|.++.
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999999984
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.57 E-value=1e-15 Score=108.60 Aligned_cols=72 Identities=17% Similarity=0.331 Sum_probs=63.6
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 037453 70 VGNMSFYTTEEQIYELF------------SRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPI 137 (216)
Q Consensus 70 V~nLp~~~te~~l~~~F------------~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l 137 (216)
+.|||+.+++++|++.| ++||.|.+|.+++++. ++++|||||+|.+.++|.+|+..|||..++|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777777776666 9999999999998764 7899999999999999999999999999999999
Q ss_pred EEEee
Q 037453 138 RVDFD 142 (216)
Q Consensus 138 ~V~~a 142 (216)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 200
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=6.7e-15 Score=115.17 Aligned_cols=77 Identities=22% Similarity=0.229 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC-CeeEEEE
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAG-EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD-DRPIRVD 140 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~-g~~l~V~ 140 (216)
.+.++|||+|||+.+++++|+++|++|| .|..+.+..+ .+|+|||+|.+.++|.+|+..|||..++ |++|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3578999999999999999999999999 9999999764 3799999999999999999999999999 9999999
Q ss_pred eeCC
Q 037453 141 FDWG 144 (216)
Q Consensus 141 ~a~~ 144 (216)
++.+
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9864
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.54 E-value=2.5e-14 Score=103.67 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=71.0
Q ss_pred CCcEEEEcCCC--CCC---CHHHHHHHhhccCCeeEEEEeecCC----CCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 037453 64 ASTTVYVGNMS--FYT---TEEQIYELFSRAGEIKKIIMGLDKN----SKTPCGFCFALFYSREDTEDAVKYISGTILDD 134 (216)
Q Consensus 64 ~~~~l~V~nLp--~~~---te~~l~~~F~~~G~i~~v~i~~d~~----tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g 134 (216)
++++|++.|+- .++ -+++|++.|++||.|.+|.|++++. +++++|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 67899999993 222 3689999999999999999999865 46778999999999999999999999999999
Q ss_pred eeEEEEeeC
Q 037453 135 RPIRVDFDW 143 (216)
Q Consensus 135 ~~l~V~~a~ 143 (216)
+.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999984
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5.8e-14 Score=98.75 Aligned_cols=66 Identities=20% Similarity=0.303 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCCCC
Q 037453 75 FYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQD 147 (216)
Q Consensus 75 ~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~~~ 147 (216)
..+++++|+++|++||+|..|.|+ ++++|||||+|.+.++|++|+..+++ +.|++|+|+++.+...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 568999999999999999999987 35899999999999999999997544 6799999999876543
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.46 E-value=1.3e-13 Score=116.94 Aligned_cols=75 Identities=16% Similarity=0.309 Sum_probs=65.1
Q ss_pred CCCcEEEEcC--CCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC---Ce--
Q 037453 63 LASTTVYVGN--MSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD---DR-- 135 (216)
Q Consensus 63 ~~~~~l~V~n--Lp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~---g~-- 135 (216)
.+..+|||+| |++.+|+++|+++|++||+|.+|.+.. +||||||+|.+.++|++|++.|||..+. |+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 4678999999 578999999999999999999987753 5799999999999999999999998873 44
Q ss_pred eEEEEeeC
Q 037453 136 PIRVDFDW 143 (216)
Q Consensus 136 ~l~V~~a~ 143 (216)
.|.|.++.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 57777763
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=1.5e-12 Score=93.61 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=64.5
Q ss_pred CCcEEEEcCCC--CCC--------CHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 037453 64 ASTTVYVGNMS--FYT--------TEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD 133 (216)
Q Consensus 64 ~~~~l~V~nLp--~~~--------te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~ 133 (216)
+++.|.+.|+= .+. -+++|++.|++||.|.+|.+.++. ++|++||+|.+.++|.+|+..|||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 56778888872 221 135789999999999999997653 5899999999999999999999999999
Q ss_pred CeeEEEEeeC
Q 037453 134 DRPIRVDFDW 143 (216)
Q Consensus 134 g~~l~V~~a~ 143 (216)
|+.|.|.++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999984
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.1e-11 Score=89.65 Aligned_cols=77 Identities=19% Similarity=0.092 Sum_probs=69.0
Q ss_pred cCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecC-HHHHHHHHHHhC--CceeCCeeE
Q 037453 62 LLASTTVYVGNMSFY-TTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYS-REDTEDAVKYIS--GTILDDRPI 137 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~-~~~a~~Al~~l~--g~~l~g~~l 137 (216)
.+..+.|||+||++. +++++|+++|++||+|..|.+.++.. .|||.|.+ +++|..|+..+| +..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 457899999999999 99999999999999999999988754 59999999 899999999995 688999999
Q ss_pred EEEeeCC
Q 037453 138 RVDFDWG 144 (216)
Q Consensus 138 ~V~~a~~ 144 (216)
.++...+
T Consensus 89 ~~evL~G 95 (121)
T 1owx_A 89 TWEVLEG 95 (121)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 9988743
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.6e-11 Score=83.81 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=62.5
Q ss_pred CCCcEEEEcCCCC----CCCH----HHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 037453 63 LASTTVYVGNMSF----YTTE----EQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDD 134 (216)
Q Consensus 63 ~~~~~l~V~nLp~----~~te----~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g 134 (216)
++..+|+|.-+|. .+-. .+|.+.|++||+|..++++.|+ +||+|.+.++|.+|++ |||..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4668888887762 3333 5788999999999999998863 8999999999999999 99999999
Q ss_pred eeEEEEeeCC
Q 037453 135 RPIRVDFDWG 144 (216)
Q Consensus 135 ~~l~V~~a~~ 144 (216)
+.|+|+++.+
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999999864
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=2.1e-10 Score=78.62 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=62.1
Q ss_pred CCCcEEEEcCCCCC-----C-CH---HHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 037453 63 LASTTVYVGNMSFY-----T-TE---EQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILD 133 (216)
Q Consensus 63 ~~~~~l~V~nLp~~-----~-te---~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~ 133 (216)
++..||+|.-++.. + .+ .+|.+.|++||+|..++++.|+ +||+|.+.++|.+||+ |||..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 46789999888743 2 32 4688999999999999998863 9999999999999999 9999999
Q ss_pred CeeEEEEeeC
Q 037453 134 DRPIRVDFDW 143 (216)
Q Consensus 134 g~~l~V~~a~ 143 (216)
|+.|+|++..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999999754
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.06 E-value=4.3e-10 Score=89.53 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=60.3
Q ss_pred CCHHHHHHHhhccCCeeEEEEeecC----CCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeC
Q 037453 77 TTEEQIYELFSRAGEIKKIIMGLDK----NSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDW 143 (216)
Q Consensus 77 ~te~~l~~~F~~~G~i~~v~i~~d~----~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~ 143 (216)
-.+++|++.|++||.|.++.++++. .++.++|++||+|.+.++|.+|+..|||..++||.|.|.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3467899999999999999998554 455899999999999999999999999999999999999974
No 209
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.79 E-value=2e-09 Score=80.47 Aligned_cols=104 Identities=13% Similarity=-0.046 Sum_probs=67.4
Q ss_pred CCCcccEEEEEecCHHHHHHHHHHh-CCceeCCeeEEEEeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCC
Q 037453 103 SKTPCGFCFALFYSREDTEDAVKYI-SGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFM 181 (216)
Q Consensus 103 tg~~~g~afV~F~~~~~a~~Al~~l-~g~~l~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 181 (216)
....+|+++|+|.+.++|++|++.+ ||..++| .+.+.++.............. .............+.|.|||..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~V~nl~~~- 84 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHH--HHMHRDSCPLDCKVYVGNLGNN- 84 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCC--CCSCSSSSTTSCEEEEESCCSC-
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccccc--ccccccCCCCCCEEEEeCCCCC-
Confidence 3467899999999999999999999 9999999 999998764221111000000 0000111111122445555443
Q ss_pred CchhccccchhhHHHhhhcCCCCccccccc-cccCC
Q 037453 182 CWSDVVNISFHRTEAFNSFGGGDAYKSVNH-LICGW 216 (216)
Q Consensus 182 s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~-~~~~~ 216 (216)
.++ ++|+++|++||.+.....+.+ .++||
T Consensus 85 -----~t~-~~l~~~F~~~G~i~~v~i~~~~~g~af 114 (150)
T 2i2y_A 85 -----GNK-TELERAFGYYGPLRSVWVARNPPGFAF 114 (150)
T ss_dssp -----CSC-HHHHHHHHHHSCEEEEEECSSSCSEEE
T ss_pred -----CCH-HHHHHHHHhhCCEEEEEEeeCCCcEEE
Confidence 777 899999999999988777655 44443
No 210
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.70 E-value=1.8e-08 Score=75.80 Aligned_cols=104 Identities=10% Similarity=-0.088 Sum_probs=60.3
Q ss_pred EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 037453 94 KIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDIL 173 (216)
Q Consensus 94 ~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (216)
.+.++++.. +++|||||+|.+.++|++|+..+++....+..+.+..+........... .............+.
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~ 74 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSH-----HHHHHMDVEGMTSLK 74 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCC-----CSSCCCCCCBCCEEE
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccccc-----ccccccCCCCCCEEE
Confidence 456666654 5899999999999999999998886433333333322111000000000 000000011112245
Q ss_pred cccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 174 LLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 174 v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
|.|||.. .++ ++|+++|++||.+.....+.+
T Consensus 75 v~nl~~~------~~~-~~l~~~F~~~G~v~~~~i~~~ 105 (158)
T 2kn4_A 75 VDNLTYR------TSP-DTLRRVFEKYGRVGDVYIPRD 105 (158)
T ss_dssp EESCCTT------CCH-HHHHHHHHHHSCEEEEECCCC
T ss_pred EeCCCCC------CCH-HHHHHHHHhcCCeEEEEEeec
Confidence 5555554 777 899999999999888777654
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.5e-07 Score=65.88 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=66.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc-----CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRA-----GEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIR 138 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~-----G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 138 (216)
..++|-+-|||..+++..|+.+.+++ |.|+.+.+..|. +-|+|+|.+...|-+|.-+|+|..+.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46889999999999999999999999 999999998764 6899999999999999999999999999999
Q ss_pred EEe
Q 037453 139 VDF 141 (216)
Q Consensus 139 V~~ 141 (216)
+--
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 863
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=7e-05 Score=52.01 Aligned_cols=75 Identities=11% Similarity=-0.023 Sum_probs=63.0
Q ss_pred CCcEEEEcCCCCCC-C----HHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 037453 64 ASTTVYVGNMSFYT-T----EEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIR 138 (216)
Q Consensus 64 ~~~~l~V~nLp~~~-t----e~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 138 (216)
-.++|+|.||+.++ . .+.++++|..|+++......+ +-.-..|.|.++++|.+|-..|++..+.|++++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk------SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK------SFKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET------TTTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC------cceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 46889999998865 2 256789999999988877665 333568999999999999999999999999999
Q ss_pred EEeeCC
Q 037453 139 VDFDWG 144 (216)
Q Consensus 139 V~~a~~ 144 (216)
|-++.+
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999863
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.74 E-value=0.00026 Score=48.13 Aligned_cols=69 Identities=17% Similarity=0.094 Sum_probs=55.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCC--cccEEEEEecCHHHHHHHHHHhCCceeCC
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKT--PCGFCFALFYSREDTEDAVKYISGTILDD 134 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~--~~g~afV~F~~~~~a~~Al~~l~g~~l~g 134 (216)
++|.|++||+.+||+++.+.+.....+.....+..+.+.+ .-.-|||.|.+.+++..-.+.++|..+-+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5788999999999999999999888776666554433322 23569999999999999999999987743
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=0.00046 Score=47.73 Aligned_cols=72 Identities=13% Similarity=0.014 Sum_probs=59.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhc-----cCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSR-----AGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIR 138 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~-----~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~ 138 (216)
...+|.|.|||+.++++.|+-+|+. -|+|..+.... +-|+|+|.+.+.|++.|+ -..+.|.+.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 4689999999999999999999976 25777776532 578999999999999998 446899999999
Q ss_pred EEeeCC
Q 037453 139 VDFDWG 144 (216)
Q Consensus 139 V~~a~~ 144 (216)
|....+
T Consensus 78 V~P~~~ 83 (104)
T 2dhx_A 78 LRPAPP 83 (104)
T ss_dssp EEECCC
T ss_pred EEcCCC
Confidence 987643
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.60 E-value=0.00019 Score=49.10 Aligned_cols=56 Identities=21% Similarity=0.181 Sum_probs=47.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYIS 128 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~ 128 (216)
..+.++| +.|+.+...||.++|++||. ..|.++-| --|||.|.+++.|..|+..++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3467777 99999999999999999995 45777766 389999999999999999763
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.46 E-value=0.00022 Score=48.92 Aligned_cols=54 Identities=22% Similarity=0.162 Sum_probs=46.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYIS 128 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~ 128 (216)
+.++| +.|+.+...||.++|++|| -..|.++-| --|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 45667 9999999999999999999 456778776 389999999999999999765
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.20 E-value=0.0019 Score=45.97 Aligned_cols=71 Identities=21% Similarity=0.195 Sum_probs=58.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCC-eeEEEEee
Q 037453 64 ASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDD-RPIRVDFD 142 (216)
Q Consensus 64 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g-~~l~V~~a 142 (216)
..+-|.|-+.|+.. ...|...|++||+|.+.... ....+-.|.|.++.+|++||. .||..++| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 46788898999885 57788899999999988762 134689999999999999999 79999985 67777774
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.96 E-value=0.0018 Score=44.37 Aligned_cols=78 Identities=19% Similarity=0.087 Sum_probs=53.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCC--cccEEEEEecCHHHHHHHHHHhCCceeCC-----eeE
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKT--PCGFCFALFYSREDTEDAVKYISGTILDD-----RPI 137 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~--~~g~afV~F~~~~~a~~Al~~l~g~~l~g-----~~l 137 (216)
+-+|.|+.||+.+||+++.+.++..=++.....+....+.+ .-.-|||.|.+.++...-.+..+|..+-+ .+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 45788999999999999888877654432222221111111 22468999999999999999999977643 244
Q ss_pred EEEee
Q 037453 138 RVDFD 142 (216)
Q Consensus 138 ~V~~a 142 (216)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56655
No 219
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.93 E-value=0.00068 Score=49.32 Aligned_cols=77 Identities=6% Similarity=-0.056 Sum_probs=27.7
Q ss_pred EEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCchhccc
Q 037453 109 FCFALFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLLTLLNFMCWSDVVN 188 (216)
Q Consensus 109 ~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~ 188 (216)
++|++|.+...+..|+..++|....|+. .+.+.. + .........+.|.|||.. .+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~---------------~---~~~~~~~~~l~V~nLp~~------~t 60 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGR---------------P---PPDVEGMTSLKVDNLTYR------TS 60 (135)
T ss_dssp ------------------------------CCSCC---------------S---CSSGGGCCCEEEECCCSS------CH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCC---------------C---CCCCCCCCEEEEeCCCCC------CC
Confidence 5788888888888999888876555432 001000 0 001111122555666554 77
Q ss_pred cchhhHHHhhhcCCCCccccccc
Q 037453 189 ISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 189 ~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+ ++|+++|++||.+..+..+.+
T Consensus 61 e-~~L~~~F~~~G~i~~v~i~~~ 82 (135)
T 2lea_A 61 P-DTLRRVFEKYGRVGDVYIPRD 82 (135)
T ss_dssp H-HHHHHHHGGGSCCSEEECCCC
T ss_pred H-HHHHHHHHhcCCEEEEEEEec
Confidence 7 899999999999988877654
No 220
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=96.89 E-value=6.7e-05 Score=65.49 Aligned_cols=33 Identities=9% Similarity=0.047 Sum_probs=25.5
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.||+.. +++ ++|.++|++||.+..+.++.+
T Consensus 105 lfV~nL~~~------~te-~~L~~~F~~~G~I~~v~i~~d 137 (437)
T 3pgw_S 105 LFVARVNYD------TTE-SKLRREFEVYGPIKRIHMVYS 137 (437)
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHcCCeeEEEeecc
Confidence 455555544 777 899999999999998888754
No 221
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=96.81 E-value=0.00038 Score=52.36 Aligned_cols=92 Identities=11% Similarity=0.002 Sum_probs=25.8
Q ss_pred EEecCHHHHHHHHHHhCCceeC--CeeEEEEeeCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCcccccCCCCCCchhc
Q 037453 112 ALFYSREDTEDAVKYISGTILD--DRPIRVDFDWGFQDGRQWGRG---RSGGQVRDEYRTDYDPDILLLTLLNFMCWSDV 186 (216)
Q Consensus 112 V~F~~~~~a~~Al~~l~g~~l~--g~~l~V~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 186 (216)
.+|++.++|+.|+..+++.... |+.+.+..+..... ..+... ...+.............+.|.|||..
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~------ 83 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAI-HSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEE------ 83 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTT------
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccc-cCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCC------
Confidence 7899999999999999986554 55555554321110 000000 00000001111111122455555543
Q ss_pred cccchhhHHHhhhcCCCCccccccc
Q 037453 187 VNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
.++ ++|+++|++||.+..+..+.+
T Consensus 84 ~t~-~~L~~~F~~~G~i~~v~i~~~ 107 (165)
T 1rk8_A 84 AQE-DEIQEKFCDYGEIKNIHLNLD 107 (165)
T ss_dssp CCH-HHHHHHHGGGSCEEEEEEEEC
T ss_pred CCH-HHHHHHhhcCCCEEEEEEEec
Confidence 777 899999999999888777654
No 222
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.37 E-value=0.0014 Score=57.45 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=43.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 037453 63 LASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVK 125 (216)
Q Consensus 63 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~ 125 (216)
...++|+|. .|..+++.+|.++|++||.|.++.+-.++ .-||.|+|.+.+++.+++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 356899997 79999999999999999999999886532 2699999999999997765
No 223
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.28 E-value=0.0016 Score=46.43 Aligned_cols=29 Identities=10% Similarity=-0.130 Sum_probs=25.4
Q ss_pred cccchhhHHHhhhcCCCCccccccccccCC
Q 037453 187 VNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
.++ ++|+++|++||.+..+..+...++||
T Consensus 43 vte-~dL~~lF~~fG~V~~v~i~~~kG~AF 71 (119)
T 2ad9_A 43 VTE-GEVISLGLPFGKVTNLLMLKGKNQAF 71 (119)
T ss_dssp CCH-HHHHHHHTTTSCCCEEEEEGGGTEEE
T ss_pred CCH-HHHHHHHHhcCCEEEEEEeCCCCEEE
Confidence 778 89999999999999998887777765
No 224
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.22 E-value=0.0016 Score=44.99 Aligned_cols=30 Identities=10% Similarity=-0.124 Sum_probs=24.7
Q ss_pred ccccchhhHHHhhhcCCCCccccccccccCC
Q 037453 186 VVNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 186 ~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
..++ ++|+++|++||.+..+..+...++||
T Consensus 26 ~~te-~~L~~~F~~fG~v~~v~i~~~kg~aF 55 (101)
T 2cq1_A 26 EVTE-TEVIALGLPFGKVTNILMLKGKNQAF 55 (101)
T ss_dssp TCCH-HHHHHTTTTTSCEEEEEEETTTTEEE
T ss_pred CCCH-HHHHHHHHhcCCEEEEEEECCCCEEE
Confidence 3777 89999999999998887777666664
No 225
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.13 E-value=0.0098 Score=42.89 Aligned_cols=77 Identities=12% Similarity=0.078 Sum_probs=54.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEeecC--------CCC-----CcccEEEEEecCHHHHHHHHHHhCCc
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKK-IIMGLDK--------NSK-----TPCGFCFALFYSREDTEDAVKYISGT 130 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~i~~d~--------~tg-----~~~g~afV~F~~~~~a~~Al~~l~g~ 130 (216)
...|.|-+.|++.+ ..+.+.|++||.|.+ ....++. .+. .....-.|+|.++.+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45677778877655 557778999999865 2111100 000 134678999999999999999 8999
Q ss_pred eeCCeeEEEEeeC
Q 037453 131 ILDDRPIRVDFDW 143 (216)
Q Consensus 131 ~l~g~~l~V~~a~ 143 (216)
.++|..|-|....
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988888764
No 226
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.12 E-value=0.0018 Score=44.91 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=24.8
Q ss_pred cccchhhHHHhhhcCCCCccccccccccCC
Q 037453 187 VNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
.++ ++|+++|++||.+..+..+....+||
T Consensus 28 ~te-~dL~~lF~~fG~V~~v~i~~~kg~aF 56 (102)
T 1x4d_A 28 NLR-YQLLQLVEPFGVISNHLILNKINEAF 56 (102)
T ss_dssp SHH-HHHHTTTGGGSCEEEEEECSSSSCEE
T ss_pred CCH-HHHHHHHHhcCCEEEEEEEcCCCEEE
Confidence 777 89999999999999988887776664
No 227
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.03 E-value=0.0024 Score=44.28 Aligned_cols=38 Identities=16% Similarity=-0.033 Sum_probs=28.7
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccccccCC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+...++||
T Consensus 18 l~V~nLp~~------~te-~~L~~~F~~fG~V~~v~i~~~kg~aF 55 (104)
T 1wex_A 18 VHVRGLCES------VVE-ADLVEALEKFGTICYVMMMPFKRQAL 55 (104)
T ss_dssp EEEESCCSS------CCH-HHHHHHHTTTSCEEEEEEETTTTEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhCCCEEEEEEECCCCEEE
Confidence 445555443 777 89999999999999888777666664
No 228
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.76 E-value=0.0024 Score=44.54 Aligned_cols=38 Identities=13% Similarity=-0.123 Sum_probs=29.8
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccccccCC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+...++||
T Consensus 19 LfV~nLp~~------vte-~dL~~lF~~fG~V~~v~i~~~kGfaF 56 (105)
T 1sjq_A 19 IHIRKLPID------VTE-GEVISLGLPFGKVTNLLMLKGKNQAF 56 (105)
T ss_dssp EEECSCCTT------SCH-HHHHHHHHHHCCEEEEEEETTTTEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCEEEEEEEcCCCEEE
Confidence 445555443 788 89999999999999998887777775
No 229
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.71 E-value=0.0079 Score=42.35 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=32.5
Q ss_pred CCCCCcccccCCCCCCchhc-cccchhhHHHhhhcCCCCccccccccccCC
Q 037453 167 DYDPDILLLTLLNFMCWSDV-VNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 167 ~~~~~~~v~~~~~~~s~~~~-~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
...++..++ |.|+ +.. .++ ++|+++|++||.+..+..+...++||
T Consensus 21 ~~~p~~~l~-V~NL---p~~~~te-~~L~~lF~~fG~V~~v~i~~~kg~aF 66 (112)
T 1x4f_A 21 KQELGRVIH-LSNL---PHSGYSD-SAVLKLAEPYGKIKNYILMRMKSQAF 66 (112)
T ss_dssp SSCCCCEEE-EESC---CCSSCCS-HHHHTTTTTTSCCSEEEEETTTTEEE
T ss_pred cCCCCCEEE-EeCC---CCccCCH-HHHHHHHHhcCCEEEEEEecCCCEEE
Confidence 344455555 6665 333 667 88999999999999988877666665
No 230
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.57 E-value=0.0063 Score=41.25 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=28.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccccccCC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
+.|.|||.. .++ ++|+++|++||.+..+.......+||
T Consensus 18 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~v~~~~~kg~af 55 (99)
T 2cpj_A 18 LFVGNLPPD------ITE-EEMRKLFEKYGKAGEVFIHKDKGFGF 55 (99)
T ss_dssp EEEESCCTT------CCH-HHHHHHTSTTCCCSEEEEETTTTEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHhhcCCeEEEEEecCCCEEE
Confidence 445555543 777 89999999999998888777666554
No 231
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.39 E-value=0.0088 Score=39.13 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=28.9
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccccccCC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
+.|.|||.. .++ ++|+++|++||.+.....+...++||
T Consensus 15 l~V~~l~~~------~t~-~~l~~~f~~~G~i~~~~~~~~kg~af 52 (85)
T 2ytc_A 15 LYVGGLGDT------ITE-TDLRNHFYQFGEIRTITVVQRQQCAF 52 (85)
T ss_dssp EEEECCTTT------SCH-HHHHHHHHTTSCEEEEEEEGGGTEEE
T ss_pred EEEcCCCCC------CCH-HHHHHHHHhCCCEeEEEEECCCCEEE
Confidence 555555554 777 89999999999998888777666654
No 232
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=95.27 E-value=0.0047 Score=42.65 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=28.8
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccccccCC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
+.|.|||.. .++ ++|+++|++||.+.....+...++||
T Consensus 24 l~V~NLp~~------~te-~~L~~lF~~fG~V~~v~i~~~kg~AF 61 (100)
T 3r27_A 24 VHIRGLIDG------VVE-ADLVEALQEFGPISYVVVMPKKRQAL 61 (100)
T ss_dssp EEEESCCTT------CCH-HHHHHHHGGGSCEEEEEEETTTTEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHhccCCEEEEEEEcCCCEEE
Confidence 444455543 777 89999999999998888777666664
No 233
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.18 E-value=0.011 Score=39.77 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=28.0
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccccccCC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
+.|.|||.. .++ ++|+++|++||.+..+.......++|
T Consensus 20 l~V~nlp~~------~t~-~~l~~~F~~~G~v~~v~~~~~~g~af 57 (97)
T 1why_A 20 LWVGGLGPN------TSL-AALAREFDRFGSIRTIDHVKGDSFAY 57 (97)
T ss_dssp EEEECCCSS------CCH-HHHHHHHHTTSCEEEEEECSSSCCEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeeEEEEeCCCCEEE
Confidence 555555554 777 89999999999998887776655543
No 234
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.02 E-value=0.023 Score=37.77 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=25.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 19 l~V~nlp~~------~t~-~~l~~~f~~~G~v~~v~i~~~ 51 (94)
T 2e5h_A 19 VYVSNLPFS------LTN-NDLYRIFSKYGKVVKVTIMKD 51 (94)
T ss_dssp EEEESCCTT------SCH-HHHHHHTTTTSCEEEEEECCC
T ss_pred EEEECCCCC------CCH-HHHHHHHHhcCCeEEEEEEeC
Confidence 566666654 777 889999999999888777654
No 235
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.85 E-value=0.016 Score=39.96 Aligned_cols=33 Identities=6% Similarity=-0.102 Sum_probs=24.7
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|.+||.+....++.+
T Consensus 18 l~V~nLp~~------~t~-~~l~~~F~~~G~i~~~~i~~~ 50 (108)
T 1x4c_A 18 VVVSGLPPS------GSW-QDLKDHMREAGDVCYADVYRD 50 (108)
T ss_dssp EEEESCCSS------CCH-HHHHHHHGGGSCEEEEEEETT
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCEeEEEEecC
Confidence 556666554 777 899999999999877666544
No 236
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=94.66 E-value=0.016 Score=39.57 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=25.1
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 18 l~v~nLp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 50 (105)
T 2dnh_A 18 LFVGMLNKQ------QSE-EDVLRLFQPFGVIDECTVLRG 50 (105)
T ss_dssp EEEESCCTT------CCH-HHHHHHHTTTSCEEEEEEEEC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEEEC
Confidence 555555554 777 899999999999888776654
No 237
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.61 E-value=0.012 Score=40.15 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=24.7
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.
T Consensus 18 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~ 49 (103)
T 2d9p_A 18 LYVKNLDDG------IDD-ERLRKAFSPFGTITSAKVMM 49 (103)
T ss_dssp EEEECCCTT------CCH-HHHHHTTTTTSCEEEEEEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCEEEEEEEc
Confidence 555555554 777 89999999999988877663
No 238
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.60 E-value=0.017 Score=39.30 Aligned_cols=33 Identities=9% Similarity=-0.019 Sum_probs=24.6
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+.++.+
T Consensus 18 l~V~nlp~~------~t~-~~l~~~f~~~G~v~~v~i~~~ 50 (103)
T 2cq3_A 18 LHVSNIPFR------FRD-PDLRQMFGQFGKILDVEIIFN 50 (103)
T ss_dssp EEEESCCTT------CCH-HHHHHHGGGTSCEEEEEEECC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEEec
Confidence 455555544 777 899999999999887766543
No 239
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.54 E-value=0.03 Score=38.13 Aligned_cols=25 Identities=8% Similarity=0.007 Sum_probs=20.4
Q ss_pred ccccchhhHHHhhhcCCCCccccccc
Q 037453 186 VVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 186 ~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
..++ ++|+++|++||.+..+..+.+
T Consensus 27 ~~t~-~~l~~~F~~~G~v~~v~i~~~ 51 (105)
T 2dh8_A 27 STTQ-ETLRSYFSQYGEVVDCVIMKD 51 (105)
T ss_dssp TCCH-HHHHHHHHTTSCEEEEEEEEC
T ss_pred CCCH-HHHHHHHHhcCCeEEEEEeeC
Confidence 3777 899999999999887766554
No 240
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.50 E-value=0.028 Score=38.36 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=25.5
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 18 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 50 (107)
T 2cph_A 18 ILVRNIPFQ------ANQ-REIRELFSTFGELKTVRLPKK 50 (107)
T ss_dssp EEEESCCTT------CCH-HHHHHHHHTTSCEEEEECCCC
T ss_pred EEEeCCCCc------CCH-HHHHHHHHccCCeEEEEEecC
Confidence 555555554 777 899999999999888777655
No 241
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=94.43 E-value=0.015 Score=39.18 Aligned_cols=38 Identities=11% Similarity=-0.053 Sum_probs=30.0
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccccccCC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
+.|.||+.. .++ ++|+++|.+||.+.++...-+.+.||
T Consensus 10 L~VgNL~~~------~te-~~L~~lF~q~G~V~~~~l~~~kGfaF 47 (89)
T 2wbr_A 10 LLLKNLTAQ------IDG-PTLRTLCMQHGPLVSFHPYLNQGIAL 47 (89)
T ss_dssp EEEECCCTT------CCC-HHHHHHHHHHSCEEEEEEETTTTEEE
T ss_pred EEEeCCCcc------CCH-HHHHHHHHhhCCEEEEEEcCCCcEEE
Confidence 455555554 888 99999999999999998877776654
No 242
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.36 E-value=0.045 Score=37.55 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=24.0
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+.....
T Consensus 25 l~V~nLp~~------~t~-~~l~~~F~~~G~v~~~~i~~~ 57 (109)
T 1x4a_A 25 IYVGNLPPD------IRT-KDIEDVFYKYGAIRDIDLKNR 57 (109)
T ss_dssp EEEESCCTT------CCH-HHHHHHHGGGSCEEEEEECCS
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEEEC
Confidence 455555543 777 899999999999877665543
No 243
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.26 E-value=0.018 Score=40.64 Aligned_cols=32 Identities=13% Similarity=-0.024 Sum_probs=25.3
Q ss_pred hhccccchhhHHHhhhcCCCCccccccccccCC
Q 037453 184 SDVVNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 184 ~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
....++ ++|+++|++||.+.....+.+.++||
T Consensus 36 ~~~~te-~~L~~~F~~fG~v~~v~i~~~rgfaF 67 (114)
T 2cq2_A 36 GNGVSR-NQLLPVLEKCGLVDALLMPPNKPYSF 67 (114)
T ss_dssp GGTCCH-HHHHHHHHHHSCEEEEECCTTCSCEE
T ss_pred CCCCCH-HHHHHHHHhcCCeEEEEEeCCCCEEE
Confidence 334777 89999999999998887776666664
No 244
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.06 E-value=0.053 Score=37.63 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=26.0
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHL 212 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~ 212 (216)
+.|.|||.. .++ ++|+++|++||.+..+.++.+.
T Consensus 20 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~~~ 53 (116)
T 2cqd_A 20 IFVGGLPYH------TTD-ASLRKYFEGFGDIEEAVVITDR 53 (116)
T ss_dssp EEEECCCSS------CCH-HHHHHHHHTTSCEEEEEESCCS
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhCCCeeEEEEEEcC
Confidence 555555554 777 8999999999999887776653
No 245
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.03 E-value=0.039 Score=37.87 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=25.1
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+....++.+
T Consensus 18 l~V~nLp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 50 (111)
T 1x4h_A 18 VFIRNLSFD------SEE-EALGEVLQQFGDLKYVRVVLH 50 (111)
T ss_dssp EEEESCCTT------CCH-HHHHHHHHTTSCEEEEECCBC
T ss_pred EEEECCCCC------CCH-HHHHHHHHhcCCeEEEEEEec
Confidence 455555554 777 899999999999888777644
No 246
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=94.00 E-value=0.017 Score=40.47 Aligned_cols=33 Identities=6% Similarity=-0.102 Sum_probs=25.3
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|.+||.+....++.+
T Consensus 19 l~V~nLp~~------~t~-~~l~~~F~~~G~v~~~~i~~~ 51 (115)
T 3beg_B 19 VVVSGLPPS------GSW-QDLKDHMREAGDVCYADVYRD 51 (115)
T ss_dssp EEEEECCSS------CCT-THHHHHHGGGSCEEEEEECTT
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEecC
Confidence 666666654 677 889999999999877766554
No 247
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=93.96 E-value=0.014 Score=40.03 Aligned_cols=32 Identities=22% Similarity=0.059 Sum_probs=23.8
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.
T Consensus 32 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~ 63 (107)
T 3ulh_A 32 LLVSNLDFG------VSD-ADIQELFAEFGTLKKAAVHY 63 (107)
T ss_dssp EEEESCCTT------CCH-HHHHHHHHTTSCEEEEEEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEEE
Confidence 455555443 777 89999999999988776663
No 248
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.96 E-value=0.06 Score=36.09 Aligned_cols=30 Identities=10% Similarity=0.095 Sum_probs=21.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSV 209 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~ 209 (216)
+.|.|||.. .++ ++|+++|++||.+. ...+
T Consensus 22 l~V~nL~~~------~t~-~~l~~~F~~~G~v~-~~~~ 51 (97)
T 2e5j_A 22 VYVGNLPRD------ARV-SDLKRALRELGSVP-LRLT 51 (97)
T ss_dssp EEEECCCTT------CCH-HHHHHHHHHTTCCC-SEEE
T ss_pred EEEeCCCCc------CcH-HHHHHHHHhcCCEE-EEEE
Confidence 455555543 777 89999999999985 3443
No 249
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.93 E-value=0.033 Score=38.51 Aligned_cols=33 Identities=15% Similarity=0.030 Sum_probs=24.6
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.||+.. .++ ++|+++|.+||.+..+.++.+
T Consensus 18 l~V~nlp~~------~~~-~~l~~~f~~~G~i~~~~i~~~ 50 (114)
T 2do0_A 18 VFVANLDYK------VGW-KKLKEVFSMAGVVVRADILED 50 (114)
T ss_dssp EEEESCCTT------CCH-HHHHHHHTTTSCEEEEEEEEC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEEEC
Confidence 555555554 777 899999999999877666543
No 250
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.84 E-value=0.026 Score=38.37 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=23.9
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.
T Consensus 18 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~ 49 (103)
T 2cqi_A 18 LYVGNLSRD------VTE-VLILQLFSQIGPCKSCKMIT 49 (103)
T ss_dssp EEEESCCTT------CCH-HHHHHHHHHHSCEEEEEEEC
T ss_pred EEEeCCCcc------CCH-HHHHHHHHhcCCEeEEEEEe
Confidence 455555543 777 89999999999988776655
No 251
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.82 E-value=0.043 Score=37.31 Aligned_cols=34 Identities=15% Similarity=-0.149 Sum_probs=25.2
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHL 212 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~ 212 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+.
T Consensus 18 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~~~ 51 (105)
T 1x5u_A 18 VYVGGLDEK------VSE-PLLWELFLQAGPVVNTHMPKDR 51 (105)
T ss_dssp EEEECCCTT------CCH-HHHHHHHHTTSCEEEEECCBCS
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEEecC
Confidence 455555543 777 8999999999998887766543
No 252
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.82 E-value=0.031 Score=37.19 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=24.0
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++||.+.....+.
T Consensus 18 l~v~nlp~~------~t~-~~l~~~f~~~G~v~~v~i~~ 49 (95)
T 2cqc_A 18 LGVFGLSLY------TTE-RDLREVFSKYGPIADVSIVY 49 (95)
T ss_dssp EEEESCCSS------CCH-HHHHHHHHTTSCEEEEEEEE
T ss_pred EEEECCCCC------CCH-HHHHHHHHhcCCeeEEEEEE
Confidence 455555554 777 89999999999988776653
No 253
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=93.77 E-value=0.034 Score=40.56 Aligned_cols=31 Identities=6% Similarity=-0.150 Sum_probs=22.1
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++|| +..+.++.
T Consensus 49 lfV~nLp~~------~te-~dL~~~F~~~G-i~~v~i~~ 79 (139)
T 2hgn_A 49 VHMRGLPYK------ATE-NDIYNFFSPLN-PVRVHIEI 79 (139)
T ss_dssp EECCSCCTT------CCH-HHHHHHHCSCC-CSEEECCC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcC-CeEEEEEE
Confidence 455555544 777 89999999999 65666654
No 254
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=93.72 E-value=0.052 Score=36.91 Aligned_cols=33 Identities=9% Similarity=0.112 Sum_probs=25.3
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 16 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 48 (106)
T 2dgp_A 16 LFIGQIPRN------LDE-KDLKPLFEEFGKIYELTVLKD 48 (106)
T ss_dssp EEEESCCTT------CCH-HHHHHHHHHHSCCCEEECCCC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeeEEEEEec
Confidence 455555543 778 899999999999988877664
No 255
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.68 E-value=0.052 Score=36.79 Aligned_cols=33 Identities=9% Similarity=-0.019 Sum_probs=25.0
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+.++.+
T Consensus 16 l~V~nLp~~------~t~-~~l~~~f~~~G~i~~v~i~~~ 48 (103)
T 2dnm_A 16 LKVDNLTYR------TSP-DSLRRVFEKYGRVGDVYIPRE 48 (103)
T ss_dssp EEEESCCTT------CCH-HHHHHHHTTTSCEEEEECCBC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCEEEEEEEeC
Confidence 455555554 777 899999999999888777654
No 256
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=93.63 E-value=0.027 Score=38.14 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=28.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccccccCC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
+.|.||+.. .++ ++|+++|++||.+..++.....++||
T Consensus 30 l~V~nlp~~------~~~-~~l~~~f~~~G~i~~~~~~~~~g~af 67 (101)
T 2la4_A 30 AYIGNIPHF------ATE-ADLIPLFQNFGFILDFKHYPEKGCCF 67 (101)
T ss_dssp EEEESCCTT------CCH-HHHHHHHHTTSCCSEEEEETTTTEEE
T ss_pred EEEcCCCcc------cCH-HHHHHHHHhCCCEEEEEEecCCCEEE
Confidence 445555443 777 89999999999999888776666654
No 257
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=93.57 E-value=0.042 Score=39.27 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=24.7
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 49 l~V~nLp~~------~te-~~L~~~F~~~G~I~~v~i~~d 81 (129)
T 2kxn_B 49 LGVFGLSLY------TTE-RDLREVFSKYGPIADVSIVYD 81 (129)
T ss_dssp BCEETCTTS------CCH-HHHHHHHTTTSCEEEEEEECC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEEec
Confidence 445555543 777 899999999999888777643
No 258
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.51 E-value=0.067 Score=36.21 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=25.3
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 18 l~v~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 50 (103)
T 2cqg_A 18 LIVLGLPWK------TTE-QDLKEYFSTFGEVLMVQVKKD 50 (103)
T ss_dssp EEEESCCSS------CCH-HHHHHHHGGGSCEEEEEEEEC
T ss_pred EEEEcCCCc------CCH-HHHHHHHHhcCCeEEEEEEec
Confidence 556666554 777 899999999999888776554
No 259
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=93.50 E-value=0.053 Score=37.77 Aligned_cols=79 Identities=11% Similarity=0.024 Sum_probs=20.6
Q ss_pred chhhhheee------eccccccceeeeecchhhHHHHHhhhhccc----ccchhhcCCCCCChhHHHHhcCCCcEEEEcC
Q 037453 3 ITKQYLWLV------NRQKRTRHCFISSLLLGELSAMASLFKDQR----KLSAYRDRRFPGTQEEFEEALLASTTVYVGN 72 (216)
Q Consensus 3 ~~~~~~~~~------~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n 72 (216)
++.+|+=|. ...+..+.||+++............+.... .......+.................+|||+|
T Consensus 25 ~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~N 104 (115)
T 4f25_A 25 TFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKN 104 (115)
T ss_dssp HHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC-------------------
T ss_pred HHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCCceEeCC
Confidence 566665443 222223567777766555544333322221 1111111111111222222334557899999
Q ss_pred CCCCCCHHH
Q 037453 73 MSFYTTEEQ 81 (216)
Q Consensus 73 Lp~~~te~~ 81 (216)
||+++|++.
T Consensus 105 l~~~~T~~a 113 (115)
T 4f25_A 105 FGPGSTRAA 113 (115)
T ss_dssp ---------
T ss_pred CCCCccccc
Confidence 999999864
No 260
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.46 E-value=0.022 Score=39.55 Aligned_cols=38 Identities=21% Similarity=0.042 Sum_probs=28.7
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccccccCC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+....+||
T Consensus 13 l~V~nLp~~------~te-~~L~~~F~~~G~i~~v~i~~~~g~af 50 (111)
T 1whx_A 13 ILAKNLPAG------TLA-AEIQETFSRFGSLGRVLLPEGGITAI 50 (111)
T ss_dssp EEEESCCTT------CCH-HHHHHHHHTTSCEEEEECCSSSSCEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCEEEEEEeCCCCEEE
Confidence 455555554 677 89999999999998888776666654
No 261
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=93.46 E-value=0.045 Score=36.48 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=26.0
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcC-CCCcccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFG-GGDAYKSVNHL 212 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG-~~~~~~~~~~~ 212 (216)
+.|.|||.. .++ ++|+++|++|| .+..++.+.+.
T Consensus 4 i~v~nLp~~------~te-~~l~~~F~~~G~~v~~v~i~~d~ 38 (91)
T 2lxi_A 4 VMLRMLPQA------ATE-DDIRGQLQSHGVQAREVRLMRNK 38 (91)
T ss_dssp EEEETCCSS------CCH-HHHHHHHHHHTCCCSBCCSSSCS
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHhCCEeEEEEEEecC
Confidence 455666665 888 99999999999 68887776543
No 262
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=93.43 E-value=0.092 Score=37.47 Aligned_cols=33 Identities=18% Similarity=0.037 Sum_probs=24.7
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+.....+.+
T Consensus 66 l~v~nlp~~------~~~-~~l~~~f~~~G~i~~v~i~~~ 98 (140)
T 2ku7_A 66 LYVGGLAEE------VDD-KVLHAAFIPFGDITDIQIPLD 98 (140)
T ss_dssp EEEECCCTT------CCH-HHHHHHHGGGSCEEEEECCCC
T ss_pred EEEEeCCCC------CCH-HHHHHHHHhcCCEEEEEEeec
Confidence 455555543 777 899999999999888776544
No 263
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.42 E-value=0.099 Score=35.20 Aligned_cols=33 Identities=18% Similarity=0.037 Sum_probs=25.5
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 15 l~V~nLp~~------~t~-~~l~~~f~~~G~i~~v~i~~~ 47 (102)
T 2cqb_A 15 LYVGGLAEE------VDD-KVLHAAFIPFGDITDIQIPLD 47 (102)
T ss_dssp EEEESCCSS------CCH-HHHHHHHTTTSCCCCEECCCC
T ss_pred EEEeCCCCC------CCH-HHHHHHhhccCCEEEEEEEec
Confidence 556666554 777 899999999999988877554
No 264
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.37 E-value=0.031 Score=36.76 Aligned_cols=37 Identities=8% Similarity=-0.076 Sum_probs=26.8
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc-cccC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH-LICG 215 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~-~~~~ 215 (216)
+.|.|||.. .++ ++|+++|++||.+.....+.. .++|
T Consensus 8 l~V~nLp~~------~te-~~l~~~F~~~G~i~~v~i~~~~~g~a 45 (88)
T 1wf0_A 8 VFVGRCTGD------MTE-DELREFFSQYGDVMDVFIPKPFRAFA 45 (88)
T ss_dssp EEEESCCSS------SCH-HHHHHHSTTTSCCCEEECCSSCCSCC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHcCCeeEEEEecCCCCEE
Confidence 455555554 777 899999999999988877643 4444
No 265
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=93.30 E-value=0.024 Score=37.79 Aligned_cols=37 Identities=5% Similarity=-0.095 Sum_probs=26.9
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc-cccC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH-LICG 215 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~-~~~~ 215 (216)
+.|.|||.. .++ ++|+++|++||.+.....+.. .++|
T Consensus 14 l~V~~Lp~~------~te-~~L~~~F~~~G~i~~v~i~~~srGfa 51 (89)
T 3d2w_A 14 VFVGRCTED------MTA-EELQQFFCQYGEVVDVFIPKPFRAFA 51 (89)
T ss_dssp EEEESCCTT------CCH-HHHHHHHTTTSCEEEEECCSSCCSEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHhccCCEEEEEEeeCCCCEE
Confidence 555555554 778 899999999999888776643 3444
No 266
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=93.22 E-value=0.048 Score=37.74 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.3
Q ss_pred cccchhhHHHhhhcCCCCccccccc
Q 037453 187 VNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
.++ ++|+++|++||.+..+.++.+
T Consensus 27 ~t~-~~l~~~F~~~G~i~~v~i~~~ 50 (115)
T 2dgo_A 27 ITT-EDIKAAFAPFGRISDARVVKD 50 (115)
T ss_dssp CCH-HHHHHHHGGGSCEEEEEEEEC
T ss_pred CCH-HHHHHHHHhcCCeEEEEEEEc
Confidence 777 899999999999888776654
No 267
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=93.08 E-value=0.021 Score=38.08 Aligned_cols=33 Identities=15% Similarity=-0.054 Sum_probs=24.2
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 19 l~v~nlp~~------~~~-~~l~~~F~~~G~i~~v~i~~~ 51 (95)
T 2ywk_A 19 VFVGNLEAR------VRE-EILYELFLQAGPLTKVTICKD 51 (95)
T ss_dssp EEEECCCTT------CCH-HHHHHHHGGGSCEEEEEEEEC
T ss_pred EEEECCCCC------CCH-HHHHHHHHhcCCEEEEEEEEC
Confidence 455555543 777 899999999999887766543
No 268
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=93.05 E-value=0.036 Score=40.11 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=30.8
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccccccC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHLICG 215 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~ 215 (216)
+.|+|+....+ ...++ ..|+++|++||.+..+..+.+..+|
T Consensus 5 I~VgnL~~~~~--~~tte-~~Lk~~Fs~fGeV~~~~li~Dp~Tg 45 (136)
T 2j8a_A 5 IVVYPAQDSTT--TNIQD-ISIKNYFKKYGEISHFEAFNDPNSA 45 (136)
T ss_dssp EEEEESSSSCC--CCCCH-HHHHHHHHTTSCCSEEEEEECTTTC
T ss_pred EEEeCCCCCCC--CCCCH-HHHHHHHHhcCCeEEEEEEecCCCC
Confidence 56677722211 22777 8999999999999999999887775
No 269
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=93.03 E-value=0.16 Score=36.12 Aligned_cols=26 Identities=4% Similarity=-0.028 Sum_probs=20.8
Q ss_pred ccccchhhHHHhhhcCCCCc--ccccccc
Q 037453 186 VVNISFHRTEAFNSFGGGDA--YKSVNHL 212 (216)
Q Consensus 186 ~~~~~~~l~~~F~~fG~~~~--~~~~~~~ 212 (216)
..++ ++|+++|++||.+.. ++++.+.
T Consensus 34 ~~te-~~L~~~F~~~G~v~~~~v~i~~d~ 61 (131)
T 2m2b_A 34 HSTM-DSILGALAPYAVLSSSNVRVIKDK 61 (131)
T ss_dssp TCCS-HHHHHHHGGGCCCCTTTEECCBCS
T ss_pred CCCH-HHHHHHHHHhCCcceeeEEEEEcC
Confidence 3777 899999999999966 6666554
No 270
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.98 E-value=0.088 Score=35.47 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=25.6
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 15 l~v~nLp~~------~t~-~~l~~~f~~~G~i~~v~i~~~ 47 (102)
T 1x5s_A 15 LFVGGLSFD------TNE-QSLEQVFSKYGQISEVVVVKD 47 (102)
T ss_dssp EEEESCCTT------CCH-HHHHHHHHHHSCCCEEEECCC
T ss_pred EEEECCCCC------CCH-HHHHHHHHhcCCeEEEEEEeC
Confidence 555555554 777 899999999999988877654
No 271
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.91 E-value=0.043 Score=36.85 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=22.6
Q ss_pred cccchhhHHHhhhcCCCCccccccccccCC
Q 037453 187 VNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
.++ ++|+++|++||.+..+.+.....+||
T Consensus 25 ~t~-~~l~~~F~~~G~i~~v~i~~~~g~af 53 (97)
T 1x5p_A 25 MTP-TLLRGAFSPFGNIIDLSMDPPRNCAF 53 (97)
T ss_dssp CCH-HHHHHHHTTTSCEEEEEEETTTTEEE
T ss_pred CCH-HHHHHHHhhCCCEEEEEecCCCCEEE
Confidence 666 88999999999988877765555553
No 272
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=92.88 E-value=0.033 Score=37.88 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=25.7
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..++.+.+
T Consensus 22 lfV~nLp~~------~te-~~L~~~F~~~G~I~~v~i~~d 54 (99)
T 4fxv_A 22 LIVNYLPQN------MTQ-DELRSLFSSIGEVESAKLIRD 54 (99)
T ss_dssp EEEESCCTT------CCH-HHHHHHHHTTSCEEEEEEEEC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCEEEeEeeec
Confidence 566666654 788 899999999999988776644
No 273
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.85 E-value=0.12 Score=36.32 Aligned_cols=29 Identities=14% Similarity=-0.022 Sum_probs=21.2
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYK 207 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~ 207 (216)
+.|.|||.. .++ ++|+++|++||.+....
T Consensus 28 l~V~nLp~~------~te-~~l~~~F~~~G~v~~~~ 56 (124)
T 1wel_A 28 VYLKGLPFE------AEN-KHVIDFFKKLDIVEDSI 56 (124)
T ss_dssp EEEECCCTT------CCH-HHHHHHSCSSCBCTTTC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCccceE
Confidence 445555543 777 89999999999987633
No 274
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=92.85 E-value=0.033 Score=38.71 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=20.8
Q ss_pred ccccchhhHHHhhhcCCCCccccccc
Q 037453 186 VVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 186 ~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
..++ ++|+++|++||.+...+++.+
T Consensus 17 ~~te-~~L~~~F~~~G~i~~v~i~~d 41 (110)
T 3s8s_A 17 NVRE-TFLKDMCRKYGEVEEVEILLH 41 (110)
T ss_dssp TCCH-HHHHHHHTTTSCEEEEEEEEC
T ss_pred CCCH-HHHHHHHHhcCCeeEEEEEEC
Confidence 3788 899999999999988776544
No 275
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.66 E-value=0.043 Score=37.20 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=24.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 18 l~V~nlp~~------~t~-~~l~~~f~~~G~i~~v~i~~~ 50 (103)
T 2cq0_A 18 IRVTNLSED------TRE-TDLQELFRPFGSISRIYLAKD 50 (103)
T ss_dssp EEEESCCTT------CCH-HHHHTTSTTTCCEEEEEEEEC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhCCCeEEEEEeec
Confidence 445555443 777 899999999999888776544
No 276
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.62 E-value=0.079 Score=35.61 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=24.7
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 20 l~v~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 52 (100)
T 2do4_A 20 LFISGLPFS------CTK-EELEEICKAHGTVKDLRLVTN 52 (100)
T ss_dssp EEEESCCTT------CCH-HHHHHHHTTTSCEEEEEEEEC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhCCCeEEEEEEEC
Confidence 555555554 777 899999999999877766543
No 277
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=92.61 E-value=0.17 Score=34.89 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=25.5
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHL 212 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~ 212 (216)
+.|.|||.. .++ ++|+++|++||.+...+.+.+.
T Consensus 28 l~V~nLp~~------~t~-~~l~~~F~~~G~i~~v~i~~~~ 61 (115)
T 2cpz_A 28 LFIYHLPQE------FGD-QDLLQMFMPFGNVVSAKVFIDK 61 (115)
T ss_dssp EEEESCCSS------CCH-HHHHHHHGGGSCCSEEEEEECS
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEEECC
Confidence 555555554 777 8999999999999887766543
No 278
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.40 E-value=0.093 Score=35.56 Aligned_cols=32 Identities=19% Similarity=0.003 Sum_probs=23.7
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++|| +..+.++.+
T Consensus 18 l~V~nlp~~------~t~-~~l~~~F~~~G-i~~v~i~~~ 49 (104)
T 1wi8_A 18 AFLGNLPYD------VTE-ESIKEFFRGLN-ISAVRLPRE 49 (104)
T ss_dssp EEEESCCSS------CCH-HHHHHHTTTSC-EEEEECCBC
T ss_pred EEEeCCCCc------CCH-HHHHHHHHHCC-ceEEEEecC
Confidence 455555554 777 89999999999 877776644
No 279
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.36 E-value=0.38 Score=42.57 Aligned_cols=56 Identities=21% Similarity=0.151 Sum_probs=46.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q 037453 65 STTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISG 129 (216)
Q Consensus 65 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g 129 (216)
...++|+ +|..+...+|.+.|+.||. ..|+++-| ..|||.|.+.+.|..++.+++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3577776 9999999999999999995 46666554 4799999999999999998863
No 280
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.07 E-value=0.099 Score=33.10 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=25.1
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|+|.. .++ ++|+++|++||.+.....+.+
T Consensus 3 l~v~nlp~~------~t~-~~l~~~F~~~G~v~~v~i~~~ 35 (77)
T 1uaw_A 3 MFIGGLSWQ------TTQ-EGLREYFGQFGEVKECLVMRD 35 (77)
T ss_dssp EEEESCCSS------CCS-HHHHHHHTTTSCCCCEEEECC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCEEEEEEecC
Confidence 455566654 777 889999999999888776554
No 281
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.00 E-value=0.093 Score=36.10 Aligned_cols=33 Identities=9% Similarity=-0.019 Sum_probs=24.9
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.||+.. .++ ++|+++|++||.+..+..+.+
T Consensus 32 l~V~nLp~~------~te-~~l~~~F~~~G~i~~v~i~~~ 64 (109)
T 2err_A 32 LHVSNIPFR------FRD-PDLRQMFGQFGKILDVEIIFN 64 (109)
T ss_dssp EEEESCCTT------CCH-HHHHHHGGGTCCCSCEEECCB
T ss_pred EEEECCCCc------CCH-HHHHHHHHhcCCEEEEEEEEC
Confidence 455555543 777 899999999999988777644
No 282
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.99 E-value=0.072 Score=35.28 Aligned_cols=32 Identities=9% Similarity=0.030 Sum_probs=24.0
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.
T Consensus 13 l~V~nLp~~------~t~-~~l~~~F~~~G~v~~v~~~~ 44 (92)
T 2dgt_A 13 LHVGNISPT------CTN-QELRAKFEEYGPVIECDIVK 44 (92)
T ss_dssp EEEESCCSS------CCH-HHHHHHHHTTSCCCEEEECS
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEEC
Confidence 455555544 777 89999999999988776653
No 283
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.95 E-value=0.046 Score=37.55 Aligned_cols=38 Identities=8% Similarity=-0.009 Sum_probs=28.0
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccccccCC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+..+||
T Consensus 28 l~V~nl~~~------~t~-~~l~~~F~~~G~i~~v~i~~~~g~af 65 (109)
T 1x4g_A 28 VYCGGIASG------LTD-QLMRQTFSPFGQIMEIRVFPEKGYSF 65 (109)
T ss_dssp EEEECCSSC------CCH-HHHHHHHHHHSCEEEEEEETTTTEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEeCCCCEEE
Confidence 455555543 777 89999999999988887776655553
No 284
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=91.77 E-value=0.11 Score=32.75 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=25.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHL 212 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~ 212 (216)
+.|.|+|.. .++ ++|+++|++||.+.....+.+.
T Consensus 2 l~v~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~~~ 35 (75)
T 2mss_A 2 IFVGGLSVN------TTV-EDVKHYFEQFGKVDDAMLMFDK 35 (75)
T ss_dssp EEEECCCSS------CCH-HHHHHHHHTTSCCSEECCCBCS
T ss_pred EEEecCCCC------CCH-HHHHHHHHhcCCEEEEEEEecC
Confidence 345566654 677 8899999999999887776543
No 285
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.77 E-value=0.11 Score=34.89 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=25.1
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 13 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 45 (99)
T 2dgs_A 13 IFVGGIPHN------CGE-TELREYFKKFGVVTEVVMIYD 45 (99)
T ss_dssp EEEESCCSS------CCH-HHHHHHHSSSSCEEEEEECCC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEEeC
Confidence 455555554 777 899999999999888777654
No 286
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.70 E-value=0.14 Score=34.12 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=23.5
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++||.+.....+.
T Consensus 18 l~v~nLp~~------~t~-~~l~~~F~~~G~v~~~~~~~ 49 (98)
T 2cqp_A 18 IKVQNMPFT------VSI-DEILDFFYGYQVIPGSVCLK 49 (98)
T ss_dssp EEEESCCTT------CCH-HHHHHHTTTSCCCTTTCEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHcCCccceEEEE
Confidence 455555554 777 89999999999987665543
No 287
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.63 E-value=0.11 Score=34.42 Aligned_cols=25 Identities=12% Similarity=-0.063 Sum_probs=19.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGG 203 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~ 203 (216)
+.|.|||.. .++ ++|+++|++||.+
T Consensus 11 l~V~nLp~~------~t~-~~l~~~F~~~G~v 35 (93)
T 2cqh_A 11 LYIGNLSPA------VTA-DDLRQLFGDRKLP 35 (93)
T ss_dssp EEEECCCTT------CCH-HHHHHHHHHTTCC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHcCCc
Confidence 556666554 777 8999999999983
No 288
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=91.60 E-value=0.33 Score=33.93 Aligned_cols=33 Identities=21% Similarity=0.052 Sum_probs=24.5
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.||+.. .++ ++|+++|++||.+..+.++.+
T Consensus 38 l~V~nlp~~------~t~-~~l~~~F~~~G~v~~v~i~~~ 70 (124)
T 2kt5_A 38 LLVSNLDFG------VSD-ADIQELFAEFGTLKKAAVDYD 70 (124)
T ss_dssp EEEESCCSS------CCH-HHHHHHHHTTSCCSEEEEECC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeeEEEEEEC
Confidence 455555543 777 889999999999988776553
No 289
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.54 E-value=0.075 Score=35.38 Aligned_cols=34 Identities=3% Similarity=-0.011 Sum_probs=25.0
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccc-ccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYK-SVNHL 212 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~-~~~~~ 212 (216)
+.|.|||.. .++ ++|+++|++||.+...+ .+.+.
T Consensus 18 l~V~nlp~~------~t~-~~l~~~F~~~G~v~~~~~i~~~~ 52 (96)
T 2e44_A 18 LQIRNIPPH------LQW-EVLDSLLVQYGVVESCEQVNTDS 52 (96)
T ss_dssp EEEEEECSS------SCH-HHHHHHHHHHSCEEEEEEECCSS
T ss_pred EEEEcCCCC------CCH-HHHHHHHHhcCCeEEEEEeecCC
Confidence 566666654 677 88999999999988774 44443
No 290
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.46 E-value=0.18 Score=34.55 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=20.0
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGD 204 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~ 204 (216)
+.|.|||.. .++ ++|+++|++||.+.
T Consensus 18 l~V~nLp~~------~t~-~~l~~~F~~~G~i~ 43 (113)
T 2cpe_A 18 IYVQGLNDS------VTL-DDLADFFKQCGVVK 43 (113)
T ss_dssp EEEECCCTT------CCH-HHHHHHHTTTSCBC
T ss_pred EEEcCCCCC------CCH-HHHHHHHHhcCCEe
Confidence 455555543 777 89999999999987
No 291
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.44 E-value=0.17 Score=34.94 Aligned_cols=32 Identities=3% Similarity=-0.042 Sum_probs=23.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCC-Ccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGG-DAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~-~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++||.+ ..+.++.
T Consensus 18 l~V~nLp~~------~t~-~~l~~~F~~~g~v~~~v~i~~ 50 (114)
T 2cpy_A 18 AHITNIPFS------ITK-MDVLQFLEGIPVDENAVHVLV 50 (114)
T ss_dssp EEEESCCTT------SCH-HHHHHHTTTSCCCSTTEEECC
T ss_pred EEEeCcCCc------CCH-HHHHHHHHhCCCcCCeEEEEE
Confidence 455555554 777 8899999999988 6666654
No 292
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=91.38 E-value=0.063 Score=36.21 Aligned_cols=37 Identities=11% Similarity=-0.086 Sum_probs=26.7
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc-cccC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH-LICG 215 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~-~~~~ 215 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+ ..+|
T Consensus 3 l~V~nLp~~------~t~-~~l~~~F~~~G~i~~v~i~~~~~g~a 40 (101)
T 2hvz_A 3 VYVGNLGTG------AGK-GELERAFSYYGPLRTVWIARNPPGFA 40 (101)
T ss_dssp EEEECCCSS------CSH-HHHHHHHHHHCCCSEEEEESSSSSEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEeeCCCCEE
Confidence 345555554 777 899999999999988776654 4443
No 293
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=91.34 E-value=0.12 Score=35.05 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=23.7
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSV 209 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~ 209 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+
T Consensus 14 l~V~nl~~~------~t~-~~l~~~F~~~G~i~~v~~~ 44 (103)
T 2dgu_A 14 LFVRNLANT------VTE-EILEKAFSQFGKLERVKKL 44 (103)
T ss_dssp EEEECCCTT------CCH-HHHHHHHHHHSCEEEEEEC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCEEEEEEE
Confidence 555555554 777 8999999999998776655
No 294
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.23 E-value=0.1 Score=34.30 Aligned_cols=32 Identities=13% Similarity=0.006 Sum_probs=24.1
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.
T Consensus 12 l~V~nlp~~------~t~-~~l~~~F~~~G~v~~~~~~~ 43 (90)
T 2dnp_A 12 IFVGNVSAA------CTS-QELRSLFERRGRVIECDVVK 43 (90)
T ss_dssp EEEESCCTT------CCH-HHHHHHHHHHSCEEEEEECS
T ss_pred EEEeCCCCC------CCH-HHHHHHHHcCCCEEEEEEEC
Confidence 555665554 777 89999999999987766553
No 295
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.22 E-value=0.15 Score=33.99 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=20.8
Q ss_pred ccccchhhHHHhhhcCCCC-cccccccc
Q 037453 186 VVNISFHRTEAFNSFGGGD-AYKSVNHL 212 (216)
Q Consensus 186 ~~~~~~~l~~~F~~fG~~~-~~~~~~~~ 212 (216)
..++ ++|+++|++||.+. ..+.+.+.
T Consensus 20 ~~t~-~~l~~~F~~~G~i~~~v~i~~~~ 46 (99)
T 2div_A 20 YMDE-NFISRAFATMGETVMSVKIIRNR 46 (99)
T ss_dssp TCCH-HHHHHHHHHTTCCCCEEEEEECS
T ss_pred CCCH-HHHHHHHHHhCCcceEEEEeecC
Confidence 3777 89999999999988 77665443
No 296
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=91.21 E-value=0.08 Score=36.47 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=18.9
Q ss_pred cccchhhHHHhhhcCCCCccccc
Q 037453 187 VNISFHRTEAFNSFGGGDAYKSV 209 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~~~~~ 209 (216)
.++ ++|+++|++||.+..+..+
T Consensus 43 ~t~-~~L~~~F~~~G~i~~v~i~ 64 (108)
T 2jvo_A 43 VQE-SELNEIFGPFGPMKEVKIL 64 (108)
T ss_dssp CCH-HHHHHHHTTTSCCCEEEEE
T ss_pred CCH-HHHHHHHHhcCCEEEEEEE
Confidence 777 8999999999998877665
No 297
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=91.19 E-value=0.13 Score=32.40 Aligned_cols=32 Identities=16% Similarity=0.029 Sum_probs=24.2
Q ss_pred ccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 173 LLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 173 ~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
.|.|||.. .++ ++|+++|++||.+.....+.+
T Consensus 3 ~v~nLp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 34 (75)
T 1iqt_A 3 FVGGLSPD------TPE-EKIREYFGGFGEVESIELPMD 34 (75)
T ss_dssp EESCCCSS------CCH-HHHHHHHHHHSCCSEECCCCS
T ss_pred EEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEEec
Confidence 44555554 777 899999999999988776543
No 298
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=90.69 E-value=0.099 Score=34.06 Aligned_cols=33 Identities=12% Similarity=-0.027 Sum_probs=24.9
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+.....+.+
T Consensus 14 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 46 (87)
T 3s7r_A 14 MFVGGLSWD------TSK-KDLKDYFTKFGEVVDCTIKMD 46 (87)
T ss_dssp EEEECCCTT------CCH-HHHHHHHTTTSCEEEEEEEEC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhCCCEEEEEEeec
Confidence 455555554 777 899999999999888776544
No 299
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=90.67 E-value=0.17 Score=34.07 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=24.0
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCC--CCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGG--GDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~--~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||. ...++.+.+
T Consensus 12 lfV~nL~~~------~te-e~L~~~F~~~G~i~v~~v~i~~d 46 (95)
T 2lkz_A 12 IILRNIAPH------TVV-DSIMTALSPYASLAVNNIRLIKD 46 (95)
T ss_dssp EEEESCCTT------CCH-HHHHHHSTTTCCCCGGGEECCCC
T ss_pred EEEeCCCCc------CCH-HHHHHHHHhhCCccEEEEEEEec
Confidence 566666665 788 899999999996 445665544
No 300
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=90.51 E-value=0.13 Score=33.89 Aligned_cols=33 Identities=21% Similarity=0.098 Sum_probs=24.5
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcC--CCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFG--GGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG--~~~~~~~~~~ 211 (216)
+.|.||+.. .++ ++|+++|++|| .+...+.+.+
T Consensus 4 l~V~nL~~~------~t~-~~l~~~F~~~G~~~v~~v~i~~~ 38 (90)
T 3p5t_L 4 LYIGNLTWW------TTD-EDLTEAVHSLGVNDILEIKFFEN 38 (90)
T ss_dssp CEEESCCTT------CCH-HHHHHHHHTTTCCCCCCEEEEEC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHhCCCceEEEEEEec
Confidence 455556554 777 89999999999 8877766544
No 301
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.49 E-value=0.082 Score=34.83 Aligned_cols=31 Identities=10% Similarity=0.073 Sum_probs=23.1
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSV 209 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~ 209 (216)
+.|.|||.. .++ ++|+++|++||.+..+...
T Consensus 11 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~v~~~ 41 (90)
T 2dnq_A 11 LFIGNLPRE------ATE-QEIRSLFEQYGKVLECDII 41 (90)
T ss_dssp EEEESCCSS------CCH-HHHHHHHHTSSCEEEEEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhCCCEEEEEEE
Confidence 455555554 777 8999999999998776654
No 302
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=90.29 E-value=0.097 Score=34.46 Aligned_cols=32 Identities=16% Similarity=-0.069 Sum_probs=23.6
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++||.+.......
T Consensus 11 l~V~nlp~~------~t~-~~l~~~f~~~G~v~~~~i~~ 42 (92)
T 2dgv_A 11 IFVRNLPFD------FTW-KMLKDKFNECGHVLYADIKM 42 (92)
T ss_dssp EEECSCCTT------CCH-HHHHHHHHTTSCEEEEEEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCEEEEEEEc
Confidence 455555543 777 88999999999988766553
No 303
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.21 E-value=0.063 Score=42.87 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=25.3
Q ss_pred ccchhhHHHhhhcCCCCccccccccccCC
Q 037453 188 NISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 188 ~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
++ ++|+++|++||.+..++.+...+|||
T Consensus 156 tE-e~L~~~F~~fG~I~~v~v~~~kG~AF 183 (240)
T 3u1l_A 156 IE-SRIRFVFSRLGDIDRIRYVESKNCGF 183 (240)
T ss_dssp HH-HHHHHHHHTTSCEEEEEEEGGGTEEE
T ss_pred cH-HHHHHHHHccCCEEEEEEECCCCEEE
Confidence 56 89999999999999999998888876
No 304
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.20 E-value=0.2 Score=33.98 Aligned_cols=31 Identities=10% Similarity=-0.169 Sum_probs=22.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCc-cccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDA-YKSV 209 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~-~~~~ 209 (216)
+.|.|||.. .++ ++|+++|.+||.+.. +..+
T Consensus 18 l~V~nLp~~------~te-~~l~~~F~~~G~v~~~v~i~ 49 (104)
T 1wg5_A 18 VRLRGLPFG------CSK-EEIVQFFSGLEIVPNGMTLP 49 (104)
T ss_dssp EEEESCCTT------CCH-HHHHHHTTTCCEEEEEEECC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCcceeEEEE
Confidence 555555554 777 899999999998765 4443
No 305
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=90.15 E-value=0.31 Score=33.61 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=20.1
Q ss_pred cccchhhHHHhhhcCCCCccccccc
Q 037453 187 VNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
.++ ++|+++|++||.+..++.+.+
T Consensus 52 ~t~-~~l~~~F~~~G~i~~~~i~~~ 75 (118)
T 2khc_A 52 FTD-TDLASTFLPFGNVISAKVFID 75 (118)
T ss_dssp CCH-HHHHHHTTTSCEEEEEEECCC
T ss_pred CCH-HHHHHHHHhcCCEEEEEEEeC
Confidence 777 899999999999888776644
No 306
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=90.13 E-value=0.11 Score=36.26 Aligned_cols=34 Identities=12% Similarity=-0.005 Sum_probs=25.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHL 212 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~ 212 (216)
+.|.|||.. .++ ++|+++|++||.+..+.++.+.
T Consensus 10 l~V~nLp~~------~t~-~~l~~~F~~~G~i~~v~i~~~~ 43 (116)
T 2fy1_A 10 LFIGGLNRE------TNE-KMLKAVFGKHGPISEVLLIKDR 43 (116)
T ss_dssp EEEECCTTT------CCH-HHHHHHHHTSSCCSEEEEECST
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCEEEEEEEECC
Confidence 455555543 777 8999999999999887776543
No 307
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.12 E-value=0.14 Score=35.27 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=20.3
Q ss_pred cccchhhHHHhhhcCCCCccccccc
Q 037453 187 VNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
.++ ++|+++|++||.+..+..+.+
T Consensus 37 ~t~-~~l~~~F~~~G~i~~v~i~~~ 60 (114)
T 2cq4_A 37 IRP-RDLEDFFSAVGKVRDVRIISD 60 (114)
T ss_dssp CCH-HHHHHHHTTTSCEEEEEECCS
T ss_pred CCH-HHHHHHHHhCCCEeEEEEEec
Confidence 777 899999999999888777643
No 308
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=90.10 E-value=0.16 Score=34.77 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=22.9
Q ss_pred cccccCCCCCCchhc-cccchhhHHHhhhcCCCCcccc
Q 037453 172 ILLLTLLNFMCWSDV-VNISFHRTEAFNSFGGGDAYKS 208 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~-~~~~~~l~~~F~~fG~~~~~~~ 208 (216)
..++ |.++ +.. .++ ++|+++|++||.+..+..
T Consensus 28 ~~l~-V~nl---~~~~~t~-~~l~~~F~~~G~v~~v~i 60 (110)
T 1wf1_A 28 SRVF-IGNL---NTALVKK-SDVETIFSKYGRVAGCSV 60 (110)
T ss_dssp SEEE-ECSC---CCSSCCH-HHHHHHHGGGSCCSEEEE
T ss_pred cEEE-EeCC---CcccCCH-HHHHHHHHhCCCeEEEEE
Confidence 3455 5555 333 566 899999999999877655
No 309
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.01 E-value=0.18 Score=33.44 Aligned_cols=33 Identities=18% Similarity=0.094 Sum_probs=24.6
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcc-ccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAY-KSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~-~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+ ..+.+
T Consensus 8 l~V~nLp~~------~t~-~~l~~~F~~~G~i~~~~~i~~~ 41 (96)
T 1x5t_A 8 IFIGNLDPE------IDE-KLLYDTFSAFGVILQTPKIMRD 41 (96)
T ss_dssp EEEECCCTT------CCH-HHHHHHHHTTSCBSSCCEECCC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeeEEEEEEEc
Confidence 455555554 777 8999999999999887 66554
No 310
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=90.00 E-value=0.11 Score=34.64 Aligned_cols=33 Identities=9% Similarity=-0.102 Sum_probs=24.6
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+.....+.+
T Consensus 5 l~V~nLp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 37 (96)
T 2x1f_A 5 VYLGSIPYD------QTE-EQILDLCSNVGPVINLKMMFD 37 (96)
T ss_dssp EEEESCCTT------CCH-HHHHHHHHTTSCEEEEECCBC
T ss_pred EEEECCCCC------CCH-HHHHHHHHhcCCEEEEEEEeC
Confidence 445555544 777 899999999999888777644
No 311
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.95 E-value=0.16 Score=33.86 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=25.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHL 212 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~ 212 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+.
T Consensus 11 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~~~ 44 (99)
T 1whw_A 11 LFVRNLSYT------SSE-EDLEKLFSAYGPLSELHYPIDS 44 (99)
T ss_dssp EEEECCCTT------CCH-HHHHHHHHTTSCEEEEECCCCT
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCEeEEEEEecC
Confidence 455555554 777 8999999999998887776543
No 312
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=89.83 E-value=0.07 Score=34.39 Aligned_cols=33 Identities=15% Similarity=-0.022 Sum_probs=24.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|+|.. .++ ++|+++|++||.+.....+.+
T Consensus 4 l~V~nlp~~------~t~-~~l~~~f~~~G~i~~~~i~~~ 36 (83)
T 3md1_A 4 LFVGDLNVN------VDD-ETLRNAFKDFPSYLSGHVMWD 36 (83)
T ss_dssp EEEECCCTT------CCH-HHHHHHHTTSTTEEEEEEEEC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeeEEEEEEc
Confidence 445556554 777 899999999999887766543
No 313
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=89.75 E-value=0.12 Score=39.49 Aligned_cols=78 Identities=9% Similarity=-0.035 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHh--CCceeCCeeEEEEeeCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCcccccCCCCCCchhccccchh
Q 037453 116 SREDTEDAVKYI--SGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEY-RTDYDPDILLLTLLNFMCWSDVVNISFH 192 (216)
Q Consensus 116 ~~~~a~~Al~~l--~g~~l~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~s~~~~~~~~~~ 192 (216)
+.+.+..|+... ....+.+....|......+.. .....+ .......+.|.|+|.. .++ ++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p----------~~~~~~~~~~~~~~l~V~nLp~~------~t~-~~ 125 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLP----------EVTDEYKNDVKNRSVYIKGFPTD------ATL-DD 125 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCC----------CCCHHHHHHHHHTEEEEECCCTT------CCH-HH
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCc----------ccchhhhhccccCEEEecCCCCc------CCH-HH
Confidence 567788888866 455666655555544110000 000000 0001122455555553 677 88
Q ss_pred hHHHhhhcCCCCcccccc
Q 037453 193 RTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 193 l~~~F~~fG~~~~~~~~~ 210 (216)
|+++|++||.+..+..+.
T Consensus 126 L~~~F~~~G~v~~v~i~~ 143 (193)
T 2voo_A 126 IKEWLEDKGQVLNIQMRR 143 (193)
T ss_dssp HHHHHTTSCCEEEEEEEE
T ss_pred HHHHHhcCCCEEEEEEEE
Confidence 999999999988776553
No 314
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=89.65 E-value=0.095 Score=35.44 Aligned_cols=40 Identities=13% Similarity=-0.183 Sum_probs=27.3
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHL 212 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~ 212 (216)
+.|.|||....-....++ ++|+++|++||.+....++.+.
T Consensus 9 vfV~nLp~v~~~~~~~~~-~~L~~~F~~~G~i~~v~i~~d~ 48 (100)
T 3ns6_A 9 IVVNGAPVIPSAKVPVLK-KALTSLFSKAGKVVNMEFPIDE 48 (100)
T ss_dssp EEEESCCCCBGGGHHHHH-HHHHHHHHTTSCEEEEECCEET
T ss_pred EEEeCCCcCChHHHHHHH-HHHHHHHHhcCCEeEEEEEEcC
Confidence 556666653222224667 8899999999999887776443
No 315
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=89.46 E-value=0.14 Score=34.65 Aligned_cols=33 Identities=6% Similarity=0.019 Sum_probs=24.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 26 l~V~nlp~~------~t~-~~l~~~f~~~G~i~~v~i~~~ 58 (106)
T 1p27_B 26 LFVTGVHEE------ATE-EDIHDKFAEYGEIKNIHLNLD 58 (106)
T ss_dssp EEEECCCTT------CCH-HHHHHHHGGGSCEEEEEEEEC
T ss_pred EEEeCCCCC------CCH-HHHHHHHhccCCeEEEEEEec
Confidence 445555543 777 899999999999888776543
No 316
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=89.46 E-value=0.19 Score=33.93 Aligned_cols=32 Identities=9% Similarity=-0.090 Sum_probs=22.6
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++|| +..+..+.+
T Consensus 18 l~V~nLp~~------~t~-~~l~~~F~~~g-i~~v~i~~~ 49 (103)
T 2dng_A 18 AYVGNLPFN------TVQ-GDIDAIFKDLS-IRSVRLVRD 49 (103)
T ss_dssp EEEESCCTT------CCH-HHHHHHTTTSC-EEEEEEEEC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhCC-ceEEEEeec
Confidence 445555543 777 89999999995 777666544
No 317
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=89.33 E-value=0.095 Score=34.11 Aligned_cols=32 Identities=19% Similarity=0.128 Sum_probs=24.6
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.
T Consensus 7 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~~~i~~ 38 (88)
T 4a8x_A 7 VHIGRLTRN------VTK-DHIMEIFSTYGKIKMIDMPV 38 (88)
T ss_dssp EEEECCCTT------CCH-HHHHHHHHTTSCEEEEECCE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhCCCEEEEEEEe
Confidence 455566554 777 89999999999988777654
No 318
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.32 E-value=0.081 Score=35.37 Aligned_cols=32 Identities=9% Similarity=0.021 Sum_probs=24.5
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.
T Consensus 8 l~V~nLp~~------~t~-~~l~~~F~~~G~i~~v~i~~ 39 (98)
T 2cpf_A 8 LFIKNLNFS------TTE-ETLKGVFSKVGAIKSCTISK 39 (98)
T ss_dssp EEEESCCTT------CCH-HHHHHHHHTTSCEEEEEEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEEe
Confidence 555565554 777 89999999999988777663
No 319
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.30 E-value=0.12 Score=34.86 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=25.1
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 11 l~V~nlp~~------~~~-~~l~~~f~~~G~i~~~~i~~~ 43 (104)
T 1p1t_A 11 VFVGNIPYE------ATE-EQLKDIFSEVGPVVSFRLVYD 43 (104)
T ss_dssp EEEESCCTT------SCH-HHHHHHHHTTSCCSEEEEEEE
T ss_pred EEEeCCCCc------CCH-HHHHHHHHhcCCeeEEEEEeC
Confidence 555566554 777 889999999999988776644
No 320
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=89.23 E-value=0.19 Score=34.29 Aligned_cols=33 Identities=9% Similarity=0.051 Sum_probs=24.7
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 29 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 61 (110)
T 1oo0_B 29 LFVTSIHEE------AQE-DEIQEKFCDYGEIKNIHLNLD 61 (110)
T ss_dssp EEEESCCTT------CCH-HHHHHHHGGGSCEEEEECCBC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCEEEEEEEec
Confidence 455555543 777 899999999999888777644
No 321
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.14 E-value=0.21 Score=33.42 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=20.0
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhc--CCCCccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSF--GGGDAYK 207 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~f--G~~~~~~ 207 (216)
+.|.|||.. .++ ++|+++|++| |.+....
T Consensus 18 l~V~nLp~~------~t~-~~l~~~F~~~g~g~v~~~~ 48 (99)
T 2cpd_A 18 LYVRNLMLS------TSE-EMIEKEFNNIKPGAVERVK 48 (99)
T ss_dssp EEEESCCTT------CCH-HHHHHHHHTTSTTCEEEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCcceEEEE
Confidence 455555543 777 8999999999 5555444
No 322
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.14 E-value=0.14 Score=35.08 Aligned_cols=33 Identities=6% Similarity=-0.089 Sum_probs=24.8
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 14 lfV~~Lp~~------~te-~~L~~~F~~~G~v~~v~i~~d 46 (103)
T 1s79_A 14 VYIKGFPTD------ATL-DDIKEWLEDKGQVLNIQMRRT 46 (103)
T ss_dssp EEEECCCTT------CCH-HHHHHHHHTSSCEEEEEEECC
T ss_pred EEEECCCCC------CCH-HHHHHHHhhcCCEEEEEEEEC
Confidence 455555554 777 899999999999888776653
No 323
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=89.13 E-value=0.11 Score=33.78 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=24.3
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+.....+.+
T Consensus 9 l~v~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 41 (87)
T 3bs9_A 9 VFVGDLSPE------ITT-AAIAAAFAPFGRISDARVVKD 41 (87)
T ss_dssp EEEESCCTT------CCH-HHHHHHHGGGSCEEEEEEEEC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCEeEEEEEec
Confidence 445555543 777 899999999999887766544
No 324
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=89.11 E-value=0.56 Score=35.26 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=20.5
Q ss_pred ccccchhhHHHhhhcCCCCccccccc
Q 037453 186 VVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 186 ~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
..++ ++|+++|++||.+..+.++.+
T Consensus 99 ~~te-~~L~~~F~~~G~I~~v~i~~d 123 (177)
T 2f3j_A 99 GVSD-ADIQELFAEFGTLKKAAVDYD 123 (177)
T ss_dssp CCCH-HHHHHHHHHTSCCSEEEECCC
T ss_pred CCCH-HHHHHHHHhcCCeEEEEEEEC
Confidence 3777 899999999999988776543
No 325
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=88.94 E-value=0.16 Score=32.73 Aligned_cols=32 Identities=19% Similarity=0.034 Sum_probs=24.1
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.
T Consensus 10 l~V~nl~~~------~~~-~~l~~~f~~~G~i~~v~i~~ 41 (85)
T 3mdf_A 10 LYVGGLAEE------VDD-KVLHAAFIPFGDITDIQIPL 41 (85)
T ss_dssp EEEECCCTT------CCH-HHHHHHHGGGSCEEEEECCE
T ss_pred EEEECCCCC------CCH-HHHHHHHhccCCEEEEEEEE
Confidence 455555554 777 89999999999988876644
No 326
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.92 E-value=0.19 Score=34.73 Aligned_cols=24 Identities=4% Similarity=-0.002 Sum_probs=20.7
Q ss_pred cccchhhHHHhhhcCCCCccccccc
Q 037453 187 VNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
.++ ++|+++|.+||.+..+.++.+
T Consensus 39 ~te-~~l~~~F~~~G~i~~v~i~~~ 62 (116)
T 1x4b_A 39 TTE-ESLRNYYEQWGKLTDCVVMRD 62 (116)
T ss_dssp CCH-HHHHHHHTSSCCCSEEEEECC
T ss_pred CCH-HHHHHHHHhcCCEEEEEEEEC
Confidence 777 899999999999988877654
No 327
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=88.84 E-value=0.14 Score=36.08 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=23.7
Q ss_pred cccchhhHHHhhhcCCCCccccccccccCC
Q 037453 187 VNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
.++ ++|+++|++||.+..+......++||
T Consensus 49 ~te-~~L~~~F~~~G~I~~v~i~~~kg~aF 77 (121)
T 2bz2_A 49 MTP-TLLRGAFSPFGNIIDLSMDPPRNCAF 77 (121)
T ss_dssp CCH-HHHHHHHSTTCCCSCEEEETTTTEEE
T ss_pred CCH-HHHHHHHHccCCEEEEEEeCCCCEEE
Confidence 666 89999999999998888776666654
No 328
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.79 E-value=0.39 Score=32.87 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=24.6
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+....++.+
T Consensus 28 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~~~i~~~ 60 (114)
T 1x5o_A 28 LYISNLPLS------MDE-QELENMLKPFGQVISTRILRD 60 (114)
T ss_dssp EEEESCCTT------CCH-HHHHHTTTTTSCEEEEEEEEC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCEEEEEEEEC
Confidence 455555554 777 899999999999887766544
No 329
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.74 E-value=0.11 Score=35.12 Aligned_cols=33 Identities=18% Similarity=-0.018 Sum_probs=24.6
Q ss_pred cccccCCCCCCchhccccchhhHHHhhh-cCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNS-FGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~-fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++ ||.+.....+.+
T Consensus 12 l~V~nLp~~------~t~-~~l~~~F~~~~G~v~~v~i~~~ 45 (104)
T 2dhg_A 12 LFVGDLTPD------VDD-GMLYEFFVKVYPSCRGGKVVLD 45 (104)
T ss_dssp EEEECCCTT------CCH-HHHHHHHHHHCTTEEEEEEEEC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHhCCCeEEEEEEEC
Confidence 555555554 777 899999999 999877766543
No 330
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=88.74 E-value=0.13 Score=34.03 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=23.6
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++||.+.....+.
T Consensus 18 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~~~~~~ 49 (95)
T 2ek1_A 18 IKVQNMPFT------VSI-DEILDFFYGYQVIPGSVCLK 49 (95)
T ss_dssp EEEECCCTT------CCH-HHHHHHTTTSCBCTTCCEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCccceEEEE
Confidence 555555554 777 89999999999987655543
No 331
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=88.74 E-value=0.18 Score=34.60 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=25.1
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.||+.. .++ ++|+++|++||.+..+..+.+
T Consensus 28 lfV~nLp~~------~te-~~L~~~F~~~G~i~~v~i~~~ 60 (109)
T 2rs2_A 28 MFIGGLSWQ------TTQ-EGLREYFGQFGEVKECLVMRD 60 (109)
T ss_dssp EEEESCCTT------CCH-HHHHHHHTTTSCEEEEEECCC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHccCCeEEEEEEEC
Confidence 455555544 777 899999999999888777654
No 332
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=88.69 E-value=0.34 Score=32.29 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=21.3
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDA 205 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~ 205 (216)
+.|.||+.. .++ ++|+++|++||.+..
T Consensus 16 l~V~nLp~~------~t~-~~l~~~F~~~G~i~~ 42 (99)
T 2la6_A 16 IFVQGLGEN------VTI-ESVADYFKQIGIIKT 42 (99)
T ss_dssp EEEECCCSS------CCH-HHHHHHHTTTSCBCE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHhCCEee
Confidence 555555554 777 899999999999887
No 333
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.67 E-value=0.24 Score=33.98 Aligned_cols=35 Identities=17% Similarity=0.063 Sum_probs=26.1
Q ss_pred CcccccCCCCCCchhccccchhhH---HHhhhcCCCCcccccccc
Q 037453 171 DILLLTLLNFMCWSDVVNISFHRT---EAFNSFGGGDAYKSVNHL 212 (216)
Q Consensus 171 ~~~v~~~~~~~s~~~~~~~~~~l~---~~F~~fG~~~~~~~~~~~ 212 (216)
.+.|.|||.. .++ ++|+ ++|++||.+.....+.+.
T Consensus 17 ~l~V~nLp~~------~~~-~~l~~~~~~F~~~G~i~~v~i~~~~ 54 (111)
T 2cpi_A 17 LVFVVGLSQR------LAD-PEVLKRPEYFGKFGKIHKVVINNST 54 (111)
T ss_dssp CEEEEEECTT------TCC-HHHHHSTTTTTTTSCEEEEEEECCS
T ss_pred EEEEECCCCC------CCH-HHHHHHHHHhhccCCEEEEEEecCC
Confidence 3566666664 777 7888 999999998887776543
No 334
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=88.63 E-value=0.16 Score=35.58 Aligned_cols=33 Identities=6% Similarity=0.019 Sum_probs=24.8
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 25 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 57 (126)
T 3ex7_B 25 LFVTGVHEE------ATE-EDIHDKFAEYGEIKNIHLNLD 57 (126)
T ss_dssp EEEESCCTT------CCH-HHHHHHHHTTSCEEEEECCBC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEEec
Confidence 455555543 777 899999999999988777644
No 335
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.58 E-value=0.11 Score=33.72 Aligned_cols=33 Identities=9% Similarity=-0.014 Sum_probs=24.5
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+.....+.+
T Consensus 8 l~v~nlp~~------~t~-~~l~~~f~~~G~i~~~~i~~~ 40 (85)
T 1x4e_A 8 LYIRGLQPG------TTD-QDLVKLCQPYGKIVSTKAILD 40 (85)
T ss_dssp EEEESCCTT------CCH-HHHHTTSTTTSCEEEEEEECC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEEec
Confidence 455555544 777 889999999999888776544
No 336
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=88.52 E-value=0.22 Score=34.67 Aligned_cols=31 Identities=6% Similarity=-0.170 Sum_probs=23.2
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcC-CCCccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFG-GGDAYKSV 209 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG-~~~~~~~~ 209 (216)
+.|.|||.. .++ ++|+++|++|| .+....+.
T Consensus 31 l~VgnLp~~------~te-~dL~~~F~~~G~~v~~v~i~ 62 (111)
T 2jvr_A 31 ITMKNLPEG------CSW-QDLKDLARENSLETTFSSVN 62 (111)
T ss_dssp EEEECSSCC------CCH-HHHHHHHHHHTCCCSEEECS
T ss_pred EEEECCCCC------CCH-HHHHHHHHHhCCeeEEEEEE
Confidence 566666654 677 88999999999 77766654
No 337
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.47 E-value=0.13 Score=35.09 Aligned_cols=31 Identities=3% Similarity=-0.167 Sum_probs=23.1
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCC-CCccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGG-GDAYKSV 209 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~-~~~~~~~ 209 (216)
+.|.|||.. .++ ++|+++|.+||. +.....+
T Consensus 11 l~V~nLp~~------~t~-~~l~~~f~~~G~~v~~v~i~ 42 (109)
T 2dis_A 11 LFIGGIPKM------KKR-EEILEEIAKVTEGVLDVIVY 42 (109)
T ss_dssp EEEECCCTT------SCH-HHHHHHHHHHSTTEEEEECC
T ss_pred EEEeCCCCc------CCH-HHHHHHHHHhcCCceEEEEE
Confidence 455555543 777 899999999998 7776665
No 338
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=88.44 E-value=0.12 Score=34.43 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=18.6
Q ss_pred cccchhhHHHhhhcCCCCccccc
Q 037453 187 VNISFHRTEAFNSFGGGDAYKSV 209 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~~~~~ 209 (216)
.++ ++|+++|++||.+..+...
T Consensus 23 ~t~-~~l~~~F~~~G~v~~v~i~ 44 (96)
T 2kvi_A 23 VSK-EDLFRIFSPYGHIMQINIK 44 (96)
T ss_dssp CCH-HHHHHHHTTTCCCCEEEEE
T ss_pred CCH-HHHHHHHHhcCCEEEEEEe
Confidence 777 8999999999998876653
No 339
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=88.43 E-value=0.12 Score=33.22 Aligned_cols=37 Identities=11% Similarity=-0.193 Sum_probs=23.3
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSV 209 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~ 209 (216)
+.|.|||....-+...++ ++|+++|++||.+.....+
T Consensus 4 l~V~nLp~~~~~~~~~t~-~~l~~~F~~~G~i~~v~i~ 40 (81)
T 2krb_A 4 IVVDNVPQVGPDRLEKLK-NVIHKIFSKFGKITNDFYP 40 (81)
T ss_dssp EEEESCCCCCTTTHHHHH-HHHHHHHHTTCCEEEEECC
T ss_pred EEEeCCCCCcHHHHHHHH-HHHHHHHhhcCCeEEEEec
Confidence 455666653110101145 7899999999998877665
No 340
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.37 E-value=0.17 Score=33.39 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=24.7
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+....+
T Consensus 8 l~v~nlp~~------~t~-~~l~~~f~~~G~v~~v~i~~~ 40 (95)
T 2dnz_A 8 LYVGSLHFN------ITE-DMLRGIFEPFGKIDNIVLMKD 40 (95)
T ss_dssp EEEESCCTT------CCH-HHHHHHHTTTSCEEEEEEECC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCEeEEEEeec
Confidence 455555554 777 899999999999888776554
No 341
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.32 E-value=0.16 Score=33.92 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=24.1
Q ss_pred cccccCCCCCCchhccccchhhH----HHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRT----EAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~----~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+ ++|++||.+....++.+
T Consensus 12 l~V~nL~~~------~~~-~~l~~~l~~~F~~~G~v~~v~i~~~ 48 (96)
T 2dgx_A 12 VQVSNIDYR------LSR-KELQQLLQEAFARHGKVKSVELSPH 48 (96)
T ss_dssp EEEESCCTT------SCH-HHHHHHHHHHHHHHSCEEEEEECSC
T ss_pred EEEECCCCC------CCH-HHHHHHHHHhccccCcEEEEEEEeC
Confidence 455555554 666 7788 99999999888777644
No 342
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=88.24 E-value=0.24 Score=33.61 Aligned_cols=37 Identities=11% Similarity=-0.193 Sum_probs=23.3
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSV 209 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~ 209 (216)
+.|.|||....-....++ ++|+++|++||.+.....+
T Consensus 18 l~V~nLp~~~~~~~~~t~-~~l~~~F~~~G~v~~v~i~ 54 (105)
T 2nlw_A 18 IVVDNVPQVGPDRLEKLK-NVIHKIFSKFGKITNDFYP 54 (105)
T ss_dssp EEEESCCCCCTTTTTHHH-HHHHHHHGGGSCEEEEECC
T ss_pred EEEeCCCcchhhhhHHHH-HHHHHHHhcCCCEEEEEee
Confidence 556666653100000045 7899999999998887665
No 343
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=88.15 E-value=0.18 Score=32.83 Aligned_cols=33 Identities=9% Similarity=-0.028 Sum_probs=24.5
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|+|.. .++ ++|+++|++||.+.....+.+
T Consensus 9 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 41 (89)
T 3ucg_A 9 IYVGNVDYG------ATA-EELEAHFHGCGSVNRVTILCD 41 (89)
T ss_dssp EEEESCCTT------CCH-HHHHHHHGGGCCEEEEEEEES
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhCCCEEEEEEEec
Confidence 455555554 677 889999999999887766544
No 344
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.15 E-value=0.25 Score=33.06 Aligned_cols=26 Identities=15% Similarity=-0.058 Sum_probs=19.3
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGD 204 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~ 204 (216)
+.|.|||.. .++ ++|+++|++||.+.
T Consensus 18 l~V~nLp~~------~t~-~~l~~~F~~~g~v~ 43 (101)
T 2fc9_A 18 LVLSNLSYS------ATE-ETLQEVFEKATFIK 43 (101)
T ss_dssp EEEESCCTT------CCH-HHHHHHCSSCSEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhCCEEE
Confidence 455555543 777 89999999999763
No 345
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=88.00 E-value=0.28 Score=35.38 Aligned_cols=32 Identities=6% Similarity=-0.099 Sum_probs=23.1
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCC---CCcccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGG---GDAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~---~~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++||. +..+..+.
T Consensus 47 lfVgnLp~~------~te-~dL~~~F~~~G~v~~v~~v~i~~ 81 (136)
T 2hgl_A 47 VKLRGLPWS------CSV-EDVQNFLSDCTIHDGAAGVHFIY 81 (136)
T ss_dssp EEEESCCTT------CCH-HHHHHHTTTCCCSSSSTTEEEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHhCCcCceeEEEEEE
Confidence 455555554 777 889999999998 56665553
No 346
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.97 E-value=0.46 Score=32.71 Aligned_cols=30 Identities=17% Similarity=0.041 Sum_probs=22.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSV 209 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~ 209 (216)
+.|.|||.. .++ ++|+++|++||.+. ...+
T Consensus 11 lfVgnLp~~------~te-~~L~~~F~~~G~i~-~~~~ 40 (114)
T 2dnl_A 11 VFVGGLPPD------IDE-DEITASFRRFGPLV-VDWP 40 (114)
T ss_dssp EEEECCCTT------CCH-HHHHHHTTTTCCCC-EECT
T ss_pred EEEcCCCCC------CCH-HHHHHHHHhcCCEE-EEEe
Confidence 555555554 777 89999999999987 4444
No 347
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=87.73 E-value=0.14 Score=34.33 Aligned_cols=21 Identities=14% Similarity=0.051 Sum_probs=18.0
Q ss_pred cccchhhHHHhhhcCCCCcccc
Q 037453 187 VNISFHRTEAFNSFGGGDAYKS 208 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~~~~ 208 (216)
.++ ++|+++|++||.+..+..
T Consensus 35 ~t~-~~L~~~F~~~G~v~~v~i 55 (97)
T 2xnq_A 35 VSK-EDLFRIFSPYGHIMQINI 55 (97)
T ss_dssp CCH-HHHHHHHGGGSCEEEEEE
T ss_pred CCH-HHHHHHHHhcCCEEEEEE
Confidence 777 899999999999877665
No 348
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.36 E-value=0.34 Score=32.82 Aligned_cols=30 Identities=7% Similarity=-0.129 Sum_probs=21.3
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSV 209 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~ 209 (216)
+.|.|||.. .++ ++|+++|++||.. .+.++
T Consensus 18 l~V~nLp~~------~te-~~l~~~F~~~G~~-~v~i~ 47 (102)
T 1wez_A 18 VHMRGLPYR------ATE-NDIYNFFSPLNPM-RVHIE 47 (102)
T ss_dssp EEEESCCTT------CCH-HHHHHSSCSCCCS-EEEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHcCce-EEEEE
Confidence 555565554 777 8899999999943 55544
No 349
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=87.18 E-value=0.16 Score=33.25 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=24.8
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+.....+.+
T Consensus 4 l~V~nLp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 36 (90)
T 2ki2_A 4 IYVGNLVYS------ATS-EQVKELFSQFGKVFNVKLIYD 36 (90)
T ss_dssp EEEEEECTT------SSH-HHHTTTHHHHTCCSEEEECCC
T ss_pred EEECCCCCC------CCH-HHHHHHHHhcCCEEEEEEEEc
Confidence 345555554 677 889999999999988776644
No 350
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=86.97 E-value=0.2 Score=34.52 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=23.3
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSV 209 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~ 209 (216)
+.|.|||.. .++ ++|+++|++||.+.....+
T Consensus 11 l~V~nlp~~------~t~-~~l~~~F~~~G~v~~v~i~ 41 (115)
T 3lqv_A 11 LYIRNLPYK------ITA-EEMYDIFGKYGPIRQIRVG 41 (115)
T ss_dssp EEEESCCTT------CCH-HHHHHHHHTTSCEEEEEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEe
Confidence 455555543 777 8899999999998876664
No 351
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=86.77 E-value=0.23 Score=34.07 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=24.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+..+.+
T Consensus 29 l~V~nLp~~------~te-~~l~~~F~~~G~i~~v~i~~~ 61 (108)
T 2jrs_A 29 LYVGSLHFN------ITE-DMLRGIFEPFGRIESIQLMMD 61 (108)
T ss_dssp EEEECCCSS------CCH-HHHHHHHTTTSCEEEEEEEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEEEc
Confidence 455555543 777 899999999999887776543
No 352
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.58 E-value=0.29 Score=32.39 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=21.3
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAY 206 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~ 206 (216)
+.|.|||.. .++ ++|+++|++||.+..+
T Consensus 11 l~V~nl~~~------~t~-~~l~~~F~~~G~v~~v 38 (94)
T 2e5g_A 11 VFVSGFPRG------VDS-AQLSEYFLAFGPVASV 38 (94)
T ss_dssp EEEECCCTT------CCH-HHHHHHGGGTSCEEEE
T ss_pred EEEECCCCC------CCH-HHHHHHHHhcCCeEEE
Confidence 455555554 777 8999999999988764
No 353
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=86.51 E-value=0.16 Score=33.70 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=22.4
Q ss_pred cccccCCCCCCchhccccchhhH----HHhhhcCCCCccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRT----EAFNSFGGGDAYKSV 209 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~----~~F~~fG~~~~~~~~ 209 (216)
+.|.|||.. .++ ++|+ ++|++||.+..+...
T Consensus 11 l~V~nLp~~------~~~-~~l~~~l~~~f~~~G~i~~v~i~ 45 (97)
T 1nu4_A 11 IYINNLNEK------IKK-DELKKSLHAIFSRFGQILDILVS 45 (97)
T ss_dssp EEEESCCTT------SCH-HHHHHHHHHHHGGGSCEEEEECC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHHHHhCCCEEEEEEE
Confidence 455555554 666 7788 999999998776654
No 354
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=86.03 E-value=0.27 Score=33.00 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=24.0
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++||.+.....+.
T Consensus 12 l~V~nLp~~------~t~-~~l~~~F~~~G~i~~v~i~~ 43 (102)
T 2xs2_A 12 VFVGGIDVR------MDE-TEIRSFFARYGSVKEVKIIT 43 (102)
T ss_dssp EEEECCCTT------CCH-HHHHHHHGGGSCEEEEEEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhCCCeEEEEEEE
Confidence 455555544 777 89999999999988776654
No 355
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.98 E-value=0.5 Score=32.34 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=19.9
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDA 205 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~ 205 (216)
+.|.|||.. .++ ++|+++|++||.+..
T Consensus 28 l~V~nLp~~------~t~-~~l~~~f~~~G~v~~ 54 (115)
T 2cpx_A 28 LYLKNLSPR------VTE-RDLVSLFARFQEKKG 54 (115)
T ss_dssp EEEECCCTT------CCH-HHHHHHTHHHHHSSS
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHhCCccc
Confidence 445555443 777 899999999998843
No 356
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=85.85 E-value=0.26 Score=35.08 Aligned_cols=34 Identities=9% Similarity=-0.141 Sum_probs=20.6
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKS 208 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~ 208 (216)
+.|.||+...+.+++.+ .|.++|++||.+..+..
T Consensus 32 LfV~nL~~~~~e~~L~~---~L~~~F~~~G~I~~v~i 65 (127)
T 2a3j_A 32 VLITNINPEVPKEKLQA---LLYALASSQGDILDIVV 65 (127)
T ss_dssp EEEESCCTTSCHHHHHH---HHHHHHHHHSCEEEEEE
T ss_pred EEEeCCCCCCCHHHHHH---HHHHHhccCCCeEEEEe
Confidence 56666665533332222 26689999999866544
No 357
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=85.49 E-value=0.18 Score=32.67 Aligned_cols=22 Identities=9% Similarity=-0.050 Sum_probs=16.2
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSF 200 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~f 200 (216)
+.|.|||.. .++ ++|+++|++|
T Consensus 9 l~V~nLp~~------~t~-~~l~~~F~~~ 30 (87)
T 2hzc_A 9 LYVGNIPFG------ITE-EAMMDFFNAQ 30 (87)
T ss_dssp EEEESCCTT------CCH-HHHHHHHHHH
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHH
Confidence 445555543 677 8999999999
No 358
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=85.30 E-value=0.2 Score=37.51 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=20.0
Q ss_pred ccccchhhHHHhhhcCCCCcccccc
Q 037453 186 VVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 186 ~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
..++ ++|+++|++||.+..+.+..
T Consensus 57 ~vte-d~L~~~Fs~fG~V~~V~i~~ 80 (164)
T 1sjr_A 57 PVTL-DVLHQIFSKFGTVLKIITFT 80 (164)
T ss_dssp CCCH-HHHHHHHHHHSCEEEEEEEE
T ss_pred CCCH-HHHHHHHHhcCCEEEEEEEe
Confidence 3777 88999999999988877653
No 359
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=85.24 E-value=0.21 Score=35.60 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=19.4
Q ss_pred cccchhhHHHhhhcCCCCcccccc
Q 037453 187 VNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
.++ ++|+++|++||.+..+.+..
T Consensus 37 vt~-~~L~~~Fs~yG~V~~v~i~~ 59 (124)
T 2e5i_A 37 ITV-DVLYTVCNPVGKVQRIVIFK 59 (124)
T ss_dssp CCH-HHHHHHHTTTSCEEEEEEEE
T ss_pred CCH-HHHHHHHHhcCCEEEEEEEe
Confidence 777 88999999999988876654
No 360
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=84.99 E-value=0.23 Score=34.70 Aligned_cols=33 Identities=9% Similarity=-0.028 Sum_probs=24.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.||+.. .++ ++|+++|++||.+..+..+.+
T Consensus 39 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 71 (124)
T 2jwn_A 39 VYVGNVDYG------STA-QDLEAHFSSCGSINRITILCD 71 (124)
T ss_dssp EEEEEECTT------CCH-HHHHHHHHTTSCEEEEEEEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCEEEEEEEec
Confidence 455555543 777 899999999999887776543
No 361
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=84.98 E-value=0.88 Score=30.83 Aligned_cols=33 Identities=9% Similarity=-0.107 Sum_probs=23.6
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCC---CCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGG---GDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~---~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||. +..+.++.+
T Consensus 14 l~V~nLp~~------~te-~~l~~~F~~~g~~~~v~~v~i~~~ 49 (107)
T 2lmi_A 14 IRAQGLPWS------CTM-EDVLNFFSDCRIRNGENGIHFLLN 49 (107)
T ss_dssp EEEECCCSS------CCS-HHHHHHTTTSCBTTTTTTEECCCC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCcCCcceEEEEEC
Confidence 555666654 777 889999999887 666665543
No 362
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=84.92 E-value=0.29 Score=36.10 Aligned_cols=33 Identities=9% Similarity=0.041 Sum_probs=24.2
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcC--CCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFG--GGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG--~~~~~~~~~~ 211 (216)
+.|.||+.. .++ ++|+++|++|| .+..++++.+
T Consensus 58 lfVgnLp~~------~te-~~L~~~F~~~G~i~v~~v~i~~d 92 (156)
T 3n9u_C 58 VYVGSFSWW------TTD-QQLIQVIRSIGVYDVVELKFAEN 92 (156)
T ss_dssp EEEECCCTT------CCH-HHHHHHHHHTTCCCEEEEEEEEC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHHCCccEEEEEEEec
Confidence 455555443 777 89999999999 7877776544
No 363
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=84.91 E-value=0.36 Score=35.19 Aligned_cols=33 Identities=12% Similarity=-0.046 Sum_probs=24.6
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
+.|.|||.. .++ ++|+++|++||.+..+.++.+
T Consensus 42 l~V~nlp~~------~t~-~~l~~~F~~~G~i~~v~i~~~ 74 (156)
T 1h2v_Z 42 LYVGNLSFY------TTE-EQIYELFSKSGDIKKIIMGLD 74 (156)
T ss_dssp EEEESCCTT------CCH-HHHHHHHGGGSCEEEEEEEEC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhcCCeEEEEEEec
Confidence 455555543 777 899999999999888777544
No 364
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=84.90 E-value=0.63 Score=32.31 Aligned_cols=31 Identities=10% Similarity=-0.119 Sum_probs=22.2
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCC---CCccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGG---GDAYKSV 209 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~---~~~~~~~ 209 (216)
+.|.|||.. .++ ++|+++|++||. +..+..+
T Consensus 20 l~V~nLp~~------~te-~~l~~~F~~~G~~~~v~~v~i~ 53 (118)
T 2db1_A 20 VKLRGLPWS------CSI-EDVQNFLSDCTIHDGVAGVHFI 53 (118)
T ss_dssp EEEESCCTT------CCH-HHHHHHTTTSCBTTGGGGEEEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHcCCccCceeEEEE
Confidence 455555554 777 889999999998 5555554
No 365
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=84.81 E-value=0.46 Score=33.78 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=20.5
Q ss_pred ccccchhhHHHhhhcCCCCccccccc
Q 037453 186 VVNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 186 ~~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
..++ ++|+++|++||.+..+..+.+
T Consensus 53 ~~~~-~~l~~~F~~~G~i~~v~i~~~ 77 (139)
T 1u6f_A 53 TVDE-VQLRQLFERYGPIESVKIVCD 77 (139)
T ss_dssp TCCH-HHHHHHHHHHSCEEEEEEEEE
T ss_pred CCCH-HHHHHHHHhcCCeEEEEEEEc
Confidence 3777 899999999999888776644
No 366
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.98 E-value=0.87 Score=31.17 Aligned_cols=19 Identities=11% Similarity=-0.073 Sum_probs=16.1
Q ss_pred hhhHHHhhhcCCCCccccc
Q 037453 191 FHRTEAFNSFGGGDAYKSV 209 (216)
Q Consensus 191 ~~l~~~F~~fG~~~~~~~~ 209 (216)
++|+++|++||.+....+.
T Consensus 41 ~~l~~~f~~~G~v~~v~i~ 59 (112)
T 2dit_A 41 EDLRVECSKFGQIRKLLLF 59 (112)
T ss_dssp HHHHHHGGGTSCCSEEEEE
T ss_pred HHHHHHHHccCCEeEEEEe
Confidence 6899999999999887544
No 367
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=83.63 E-value=0.47 Score=30.92 Aligned_cols=36 Identities=11% Similarity=-0.019 Sum_probs=24.9
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCccccccccccC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVNHLICG 215 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~~~~~~ 215 (216)
+.|.|||.. .++ ++|+++|++| .+.........++|
T Consensus 8 l~V~nLp~~------~t~-~~l~~~F~~~-~v~~~~i~~~~g~a 43 (88)
T 1wg1_A 8 ILVKNLPQD------SNC-QEVHDLLKDY-DLKYCYVDRNKRTA 43 (88)
T ss_dssp EEEESCCSS------CCH-HHHHHHTCSS-CCCCEEEEGGGTEE
T ss_pred EEEeCCCCC------CCH-HHHHHHHhhC-CeEEEEEeCCCcEE
Confidence 566666654 777 8999999999 87776654334443
No 368
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=83.46 E-value=0.41 Score=34.32 Aligned_cols=28 Identities=14% Similarity=0.043 Sum_probs=21.5
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAY 206 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~ 206 (216)
+.|.|||.. .++ ++|+++|++||.+...
T Consensus 48 l~V~nLp~~------~te-~~L~~~F~~~G~i~~~ 75 (143)
T 3egn_A 48 IYVKNLAKH------VQE-KDLKYIFGRYVDFSSE 75 (143)
T ss_dssp EEEEEECTT------CCH-HHHHHHHGGGCCTTCH
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHhCCcccc
Confidence 555565554 777 8999999999998764
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.32 E-value=0.24 Score=33.75 Aligned_cols=22 Identities=5% Similarity=-0.176 Sum_probs=18.5
Q ss_pred cccchhhHHHhhhcCCCCccccc
Q 037453 187 VNISFHRTEAFNSFGGGDAYKSV 209 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~~~~~ 209 (216)
.++ ++|+++|++||.+..+..+
T Consensus 29 ~te-~~L~~~F~~~G~V~~v~i~ 50 (100)
T 2d9o_A 29 YSK-DVLLRLLQKYGEVLNLVLS 50 (100)
T ss_dssp CCH-HHHHHHHHTTSCEEEEEEE
T ss_pred CCH-HHHHHHHHhcCCEEEEEEc
Confidence 566 8999999999998877665
No 370
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=82.49 E-value=0.41 Score=37.60 Aligned_cols=34 Identities=21% Similarity=0.074 Sum_probs=25.2
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcC--CCCcccccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFG--GGDAYKSVNHL 212 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG--~~~~~~~~~~~ 212 (216)
+.|.||+.. +++ ++|+++|++|| .+..++++.+.
T Consensus 71 lfVgnL~~~------~te-~~L~~~F~~~G~~~v~~v~i~~d~ 106 (229)
T 3q2s_C 71 LYIGNLTWW------TTD-EDLTEAVHSLGVNDILEIKFFENR 106 (229)
T ss_dssp EEEESCCTT------CCH-HHHHHHHHTTTCCCEEEEEEEECT
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHHCCcceEEEEEEecC
Confidence 455555543 777 89999999999 88887776553
No 371
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=82.13 E-value=0.39 Score=34.46 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=22.6
Q ss_pred CCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 177 LLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 177 ~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
|.|+ ....++ ++|+++|++||.+..+.+..
T Consensus 33 V~NL---~~~vte-~~L~~lFs~yG~V~~V~i~~ 62 (130)
T 3zzy_A 33 VENL---FYPVTL-DVLHQIFSKFGTVLKIITFT 62 (130)
T ss_dssp EESC---CSCCCH-HHHHHHHTTSSCEEEEEEEE
T ss_pred ECCC---CCCCCH-HHHHHHHhCcCCEEEEEEEc
Confidence 5554 233788 89999999999988876554
No 372
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=81.94 E-value=0.46 Score=31.72 Aligned_cols=27 Identities=7% Similarity=-0.001 Sum_probs=20.0
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDA 205 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~ 205 (216)
+.|.|||.. .++ ++|+++|++||.+..
T Consensus 20 l~V~nLp~~------~t~-~~l~~~F~~~G~v~~ 46 (101)
T 1fj7_A 20 LFIGNLNPN------KSV-AELKVAISELFAKND 46 (101)
T ss_dssp EEEECCCTT------SCH-HHHHHHHHHHHHHHT
T ss_pred EEEeCCCCC------CCH-HHHHHHHHHhCCcce
Confidence 445555543 777 899999999997665
No 373
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=80.77 E-value=5.3 Score=25.15 Aligned_cols=68 Identities=9% Similarity=0.127 Sum_probs=42.1
Q ss_pred EEEEc-CCCCCCCHHHHHHHhhccC-----CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 037453 67 TVYVG-NMSFYTTEEQIYELFSRAG-----EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGTILDDRPIRVD 140 (216)
Q Consensus 67 ~l~V~-nLp~~~te~~l~~~F~~~G-----~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~~l~g~~l~V~ 140 (216)
++||. +--..++..+|..++..-+ .|-.|.+. ..|.||+-.. +.|..++..|++..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 45553 1133466677887776544 34456662 2488998764 57888999999999999999988
Q ss_pred eeC
Q 037453 141 FDW 143 (216)
Q Consensus 141 ~a~ 143 (216)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 763
No 374
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=80.63 E-value=0.69 Score=38.82 Aligned_cols=29 Identities=14% Similarity=-0.019 Sum_probs=23.8
Q ss_pred cccchhhHHHhhhcCCCCccccccccccCC
Q 037453 187 VNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
.++ ++|+++|++||.+..+.....++.||
T Consensus 32 ~te-~~L~~~F~~~G~V~~v~~~~~kgfaF 60 (345)
T 3tht_A 32 VSR-NQLLPVLEKCGLVDALLMPPNKPYSF 60 (345)
T ss_dssp CCH-HHHHHHHHTTSCEEEEECCTTCSEEE
T ss_pred CCH-HHHHHHHHhcCCeEEEEEeCCCCEEE
Confidence 778 89999999999998877766665554
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.52 E-value=0.36 Score=34.25 Aligned_cols=44 Identities=16% Similarity=-0.102 Sum_probs=29.3
Q ss_pred CCCCcccccCCCCCCchhc-cccchhhHHHhhhcCCCCccccccccccCC
Q 037453 168 YDPDILLLTLLNFMCWSDV-VNISFHRTEAFNSFGGGDAYKSVNHLICGW 216 (216)
Q Consensus 168 ~~~~~~v~~~~~~~s~~~~-~~~~~~l~~~F~~fG~~~~~~~~~~~~~~~ 216 (216)
+..+..++ +.++ ... .+. ++|+++|++||.+..+..+.....||
T Consensus 15 ~~~G~il~-v~~l---~~~~~sr-edLke~F~~~G~V~~Vd~~~g~~tgf 59 (121)
T 1owx_A 15 EKIGCLLK-FSGD---LDDQTCR-EDLHILFSNHGEIKWIDFVRGAKEGI 59 (121)
T ss_dssp CCCCCEEE-EEES---CCSSCCH-HHHHHHTCSSCCEEEEECCTTCSEEE
T ss_pred ccCCeEEE-EecC---CCCcCCH-HHHHHHHHhcCCEEEEEEecCCCEEE
Confidence 34555555 5554 333 556 88999999999987777665554443
No 376
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=81.46 E-value=0.34 Score=33.42 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=16.0
Q ss_pred cccchhhHHHhhhcCCCCc
Q 037453 187 VNISFHRTEAFNSFGGGDA 205 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~ 205 (216)
.++ ++|+++|++||.+..
T Consensus 19 ~t~-~~l~~~F~~~G~i~~ 36 (116)
T 2lcw_A 19 VTI-ESVADYFKQIGIIKT 36 (116)
Confidence 777 889999999999876
No 377
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=80.20 E-value=0.61 Score=31.18 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=19.0
Q ss_pred cccchhhHHHhhhcCCCCccccccc
Q 037453 187 VNISFHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 187 ~~~~~~l~~~F~~fG~~~~~~~~~~ 211 (216)
.++ ++|+++|++|| +.....+.+
T Consensus 31 ~t~-~~l~~~F~~~G-i~~v~i~~~ 53 (100)
T 2j76_E 31 VTE-ESIKEFFRGLN-ISAVRLPRE 53 (100)
T ss_dssp CSS-SHHHHHSCSSC-EEEEECSCC
T ss_pred CCH-HHHHHHHHhcC-CeEEEEEec
Confidence 777 89999999999 888776644
No 378
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.50 E-value=1.4 Score=28.55 Aligned_cols=31 Identities=16% Similarity=-0.055 Sum_probs=23.1
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++| ++....++.
T Consensus 13 l~v~nLp~~------~t~-~~l~~~F~~~-~i~~v~i~~ 43 (91)
T 2dgw_A 13 VKLRGAPFN------VTE-KNVMEFLAPL-KPVAIRIVR 43 (91)
T ss_dssp EEEECCCSS------CCH-HHHHHHHTTS-CCSEEEEEE
T ss_pred EEEECCCCC------CCH-HHHHHHHhhC-CceEEEEEE
Confidence 566666654 777 8899999999 877766554
No 379
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=78.97 E-value=0.89 Score=32.26 Aligned_cols=31 Identities=10% Similarity=-0.182 Sum_probs=21.5
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCC--cccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGD--AYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~--~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++| ++. .+.++.
T Consensus 45 lfVgnLp~~------~te-~dL~~~F~~~-~i~~~~v~i~~ 77 (126)
T 2hgm_A 45 VRLRGLPFG------CTK-EEIVQFFSGL-EIVPNGITLPV 77 (126)
T ss_dssp EEEECCCTT------CCH-HHHHHHTTTS-CEEEEEEECCC
T ss_pred EEEeCCCCC------CCH-HHHHHHHhcC-CceeeEEEEEE
Confidence 455555554 777 8999999999 555 555543
No 380
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.87 E-value=0.95 Score=31.13 Aligned_cols=31 Identities=10% Similarity=-0.013 Sum_probs=22.7
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcccccc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAYKSVN 210 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~~~~~ 210 (216)
+.|.|||.. .++ ++|+++|++| .+..+.++.
T Consensus 19 v~V~nLp~~------~te-~dl~~~F~~~-~v~~v~i~~ 49 (109)
T 2dnn_A 19 VSVHGMPFS------AME-NDVRDFFHGL-RVDAVHLLK 49 (109)
T ss_dssp EEEECCCSS------CCH-HHHHHHTTTS-CCCEEEECC
T ss_pred EEEeCCCCC------CCH-HHHHHHhccC-CeeEEEEEE
Confidence 555566554 777 8999999999 777666553
No 381
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.62 E-value=1.4 Score=31.03 Aligned_cols=25 Identities=8% Similarity=-0.154 Sum_probs=19.1
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGG 203 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~ 203 (216)
+.|.|||.. .++ ++|+++|++||.+
T Consensus 26 v~V~nLp~~------~te-~dl~~~F~~~g~v 50 (123)
T 2dha_A 26 VRMRGLPFT------ATA-EEVVAFFGQHCPI 50 (123)
T ss_dssp EEECSCCTT------CCH-HHHHHHHHTTSCC
T ss_pred EEEeCCCCC------CCH-HHHHHHHHhhCCc
Confidence 555555554 777 8999999999975
No 382
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=72.01 E-value=0.75 Score=30.25 Aligned_cols=28 Identities=14% Similarity=-0.094 Sum_probs=20.4
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCCCCcc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGGGDAY 206 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~~~~~ 206 (216)
+.|.|||.. .++ ++|+++|++||.+...
T Consensus 19 l~V~nL~~~------~t~-~~l~~~F~~~g~v~~~ 46 (96)
T 1fjc_A 19 LLAKNLSFN------ITE-DELKEVFEDALEIRLV 46 (96)
T ss_dssp EEEESCCSS------CCH-HHHHHHHCSEEEECCE
T ss_pred EEEeCCCCC------CCH-HHHHHHHhhCCcEEEe
Confidence 455555544 777 8999999999976554
No 383
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.13 E-value=1.9 Score=29.16 Aligned_cols=31 Identities=10% Similarity=-0.095 Sum_probs=17.8
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcC-CCCc
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFG-GGDA 205 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG-~~~~ 205 (216)
+.|.|||....-+.++ ..|+++|++|| .+-.
T Consensus 12 lYV~NL~~~~~~~~lk---~~L~~lF~~yGG~Vl~ 43 (96)
T 2diu_A 12 LYVYNLPANKDGKSVS---NRLRRLSDNCGGKVLS 43 (96)
T ss_dssp EEEESCCTTSCHHHHH---HHHHHHHHTTTCCEEE
T ss_pred EEEeCCCCcCCHHHHH---HHHHHHHHHcCCeeEE
Confidence 4567777652222222 23779999996 5533
No 384
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.84 E-value=3.4 Score=27.22 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=17.5
Q ss_pred cccccCCCCCCchhccccchhhHHHhhhcCC
Q 037453 172 ILLLTLLNFMCWSDVVNISFHRTEAFNSFGG 202 (216)
Q Consensus 172 ~~v~~~~~~~s~~~~~~~~~~l~~~F~~fG~ 202 (216)
+.|.|||.. .++ ++|+++|+.|+.
T Consensus 18 l~V~nLp~~------~t~-~~l~~~F~~~~~ 41 (102)
T 2fc8_A 18 LFVKGLSED------TTE-ETLKESFDGSVR 41 (102)
T ss_dssp EEEECCCTT------CCH-HHHHHTSTTCSE
T ss_pred EEEeCCCCc------cCH-HHHHHHhcCCeE
Confidence 555555554 777 889999998854
No 385
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=46.37 E-value=9.1 Score=26.32 Aligned_cols=21 Identities=19% Similarity=0.010 Sum_probs=17.0
Q ss_pred hhhHHHhhhcCCCCccccccc
Q 037453 191 FHRTEAFNSFGGGDAYKSVNH 211 (216)
Q Consensus 191 ~~l~~~F~~fG~~~~~~~~~~ 211 (216)
++|++.|++||.+....+...
T Consensus 32 edl~~~f~kfG~V~~v~i~~~ 52 (114)
T 3s6e_A 32 DDVIEECNKHGGVIHIYVDKN 52 (114)
T ss_dssp HHHHHHHTTTTCCSEEEECTT
T ss_pred HHHHHHHhccCCEEEEEEecC
Confidence 578999999999988766544
No 386
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=34.58 E-value=93 Score=23.11 Aligned_cols=57 Identities=7% Similarity=0.004 Sum_probs=38.5
Q ss_pred cEEEEcCCCC-C--------CCHHHHHHHh--hccCCeeEEEEeecCCCCCcccEEEEEec-CHHHHHHHHH
Q 037453 66 TTVYVGNMSF-Y--------TTEEQIYELF--SRAGEIKKIIMGLDKNSKTPCGFCFALFY-SREDTEDAVK 125 (216)
Q Consensus 66 ~~l~V~nLp~-~--------~te~~l~~~F--~~~G~i~~v~i~~d~~tg~~~g~afV~F~-~~~~a~~Al~ 125 (216)
..+.|-|+|. . .+..+|++.| +.|.++. |+.+.++. .+.|++.|.|. +-.--..|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHH
Confidence 4566778876 2 3347899977 8997755 55555443 37899999997 4455555665
No 387
>3oak_C Transcription elongation factor SPT6; transcription factor complex, nucleus; 2.15A {Saccharomyces cerevisiae}
Probab=33.00 E-value=19 Score=18.73 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=14.4
Q ss_pred hhhHHHhhhcCCCCccc
Q 037453 191 FHRTEAFNSFGGGDAYK 207 (216)
Q Consensus 191 ~~l~~~F~~fG~~~~~~ 207 (216)
..|.+++.-||.+..|.
T Consensus 8 ~aledm~eiFGdG~dY~ 24 (31)
T 3oak_C 8 DKIDEMYDIFGDGHDYD 24 (31)
T ss_dssp HHHHHHHHHHCCSCTTH
T ss_pred HHHHHHHHHhCCCchhh
Confidence 56889999999998874
No 388
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.83 E-value=11 Score=27.36 Aligned_cols=28 Identities=25% Similarity=0.178 Sum_probs=15.4
Q ss_pred HHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEec
Q 037453 80 EQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFY 115 (216)
Q Consensus 80 ~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~ 115 (216)
+++.++|...|.|+.. .+ .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwf---n~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---NV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---ET-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEE---EC-----CCCeeEEeeC
Confidence 3455666666655433 22 5799999975
No 389
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=24.61 E-value=1.5e+02 Score=19.46 Aligned_cols=58 Identities=10% Similarity=0.016 Sum_probs=44.0
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh
Q 037453 62 LLASTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYI 127 (216)
Q Consensus 62 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l 127 (216)
....+-+-|-|+|..+-..++.-.....|---.|..+ .|-|.|.|.+.++..-|+..|
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 3467888899999999888877666666654445442 367899999999999999865
No 390
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=23.03 E-value=1.3e+02 Score=21.99 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=29.1
Q ss_pred CCHHHHHHHhhccCCe---eEEEEeecCCCCCcccEEEEE
Q 037453 77 TTEEQIYELFSRAGEI---KKIIMGLDKNSKTPCGFCFAL 113 (216)
Q Consensus 77 ~te~~l~~~F~~~G~i---~~v~i~~d~~tg~~~g~afV~ 113 (216)
.|+++|+++=...|.+ .+..+..|..+|..+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5889999999999977 466677775588888888764
No 391
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=22.90 E-value=88 Score=21.11 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=26.2
Q ss_pred CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCc
Q 037453 91 EIKKIIMGLDKNSKTPCGFCFALFYSREDTEDAVKYISGT 130 (216)
Q Consensus 91 ~i~~v~i~~d~~tg~~~g~afV~F~~~~~a~~Al~~l~g~ 130 (216)
.|.++..+. ..+||-||+=.+..++..|++.+.+.
T Consensus 40 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPE-----HVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECT-----TCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecC-----CCceEEEEEeCCHHHHHHHHhcccce
Confidence 466665432 26899999999999999998866543
No 392
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.87 E-value=52 Score=26.11 Aligned_cols=32 Identities=13% Similarity=0.363 Sum_probs=25.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeeEEEEe
Q 037453 66 TTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMG 98 (216)
Q Consensus 66 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~ 98 (216)
..+.|+|||+.++..-|.+++.. ..+....++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 56789999999999999999977 555554443
Done!