BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037454
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 167 TMFQNRSILR---AESHPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCAL 223
+ QN ++++ +E+HP LHG +F+V+ G G F + S NL P RNT
Sbjct: 429 VILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEE-SSLNLKNPPLRNTVVIFP 487
Query: 224 GGWVAPRFLAHSPVVC 239
GW A RF+A +P V
Sbjct: 488 YGWTAIRFVADNPGVW 503
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 180 HPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSP 236
HP+ LHG +FF+V Q + F+ ++ P+KFNL P R+ G++A F +P
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNP 519
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 180 HPLQLHGFNFFVVEQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPRFLAHSP 236
HP+ LHG +FF+V Q + F+ ++ P+KFNL P R+ G++A F +P
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNP 519
>pdb|4G6X|A Chain A, Crystal Structure Of GlyoxalaseBLEOMYCIN RESISTANCE
PROTEIN FROM Catenulispora Acidiphila
Length = 155
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 135 FTNKLGTLAISHVPVNAPKTLTCNSSPEGPNGTMFQNRSILRAESH 180
+T KLG L + VPV A + LT SPE P+GT +L SH
Sbjct: 44 YTGKLGFLVKADVPVGADRWLTV-VSPEAPDGTQL----LLEPSSH 84
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 180 HPLQLHGFNFFVV---------EQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPR 230
HP+ LHG +F V+ Q FDP ++ N P R+T GGW+
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 231 FLAHSP 236
F +P
Sbjct: 491 FRTDNP 496
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 180 HPLQLHGFNFFVV---------EQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPR 230
HP+ LHG +F V+ Q FDP ++ N P R+T GGW+
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 231 FLAHSP 236
F +P
Sbjct: 491 FRTDNP 496
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 180 HPLQLHGFNFFVV---------EQGSGNFDPNKHPSKFNLFYPIERNTEWCALGGWVAPR 230
HP+ LHG +F V+ Q FDP ++ N P R+T GGW+
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 231 FLAHSP 236
F +P
Sbjct: 491 FRTDNP 496
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 180 HPLQLHGFNFFVVEQGSGN---------FDPNKHPSKFNLFYPIERNTEWCALGGWVAPR 230
HP+ LHG +F V+ + FDP K + P+ R+ GGW+
Sbjct: 472 HPMHLHGHDFLVLGRSPDELPSAGVRHIFDPAKDLPRLKGNNPVRRDVTMLPAGGWLLLA 531
Query: 231 FLAHSP 236
F +P
Sbjct: 532 FKTDNP 537
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 64 VTIIEADAVHVKPFETKTLHSFPPDRQQKFL--SKPNATFFTTARPYVTGQGTSDNSTKP 121
+TIIEAD+++ +P E ++ F R L S+P ++ A P G +
Sbjct: 218 MTIIEADSINTQPLEVDSIQIFAAQRYSFVLDASQPVDNYWIRANPAFGNTGFAGGINSA 277
Query: 122 IL 123
IL
Sbjct: 278 IL 279
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 63 RVTIIEADAVHVKPFETKTLHSFPPDRQQKFL--SKPNATFFTTARPYVTGQGTSDNSTK 120
++T+IEAD V +P ++ F R L ++ ++ A P G +D
Sbjct: 217 QLTVIEADGVSTQPVTVDSIQIFAAQRYSFVLNANQDVDNYWIRANPNFGTTGFADGVNS 276
Query: 121 PILPARKDTSFPTS-FTNKLGT 141
IL R D + P TN+ GT
Sbjct: 277 AIL--RYDDADPVEPVTNQTGT 296
>pdb|2OQY|A Chain A, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|B Chain B, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|C Chain C, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|D Chain D, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|E Chain E, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|F Chain F, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|G Chain G, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|H Chain H, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|3ES7|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES7|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|C Chain C, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|D Chain D, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|E Chain E, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|F Chain F, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|G Chain G, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|H Chain H, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3FYY|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3FYY|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3GD6|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Phosphate
Length = 391
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 83 HSFPPDRQQKFLSKPNATFFTTARPYVTGQGTSDNSTKPILPARKDTSFPTSFTNKLGTL 142
H + +QQ+ + K F + ++ G ++ + A KD T+ +GT
Sbjct: 246 HVWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLGTTQELSVGTA 305
Query: 143 AISHVPVNAPKTLTCNSSPEGPN---GTMFQNR 172
A++H+ + + S P GP G + +NR
Sbjct: 306 AMAHLGCSLT-NINHTSDPTGPELYVGDVVKNR 337
>pdb|3HPF|A Chain A, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
pdb|3HPF|B Chain B, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
Length = 391
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 83 HSFPPDRQQKFLSKPNATFFTTARPYVTGQGTSDNSTKPILPARKDTSFPTSFTNKLGTL 142
H + +QQ+ + K F + ++ G ++ + A KD T+ +GT
Sbjct: 246 HVWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLGTTQELSVGTA 305
Query: 143 AISHVPVNAPKTLTCNSSPEGPN---GTMFQNR 172
A++H+ + + S P GP G + +NR
Sbjct: 306 AMAHLGCSLT-NINHTSDPTGPELYVGDVVKNR 337
>pdb|3POB|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain In Complex With
The Collagen- Like Domain Of Mbl
pdb|3POE|A Chain A, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POF|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POF|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|A Chain A, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|B Chain B, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|C Chain C, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POI|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Methylamine
pdb|3POI|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Methylamine
pdb|3POJ|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Ethylamine
pdb|3POJ|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Ethylamine
Length = 115
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 135 FTNKLGTLAISHVPVNAPKTLTCNSSPEGPNGTM--FQNRSILRAESHPLQLHGFNFFVV 192
FT + GT+ P PK+ C+ + + G M Q I E HP +++ +
Sbjct: 9 FTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHPEVPCPYDYIKI 68
Query: 193 EQGSGNFDP 201
+ GS + P
Sbjct: 69 KAGSKVWGP 77
>pdb|2DVK|A Chain A, Crystal Structure Of Hypothetical Protein From Aeropyrum
Pernix
Length = 188
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 51 PGRSINCSACLGRVTIIEADAVHVK---PFETKTLHSFPPDRQQKFLSKPNATFFTTARP 107
P + ++ S+C GR+T+IE +A ++ KT H ++ L + FT
Sbjct: 31 PSKIVSTSSCTGRITLIEGEAHWLRNGARVAYKTHHPISRSEVERVLRRG----FTNLWL 86
Query: 108 YVTG 111
VTG
Sbjct: 87 KVTG 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,390,127
Number of Sequences: 62578
Number of extensions: 408471
Number of successful extensions: 617
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 21
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)